Query 005009
Match_columns 719
No_of_seqs 359 out of 3081
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:37:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a0g_A Adenosylmethionine-8-am 100.0 6E-107 2E-111 969.6 47.5 662 14-714 11-689 (831)
2 4e3q_A Pyruvate transaminase; 100.0 4.5E-66 1.5E-70 582.5 21.1 304 350-712 24-328 (473)
3 4atq_A 4-aminobutyrate transam 100.0 9.8E-60 3.3E-64 528.8 25.3 272 375-713 46-318 (456)
4 4ao9_A Beta-phenylalanine amin 100.0 4.5E-55 1.5E-59 490.0 28.2 287 331-714 25-311 (454)
5 3i5t_A Aminotransferase; pyrid 100.0 1.9E-51 6.5E-56 463.5 25.1 304 350-713 11-315 (476)
6 3hmu_A Aminotransferase, class 100.0 1.5E-51 5.2E-56 464.0 16.6 298 354-711 16-314 (472)
7 4a6r_A Omega transaminase; tra 100.0 4.3E-48 1.5E-52 432.8 25.6 302 352-712 9-311 (459)
8 3gju_A Putative aminotransfera 100.0 3.2E-48 1.1E-52 433.9 21.7 303 352-712 8-313 (460)
9 3dod_A Adenosylmethionine-8-am 100.0 1.3E-46 4.4E-51 419.3 19.3 299 353-713 5-304 (448)
10 3tfu_A Adenosylmethionine-8-am 100.0 2E-46 6.9E-51 420.5 20.9 290 353-712 33-326 (457)
11 3n5m_A Adenosylmethionine-8-am 100.0 5.5E-45 1.9E-49 405.9 24.0 295 352-713 11-308 (452)
12 3oks_A 4-aminobutyrate transam 100.0 1E-44 3.5E-49 405.2 24.9 276 375-713 43-319 (451)
13 4ffc_A 4-aminobutyrate aminotr 100.0 2.1E-44 7.2E-49 403.0 24.4 271 375-713 46-317 (453)
14 2yky_A Beta-transaminase; tran 100.0 1.7E-43 5.7E-48 398.0 0.0 285 331-713 38-323 (465)
15 3i4j_A Aminotransferase, class 100.0 2.1E-40 7.3E-45 365.9 24.2 282 359-713 2-285 (430)
16 3a8u_X Omega-amino acid--pyruv 100.0 4.1E-40 1.4E-44 366.0 19.9 302 353-713 11-312 (449)
17 1z7d_A Ornithine aminotransfer 100.0 3E-39 1E-43 359.1 24.2 258 375-713 47-305 (433)
18 4e77_A Glutamate-1-semialdehyd 100.0 4.8E-39 1.7E-43 355.3 25.6 258 374-713 34-291 (429)
19 3l44_A Glutamate-1-semialdehyd 100.0 4.7E-39 1.6E-43 355.6 25.3 258 374-713 36-293 (434)
20 3k28_A Glutamate-1-semialdehyd 100.0 4.3E-39 1.5E-43 356.0 24.9 258 374-713 34-291 (429)
21 2oat_A Ornithine aminotransfer 100.0 5.6E-39 1.9E-43 357.7 23.8 258 375-713 58-316 (439)
22 3fq8_A Glutamate-1-semialdehyd 100.0 5.5E-38 1.9E-42 346.3 23.8 258 374-713 33-290 (427)
23 1ohv_A 4-aminobutyrate aminotr 100.0 2.6E-38 8.9E-43 356.0 20.1 272 377-695 47-336 (472)
24 3dxv_A Alpha-amino-epsilon-cap 100.0 4.9E-37 1.7E-41 339.9 24.8 266 375-713 25-293 (439)
25 2epj_A Glutamate-1-semialdehyd 100.0 1.2E-36 4E-41 336.8 24.4 257 375-713 38-294 (434)
26 2cjg_A L-lysine-epsilon aminot 100.0 7.4E-37 2.5E-41 341.4 21.6 267 383-710 41-316 (449)
27 2pb2_A Acetylornithine/succiny 100.0 1E-36 3.4E-41 337.0 21.6 270 353-713 24-293 (420)
28 3nx3_A Acoat, acetylornithine 100.0 2.8E-36 9.7E-41 328.6 21.9 254 375-713 18-272 (395)
29 1zod_A DGD, 2,2-dialkylglycine 100.0 5.7E-36 2E-40 330.4 22.3 270 376-713 26-295 (433)
30 2e7u_A Glutamate-1-semialdehyd 100.0 2.4E-35 8.1E-40 325.3 24.6 256 375-713 34-289 (424)
31 2cy8_A D-phgat, D-phenylglycin 100.0 1.3E-35 4.5E-40 330.4 20.8 254 375-713 39-292 (453)
32 1s0a_A Adenosylmethionine-8-am 100.0 7E-35 2.4E-39 321.7 24.6 288 358-713 10-298 (429)
33 2eo5_A 419AA long hypothetical 100.0 2.2E-33 7.4E-38 309.7 23.7 277 375-711 24-302 (419)
34 3fgn_A Dethiobiotin synthetase 100.0 8.8E-34 3E-38 294.4 18.2 196 35-315 24-226 (251)
35 3qxc_A Dethiobiotin synthetase 100.0 3E-33 1E-37 288.8 20.5 182 30-291 14-201 (242)
36 3of5_A Dethiobiotin synthetase 100.0 1.6E-33 5.5E-38 288.6 17.0 202 36-328 3-218 (228)
37 3ruy_A Ornithine aminotransfer 100.0 1.9E-32 6.6E-37 297.7 24.7 258 375-713 18-275 (392)
38 4adb_A Succinylornithine trans 100.0 1.8E-31 6E-36 290.7 22.4 255 375-713 21-275 (406)
39 1sff_A 4-aminobutyrate aminotr 100.0 7.5E-31 2.6E-35 287.9 25.1 281 356-713 10-291 (426)
40 2ord_A Acoat, acetylornithine 100.0 1.9E-28 6.5E-33 266.9 18.8 253 374-712 21-273 (397)
41 1vef_A Acetylornithine/acetyl- 99.9 4.8E-27 1.6E-31 255.4 20.9 251 375-713 27-277 (395)
42 2eh6_A Acoat, acetylornithine 99.9 4.6E-26 1.6E-30 245.3 24.5 256 374-713 9-264 (375)
43 3l8a_A METC, putative aminotra 99.9 9.4E-22 3.2E-26 216.4 16.1 236 382-712 46-292 (421)
44 2w8t_A SPT, serine palmitoyltr 99.9 3.7E-21 1.3E-25 212.4 17.4 225 378-713 49-285 (427)
45 1byi_A Dethiobiotin synthase; 99.9 2.8E-20 9.6E-25 187.3 20.7 205 38-326 2-220 (224)
46 3kki_A CAI-1 autoinducer synth 99.8 1.8E-20 6E-25 205.0 11.8 219 384-712 48-276 (409)
47 3tqx_A 2-amino-3-ketobutyrate 99.8 1E-19 3.5E-24 196.8 15.4 227 378-712 29-266 (399)
48 1fc4_A 2-amino-3-ketobutyrate 99.8 1.9E-19 6.5E-24 195.6 14.2 229 377-712 29-268 (401)
49 1bs0_A Protein (8-amino-7-oxon 99.8 5.2E-18 1.8E-22 183.2 18.1 225 376-712 23-256 (384)
50 3dzz_A Putative pyridoxal 5'-p 99.7 1.7E-17 5.9E-22 178.8 17.6 234 383-712 15-258 (391)
51 3a2b_A Serine palmitoyltransfe 99.7 1.6E-17 5.3E-22 180.5 17.1 225 376-712 27-263 (398)
52 3fdb_A Beta C-S lyase, putativ 99.7 5.2E-17 1.8E-21 174.4 15.0 229 383-712 11-247 (377)
53 3kax_A Aminotransferase, class 99.7 2.5E-16 8.7E-21 169.2 17.4 234 383-712 11-254 (383)
54 2obn_A Hypothetical protein; s 99.7 1.5E-16 5.3E-21 171.2 13.0 87 220-310 225-335 (349)
55 4dq6_A Putative pyridoxal phos 99.7 3.4E-16 1.2E-20 168.6 12.9 237 382-712 14-262 (391)
56 1c7n_A Cystalysin; transferase 99.7 6.9E-16 2.3E-20 167.4 14.8 238 383-712 12-262 (399)
57 1d2f_A MALY protein; aminotran 99.6 2.9E-15 1E-19 162.1 18.6 237 382-711 10-256 (390)
58 1yiz_A Kynurenine aminotransfe 99.6 2.6E-15 8.8E-20 164.8 17.6 228 400-712 38-278 (429)
59 2bwn_A 5-aminolevulinate synth 99.6 4.6E-15 1.6E-19 161.2 16.4 213 393-712 44-268 (401)
60 3b1d_A Betac-S lyase; HET: PLP 99.4 4E-17 1.4E-21 177.4 0.0 238 382-713 16-263 (392)
61 2zc0_A Alanine glyoxylate tran 99.6 5.1E-15 1.8E-19 160.9 16.7 227 400-712 35-269 (407)
62 3nra_A Aspartate aminotransfer 99.6 4.6E-15 1.6E-19 160.9 14.7 245 378-712 21-276 (407)
63 2dou_A Probable N-succinyldiam 99.6 1.9E-14 6.5E-19 155.0 15.1 216 400-712 26-253 (376)
64 1lc5_A COBD, L-threonine-O-3-p 99.6 2.4E-14 8.1E-19 153.7 15.1 217 390-712 19-240 (364)
65 3jtx_A Aminotransferase; NP_28 99.6 6E-14 2E-18 151.7 17.7 231 389-712 24-268 (396)
66 1v2d_A Glutamine aminotransfer 99.5 3.7E-14 1.3E-18 152.9 14.5 212 400-712 26-245 (381)
67 3b46_A Aminotransferase BNA3; 99.5 1E-13 3.5E-18 153.9 17.2 228 400-712 58-298 (447)
68 1j32_A Aspartate aminotransfer 99.5 1.3E-13 4.6E-18 148.8 17.8 224 393-712 28-260 (388)
69 2zyj_A Alpha-aminodipate amino 99.5 2.2E-14 7.5E-19 155.8 11.6 219 400-712 33-260 (397)
70 3ke3_A Putative serine-pyruvat 99.5 7E-14 2.4E-18 151.7 15.0 214 388-713 5-222 (379)
71 1u08_A Hypothetical aminotrans 99.5 1.8E-13 6.3E-18 147.8 18.2 219 400-712 31-259 (386)
72 3ftb_A Histidinol-phosphate am 99.5 1E-13 3.5E-18 147.8 16.0 222 384-714 14-241 (361)
73 2o0r_A RV0858C (N-succinyldiam 99.5 1.5E-13 5.1E-18 150.1 17.5 222 400-712 26-256 (411)
74 3ezs_A Aminotransferase ASPB; 99.5 6E-14 2E-18 150.7 14.2 220 400-712 24-254 (376)
75 3euc_A Histidinol-phosphate am 99.5 1.1E-13 3.9E-18 148.2 16.2 218 400-713 31-250 (367)
76 2x5d_A Probable aminotransfera 99.5 1E-13 3.4E-18 151.5 15.8 224 392-712 34-268 (412)
77 3piu_A 1-aminocyclopropane-1-c 99.5 2.6E-14 8.9E-19 157.5 11.2 234 389-711 30-296 (435)
78 1ajs_A Aspartate aminotransfer 99.5 9.6E-14 3.3E-18 151.3 15.3 228 400-709 31-281 (412)
79 2q7w_A Aspartate aminotransfer 99.5 1.1E-13 3.9E-18 149.5 15.6 215 400-703 27-260 (396)
80 2ay1_A Aroat, aromatic amino a 99.5 1.3E-13 4.4E-18 149.2 15.2 221 400-709 27-266 (394)
81 3aow_A Putative uncharacterize 99.5 1.7E-13 5.8E-18 152.6 16.5 226 400-712 77-311 (448)
82 2o1b_A Aminotransferase, class 99.5 1.6E-13 5.5E-18 150.0 15.8 219 400-712 48-276 (404)
83 2z61_A Probable aspartate amin 99.5 2.7E-13 9.3E-18 145.6 17.2 209 400-712 30-245 (370)
84 2gb3_A Aspartate aminotransfer 99.5 1.7E-13 5.8E-18 149.7 15.5 221 393-712 41-268 (409)
85 1gd9_A Aspartate aminotransfer 99.5 3.5E-13 1.2E-17 145.6 17.7 219 400-712 27-256 (389)
86 1ax4_A Tryptophanase; tryptoph 99.5 1.8E-13 6.2E-18 151.8 15.7 183 400-664 44-227 (467)
87 1vp4_A Aminotransferase, putat 99.5 1E-13 3.5E-18 152.4 13.3 228 400-712 44-282 (425)
88 3ly1_A Putative histidinol-pho 99.5 2.6E-13 9E-18 144.4 16.0 223 388-713 9-237 (354)
89 3cq5_A Histidinol-phosphate am 99.5 3.7E-13 1.3E-17 144.8 17.0 215 402-714 33-256 (369)
90 1xi9_A Putative transaminase; 99.5 4.3E-13 1.5E-17 146.2 17.2 225 392-712 35-274 (406)
91 3op7_A Aminotransferase class 99.5 1.4E-13 4.9E-18 147.9 12.1 179 445-713 65-246 (375)
92 2oqx_A Tryptophanase; lyase, p 99.5 4.6E-14 1.6E-18 156.6 8.1 222 400-706 42-281 (467)
93 1svv_A Threonine aldolase; str 99.5 5.2E-13 1.8E-17 141.6 15.8 210 412-711 22-236 (359)
94 1o4s_A Aspartate aminotransfer 99.5 8.6E-13 2.9E-17 143.2 17.8 221 400-712 42-269 (389)
95 1kmj_A Selenocysteine lyase; p 99.5 7.2E-13 2.5E-17 142.9 16.4 212 400-712 25-247 (406)
96 3dyd_A Tyrosine aminotransfera 99.5 1E-12 3.4E-17 144.9 17.8 227 390-711 49-292 (427)
97 3e2y_A Kynurenine-oxoglutarate 99.4 4.3E-13 1.5E-17 145.7 14.3 230 400-712 24-263 (410)
98 3fvs_A Kynurenine--oxoglutarat 99.4 9.2E-13 3.1E-17 143.8 17.0 229 400-712 29-270 (422)
99 3ffh_A Histidinol-phosphate am 99.4 7.9E-13 2.7E-17 141.4 16.1 212 400-713 33-249 (363)
100 2ez2_A Beta-tyrosinase, tyrosi 99.4 7.7E-13 2.6E-17 146.4 16.0 220 400-711 43-278 (456)
101 3h14_A Aminotransferase, class 99.4 1.2E-12 4E-17 141.7 16.4 222 392-712 28-253 (391)
102 3ele_A Amino transferase; RER0 99.4 1.2E-12 4E-17 141.9 15.5 216 400-708 36-267 (398)
103 3lvm_A Cysteine desulfurase; s 99.4 5.7E-13 1.9E-17 145.3 12.8 211 400-712 24-246 (423)
104 3f9t_A TDC, L-tyrosine decarbo 99.4 1E-12 3.5E-17 140.8 13.9 210 414-707 40-263 (397)
105 3qgu_A LL-diaminopimelate amin 99.4 1.1E-12 3.8E-17 144.9 13.6 225 392-709 66-302 (449)
106 1iay_A ACC synthase 2, 1-amino 99.4 4.7E-12 1.6E-16 138.9 17.7 224 400-712 37-292 (428)
107 1qz9_A Kynureninase; kynurenin 99.4 2.2E-12 7.6E-17 140.3 14.7 210 400-712 30-250 (416)
108 1t3i_A Probable cysteine desul 99.4 5.8E-12 2E-16 136.6 17.6 215 400-713 28-253 (420)
109 1vjo_A Alanine--glyoxylate ami 99.4 9.5E-13 3.2E-17 142.1 11.3 205 400-712 35-243 (393)
110 1elu_A L-cysteine/L-cystine C- 99.4 9.5E-13 3.2E-17 141.4 10.6 211 400-712 18-242 (390)
111 1v72_A Aldolase; PLP-dependent 99.4 3.8E-12 1.3E-16 134.9 14.9 211 400-711 8-232 (356)
112 3hdo_A Histidinol-phosphate am 99.4 2.5E-12 8.6E-17 137.7 13.4 215 392-713 23-238 (360)
113 2e7j_A SEP-tRNA:Cys-tRNA synth 99.4 3.2E-12 1.1E-16 136.5 13.1 213 400-712 10-232 (371)
114 3g0t_A Putative aminotransfera 99.3 1.3E-11 4.6E-16 135.2 17.4 226 389-710 38-282 (437)
115 2dr1_A PH1308 protein, 386AA l 99.3 4.9E-12 1.7E-16 135.6 13.3 206 400-711 21-229 (386)
116 3t18_A Aminotransferase class 99.3 1.6E-11 5.5E-16 133.9 17.2 227 400-712 38-287 (413)
117 2ctz_A O-acetyl-L-homoserine s 99.3 5.8E-12 2E-16 139.1 13.2 164 440-704 55-221 (421)
118 3kgw_A Alanine-glyoxylate amin 99.3 1.7E-12 5.7E-17 139.4 8.4 196 418-713 35-233 (393)
119 3qhx_A Cystathionine gamma-syn 99.3 1E-11 3.5E-16 135.8 14.4 170 440-711 63-236 (392)
120 3f0h_A Aminotransferase; RER07 99.3 2.6E-12 9E-17 137.6 9.5 197 418-713 31-229 (376)
121 2dkj_A Serine hydroxymethyltra 99.3 5.4E-12 1.8E-16 136.7 11.8 207 400-712 24-248 (407)
122 3mad_A Sphingosine-1-phosphate 99.3 1.9E-11 6.4E-16 138.2 16.5 208 415-710 107-332 (514)
123 3nmy_A Xometc, cystathionine g 99.3 5.1E-12 1.7E-16 139.1 11.5 172 439-711 63-238 (400)
124 2x5f_A Aspartate_tyrosine_phen 99.3 6.4E-12 2.2E-16 138.0 11.5 220 400-712 48-297 (430)
125 3zrp_A Serine-pyruvate aminotr 99.3 4.7E-12 1.6E-16 135.5 9.6 192 418-711 14-210 (384)
126 1bw0_A TAT, protein (tyrosine 99.3 3.2E-11 1.1E-15 131.5 16.0 217 400-706 34-270 (416)
127 2cb1_A O-acetyl homoserine sul 99.3 2.8E-11 9.6E-16 132.9 15.3 189 411-705 28-218 (412)
128 3acz_A Methionine gamma-lyase; 99.3 2.1E-11 7.4E-16 132.9 13.7 193 411-711 30-229 (389)
129 4f4e_A Aromatic-amino-acid ami 99.3 6.7E-11 2.3E-15 129.7 17.5 224 400-709 50-292 (420)
130 3fkd_A L-threonine-O-3-phospha 99.3 5E-11 1.7E-15 126.9 15.9 213 387-714 7-222 (350)
131 1eg5_A Aminotransferase; PLP-d 99.3 6.1E-11 2.1E-15 126.7 16.2 204 400-707 3-219 (384)
132 1cs1_A CGS, protein (cystathio 99.2 4.6E-11 1.6E-15 129.5 15.0 169 440-711 49-222 (386)
133 3fsl_A Aromatic-amino-acid ami 99.2 1.1E-10 3.8E-15 126.1 17.8 224 400-709 27-270 (397)
134 3nnk_A Ureidoglycine-glyoxylat 99.2 1.1E-11 3.8E-16 134.1 9.5 196 418-713 25-223 (411)
135 3gbx_A Serine hydroxymethyltra 99.2 9.5E-12 3.3E-16 135.1 9.0 90 602-711 159-255 (420)
136 3ei9_A LL-diaminopimelate amin 99.2 1.1E-10 3.7E-15 128.2 17.1 225 392-707 53-288 (432)
137 3asa_A LL-diaminopimelate amin 99.2 1.5E-10 5.1E-15 125.9 17.9 210 400-707 34-254 (400)
138 3lws_A Aromatic amino acid bet 99.2 1.1E-11 3.7E-16 132.3 8.6 214 400-712 4-227 (357)
139 2rfv_A Methionine gamma-lyase; 99.2 9.9E-11 3.4E-15 127.5 16.2 190 418-709 39-231 (398)
140 1m32_A 2-aminoethylphosphonate 99.2 2.2E-11 7.7E-16 129.1 10.8 209 400-713 4-216 (366)
141 3ndn_A O-succinylhomoserine su 99.2 3.6E-11 1.2E-15 132.9 12.3 171 439-709 77-248 (414)
142 2z9v_A Aspartate aminotransfer 99.2 4.3E-11 1.5E-15 128.9 12.6 206 400-712 10-218 (392)
143 3ecd_A Serine hydroxymethyltra 99.2 6.3E-11 2.1E-15 128.8 13.3 196 414-711 42-256 (425)
144 3get_A Histidinol-phosphate am 99.2 8.7E-11 3E-15 125.6 14.2 213 400-713 31-251 (365)
145 1gc0_A Methionine gamma-lyase; 99.2 6.5E-11 2.2E-15 129.2 13.4 170 440-709 62-232 (398)
146 2oga_A Transaminase; PLP-depen 99.2 7.3E-11 2.5E-15 128.5 13.3 196 400-711 31-235 (399)
147 2g0t_A Conserved hypothetical 99.2 3.7E-11 1.3E-15 129.6 10.8 141 37-288 169-323 (350)
148 3ht4_A Aluminum resistance pro 99.2 2.8E-10 9.6E-15 126.6 17.8 212 418-712 37-257 (431)
149 3rq1_A Aminotransferase class 99.2 2E-10 7E-15 125.3 16.4 227 400-712 39-288 (418)
150 1fg7_A Histidinol phosphate am 99.2 7.1E-11 2.4E-15 126.8 12.0 207 400-713 30-238 (356)
151 3nyt_A Aminotransferase WBPE; 99.2 2.1E-11 7.3E-16 131.1 7.5 194 412-711 6-207 (367)
152 2huf_A Alanine glyoxylate amin 99.2 5.7E-11 1.9E-15 128.0 10.2 195 418-712 31-228 (393)
153 2qma_A Diaminobutyrate-pyruvat 99.2 4.5E-10 1.5E-14 126.4 17.8 86 619-711 258-347 (497)
154 1wyu_B Glycine dehydrogenase s 99.2 1.4E-10 4.8E-15 129.9 13.4 210 413-712 75-293 (474)
155 3uwc_A Nucleotide-sugar aminot 99.2 4.1E-11 1.4E-15 128.3 8.6 192 410-710 8-208 (374)
156 3frk_A QDTB; aminotransferase, 99.2 5.3E-11 1.8E-15 127.9 9.4 194 412-710 7-207 (373)
157 3mc6_A Sphingosine-1-phosphate 99.2 1.2E-10 4E-15 130.7 12.5 209 414-711 74-301 (497)
158 1yaa_A Aspartate aminotransfer 99.1 4.1E-10 1.4E-14 122.7 16.1 227 400-711 30-287 (412)
159 3cai_A Possible aminotransfera 99.1 6.6E-10 2.3E-14 120.3 16.4 209 400-712 28-248 (406)
160 3isl_A Purine catabolism prote 99.1 1.5E-10 5.1E-15 125.5 9.8 203 412-712 14-220 (416)
161 2yrr_A Aminotransferase, class 99.1 1E-10 3.6E-15 123.3 8.3 193 418-712 12-208 (353)
162 3h7f_A Serine hydroxymethyltra 99.1 3.4E-10 1.2E-14 125.6 12.7 196 415-712 56-269 (447)
163 3n0l_A Serine hydroxymethyltra 99.1 3.1E-10 1.1E-14 123.2 12.0 195 414-711 35-248 (417)
164 3dr4_A Putative perosamine syn 99.1 1.4E-10 4.7E-15 125.6 8.5 192 412-711 26-227 (391)
165 3ez1_A Aminotransferase MOCR f 99.1 3.8E-11 1.3E-15 131.3 4.1 232 400-712 17-275 (423)
166 1mdo_A ARNB aminotransferase; 99.1 6.3E-10 2.1E-14 119.9 13.4 184 418-711 19-209 (393)
167 3a9z_A Selenocysteine lyase; P 99.1 5.9E-10 2E-14 122.0 13.3 222 400-707 20-262 (432)
168 2vi8_A Serine hydroxymethyltra 99.1 7.6E-10 2.6E-14 119.6 13.9 92 602-712 153-247 (405)
169 3e9k_A Kynureninase; kynurenin 99.1 2.8E-10 9.4E-15 126.6 10.6 223 400-712 69-299 (465)
170 3vax_A Putative uncharacterize 99.1 2.6E-10 9E-15 123.0 9.5 212 389-705 15-235 (400)
171 1o69_A Aminotransferase; struc 99.0 1.2E-09 4.1E-14 118.8 14.2 191 418-711 11-205 (394)
172 2ch1_A 3-hydroxykynurenine tra 99.0 3.1E-10 1.1E-14 122.3 9.2 193 418-711 30-226 (396)
173 3pj0_A LMO0305 protein; struct 99.0 3.9E-10 1.3E-14 120.1 9.0 195 418-712 28-229 (359)
174 2r2n_A Kynurenine/alpha-aminoa 99.0 2.5E-09 8.7E-14 117.4 15.8 189 442-712 81-285 (425)
175 3f6t_A Aspartate aminotransfer 99.0 7.2E-10 2.5E-14 126.3 10.8 225 400-706 100-330 (533)
176 1qgn_A Protein (cystathionine 99.0 2.4E-09 8.4E-14 119.5 14.5 172 440-712 111-285 (445)
177 2po3_A 4-dehydrase; external a 99.0 5.1E-09 1.8E-13 114.8 15.6 184 418-711 31-221 (424)
178 3g7q_A Valine-pyruvate aminotr 99.0 1.1E-09 3.7E-14 119.1 9.8 90 619-712 180-272 (417)
179 2bkw_A Alanine-glyoxylate amin 99.0 1.1E-09 3.6E-14 117.3 9.5 90 602-709 127-220 (385)
180 3b8x_A WBDK, pyridoxamine 5-ph 99.0 6.2E-09 2.1E-13 112.6 15.6 201 408-709 3-209 (390)
181 4eb5_A Probable cysteine desul 99.0 3.7E-09 1.3E-13 112.9 13.5 207 400-707 2-215 (382)
182 1jg8_A L-ALLO-threonine aldola 99.0 9.1E-09 3.1E-13 108.9 16.3 210 400-711 4-223 (347)
183 2fnu_A Aminotransferase; prote 99.0 3E-09 1E-13 113.5 12.6 187 418-711 12-204 (375)
184 1pff_A Methionine gamma-lyase; 98.9 1.9E-09 6.4E-14 113.7 10.3 165 447-713 2-171 (331)
185 4hvk_A Probable cysteine desul 98.9 7.9E-09 2.7E-13 109.8 15.0 205 400-707 2-215 (382)
186 1n8p_A Cystathionine gamma-lya 98.9 5.1E-09 1.7E-13 114.5 13.6 169 440-712 52-228 (393)
187 2jis_A Cysteine sulfinic acid 98.9 7E-09 2.4E-13 117.3 15.0 190 445-709 150-348 (515)
188 3if2_A Aminotransferase; YP_26 98.9 3.4E-09 1.2E-13 116.5 11.8 91 618-712 205-298 (444)
189 3ppl_A Aspartate aminotransfer 98.9 6.9E-10 2.3E-14 121.8 5.6 102 602-712 170-282 (427)
190 2c81_A Glutamine-2-deoxy-scyll 98.9 8.7E-09 3E-13 112.6 14.3 190 418-711 15-213 (418)
191 1b9h_A AHBA synthase, protein 98.9 6.9E-09 2.4E-13 111.9 13.1 187 418-711 16-211 (388)
192 1uu1_A Histidinol-phosphate am 98.9 8E-09 2.7E-13 109.4 13.0 200 400-712 20-225 (335)
193 1iug_A Putative aspartate amin 98.9 6.6E-09 2.3E-13 109.7 12.0 188 418-710 13-205 (352)
194 1g3q_A MIND ATPase, cell divis 98.9 2.7E-08 9.2E-13 100.2 15.9 87 220-315 111-202 (237)
195 3bb8_A CDP-4-keto-6-deoxy-D-gl 98.9 2E-08 6.8E-13 110.8 15.0 188 418-708 42-237 (437)
196 1ibj_A CBL, cystathionine beta 98.8 1.5E-08 5.3E-13 113.5 14.0 167 441-711 131-302 (464)
197 1b5p_A Protein (aspartate amin 98.8 7.1E-08 2.4E-12 104.2 18.6 218 400-712 32-257 (385)
198 4eu1_A Mitochondrial aspartate 98.8 1.1E-08 3.9E-13 111.2 12.4 217 400-706 42-278 (409)
199 3p1t_A Putative histidinol-pho 98.8 8.7E-08 3E-12 100.7 18.0 205 400-713 17-222 (337)
200 1e5e_A MGL, methionine gamma-l 98.8 4.5E-08 1.5E-12 107.3 16.0 169 440-713 59-235 (404)
201 3cog_A Cystathionine gamma-lya 98.8 1.9E-08 6.5E-13 110.4 12.6 169 440-711 64-237 (403)
202 3d6k_A Putative aminotransfera 98.8 3E-09 1E-13 116.7 6.0 102 602-712 168-280 (422)
203 1hyq_A MIND, cell division inh 98.8 1.9E-07 6.6E-12 95.7 18.4 86 221-315 111-201 (263)
204 3jzl_A Putative cystathionine 98.8 8.8E-08 3E-12 105.8 16.4 206 418-712 31-251 (409)
205 3meb_A Aspartate aminotransfer 98.7 5.1E-08 1.7E-12 108.1 13.9 94 602-703 190-293 (448)
206 3ri6_A O-acetylhomoserine sulf 98.7 4.4E-08 1.5E-12 108.8 13.1 164 440-703 79-242 (430)
207 2aeu_A Hypothetical protein MJ 98.7 2.7E-08 9.1E-13 107.9 10.9 87 619-712 140-229 (374)
208 2okj_A Glutamate decarboxylase 98.7 1.3E-07 4.3E-12 106.5 16.3 100 602-709 230-333 (504)
209 3ea0_A ATPase, para family; al 98.7 6E-07 2E-11 90.7 19.2 101 192-314 103-209 (245)
210 4dzz_A Plasmid partitioning pr 98.7 1.3E-07 4.6E-12 92.8 13.3 87 220-315 75-171 (206)
211 2ph1_A Nucleotide-binding prot 98.7 7.8E-07 2.7E-11 91.7 19.5 89 220-315 128-231 (262)
212 3q9l_A Septum site-determining 98.6 8.4E-07 2.9E-11 90.4 16.8 103 191-315 96-216 (260)
213 3hvy_A Cystathionine beta-lyas 98.6 3.8E-07 1.3E-11 101.3 15.2 205 418-712 46-268 (427)
214 3la6_A Tyrosine-protein kinase 98.6 1.4E-06 4.8E-11 91.6 18.0 78 194-290 188-265 (286)
215 3ffr_A Phosphoserine aminotran 98.6 8.9E-08 3E-12 101.2 8.5 191 418-712 16-213 (362)
216 7aat_A Aspartate aminotransfer 98.6 1.9E-06 6.4E-11 93.2 18.7 97 602-706 163-270 (401)
217 3i16_A Aluminum resistance pro 98.5 2E-06 6.7E-11 95.5 18.9 96 602-713 165-269 (427)
218 2fq6_A Cystathionine beta-lyas 98.5 4.6E-07 1.6E-11 100.0 12.9 171 439-711 78-253 (415)
219 3bfv_A CAPA1, CAPB2, membrane 98.5 2.2E-06 7.4E-11 89.4 16.6 64 221-290 192-255 (271)
220 3cio_A ETK, tyrosine-protein k 98.5 8.2E-07 2.8E-11 93.9 13.4 76 195-289 201-276 (299)
221 2x3l_A ORN/Lys/Arg decarboxyla 98.5 1.5E-07 5.1E-12 104.7 7.2 82 619-709 146-230 (446)
222 3dm5_A SRP54, signal recogniti 98.4 8.1E-06 2.8E-10 90.7 18.6 37 36-78 99-135 (443)
223 3tcm_A Alanine aminotransferas 98.4 1.6E-06 5.4E-11 97.7 13.1 214 418-712 108-344 (500)
224 2zy4_A L-aspartate beta-decarb 98.4 7.5E-07 2.6E-11 101.8 10.2 223 401-711 106-338 (546)
225 1s1m_A CTP synthase; CTP synth 98.3 1.2E-06 4E-11 99.6 10.5 38 37-79 3-41 (545)
226 3k9g_A PF-32 protein; ssgcid, 98.3 1E-05 3.5E-10 83.2 16.3 91 220-317 144-237 (267)
227 3ug7_A Arsenical pump-driving 98.3 1.4E-06 4.9E-11 94.0 9.9 64 251-316 238-318 (349)
228 3end_A Light-independent proto 98.3 2.5E-06 8.5E-11 89.8 10.8 88 220-315 156-249 (307)
229 3zq6_A Putative arsenical pump 98.3 7.7E-06 2.6E-10 87.3 14.2 40 251-290 223-262 (324)
230 1vco_A CTP synthetase; tetrame 98.2 3E-06 1E-10 96.3 10.8 39 36-79 11-50 (550)
231 2woo_A ATPase GET3; tail-ancho 98.2 2.4E-05 8.2E-10 83.7 16.9 62 253-315 224-302 (329)
232 3vp6_A Glutamate decarboxylase 98.2 2.2E-05 7.4E-10 88.8 15.9 97 602-706 233-332 (511)
233 1wcv_1 SOJ, segregation protei 98.1 2.5E-05 8.5E-10 80.0 14.5 86 220-314 111-210 (257)
234 3ju7_A Putative PLP-dependent 98.1 2.4E-05 8.3E-10 84.8 15.1 189 418-710 15-211 (377)
235 1ihu_A Arsenical pump-driving 98.1 3.6E-06 1.2E-10 96.9 9.0 95 220-316 440-571 (589)
236 2dgk_A GAD-beta, GADB, glutama 98.1 1.7E-05 5.8E-10 87.7 13.3 201 418-706 55-278 (452)
237 3ihj_A Alanine aminotransferas 98.1 3.2E-05 1.1E-09 87.2 15.2 216 418-712 103-343 (498)
238 4e1o_A HDC, histidine decarbox 98.1 3.5E-05 1.2E-09 86.3 14.6 97 602-706 226-325 (481)
239 1cp2_A CP2, nitrogenase iron p 98.0 2.1E-05 7.1E-10 80.7 11.2 90 220-315 115-213 (269)
240 3kjh_A CO dehydrogenase/acetyl 98.0 1.4E-05 4.6E-10 80.5 9.2 88 220-315 131-220 (254)
241 3cwq_A Para family chromosome 98.0 5.9E-05 2E-09 75.1 13.6 89 220-315 67-162 (209)
242 2xxa_A Signal recognition part 98.0 0.0001 3.5E-09 81.9 16.9 37 36-78 99-136 (433)
243 2xj4_A MIPZ; replication, cell 98.0 1.6E-05 5.6E-10 82.9 9.4 38 36-78 3-40 (286)
244 2a7v_A Serine hydroxymethyltra 98.0 1E-05 3.5E-10 91.3 8.4 59 643-706 220-281 (490)
245 1ihu_A Arsenical pump-driving 98.0 2.2E-06 7.7E-11 98.6 3.0 72 244-315 188-280 (589)
246 2afh_E Nitrogenase iron protei 98.0 4.1E-05 1.4E-09 79.7 12.3 90 220-315 118-216 (289)
247 2z67_A O-phosphoseryl-tRNA(SEC 98.0 3.5E-05 1.2E-09 85.5 12.2 99 602-711 217-320 (456)
248 3k40_A Aromatic-L-amino-acid d 97.8 0.00011 3.8E-09 82.1 13.8 78 622-706 238-318 (475)
249 1rv3_A Serine hydroxymethyltra 97.8 5.2E-05 1.8E-09 85.0 11.1 85 602-706 183-271 (483)
250 3hbx_A GAD 1, glutamate decarb 97.8 0.00027 9.2E-09 79.6 16.1 202 418-705 69-292 (502)
251 1js3_A DDC;, DOPA decarboxylas 97.8 0.00022 7.6E-09 79.4 15.1 79 621-706 238-319 (486)
252 2ffh_A Protein (FFH); SRP54, s 97.8 0.00032 1.1E-08 77.7 15.9 43 29-78 91-133 (425)
253 2oze_A ORF delta'; para, walke 97.7 3.8E-05 1.3E-09 80.1 7.4 66 220-292 154-225 (298)
254 3igf_A ALL4481 protein; two-do 97.7 0.00017 5.7E-09 78.7 11.2 63 251-316 215-277 (374)
255 2woj_A ATPase GET3; tail-ancho 97.6 0.0012 4.1E-08 71.3 16.8 46 245-290 226-275 (354)
256 3iqw_A Tail-anchored protein t 97.6 0.0014 4.9E-08 70.1 17.1 62 253-315 225-305 (334)
257 1w23_A Phosphoserine aminotran 97.5 6.4E-05 2.2E-09 79.4 5.7 75 619-712 141-217 (360)
258 3n75_A LDC, lysine decarboxyla 97.5 0.00029 9.8E-09 82.9 10.8 167 442-693 194-371 (715)
259 2fyf_A PSAT, phosphoserine ami 97.5 0.00013 4.6E-09 78.7 6.9 77 619-711 165-243 (398)
260 3fkq_A NTRC-like two-domain pr 97.4 0.00026 9E-09 76.7 9.1 39 35-78 141-179 (373)
261 1c4k_A Protein (ornithine deca 97.4 0.00051 1.7E-08 81.1 10.9 66 621-693 284-359 (730)
262 3kl4_A SRP54, signal recogniti 97.3 0.0017 5.7E-08 72.1 13.0 37 36-78 96-132 (433)
263 2vyc_A Biodegradative arginine 97.2 0.0015 5E-08 77.6 12.0 38 621-665 315-352 (755)
264 3io3_A DEHA2D07832P; chaperone 97.1 0.003 1E-07 68.1 12.8 63 252-315 233-314 (348)
265 1xjc_A MOBB protein homolog; s 97.1 0.0016 5.6E-08 63.0 9.3 37 36-78 3-39 (169)
266 3fwy_A Light-independent proto 97.1 0.0072 2.5E-07 64.1 15.1 36 37-78 48-83 (314)
267 2px0_A Flagellar biosynthesis 97.1 0.015 5E-07 61.1 17.2 39 35-78 103-141 (296)
268 2j37_W Signal recognition part 97.0 0.0044 1.5E-07 70.0 13.8 37 36-78 100-136 (504)
269 3bc8_A O-phosphoseryl-tRNA(SEC 96.9 0.0022 7.6E-08 71.4 9.1 99 601-709 184-286 (450)
270 1wyu_A Glycine dehydrogenase ( 96.8 0.0025 8.7E-08 69.8 8.8 79 619-711 196-282 (438)
271 3k7y_A Aspartate aminotransfer 96.8 0.043 1.5E-06 59.9 18.5 99 602-709 162-272 (405)
272 1zu4_A FTSY; GTPase, signal re 96.6 0.03 1E-06 59.4 15.3 35 37-77 105-139 (320)
273 1j8m_F SRP54, signal recogniti 96.5 0.052 1.8E-06 57.0 16.3 42 31-78 92-133 (297)
274 2v3c_C SRP54, signal recogniti 96.4 0.012 4.2E-07 65.1 11.4 36 37-78 99-134 (432)
275 1vma_A Cell division protein F 96.4 0.029 9.9E-07 59.3 13.4 42 30-77 96-138 (306)
276 3hl2_A O-phosphoseryl-tRNA(SEC 96.4 0.0087 3E-07 66.7 9.5 98 602-711 203-306 (501)
277 1ls1_A Signal recognition part 96.3 0.051 1.8E-06 56.9 14.7 43 29-78 91-133 (295)
278 2c0r_A PSAT, phosphoserine ami 96.2 0.012 4.1E-07 62.1 9.4 63 418-481 16-88 (362)
279 3pg5_A Uncharacterized protein 95.9 0.066 2.3E-06 57.6 13.6 37 37-78 1-37 (361)
280 3ez9_A Para; DNA binding, wing 95.6 0.031 1E-06 60.9 9.5 44 35-78 109-153 (403)
281 4h51_A Aspartate aminotransfer 94.2 0.35 1.2E-05 53.1 13.0 81 620-703 191-279 (420)
282 2yhs_A FTSY, cell division pro 93.6 1.7 5.8E-05 48.8 17.3 34 38-77 294-327 (503)
283 3vaa_A Shikimate kinase, SK; s 92.6 0.08 2.8E-06 51.4 4.2 48 5-62 2-49 (199)
284 3bh0_A DNAB-like replicative h 92.0 0.82 2.8E-05 48.0 11.4 35 39-78 69-103 (315)
285 1np6_A Molybdopterin-guanine d 92.0 0.14 5E-06 49.3 5.0 37 36-78 5-41 (174)
286 3e70_C DPA, signal recognition 91.8 3.8 0.00013 43.4 16.3 35 37-77 129-163 (328)
287 2f1r_A Molybdopterin-guanine d 91.6 0.093 3.2E-06 50.5 3.2 38 36-79 1-38 (171)
288 3bgw_A DNAB-like replicative h 90.6 1.1 3.9E-05 49.4 11.2 35 39-78 198-232 (444)
289 3e77_A Phosphoserine aminotran 90.0 0.19 6.5E-06 54.5 4.1 68 413-481 21-97 (377)
290 1nks_A Adenylate kinase; therm 88.9 0.38 1.3E-05 45.4 4.9 35 37-77 1-35 (194)
291 3bwn_A AT1G70560, L-tryptophan 88.2 0.63 2.2E-05 49.9 6.7 76 620-712 158-241 (391)
292 4a1f_A DNAB helicase, replicat 88.2 0.54 1.8E-05 50.2 6.0 35 39-78 47-81 (338)
293 2cdn_A Adenylate kinase; phosp 87.9 0.51 1.8E-05 45.5 5.2 33 29-62 12-44 (201)
294 3ez2_A Plasmid partition prote 87.5 0.39 1.3E-05 51.9 4.5 44 35-78 106-150 (398)
295 3nva_A CTP synthase; rossman f 87.2 1.6 5.5E-05 49.1 9.2 38 36-78 2-40 (535)
296 2q6t_A DNAB replication FORK h 86.6 4.1 0.00014 44.7 12.2 36 39-78 201-236 (444)
297 2w58_A DNAI, primosome compone 86.3 0.74 2.5E-05 44.2 5.3 35 38-78 55-89 (202)
298 1e6c_A Shikimate kinase; phosp 85.3 0.71 2.4E-05 43.0 4.4 26 36-62 1-26 (173)
299 3trf_A Shikimate kinase, SK; a 85.1 0.78 2.7E-05 43.4 4.7 26 36-62 4-29 (185)
300 3a8t_A Adenylate isopentenyltr 85.0 0.32 1.1E-05 52.1 2.0 24 38-62 41-64 (339)
301 3hr8_A Protein RECA; alpha and 84.8 7.6 0.00026 41.6 12.8 34 39-78 63-96 (356)
302 1q57_A DNA primase/helicase; d 84.3 7.5 0.00026 43.2 13.0 36 39-78 243-278 (503)
303 1xx6_A Thymidine kinase; NESG, 84.2 0.79 2.7E-05 44.8 4.3 36 39-80 10-45 (191)
304 3kb2_A SPBC2 prophage-derived 84.0 0.71 2.4E-05 42.7 3.8 25 37-62 1-25 (173)
305 2b8t_A Thymidine kinase; deoxy 83.9 0.8 2.7E-05 45.9 4.3 36 39-80 14-49 (223)
306 1qhx_A CPT, protein (chloramph 83.3 0.84 2.9E-05 42.7 4.0 24 38-62 4-27 (178)
307 2orw_A Thymidine kinase; TMTK, 83.2 1.1 3.6E-05 43.3 4.7 36 39-80 5-40 (184)
308 1w4r_A Thymidine kinase; type 83.0 0.98 3.3E-05 44.5 4.4 42 32-80 15-57 (195)
309 3iij_A Coilin-interacting nucl 82.8 1 3.5E-05 42.4 4.4 25 37-62 11-35 (180)
310 1xp8_A RECA protein, recombina 82.7 14 0.00048 39.6 13.8 34 39-78 76-109 (366)
311 2yvu_A Probable adenylyl-sulfa 82.6 1.3 4.4E-05 42.0 5.1 35 38-78 14-48 (186)
312 1via_A Shikimate kinase; struc 82.4 0.85 2.9E-05 42.9 3.7 25 37-62 4-28 (175)
313 1zuh_A Shikimate kinase; alpha 82.4 1.2 3.9E-05 41.5 4.6 25 37-62 7-31 (168)
314 3t61_A Gluconokinase; PSI-biol 82.3 0.98 3.4E-05 43.5 4.2 28 34-62 15-42 (202)
315 3p32_A Probable GTPase RV1496/ 82.0 1.6 5.5E-05 46.5 6.1 36 37-78 79-114 (355)
316 2iyv_A Shikimate kinase, SK; t 81.7 1.2 4E-05 42.1 4.3 24 38-62 3-26 (184)
317 1kht_A Adenylate kinase; phosp 81.5 1.6 5.5E-05 41.0 5.3 25 38-63 4-28 (192)
318 2j9r_A Thymidine kinase; TK1, 80.9 1.5 5.2E-05 43.7 5.0 37 39-81 30-66 (214)
319 2vli_A Antibiotic resistance p 80.7 0.91 3.1E-05 42.6 3.2 26 36-62 4-29 (183)
320 2kjq_A DNAA-related protein; s 80.0 1.3 4.3E-05 41.2 3.9 36 37-78 36-71 (149)
321 1yrb_A ATP(GTP)binding protein 79.5 2.4 8.2E-05 42.2 6.1 34 39-78 15-48 (262)
322 1ukz_A Uridylate kinase; trans 79.5 1.3 4.6E-05 42.4 4.0 29 33-62 11-39 (203)
323 2qgz_A Helicase loader, putati 78.7 1.4 4.8E-05 46.1 4.1 37 37-78 152-188 (308)
324 3bos_A Putative DNA replicatio 78.4 1.9 6.6E-05 41.8 4.8 36 37-78 52-87 (242)
325 3ec2_A DNA replication protein 78.4 1.2 4.2E-05 41.9 3.3 36 38-78 39-74 (180)
326 3io5_A Recombination and repai 77.5 13 0.00046 39.3 11.2 34 39-78 30-65 (333)
327 3pzx_A Formate--tetrahydrofola 77.3 2 6.7E-05 48.0 4.8 36 37-77 57-95 (557)
328 4eun_A Thermoresistant glucoki 76.6 1.7 5.7E-05 41.9 3.7 34 28-62 15-53 (200)
329 1qf9_A UMP/CMP kinase, protein 76.5 1.8 6.2E-05 40.6 3.9 25 37-62 6-30 (194)
330 2z0h_A DTMP kinase, thymidylat 75.8 2.2 7.5E-05 40.4 4.3 34 39-78 2-35 (197)
331 1ak2_A Adenylate kinase isoenz 75.8 2.1 7.2E-05 42.3 4.3 30 32-62 11-40 (233)
332 2if2_A Dephospho-COA kinase; a 75.2 2.4 8.1E-05 40.7 4.4 24 37-62 1-24 (204)
333 2r8r_A Sensor protein; KDPD, P 75.2 3 0.0001 42.0 5.2 33 41-78 9-41 (228)
334 2ze6_A Isopentenyl transferase 74.8 1.8 6E-05 43.8 3.5 25 37-62 1-25 (253)
335 1nn5_A Similar to deoxythymidy 74.2 3.2 0.00011 39.8 5.1 35 38-78 10-44 (215)
336 1g5t_A COB(I)alamin adenosyltr 74.1 2.2 7.4E-05 42.0 3.8 36 38-78 28-63 (196)
337 1kag_A SKI, shikimate kinase I 74.0 2.3 7.7E-05 39.5 3.8 24 38-62 5-28 (173)
338 3a4m_A L-seryl-tRNA(SEC) kinas 73.9 2.6 8.9E-05 42.6 4.5 33 37-75 4-36 (260)
339 2c95_A Adenylate kinase 1; tra 73.3 2.7 9.4E-05 39.6 4.3 25 37-62 9-33 (196)
340 2qt1_A Nicotinamide riboside k 72.5 2 6.8E-05 41.5 3.1 37 22-62 9-45 (207)
341 3lw7_A Adenylate kinase relate 72.4 2.9 9.9E-05 38.2 4.1 22 39-62 3-24 (179)
342 2plr_A DTMP kinase, probable t 72.2 3.9 0.00013 38.9 5.1 23 39-62 6-28 (213)
343 1gtv_A TMK, thymidylate kinase 72.2 1.2 4.2E-05 42.9 1.5 34 39-78 2-35 (214)
344 3crm_A TRNA delta(2)-isopenten 72.1 2.2 7.5E-05 45.2 3.5 24 38-62 6-29 (323)
345 2pbr_A DTMP kinase, thymidylat 72.0 3 0.0001 39.1 4.2 34 39-78 2-35 (195)
346 2pt5_A Shikimate kinase, SK; a 71.8 3.6 0.00012 37.9 4.6 23 39-62 2-24 (168)
347 1y63_A LMAJ004144AAA protein; 71.7 3.3 0.00011 39.3 4.4 25 37-62 10-34 (184)
348 3foz_A TRNA delta(2)-isopenten 71.5 2.4 8.3E-05 44.7 3.6 24 38-62 11-34 (316)
349 3cmu_A Protein RECA, recombina 71.4 27 0.00092 45.6 13.7 35 39-78 733-767 (2050)
350 2wwf_A Thymidilate kinase, put 71.4 3.9 0.00013 39.1 4.9 35 38-78 11-45 (212)
351 1gvn_B Zeta; postsegregational 71.2 3 0.0001 43.1 4.2 23 39-62 35-57 (287)
352 1zd8_A GTP:AMP phosphotransfer 71.1 2.6 9E-05 41.3 3.7 25 37-62 7-31 (227)
353 3t15_A Ribulose bisphosphate c 71.0 5.3 0.00018 41.2 6.1 32 38-78 37-68 (293)
354 3ake_A Cytidylate kinase; CMP 70.3 4 0.00014 38.8 4.7 24 38-62 3-26 (208)
355 1l8q_A Chromosomal replication 70.3 3.4 0.00012 42.8 4.5 36 37-78 37-72 (324)
356 2orv_A Thymidine kinase; TP4A 69.8 4.6 0.00016 40.8 5.1 38 38-81 20-57 (234)
357 2rhm_A Putative kinase; P-loop 69.7 3.1 0.0001 39.2 3.7 23 39-62 7-29 (193)
358 3exa_A TRNA delta(2)-isopenten 69.7 2.3 7.9E-05 45.0 3.0 24 38-62 4-27 (322)
359 2p65_A Hypothetical protein PF 69.5 3.3 0.00011 38.2 3.8 26 37-63 43-68 (187)
360 2bwj_A Adenylate kinase 5; pho 69.3 2.9 0.0001 39.5 3.4 24 38-62 13-36 (199)
361 1tev_A UMP-CMP kinase; ploop, 69.1 3 0.0001 39.1 3.5 23 39-62 5-27 (196)
362 1ly1_A Polynucleotide kinase; 68.5 3.1 0.00011 38.6 3.3 21 39-60 4-24 (181)
363 2jaq_A Deoxyguanosine kinase; 67.9 3.7 0.00013 38.8 3.9 23 39-62 2-24 (205)
364 1zak_A Adenylate kinase; ATP:A 67.7 3.9 0.00013 39.8 4.0 25 37-62 5-29 (222)
365 1jbk_A CLPB protein; beta barr 67.0 4.3 0.00015 37.3 4.0 25 37-62 43-67 (195)
366 1kgd_A CASK, peripheral plasma 66.5 4.3 0.00015 38.4 4.0 25 37-62 5-29 (180)
367 2pez_A Bifunctional 3'-phospho 66.5 5 0.00017 37.6 4.4 33 39-77 7-39 (179)
368 2dr3_A UPF0273 protein PH0284; 65.6 5.5 0.00019 38.8 4.7 34 39-78 25-58 (247)
369 2wsm_A Hydrogenase expression/ 65.6 6.2 0.00021 38.0 5.0 35 37-78 30-64 (221)
370 1uf9_A TT1252 protein; P-loop, 65.3 4 0.00014 38.7 3.5 23 37-60 8-30 (203)
371 3d3q_A TRNA delta(2)-isopenten 65.2 3.6 0.00012 43.9 3.4 24 38-62 8-31 (340)
372 1cke_A CK, MSSA, protein (cyti 64.9 5 0.00017 38.9 4.2 24 38-62 6-29 (227)
373 4edh_A DTMP kinase, thymidylat 64.7 6.5 0.00022 38.7 5.0 34 39-78 8-41 (213)
374 3be4_A Adenylate kinase; malar 64.3 5.5 0.00019 38.8 4.3 24 38-62 6-29 (217)
375 1knq_A Gluconate kinase; ALFA/ 63.7 5.6 0.00019 36.9 4.1 25 37-62 8-32 (175)
376 3ney_A 55 kDa erythrocyte memb 63.1 5.5 0.00019 39.0 4.1 25 37-62 19-43 (197)
377 3syl_A Protein CBBX; photosynt 63.0 6.8 0.00023 39.9 4.9 26 37-63 67-92 (309)
378 1aky_A Adenylate kinase; ATP:A 63.0 5.6 0.00019 38.6 4.1 24 38-62 5-28 (220)
379 1uj2_A Uridine-cytidine kinase 62.5 4.5 0.00015 40.5 3.4 24 38-62 23-46 (252)
380 2qor_A Guanylate kinase; phosp 62.5 5.8 0.0002 38.1 4.1 23 39-62 14-36 (204)
381 3uk6_A RUVB-like 2; hexameric 62.5 21 0.00072 37.2 8.8 24 38-62 71-94 (368)
382 3v9p_A DTMP kinase, thymidylat 62.1 3.5 0.00012 41.3 2.4 34 39-78 27-64 (227)
383 2qz4_A Paraplegin; AAA+, SPG7, 62.0 8.8 0.0003 37.9 5.4 25 37-62 39-63 (262)
384 3tau_A Guanylate kinase, GMP k 61.9 5.1 0.00017 38.8 3.6 24 38-62 9-32 (208)
385 3cm0_A Adenylate kinase; ATP-b 61.7 5.6 0.00019 37.2 3.7 23 39-62 6-28 (186)
386 1rz3_A Hypothetical protein rb 61.6 7.4 0.00025 37.4 4.7 33 39-77 24-56 (201)
387 3uie_A Adenylyl-sulfate kinase 61.5 7.1 0.00024 37.4 4.5 24 38-62 26-49 (200)
388 1rj9_A FTSY, signal recognitio 61.4 14 0.00047 38.5 7.0 35 37-77 102-136 (304)
389 3fb4_A Adenylate kinase; psych 61.2 5.8 0.0002 38.2 3.8 23 39-62 2-24 (216)
390 1u94_A RECA protein, recombina 61.1 6.7 0.00023 41.9 4.6 35 38-78 64-98 (356)
391 3qm2_A Phosphoserine aminotran 60.9 9.8 0.00033 41.0 5.9 75 400-481 28-111 (386)
392 2grj_A Dephospho-COA kinase; T 60.8 5.8 0.0002 38.4 3.7 24 38-62 13-36 (192)
393 2chg_A Replication factor C sm 60.8 5.8 0.0002 37.4 3.7 24 39-63 40-63 (226)
394 3m5u_A Phosphoserine aminotran 60.7 11 0.00037 40.3 6.2 64 418-481 17-89 (361)
395 2bjv_A PSP operon transcriptio 60.6 6.8 0.00023 39.2 4.4 35 38-78 30-64 (265)
396 3eph_A TRNA isopentenyltransfe 60.2 5.2 0.00018 43.7 3.6 24 38-62 3-26 (409)
397 3h4m_A Proteasome-activating n 60.2 8.2 0.00028 38.8 4.9 24 38-62 52-75 (285)
398 2w0m_A SSO2452; RECA, SSPF, un 60.2 6.4 0.00022 37.8 4.0 34 39-78 25-58 (235)
399 1jjv_A Dephospho-COA kinase; P 60.1 5 0.00017 38.4 3.1 23 37-60 2-24 (206)
400 1d2n_A N-ethylmaleimide-sensit 59.5 7.5 0.00026 39.1 4.5 24 38-62 65-88 (272)
401 3n70_A Transport activator; si 59.3 6.7 0.00023 35.6 3.7 31 39-75 26-56 (145)
402 4iin_A 3-ketoacyl-acyl carrier 59.2 4.2 0.00014 41.0 2.5 57 8-76 2-58 (271)
403 2qmh_A HPR kinase/phosphorylas 59.2 2 6.8E-05 42.6 0.0 24 38-62 35-58 (205)
404 2v54_A DTMP kinase, thymidylat 59.2 5.9 0.0002 37.6 3.5 24 38-62 5-28 (204)
405 1a7j_A Phosphoribulokinase; tr 58.8 3.9 0.00013 42.3 2.2 25 37-62 5-29 (290)
406 3dl0_A Adenylate kinase; phosp 58.7 5.9 0.0002 38.2 3.4 23 39-62 2-24 (216)
407 3lv8_A DTMP kinase, thymidylat 58.5 9.3 0.00032 38.4 4.9 34 39-78 29-63 (236)
408 1e4v_A Adenylate kinase; trans 58.3 8.6 0.00029 37.2 4.5 23 39-62 2-24 (214)
409 3e1s_A Exodeoxyribonuclease V, 58.0 14 0.00047 42.1 6.8 36 38-79 205-240 (574)
410 1ex7_A Guanylate kinase; subst 57.9 11 0.00036 36.5 5.0 23 39-62 3-25 (186)
411 1fnn_A CDC6P, cell division co 57.7 10 0.00035 39.6 5.3 35 38-78 45-80 (389)
412 1q3t_A Cytidylate kinase; nucl 57.4 9.7 0.00033 37.5 4.8 23 39-62 18-40 (236)
413 2p5t_B PEZT; postsegregational 57.2 6.6 0.00022 39.4 3.5 24 38-62 33-56 (253)
414 3r20_A Cytidylate kinase; stru 57.1 7.7 0.00026 39.0 4.0 24 38-62 10-33 (233)
415 2hox_A ALLIIN lyase 1; cystein 57.0 5.9 0.0002 42.9 3.4 53 654-712 219-275 (427)
416 1p9r_A General secretion pathw 56.9 20 0.0007 39.0 7.7 23 39-62 169-191 (418)
417 3con_A GTPase NRAS; structural 56.7 6.3 0.00022 36.7 3.1 21 39-60 23-43 (190)
418 1ofh_A ATP-dependent HSL prote 56.6 11 0.00038 38.0 5.2 24 38-62 51-74 (310)
419 3cmw_A Protein RECA, recombina 56.1 73 0.0025 41.0 13.3 34 40-78 734-767 (1706)
420 1um8_A ATP-dependent CLP prote 56.0 11 0.00039 39.8 5.3 25 37-62 72-96 (376)
421 3hjn_A DTMP kinase, thymidylat 55.7 9.6 0.00033 36.9 4.3 32 41-78 4-35 (197)
422 4fcw_A Chaperone protein CLPB; 55.4 17 0.00057 36.9 6.4 34 39-78 49-82 (311)
423 3tlx_A Adenylate kinase 2; str 55.1 8.2 0.00028 38.4 3.9 23 39-62 31-53 (243)
424 3ftp_A 3-oxoacyl-[acyl-carrier 55.1 5.3 0.00018 40.5 2.4 40 28-77 19-58 (270)
425 2f6r_A COA synthase, bifunctio 55.1 9.4 0.00032 39.0 4.4 27 34-62 72-98 (281)
426 2vo1_A CTP synthase 1; pyrimid 55.0 11 0.00037 38.9 4.6 38 36-78 22-60 (295)
427 4tmk_A Protein (thymidylate ki 54.8 12 0.00042 36.8 5.0 34 39-78 5-39 (213)
428 1lv7_A FTSH; alpha/beta domain 54.7 12 0.00042 37.1 5.0 24 38-62 46-69 (257)
429 2vos_A Folylpolyglutamate synt 54.2 9 0.00031 42.6 4.3 35 36-78 63-97 (487)
430 4hlc_A DTMP kinase, thymidylat 53.9 15 0.00051 35.8 5.4 32 40-78 5-36 (205)
431 2dyk_A GTP-binding protein; GT 53.5 8.1 0.00028 34.6 3.2 22 37-59 1-22 (161)
432 3nwj_A ATSK2; P loop, shikimat 53.4 11 0.00036 38.2 4.4 25 37-62 48-72 (250)
433 2zts_A Putative uncharacterize 53.3 7.7 0.00026 37.8 3.2 36 39-78 31-66 (251)
434 3eie_A Vacuolar protein sortin 53.3 25 0.00086 36.3 7.4 25 37-62 51-75 (322)
435 2c5m_A CTP synthase; cytidine 53.2 11 0.00039 38.5 4.4 38 36-78 22-60 (294)
436 2hf9_A Probable hydrogenase ni 53.0 13 0.00046 35.7 4.9 24 38-62 39-62 (226)
437 3b9q_A Chloroplast SRP recepto 52.9 18 0.0006 37.6 6.1 42 30-77 92-134 (302)
438 1sxj_A Activator 1 95 kDa subu 52.8 26 0.00089 39.0 7.9 33 37-78 77-109 (516)
439 1zp6_A Hypothetical protein AT 52.6 8.9 0.0003 36.0 3.4 24 38-62 10-33 (191)
440 3hws_A ATP-dependent CLP prote 52.1 15 0.0005 38.8 5.4 25 37-62 51-75 (363)
441 3cmw_A Protein RECA, recombina 51.9 96 0.0033 39.9 13.5 46 37-93 1431-1476(1706)
442 2bbw_A Adenylate kinase 4, AK4 51.7 11 0.00038 37.3 4.1 25 37-62 27-51 (246)
443 1njg_A DNA polymerase III subu 51.6 10 0.00035 36.0 3.8 25 38-63 46-70 (250)
444 1cr0_A DNA primase/helicase; R 51.1 13 0.00044 37.8 4.7 35 39-78 37-71 (296)
445 2z4s_A Chromosomal replication 51.1 9.6 0.00033 41.7 3.8 38 37-78 130-167 (440)
446 4ag6_A VIRB4 ATPase, type IV s 51.0 14 0.00048 39.4 5.1 37 37-79 35-71 (392)
447 2r2a_A Uncharacterized protein 50.8 18 0.00062 35.2 5.4 26 36-62 4-29 (199)
448 3pfi_A Holliday junction ATP-d 50.7 14 0.00047 38.2 4.9 24 38-62 56-79 (338)
449 3pxi_A Negative regulator of g 50.3 22 0.00076 41.5 7.1 34 39-78 523-556 (758)
450 1odf_A YGR205W, hypothetical 3 49.8 11 0.00038 38.9 3.9 24 39-63 33-56 (290)
451 2zr9_A Protein RECA, recombina 49.7 13 0.00046 39.4 4.6 35 38-78 62-96 (349)
452 3e2i_A Thymidine kinase; Zn-bi 49.6 13 0.00044 37.1 4.1 37 39-81 30-66 (219)
453 2xb4_A Adenylate kinase; ATP-b 49.6 11 0.00036 37.0 3.6 23 39-62 2-24 (223)
454 4imr_A 3-oxoacyl-(acyl-carrier 49.5 3.6 0.00012 41.9 0.1 34 34-77 30-63 (275)
455 2og2_A Putative signal recogni 49.4 26 0.00087 37.5 6.8 42 30-77 149-191 (359)
456 4e22_A Cytidylate kinase; P-lo 49.3 13 0.00046 37.1 4.4 25 37-62 27-51 (252)
457 1g8f_A Sulfate adenylyltransfe 49.3 14 0.00047 41.6 4.8 23 39-62 397-419 (511)
458 3pvs_A Replication-associated 49.3 14 0.00049 40.5 4.9 24 38-62 51-74 (447)
459 1ltq_A Polynucleotide kinase; 49.3 9.7 0.00033 38.7 3.3 23 39-62 4-26 (301)
460 3tr0_A Guanylate kinase, GMP k 48.9 11 0.00039 35.6 3.6 24 38-62 8-31 (205)
461 2j41_A Guanylate kinase; GMP, 48.8 9.2 0.00031 36.2 2.9 23 39-62 8-30 (207)
462 4eaq_A DTMP kinase, thymidylat 48.8 20 0.00067 35.4 5.4 32 39-77 28-59 (229)
463 3a00_A Guanylate kinase, GMP k 48.5 10 0.00036 35.8 3.2 23 39-62 3-25 (186)
464 1vht_A Dephospho-COA kinase; s 48.4 12 0.00041 36.1 3.7 22 39-62 6-27 (218)
465 1m7g_A Adenylylsulfate kinase; 48.1 11 0.00039 36.2 3.5 34 39-77 27-60 (211)
466 2qby_A CDC6 homolog 1, cell di 48.0 19 0.00066 37.2 5.5 35 38-78 46-83 (386)
467 1x6v_B Bifunctional 3'-phospho 47.9 14 0.00048 42.6 4.7 33 39-77 54-86 (630)
468 3d8b_A Fidgetin-like protein 1 47.9 15 0.0005 38.8 4.6 25 37-62 117-141 (357)
469 2qby_B CDC6 homolog 3, cell di 47.8 12 0.0004 39.2 3.8 25 38-63 46-70 (384)
470 3te6_A Regulatory protein SIR3 47.7 10 0.00035 39.9 3.3 25 38-63 46-70 (318)
471 1w78_A FOLC bifunctional prote 47.7 15 0.0005 39.8 4.6 34 37-78 49-82 (422)
472 3b9p_A CG5977-PA, isoform A; A 47.5 11 0.00039 38.0 3.6 25 37-62 54-78 (297)
473 1ixz_A ATP-dependent metallopr 47.4 12 0.00042 37.0 3.7 24 38-62 50-73 (254)
474 2v1u_A Cell division control p 46.9 23 0.00079 36.7 5.9 24 38-62 45-68 (387)
475 3cf0_A Transitional endoplasmi 46.7 16 0.00056 37.4 4.6 24 38-62 50-73 (301)
476 2h92_A Cytidylate kinase; ross 46.6 15 0.00052 35.3 4.1 23 39-62 5-27 (219)
477 1xwi_A SKD1 protein; VPS4B, AA 46.6 15 0.0005 38.4 4.2 25 37-62 45-69 (322)
478 1ojl_A Transcriptional regulat 46.4 15 0.00053 37.9 4.4 34 39-78 27-60 (304)
479 2fz4_A DNA repair protein RAD2 46.4 17 0.00059 36.0 4.6 33 38-79 109-141 (237)
480 2r6a_A DNAB helicase, replicat 46.0 13 0.00044 40.8 3.9 36 39-78 204-239 (454)
481 1lvg_A Guanylate kinase, GMP k 45.6 14 0.00048 35.4 3.7 24 38-62 5-28 (198)
482 3asz_A Uridine kinase; cytidin 45.6 14 0.00048 35.3 3.7 23 39-62 8-30 (211)
483 3vfd_A Spastin; ATPase, microt 45.1 18 0.0006 38.6 4.7 25 37-62 148-172 (389)
484 3nrs_A Dihydrofolate:folylpoly 45.0 22 0.00076 38.7 5.6 35 36-78 51-85 (437)
485 2c9o_A RUVB-like 1; hexameric 44.9 32 0.0011 37.5 6.9 24 38-62 64-87 (456)
486 2lkc_A Translation initiation 44.8 20 0.00068 32.5 4.5 26 33-59 4-29 (178)
487 1hqc_A RUVB; extended AAA-ATPa 44.7 14 0.00046 37.8 3.6 24 38-62 39-62 (324)
488 2qp9_X Vacuolar protein sortin 44.0 18 0.00063 38.1 4.6 25 37-62 84-108 (355)
489 1z6g_A Guanylate kinase; struc 43.9 15 0.00051 35.9 3.6 23 39-62 25-47 (218)
490 2ew1_A RAS-related protein RAB 43.8 14 0.00048 35.3 3.4 22 38-60 27-48 (201)
491 3c8u_A Fructokinase; YP_612366 43.7 14 0.00046 35.6 3.2 24 39-63 24-47 (208)
492 2r62_A Cell division protease 43.6 9.5 0.00032 38.0 2.2 23 39-62 46-68 (268)
493 1jbw_A Folylpolyglutamate synt 43.6 19 0.00064 39.1 4.7 35 36-78 38-72 (428)
494 1qvr_A CLPB protein; coiled co 43.2 27 0.00092 41.5 6.4 34 39-78 590-623 (854)
495 1tue_A Replication protein E1; 43.1 14 0.00049 36.6 3.2 24 38-62 59-82 (212)
496 3fdi_A Uncharacterized protein 42.8 21 0.00073 34.4 4.5 24 38-62 7-30 (201)
497 3rkr_A Short chain oxidoreduct 42.7 11 0.00038 37.6 2.5 48 19-77 12-59 (262)
498 2z43_A DNA repair and recombin 42.4 23 0.00078 36.8 5.0 35 38-78 108-148 (324)
499 1nij_A Hypothetical protein YJ 42.4 12 0.00043 38.8 2.9 36 36-79 3-38 (318)
500 2a5j_A RAS-related protein RAB 42.3 24 0.00081 32.9 4.6 20 39-59 23-42 (191)
No 1
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=6.2e-107 Score=969.60 Aligned_cols=662 Identities=69% Similarity=1.158 Sum_probs=520.8
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC-----CCceeEEcccccCCCCCC
Q 005009 14 RRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-----NKKFVYLKPIQTGYPHDS 88 (719)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~-----g~~v~~~KPi~~g~~~~~ 88 (719)
--++-|-.|+++.-+.|+.+++++++|||+||+||||||+||+|||++|+ ++ |++|+|||||++|+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~gt~s~vGKT~vt~gL~r~l~-----~~~~~~~G~~V~~fKPv~~g~~~~~ 85 (831)
T 4a0g_A 11 SGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFL-----LQQPSSSATKLLYLKPIQTGFPSDS 85 (831)
T ss_dssp ----------------CCEEECSSCEEEEEESSSSSCHHHHHHHHHHHHH-----SCSSCCTTCEEEEEEEEECSTTTCC
T ss_pred cCccccccccCCCCCCCccCccccccEEEEECCCCCCHHHHHHHHHHHHH-----hcccccCCceEEEEcccccCCCcCc
Confidence 34565666666656677788899999999999999999999999999995 77 999999999999988888
Q ss_pred hHHHHHHhcCCCcccc----------CCCccccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCC
Q 005009 89 DSRFLFTKLPSLSLRR----------NFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGE 158 (719)
Q Consensus 89 d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (719)
|..++.+.+.++..++ ..+.|...+| ++.++. ..+++ +-+++..+..++
T Consensus 86 ~~~~~~~~~~~~~~~n~da~~~~~~~~~~~~~~~~~-~~l~~~-----------~~~~~------~~~~~~~~~~~~--- 144 (831)
T 4a0g_A 86 DSRFVFSKLDSLSLRRQIPISISNSVLHSSLPAAKS-LGLNVE-----------VSESG------MCSLNFRDEKTV--- 144 (831)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEEEEEEEEHHHHHH-HTCCCC-----------BCTTS------EEEEEEEEEECC---
T ss_pred chHHHHHhhccccccchhHHHHHHHHcCCChhhHhh-cccCCc-----------ccCCc------eEeecccccccc---
Confidence 8877776542210000 0112223333 222221 11112 112222222221
Q ss_pred CCCccccccccceeecccCcChHHHHhHhcCCCCCHHHHHHHHHHHHhccccccccc--cccCcCcEEEEeCCCCCCCCC
Q 005009 159 EDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESES--ERGKMEILCIVETAGGVASPG 236 (719)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~d~vivEGagG~~~p~ 236 (719)
.....+.+.++|.|++|++||++++++ +..++.+.|.+.|.+..+.. ++. .....+|++|||||||+++|+
T Consensus 145 --~~~~~~~~~~~~~~~~p~sp~~aa~~~-~~~~~~~~i~~~~~~~l~~~----a~~~~~~~~~~D~vvVEGaGGl~~p~ 217 (831)
T 4a0g_A 145 --TGAPELLCKTLYAWEAAISPHLAAERE-NATVEDSVVLQMIEKCLKEE----MECGVKSEKSDLLCLVETAGGVASPG 217 (831)
T ss_dssp --TTSCEEEEEEEEECSSSSCHHHHHHHT-TCCCCHHHHHHHHHHHHHHH----C---------CEEEEEECCSSTTCBC
T ss_pred --cccccccccceeeecCCcCHHHHHHHc-CCCCCHHHHHHHHHHHHHhh----hhccccccccCCEEEEECCCCccCCC
Confidence 123456789999999999999999999 88899999999999844310 000 000138999999999999999
Q ss_pred CCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCcEEecCCCCCC
Q 005009 237 PSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQD 316 (719)
Q Consensus 237 ~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlglP~~~~~ 316 (719)
+.+.+++|||+.|++|||||+++++|++|++++++++++.+|++|.|||+|+....+.+.+.+++++++||..||..|.+
T Consensus 218 ~~~~~~adla~~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~~~~l~~~l~~~~~v~vLg~lP~~ 297 (831)
T 4a0g_A 218 PSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKD 297 (831)
T ss_dssp TTSCBHHHHTGGGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCTHHHHHHHTTTSSCEEEECCCCCC
T ss_pred CCCccHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchhHHHHHHHHHHhCCCceeeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999889999999998765555444444545
Q ss_pred CcchhhhhhhhchhhhhhHHHHHHHHHHHHHHhhcccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCc
Q 005009 317 SSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNK 396 (719)
Q Consensus 317 ~~~~~~~~l~~~~~~v~~Ll~~l~~~~~~r~~rl~~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~ 396 (719)
.+.+|.+|++.....+.++++.|..++.+|+.+++.+.+++.+++||||++++.+....|++|++++|.|+|+||.|||.
T Consensus 298 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~ 377 (831)
T 4a0g_A 298 PSDDLIEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNS 377 (831)
T ss_dssp TTCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHS
T ss_pred CHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCc
Confidence 56789999999878899999999999999999999999999999999999998766667999999999999999999975
Q ss_pred ccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHH
Q 005009 397 FIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476 (719)
Q Consensus 397 ~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~ 476 (719)
++++|||++||||++++||++||+|++|+++|++++.|+++.+++++++.+|||+|++++|.+.+++|||+||||||||+
T Consensus 378 ~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~ 457 (831)
T 4a0g_A 378 SLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEI 457 (831)
T ss_dssp EEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHH
T ss_pred cchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHH
Confidence 55589999999999999998899999999999999999877678899999999999999986657899999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
|||+|+|+|++++|.. +++..+.++|.+||+++++|||+|++++++|+...|+..++.+|+.++++++++|...+.
T Consensus 458 AlK~A~r~~~~~~g~~----~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 533 (831)
T 4a0g_A 458 ALKMAFRKFCVDHNFC----EATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLS 533 (831)
T ss_dssp HHHHHHHHHHHTTTC-------------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEE
T ss_pred HHHHHHHHHHhhcCCC----ccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCcccccc
Confidence 9999977787766530 000001136899999999999999999999998777764345777777788888876666
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
+++++++.|+.|+... ..+.+|++.++.|...++.+.+...|.+.|++.|++.....+++++||||+|||+||+||++
T Consensus 534 ~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~ 611 (831)
T 4a0g_A 534 NGSWNISLPESFSEIA--PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMH 611 (831)
T ss_dssp TTEEEEECCTTSCCCC--SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSE
T ss_pred CCceEecCCccccccc--cccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCc
Confidence 7888999998876421 11234666544454334445667788889998887421113468999999999669999999
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcCC
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~~ 714 (719)
++|++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|||||+|+|++++++++++.|..+
T Consensus 612 ~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~ 689 (831)
T 4a0g_A 612 MVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGD 689 (831)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSS
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999764
No 2
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=4.5e-66 Score=582.47 Aligned_cols=304 Identities=19% Similarity=0.233 Sum_probs=262.1
Q ss_pred hcccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhh
Q 005009 350 LCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (719)
Q Consensus 350 l~~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~ 429 (719)
.+.+.+++..++||||++++.+.+..|+||++++|. ||||.||| +|||+++|+|++++||+ ||+|++|+++|+
T Consensus 24 ~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~ 96 (473)
T 4e3q_A 24 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGP--YIVDVNGR----RYLDANSGLWNMVAGFD-HKGLIDAAKAQY 96 (473)
T ss_dssp CCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETT--EEEETTCC----EEEETTTTTTTCTTCSC-CHHHHHHHHHHH
T ss_pred cccHHHHHhhhcCCCCCChhhhccCCCEEEEeeecC--EEEeCCCC----EEEEcccCHHHhhccCC-CHHHHHHHHHHH
Confidence 345777888899999999887766789999998886 79999999 99999999999999999 999999999999
Q ss_pred hhccccc-CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceE
Q 005009 430 ARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (719)
Q Consensus 430 ~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~k 508 (719)
+++.+.. +....+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|+.++|. ++|.+
T Consensus 97 ~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGsEA~e~AiKlA-r~~~~~~g~------------~~r~~ 162 (473)
T 4e3q_A 97 ERFPGYHAFFGRMSDQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVKML-WFLHAAEGK------------PQKRK 162 (473)
T ss_dssp HHCCCCCCCTTEEEHHHHHHHHHHHHHSSCS-SCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCE
T ss_pred HhcccccccccccCHHHHHHHHHHHhhCCCC-ccEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCcce
Confidence 9987653 33456899999999999999865 789999999999999999999 788777765 78899
Q ss_pred EEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhh
Q 005009 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (719)
Q Consensus 509 II~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (719)
||+|+++|||+|.+++++|+.. ++.. +.+|. ++..+++.|++|+.. +.
T Consensus 163 ii~~~~~yHG~t~~a~s~tg~~-~~~~------------~~~~~----~~~~~~~~p~~~~~~----------~~----- 210 (473)
T 4e3q_A 163 ILTRWNAYHGVTAVSASMTGKP-YNSV------------FGLPL----PGFVHLTCPHYWRYG----------EE----- 210 (473)
T ss_dssp EEEETTCCCCSSHHHHHHSCCG-GGGG------------GTCSC----TTEEEECCCCHHHHS----------CT-----
T ss_pred EEEeeceECCCccccccccccc-cccc------------cCCCC----CcccccCCCcccccc----------cc-----
Confidence 9999999999999999999854 2221 12222 356788888887642 11
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc
Q 005009 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (719)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR 668 (719)
....+.+...+.+.+++.+.+ .++++|||||+||| ||+||+++||++||++||++|++||+|||+|||||||||
T Consensus 211 -~~~~~~~~~~~~~~l~~~i~~----~~~~~iAavi~EPi-qg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGR 284 (473)
T 4e3q_A 211 -GETEEQFVARLARELEETIQR----EGADTIAGFFAEPV-MGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGR 284 (473)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSST
T ss_pred -cchhhHHHHHHHHHHHHHHHh----hCCCceEEEEeCCc-cCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCc
Confidence 112345566667788888875 56789999999998 999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 669 tG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
||+||+++++||+|||+|+||+|||||+|+||+++++++++.|.
T Consensus 285 tG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~ 328 (473)
T 4e3q_A 285 TGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLE 328 (473)
T ss_dssp TSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHH
T ss_pred ccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhc
Confidence 99999999999999999999999999999999999999999875
No 3
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=9.8e-60 Score=528.79 Aligned_cols=272 Identities=24% Similarity=0.280 Sum_probs=227.2
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. ||||.||| +||||++|+|++++||| ||+|++|+++|++++.|..+....++...+|+|+|++
T Consensus 46 ~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~ 118 (456)
T 4atq_A 46 VPVYVEDADGG--IIRDVDGN----SFIDLGSGIAVTSVGAS-DPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNR 118 (456)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCCeEEeeecC--EEEeCCCC----EEEEccccHHHHhcCCC-CHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHH
Confidence 47788998886 89999999 99999999999999999 9999999999999998877666678999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC-CC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~-~~ 533 (719)
++|.+.+++|+|+||||||||+|||+| |.+++| .+||+|+++|||+|.+++++++... ++
T Consensus 119 ~~p~~~~~~v~f~~sGsEA~e~AlklA-r~~t~r------------------~~ii~~~~~yHG~t~~als~t~~~~~~~ 179 (456)
T 4atq_A 119 LTPGDHAKRTVLFNSGAEAVENAVKVA-RLATGR------------------DAVVAFDHAYHGRTNLTMALTAKAMPYK 179 (456)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCCCCCcEEEEeCChHHHHHHHHHHH-hhhhcC------------------CeEEEEecccCCccccccccccCccccc
Confidence 998655789999999999999999999 788765 5999999999999999999997643 22
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
. .++++ .++..++|+|++++... .+ ....+....+.+.+++.
T Consensus 180 ~--------~~~p~--------~~~~~~~p~~~~~~~~~--------~~--------~~~~~~~~~~~~~~e~~------ 221 (456)
T 4atq_A 180 T--------NFGPF--------APEVYRMPMSYPFREEN--------PE--------ITGAEAAKRAITMIEKQ------ 221 (456)
T ss_dssp T--------TSCSC--------CSSEEEECCCCGGGCSS--------TT--------CCHHHHHHHHHHHHHHH------
T ss_pred c--------CCCCc--------cccceecccccccccCC--------Cc--------ccHHHHHHHHHHHHHHh------
Confidence 2 11111 13456777776664310 10 01112222233333332
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+||+++++||+|||+|+||+|||
T Consensus 222 -~~~~~iAAvivEPi-qg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lgg 299 (456)
T 4atq_A 222 -IGGDQVAAIIIEPI-QGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAG 299 (456)
T ss_dssp -TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGT
T ss_pred -hcCCceEEEEeccc-cCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccC
Confidence 24679999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 300 g-~P~~av~~~~~i~~~~~~ 318 (456)
T 4atq_A 300 G-LPLSAITGRADLLDAVHP 318 (456)
T ss_dssp T-SSCEEEEEEHHHHTTSCT
T ss_pred c-CCceeeEecHHHHhcccc
Confidence 9 699999999999998854
No 4
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=4.5e-55 Score=489.99 Aligned_cols=287 Identities=18% Similarity=0.182 Sum_probs=239.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccc
Q 005009 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (719)
Q Consensus 331 ~v~~Ll~~l~~~~~~r~~rl~~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~ 410 (719)
.+++.+.....+|.++.++++.+.+++.+.+..-.+.....-...|+++++++|. ||||.||| +|||+++|||+
T Consensus 25 ~~~~~~~~~~~~~~~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~ 98 (454)
T 4ao9_A 25 AIDQALADAYRRFTDANPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGA--ALWDADGH----RYADFIAEYTA 98 (454)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETT--EEEETTCC----EEEESSGGGGT
T ss_pred hhhhhHHHHHHHHhhcCcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecC--EEEECCCC----EEEEccccHHh
Confidence 3455666678899999999999999999987543222111112358899998886 79999999 99999999999
Q ss_pred cCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccc
Q 005009 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
+++||+ ||+|++|+++|+++..+.. ..++...+|+++|++.+|. +++|+|+||||||||+|||+| |.|++|
T Consensus 99 ~~lGH~-hp~v~~Av~~q~~~~~~~~---~~~~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~AiklA-r~~tgr-- 169 (454)
T 4ao9_A 99 GVYGHS-APEIRDAVIEAMQGGINLT---GHNLLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTAA-LHFTGR-- 169 (454)
T ss_dssp TTTCSC-CHHHHHHHHHHHHTCSCCC---SEESSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHTC--
T ss_pred hcccCC-CHHHHHHHHHHHhcCCCcc---CCcHHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHHH-HhcccC--
Confidence 999999 9999999999999876543 3467788999999999874 799999999999999999999 888765
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhh
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (719)
.+||+|+++|||+|.++++.++...+.. ....
T Consensus 170 ----------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~-------------------------~~~~------- 201 (454)
T 4ao9_A 170 ----------------RKIVVFSGGYHGGVLGFGARPSPTTVPF-------------------------DFLV------- 201 (454)
T ss_dssp ----------------CEEEEETTCBCSTTCBBSSSBCTTSCCS-------------------------EEEE-------
T ss_pred ----------------CeEEEEeCCcCCccccccccccCccCCC-------------------------Cccc-------
Confidence 4899999999999998877664321110 0011
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
++|||. +.+++.|++ .+++|||||+||| ||++|+++|+++||++||++|
T Consensus 202 -------~p~nd~------------------~~l~~~l~~-----~~~~iAavIvEPv-~g~~G~~~p~~~fL~~lr~lc 250 (454)
T 4ao9_A 202 -------LPYNDA------------------QTARAQIER-----HGPEIAVVLVEPM-QGASGCIPGQPDFLQALRESA 250 (454)
T ss_dssp -------ECTTCH------------------HHHHHHHHH-----TGGGEEEEEECSE-ESTTTCEECCHHHHHHHHHHH
T ss_pred -------CCCchH------------------HHHHHHHhh-----cCCceEEEEeccc-cCCCCccCCchhhHHHHHHHH
Confidence 225652 566777774 4678999999998 999999999999999999999
Q ss_pred HhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcCC
Q 005009 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 651 ~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~~ 714 (719)
++||++||+||||| ||||++|+++++||+|||+|+||+|||| +|+||+++++++++.|...
T Consensus 251 ~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~~ 311 (454)
T 4ao9_A 251 TQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPR 311 (454)
T ss_dssp HHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCTT
T ss_pred hhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhhc
Confidence 99999999999999 5999999999999999999999999999 6999999999999998653
No 5
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=1.9e-51 Score=463.50 Aligned_cols=304 Identities=21% Similarity=0.233 Sum_probs=256.4
Q ss_pred hcccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhh
Q 005009 350 LCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (719)
Q Consensus 350 l~~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~ 429 (719)
+.++.+++.+++||||++++.+....|.++++++|. |+||.||+ +||||++++|++++||+ ||+|++|+++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~G~----~ylD~~s~~~~~~lGh~-~p~v~~A~~~~l 83 (476)
T 3i5t_A 11 AGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGI--YVHTEDGR----RLIDGPAGMWCAQVGYG-RREIVDAMAHQA 83 (476)
T ss_dssp --CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHH
T ss_pred chHHHhhcccccccCcccccccccCCCeeEEEeecC--EEEECCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHH
Confidence 346777788889999999887766689999998886 79999999 99999999999999999 999999999999
Q ss_pred hhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEE
Q 005009 430 ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509 (719)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kI 509 (719)
+++.+.....+.++...+|+++|++..|.+ .++|+|+|||+|||+.|||++ +.+...+|. ++|.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Aik~a-~~~~~~~g~------------~~~~~v 149 (476)
T 3i5t_A 84 MVLPYASPWYMATSPAARLAEKIATLTPGD-LNRIFFTTGGSTAVDSALRFS-EFYNNVLGR------------PQKKRI 149 (476)
T ss_dssp HHCCCCCTTTCBCHHHHHHHHHHHTTSSTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEE
T ss_pred HhccCcccCccCCHHHHHHHHHHHhcCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCEE
Confidence 998765433567899999999999998744 689999999999999999999 666555443 567899
Q ss_pred EEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhc
Q 005009 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589 (719)
Q Consensus 510 I~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~ 589 (719)
|+++++|||.|.+++++++...|+.. +.++ .++..+++.|..|++ ++
T Consensus 150 i~~~~~yHg~~~~~~~~~~~~~~~~~------------~~~~----~~~~~~~~~p~~~~~---------~~-------- 196 (476)
T 3i5t_A 150 IVRYDGYHGSTALTAACTGRTGNWPN------------FDIA----QDRISFLSSPNPRHA---------GN-------- 196 (476)
T ss_dssp EEETTCCCCSSHHHHHTCCCGGGCTT------------SCCC----CTTEEEECCCCGGGC---------TT--------
T ss_pred EEEcCCcCcCChhhccccCChhhccc------------cCCC----CCCcEEeCCCccccc---------CC--------
Confidence 99999999999999999987655542 1111 134567777766542 11
Q ss_pred ccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcccc
Q 005009 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669 (719)
Q Consensus 590 ~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt 669 (719)
.+.+.+...+.+.|++.+.+ .+++++++||+||+ |+++|++++|++||++|+++|++||++||+|||||||||+
T Consensus 197 -~~~~~~~~~~~~~le~~i~~----~~~~~~aavi~ep~-~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~ 270 (476)
T 3i5t_A 197 -RSQEAFLDDLVQEFEDRIES----LGPDTIAAFLAEPI-LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC 270 (476)
T ss_dssp -SCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred -CchHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc
Confidence 12345556667889988874 23468999999998 9999999999999999999999999999999999999999
Q ss_pred Ccccccc-ccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 670 GVETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 670 G~~~a~e-~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|++|+++ ++|+.|||+|+||+|||||+|+|++++++++++.|..
T Consensus 271 G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~ 315 (476)
T 3i5t_A 271 GEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISG 315 (476)
T ss_dssp SSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSG
T ss_pred cCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhc
Confidence 9999999 9999999999999999998899999999999998864
No 6
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=1.5e-51 Score=463.97 Aligned_cols=298 Identities=20% Similarity=0.288 Sum_probs=249.7
Q ss_pred chhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc
Q 005009 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (719)
Q Consensus 354 ~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~ 433 (719)
.+++.+++||||++++.+....|+++++++|. |+||.||+ +||||++|+|+++|||+ ||+|++|+++|++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~l~d~~G~----~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~~~~ 88 (472)
T 3hmu_A 16 QALDAAHHLHPFSANNALGEEGTRVITRARGV--WLNDSEGE----EILDAMAGLWCVNIGYG-RDELAEVAARQMRELP 88 (472)
T ss_dssp HHHHHHHEECTTEEHHHHHHHCCEEEEEEEBT--EEEETTCC----EEECTTHHHHTCTTCBC-CHHHHHHHHHHHHHCS
T ss_pred HHHHHhhccCCcccccccccCCCeeEEEeecC--EEEECCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHHHhcc
Confidence 34556679999998654433468999998886 79999999 99999999999999999 9999999999999977
Q ss_pred c-ccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 434 H-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 434 ~-~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
+ .+...+.++...+|+++|++..|.+ .++|+|+|||+||||+|+|++ |.|++.+|. ++|.+||++
T Consensus 89 ~~~~~~~~~~~~~~~lae~l~~~~~~~-~~~v~~~~sGseA~~~aik~a-~~~~~~~g~------------~~~~~ii~~ 154 (472)
T 3hmu_A 89 YYNTFFKTTHVPAIALAQKLAELAPGD-LNHVFFAGGGSEANDTNIRMV-RTYWQNKGQ------------PEKTVIISR 154 (472)
T ss_dssp CCCSSSSEECHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred ccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEE
Confidence 3 3334567899999999999998754 689999999999999999999 777766554 567899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||.|.+++++++...|+.. +. + .++..+++.|++|++ ++. .+
T Consensus 155 ~~~yHg~t~~~~~~~~~~~~~~~------------~~-~----~~~~~~v~~p~~~~~----------~~~-------~~ 200 (472)
T 3hmu_A 155 KNAYHGSTVASSALGGMAGMHAQ------------SG-L----IPDVHHINQPNWWAE----------GGD-------MD 200 (472)
T ss_dssp TTCCCCSSHHHHHHSCCHHHHHT------------TC-C----CSSEEEECCCCHHHH----------CTT-------CC
T ss_pred cCcCCCccHHhhhccCChhhccc------------cC-C----CCCcEEeCCCccccC----------Ccc-------cC
Confidence 99999999999999986554432 11 1 134567777776642 110 12
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+.+...+.+.|++.+.+ .+++++++||+||+ |++||++++|++||++|+++|++||++||+|||||||||+|++
T Consensus 201 ~~~~~~~~~~~le~~i~~----~~~~~~aavi~epv-~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~ 275 (472)
T 3hmu_A 201 PEEFGLARARELEEAILE----LGENRVAAFIAEPV-QGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNW 275 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCcc
Confidence 234555667888888874 23468999999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhh
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
|+++++|+.|||+||||+||||++|+|++++++++++.+
T Consensus 276 ~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~ 314 (472)
T 3hmu_A 276 FGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVI 314 (472)
T ss_dssp CHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHH
T ss_pred chhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhc
Confidence 999999999999999999999989999999999999988
No 7
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=4.3e-48 Score=432.80 Aligned_cols=302 Identities=18% Similarity=0.303 Sum_probs=232.9
Q ss_pred ccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~ 431 (719)
.+.+++.+++||||+++..+....|.++++++|. |+||.||+ +||||++++|+++|||+ ||+|++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~ 81 (459)
T 4a6r_A 9 QWRELDAAHHLHPFTDTASLNQAGARVMTRGEGV--YLWDSEGN----KIIDGMAGLWCVNVGYG-RKDFAEAARRQMEE 81 (459)
T ss_dssp -------------------------CCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCccccccccccCCeeEEEeecC--EEEECCCC----EEEECCCchhcccCCCC-CHHHHHHHHHHHHh
Confidence 4667788899999999877665678899998886 79999999 99999999999999999 99999999999998
Q ss_pred ccc-ccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEE
Q 005009 432 FGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (719)
Q Consensus 432 ~~~-~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII 510 (719)
+.+ .....+.++...+|+++|++..|.+ .++|+|+|||+|||+.|+|++ +.+++.+|. +++.+||
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~ggseA~~~al~~~-~~~~~~~g~------------~~~~~vi 147 (459)
T 4a6r_A 82 LPFYNTFFKTTHPAVVELSSLLAEVTPAG-FDRVFYTNSGSESVDTMIRMV-RRYWDVQGK------------PEKKTLI 147 (459)
T ss_dssp CSCCCTTSSSCCHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEE
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCEEE
Confidence 763 3333567899999999999988754 689999999999999999999 677665553 5678999
Q ss_pred EEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcc
Q 005009 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (719)
Q Consensus 511 ~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~ 590 (719)
+++++|||.+.+++++++...|+.. +.+. ..+..+++.|.+|++ ++.
T Consensus 148 ~~~~~yhg~~~~~~~~~~~~~~~~~------------~~~~----~~~~~~~~~p~~~~~----------~~~------- 194 (459)
T 4a6r_A 148 GRWNGYHGSTIGGASLGGMKYMHEQ------------GDLP----IPGMAHIEQPWWYKH----------GKD------- 194 (459)
T ss_dssp EETTCCCCSSHHHHHHSCCTTTC---------------CCS----CSSEEEECCCCHHHH----------CTT-------
T ss_pred EECCCcCCccHHHHhhcCChhhccc------------cCCC----CCCCEEeCCCccccC----------Ccc-------
Confidence 9999999999999999987655542 1111 124567777876643 110
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC
Q 005009 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (719)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG 670 (719)
.|.+.+...+.+.|++.+.+ .+++++++||+||+ ++++|++++|++|+++|+++|++||++||+|||||||||+|
T Consensus 195 ~d~~~~~~~~~~~le~~i~~----~~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G 269 (459)
T 4a6r_A 195 MTPDEFGVVAARWLEEKILE----IGADKVAAFVGEPI-QGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG 269 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cCHHHHHHHHHHHHHHHHHH----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 12234455567888888874 23468999999997 99999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 671 ~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|+++++++.||++||||+||||++|+|++++++++++.+.
T Consensus 270 ~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~ 311 (459)
T 4a6r_A 270 EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLI 311 (459)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHH
T ss_pred ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhh
Confidence 999999999999999999999999889999999999999875
No 8
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=3.2e-48 Score=433.95 Aligned_cols=303 Identities=19% Similarity=0.284 Sum_probs=249.5
Q ss_pred ccchhhCCCccccCCCCCCCCCC--CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPEE--AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~~--~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~ 429 (719)
.+.+++.+++||||++++.+... .|.++++++|. |+||.||+ +||||++++|++++||+ ||+|++|+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~G~----~~lD~~~~~~~~~lG~~-~p~v~~A~~~~~ 80 (460)
T 3gju_A 8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGV--TVWDNNGR----KSIDAFAGLYCVNVGYG-RQKIADAIATQA 80 (460)
T ss_dssp CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHH
T ss_pred HHHHhhhcccccCccccccccccCCCceEEEEeecc--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHH
Confidence 34556677899999986543222 34889988776 79999999 99999999999999999 999999999999
Q ss_pred hhcccc-cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceE
Q 005009 430 ARFGHV-MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (719)
Q Consensus 430 ~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~k 508 (719)
+++.+. ....+.++...+|+++|++..+.+ .++|+|+|||+|||+.|+|++ +.+++.+|. ++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~gGseA~~~al~~~-~~~~~~~g~------------~~~~~ 146 (460)
T 3gju_A 81 KNLAYYHAYVGHGTEASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLI-WYYNNVLGR------------PEKKK 146 (460)
T ss_dssp HHHSCCCCCTTCCCHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCE
T ss_pred HhccccccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCE
Confidence 987642 333567888999999999987644 689999999999999999999 677665554 56789
Q ss_pred EEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhh
Q 005009 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (719)
Q Consensus 509 II~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (719)
||+++++|||.+.+++++++...++.. +.+. ..+..+++.|..|++ ++.
T Consensus 147 vi~~~~~yhg~~~~~~~~~~~~~~~~~------------~~~~----~~~~~~~~~p~~~~~----------~~~----- 195 (460)
T 3gju_A 147 IISRWRGYHGSGVMTGSLTGLDLFHNA------------FDLP----RAPVLHTEAPYYFRR----------TDR----- 195 (460)
T ss_dssp EEEETTCCCCSSHHHHHHCCCGGGTTT------------TTCS----CTTEEEECCCCGGGC----------SCT-----
T ss_pred EEEECCCcCCCCHHHhhccCCcccccc------------cCCC----CCCCEEeCCCccccC----------Ccc-----
Confidence 999999999999999999986655432 1111 134567777776653 220
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc
Q 005009 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (719)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR 668 (719)
+.+.+++...+.+.|++.+.+ .+++++++||+||+ ++++|+++++++|+++|+++|++||++||+|||||||||
T Consensus 196 -g~~~~~~~~~~~~~le~~i~~----~~~~~~aaii~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 269 (460)
T 3gju_A 196 -SMSEEQFSQHCADKLEEMILA----EGPETIAAFIGEPI-LGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269 (460)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred -ccChhHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 112234555667888888874 23468999999997 999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 669 tG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|++|+++++|+.||++||||+|||||+|+|++++++++++.+.
T Consensus 270 ~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~ 313 (460)
T 3gju_A 270 LGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLV 313 (460)
T ss_dssp TSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHH
T ss_pred ccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHh
Confidence 99999999999999999999999999889999999999999884
No 9
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=1.3e-46 Score=419.31 Aligned_cols=299 Identities=27% Similarity=0.386 Sum_probs=226.2
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.+++.+++||||++++.+ ...|+++++++|. |+||.||+ +|||+++++|++++||+ ||+|++|+++|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~--~v~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~ 76 (448)
T 3dod_A 5 LIEKSKKHLWLPFTQMKDY-DENPLIIESGTGI--KVKDINGK----EYYDGFSSVWLNVHGHR-KKELDDAIKKQLGKI 76 (448)
T ss_dssp HHHHHHHHBCCTTCCHHHH-HHSCCEEEEEEBT--EEEETTSC----EEEETTHHHHTCSSCBS-CHHHHHHHHHHHTTC
T ss_pred HHHhhhhcccccccccccc-cCCCceEEEeeeC--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhc
Confidence 4455667899999886554 2457889998776 79999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+.+...+.++...+|+++|++..|.+ .++|+|+|||+|||+.|+|++ +.+....|. ++|.+||++
T Consensus 77 ~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~al~~~-~~~~~~~G~------------~~~~~vi~~ 142 (448)
T 3dod_A 77 AHSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMA-FQYWKNIGK------------PEKQKFIAM 142 (448)
T ss_dssp SCCCCSSSEEHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred cCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhhCC------------CCCCEEEEE
Confidence 765444567889999999999988744 689999999999999999999 565322221 346799999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||.+.+++++++...++.. +.+ ...+..+++.|++|+++ . .+
T Consensus 143 ~~~yhg~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~-~-----------------~~ 188 (448)
T 3dod_A 143 KNGYHGDTIGAVSVGSIELFHHV--------YGP--------LMFESYKAPIPYVYRSE-S-----------------GD 188 (448)
T ss_dssp C---------------------------------------------CEEECCCCCTTSS-S-----------------CC
T ss_pred CCCCCCccHHHHHhcCCcccccc--------ccC--------CCCCceEeCCCccccCC-c-----------------cc
Confidence 99999999999999886544432 111 01234567777776542 0 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc-cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH-AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq-g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
...+...+.+.|++.|.+ +++++++||+||+ + +++|+++++++|+++|+++|++||++||+|||||||||+|+
T Consensus 189 ~~~~~~~d~~~le~~l~~-----~~~~~a~vi~ep~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~ 262 (448)
T 3dod_A 189 PDECRDQCLRELAQLLEE-----HHEEIAALSIESM-VQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK 262 (448)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HGGGEEEEEEESS-EESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred hhhhhHHHHHHHHHHHHh-----CCCCEEEEEEeCc-ccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc
Confidence 122333446788888862 3468999999998 8 99999999999999999999999999999999999999999
Q ss_pred cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 672 ~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+++++++.||++|+||++|+||+|+|++++++++++.+..
T Consensus 263 ~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 263 MFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYD 304 (448)
T ss_dssp SSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCS
T ss_pred hhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhh
Confidence 999999999999999999999997799999999999998864
No 10
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=2e-46 Score=420.47 Aligned_cols=290 Identities=30% Similarity=0.461 Sum_probs=234.1
Q ss_pred cchhhCCCccccCCCC-CCCCCCCeEEEEeecCCceEEEeC-CCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhh
Q 005009 353 MPKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAA 430 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~-~~~~~~~p~vi~~~~G~g~~l~D~-dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~ 430 (719)
+.+++.+++|+||+++ +. ...|.++++++|. |+||. ||| ..+||||+|++|++++||+ ||+|++|+++|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~--~l~d~~dG~--~~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~ 105 (457)
T 3tfu_A 33 IIAVDGAHLWHPYSSIGRE--AVSPVVAVAAHGA--WLTLIRDGQ--PIEVLDAMSSWWTAIHGHG-HPALDQALTTQLR 105 (457)
T ss_dssp HHHHHHHHBCCTTCCSSCC--SSCCEEEEEEEBT--EEEEEETTE--EEEEEETTHHHHTCTTCBT-CHHHHHHHHHHHH
T ss_pred HHHHHHhhcCccccccccc--CCCCceEEeeecC--EEEEccCCC--eeEEEECCCcHhhhccCCC-CHHHHHHHHHHHH
Confidence 3345567799999986 32 3568899998886 79999 995 1279999999999999999 9999999999999
Q ss_pred hcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEE
Q 005009 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (719)
Q Consensus 431 ~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII 510 (719)
++.+.++..+.++...+|+++|++..|.+ .++|+|+|||+||||.|+|++ +.|+..+|. ++|.+||
T Consensus 106 ~~~~~~~~~~~~~~~~~L~e~la~~~~~~-~~~v~~~~sGseA~~~Alk~a-~~~~~~~g~------------~g~~~ii 171 (457)
T 3tfu_A 106 VMNHVMFGGLTHEPAARLAKLLVDITPAG-LDTVFFSDSGSVSVEVAAKMA-LQYWRGRGL------------PGKRRLM 171 (457)
T ss_dssp HCSCCCSSSEECHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEE
T ss_pred hccCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCceEE
Confidence 98876655567899999999999998744 689999999999999999999 666444433 5577999
Q ss_pred EEeCCcccCccccccccC-CCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhc
Q 005009 511 ALKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589 (719)
Q Consensus 511 ~~~~syHG~t~galslt~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~ 589 (719)
+++++|||.|.+++++++ ...|+.. + .+ ...+...++.|..- +.
T Consensus 172 ~~~~~yhg~~~~~~~~~~~~~~~~~~----~----~~--------~~~~~~~~~~p~~~-----------~~-------- 216 (457)
T 3tfu_A 172 TWRGGYHGDTFLAMSICDPHGGMHSL----W----TD--------VLAAQVFAPQVPRD-----------YD-------- 216 (457)
T ss_dssp EETTCCCCSSHHHHTTSCCC--------------------------CCCCEEECCCCSS-----------CC--------
T ss_pred EEcCCcCCccHHhhcccCCccccccc----c----cC--------CCCCceEecCCCcc-----------cC--------
Confidence 999999999999999965 2223221 0 00 01123344444210 00
Q ss_pred ccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc-ccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc
Q 005009 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP-VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (719)
Q Consensus 590 ~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP-Viqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR 668 (719)
....+.|++.|++ .++++++||+|| + |+++|+++++++|+++|+++|++||++||+|||||||||
T Consensus 217 --------~~d~~~le~~l~~-----~~~~~aavi~ep~~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr 282 (457)
T 3tfu_A 217 --------PAYSAAFEAQLAQ-----HAGELAAVVVEPVV-QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGR 282 (457)
T ss_dssp --------HHHHHHHHHHHHH-----HGGGEEEEEECSSE-ECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred --------HHHHHHHHHHHHh-----CCCCEEEEEEeCCC-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCcc
Confidence 0124677888863 246899999999 6 999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 669 tG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|++|+++++|+.||++||||+|||||+|+|++++++++++.+.
T Consensus 283 ~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~ 326 (457)
T 3tfu_A 283 TGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTIS 326 (457)
T ss_dssp TSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHH
T ss_pred ccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhh
Confidence 99999999999999999999999999889999999999999884
No 11
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=5.5e-45 Score=405.90 Aligned_cols=295 Identities=23% Similarity=0.318 Sum_probs=240.0
Q ss_pred ccchhhCCCccc---cCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHh
Q 005009 352 DMPKRAGELFWW---PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (719)
Q Consensus 352 ~L~e~~~~~~~~---p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q 428 (719)
.+.+++.+++|+ ||++ ..|.++++++|. |+||.||+ +||||++++|++++||+ ||+|++|+++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~------~~p~~~~~~~G~--~v~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~A~~~~ 77 (452)
T 3n5m_A 11 ELLAKDEQYVWHGMRPFSP------NSTTVGAKAEGC--WVEDIQGK----RYLDGMSGLWCVNSGYG-RKELAEAAYKQ 77 (452)
T ss_dssp HHHHHHHHHBCCTTSCSCG------GGCCEEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHH
T ss_pred HHHHHhhhhcccccccccc------CCCceEEEeeeC--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHH
Confidence 455566777888 4432 467899998886 79999999 99999999999999999 99999999999
Q ss_pred hhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceE
Q 005009 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (719)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~k 508 (719)
++++.+ ....+.++...+|+++|++..+.+ .+ |+|++||+|||+.|+|++ +.|+...|. +++.+
T Consensus 78 ~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~-~~-v~~~~ggseA~~~al~~~-~~~~~~~g~------------~~~~~ 141 (452)
T 3n5m_A 78 LQTLSY-FPMSQSHEPAIKLAEKLNEWLGGE-YV-IFFSNSGSEANETAFKIA-RQYYAQKGE------------PHRYK 141 (452)
T ss_dssp HTTCCC-CCTTSEEHHHHHHHHHHHHHHTSC-EE-EEEESSHHHHHHHHHHHH-HHHHHTTTC------------TTCCE
T ss_pred HHhcCC-cccccCCHHHHHHHHHHHHhCCCC-ce-EEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCE
Confidence 999877 334567889999999999988754 45 999999999999999999 566433322 35679
Q ss_pred EEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhh
Q 005009 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (719)
Q Consensus 509 II~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (719)
||+++++|||.+.+++++++...++.. +.+ ..++..+++.|++++++ +||..
T Consensus 142 vi~~~~~yhg~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~--------~~~~~---- 193 (452)
T 3n5m_A 142 FMSRYRGYHGNTMATMAATGQAQRRYQ--------YEP--------FASGFLHVTPPDCYRMP--------GIERE---- 193 (452)
T ss_dssp EEEETTCCCCSSHHHHHSCCCGGGTTT--------TCC--------CCSCEEEECCCCTTTST--------TTTTS----
T ss_pred EEEECCCcCCCCHHHHhcCCchhhccc--------cCC--------CCCCCeEeCCCccccCc--------cCCch----
Confidence 999999999999999999886554432 000 11245567777776542 44421
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc
Q 005009 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (719)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR 668 (719)
+.+...+.+.|++.+.+ .+++++++||+||++|+ +|+++++++|+++|+++|++||++||+|||||||||
T Consensus 194 -----~~~~~~~~~~le~~l~~----~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 194 -----NIYDVECVKEVDRVMTW----ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp -----CGGGCHHHHHHHHHHHH----HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred -----hhHHHHHHHHHHHHHHh----cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 12233456788888863 23468999999996479 999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 669 tG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|++|+++++++.||++|+||++|+||+|+|++++++++++.+..
T Consensus 264 ~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~ 308 (452)
T 3n5m_A 264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKG 308 (452)
T ss_dssp TSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCS
T ss_pred ccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhh
Confidence 999999999999999999999999998899999999999999854
No 12
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=1e-44 Score=405.16 Aligned_cols=276 Identities=22% Similarity=0.248 Sum_probs=225.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||+ +||||+++++++++||+ ||+|++|+++|++++.+.....+.++...+|+++|++
T Consensus 43 ~p~~~~~g~G~--~v~d~~g~----~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 115 (451)
T 3oks_A 43 MPVYAVRAGGG--IVEDVDGN----RLIDLGSGIAVTTVGNS-APKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNR 115 (451)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCceEEEeecC--EEEECCCC----EEEEcCCCccccccCCC-CHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHH
Confidence 46788888776 79999999 99999999999999999 9999999999999987765455778999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~ 533 (719)
..|....++|+|+|||+|||++|+|+| +.++++ .+||+++++|||.|.+++++++.. .|+
T Consensus 116 ~~~~~~~~~v~~~~sGseA~~~Alk~a-~~~~g~------------------~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 176 (451)
T 3oks_A 116 LTPVRGDKRSALFNSGSEAVENAVKIA-RSHTHK------------------PAVVAFDHAYHGRTNLTMALTAKVMPYK 176 (451)
T ss_dssp HSSCCSSEEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCcCCCCEEEEeCcHHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCcCCccHHHHHhcCCCcccc
Confidence 887433579999999999999999999 666543 589999999999999999998753 333
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +.+ ...+..++++|++|+.+. . +.+.+.+...+.+.+++.|++.
T Consensus 177 ~~--------~~~--------~~~~~~~~~~~~~~~~~~--------~--------g~~~~~~~~~~~~~~~~~l~~~-- 222 (451)
T 3oks_A 177 DG--------FGP--------FAPEIYRAPLSYPFRDAE--------F--------GKELATDGELAAKRAITVIDKQ-- 222 (451)
T ss_dssp TT--------CCS--------CCSSEEEECCCCHHHHGG--------G--------CTTTTTCHHHHHHHHHHHHHHH--
T ss_pred cC--------CCC--------CCCCcEEeCCCccccccc--------c--------ccccchhhHHHHHHHHHHHHhh--
Confidence 32 111 123456777776664310 0 0011122233345555555531
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..++++++||+||+ +++||++.++++|+++|+++|++||++||+||||+||||+|++|+++++++.||++||||++++
T Consensus 223 -~~~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~ 300 (451)
T 3oks_A 223 -IGADNLAAVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAG 300 (451)
T ss_dssp -TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred -cCCCCEEEEEEcCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhC
Confidence 23568999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 301 G-~~iG~v~~~~~~~~~~~~ 319 (451)
T 3oks_A 301 G-LPLSAVTGRAEIMDSPHV 319 (451)
T ss_dssp T-SSCEEEEEEHHHHTCSCT
T ss_pred C-cceEEEEECHHHHhhhcC
Confidence 9 799999999999998753
No 13
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=2.1e-44 Score=403.03 Aligned_cols=271 Identities=27% Similarity=0.310 Sum_probs=222.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||+ +||||+++++++++||+ ||+|++|+++|++++.+.....+.++...+|+++|++
T Consensus 46 ~p~~~~~~~G~--~v~d~~G~----~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 118 (453)
T 4ffc_A 46 APVYAVDADGG--VIVDADGN----SFIDLGAGIAVTTVGAS-HPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNA 118 (453)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEeCCCC----EEEEcCCCcccCcCCCC-CHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHH
Confidence 46788888776 79999999 99999999999999999 9999999999999987765455678999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~ 533 (719)
..|....++|+|+|||+|||++|||+| |.++++ .+||+++++|||++.+++++++.. .|+
T Consensus 119 ~~~~~~~~~v~~~~sGseA~~~alk~a-~~~~g~------------------~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 179 (453)
T 4ffc_A 119 LTPGDHDKRTALFNSGAEAVENAIKVA-RLATGR------------------PAVVAFDNAYHGRTNLTMALTAKSMPYK 179 (453)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCCCCCcEEEEeCcHHHHHHHHHHHH-HHhcCC------------------CEEEEEcCccCCcchHHHhhcCCCcccc
Confidence 887433579999999999999999999 666543 589999999999999999998753 333
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +.+ ..++..++++|.+|+.+ . +.+.++....+.+.+++.+.
T Consensus 180 ~~--------~~~--------~~~~~~~~~~~~~~~~~------------~-----g~~~~~~~~~~~~~l~~~i~---- 222 (453)
T 4ffc_A 180 SQ--------FGP--------FAPEVYRMPASYPLRDE------------P-----GLTGEEAARRAISRIETQIG---- 222 (453)
T ss_dssp TT--------SCS--------CCSSEEEECCCCTTTSC------------T-----TCCHHHHHHHHHHHHHHHTC----
T ss_pred cC--------CCC--------CCCCcEEeCCCccccCc------------c-----ccchHHHHHHHHHHHHHhcC----
Confidence 21 111 11345566777554321 0 01111222333455555442
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
++++++||+||+ +++||+++++++|+++|+++|++||++||+|||||||||+|++|+++++|+.||++||||++++
T Consensus 223 ---~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~ 298 (453)
T 4ffc_A 223 ---AQSLAAIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAG 298 (453)
T ss_dssp ---GGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGT
T ss_pred ---CCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcC
Confidence 468999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 299 G-~~~G~~~~~~~i~~~~~~ 317 (453)
T 4ffc_A 299 G-MPLSAVTGRAELMDAVYA 317 (453)
T ss_dssp T-SSCEEEEEEHHHHTTSCT
T ss_pred C-cCeEEEEECHHHHhhhcc
Confidence 9 799999999999998763
No 14
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=1.7e-43 Score=398.02 Aligned_cols=285 Identities=18% Similarity=0.159 Sum_probs=228.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccchhhCCCccccCCCC-CCCCCCCeEEEEeecCCceEEEeCCCCcccceeeecccccc
Q 005009 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWW 409 (719)
Q Consensus 331 ~v~~Ll~~l~~~~~~r~~rl~~L~e~~~~~~~~p~~~~-~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~ 409 (719)
.+..++..+..+|.++..+.+++.+++.+++....... ..+ ...|+++++++|. |+||.||| +||||+++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~~g~~~~~~~~-~~~p~~~~~~~G~--~l~D~dG~----~yiD~~~~~~ 110 (465)
T 2yky_A 38 EKAQAIAAARNTFARDNPVSAGHHERARRSMPGGNTRSILFH-RPFPLVIAQGTGS--RFQDVDGH----AYVNFLGEYT 110 (465)
Confidence 35555666677787778888888888877664311111 111 1247888887775 79999999 9999999999
Q ss_pred ccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccc
Q 005009 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (719)
Q Consensus 410 ~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~ 489 (719)
++++||+ ||+|++|+++|+++... ..+.++...+|+++|+++.| + .++|+|+|||+||||+|||+| |.++++
T Consensus 111 ~~~lGh~-~p~V~~Av~~q~~~~~~---~~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~a-r~~tgr- 182 (465)
T 2yky_A 111 AGLFGHS-HPVIRAAVERALAVGLN---LSTQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATA-TAITGR- 182 (465)
Confidence 9999999 99999999999998432 24578899999999999986 3 689999999999999999999 766543
Q ss_pred cccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhh
Q 005009 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (719)
Q Consensus 490 G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (719)
.+||+++++|||++.+++ ++ + ... + + |. ..+.+
T Consensus 183 -----------------~~ii~~~~~yHG~~~~~~--sg-~-~~~--------g----~--~~-------~~~~~----- 215 (465)
T 2yky_A 183 -----------------KTVLAFDGGYHGGLLNFA--SG-H-APT--------N----A--PY-------HVVLG----- 215 (465)
Confidence 589999999999999888 43 1 000 0 0 00 01111
Q ss_pred hcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHH
Q 005009 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (719)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~L 649 (719)
+|||. +.|++.+++ .++++++||+||+ ++++|+++++++|+++|+++
T Consensus 216 ---------~~~d~------------------~~l~~~l~~-----~~~~~aavi~epv-~~~~G~~~~~~~~l~~l~~l 262 (465)
T 2yky_A 216 ---------VYNDV------------------EGTADLLKR-----HGHDCAAILVEPM-LGAGGCVPAERAFLDLLRAE 262 (465)
Confidence 24442 456666653 2468999999998 99999999999999999999
Q ss_pred HHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 650 c~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|++||++||+||||| | |+|++|+++++|+.|||+||||++||| +|+|++++++++++.+..
T Consensus 263 ~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~ 323 (465)
T 2yky_A 263 ASRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDP 323 (465)
Confidence 999999999999999 6 999999999999999999999999999 799999999999998764
No 15
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=2.1e-40 Score=365.90 Aligned_cols=282 Identities=24% Similarity=0.271 Sum_probs=213.5
Q ss_pred CCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC
Q 005009 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (719)
Q Consensus 359 ~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~ 438 (719)
+++||||. ..|.++++++|. |+||.||+ +|||++++++++++||+ ||+|++|+++|++++.+.+..
T Consensus 2 ~~~~~~~~-------~~~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~ 67 (430)
T 3i4j_A 2 SNVFYRSS-------KPYPVAVRGEGV--FLYDDAGR----RYLDGSSGALVANIGHG-RAEVGERMAAQAARLPFVHGS 67 (430)
T ss_dssp -CBCCSSS-------SCCCEEEEEEBT--EEEETTSC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCCCCCTT
T ss_pred CccccCCC-------CCCceEEeeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhccccccc
Confidence 46899982 347788888776 79999999 99999999999999999 999999999999987765544
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|++..+.+ .++|+|+|||+||++.|+|++ +.+...+|. +++.+||+++.+|||
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~al~~~-~~~~~~~g~------------~~~~~vi~~~~~yhg 133 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLP-TFRFWAVSGGSEATESAVKLA-RQYHVERGE------------PGRFKVITRVPSYHG 133 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCT-TCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEETTC---
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEeCCcCC
Confidence 566788999999999988744 579999999999999999999 555444432 456799999999999
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.+.+++++++...++.. +.+. . | ..+...++.|+.|++ ..
T Consensus 134 ~~~~~~~~~~~~~~~~~--------~~~~-~-~----~~~~~~~~~~~~~~~--------------------------~~ 173 (430)
T 3i4j_A 134 ASLGSLAASGMGARREL--------YTPL-M-R----PEAWPKLPKPDPARN--------------------------GA 173 (430)
T ss_dssp --------------------------------C----GGGSCEECCCCTTSC--------------------------HH
T ss_pred CCcccccccCccccccc--------cCCc-C-C----CCCceEcCCCcccch--------------------------hh
Confidence 99999998875443321 0000 0 0 002344555544321 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc-CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg-~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
...+.|++.+++ .+++++++||+||+ +| ++|+++++++|+++|+++|++||++||+||||+||||+|+++++++
T Consensus 174 ~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~ 248 (430)
T 3i4j_A 174 EDAEGLRALLER----EGPETVAAFMAEPV-VGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSR 248 (430)
T ss_dssp HHHTHHHHHHHH----HCGGGEEEEEECSS-CCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred HHHHHHHHHHHh----cCCCCEEEEEEcCc-ccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhh
Confidence 224667777764 22368999999998 99 9999999999999999999999999999999999999999999999
Q ss_pred c-CCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 678 L-GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 678 ~-gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+ ++.||++||||++|+||+|+|++++++++++.+..
T Consensus 249 ~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~ 285 (430)
T 3i4j_A 249 WSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMG 285 (430)
T ss_dssp TTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHH
T ss_pred hcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhc
Confidence 9 99999999999999998899999999999998864
No 16
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=4.1e-40 Score=365.95 Aligned_cols=302 Identities=19% Similarity=0.292 Sum_probs=237.2
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
..+++.+++|+||++++.+. ..|.++.+++|. ++||.+|+ +|||+.+++|++++||+ ||+|++|+.+|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~ 82 (449)
T 3a8u_X 11 ASQLKLDAHWMPYTANRNFL-RDPRLIVAAEGS--WLVDDKGR----KVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTL 82 (449)
T ss_dssp GGGSCGGGSCCTTSCHHHHH-HSCCCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTC
T ss_pred HHhhhhcccccccccccccc-CCCceEEeeecC--EEEECCCC----EEEECCccHhhccCCCC-CHHHHHHHHHHHHhC
Confidence 44566788999999864432 257788887776 79999999 99999999999999999 999999999999886
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
....+..+.++...+++++|++.++.+ .++++|++||+||++.|++++ +.|+..+|. +++.+||++
T Consensus 83 ~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggsea~~~al~~~-~~~~~~~g~------------~~~~~vi~~ 148 (449)
T 3a8u_X 83 DYSPGFQYGHPLSFQLAEKITDLTPGN-LNHVFFTDSGSECALTAVKMV-RAYWRLKGQ------------ATKTKMIGR 148 (449)
T ss_dssp SCCCSSSCCCHHHHHHHHHHHTTSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEE
Confidence 522221466888999999999988643 579999999999999999999 666654433 456789999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+.+|||.+.+++++++...++.. +++. ..+...++.|..|++. |.. .|
T Consensus 149 ~~~yhg~~~~~~~~~g~~~~~~~--------~~~~--------~~~~~~v~~~~~~~~~--------~~~--------~d 196 (449)
T 3a8u_X 149 ARGYHGVNIAGTSLGGVNGNRKL--------FGQP--------MQDVDHLPHTLLASNA--------YSR--------GM 196 (449)
T ss_dssp TTCCCCSSHHHHHHCCCHHHHTT--------TCCC--------SCSEEEECCCCCGGGT--------TCS--------SS
T ss_pred CCCcCCCChhhhhccCChhhccc--------cCCC--------CCCCeEecCCccccCc--------ccc--------CC
Confidence 99999999988888864433221 1110 1233455555444210 000 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+++...+.+.|++.+.+ .+++++++||+||+ ++.+|++.+|++|+++|+++|++||++||+|||||||||+|++
T Consensus 197 ~~~~~~~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 271 (449)
T 3a8u_X 197 PKEGGIALADELLKLIEL----HDASNIAAVFVEPL-AGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM 271 (449)
T ss_dssp CSSSHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc
Confidence 112233446778888863 12358999999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++++++.||++|+||++++||+|+|++++++++++.+..
T Consensus 272 ~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~ 312 (449)
T 3a8u_X 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMN 312 (449)
T ss_dssp SHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHT
T ss_pred hhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhc
Confidence 99999999999999999999998899999999999998865
No 17
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=3e-39 Score=359.10 Aligned_cols=258 Identities=21% Similarity=0.280 Sum_probs=196.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +|||+.+|+++.++||+ ||+|++|+++|++++.+.+. .+.++...+|+++|++
T Consensus 47 ~~~~~~~~~g~--~~~d~~G~----~ylD~~~g~~~~~lgh~-~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 118 (433)
T 1z7d_A 47 IPVVLKRAKGV--FVYDVNDK----RYYDFLSAYSSVNQGHC-HPNILNAMINQAKNLTICSR-AFFSVPLGICERYLTN 118 (433)
T ss_dssp EEEEEEEEEBT--EEEETTCC----EEEESSHHHHTTTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEEHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEECCCC----EEEEcccchhhcccCCC-CHHHHHHHHHHHHhCCCccC-CcCCHHHHHHHHHHHh
Confidence 47788888776 79999999 99999999999999999 99999999999998765432 3567889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh-ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~-~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
..+ .++++|+|||+||++.|+|++ +.|+ ..+|. .++|.+||+++++|||.+.+++++++...++
T Consensus 119 ~~g---~~~v~~~~sGseA~~~al~~a-~~~~~~~~g~-----------~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~ 183 (433)
T 1z7d_A 119 LLG---YDKVLMMNTGAEANETAYKLC-RKWGYEVKKI-----------PENMAKIVVCKNNFSGRTLGCISASTTKKCT 183 (433)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTSCC-----------CTTCCEEEEETTC------------------
T ss_pred hcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccCC-----------CCCCCeEEEEeCCcCCcchhhhcccCCcccc
Confidence 886 479999999999999999999 5542 11111 1345799999999999999998887643332
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +++.. .+...+ +++| .+.+++.++
T Consensus 184 ~~--------~~p~~--------~~v~~~----------------~~~d------------------~~~le~~l~---- 209 (433)
T 1z7d_A 184 SN--------FGPFA--------PQFSKV----------------PYDD------------------LEALEEELK---- 209 (433)
T ss_dssp ------------------------CEEEE----------------CTTC------------------HHHHHHHHT----
T ss_pred cc--------CCCCC--------CCeEEe----------------CCCC------------------HHHHHHHhC----
Confidence 21 11100 011111 1333 256777774
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.+++++||+||+ ++++|++++|++|+++|+++|++||++||+||||+||||+|++|+++++|+.||++|+||++|+
T Consensus 210 ---~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~ 285 (433)
T 1z7d_A 210 ---DPNVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSG 285 (433)
T ss_dssp ---STTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ---CCCEEEEEEECC-CCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccC
Confidence 246899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
||+|+|++++++++++.+..
T Consensus 286 G~~~~G~v~~~~~~~~~l~~ 305 (433)
T 1z7d_A 286 GHYPISAVLANDDIMLVIKP 305 (433)
T ss_dssp TSSCCEEEEECHHHHTTCCT
T ss_pred CCCCeEEEEECHHHHhhhcc
Confidence 98899999999999988764
No 18
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=4.8e-39 Score=355.31 Aligned_cols=258 Identities=22% Similarity=0.290 Sum_probs=200.0
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|+++++++|. |+||.||+ +||||+++++++++||+ ||+|++|+++|+++..+. .+.++...+|+++|+
T Consensus 34 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~---~~~~~~~~~la~~l~ 103 (429)
T 4e77_A 34 GIPLFIERADGA--YLFDVDGK----AYIDYVGSWGPMILGHN-HPAIRQAVIEAVERGLSF---GAPTEMEVKMAQLVT 103 (429)
T ss_dssp SCCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhCccc---CCCCHHHHHHHHHHH
Confidence 357788888776 79999999 99999999999999999 999999999999986542 356889999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. .++++|+|||+|||+.|+|+| |.++++ .+||+++++|||.+..++..++.....
T Consensus 104 ~~~~~--~~~v~~~~sGsea~~~al~~a-~~~~~~------------------~~ii~~~~~yhg~~~~~~~~~~~~~~~ 162 (429)
T 4e77_A 104 DLVPT--MDMVRMVNSGTEATMSAIRLA-RGYTGR------------------DKIIKFEGCYHGHADCLLVKAGSGALT 162 (429)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCC---------------
T ss_pred hhCCC--CCEEEEeCcHHHHHHHHHHHH-HHhhCC------------------CEEEEEcCccCCCChhhhhhcCCcccc
Confidence 98873 689999999999999999999 666543 589999999999999877666532211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .+...+ .+. ...++.+ .++++| .+.+++.+++
T Consensus 163 ~~--~~~~~~------~~~---------~~~~~~~--------~~~~~d------------------~~~le~~l~~--- 196 (429)
T 4e77_A 163 LG--QPNSPG------VPT---------DFAKHTL--------TCTYND------------------LASVRQAFEQ--- 196 (429)
T ss_dssp -----CCCTT------SCG---------GGGTTEE--------EECTTC------------------HHHHHHHHHH---
T ss_pred cC--CCCcCC------CCC---------ccCCcee--------ecCCCC------------------HHHHHHHHHh---
Confidence 10 000000 000 0000000 012333 2567777764
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++++||+||+ ++++|++.++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++|+||++|+
T Consensus 197 --~~~~~~~vi~ep~-~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~ 272 (429)
T 4e77_A 197 --YPQEVACIIVEPV-AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGG 272 (429)
T ss_dssp --STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGT
T ss_pred --cCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccC
Confidence 3467999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 273 G-~~~G~~~~~~~~~~~l~~ 291 (429)
T 4e77_A 273 G-MPVGAFGGRREVMNALAP 291 (429)
T ss_dssp T-SCCEEEEECHHHHTTBTT
T ss_pred C-CCeEEEEECHHHHHHhcc
Confidence 9 799999999999998864
No 19
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=4.7e-39 Score=355.61 Aligned_cols=258 Identities=21% Similarity=0.314 Sum_probs=206.4
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++++++|. |+||.||+ +|||+++++|++++||+ ||+|++|+++|+++... ..+.++...+|+++|+
T Consensus 36 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la 105 (434)
T 3l44_A 36 GAPIAMERGKGA--YFWDVDGN----KYIDYLAAYGPIITGHA-HPHITKAITTAAENGVL---YGTPTALEVKFAKMLK 105 (434)
T ss_dssp SCCCCEEEEEBT--EEEETTCC----EEEECCGGGTTCSSCBT-CHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhCcC---CCCCCHHHHHHHHHHH
Confidence 357788888776 79999999 99999999999999999 99999999999988532 2456889999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. .++++|+|||+||++.|+|++ +.+++ +.+||+++++|||.+.+++++++.....
T Consensus 106 ~~~~~--~~~v~~~~sGsea~~~ai~~a-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 164 (434)
T 3l44_A 106 EAMPA--LDKVRFVNSGTEAVMTTIRVA-RAYTG------------------RTKIMKFAGCYHGHSDLVLVAAGSGPST 164 (434)
T ss_dssp HHCTT--CSEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEETTCCCCSSGGGGBC-------
T ss_pred HhCCC--CCEEEEeCchHHHHHHHHHHH-HHhhC------------------CCEEEEEcCccCCCcHHHHhhcCCcccc
Confidence 98863 689999999999999999999 66643 3589999999999999999888643211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .+...+ .|.. ..+..+ .++++| .+.+++.+++
T Consensus 165 ~~--~~~~~~------~~~~---------~~~~~~--------~~~~~d------------------~~~le~~l~~--- 198 (434)
T 3l44_A 165 LG--TPDSAG------VPQS---------IAQEVI--------TVPFNN------------------VETLKEALDK--- 198 (434)
T ss_dssp CC--CBSSTT------CCHH---------HHTTEE--------EECTTC------------------HHHHHHHHHH---
T ss_pred cC--CCCcCC------CCCc---------CCCceE--------ecCccc------------------HHHHHHHHHh---
Confidence 10 000000 0000 000000 012333 2567777763
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++++||+||+ ++++|++.++++|+++|+++|++||++||+||||+|| |+|++++++++++.||++|+||++|+
T Consensus 199 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 274 (434)
T 3l44_A 199 --WGHEVAAILVEPI-VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGG 274 (434)
T ss_dssp --HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGT
T ss_pred --CCCCEEEEEEcCC-CCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcC
Confidence 2468999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 275 G-~~iG~~~~~~~i~~~~~~ 293 (434)
T 3l44_A 275 G-LPIGAYGGKKEIMEQVAP 293 (434)
T ss_dssp T-SSCEEEEECHHHHTTBTT
T ss_pred C-cCeeeEEEcHHHHHhhcc
Confidence 9 799999999999998754
No 20
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=4.3e-39 Score=356.02 Aligned_cols=258 Identities=22% Similarity=0.309 Sum_probs=208.9
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|+++++++|. |+||.||+ +||||++++|+++|||+ ||+|++|+++|+++..+. .+.++...+|+++|+
T Consensus 34 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~---~~~~~~~~~l~~~la 103 (429)
T 3k28_A 34 MNPLFMERGKGS--KVYDIDGN----EYIDYVLSWGPLIHGHA-NDRVVEALKAVAERGTSF---GAPTEIENKLAKLVI 103 (429)
T ss_dssp CCCCCEEEEEBT--EEEETTCC----EEEESCGGGTTCTTCBS-CHHHHHHHHHHHHHCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCChhhcccCCC-CHHHHHHHHHHHhhCcCc---CCCCHHHHHHHHHHH
Confidence 457888888776 79999999 99999999999999999 999999999999986542 356889999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. .++++|+|||+|||+.|+|++ +.+++ +.+||.++++|||.+.+++.+++.....
T Consensus 104 ~~~~~--~~~v~~~~~Gsea~~~ai~~a-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 162 (429)
T 3k28_A 104 ERVPS--IEIVRMVNSGTEATMSALRLA-RGYTG------------------RNKILKFIGCYHGHGDSLLIKAGSGVAT 162 (429)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHT------------------CCEEEEEETCCCCSCGGGCSSCCTTC--
T ss_pred HhCCC--CCEEEEeCChHHHHHHHHHHH-HHhhC------------------CCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 98863 689999999999999999999 66654 3589999999999999998887643211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .|.. ++ +|....... ..++|+| .+.+++.+.+
T Consensus 163 ~~--------------~~~~---~~-----~~~~~~~~~---~~~~~~d------------------~~~le~~l~~--- 196 (429)
T 3k28_A 163 LG--------------LPDS---PG-----VPEGVAKNT---ITVAYND------------------LESVKYAFEQ--- 196 (429)
T ss_dssp -----------------CCC---TT-----CCHHHHTTE---EEEETTC------------------HHHHHHHHHH---
T ss_pred cC--------------CCCc---CC-----CCCcccCce---eecCCCC------------------HHHHHHHHHh---
Confidence 10 0000 00 000000000 0012343 2567777763
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++++||+||+ ++++|++.++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++|+||++|+
T Consensus 197 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 272 (429)
T 3k28_A 197 --FGDDIACVIVEPV-AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGG 272 (429)
T ss_dssp --HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGT
T ss_pred --CCCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcC
Confidence 2468999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 273 G-~~iG~~~~~~~~~~~~~~ 291 (429)
T 3k28_A 273 G-LPVGAYGGKAEIMRQVAP 291 (429)
T ss_dssp T-SCCEEEEECHHHHTTBTT
T ss_pred C-CCeEEEEEcHHHHhhhcc
Confidence 9 799999999999998754
No 21
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=5.6e-39 Score=357.73 Aligned_cols=258 Identities=19% Similarity=0.270 Sum_probs=210.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +||||.+|+++.++||+ ||+|++|+++|++++.+.+. .+.++...+|+++|++
T Consensus 58 ~~~~~~~~~G~--~~~d~~g~----~ylD~~sg~~~~~lgh~-~p~v~~Ai~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 129 (439)
T 2oat_A 58 LPVALERGKGI--YLWDVEGR----KYFDFLSSYSAVNQGHC-HPKIVNALKSQVDKLTLTSR-AFYNNVLGEYEEYITK 129 (439)
T ss_dssp CSCEEEEEEBT--EEEETTCC----EEEESSGGGGTTTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEESSHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEECCCC----EEEEccCCcccccCCCC-CHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHH
Confidence 36678887775 89999999 99999999999999999 99999999999998765432 3456788999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh-ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~-~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+.+ .++++|++||+||++.|+|++ +.|+ .++|. .++|.+||+++++|||.+.+++++++...++
T Consensus 130 ~~g---~~~v~~~~sGseA~~~al~~~-~~~~~~~~g~-----------~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 194 (439)
T 2oat_A 130 LFN---YHKVLPMNTGVEAGETACKLA-RKWGYTVKGI-----------QKYKAKIVFAAGNFWGRTLSAISSSTDPTSY 194 (439)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTTCC-----------CTTCCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred hcC---CCEEEEeCCHHHHHHHHHHHH-HHHhhhccCC-----------CCCCCeEEEEcCCCCCCCHhHhhcCCChhcc
Confidence 886 479999999999999999999 5543 12211 1345789999999999999988887643222
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +++.. .+...++ ++| .+.+++.++
T Consensus 195 ~~--------~~p~~--------~~v~~~~----------------~~d------------------~~~le~~l~---- 220 (439)
T 2oat_A 195 DG--------FGPFM--------PGFDIIP----------------YND------------------LPALERALQ---- 220 (439)
T ss_dssp TT--------SCSCC--------TTEEEEC----------------SSC------------------HHHHHHHTT----
T ss_pred cC--------CCCCC--------CCeEEeC----------------CCC------------------HHHHHHHhC----
Confidence 11 11110 0111111 333 256777764
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.+++++||+||+ ++++|++.++++|+++|+++|++||++||+||||+||||+|++|+++++|+.||++|+||++||
T Consensus 221 ---~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~ 296 (439)
T 2oat_A 221 ---DPNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSG 296 (439)
T ss_dssp ---STTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ---CCCEEEEEEECC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccC
Confidence 246899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
||+|+|++++++++++.+..
T Consensus 297 G~~~~G~v~~~~~~~~~l~~ 316 (439)
T 2oat_A 297 GLYPVSAVLCDDDIMLTIKP 316 (439)
T ss_dssp TSSCCEEEEECHHHHTTSCT
T ss_pred CCCCeEEEEECHHHHhccCC
Confidence 97899999999999988764
No 22
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=5.5e-38 Score=346.32 Aligned_cols=258 Identities=19% Similarity=0.248 Sum_probs=210.2
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|+++++++|. |+||.||+ +||||.+++|++++||+ ||+|++|+++|+++..+. .+.++...+|+++|+
T Consensus 33 ~~p~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~ 102 (427)
T 3fq8_A 33 GQPIVFDRVKDA--YAWDVDGN----RYIDYVGTWGPAICGHA-HPEVIEALKVAMEKGTSF---GAPCALENVLAEMVN 102 (427)
T ss_dssp SCCCCEEEEEBT--EEEETTSC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeeeC--EEEECCCC----EEEECCCchhhhccCCC-CHHHHHHHHHHHHhCCCc---CCCCHHHHHHHHHHH
Confidence 357888888776 79999999 99999999999999999 999999999999987553 247889999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. .++++|+|||+||++.|+|+| +.++++ .+||+++++|||.+..++.+++.....
T Consensus 103 ~~~~~--~~~v~~~~ggsea~~~al~~a-~~~~~~------------------~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (427)
T 3fq8_A 103 DAVPS--IEMVRFVNSGTEACMAVLRIM-RAYTGR------------------DKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEEETCCCCSCGGGCSSCCTHHHH
T ss_pred HhCCC--CCEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCCCHHHHHhcCCcccc
Confidence 98863 589999999999999999999 666543 489999999999999988877643211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .++.. +......++.. .++|+| .+.+++.+.+
T Consensus 162 ~~--~~~~~---------------~~~~~~~~~~~--------~~~~~d------------------~~~le~~l~~--- 195 (427)
T 3fq8_A 162 LG--LPSSP---------------GVPKKTTANTL--------TTPYND------------------LEAVKALFAE--- 195 (427)
T ss_dssp HT--CCSCS---------------SSCHHHHTTEE--------EEETTC------------------HHHHHHHHHH---
T ss_pred cC--CCCCC---------------CCCCcccCcee--------ecCCCC------------------HHHHHHHHHh---
Confidence 00 00100 00000000000 012343 3567777764
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++++||+||+ ++.+|.+.++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++|+||++|+
T Consensus 196 --~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 271 (427)
T 3fq8_A 196 --NPGEIAGVILEPI-VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGG 271 (427)
T ss_dssp --STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGT
T ss_pred --CCCCEEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhC
Confidence 3568999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 272 G-~~~G~~~~~~~~~~~~~~ 290 (427)
T 3fq8_A 272 G-LPVGAYGGKREIMQLVAP 290 (427)
T ss_dssp T-SSCEEEEECHHHHTTBTT
T ss_pred C-cceEEEEEcHHHHHhhcc
Confidence 9 699999999999998864
No 23
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=2.6e-38 Score=356.02 Aligned_cols=272 Identities=17% Similarity=0.166 Sum_probs=190.5
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC----CChHHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN----VYEPALECAELL 452 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~----~~~~~~~Lae~L 452 (719)
.++++++| +|+||.||+ +||||++|+|+++|||+ ||+|++|+++|+....+.....+ ..+...+++++|
T Consensus 47 ~~~~~~~G--~~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l 119 (472)
T 1ohv_A 47 CNYEESRG--NYLVDVDGN----RMLDLYSQISSIPIGYS-HPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESL 119 (472)
T ss_dssp BCGGGCBB--TEEEBTTSC----EEEESSHHHHTCSSCBT-CHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTG
T ss_pred ceEEEEEc--CEEEeCCCC----EEEECCCCHhhcccCCC-CHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH
Confidence 34555555 589999999 99999999999999999 99999999999865432211111 245666777777
Q ss_pred HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcc--ccc---cc----cccCCCccccCc--ceEEEEEeCCcccCcc
Q 005009 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD--HEV---LV----DFLGKDTTEKCI--ELKVLALKGSYHGDTL 521 (719)
Q Consensus 453 ~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~--~G~---~~----~~~~~~~~~~~~--r~kII~~~~syHG~t~ 521 (719)
++..+.+ .++|+|+|||+||||+|||+| ++|+.. +|. +. ....+ ..++ |.+||+++++|||+|.
T Consensus 120 ~~~~~~~-~~~v~f~~sGseA~~~Aik~a-~~~~~~~~~~~~~~t~~~~~~~~~~---~~~g~~r~~ii~~~~~yHg~~~ 194 (472)
T 1ohv_A 120 LSVAPKG-MSQLITMACGSCSNENAFKTI-FMWYRSKERGQSAFSKEELETCMIN---QAPGCPDYSILSFMGAFHGRTM 194 (472)
T ss_dssp GGGCCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHHHTTCCCCHHHHHHHHTT---CTTTSCCCEEEEETTCCCCSSH
T ss_pred HHhCCCC-cCEEEEeCCchhHHHHHHHHH-HHHhhhhccCccccccccccccccc---ccccCCCCeEEEECCCcccccH
Confidence 7776544 689999999999999999999 555320 110 00 00000 0022 5799999999999999
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHH
Q 005009 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (719)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~ 601 (719)
+++++++...++.. + + |.. +..++++|. ++.+.. ...++| +.+.....
T Consensus 195 ~~~~~~g~~~~~~~-------~----~--~~~----~~~~~~~p~-~~~~~~--~~~~~~------------~~~~~~d~ 242 (472)
T 1ohv_A 195 GCLATTHSKAIHKI-------D----I--PSF----DWPIAPFPR-LKYPLE--EFVKEN------------QQEEARCL 242 (472)
T ss_dssp HHHHHCCSCHHHHT-------T----S--CCC----CCCEECCCC-CCSSGG--GCHHHH------------HHHHHHHH
T ss_pred HHHhcCCCcccccc-------C----C--CCC----CCcccCCCc-ccCccc--cccccc------------hhHHHHHH
Confidence 99999975432211 0 0 000 111233331 110000 000011 11122345
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.|++.|.+.. ....++++||+||+ ++++|+++++++|+++|+++|++||++||+|||||||||+|.+|+++++|+.
T Consensus 243 ~~l~~~l~~~~--~~~~~~~~vive~v-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~ 319 (472)
T 1ohv_A 243 EEVEDLIVKYR--KKKKTVAGIIVEPI-QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLD 319 (472)
T ss_dssp HHHHHHHHHHH--HTTCCEEEEEECSS-BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCS
T ss_pred HHHHHHHHhcC--CCCCCEEEEEEcCC-cCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCC
Confidence 77888886310 00127999999998 9999999999999999999999999999999999999999999999999997
Q ss_pred --cceeeehhc-cCCCc
Q 005009 682 --PDIACYGKL-LTGGV 695 (719)
Q Consensus 682 --PDIvtlgK~-LggG~ 695 (719)
||++||||+ |||||
T Consensus 320 ~~~Di~t~sK~~l~GG~ 336 (472)
T 1ohv_A 320 DPADVMTFSKKMMTGGF 336 (472)
T ss_dssp SCCSEEEECGGGSSEEE
T ss_pred CCCCEEEEccccccCCc
Confidence 999999999 89995
No 24
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=4.9e-37 Score=339.90 Aligned_cols=266 Identities=24% Similarity=0.326 Sum_probs=213.1
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.+|+ +|||+.++++++++||+ ||+|++|+.+|++++.+.++..+.++...+|+++|++
T Consensus 25 ~~~~~~~~~G~--~v~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 97 (439)
T 3dxv_A 25 FPLAISGGRGA--RLIEENGR----ELIDLSGAWGAASLGYG-HPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLA 97 (439)
T ss_dssp SCCEEEEEEBT--EEEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHH
T ss_pred CCceEEEeeeC--EEEeCCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 46788888776 79999999 99999999999999999 9999999999999886654445678899999999999
Q ss_pred ccCCCCC-CeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC--
Q 005009 455 GVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-- 531 (719)
Q Consensus 455 ~~~~~~~-~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~-- 531 (719)
..+.+ . ++++|++||+||++.|++++ +.+++ +.+||.++++|||.+.+++++++...
T Consensus 98 ~~~~~-~~~~v~~~~ggsea~~~al~~~-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 157 (439)
T 3dxv_A 98 SFPGE-GTHKIWFGHSGSDANEAAYRAI-VKATG------------------RSGVIAFAGAYHGCTVGSMAFSGHSVQA 157 (439)
T ss_dssp TTTCT-TTEEEEEESSHHHHHHHHHHHH-HHHHS------------------CCEEEEETTCCCCSSHHHHCC-------
T ss_pred hCCCC-CCCEEEEeCCHHHHHHHHHHHH-HHHhC------------------CCEEEEECCCCCCCcHHHHhhcCCCchh
Confidence 88644 5 69999999999999999999 55543 34899999999999999999887543
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
++.. +.+ ...+...+++|+++. +. .. ....+.|++.+.+
T Consensus 158 ~~~~--------~~~--------~~~~~~~~~~~~~~~------------~~--------~~----~~d~~~le~~l~~- 196 (439)
T 3dxv_A 158 DAAK--------ADG--------LILLPYPDPYRPYRN------------DP--------TG----DAILTLLTEKLAA- 196 (439)
T ss_dssp --------------C--------EEEECCCCSSSCBTT------------BT--------TS----HHHHHHHHHHHHT-
T ss_pred hccc--------cCC--------CCCCcEEcCCCcccc------------cc--------cH----HHHHHHHHHHHHh-
Confidence 3331 000 011223334332221 00 00 1135778888842
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhcc
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~L 691 (719)
.+.+++++||+||+ ++.+|.+.++++|+++|+++|++||++||+||||+||||+|++++++++++.||++|+||++
T Consensus 197 ---~~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~ 272 (439)
T 3dxv_A 197 ---VPAGSIGAAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGL 272 (439)
T ss_dssp ---SCTTCEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGG
T ss_pred ---cCCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchh
Confidence 34578999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchheeEeCHHHHhhhcC
Q 005009 692 TGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 692 ggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|+ |+|++++++++++.+..
T Consensus 273 ~~G~-riG~~~~~~~~~~~~~~ 293 (439)
T 3dxv_A 273 GGGL-PLSAVIAPAEILDCASA 293 (439)
T ss_dssp GTTS-CCEEEEEEHHHHTSCSS
T ss_pred cCCc-ceEEEEECHHHHhhhcC
Confidence 9995 99999999999988764
No 25
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=1.2e-36 Score=336.76 Aligned_cols=257 Identities=21% Similarity=0.255 Sum_probs=204.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +|||+.+++|++++||+ ||+|++|+.+|+++..+ ..+.++...+++++|++
T Consensus 38 ~p~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~ 107 (434)
T 2epj_A 38 YPFYVKRGEGA--YLYTVDGA----RIVDLVLAYGPLILGHK-HPRVLEAVEEALARGWL---YGAPGEAEVLLAEKILG 107 (434)
T ss_dssp SCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEECCCC----EEEEcccchhcccCCCC-CHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHH
Confidence 37788888776 79999999 99999999999999999 99999999999988432 23568889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ + .++++|++||+||++.|+++| |.++++ .+||+++++|||.+.+++++++......
T Consensus 108 ~~~-~-~~~v~~~~sgseA~~~al~~a-r~~~~~------------------~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 166 (434)
T 2epj_A 108 YVK-R-GGMIRFVNSGTEATMTAIRLA-RGYTGR------------------DLILKFDGCYHGSHDAVLVAAGSAAAHY 166 (434)
T ss_dssp HHC-T-TCEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEEETCCCCSSGGGSEECC------
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CeEEEEcCCcCCCCHHHHHhcCCCcccc
Confidence 885 2 589999999999999999999 666543 4899999999999999888775321110
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. .|+..+ .+.. .... .++ ++++| .+.+++.+++
T Consensus 167 ~--~p~~~g------~~~~-~~~~--~~~--------------~~~~d------------------~~~le~~l~~---- 199 (434)
T 2epj_A 167 G--VPTSAG------VPEA-VARL--TLV--------------TPYND------------------VEALERVFAE---- 199 (434)
T ss_dssp C--EESSTT------CCHH-HHTT--EEE--------------EETTC------------------HHHHHHHHHH----
T ss_pred C--CCCCCC------CCCc-ccCc--eEe--------------cCCCC------------------HHHHHHHHHh----
Confidence 0 001000 0000 0000 011 11333 2567777763
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++++||+||+ ++.+|++.++++|+++|+++|++||++||+||||+|| |+|++++++++|+.||++|+||++|+|
T Consensus 200 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G 276 (434)
T 2epj_A 200 -YGDRIAGVIVEPV-IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG 276 (434)
T ss_dssp -HGGGEEEEEECSS-BCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTT
T ss_pred -CCCCEEEEEEeCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCC
Confidence 2357999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 277 -~~~G~v~~~~~~~~~l~~ 294 (434)
T 2epj_A 277 -FPVGAVAGSREVMSLLTP 294 (434)
T ss_dssp -SSCEEEEECHHHHTTBTT
T ss_pred -cceeeeeecHHHHHhhcc
Confidence 799999999999998764
No 26
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=7.4e-37 Score=341.36 Aligned_cols=267 Identities=18% Similarity=0.186 Sum_probs=206.1
Q ss_pred cCCceEEEe-CCCCcccceeeeccccccccCCCCCCCHHHH-H-HHHH---hhhhcccccCCCCCChHHHHHHHHHHhcc
Q 005009 383 CGENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELA-R-DMGY---TAARFGHVMFPENVYEPALECAELLLQGV 456 (719)
Q Consensus 383 ~G~g~~l~D-~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~-~-Av~~---q~~~~~~~~~~~~~~~~~~~Lae~L~~~~ 456 (719)
+|.|+|+|| .||+ +|||+++++|++++||+ ||+|+ + |+++ |++++.+.. +.+.++...+++++|+++.
T Consensus 41 ~~~g~~~~d~~~g~----~ylD~~~~~~~~~lG~~-~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la~~~ 114 (449)
T 2cjg_A 41 RSGGSYLVDAITGR----RYLDMFTFVASSALGMN-PPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFARVL 114 (449)
T ss_dssp TCBBTEEEBTTTCC----EEEESSHHHHTCSSCBS-CHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHHHHH
T ss_pred eeeeCEEEECCCCc----EEEEccCCccccCCCCC-CHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHHHhc
Confidence 455668999 9999 99999999999999999 99999 9 9999 998876544 3467888999999999988
Q ss_pred CCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCC-CCCCCC
Q 005009 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGF 535 (719)
Q Consensus 457 ~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~-~~~~~~ 535 (719)
+....++|+|++||+|||+.|+|+| |.+++.+|.. . ..+.+++.+||+++++|||.+.+++++++. +.++..
T Consensus 115 ~~~~~~~v~~~~~gseA~~~aik~a-~~~~~~~~~~-~-----~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 187 (449)
T 2cjg_A 115 GDPALPHLFFVEGGALAVENALKAA-FDWKSRHNQA-H-----GIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITAR 187 (449)
T ss_dssp CCTTCCEEEEESSHHHHHHHHHHHH-HHHHHHHHHH-T-----TSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTT
T ss_pred CCCCCCEEEEeCchHHHHHHHHHHH-HHHhcccccc-c-----ccccCCCCEEEEECCCcCCcccchhhhcCCchhhccc
Confidence 5212579999999999999999999 6776521000 0 000123568999999999999999999874 222211
Q ss_pred CCCCCccCCCcccCCCcccccCcceeecCcc--hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPE--WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~--~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
+.++ . .+...+++++ ...+ .+ ......+.+.|++.+.+
T Consensus 188 --------~~~~-~-------~~~~~~~~~d~~~~~~---------------~~------~~~~~~~~~~le~~i~~--- 227 (449)
T 2cjg_A 188 --------FPKF-D-------WPRIDAPYMRPGLDEP---------------AM------AALEAEALRQARAAFET--- 227 (449)
T ss_dssp --------SCCC-C-------CCEECCCCCCTTCCHH---------------HH------HHHHHHHHHHHHHHHHH---
T ss_pred --------CCCC-C-------CCcEEEcCCCchhhcc---------------cc------chhhHHHHHHHHHHHHh---
Confidence 1110 0 1222333322 1100 00 01122345678888863
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..+++++||+||+ |+++|+++++++|+++|+++|++||++||+||||+||||+|++|+++++++.||++|+||++
T Consensus 228 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-- 302 (449)
T 2cjg_A 228 --RPHDIACFVAEPI-QGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-- 302 (449)
T ss_dssp --STTTEEEEEECSE-ETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG--
T ss_pred --cCCceEEEEEeCc-CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc--
Confidence 2357999999998 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccchheeEeCHHHHhh
Q 005009 694 GVIPLAATLATNAVFDS 710 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~ 710 (719)
|+|++++++++++.
T Consensus 303 ---~iG~~~~~~~~~~~ 316 (449)
T 2cjg_A 303 ---QVCGVMAGRRVDEV 316 (449)
T ss_dssp ---SSEEEEECGGGGGS
T ss_pred ---cEEEEEECHHHhhh
Confidence 89999999999886
No 27
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=1e-36 Score=337.02 Aligned_cols=270 Identities=22% Similarity=0.299 Sum_probs=208.0
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.++..+++|.+|.. .|.++++++|. |+||.||+ +|||+.+++|++++||+ ||+|++|+.+|++++
T Consensus 24 ~~~~~~~~~~~~~~~-------~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~ai~~~~~~~ 89 (420)
T 2pb2_A 24 TRATFDEVILPVYAP-------ADFIPVKGKGS--RVWDQQGK----EYIDFAGGIAVTALGHC-HPALVEALKSQGETL 89 (420)
T ss_dssp ----------------------CCSCEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhccccC-------CCceEEeeecC--EEEECCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhc
Confidence 334455556655432 46678887776 79999999 99999999999999999 999999999999987
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+.. ..+.++...+|+++|++..+ .++++|++||+||++.|+|++ +.+...+|. +++.+||++
T Consensus 90 ~~~~-~~~~~~~~~~l~~~la~~~g---~~~v~~~~ggteA~~~al~~~-~~~~~~~~~------------~g~~~vi~~ 152 (420)
T 2pb2_A 90 WHTS-NVFTNEPALRLGRKLIDATF---AERVLFMNSGTEANETAFKLA-RHYACVRHS------------PFKTKIIAF 152 (420)
T ss_dssp CCCC-TTSCCHHHHHHHHHHHHHSS---CSEEEEESSHHHHHHHHHHHH-HHHHHHHTC------------TTCCEEEEE
T ss_pred cccc-CccCCHHHHHHHHHHHhhCC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccC------------CCCCEEEEE
Confidence 6643 23567889999999999886 479999999999999999999 555333222 345689999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+.+|||.+..++++++...++.. +.+.. .+...++ ++|
T Consensus 153 ~~~yh~~~~~~~~~~g~~~~~~~--------~~p~~--------~~~~~~~----------------~~d---------- 190 (420)
T 2pb2_A 153 HNAFHGRSLFTVSVGGQPKYSDG--------FGPKP--------ADIIHVP----------------FND---------- 190 (420)
T ss_dssp TTCCCCSSHHHHHHSSCHHHHTT--------SSSCC--------SCEEEEC----------------TTC----------
T ss_pred eCCcCCcCHHHHHhcCCcccccc--------CCCCC--------CCeEEec----------------CCC----------
Confidence 99999999998888764322211 11100 1111111 222
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+.|++.+. +++++||+||+ ++.||+++++.+++++|+++|++||++||+||||+||||+|++
T Consensus 191 --------~~~le~~i~--------~~~~~vi~~p~-~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~ 253 (420)
T 2pb2_A 191 --------LHAVKAVMD--------DHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253 (420)
T ss_dssp --------HHHHHHHCC--------TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred --------HHHHHHHhc--------cCceEEEEeCC-cCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence 255666664 36899999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++++++++.||++|++|++|+| +|+|++++++++++.+..
T Consensus 254 ~~~~~~~~~~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~ 293 (420)
T 2pb2_A 254 FAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHV 293 (420)
T ss_dssp SHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTCC-
T ss_pred HHHHhcCCCCCeEEecccccCC-CceEEEEEhHHHHHhhcC
Confidence 9999999999999999999999 699999999999888754
No 28
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2.8e-36 Score=328.58 Aligned_cols=254 Identities=23% Similarity=0.315 Sum_probs=209.2
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ++||.||+ +||||.++++++++||+ ||+|++|++++++++.+.. ..+.++...+++++|++
T Consensus 18 ~~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 89 (395)
T 3nx3_A 18 FDIVLEKGQGV--YLFDDKAK----KYLDFSSGIGVCALGYN-HAKFNAKIKAQVDKLLHTS-NLYYNENIAAAAKNLAK 89 (395)
T ss_dssp CSCBEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBS-CHHHHHHHHHHHTTCSCCC-TTSBCHHHHHHHHHHHH
T ss_pred CCceEEeeeee--EEEECCCC----EEEECCCcHHhccCCCC-CHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHH
Confidence 46678887776 79999999 99999999999999999 9999999999999877654 34568899999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|++||+||++.|++++ +.++.++| .++.+||+++.+|||.+..++++++...++.
T Consensus 90 ~~~---~~~v~~~~gg~ea~~~al~~~-~~~~~~~g-------------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 152 (395)
T 3nx3_A 90 ASA---LERVFFTNSGTESIEGAMKTA-RKYAFNKG-------------VKGGQFIAFKHSFHGRTLGALSLTANEKYQK 152 (395)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTT-------------CTTCEEEEETTCCCCSSHHHHTTCCCHHHHG
T ss_pred hcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhccC-------------CCCCEEEEEcCCcCCCCHHHHhhcCCccccc
Confidence 887 479999999999999999999 55543322 2356899999999999999999887543332
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+. ..+...++ ++| .+.+++.+.
T Consensus 153 ~------------~~~~----~~~~~~~~----------------~~d------------------~~~l~~~l~----- 177 (395)
T 3nx3_A 153 P------------FKPL----ISGVKFAK----------------YND------------------ISSVEKLVN----- 177 (395)
T ss_dssp G------------GCSC----CSCEEEEC----------------TTC------------------HHHHHTTCC-----
T ss_pred c------------cCCC----CCCcEEeC----------------CCC------------------HHHHHHhcc-----
Confidence 1 0000 00111111 233 245555442
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++++|++||+ ++++|.+.++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++|+||++++|
T Consensus 178 ---~~~~~v~~~~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G 253 (395)
T 3nx3_A 178 ---EKTCAIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCG 253 (395)
T ss_dssp ---TTEEEEEEESE-ECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTTT
T ss_pred ---CCeEEEEEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccCC
Confidence 47899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHH-HhhhcC
Q 005009 695 VIPLAATLATNAV-FDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i-~~~~~~ 713 (719)
+|+|++++++++ ++.+..
T Consensus 254 -~~~G~~~~~~~~~~~~~~~ 272 (395)
T 3nx3_A 254 -LSVGAFVINQKVASNSLEA 272 (395)
T ss_dssp -SCCEEEEECHHHHHHHSCT
T ss_pred -CceEEEEEchhhhhhhcCC
Confidence 699999999999 877754
No 29
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=5.7e-36 Score=330.42 Aligned_cols=270 Identities=23% Similarity=0.292 Sum_probs=215.8
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++.+++|. ++||.+|+ +|||+.++.|+.++||+ ||+|++|+.++++++.+.. ..+.++...+|+++|++.
T Consensus 26 ~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 97 (433)
T 1zod_A 26 PMIIERAKGS--FVYDADGR----AILDFTSGQMSAVLGHC-HPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANI 97 (433)
T ss_dssp SSCCCEEEBT--EEECTTCC----EEEETTHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHH
T ss_pred CceEEEeecC--EEEeCCCC----EEEEcccchhccccCCC-CHHHHHHHHHHHHhCcccc-cccCCHHHHHHHHHHHHh
Confidence 5567776665 89999999 99999999999999999 9999999999998876533 456688899999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~ 535 (719)
.|.+ .++|+|++||+||++.|++++ +.+++ +.+||+++.+|||.+.+++++++... ...
T Consensus 98 ~~~~-~~~v~~~~gg~ea~~~a~~~~-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~ 156 (433)
T 1zod_A 98 TPPG-LDRALLLSTGAESNEAAIRMA-KLVTG------------------KYEIVGFAQSWHGMTGAAASATYSAG-RKG 156 (433)
T ss_dssp SCTT-CCEEEEESCHHHHHHHHHHHH-HHHHT------------------CCEEEEETTCCCCSSHHHHHTCCSSC-CSS
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHhhC------------------CCeEEEECCCcCCCChhHHhhcCCcc-ccc
Confidence 8743 579999999999999999998 55543 24899999999999999998886432 111
Q ss_pred CCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 005009 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (719)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~ 615 (719)
+.+. ..+...++.|..++.+ |++. .+++.....+.+++.+.+ .
T Consensus 157 --------~~~~--------~~~~~~v~~~~~~~~~--------~~~~---------~~~~~~~d~~~le~~l~~----~ 199 (433)
T 1zod_A 157 --------VGPA--------AVGSFAIPAPFTYRPR--------FERN---------GAYDYLAELDYAFDLIDR----Q 199 (433)
T ss_dssp --------SCCC--------CTTEEEECCCCTTSCC--------CEET---------TEECHHHHHHHHHHHHHH----H
T ss_pred --------cCCC--------CCCceEecCCcccccc--------cCCc---------hhhhHHHHHHHHHHHHHh----c
Confidence 1100 1234455666544321 2220 011112235678888863 1
Q ss_pred CCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCc
Q 005009 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (719)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~ 695 (719)
+++++++||+||+ ++.+|+++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++|+||++|+|
T Consensus 200 ~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G- 277 (433)
T 1zod_A 200 SSGNLAAFIAEPI-LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG- 277 (433)
T ss_dssp CCSCEEEEEECSE-ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT-
T ss_pred CCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCC-
Confidence 2357999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchheeEeCHHHHhhhcC
Q 005009 696 IPLAATLATNAVFDSFVG 713 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 278 ~~ig~~~~~~~~~~~~~~ 295 (433)
T 1zod_A 278 LPLAAIVTSAAIEERAHE 295 (433)
T ss_dssp SSCEEEEECHHHHHHHHH
T ss_pred CCeeEEEEhHHHHHhhcc
Confidence 799999999999987754
No 30
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=2.4e-35 Score=325.27 Aligned_cols=256 Identities=23% Similarity=0.303 Sum_probs=204.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ++||.||+ +||||.+++|++++||+ ||+|++|+++|+++..+ .++.++...+|+++|++
T Consensus 34 ~p~~~~~~~g~--~~~d~~g~----~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~ 103 (424)
T 2e7u_A 34 TPPFLVRGEGA--YVWDADGN----RYLDYVMSWGPLILGHA-HPKVLARVRETLERGLT---FGAPSPLEVALAKKVKR 103 (424)
T ss_dssp CCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHH
Confidence 47788888776 79999999 99999999999999999 99999999999987432 13568889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
+.| + .++++|++||+||++.|+|+| |.++++ .+||.++++|||.+.+++++++......
T Consensus 104 ~~~-~-~~~v~~~~~g~ea~~~al~~a-r~~~~~------------------~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 162 (424)
T 2e7u_A 104 AYP-F-VDLVRFVNSGTEATMSALRLA-RGYTGR------------------PYIVKFRGNYHGHADGLLVEAGSGALTL 162 (424)
T ss_dssp HCT-T-CCEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCCCGGGSEECCSSSCCB
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCCcHHHHHhcCCccccc
Confidence 886 3 589999999999999999999 677543 4899999999999998887765321110
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
..|+..+ .+.. .... .++ ++++| .+.+++.+++
T Consensus 163 --~~p~~~g------~~~~-~~~~--~~~--------------~~~~d------------------~~~le~~l~~---- 195 (424)
T 2e7u_A 163 --GVPSSAG------VPEE-YAKL--TLV--------------LEYND------------------PEGLREVLKR---- 195 (424)
T ss_dssp --CEESSTT------CCHH-HHTT--EEE--------------ECTTC------------------HHHHHHHHHH----
T ss_pred --CCCCCCC------CCCc-cCCc--eEe--------------CCCCC------------------HHHHHHHHHh----
Confidence 0011000 0000 0000 011 11333 2557777753
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++++||+||+ ++++|+++++++|+++|+++ ++||++||+||||+|| |+|.+++++++|+.||++|+||++|+|
T Consensus 196 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G 271 (424)
T 2e7u_A 196 -RGEEIAAIIFEPV-VGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGG 271 (424)
T ss_dssp -HGGGEEEEEECSS-BCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT
T ss_pred -CCCCEEEEEEeCC-CCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCC
Confidence 2357999999998 99999999999999999999 9999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 272 -~~~G~~~~~~~~~~~~~~ 289 (424)
T 2e7u_A 272 -LPAAAYAGRREIMEKVAP 289 (424)
T ss_dssp -SSCEEEEECHHHHTTBTT
T ss_pred -cceEEEEEcHHHHhhhcc
Confidence 799999999999998864
No 31
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=1.3e-35 Score=330.39 Aligned_cols=254 Identities=20% Similarity=0.202 Sum_probs=190.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. ++||.||+ +|||+.+++|++++||+ ||+|++|+.+|+++..+. ++.++...+++++|++
T Consensus 39 ~p~~~~~~~G~--~~~d~~g~----~~iD~~~~~~~~~lg~~-~~~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~ 108 (453)
T 2cy8_A 39 HGLFISDAQGV--HKTDVDGN----VYLDFFGGHGALVLGHG-HPRVNAAIAEALSHGVQY---AASHPLEVRWAERIVA 108 (453)
T ss_dssp CCCCEEEEEBT--EEEETTCC----EEEESCTTTTSCTTCBT-CHHHHHHHHHHHTTTCSS---CSSCHHHHHHHHHHHH
T ss_pred CCceEEEeecC--EEEECCCC----EEEECcccHhhcccCCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHh
Confidence 47778887776 79999999 99999999999999999 999999999999874321 4578889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ + .++++|++||+||++.|+++| |.++++ .+||.++++|||.+.+++++++. .+..
T Consensus 109 ~~~-~-~~~v~~~~gg~eA~~~al~~a-r~~~~~------------------~~vi~~~~~yhg~~~~~~~~~~~-~~~~ 166 (453)
T 2cy8_A 109 AFP-S-IRKLRFTGSGTETTLLALRVA-RAFTGR------------------RMILRFEGHYHGWHDFSASGYNS-HFDG 166 (453)
T ss_dssp HCT-T-CSEEEEESCHHHHHHHHHHHH-HHHHCC------------------CEEEEECC--------------------
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEEcCCcCCCchhhHhhcCC-ccCC
Confidence 876 3 589999999999999999999 666543 48999999999999988776643 1100
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
++..+ .|.. ..... .. ++++| .+.+++.+++
T Consensus 167 ----~~~~g------~~~~-~~~~~--~~--------------~~~~d------------------~~~le~~l~~---- 197 (453)
T 2cy8_A 167 ----QPAPG------VLPE-TTANT--LL--------------IRPDD------------------IEGMREVFAN---- 197 (453)
T ss_dssp --------------------CGGGE--EE--------------ECTTC------------------HHHHHHHHHH----
T ss_pred ----CcCCC------CCcc-ccCce--ee--------------cCCCC------------------HHHHHHHHHh----
Confidence 00000 0000 00000 01 11233 2567777763
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++++||+||+ ++.+|+++++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++++||++++|
T Consensus 198 -~~~~~~~vi~ep~-~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G 274 (453)
T 2cy8_A 198 -HGSDIAAFIAEPV-GSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGG 274 (453)
T ss_dssp -HGGGEEEEEECSS-EHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTT
T ss_pred -cCCCEEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCcEEEEChhhhCC
Confidence 2357999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 275 -~~~G~v~~~~~~~~~l~~ 292 (453)
T 2cy8_A 275 -LPGGILGGREDVMGVLSR 292 (453)
T ss_dssp -SSCEEEEECHHHHTTSSS
T ss_pred -cceEEEechHHHHHHhcc
Confidence 799999999999998764
No 32
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=7e-35 Score=321.71 Aligned_cols=288 Identities=28% Similarity=0.423 Sum_probs=219.3
Q ss_pred CCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC
Q 005009 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (719)
Q Consensus 358 ~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~ 437 (719)
.+++|+|++.... ..++.++.+++|. ++||.+|+ +|||+.++.|++++||+ ||+|++|+.+++++..+..+
T Consensus 10 ~~~~~~~~~~~~~--~~~~~~~~~~~g~--~~~d~~g~----~ylD~~~~~~~~~lg~~-~p~v~~a~~~~~~~~~~~~~ 80 (429)
T 1s0a_A 10 QRHILHPFTSMTS--PLPVYPVVSAEGC--ELILSDGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHVMF 80 (429)
T ss_dssp HHHBCCTTCCSSS--CCCCEEEEEEEBT--EEEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHHCSCCCC
T ss_pred HHhhccccccccc--cCCceeEEeeeee--EEEeCCCC----EEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccccc
Confidence 3467999877542 1223347787775 79999999 99999999999999999 99999999999988654332
Q ss_pred CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcc
Q 005009 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (719)
Q Consensus 438 ~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syH 517 (719)
..+.++...+++++|+++.+.+ .++++|++||+||++.|++++ +.+++.+|. .+.+||+++.+||
T Consensus 81 ~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggtea~~~ai~~~-~~~~~~~g~-------------~~~~vi~~~~~yh 145 (429)
T 1s0a_A 81 GGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKGE-------------ARQRFLTFRNGYH 145 (429)
T ss_dssp SSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHTC-------------CCCEEEEETTCCC
T ss_pred cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHhcccCC-------------CCCeEEEECCCCC
Confidence 3456778899999999988643 579999999999999999998 666542221 1458999999999
Q ss_pred cCccccccccCCCC-CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhH
Q 005009 518 GDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (719)
Q Consensus 518 G~t~galslt~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~ 596 (719)
|.+.+++++++... ++.. | .+. ..+...++.|...... +...+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~----~----~~~--------~~~~~~~~~~~~~~~~-----~~~~~d-------------- 190 (429)
T 1s0a_A 146 GDTFGAMSVCDPDNSMHSL----W----KGY--------LPENLFAPAPQSRMDG-----EWDERD-------------- 190 (429)
T ss_dssp CSSHHHHTTSCTTTTTGGG----G----TTT--------SCCCEEECCCCSBC-C-----CCCGGG--------------
T ss_pred CCchhhhhhcCCchhhccc----c----cCC--------CCCceEeCCCcccccc-----cchHHH--------------
Confidence 99998888876432 2211 1 000 0122334443211000 000011
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc
Q 005009 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (719)
Q Consensus 597 ~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e 676 (719)
.+.+++.+.+ .++++++|++||+.++.+|.+.++++|+++|+++|++||++||+||||+||||+|.+++++
T Consensus 191 ----~~~l~~~l~~-----~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~ 261 (429)
T 1s0a_A 191 ----MVGFARLMAA-----HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACE 261 (429)
T ss_dssp ----GHHHHHHHHH-----HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred ----HHHHHHHHHh-----CCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhh
Confidence 2556667753 2357899999994378899999999999999999999999999999999999999988999
Q ss_pred ccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 677 ~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++++.||++|+||+++|||+|+|++++++++++.+..
T Consensus 262 ~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~ 298 (429)
T 1s0a_A 262 HAEIAPDILCLGKALTGGTMTLSATLTTREVAETISN 298 (429)
T ss_dssp GGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHT
T ss_pred hcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhc
Confidence 9999999999999999998899999999999988765
No 33
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.2e-33 Score=309.70 Aligned_cols=277 Identities=21% Similarity=0.267 Sum_probs=211.8
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++.+++|. ++||.+|+ +|||+.++.|++++||+.||+|++|+.+++++..+.....+.++...+++++|++
T Consensus 24 ~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 97 (419)
T 2eo5_A 24 FPLVIDHGEGV--WIYDVDGN----KYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVT 97 (419)
T ss_dssp CCCCEEEEEBT--EEEETTSC----EEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEECCCC----EEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHH
Confidence 36677787765 79999999 9999999999999999868999999999998875533234667889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~ 533 (719)
..|.+..++++|++||+||++.|++++ +.++ +.+||+++.+|||.+.+++++++.. .++
T Consensus 98 ~~~~~~~~~v~~~~gg~ea~~~ai~~~-~~~~-------------------~~~vi~~~p~yh~~~~~~~~~~~~~~~~~ 157 (419)
T 2eo5_A 98 YSPGNFQKKVFFSNSGTEAIEASIKVV-KNTG-------------------RKYIIAFLGGFHGRTFGSISLTASKAVQR 157 (419)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HTTS-------------------CCEEEEETTCCCCSSHHHHHHCCSCGGGG
T ss_pred hCCCCcCCEEEEeCchHHHHHHHHHHH-HHhh-------------------CCcEEEECCCcCCCCHhhHhhcCCccccc
Confidence 887431258999999999999999998 4433 2489999999999999999888753 232
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHH-HHHhcCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS-QNLLQNP 612 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le-~~l~~~~ 612 (719)
.. ..+. ..+...++.++.|+.. |... .+ .++.+++. ...+.++ +.+.+.
T Consensus 158 ~~--------~~~~--------~~~~~~v~~~~~~~~~--------~g~~--~~--~~~~~~~~-~~~~~l~~~~i~~~- 207 (419)
T 2eo5_A 158 SI--------VGPF--------MPGVIHVPYPNPYRNP--------WHIN--GY--ENPSELVN-RVIEFIEDYIFVNL- 207 (419)
T ss_dssp CS--------SCCC--------CTTEEEECCCCSSSCT--------TCCC--TT--TCHHHHHH-HHHHHHHHTHHHHT-
T ss_pred cc--------cCCC--------CCCCEEECCCcccccc--------cccc--cc--ccchhhHH-HHHHHHHHHHHhhc-
Confidence 21 0000 0123344544433210 0000 00 00000111 2356777 777631
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
.+++++++||+||+ ++.+|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++|+||++|
T Consensus 208 --~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~ 284 (419)
T 2eo5_A 208 --VPPEEVAGIFFEPI-QGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALG 284 (419)
T ss_dssp --CCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG
T ss_pred --cCCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEeccccc
Confidence 12257899999998 999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCccchheeEeCHHHHhhh
Q 005009 693 GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~ 711 (719)
+||+|+|+++++++++ .+
T Consensus 285 ~G~~riG~~~~~~~~~-~~ 302 (419)
T 2eo5_A 285 GGIMPIGATIFRKDLD-FK 302 (419)
T ss_dssp TTTSCCEEEEEEGGGC-CC
T ss_pred CCccceEEEEEchHhh-cC
Confidence 9988999999999987 66
No 34
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=100.00 E-value=8.8e-34 Score=294.37 Aligned_cols=196 Identities=21% Similarity=0.199 Sum_probs=163.9
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCC-CCCChHHHHHHhcCCCccccCCCcccccc
Q 005009 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY-PHDSDSRFLFTKLPSLSLRRNFPSSLILS 113 (719)
Q Consensus 35 ~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (719)
..|++|||+||+||||||+||++|+++|+ ++|++|.|||||++|+ +++.|+.++.+.+ ++
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~-----~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~-g~------------- 84 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAAR-----QAGIDVAVCKPVQTGTARGDDDLAEVGRLA-GV------------- 84 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEEEEEECCGGGTCCHHHHHHHHH-CC-------------
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEeeeecCCCCCCHHHHHHHHHc-CC-------------
Confidence 34689999999999999999999999995 8999999999999987 3458888776553 21
Q ss_pred chhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCC-CC
Q 005009 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG-VV 192 (719)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~-~~ 192 (719)
....|++.|+.|++|+.+++++ +. .+
T Consensus 85 ----------------------------------------------------~~~~~~~~~~~p~sP~~aa~~~-~~~~~ 111 (251)
T 3fgn_A 85 ----------------------------------------------------TQLAGLARYPQPMAPAAAAEHA-GMALP 111 (251)
T ss_dssp ----------------------------------------------------CEEEEEEECSSSSCHHHHHHHT-TCCCC
T ss_pred ----------------------------------------------------CCCCCCeeECCCCChHHHHHHc-CCCCC
Confidence 0125789999999999999998 77 78
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCC-chhHHHHhhcCCCEEEEEcCCCChHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG-SLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~-~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (719)
+.++|.+.|.++.+. +|++||||+||+++|+.+. .+++|+|+.+++|||||++.++|+++++++++
T Consensus 112 ~~~~i~~~~~~l~~~-------------~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~ 178 (251)
T 3fgn_A 112 ARDQIVRLIADLDRP-------------GRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTL 178 (251)
T ss_dssp CHHHHHHHHHTTCCT-------------TCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-------------CCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHH
Confidence 899999988876543 9999999999999997665 89999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEccCC-CCC--HHHHHHhhcCCCcEEe-cCCCCC
Q 005009 272 ESLKLRGYDVVAVVFEDHG-LVN--EVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~-~~~--~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.++.+|++|.|||+|++. ... .....+.+++-+||+| ||+.+.
T Consensus 179 ~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~vpvLG~iP~~~~ 226 (251)
T 3fgn_A 179 EALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARIAMVRAALPAGAA 226 (251)
T ss_dssp HHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHHSCEEEEEETTGG
T ss_pred HHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHhCCEEEEeeCCCC
Confidence 9999999999999999983 221 1222333321199999 999864
No 35
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=100.00 E-value=3e-33 Score=288.85 Aligned_cols=182 Identities=24% Similarity=0.288 Sum_probs=153.1
Q ss_pred CCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC----CCChHHHHHHhcCCCccccC
Q 005009 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP----HDSDSRFLFTKLPSLSLRRN 105 (719)
Q Consensus 30 ~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~----~~~d~~~~~~~~~~~~~~~~ 105 (719)
.-.+..|++.|||+||+||||||+||++|+++|. ++|++|+|||||++|+. .+.|..++.+....+
T Consensus 14 ~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~-----~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~----- 83 (242)
T 3qxc_A 14 RENLYFQGHMLFISATNTNAGKTTCARLLAQYCN-----ACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLL----- 83 (242)
T ss_dssp -----CCCEEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTT-----
T ss_pred hhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHH-----
Confidence 3455678899999999999999999999999995 88999999999999886 357777652221000
Q ss_pred CCccccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHh
Q 005009 106 FPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE 185 (719)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~ 185 (719)
..+++ ...++++.|++|++|+.+++
T Consensus 84 ------------------------~~g~~-------------------------------~~~~~p~~~~~p~sp~~aa~ 108 (242)
T 3qxc_A 84 ------------------------DRSLT-------------------------------LKDISFYRYHKVSAPLIAQQ 108 (242)
T ss_dssp ------------------------CTTCC-------------------------------HHHHCCEECSSSSCHHHHHH
T ss_pred ------------------------hCCCC-------------------------------hHHeeeEEECCCCChHHHHH
Confidence 00011 12378999999999999999
Q ss_pred HhcCC--CCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCCh
Q 005009 186 RESGG--VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG 263 (719)
Q Consensus 186 ~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~ 263 (719)
++ +. .++.++|.+.|.++.+. +|++||||+||+++|+..+.+++|+|+.+++|||||++.++|+
T Consensus 109 ~~-g~~~~i~~~~I~~~~~~l~~~-------------~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~ 174 (242)
T 3qxc_A 109 EE-DPNAPIDTDNLTQRLHNFTKT-------------YDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGL 174 (242)
T ss_dssp HH-CTTCCCCHHHHHHHHHHGGGT-------------CSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTH
T ss_pred Hc-CCCCcCCHHHHHHHHHHHHhc-------------CCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcH
Confidence 99 87 78999999999987654 9999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccCCC
Q 005009 264 ISGTISAYESLKLRGYDVVAVVFEDHGL 291 (719)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi~N~~~~ 291 (719)
+++++++++.++.+|++ .|||+|++..
T Consensus 175 i~~~~lt~~~l~~~g~~-~GvIlN~v~~ 201 (242)
T 3qxc_A 175 INDCLLNDFLLKSHQLD-YKIAINLKGN 201 (242)
T ss_dssp HHHHHHHHHHHHTSSSC-EEEEECCCTT
T ss_pred HHHHHHHHHHHHhCCCC-EEEEEeCCCC
Confidence 99999999999999999 9999999943
No 36
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=100.00 E-value=1.6e-33 Score=288.57 Aligned_cols=202 Identities=20% Similarity=0.285 Sum_probs=166.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCC------hHHHHHHhcCCCccccCCCcc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDS------DSRFLFTKLPSLSLRRNFPSS 109 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~------d~~~~~~~~~~~~~~~~~~~~ 109 (719)
+|++|||+||+||+|||+||++|+++|. ++|++|.|||||++|+.... |..+ ... ++
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~-----~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~--~~~-~~--------- 65 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCE-----HQNIKSLCLKPVASGQSQFSELCEDVESIL--NAY-KH--------- 65 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESBCSSSSSBHHHHHHH--HHT-TT---------
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEecceeecCccCCCCCChHHHHH--Hhc-CC---------
Confidence 4689999999999999999999999995 89999999999999875432 3222 111 11
Q ss_pred ccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcC
Q 005009 110 LILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESG 189 (719)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~ 189 (719)
+.+ ...+|++.|+.|++||.+++++ +
T Consensus 66 ----------------------~~~-------------------------------~~~~~~~~~~~p~sp~~aa~~~-~ 91 (228)
T 3of5_A 66 ----------------------KFT-------------------------------AAEINLISFNQAVAPHIIAAKT-K 91 (228)
T ss_dssp ----------------------SSC-------------------------------HHHHCSEEESSSSCHHHHHHHT-T
T ss_pred ----------------------CCC-------------------------------hhhEEEEEECCCCCHHHHHHHc-C
Confidence 111 1237899999999999999998 8
Q ss_pred CCCCHHHHHHHHHH-HHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHH
Q 005009 190 GVVGDSKVIETLGK-CLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTI 268 (719)
Q Consensus 190 ~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~ 268 (719)
..++.+++.+.+.+ +.+. +|++||||+||+++|+..+.+++|+|+.+++|||||++.++|++++++
T Consensus 92 ~~i~~~~i~~~~~~~l~~~-------------~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~ 158 (228)
T 3of5_A 92 VDISIENLKQFIEDKYNQD-------------LDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTL 158 (228)
T ss_dssp CCCCHHHHHHHHHGGGGSS-------------CSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcc-------------CCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHH
Confidence 88899999999987 5543 999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEccCCC--C----CHHHHHHhhcCCCcEEe-cCCCCCCCcchhhhhhhhc
Q 005009 269 SAYESLKLRGYDVVAVVFEDHGL--V----NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWFDES 328 (719)
Q Consensus 269 ~~~~~l~~~~~~v~gvi~N~~~~--~----~~~~l~~~~~~~~pvlg-lP~~~~~~~~~~~~~l~~~ 328 (719)
.+++.++.+|+++.|||+|++.. . +.+.|++++ ++||+| || ...++..|++..
T Consensus 159 ~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~--g~pvLG~iP-----~~~~~~~~~~~~ 218 (228)
T 3of5_A 159 LTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELS--GYKCSAKIS-----RNADYLDFIDLS 218 (228)
T ss_dssp HHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHH--SCCCSEEEE-----SSCCHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhh--CCCEEEECC-----CchHhhhhcCHH
Confidence 99999999999999999999832 2 244455555 999999 99 234566666543
No 37
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.9e-32 Score=297.66 Aligned_cols=258 Identities=20% Similarity=0.269 Sum_probs=209.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ++||.||+ +|||+.+++++.++||+ ||+|.+|+.++++++.+... .+..+...+++++|++
T Consensus 18 ~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 89 (392)
T 3ruy_A 18 LPIVISKAEGV--WVEDPEGN----RYMDLLSAYSAVNQGHR-HPKIINALIDQANRVTLTSR-AFHSDQLGPWYEKVAK 89 (392)
T ss_dssp CSCEECEEEBT--EEECTTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEETTHHHHHHHHHH
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEEcCCChhhhccCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHH
Confidence 46678887776 79999999 99999999999999999 99999999999998776542 2457788999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|++||+||++.|++++++....++|. .+++.+||+...+|||.+.+++++++...++.
T Consensus 90 ~~g---~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~-----------~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 155 (392)
T 3ruy_A 90 LTN---KEMVLPMNTGAEAVETAIKTARRWAYDVKKV-----------EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKR 155 (392)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC-----------CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTT
T ss_pred hcC---CCEEEEeCcHHHHHHHHHHHHHHhhhhccCC-----------CCCCcEEEEEcCCcCCCCHhhhhccCChhhcc
Confidence 887 4799999999999999999984221222221 13356899999999999999999887544433
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.+ + +... ++++| .+.+++.+.
T Consensus 156 ~--------~~~~~--~------~~~~----------------~~~~d------------------~~~l~~~l~----- 180 (392)
T 3ruy_A 156 G--------FGPML--P------GIIV----------------IPYGD------------------LEALKAAIT----- 180 (392)
T ss_dssp T--------CCSCC--S------SEEE----------------ECTTC------------------HHHHHHHCC-----
T ss_pred c--------cCCCC--C------CCee----------------eCccc------------------HHHHHHHhc-----
Confidence 2 11100 0 0001 11233 255666663
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++|++||+ ++..|.+.++++|+++|.++|++||++||+||+|+|||++|++++++++++.||++|+||+|+||
T Consensus 181 ---~~~~~v~~~~~-~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG 256 (392)
T 3ruy_A 181 ---PNTAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGG 256 (392)
T ss_dssp ---TTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred ---cCeEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEchhhhCC
Confidence 47899999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
++|+|++++++++++.+..
T Consensus 257 ~~~~G~~~~~~~~~~~~~~ 275 (392)
T 3ruy_A 257 VFPISCAAANRDILGVFEP 275 (392)
T ss_dssp TSCCEEEEECHHHHTTCCT
T ss_pred hhhhEEEEECHHHHhhhcc
Confidence 8899999999999987754
No 38
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.98 E-value=1.8e-31 Score=290.74 Aligned_cols=255 Identities=27% Similarity=0.345 Sum_probs=206.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ++||.+|+ +|||+.++++++++||+ ||+|.+|+.++++++.+.. ..+.++...+++++|++
T Consensus 21 ~~~~~~~~~g~--~~~~~~g~----~~lD~~~~~~~~~lg~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 92 (406)
T 4adb_A 21 APFIPVRGEGS--RLWDQQGK----EYIDFAGGIAVNALGHA-HPELREALNEQASKFWHTG-NGYTNEPVLRLAKKLID 92 (406)
T ss_dssp CSSCEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTCSCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCceEEeeccC--EEEeCCCC----EEEECCCchhhcccCCC-CHHHHHHHHHHHHhccccc-CCcCCHHHHHHHHHHHh
Confidence 35677787776 79999999 99999999999999999 9999999999998865543 34567889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|++||++|++.|++++ +.+...+|. +++.+||..+.+|||.+..++.+++...++.
T Consensus 93 ~~~---~~~v~~~~gg~~a~~~al~~~-~~~~~~~~~------------~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~ 156 (406)
T 4adb_A 93 ATF---ADRVFFCNSGAEANEAALKLA-RKFAHDRYG------------SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQ 156 (406)
T ss_dssp HSS---CSEEEEESSHHHHHHHHHHHH-HHHHHHHTC------------TTCCEEEEETTCCCCSSHHHHHHSSCGGGTG
T ss_pred hCC---CCeEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcCCCcHHHhhccCCccccc
Confidence 987 469999999999999999988 444322222 3456899999999999999888876543322
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.. .+...++ ++| .+.+++.+.
T Consensus 157 ~------------~~~~~----~~~~~~~----------------~~d------------------~~~l~~~l~----- 181 (406)
T 4adb_A 157 D------------FAPLP----ADIRHAA----------------YND------------------INSASALID----- 181 (406)
T ss_dssp G------------GCSCC----SSEEEEC----------------TTC------------------HHHHHTTCS-----
T ss_pred c------------CCCCC----CCceEeC----------------CCc------------------HHHHHHHhc-----
Confidence 1 00000 0111111 222 244554442
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++|++||+ ++.||+++++.+++++|.++|++||++||+||+|+|||++|.+++++.+++.||++|++|++++|
T Consensus 182 ---~~~~~v~~~p~-np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G 257 (406)
T 4adb_A 182 ---DSTCAVIVEPI-QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG 257 (406)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTT
T ss_pred ---CCeEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEEechhhcCC
Confidence 47899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 258 -~r~G~~~~~~~~~~~~~~ 275 (406)
T 4adb_A 258 -FPVGALLATEECARVMTV 275 (406)
T ss_dssp -SCCEEEEECHHHHHTCCT
T ss_pred -CCeEEEEEcHHHHhhhcc
Confidence 799999999999988754
No 39
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.97 E-value=7.5e-31 Score=287.90 Aligned_cols=281 Identities=24% Similarity=0.323 Sum_probs=214.0
Q ss_pred hhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc
Q 005009 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (719)
Q Consensus 356 ~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~ 435 (719)
++.+++|++++. ..|.++.+++|. ++||.+|+ +|||+.++.|+.++||. ||+|.+|+.+++++..+.
T Consensus 10 ~~~~~~~~~~~~------~~~~~~~~~~g~--~~~d~~g~----~~id~~~~~~~~~lg~~-~~~v~~a~~~~~~~~~~~ 76 (426)
T 1sff_A 10 RRSQAIPRGVGQ------IHPIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLSHT 76 (426)
T ss_dssp HHHHHSCTTBCC------SEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHTTTCSCC
T ss_pred HHHHhcCccccc------cCCceEEecccC--EEEeCCCC----EEEEcccChhhcccCCC-CHHHHHHHHHHHHhCCCc
Confidence 334445555432 247788887775 79999999 99999999999999999 999999999999876543
Q ss_pred cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCC
Q 005009 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (719)
Q Consensus 436 ~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~s 515 (719)
....+.++...+|.++|+++++.+.-++++|+++|+||++.|+++| |.++++ .+||..+.+
T Consensus 77 ~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a-~~~~~~------------------~~vi~~~p~ 137 (426)
T 1sff_A 77 CFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR------------------SGTIAFSGA 137 (426)
T ss_dssp CTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHTC------------------CEEEEETTC
T ss_pred cccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCC
Confidence 2223447788999999999884321278999999999999999988 555432 379999999
Q ss_pred cccCccccccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCch
Q 005009 516 YHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (719)
Q Consensus 516 yHG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~ 594 (719)
|||.+..++.+++.. .++.. +++. ..+...++++..++ +.
T Consensus 138 y~~~~~~~~~~~g~~~~~~~~--------~~~~--------~~~v~~v~~~~~~~-----------~~------------ 178 (426)
T 1sff_A 138 YHGRTHYTLALTGKVNPYSAG--------MGLM--------PGHVYRALYPCPLH-----------GI------------ 178 (426)
T ss_dssp CCCSSHHHHHHSSCCTTTTTT--------SCCC--------CSSEEEECCCBGGG-----------TB------------
T ss_pred cCCCchHhhhhcCCccccccc--------cCCC--------CCCcEEeCCCcccc-----------cc------------
Confidence 999998888877642 12211 1110 01223344442221 00
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc
Q 005009 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (719)
Q Consensus 595 ~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a 674 (719)
......+.+++.+.+. .++.++++|++||+ +++.|.+.++++++++|.++|++||++||+||+++|||++|.+++
T Consensus 179 -~~~~d~~~l~~~l~~~---~~~~~~~~v~~~p~-~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~ 253 (426)
T 1sff_A 179 -SEDDAIASIHRIFKND---AAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFA 253 (426)
T ss_dssp -CHHHHHHHHHHHHHHT---CCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred -chHHHHHHHHHHHHhc---cCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhh
Confidence 0011135677777531 12357899999998 888998999999999999999999999999999999999999888
Q ss_pred ccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 675 ~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++.+++.||+++++|++|+| +|+|++++++++++.+..
T Consensus 254 ~~~~~~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~ 291 (426)
T 1sff_A 254 MEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAP 291 (426)
T ss_dssp GGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCT
T ss_pred hhhcCCCCCEEEEcccccCC-CceEEEEEcHHHHhhhcc
Confidence 89999999999999999999 799999999999988753
No 40
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.96 E-value=1.9e-28 Score=266.93 Aligned_cols=253 Identities=22% Similarity=0.314 Sum_probs=198.9
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++.+++|. ++||.+|+ +|||+.+++|++++||+ ||++.+|+.++++++.+.. ..+..+...+++++|+
T Consensus 21 ~~~~~~~~~~g~--~~~d~~g~----~~ld~~~~~~~~~lg~~-~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la 92 (397)
T 2ord_A 21 RFPATFVYGKGS--WIYDEKGN----AYLDFTSGIAVNVLGHS-HPRLVEAIKDQAEKLIHCS-NLFWNRPQMELAELLS 92 (397)
T ss_dssp CCSCEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCSCCC-TTSEEHHHHHHHHHHH
T ss_pred CCCceEEeeecC--EEEECCCC----EEEECCccccccccCCC-CHHHHHHHHHHHHhcccCc-cccCCHHHHHHHHHHH
Confidence 457788887776 79999999 99999999999999999 9999999999998866532 2244678899999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
++.+ .++++|++||+||++.|++.+ +.+... |. +++.+||.++.+|||.+..++.+++...++
T Consensus 93 ~~~g---~~~v~~~~gg~~a~~~al~~~-~~~~~~-~~------------~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~ 155 (397)
T 2ord_A 93 KNTF---GGKVFFANTGTEANEAAIKIA-RKYGKK-KS------------EKKYRILSAHNSFHGRTLGSLTATGQPKYQ 155 (397)
T ss_dssp HTTT---SCEEEEESSHHHHHHHHHHHH-HHHHHH-HC------------TTCCEEEEEBTCCCCSSHHHHHHSBCHHHH
T ss_pred HhcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhc-CC------------CCCceEEEEcCCcCCCchhhhhccCChhhc
Confidence 9886 479999999999999999988 433211 00 223579999999999988777766532111
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +.+.+ .+...++ ++| .+.+++.+.
T Consensus 156 ~~--------~~p~~--------~~~~~~~----------------~~d------------------~~~l~~~l~---- 181 (397)
T 2ord_A 156 KP--------FEPLV--------PGFEYFE----------------FNN------------------VEDLRRKMS---- 181 (397)
T ss_dssp GG--------GCSCC--------TTEEEEC----------------TTC------------------HHHHHHHCC----
T ss_pred cc--------cCCCC--------CCeeEec----------------CCC------------------HHHHHHHhh----
Confidence 10 00000 0111111 222 245666663
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
+++++|++||+ ++..|.+.++.+++++|.++|++||++||+||+++|||++|+++..+.+++.||+++++|.+++
T Consensus 182 ----~~~~~v~~~~~-~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~ 256 (397)
T 2ord_A 182 ----EDVCAVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGG 256 (397)
T ss_dssp ----TTEEEEEECSE-ECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGT
T ss_pred ----cCeEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeeccccCC
Confidence 36899999997 9999998889999999999999999999999999999999998888888999999999999999
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +++|+++++++++ .+.
T Consensus 257 G-~r~G~~~~~~~~~-~l~ 273 (397)
T 2ord_A 257 G-VPIGAVIVNERAN-VLE 273 (397)
T ss_dssp T-SCCEEEEECSTTC-CCC
T ss_pred C-cCeEEEEEchHhc-ccC
Confidence 9 6999999999877 654
No 41
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.95 E-value=4.8e-27 Score=255.37 Aligned_cols=251 Identities=23% Similarity=0.274 Sum_probs=198.4
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++.+++|. ++||.+|+ +|||+.++.+++++||. +|+|.+|+.+++++..+.. ..+..+...+++++|++
T Consensus 27 ~~~~~~~~~g~--~~~d~~g~----~~ld~~~~~~~~~~g~~-~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 98 (395)
T 1vef_A 27 HDLLIVRGQGA--RVWDAEGN----EYIDCVGGYGVANLGHG-NPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTA 98 (395)
T ss_dssp CSSCEEEEEBT--EEEETTSC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCccEEecccC--EEEeCCCC----EEEEccCccccccCCCC-CHHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHHHH
Confidence 45677787775 79999999 99999999999999999 9999999999998765432 23457888999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
+.+.+ .+.++|++||++|++.|++.+ +.++. +.+||.++.+|||.+..++.+++....+.
T Consensus 99 ~~~~~-~~~v~~~~gg~~a~~~al~~~-~~~~~------------------~~~vi~~~~~y~~~~~~~~~~~g~~~~~~ 158 (395)
T 1vef_A 99 ILPPE-LNRVFPVNSGTEANEAALKFA-RAHTG------------------RKKFVAAMRGFSGRTMGSLSVTWEPKYRE 158 (395)
T ss_dssp TSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHS------------------CCEEEEETTCCCCSSHHHHHTCCCHHHHG
T ss_pred hcCCC-cCEEEEcCcHHHHHHHHHHHH-HHHhC------------------CCeEEEEcCCcCCCchhhhhhcCCccccc
Confidence 88533 478999999999999999987 44432 24799999999998887776655321110
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +. |.. .+...++ ++| .+.+++.+.
T Consensus 159 ~--------~~-----p~~---~~~~~~~----------------~~d------------------~~~l~~~i~----- 183 (395)
T 1vef_A 159 P--------FL-----PLV---EPVEFIP----------------YND------------------VEALKRAVD----- 183 (395)
T ss_dssp G--------GC-----SCS---SCEEEEC----------------TTC------------------HHHHHHHCC-----
T ss_pred c--------cC-----CCC---CCeeEeC----------------CCc------------------HHHHHHHhc-----
Confidence 0 00 000 0000111 122 255666664
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++|+++|+ ++..|.+.++++++++|.++|++||++||+||+++|||++|+.+.++.+++.||+++++|.+++|
T Consensus 184 ---~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~g 259 (395)
T 1vef_A 184 ---EETAAVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG 259 (395)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT
T ss_pred ---cCEEEEEEeCc-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEcccccCC
Confidence 36889999998 89899999999999999999999999999999999999999988888889999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+++|++++++++++.+..
T Consensus 260 -~~~G~~~~~~~~~~~l~~ 277 (395)
T 1vef_A 260 -VPLGVAVMREEVARSMPK 277 (395)
T ss_dssp -SSCEEEEEEHHHHHTSCT
T ss_pred -CceEEEEehHHHHhhhcc
Confidence 799999999999887754
No 42
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.94 E-value=4.6e-26 Score=245.34 Aligned_cols=256 Identities=22% Similarity=0.287 Sum_probs=198.5
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++.+++|. ++||.+|+ .|||+.++..++.+||. +|++.+|+.+++++..+.. ..+..+...+|.++|+
T Consensus 9 ~~~~~~~~~~g~--~~~~~~g~----~~ld~~~~~~~~~~g~~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la 80 (375)
T 2eh6_A 9 RLPVKFVRGKGV--YLYDEEGK----EYLDFVSGIGVNSLGHA-YPKLTEALKEQVEKLLHVS-NLYENPWQEELAHKLV 80 (375)
T ss_dssp CEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBS-CHHHHHHHHHHHHHCSCCC-TTBCCHHHHHHHHHHH
T ss_pred CCCccEEeeecC--EEEeCCCC----EEEEcCCcccccccCCC-CHHHHHHHHHHHHhccccC-cccCCHHHHHHHHHHH
Confidence 357788887776 79999999 99999999988899999 9999999999998764322 2344667889999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
++.+. -+.+++++||++|++.|++++ +.++.+ +. +++.+||..+.+|||....++.+++...++
T Consensus 81 ~~~g~--~~~v~~~~g~t~a~~~~~~~~-~~~~~~-~~------------~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~ 144 (375)
T 2eh6_A 81 KHFWT--EGKVFFANSGTESVEAAIKLA-RKYWRD-KG------------KNKWKFISFENSFHGRTYGSLSATGQPKFH 144 (375)
T ss_dssp HTSSS--CEEEEEESSHHHHHHHHHHHH-HHHHHH-TT------------CCCCEEEEEBTCCCCSSHHHHHHCBCGGGT
T ss_pred hhcCC--CCeEEEeCchHHHHHHHHHHH-HHHhcc-CC------------CCCCEEEEECCCcCCCchhhhhhcCCcccc
Confidence 98863 178999999999999999987 544311 00 234689999999999988777765432211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .. |. .++...++ +.| .+.+++.+.
T Consensus 145 ~~--------~~-----~~---~~~~~~~~----------------~~d------------------~~~l~~~l~---- 170 (375)
T 2eh6_A 145 KG--------FE-----PL---VPGFSYAK----------------LND------------------IDSVYKLLD---- 170 (375)
T ss_dssp TT--------TC-----SC---CSSEEEEC----------------TTC------------------HHHHHTTCC----
T ss_pred CC--------CC-----CC---CCCceeCC----------------Cch------------------HHHHHHHhc----
Confidence 10 00 00 00111111 122 244554442
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++|+++|. ++..|.+.++++++++|.++|++||+++|+||+++|||++|..+..+.+|+.||++++||.+++
T Consensus 171 ----~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~SK~~~~ 245 (375)
T 2eh6_A 171 ----EETAGIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGG 245 (375)
T ss_dssp ----TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ----CCeEEEEEeCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEcccccC
Confidence 36899999997 9999999999999999999999999999999999999999987778888989999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +++|++++++++++.+..
T Consensus 246 g-~~~G~~~~~~~~~~~~~~ 264 (375)
T 2eh6_A 246 G-VPIGAILAREEVAQSFTP 264 (375)
T ss_dssp T-SCCEEEEEEHHHHTTCCT
T ss_pred C-CCeEEEEEcHHHHhhhcC
Confidence 9 799999999999887754
No 43
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.87 E-value=9.4e-22 Score=216.39 Aligned_cols=236 Identities=12% Similarity=0.048 Sum_probs=169.0
Q ss_pred ecCCceEEEeCC--CCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC
Q 005009 382 RCGENFSVYQDQ--KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459 (719)
Q Consensus 382 ~~G~g~~l~D~d--G~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~ 459 (719)
.+|.|+++||.+ |+ .||||..| .+..+. ||+|++|++++++...+.. .....+...++++.|.+..+..
T Consensus 46 ~~g~g~~~~d~~~~g~----~~i~~~~~---~~~~~~-~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~l~~~l~~~~g~~ 116 (421)
T 3l8a_A 46 RLNQFTYKWKTSENNP----ELLQMWVA---DMDFLP-VPEIKEAIINYGREHIFGY-NYFNDDLYQAVIDWERKEHDYA 116 (421)
T ss_dssp CTTTTBTTTGGGTTCT----TCEECCSS---CCCSCC-CHHHHHHHHHHHHHCCSSC-BCCCHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCCccccccCCCC----CeeecccC---CCCCCC-CHHHHHHHHHHHhcCCcCC-CCCCHHHHHHHHHHHHHHhCCC
Confidence 346667899999 78 99999664 345568 9999999999998743322 1223566777888887765411
Q ss_pred -CCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCC
Q 005009 460 -WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (719)
Q Consensus 460 -~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~ 538 (719)
..++++|+++|+||++.|++.+. +. ..+||+...+|||.+..+.... ..
T Consensus 117 ~~~~~v~~~~g~~ea~~~a~~~~~-----~~----------------gd~Vi~~~~~y~~~~~~~~~~g-~~-------- 166 (421)
T 3l8a_A 117 VVKEDILFIDGVVPAISIALQAFS-----EK----------------GDAVLINSPVYYPFARTIRLND-HR-------- 166 (421)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS-----CT----------------EEEEEEEESCCHHHHHHHHHTT-EE--------
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhc-----CC----------------CCEEEECCCCcHHHHHHHHHCC-CE--------
Confidence 14689999999999999999871 11 2479999999999655433321 10
Q ss_pred CCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 005009 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (719)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~ 618 (719)
...+++. + .+ ..+ .-| .+.|++.+.+ .
T Consensus 167 --------------------~~~~~~~--~------------~~--~~~--~~d--------~~~le~~i~~-------~ 193 (421)
T 3l8a_A 167 --------------------LVENSLQ--I------------IN--GRF--EID--------FEQLEKDIID-------N 193 (421)
T ss_dssp --------------------EEEEECE--E------------ET--TEE--ECC--------HHHHHHHHHH-------T
T ss_pred --------------------EEecccc--c------------cC--CCe--eeC--------HHHHHHHhhc-------c
Confidence 0011110 0 00 000 001 3567777752 3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc----cc--cccCCCcceeeehhccC
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET----TA--DLLGCVPDIACYGKLLT 692 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~----a~--e~~gv~PDIvtlgK~Lg 692 (719)
++++|++++. ++.+| .+++++++++|+++|++||++||+||||++|+++|..+ .. +..+..+++.+++|++|
T Consensus 194 ~~~~vil~~p-~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g 271 (421)
T 3l8a_A 194 NVKIYLLCSP-HNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFN 271 (421)
T ss_dssp TEEEEEEESS-BTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHT
T ss_pred CCeEEEECCC-CCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhcc
Confidence 6889999997 99999 56678889999999999999999999999999999632 21 23466688999999998
Q ss_pred -CCccchheeEeC-HHHHhhhc
Q 005009 693 -GGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 693 -gG~~Plsavl~~-~~i~~~~~ 712 (719)
+| +|+|+++++ +++++.+.
T Consensus 272 ~~G-~~~G~~~~~~~~l~~~~~ 292 (421)
T 3l8a_A 272 IAG-TKNSFAIIQNESLRRKFQ 292 (421)
T ss_dssp CGG-GCCEEEECCSHHHHHHHH
T ss_pred Cch-hheEeEEcCCHHHHHHHH
Confidence 78 799999998 88887764
No 44
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.86 E-value=3.7e-21 Score=212.43 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=169.7
Q ss_pred EEE-eecCCceEEEeCCCCcccceeeeccccccccCCC-CCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHH
Q 005009 378 VID-SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (719)
Q Consensus 378 vi~-~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lG-H~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~ 451 (719)
++. +++|. +++| ||+ +||||.++ .++| |. ||+|.+|+.+++++++... .....++...+|+++
T Consensus 49 ~~~~~~~g~--~~~~-~g~----~~id~~~~---~~lg~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 117 (427)
T 2w8t_A 49 VMEQVKSPT--EAVI-RGK----DTILLGTY---NYMGMTF-DPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQA 117 (427)
T ss_dssp CCSEEEETT--EEEE-TTE----EEEECSCC---CTTCGGG-CHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHH
T ss_pred eccccCCCc--eEee-CCc----eEEEEECc---ccccCCC-CHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHH
Confidence 344 66665 7999 999 99999996 4689 68 9999999999998855321 111246788999999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
|+++.+ .+.+++++||++|++.|++.. ++ +.+.|.++..+|+++..++..++..
T Consensus 118 la~~~g---~~~~i~~~sGs~a~~~al~~l----~~------------------~gd~vl~~~~~h~~~~~~~~~~g~~- 171 (427)
T 2w8t_A 118 LRDFYG---TTGAIVFSTGYMANLGIISTL----AG------------------KGEYVILDADSHASIYDGCQQGNAE- 171 (427)
T ss_dssp HHHHHT---CSEEEEESCHHHHHHHHHHHH----SC------------------TTCEEEEETTCCHHHHHHHHHSCSE-
T ss_pred HHHHhC---CCceEEecCcHHHHHHHHHHh----cC------------------CCCEEEECCcccHHHHHHHHHcCCe-
Confidence 999986 468999999999999998876 11 2356677888999877666554311
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
.+.+| ++| .+.|++.+.+.
T Consensus 172 -----------------------------~~~~~--------------~~d------------------~~~le~~l~~~ 190 (427)
T 2w8t_A 172 -----------------------------IVRFR--------------HNS------------------VEDLDKRLGRL 190 (427)
T ss_dssp -----------------------------EEEEC--------------TTC------------------HHHHHHHHHTS
T ss_pred -----------------------------eEEeC--------------CCC------------------HHHHHHHHHhc
Confidence 11111 233 25677777641
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC--ccccCccccccccCCCcc----ee
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVPD----IA 685 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG--fGRtG~~~a~e~~gv~PD----Iv 685 (719)
...++++|++||+ ++..|.+.+ +++|+++|++||++||+||+|++ +|++|.. ..+++++.|| +.
T Consensus 191 ----~~~~~~~v~~~~~-~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~di~~~ 260 (427)
T 2w8t_A 191 ----PKEPAKLVVLEGV-YSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQIDFVVG 260 (427)
T ss_dssp ----CSSSCEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCSEEEE
T ss_pred ----cCCCCeEEEEcCC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCcEEEe
Confidence 1137899999998 999999887 99999999999999999999986 4556665 4567888877 67
Q ss_pred eehhccCCCccchheeEeCHHHHhhhcC
Q 005009 686 CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 686 tlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+++|.+| +|.|++++++++++.+..
T Consensus 261 s~sK~~g---~~gG~v~~~~~l~~~l~~ 285 (427)
T 2w8t_A 261 TFSKSVG---TVGGFVVSNHPKFEAVRL 285 (427)
T ss_dssp ESSSTTC---SCCEEEEECCTTGGGGGG
T ss_pred cchhhhc---cCCCEEEeCHHHHHHHHH
Confidence 9999996 466889999999887754
No 45
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.85 E-value=2.8e-20 Score=187.34 Aligned_cols=205 Identities=22% Similarity=0.276 Sum_probs=157.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC------CChHHHHHHhcCCCccccCCCcccc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH------DSDSRFLFTKLPSLSLRRNFPSSLI 111 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~------~~d~~~~~~~~~~~~~~~~~~~~~~ 111 (719)
++|+|+++.+|+|||++|+.|+.+|. ++|+||.++||++++... +.|..++.... +.
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la-----~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~-~~----------- 64 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAK-----AAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNS-SL----------- 64 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTC-SS-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCCEEEEcceecCCccCCCCcChHHHHHHHHHh-CC-----------
Confidence 47999999999999999999999994 789999999998876532 12222222111 00
Q ss_pred ccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCC
Q 005009 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGV 191 (719)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~ 191 (719)
. ......+++.+..|.+|+.++..+ +..
T Consensus 65 --------------------~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 92 (224)
T 1byi_A 65 --------------------Q-------------------------------LDYATVNPYTFAEPTSPHIISAQE-GRP 92 (224)
T ss_dssp --------------------C-------------------------------CCHHHHCSEEESSCSCHHHHHHHH-TCC
T ss_pred --------------------C-------------------------------CChhhcccEEeCCCCCHHHHHHHc-CCC
Confidence 0 000123456777889999887776 666
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHH
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (719)
...+.+.+.+.++.++ ||+|||||++|+.+|......++++++.++.|||+|+....++++++..++
T Consensus 93 ~~~~~l~~~l~~l~~~-------------yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i 159 (224)
T 1byi_A 93 IESLVMSAGLRALEQQ-------------ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA 159 (224)
T ss_dssp CCHHHHHHHHHHHHTT-------------CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------CCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHH
Confidence 7788888888877644 999999999999998766688999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEccCCCC--C----HHHHHHhhcCCCcEEe-cCCCC-CCCcchhhhhhh
Q 005009 272 ESLKLRGYDVVAVVFEDHGLV--N----EVPLMSYLRNRVPVLV-LPPLP-QDSSNDLMEWFD 326 (719)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~~~--~----~~~l~~~~~~~~pvlg-lP~~~-~~~~~~~~~~l~ 326 (719)
+.++..++++.|+|+|++... . .+.+++.+ ++|+++ ||+.+ ..+..++.++++
T Consensus 160 ~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~--~~~vl~~Ip~~~~~~~~~~~~~~~~ 220 (224)
T 1byi_A 160 QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMI--PAPLLGEIPWLAENPENAATGKYIN 220 (224)
T ss_dssp HHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHS--SSCEEEEECCCTTCTTCCCCGGGCC
T ss_pred HHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHc--CCCEEEECCCCcCCccHHHHHHHhc
Confidence 999989999999999998322 2 22344444 899999 99988 444446666664
No 46
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.82 E-value=1.8e-20 Score=205.02 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=165.3
Q ss_pred CCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHHHhccCCC
Q 005009 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (719)
Q Consensus 384 G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L~~~~~~~ 459 (719)
|.+++++|.+|+ +||||++ +.++|+..||+|++|+.+++++++... ......+...+++++|+++.+
T Consensus 48 ~~~~~~~~~~g~----~~ld~~s---~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-- 118 (409)
T 3kki_A 48 GKHLVLGKQASP----DDIILQS---NDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG-- 118 (409)
T ss_dssp SSCTTCCCCCCT----TSEECCC---SCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--
T ss_pred CCeeeeCCCCCC----ceEEeec---cCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--
Confidence 444567888999 9999988 567888559999999999998854321 111234566789999999887
Q ss_pred CCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCC
Q 005009 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (719)
Q Consensus 460 ~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~ 539 (719)
.+.+++++||++|++.|++.. .++.+.|.++..+|+.+..++..++..
T Consensus 119 -~~~~i~~~sGt~a~~~~l~~~----------------------~~~gd~Vl~~~~~~~~~~~~~~~~g~~--------- 166 (409)
T 3kki_A 119 -FDECLLSQSGWNANVGLLQTI----------------------CQPNTNVYIDFFAHMSLWEGARYANAQ--------- 166 (409)
T ss_dssp -CSEEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTSCHHHHHHHHHTTCE---------
T ss_pred -CCeEEEecchHHHHHHHHHHh----------------------cCCCCEEEECCCcCHHHHHHHHHcCCe---------
Confidence 457888999999999999876 122356778888998877766655321
Q ss_pred CccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 005009 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (719)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~ 619 (719)
.+++| .+| .+.+++.+.+ .+
T Consensus 167 ---------------------~~~~~--------------~~d------------------~~~le~~l~~-------~~ 186 (409)
T 3kki_A 167 ---------------------AHPFM--------------HNN------------------CDHLRMLIQR-------HG 186 (409)
T ss_dssp ---------------------EEEEC--------------TTC------------------HHHHHHHHHH-------HC
T ss_pred ---------------------EEEec--------------CCC------------------HHHHHHHHHh-------cC
Confidence 01111 122 2567777763 12
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC--ccccCccccccccCC--Ccce--eeehhccCC
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGC--VPDI--ACYGKLLTG 693 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG--fGRtG~~~a~e~~gv--~PDI--vtlgK~Lgg 693 (719)
.++|++|++ ++..|.+.+ +++|+++|++||++||+||+|++ +|++|..+. +.+++ .+|| .+++|++++
T Consensus 187 ~~~vi~~~~-~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~sK~~~~ 260 (409)
T 3kki_A 187 PGIIVVDSI-YSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKTFAY 260 (409)
T ss_dssp SCEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEESSSTTCS
T ss_pred CeEEEECCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeecchhhCC
Confidence 489999998 999998887 99999999999999999999998 999998766 56777 5777 589999987
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| .|++++++++++.+.
T Consensus 261 ~---gg~v~~~~~~~~~~~ 276 (409)
T 3kki_A 261 R---AGAIWCNNEVNRCVP 276 (409)
T ss_dssp S---CEEEEESSSGGGTHH
T ss_pred C---ceEEEECHHHHHHHH
Confidence 6 488999998887654
No 47
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.81 E-value=1e-19 Score=196.78 Aligned_cols=227 Identities=13% Similarity=0.106 Sum_probs=167.9
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCC-CCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHHH
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELL 452 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lG-H~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~L 452 (719)
++++++|. |++| +|+ +||||.++ +++| |+ +|++.+++.+++.++.+... .....+...++.++|
T Consensus 29 ~~~~~~g~--~v~~-~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 97 (399)
T 3tqx_A 29 IITSPQNA--EIKV-GEK----EVLNFCAN---NYLGLAD-HPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDI 97 (399)
T ss_dssp CBCSCSSS--EEEE-TTE----EEEECSSC---CTTSCTT-CHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHH
T ss_pred cccCCCCc--eEee-CCe----eEEEeecc---CcccccC-CHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHH
Confidence 45555555 7998 999 99999996 6789 78 99999999999988654321 112456688999999
Q ss_pred HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 453 ~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
++..+. +..++++||++|++.+++... ++.+.|.+...+|+.+..++...+..
T Consensus 98 a~~~~~---~~~i~~~sGt~a~~~~l~~~~----------------------~~gd~v~~~~~~~~~~~~~~~~~g~~-- 150 (399)
T 3tqx_A 98 SEFLGT---DDTILYSSCFDANGGLFETLL----------------------GPEDAIISDELNHASIIDGIRLCKAQ-- 150 (399)
T ss_dssp HHHHTC---SEEEEESCHHHHHHTTHHHHC----------------------CTTCEEEEETTCCHHHHHHHHSCCSE--
T ss_pred HHHHCC---CcEEEECchHHHHHHHHHHhc----------------------CCCCEEEECCcccHHHHHHHHHcCCc--
Confidence 998873 578888999999999987661 12356777888888776665554321
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
.+++| ++|. +.+++.+.+..
T Consensus 151 ----------------------------~~~~~--------------~~d~------------------~~l~~~l~~~~ 170 (399)
T 3tqx_A 151 ----------------------------RYRYK--------------NNAM------------------GDLEAKLKEAD 170 (399)
T ss_dssp ----------------------------EEEEC--------------TTCT------------------THHHHHHHHHH
T ss_pred ----------------------------eeEeC--------------CCCH------------------HHHHHHHHhhh
Confidence 01111 1221 23444444210
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc-cCc-cccCccccccccCC--Cccee--e
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGC--VPDIA--C 686 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq-TGf-GRtG~~~a~e~~gv--~PDIv--t 686 (719)
..+.++++|+++++ ++..|.+.+ +++|.++|++||+++|+||++ .|+ +++|+. ..+.+++ .||++ +
T Consensus 171 --~~~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~di~~~s 242 (399)
T 3tqx_A 171 --EKGARFKLIATDGV-FSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG-TPEYCGVADRVDILTGT 242 (399)
T ss_dssp --TTTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHHTCTTCCSEEEEE
T ss_pred --ccCCCceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHHhhCCCCCCcEEEec
Confidence 11237899999997 999999887 999999999999999999999 575 666664 5667787 89999 8
Q ss_pred ehhccCCCccchheeEeCHHHHhhhc
Q 005009 687 YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 687 lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|.++ | +|.|.+++++++++.+.
T Consensus 243 ~sK~~~-g-~~gG~~~~~~~~~~~~~ 266 (399)
T 3tqx_A 243 LGKALG-G-ASGGYTSGHKEIIEWLR 266 (399)
T ss_dssp SSSSSC-S-SCCEEEEECHHHHHHHH
T ss_pred chHhcc-c-CceEEEEcCHHHHHHHH
Confidence 999999 5 57888999999988764
No 48
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.80 E-value=1.9e-19 Score=195.59 Aligned_cols=229 Identities=13% Similarity=0.086 Sum_probs=164.5
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCCC-CCCHHHHHHHHHhhhhcccccCC-C---CCChHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVMFP-E---NVYEPALECAEL 451 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH-~~hP~V~~Av~~q~~~~~~~~~~-~---~~~~~~~~Lae~ 451 (719)
.++++++| +|++|.+|+ +|||+.++ +++|| . +|++.+|+.+++++++..... . ...+...+|.++
T Consensus 29 ~~~~~~~g--~~~~~~~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 98 (401)
T 1fc4_A 29 RIITSAQQ--ADITVADGS----HVINFCAN---NYLGLAN-HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQK 98 (401)
T ss_dssp CCBCSCSS--SEEEBTTSC----EEEECCCS---CTTSCTT-CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHH
T ss_pred eeeccCCC--ceEEeeCCc----cEEEeecc---CcccccC-CHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHH
Confidence 35556555 489999999 99999997 46997 7 999999999999876542110 0 115678899999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
|+++++. +..++++||++|++.|++.+. ++.+.|.+...+|+.+..++...|..
T Consensus 99 la~~~g~---~~~i~~~sGs~a~~~~~~~~~----------------------~~gd~v~~~~~~~~~~~~~~~~~g~~- 152 (401)
T 1fc4_A 99 LAAFLGM---EDAILYSSCFDANGGLFETLL----------------------GAEDAIISDALNHASIIDGVRLCKAK- 152 (401)
T ss_dssp HHHHHTC---SEEEEESCHHHHHHTTHHHHC----------------------CTTCEEEEETTCCHHHHHHHHTSCSE-
T ss_pred HHHHhCC---CcEEEeCChHHHHHHHHHHHc----------------------CCCCEEEEcchhHHHHHHHHHHcCCc-
Confidence 9999873 477888999999999888761 12356777888888766554433210
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
.+.+| ..| .+.+++.+.+.
T Consensus 153 -----------------------------~~~~~--------------~~d------------------~~~l~~~l~~~ 171 (401)
T 1fc4_A 153 -----------------------------RYRYA--------------NND------------------MQELEARLKEA 171 (401)
T ss_dssp -----------------------------EEEEC--------------TTC------------------HHHHHHHHHHH
T ss_pred -----------------------------eEEEC--------------CCC------------------HHHHHHHHHHh
Confidence 11111 111 13455555421
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc-cCc-cccCccccccccCCCc--cee--
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGCVP--DIA-- 685 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq-TGf-GRtG~~~a~e~~gv~P--DIv-- 685 (719)
. ..+.++++|++++. ++..|.+.+ +++|.++|++||+++|+||++ +|+ +++|+.+ .+.+++.| |++
T Consensus 172 ~--~~~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~di~~~ 243 (401)
T 1fc4_A 172 R--EAGARHVLIATDGV-FSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVMGRVDIITG 243 (401)
T ss_dssp H--HTTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCTTCCSEEEE
T ss_pred h--ccCCCceEEEEeCC-cCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCCcCCcEEEe
Confidence 0 01126789999997 899998887 999999999999999999999 588 5778764 44566654 887
Q ss_pred eehhccCCCccchheeEeCHHHHhhhc
Q 005009 686 CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 686 tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++|.++|+. .|++++++++++.+.
T Consensus 244 s~sK~~~~~~--gG~~~~~~~~~~~l~ 268 (401)
T 1fc4_A 244 TLGKALGGAS--GGYTAARKEVVEWLR 268 (401)
T ss_dssp ESSSTTCSSS--CEEEEECHHHHHHHH
T ss_pred cchhhccCCC--CEEEEcCHHHHHHHH
Confidence 8999997763 588999999988764
No 49
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.77 E-value=5.2e-18 Score=183.20 Aligned_cols=225 Identities=16% Similarity=0.110 Sum_probs=165.9
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCC-CCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHH
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVM----FPENVYEPALECAE 450 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lG-H~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae 450 (719)
|.++.+++|. +++ .+|+ +|||+.++ .++| |. +|++.+|+.++++.+.... ......+...+|.+
T Consensus 23 ~~~~~~~~g~--~~~-~~g~----~~id~~~~---~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 91 (384)
T 1bs0_A 23 RYPVAQGAGR--WLV-ADDR----QYLNFSSN---DYLGLSH-HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEE 91 (384)
T ss_dssp CCCCSBCSSS--EEE-ETTE----EEEECSCC---CTTSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHH
T ss_pred cccccCCCCc--eEE-ECCc----eEEEeecc---CccCCCC-CHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHH
Confidence 3456666665 677 6888 99999986 3489 58 9999999999998754311 11124577889999
Q ss_pred HHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC
Q 005009 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (719)
Q Consensus 451 ~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~ 530 (719)
+|+++++ .+.+++++||++|++.+++.. .++.++|.+...+|+.+..++...|..
T Consensus 92 ~la~~~g---~~~~i~~~sGt~a~~~~~~~~----------------------~~~gd~v~~~~~~~~~~~~~~~~~g~~ 146 (384)
T 1bs0_A 92 ELAEWLG---YSRALLFISGFAANQAVIAAM----------------------MAKEDRIAADRLSHASLLEAASLSPSQ 146 (384)
T ss_dssp HHHHHHT---CSEEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTCCHHHHHHHHTSSSE
T ss_pred HHHHHhC---CCcEEEeCCcHHHHHHHHHHh----------------------CCCCcEEEEcccccHHHHHHHHHcCCC
Confidence 9999987 457899999999999999876 112356788889999877666554311
Q ss_pred CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 005009 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (719)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (719)
.+.+| +.| .+.+++.+.+
T Consensus 147 ------------------------------~~~~~--------------~~d------------------~~~l~~~l~~ 164 (384)
T 1bs0_A 147 ------------------------------LRRFA--------------HND------------------VTHLARLLAS 164 (384)
T ss_dssp ------------------------------EEEEC--------------TTC------------------HHHHHHHHHS
T ss_pred ------------------------------EEEeC--------------CCC------------------HHHHHHHHHh
Confidence 01111 111 2456777763
Q ss_pred CCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-Cc-cccCccccccccCCCccee--e
Q 005009 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCVPDIA--C 686 (719)
Q Consensus 611 ~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-Gf-GRtG~~~a~e~~gv~PDIv--t 686 (719)
...+.++|++++. ++..|.+.+ +++|.++|++||+++|+||++. |+ +++|..+. +.++..||++ +
T Consensus 165 -----~~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~di~~~s 233 (384)
T 1bs0_A 165 -----PCPGQQMVVTEGV-FSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVT 233 (384)
T ss_dssp -----CCSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHH-HHTTCCCSEEEEE
T ss_pred -----cCCCCeEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCchH-HhcCCCCcEEEee
Confidence 2224689999987 899999887 8999999999999999999994 64 66777544 5677789998 8
Q ss_pred ehhccCCCccchheeEeCHHHHhhhc
Q 005009 687 YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 687 lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|.+|. |.|++++++++++.+.
T Consensus 234 ~sK~~~~---~GG~~~~~~~~~~~l~ 256 (384)
T 1bs0_A 234 FGKGFGV---SGAAVLCSSTVADYLL 256 (384)
T ss_dssp SSSTTSS---CCEEEEECHHHHHHHH
T ss_pred ccchhhc---cCcEEEeCHHHHHHHH
Confidence 9999973 4477999999887664
No 50
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.74 E-value=1.7e-17 Score=178.78 Aligned_cols=234 Identities=10% Similarity=-0.008 Sum_probs=162.3
Q ss_pred cCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC--CCC
Q 005009 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KGW 460 (719)
Q Consensus 383 ~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~--~~~ 460 (719)
+|.|+++||.+|+ +||||..| .+..+. +|+|.+|+.+++++..+... ....+...++++.|.+..+ -.
T Consensus 15 ~~~g~~~~d~~g~----~~i~~~~~---~~~~~~-~~~v~~a~~~~~~~~~~~y~-~~~~~l~~~la~~l~~~~g~~~~- 84 (391)
T 3dzz_A 15 RQGNSIKWGVLKE----KELPMWIA---EMDFKI-APEIMASMEEKLKVAAFGYE-SVPAEYYKAVADWEEIEHRARPK- 84 (391)
T ss_dssp CCTTBTTTTTCCT----TCEECCSS---CCSSCC-CHHHHHHHHHHHTTCCCCCB-CCCHHHHHHHHHHHHHHHSCCCC-
T ss_pred CCCCccceeccCC----Cceecccc---CCCCCC-CHHHHHHHHHHHhcCcCCCC-CCCHHHHHHHHHHHHHHhCCCCC-
Confidence 4555689999999 99999976 344457 99999999999987433221 1234556677778777554 11
Q ss_pred CCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCC
Q 005009 461 ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540 (719)
Q Consensus 461 ~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~ 540 (719)
.+.++|+++|++|++.+++... +. ..+|++...+||+....+.. .|..
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~-----~~----------------gd~vl~~~~~~~~~~~~~~~-~g~~---------- 132 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFT-----SP----------------GDQILVQEPVYNMFYSVIEG-NGRR---------- 132 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHS-----CT----------------TCEEEECSSCCHHHHHHHHH-TTCE----------
T ss_pred HHHEEECCCHHHHHHHHHHHhC-----CC----------------CCeEEECCCCcHHHHHHHHH-cCCE----------
Confidence 3689999999999999999871 11 24799999999985443322 2110
Q ss_pred ccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE
Q 005009 541 YSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI 620 (719)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~i 620 (719)
.+.+|..+ .+ ..+ .-| .+.+++.+.+ .++
T Consensus 133 --------------------~~~~~~~~------------~~--~~~--~~d--------~~~l~~~l~~-------~~~ 161 (391)
T 3dzz_A 133 --------------------VISSDLIY------------EN--SKY--SVN--------WADLEEKLAT-------PSV 161 (391)
T ss_dssp --------------------EEECCCEE------------ET--TEE--ECC--------HHHHHHHHTS-------TTE
T ss_pred --------------------EEEeeeee------------cC--Cce--eec--------HHHHHHHHhc-------cCc
Confidence 01111000 00 000 001 3567777752 356
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCC-Ccc----eeeehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGC-VPD----IACYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv-~PD----IvtlgK~Lg-g 693 (719)
.+|+++.. ++..|.+. |.+.+++|.++|++||+++|+||++++|++.|+ +.....++. .|| +.+++|.+| +
T Consensus 162 ~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~ 239 (391)
T 3dzz_A 162 RMMVFCNP-HNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLA 239 (391)
T ss_dssp EEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCT
T ss_pred eEEEEECC-CCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhcccc
Confidence 77777775 88888765 577799999999999999999999999999886 444545443 388 557999998 7
Q ss_pred CccchheeEeC-HHHHhhhc
Q 005009 694 GVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~-~~i~~~~~ 712 (719)
| +++|+++++ +++++.+.
T Consensus 240 G-~r~G~~~~~~~~~~~~~~ 258 (391)
T 3dzz_A 240 A-LHAACAIIPNPDLRARAE 258 (391)
T ss_dssp T-TCCEEEECCSHHHHHHHH
T ss_pred c-hhheEEEECCHHHHHHHH
Confidence 8 799999997 88887663
No 51
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.74 E-value=1.6e-17 Score=180.54 Aligned_cols=225 Identities=14% Similarity=0.116 Sum_probs=163.9
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCC-CCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHH
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVM----FPENVYEPALECAE 450 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH-~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae 450 (719)
|.++++++|. +++ .+|+ .||||.+|. ++|| . +|++.+|+.++++...+.. ......+...++++
T Consensus 27 ~~~~~~~~g~--~~~-~~g~----~~idl~~~~---~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 95 (398)
T 3a2b_A 27 FRPIQSKQDT--EVK-IDGR----RVLMFGSNS---YLGLTT-DTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEE 95 (398)
T ss_dssp SCCBCSCSSS--EEE-ETTE----EEEECSCSC---TTCGGG-CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHH
T ss_pred eeeecCCCCc--eEE-ECCc----eEEEeeccc---ccCCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHH
Confidence 3456676665 688 8898 999999863 3799 6 9999999999987754311 11234577889999
Q ss_pred HHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC
Q 005009 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (719)
Q Consensus 451 ~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~ 530 (719)
+|++..+ .+.++++++|++|++.+++.+. ++.+.|.+...+|+.+..++...|..
T Consensus 96 ~la~~~g---~~~v~~~~ggt~a~~~~~~~~~----------------------~~gd~V~~~~p~~~~~~~~~~~~g~~ 150 (398)
T 3a2b_A 96 KLSAYVG---KEAAILFSTGFQSNLGPLSCLM----------------------GRNDYILLDERDHASIIDGSRLSFSK 150 (398)
T ss_dssp HHHHHHT---CSEEEEESSHHHHHHHHHHHSS----------------------CTTCEEEEETTCCHHHHHHHHHSSSE
T ss_pred HHHHHhC---CCcEEEECCHHHHHHHHHHHHh----------------------CCCCEEEECCccCHHHHHHHHHcCCc
Confidence 9999887 3689999999999999998771 12356777788888776665544321
Q ss_pred CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 005009 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (719)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (719)
.+.+| ..| .+.+++.+.+
T Consensus 151 ------------------------------~~~v~--------------~~d------------------~~~l~~~l~~ 168 (398)
T 3a2b_A 151 ------------------------------VIKYG--------------HNN------------------MEDLRAKLSR 168 (398)
T ss_dssp ------------------------------EEEEC--------------TTC------------------HHHHHHHHHT
T ss_pred ------------------------------eEEeC--------------CCC------------------HHHHHHHHHh
Confidence 11111 111 2457777764
Q ss_pred CCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCCC--ccee-
Q 005009 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCV--PDIA- 685 (719)
Q Consensus 611 ~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv~--PDIv- 685 (719)
. ..+++++|+++++ ++..|.+.+ +++|.++|++||+++|+||++. | +|++|..+ .+.+++. +|++
T Consensus 169 ~----~~~~~~~v~~~~~-~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~di~~ 238 (398)
T 3a2b_A 169 L----PEDSAKLICTDGI-FSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLNDDVDLIM 238 (398)
T ss_dssp S----CSSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGGGCSEEE
T ss_pred h----ccCCceEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCcCCeEEE
Confidence 1 1126889999998 898898876 9999999999999999999995 4 56666644 4556664 6898
Q ss_pred -eehhccCC-CccchheeEeCHHHHhhhc
Q 005009 686 -CYGKLLTG-GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 686 -tlgK~Lgg-G~~Plsavl~~~~i~~~~~ 712 (719)
+++|.++. | |.+++++++++.+.
T Consensus 239 ~s~sK~~~~~G----G~~~~~~~~~~~l~ 263 (398)
T 3a2b_A 239 GTFSKSLASLG----GFVAGDADVIDFLK 263 (398)
T ss_dssp EESSSTTCSSC----EEEEECHHHHHHHH
T ss_pred ecccccccCCC----cEEEeCHHHHHHHH
Confidence 89999983 2 55889999887664
No 52
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.71 E-value=5.2e-17 Score=174.44 Aligned_cols=229 Identities=12% Similarity=0.048 Sum_probs=155.4
Q ss_pred cCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CC
Q 005009 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WA 461 (719)
Q Consensus 383 ~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~ 461 (719)
+|.|+++||.+|+ +||||.+|. ..+ .. +|+|.+|+.+++....+.... ...+....+++.+.+..+.. ..
T Consensus 11 ~~~g~~~~d~~g~----~~idl~~~~--~~~-~~-~~~v~~a~~~~~~~~~~~y~~-~~~~lr~~la~~~~~~~~~~~~~ 81 (377)
T 3fdb_A 11 RARNTMKWTRYGQ----GVLPLWVAE--SDF-ST-CPAVLQAITDAVQREAFGYQP-DGSLLSQATAEFYADRYGYQARP 81 (377)
T ss_dssp HHTCCHHHHSSCT----TSEECCSSC--CCS-CC-CHHHHHHHHHHHHTTCCSSCC-SSCCHHHHHHHHHHHHHCCCCCG
T ss_pred cCCCCceeeccCC----CeeeecccC--CCC-CC-CHHHHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHHHHHhCCCCCH
Confidence 4555689999999 999998863 334 47 999999999999863222111 22556667777776543211 13
Q ss_pred CeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCc
Q 005009 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY 541 (719)
Q Consensus 462 ~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~ 541 (719)
++++|+++|++|++.+++... +. ..+|+....+||+....+... |..
T Consensus 82 ~~i~~t~g~~~a~~~~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~~~~~-g~~----------- 128 (377)
T 3fdb_A 82 EWIFPIPDVVRGLYIAIDHFT-----PA----------------QSKVIVPTPAYPPFFHLLSAT-QRE----------- 128 (377)
T ss_dssp GGEEEESCHHHHHHHHHHHHS-----CT----------------TCCEEEEESCCTHHHHHHHHH-TCC-----------
T ss_pred HHEEEeCChHHHHHHHHHHhc-----CC----------------CCEEEEcCCCcHhHHHHHHHc-CCE-----------
Confidence 689999999999999999771 11 247999999999855432221 110
Q ss_pred cCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 005009 542 SGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (719)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iA 621 (719)
...++.+.. .| .+.+++.+.+ ...+
T Consensus 129 -----------------~~~~~~~~~-------------~d------------------~~~l~~~l~~-------~~~~ 153 (377)
T 3fdb_A 129 -----------------GIFIDATGG-------------IN------------------LHDVEKGFQA-------GARS 153 (377)
T ss_dssp -----------------EEEEECTTS-------------CC------------------HHHHHHHHHT-------TCCE
T ss_pred -----------------EEEccCCCC-------------CC------------------HHHHHHHhcc-------CCCE
Confidence 001111100 01 3567777763 2335
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC-----ccccccccCCCcceeeehhccC-CCc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-----VETTADLLGCVPDIACYGKLLT-GGV 695 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG-----~~~a~e~~gv~PDIvtlgK~Lg-gG~ 695 (719)
.++..| +...|.+. |.+.+++|.++|++||+++|+||++++|+++| .++..+..+...++.+++|.+| +|
T Consensus 154 v~i~~p--~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G- 229 (377)
T 3fdb_A 154 ILLCNP--YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAG- 229 (377)
T ss_dssp EEEESS--BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGG-
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcc-
Confidence 555556 67778755 67789999999999999999999999999888 2333333445567779999996 67
Q ss_pred cchheeEe-CHHHHhhhc
Q 005009 696 IPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~-~~~i~~~~~ 712 (719)
+++|++++ ++++++.+.
T Consensus 230 ~r~G~~~~~~~~~~~~~~ 247 (377)
T 3fdb_A 230 LKCAQIIFSNPSDAEHWQ 247 (377)
T ss_dssp GCCEEEECCSHHHHHHHH
T ss_pred hhheEEEeCCHHHHHHHH
Confidence 79996665 788887764
No 53
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.69 E-value=2.5e-16 Score=169.16 Aligned_cols=234 Identities=9% Similarity=-0.022 Sum_probs=153.2
Q ss_pred cCCceEEEeCC-CCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-C
Q 005009 383 CGENFSVYQDQ-KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-W 460 (719)
Q Consensus 383 ~G~g~~l~D~d-G~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~ 460 (719)
+|.|+++||.+ |+ ++|||.+|. +-.+. +|+|.+|+.+++++..+.. .....+...++++.|.+..+.. .
T Consensus 11 ~~~g~~~~d~~~~~----~~i~l~~~~---~~~~~-~~~v~~a~~~~~~~~~~~y-~~~~~~~~~~l~~~l~~~~g~~~~ 81 (383)
T 3kax_A 11 RGTHSIKWDTYKNE----ELIHAWIAD---MDFEV-PQPIQTALKKRIEHPIFGY-TLPPENIGDIICNWTKKQYNWDIQ 81 (383)
T ss_dssp --------CCCSSS----CCEECCCSS---CSSCC-CHHHHHHHHHHHHSCCCCC-CCCCTTHHHHHHHHHHHHHCCCCC
T ss_pred cCCCceeeeccCCC----Ceeeccccc---CCCCC-CHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHhCCCCC
Confidence 35556899955 46 899999863 33347 9999999999998633221 1225677888999998876511 1
Q ss_pred CCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCC
Q 005009 461 ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540 (719)
Q Consensus 461 ~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~ 540 (719)
.+.++|+++|++|++.+++.+. .. ..+|++...+||+....+.. .|..
T Consensus 82 ~~~v~~~~g~~~a~~~~~~~l~-----~~----------------gd~vl~~~~~~~~~~~~~~~-~g~~---------- 129 (383)
T 3kax_A 82 KEWIVFSAGIVPALSTSIQAFT-----KE----------------NESVLVQPPIYPPFFEMVTT-NNRQ---------- 129 (383)
T ss_dssp GGGEEEESCHHHHHHHHHHHHC-----CT----------------TCEEEECSSCCHHHHHHHHH-TTCE----------
T ss_pred hhhEEEcCCHHHHHHHHHHHhC-----CC----------------CCEEEEcCCCcHHHHHHHHH-cCCE----------
Confidence 3689999999999999999871 11 24799999999986543322 1110
Q ss_pred ccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE
Q 005009 541 YSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI 620 (719)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~i 620 (719)
.+.+|... .+ ..| .-| .+.+++.+. .++
T Consensus 130 --------------------~~~~~~~~------------~~--~~~--~~d--------~~~l~~~l~--------~~~ 157 (383)
T 3kax_A 130 --------------------LCVSPLQK------------QN--DTY--AID--------FEHLEKQFQ--------QGV 157 (383)
T ss_dssp --------------------EEECCCEE------------ET--TEE--ECC--------HHHHHHHHT--------TTC
T ss_pred --------------------EEecccee------------cC--CcE--EEc--------HHHHHHHhC--------cCC
Confidence 01111000 00 000 001 256777773 244
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccc-----cCCCcceeeehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL-----LGCVPDIACYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~-----~gv~PDIvtlgK~Lg-g 693 (719)
.+|+++.. +...|.+. |.+.+++|.++|++||+++|+||++++|+++|+.+ .... .+..+++.+++|.+| +
T Consensus 158 ~~v~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 235 (383)
T 3kax_A 158 KLMLLCSP-HNPIGRVW-KKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIA 235 (383)
T ss_dssp CEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCG
T ss_pred eEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCc
Confidence 56666665 78888755 78889999999999999999999999999988632 1111 344566778999999 7
Q ss_pred CccchheeEe-CHHHHhhhc
Q 005009 694 GVIPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~-~~~i~~~~~ 712 (719)
| +++|++++ ++++++.+.
T Consensus 236 G-~r~G~~~~~~~~~~~~~~ 254 (383)
T 3kax_A 236 G-LQASIIIIPNEKLRQAFT 254 (383)
T ss_dssp G-GCCEEEECCCHHHHHHHH
T ss_pred c-hhheEEEeCCHHHHHHHH
Confidence 8 79999998 688877654
No 54
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=99.67 E-value=1.5e-16 Score=171.18 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=74.9
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCC-EEEEEcCCCChH-----------HHHHHHHHHHHh-----CCCcEE
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGI-----------SGTISAYESLKL-----RGYDVV 282 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i-----------~~~~~~~~~l~~-----~~~~v~ 282 (719)
++|++||||+||++.|+ ++.+ ++|++.++.| +|||.+.++|++ ++++.+++.++. .+++|+
T Consensus 225 ~~d~vlVEGqGgl~~P~-~~~t-~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~ 302 (349)
T 2obn_A 225 NYDILHIEGQGSLLHPG-STAT-LPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVV 302 (349)
T ss_dssp TCSEEEECCCCCTTSTT-CCTH-HHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEE
T ss_pred CCCEEEEeCCCcccCcC-hHhH-HHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEE
Confidence 49999999999999999 6555 8999999988 889999999999 999999999976 789999
Q ss_pred EEEEccCCC------CCHHHHHHhhcCCCcEEe-c
Q 005009 283 AVVFEDHGL------VNEVPLMSYLRNRVPVLV-L 310 (719)
Q Consensus 283 gvi~N~~~~------~~~~~l~~~~~~~~pvlg-l 310 (719)
||++|.... ++.+.+++.+ ++||++ +
T Consensus 303 Gi~lN~~~~~~~~~~~~~~~ie~~~--glPv~d~~ 335 (349)
T 2obn_A 303 GIALNTAHLDEYAAKEAIAHTIAET--GLPCTDVV 335 (349)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHH--CSCEECHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEe
Confidence 999999832 3455566666 999998 5
No 55
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.65 E-value=3.4e-16 Score=168.60 Aligned_cols=237 Identities=10% Similarity=0.020 Sum_probs=157.9
Q ss_pred ecCCceEEEeCCCCccc-ceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC--C
Q 005009 382 RCGENFSVYQDQKNKFI-GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--K 458 (719)
Q Consensus 382 ~~G~g~~l~D~dG~~~~-~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~--~ 458 (719)
.+|.|+++||.+|+.++ ..+||+.++ .+-.+. +|+|.+|+.++++...+.. .....+...++++.|++..+ -
T Consensus 14 ~~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~y-~~~~~~~~~~l~~~l~~~~g~~~ 88 (391)
T 4dq6_A 14 RSNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKA-APCIIDSLKNRLEQEIYGY-TTRPDSYNESIVNWLYRRHNWKI 88 (391)
T ss_dssp CTTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCC-CHHHHHHHHHHHTTCCCCC-BCCCHHHHHHHHHHHHHHHCCCC
T ss_pred cccCCceeeeecccccCCCCceecccc---CCCCCC-CHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHHhCCCC
Confidence 35667789999986110 134898875 344566 8999999999998643322 12345677788888888765 2
Q ss_pred CCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCC
Q 005009 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (719)
Q Consensus 459 ~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~ 538 (719)
. .++++|+++|++|++.+++.+. +. ..+|++...+||+....+... |..
T Consensus 89 ~-~~~v~~~~g~~~a~~~~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~~~~~-g~~-------- 137 (391)
T 4dq6_A 89 K-SEWLIYSPGVIPAISLLINELT-----KA----------------NDKIMIQEPVYSPFNSVVKNN-NRE-------- 137 (391)
T ss_dssp C-GGGEEEESCHHHHHHHHHHHHS-----CT----------------TCEEEECSSCCTHHHHHHHHT-TCE--------
T ss_pred c-HHHeEEcCChHHHHHHHHHHhC-----CC----------------CCEEEEcCCCCHHHHHHHHHc-CCe--------
Confidence 2 4689999999999999999871 11 247999999999855433221 110
Q ss_pred CCccCCCcccCCCcccccCcceeecCcch-hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 005009 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (719)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~~~~~~~P~~-~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 617 (719)
.+.+|.. +. -++ + .-| .+.+++.+. .
T Consensus 138 ----------------------~~~~~~~~~~----------~~~----~--~~d--------~~~l~~~l~-------~ 164 (391)
T 4dq6_A 138 ----------------------LIISPLQKLE----------NGN----Y--IMD--------YEDIENKIK-------D 164 (391)
T ss_dssp ----------------------EEECCCEECT----------TSC----E--ECC--------HHHHHHHCT-------T
T ss_pred ----------------------EEeeeeeecC----------CCc----e--Eee--------HHHHHHHhh-------c
Confidence 0111100 00 000 0 001 255666664 2
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-ccccc-----CCCcceeeehhcc
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-----GCVPDIACYGKLL 691 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~-----gv~PDIvtlgK~L 691 (719)
+.+|+++.. +...|.+. |.+.+++|.++|++||++||+||++++|+++|+.+ ....+ +....+.+++|.+
T Consensus 165 --~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~ 240 (391)
T 4dq6_A 165 --VKLFILCNP-HNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTF 240 (391)
T ss_dssp --EEEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHH
T ss_pred --CCEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhc
Confidence 667777765 78888755 67779999999999999999999999998888632 22222 2223355899999
Q ss_pred C-CCccchheeEeCH-HHHhhhc
Q 005009 692 T-GGVIPLAATLATN-AVFDSFV 712 (719)
Q Consensus 692 g-gG~~Plsavl~~~-~i~~~~~ 712 (719)
| +| +++|++++++ ++++.+.
T Consensus 241 g~~G-~r~G~~~~~~~~~~~~~~ 262 (391)
T 4dq6_A 241 NIAG-LQSSYVVLPDEKDYKLLD 262 (391)
T ss_dssp TCGG-GCCEEEECCSHHHHHHHH
T ss_pred cCcc-cceEEEEeCCHHHHHHHH
Confidence 8 78 7999999886 7777653
No 56
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.65 E-value=6.9e-16 Score=167.40 Aligned_cols=238 Identities=9% Similarity=-0.053 Sum_probs=153.5
Q ss_pred cCCceEEEeCCCCccc---ceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC--
Q 005009 383 CGENFSVYQDQKNKFI---GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG-- 457 (719)
Q Consensus 383 ~G~g~~l~D~dG~~~~---~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~-- 457 (719)
+|.|+++||.+|+.++ +.++||.++. ..++ . +|+|.+|+.++++...... .....+....+++.+.+..+
T Consensus 12 ~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~la~~l~~~~g~~ 86 (399)
T 1c7n_A 12 KNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-N-PPELIEGLKKYLDETVLGY-TGPTEEYKKTVKKWMKDRHQWD 86 (399)
T ss_dssp TTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-C-CHHHHHHHHHHHHHCCCSS-BCCCHHHHHHHHHHHHHHHCCC
T ss_pred cCCCccccccchhhccccCCCceeeeecC--CCCC-C-CHHHHHHHHHHHhcCCCCC-CCCcHHHHHHHHHHHHHHhCCC
Confidence 4666789999984222 2789997754 3355 4 8999999999987532211 11133444455555544333
Q ss_pred CCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCC
Q 005009 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (719)
Q Consensus 458 ~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~ 537 (719)
.+ .+.++|+++|++|++.+++... .. ..+|++...+|||....+.. .|..
T Consensus 87 ~~-~~~v~~t~g~~~a~~~~~~~l~-----~~----------------gd~vl~~~p~~~~~~~~~~~-~g~~------- 136 (399)
T 1c7n_A 87 IQ-TDWIINTAGVVPAVFNAVREFT-----KP----------------GDGVIIITPVYYPFFMAIKN-QERK------- 136 (399)
T ss_dssp CC-GGGEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEECSSCCTHHHHHHHT-TTCE-------
T ss_pred CC-hhhEEEcCCHHHHHHHHHHHhc-----CC----------------CCEEEEcCCCcHhHHHHHHH-cCCE-------
Confidence 11 3689999999999999999761 11 24799999999996544322 1110
Q ss_pred CCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 005009 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (719)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 617 (719)
.+.+|... .+ ..| ..| .+.+++.+.+
T Consensus 137 -----------------------~~~~~~~~------------~~--g~~--~~d--------~~~l~~~l~~------- 162 (399)
T 1c7n_A 137 -----------------------IIECELLE------------KD--GYY--TID--------FQKLEKLSKD------- 162 (399)
T ss_dssp -----------------------EEECCCEE------------ET--TEE--ECC--------HHHHHHHHTC-------
T ss_pred -----------------------EEeccccc------------CC--CCE--EEc--------HHHHHHHhcc-------
Confidence 01111000 00 000 001 3567777752
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-ccccccc-----CCCcceeeehhcc
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-----GCVPDIACYGKLL 691 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~-----gv~PDIvtlgK~L 691 (719)
.++.+|++... +...|.+ .|++++++|.++|++||++||+||++++|++.|. ......+ +...++.+++|.+
T Consensus 163 ~~~~~v~~~~~-~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~ 240 (399)
T 1c7n_A 163 KNNKALLFCSP-HNPVGRV-WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF 240 (399)
T ss_dssp TTEEEEEEESS-BTTTTBC-CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH
T ss_pred CCCcEEEEcCC-CCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhc
Confidence 35667777654 7777875 4788999999999999999999999999988875 2233222 3334456899999
Q ss_pred C-CCccchheeEeC-HHHHhhhc
Q 005009 692 T-GGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 692 g-gG~~Plsavl~~-~~i~~~~~ 712 (719)
| +| +++|+++++ +++++.+.
T Consensus 241 ~~~G-~r~G~~~~~~~~~~~~l~ 262 (399)
T 1c7n_A 241 NIAG-MGMSNIIIKNPDIRERFT 262 (399)
T ss_dssp TCGG-GCCEEEECCCHHHHHHHH
T ss_pred cccc-hheEEEEECCHHHHHHHH
Confidence 8 78 799999997 66877653
No 57
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.64 E-value=2.9e-15 Score=162.11 Aligned_cols=237 Identities=9% Similarity=-0.010 Sum_probs=142.2
Q ss_pred ecCCceEEEeCCCCcc-cceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCCh-HHHHHHHHHHhccC--
Q 005009 382 RCGENFSVYQDQKNKF-IGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-PALECAELLLQGVG-- 457 (719)
Q Consensus 382 ~~G~g~~l~D~dG~~~-~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~-~~~~Lae~L~~~~~-- 457 (719)
.+|.|+++||.+|+.+ .+++|||.++. ..+| . +|+|.+|+.++++...... .....+ ...++++.+.+..+
T Consensus 10 ~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~~y-~~~~~~~lr~~la~~l~~~~g~~ 84 (390)
T 1d2f_A 10 RHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-T-APCIIEALNQRLMHGVFGY-SRWKNDEFLAAIAHWFSTQHYTA 84 (390)
T ss_dssp --------------------CEECCSSS--CSSC-C-CHHHHHHHHHHHTTCCCCC-CCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCCCccchhhhccccCCCCeeEeeecC--CCCC-C-CHHHHHHHHHHHhCCCCCC-CCCChHHHHHHHHHHHHHhcCCC
Confidence 3566778999999621 12589997654 3567 5 8999999999987532211 112344 55666666655433
Q ss_pred CCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCC
Q 005009 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (719)
Q Consensus 458 ~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~ 537 (719)
.. .+.++|+++|++|++.+++... .. ..+|++...+|||....+.. .|..
T Consensus 85 ~~-~~~v~~t~g~~~al~~~~~~l~-----~~----------------gd~vl~~~p~y~~~~~~~~~-~g~~------- 134 (390)
T 1d2f_A 85 ID-SQTVVYGPSVIYMVSELIRQWS-----ET----------------GEGVVIHTPAYDAFYKAIEG-NQRT------- 134 (390)
T ss_dssp CC-GGGEEEESCHHHHHHHHHHHSS-----CT----------------TCEEEEEESCCHHHHHHHHH-TTCE-------
T ss_pred CC-HHHEEEcCCHHHHHHHHHHHhc-----CC----------------CCEEEEcCCCcHHHHHHHHH-CCCE-------
Confidence 11 3689999999999999999761 11 24799999999996544322 1110
Q ss_pred CCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 005009 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (719)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 617 (719)
...++... .+ ..| ..| .+.+++.+.+
T Consensus 135 ---------------------~~~v~~~~--------------~~--~~~--~~d--------~~~l~~~l~~------- 160 (390)
T 1d2f_A 135 ---------------------VMPVALEK--------------QA--DGW--FCD--------MGKLEAVLAK------- 160 (390)
T ss_dssp ---------------------EEEEECEE--------------CS--SSE--ECC--------HHHHHHHHTS-------
T ss_pred ---------------------EEEeeccc--------------CC--Ccc--ccC--------HHHHHHHhcc-------
Confidence 00111100 00 000 001 2567777752
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCc---c-eeeehhccC-
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP---D-IACYGKLLT- 692 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~P---D-IvtlgK~Lg- 692 (719)
.++.+|++... +...|.+. |.+++++|.++|++||+++|+||++++|+++|+.+.. ...+.+ | +.+++|.+|
T Consensus 161 ~~~~~v~l~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~d~~~s~sK~~~~ 237 (390)
T 1d2f_A 161 PECKIMLLCSP-QNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWALLTSGSKSFNI 237 (390)
T ss_dssp TTEEEEEEESS-CTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEEEECSHHHHTC
T ss_pred CCCeEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcC-HHHcchhhHhhccCccHhhcc
Confidence 25666665443 67778764 6789999999999999999999999999888864321 112222 3 889999998
Q ss_pred CCccchheeEeC-HHHHhhh
Q 005009 693 GGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 693 gG~~Plsavl~~-~~i~~~~ 711 (719)
+| +++|+++++ +++++.+
T Consensus 238 ~G-~r~G~~~~~~~~~~~~~ 256 (390)
T 1d2f_A 238 PA-LTGAYGIIENSSSRDAY 256 (390)
T ss_dssp GG-GCCEEEEECSHHHHHHH
T ss_pred cC-hhheEEEECCHHHHHHH
Confidence 88 799999985 7777655
No 58
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.64 E-value=2.6e-15 Score=164.85 Aligned_cols=228 Identities=13% Similarity=0.085 Sum_probs=149.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc--ccCC--CCCChHHHHHHHHHHhccCCC-CCC-eEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFP--ENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~--~~~~--~~~~~~~~~Lae~L~~~~~~~-~~~-rv~f~~SGsEA 473 (719)
.+|||.+|.. .+| . +|+|.+|+.++++.... ..+. ....+...++++.+.+..+.+ ..+ .++|+++|++|
T Consensus 38 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-A-PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp CCEECCSSSC--SSC-C-CHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 6899988764 567 6 89999999999976311 1111 112344455565555433411 135 89999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
++.+++.+. .. ..+|++...+|||....+ ...|...
T Consensus 114 ~~~~~~~~~-----~~----------------gd~Vl~~~p~y~~~~~~~-~~~g~~~---------------------- 149 (429)
T 1yiz_A 114 LYATIQGHV-----DE----------------GDEVIIIEPFFDCYEPMV-KAAGGIP---------------------- 149 (429)
T ss_dssp HHHHHHHHC-----CT----------------TCEEEEEESCCTTHHHHH-HHTTCEE----------------------
T ss_pred HHHHHHHhc-----CC----------------CCEEEEcCCCchhHHHHH-HHcCCEE----------------------
Confidence 999999871 11 247999999999965432 2222100
Q ss_pred cccCcceeecCcch-hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 554 FMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 554 ~~~~~~~~~~~P~~-~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
..++.... ... . ....+ + ..| .+.+++.+. .++++|+++.. ++.
T Consensus 150 ------~~~~~~~~~~~~---~---~~~~~----~--~~d--------~~~l~~~l~--------~~~~~v~~~~p-~np 194 (429)
T 1yiz_A 150 ------RFIPLKPNKTGG---T---ISSAD----W--VLD--------NNELEALFN--------EKTKMIIINTP-HNP 194 (429)
T ss_dssp ------EEEECBCCCSSS---S---EEGGG----C--BCC--------HHHHHHHCC--------TTEEEEEEESS-CTT
T ss_pred ------EEEeCCcccccc---c---ccccC----c--ccC--------HHHHHHHhc--------cCceEEEECCC-CCC
Confidence 01111000 000 0 00000 0 001 255666653 36788998987 888
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc----cccc-ccCCCcceeeehhccC-CCccchheeEeCHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNA 706 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~----~a~e-~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~ 706 (719)
.|.+. |++++++|.++|++||+++|+||++++|+++|.. .... .++..+++.+++|.+| +| +++|+++++++
T Consensus 195 tG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~ 272 (429)
T 1yiz_A 195 LGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEA 272 (429)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHH
T ss_pred CCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHH
Confidence 88765 6899999999999999999999999999887752 2221 3455667779999998 78 79999999999
Q ss_pred HHhhhc
Q 005009 707 VFDSFV 712 (719)
Q Consensus 707 i~~~~~ 712 (719)
+++.+.
T Consensus 273 ~~~~l~ 278 (429)
T 1yiz_A 273 LLKNLQ 278 (429)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 59
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.61 E-value=4.6e-15 Score=161.20 Aligned_cols=213 Identities=12% Similarity=0.018 Sum_probs=145.8
Q ss_pred CCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc---CCC-CCChHHHHHHHHHHhccCCCCCCeEEEeC
Q 005009 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM---FPE-NVYEPALECAELLLQGVGKGWASRAYFSD 468 (719)
Q Consensus 393 dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~---~~~-~~~~~~~~Lae~L~~~~~~~~~~rv~f~~ 468 (719)
||+ +|+|+.+ +.++|++.+|+|.+|+.++++++.... ... ...+...++.++|+++++. +..++++
T Consensus 44 ~g~----~~i~~~~---~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~i~~~ 113 (401)
T 2bwn_A 44 GKQ----DITVWCG---NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK---EAALVFS 113 (401)
T ss_dssp CEE----EEEECSC---SCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC---SEEEEES
T ss_pred CCC----cEEEeeC---CCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CcEEEEC
Confidence 677 9999988 456777447999999999998754321 011 2356788999999999874 4555569
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCccc
Q 005009 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (719)
Q Consensus 469 SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (719)
||++|++.+++++.+. ..| +.|.....+|+....++...|..
T Consensus 114 sG~~a~~~~~~~l~~~---~~g-----------------d~Vl~~~~~~~~~~~~~~~~g~~------------------ 155 (401)
T 2bwn_A 114 SAYNANDATLSTLRVL---FPG-----------------LIIYSDSLNHASMIEGIKRNAGP------------------ 155 (401)
T ss_dssp CHHHHHHHHHHHHHHH---STT-----------------CEEEEETTCCHHHHHHHHHSCCC------------------
T ss_pred CcHHHHHHHHHHHhcC---CCC-----------------CEEEECchhhHHHHHHHHHcCCe------------------
Confidence 9999999999875221 111 33445556666555444332210
Q ss_pred CCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 005009 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (719)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPV 628 (719)
.+.+| ++| .+.+++.+... ..+++++|+++++
T Consensus 156 ------------~~~v~--------------~~d------------------~~~le~~l~~~----~~~~~~~v~~~~~ 187 (401)
T 2bwn_A 156 ------------KRIFR--------------HND------------------VAHLRELIAAD----DPAAPKLIAFESV 187 (401)
T ss_dssp ------------EEEEC--------------TTC------------------HHHHHHHHHHS----CTTSCEEEEEESB
T ss_pred ------------EEEEc--------------CCC------------------HHHHHHHHHhh----ccCCceEEEEecC
Confidence 01111 111 24566666641 2246789999997
Q ss_pred cccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCC--Cccee--eehhccC--CCccchhe
Q 005009 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAA 700 (719)
Q Consensus 629 iqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv--~PDIv--tlgK~Lg--gG~~Plsa 700 (719)
++..|.+.+ +++|.++|++||+++|+||+|+ | ||++|..+. ..+++ .+|++ +++|++| || .
T Consensus 188 -~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~~GG-----~ 256 (401)
T 2bwn_A 188 -YSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFGG-----Y 256 (401)
T ss_dssp -CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCSCCE-----E
T ss_pred -cCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccCCCC-----E
Confidence 999999887 8999999999999999999998 4 688887665 55665 34655 8999998 44 4
Q ss_pred eEeCHHHHhhhc
Q 005009 701 TLATNAVFDSFV 712 (719)
Q Consensus 701 vl~~~~i~~~~~ 712 (719)
+++++++.+.+.
T Consensus 257 ~~~~~~~~~~l~ 268 (401)
T 2bwn_A 257 IAASARMVDAVR 268 (401)
T ss_dssp EEECHHHHHHHH
T ss_pred EecCHHHHHHHH
Confidence 778888877653
No 60
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.41 E-value=4e-17 Score=177.40 Aligned_cols=238 Identities=13% Similarity=0.072 Sum_probs=154.7
Q ss_pred ecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC--CC
Q 005009 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KG 459 (719)
Q Consensus 382 ~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~--~~ 459 (719)
.+|.|+++||.+|+ ...+|||..|.. .++ . +|++.+|+.++++...+.... ...+...++++.|.+..+ .+
T Consensus 16 ~~~~g~~~~d~~g~--~~~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~-~~~~l~~~la~~l~~~~g~~~~ 88 (392)
T 3b1d_A 16 RLSHHTYKWKETET--DPQLLPAWIADM--DFE-V-MPEVKQAIHDYAEQLVYGYTY-ASDELLQAVLDWEKSEHQYSFD 88 (392)
Confidence 34667799999986 347999977643 344 3 799999999998753222111 133344455555544333 11
Q ss_pred CCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCC
Q 005009 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (719)
Q Consensus 460 ~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~ 539 (719)
.++++++++|++|++.+++.+. .. ..+|+....+||+....+.... ..
T Consensus 89 -~~~v~~~~g~~~a~~~~~~~~~-----~~----------------gd~vl~~~p~~~~~~~~~~~~g-~~--------- 136 (392)
T 3b1d_A 89 -KEDIVFVEGVVPAISIAIQAFT-----KE----------------GEAVLINSPVYPPFARSVRLNN-RK--------- 136 (392)
Confidence 3679999999999999999872 11 2478999999999654332211 00
Q ss_pred CccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 005009 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (719)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~ 619 (719)
.+.+| +++.+..|. ...+.+++.+.+ .+
T Consensus 137 ---------------------~~~~~--------------~~~~~g~~~----------~d~~~l~~~l~~-------~~ 164 (392)
T 3b1d_A 137 ---------------------LVSNS--------------LKEENGLFQ----------IDFEQLENDIVE-------ND 164 (392)
Confidence 00011 000000000 002445555531 24
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----cccccc--cCCCcceeeehhccC-
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL--LGCVPDIACYGKLLT- 692 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e~--~gv~PDIvtlgK~Lg- 692 (719)
+.+|+++.. +...|.+ .+.+++++|.++|++||+++|+||++++|++.|. ++.... .+..+++.+++|++|
T Consensus 165 ~~~v~~~~~-~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 242 (392)
T 3b1d_A 165 VKLYLLCNP-HNPGGRV-WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNI 242 (392)
Confidence 567777665 7777875 5678999999999999999999999999988773 344333 556677889999998
Q ss_pred CCccchheeEeCH-HHHhhhcC
Q 005009 693 GGVIPLAATLATN-AVFDSFVG 713 (719)
Q Consensus 693 gG~~Plsavl~~~-~i~~~~~~ 713 (719)
+| +++|++++++ ++++.+..
T Consensus 243 ~G-~r~G~~~~~~~~~~~~~~~ 263 (392)
T 3b1d_A 243 AG-TKNSYAIIENPTLCAQFKH 263 (392)
Confidence 88 7999999875 48776643
No 61
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.61 E-value=5.1e-15 Score=160.93 Aligned_cols=227 Identities=11% Similarity=0.048 Sum_probs=147.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CC--CCCChHHHHHHHHHHhccCC-CCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FP--ENVYEPALECAELLLQGVGK-GWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~--~~~~~~~~~Lae~L~~~~~~-~~~~rv~f~~SGsEA~E 475 (719)
.+|||.+|... ..||. +|+|.+|+.+++++..... .. ....+...++++.+.+..+. -..+.++|+++|++|++
T Consensus 35 ~~idl~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~ 112 (407)
T 2zc0_A 35 KLISLAAGDPD-PELIP-RAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALD 112 (407)
T ss_dssp CCEECCSCCCC-TTTSC-HHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHH
T ss_pred ceEeCCCCCCC-chhCC-HHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHH
Confidence 89999988754 45899 9999999999988643111 11 11233344444444332241 01368999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++.+. .. ..+|++...+|||.... +...|..
T Consensus 113 ~~~~~~~-----~~----------------gd~vl~~~p~~~~~~~~-~~~~g~~------------------------- 145 (407)
T 2zc0_A 113 LLGRVLI-----DP----------------GDVVITENPSYINTLLA-FEQLGAK------------------------- 145 (407)
T ss_dssp HHHHHHC-----CT----------------TCEEEEEESCCHHHHHH-HHTTTCE-------------------------
T ss_pred HHHHHhc-----CC----------------CCEEEEeCCChHHHHHH-HHHcCCE-------------------------
Confidence 9999882 11 24799999999985432 2222110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...++.... ..| .+.+++.+.+.. ....++.+|++.|..+...|.
T Consensus 146 ---~~~v~~~~~------------~~d------------------~~~l~~~l~~~~--~~~~~~~~v~~~~~~~nptG~ 190 (407)
T 2zc0_A 146 ---IEGVPVDND------------GMR------------------VDLLEEKIKELK--AKGQKVKLIYTIPTGQNPMGV 190 (407)
T ss_dssp ---EEEEEEETT------------EEC------------------HHHHHHHHHHHH--HTTCCEEEEEECCSSCTTTCC
T ss_pred ---EEEcccCCC------------CCC------------------HHHHHHHHHhhh--cccCCceEEEECCCCCCCCCc
Confidence 001111000 001 245666664100 012367777544433777887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccC---CCcceeeehhccCCCccchheeEeCHHHHhhh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLG---CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~g---v~PDIvtlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
+ .|.+++++|.++|++||+++|+||++++|.+.|.. .....++ ...++.+++|.+|.| +++|++++++++++.+
T Consensus 191 ~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~ 268 (407)
T 2zc0_A 191 T-MSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTG-FRIGWIIAEGEILKKV 268 (407)
T ss_dssp C-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTT-SCCEEEECCHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCC-cceEEEecCHHHHHHH
Confidence 5 47899999999999999999999999998777763 3333333 234566899999998 7999999999998876
Q ss_pred c
Q 005009 712 V 712 (719)
Q Consensus 712 ~ 712 (719)
.
T Consensus 269 ~ 269 (407)
T 2zc0_A 269 L 269 (407)
T ss_dssp H
T ss_pred H
Confidence 4
No 62
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.60 E-value=4.6e-15 Score=160.89 Aligned_cols=245 Identities=11% Similarity=-0.014 Sum_probs=152.0
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc--cCCCCCChHHHHHHHHHHhc
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV--MFPENVYEPALECAELLLQG 455 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~--~~~~~~~~~~~~Lae~L~~~ 455 (719)
++...+|. ++ +.+|++...++|||.+|..+ ++..+|+|++|+.++++..... .......+...+++++|++.
T Consensus 21 ~~~~~~~~--~~-~~~~~~~~~~~id~~~g~~~---~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~ 94 (407)
T 3nra_A 21 VRQSAAGL--EA-LIRGAPIEGRPVDFSHGDVD---AHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAF 94 (407)
T ss_dssp ------CC--TT-TCCSCCCCSCCEETTSCCTT---TSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhh--HH-HhhcCCCCCceeeecCcCCC---CCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 44555553 23 44555111149999886433 4333899999999998753221 11223456778889999887
Q ss_pred cCCCC--CCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 456 VGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 456 ~~~~~--~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
.+... -+.++|+++|++|++.+++... .. ..+|++...+||+....+ ...|..
T Consensus 95 ~g~~~~~~~~i~~~~g~~~a~~~~~~~l~-----~~----------------gd~vl~~~~~~~~~~~~~-~~~g~~--- 149 (407)
T 3nra_A 95 TGAPVDARDGLIITPGTQGALFLAVAATV-----AR----------------GDKVAIVQPDYFANRKLV-EFFEGE--- 149 (407)
T ss_dssp HTSCCCTTTSEEEESHHHHHHHHHHHTTC-----CT----------------TCEEEEEESCCTHHHHHH-HHTTCE---
T ss_pred hCCCCCCCCcEEEeCCcHHHHHHHHHHhC-----CC----------------CCEEEEcCCcccchHHHH-HHcCCE---
Confidence 66320 1589999999999999998761 11 247888888888744332 222211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.+.+|..+.. ..+. .+ .-| .+.+++.+.+
T Consensus 150 ---------------------------~~~~~~~~~~---------~~~~--~~--~~d--------~~~l~~~l~~--- 178 (407)
T 3nra_A 150 ---------------------------MVPVQLDYVS---------ADET--RA--GLD--------LTGLEEAFKA--- 178 (407)
T ss_dssp ---------------------------EEEEEBCCCS---------SCCS--SC--CBC--------HHHHHHHHHT---
T ss_pred ---------------------------EEEeeccccc---------ccCc--CC--CcC--------HHHHHHHHhh---
Confidence 0111100000 0000 00 001 3567777762
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-ccccc-----CCCcceeee
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-----GCVPDIACY 687 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~-----gv~PDIvtl 687 (719)
+..+|++... +...|.+. |.+++++|.++|++||+++|+||++++|++.|+.+ ....+ +...++.++
T Consensus 179 -----~~~~v~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~ 251 (407)
T 3nra_A 179 -----GARVFLFSNP-NNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGP 251 (407)
T ss_dssp -----TCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECS
T ss_pred -----CCcEEEEcCC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCc
Confidence 2334444443 67778755 78899999999999999999999999998888744 33333 233446689
Q ss_pred hhccC-CCccchheeEeCHHHHhhhc
Q 005009 688 GKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 688 gK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+|.+| .| +++|++++++++++.+.
T Consensus 252 sK~~g~~G-~r~G~~~~~~~~~~~l~ 276 (407)
T 3nra_A 252 SKTESLSG-YRLGVAFGSRAIIARME 276 (407)
T ss_dssp SSTTCCGG-GCCEEEEECHHHHHHHH
T ss_pred ccccCCCe-eeEEEEEcCHHHHHHHH
Confidence 99998 78 79999999999987764
No 63
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.56 E-value=1.9e-14 Score=154.96 Aligned_cols=216 Identities=12% Similarity=0.018 Sum_probs=143.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCC-hHHHHHHHHHHhcc----CCC-CCC-eEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGV----GKG-WAS-RAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~-~~~~~Lae~L~~~~----~~~-~~~-rv~f~~SGsE 472 (719)
++|||.+|.. .+| . +|++.+|+.+++++.... .+.. ....+|.+.|++++ +.+ ..+ .++|+++|++
T Consensus 26 ~~idl~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~---~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 26 GLIDLSIGST--DLP-P-PEAPLKALAEALNDPTTY---GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp CCEECSSCCC--CCC-C-CHHHHHHHHHHTTCGGGS---SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred CEEeccCCCC--CCC-C-CHHHHHHHHHHHhCCCcC---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 8999988764 567 4 899999999998653111 2233 24556666666654 532 013 8999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++... .. ..+|+....+||+....+... |..
T Consensus 99 a~~~~~~~l~-----~~----------------gd~vl~~~p~y~~~~~~~~~~-g~~---------------------- 134 (376)
T 2dou_A 99 GLAHLLLALT-----EP----------------EDLLLLPEVAYPSYFGAARVA-SLR---------------------- 134 (376)
T ss_dssp HHHHHHHHHC-----CT----------------TCEEEEESSCCHHHHHHHHHT-TCE----------------------
T ss_pred HHHHHHHHhc-----CC----------------CCEEEECCCCcHhHHHHHHHc-CCE----------------------
Confidence 9999998761 11 247999999999965443221 110
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
...++.++.+. .|. +.+++.+. .++.+|+++.. +..
T Consensus 135 ------~~~~~~~~~~~-----------~d~------------------~~l~~~l~--------~~~~~v~l~~p-~np 170 (376)
T 2dou_A 135 ------TFLIPLREDGL-----------ADL------------------KAVPEGVW--------REAKVLLLNYP-NNP 170 (376)
T ss_dssp ------EEEECBCTTSS-----------BCG------------------GGSCHHHH--------HHEEEEEECSS-CTT
T ss_pred ------EEEeeCCCCCC-----------CCH------------------HHHHHhhc--------cCceEEEECCC-CCC
Confidence 01111111110 111 22334443 24677777744 677
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccc---cCCCcceeeehhccC-CCccchheeEeCHHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL---LGCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~---~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i 707 (719)
.|.+ .|.+++++|.++|++||+++|+||++++|++.|+.. ..+. .+...++.+++|.+| +| +++|++++++++
T Consensus 171 tG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~ 248 (376)
T 2dou_A 171 TGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG-FRLGFALGSEEA 248 (376)
T ss_dssp TCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG-GCCEEEEECHHH
T ss_pred cCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh-heeEEEecCHHH
Confidence 7876 478999999999999999999999999998777532 1222 233455668999998 78 799999999999
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
++.+.
T Consensus 249 ~~~l~ 253 (376)
T 2dou_A 249 LARLE 253 (376)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 64
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.56 E-value=2.4e-14 Score=153.73 Aligned_cols=217 Identities=12% Similarity=0.090 Sum_probs=143.7
Q ss_pred EeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCC
Q 005009 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469 (719)
Q Consensus 390 ~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~S 469 (719)
++.+|+ ++|||.++. ..+| . +|++.+|+.++++.... +......+|.++|+++.+.+ .+.++|+++
T Consensus 19 ~~~~~~----~~idl~~~~--~~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~-~~~v~~~~g 84 (364)
T 1lc5_A 19 LGISPD----QLLDFSANI--NPLG-M-PVSVKRALIDNLDCIER-----YPDADYFHLHQALARHHQVP-ASWILAGNG 84 (364)
T ss_dssp HTSCGG----GSEECSSCC--CTTC-C-CHHHHHHHHHTGGGGGS-----CCCTTCHHHHHHHHHHHTSC-GGGEEEESS
T ss_pred cCCCcc----ceEEecccc--CCCC-C-CHHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHCcC-HHHEEECCC
Confidence 345777 899998876 3577 6 89999999999876322 12223467888888877632 368999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccC
Q 005009 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 470 GsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
|++|++.+++.+ . | .+|++...+||+....+... |..
T Consensus 85 ~~~al~~~~~~~----~---g----------------d~vl~~~p~y~~~~~~~~~~-g~~------------------- 121 (364)
T 1lc5_A 85 ETESIFTVASGL----K---P----------------RRAMIVTPGFAEYGRALAQS-GCE------------------- 121 (364)
T ss_dssp HHHHHHHHHHHH----C---C----------------SEEEEEESCCTHHHHHHHHT-TCE-------------------
T ss_pred HHHHHHHHHHHc----C---C----------------CeEEEeCCCcHHHHHHHHHc-CCe-------------------
Confidence 999999999876 1 1 37999999999965443221 110
Q ss_pred CCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEEccc
Q 005009 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG-ALIIEPV 628 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iA-AvIvEPV 628 (719)
...++.... ++ +.. .+.+.+.+. .++. .+|.+|
T Consensus 122 ---------~~~v~~~~~-------------~~----~~~-----------l~~~~~~~~--------~~~~~v~i~~p- 155 (364)
T 1lc5_A 122 ---------IRRWSLREA-------------DG----WQL-----------TDAILEALT--------PDLDCLFLCTP- 155 (364)
T ss_dssp ---------EEEEECCGG-------------GT----TCC-----------CTTHHHHCC--------TTCCEEEEESS-
T ss_pred ---------EEEEeCCcc-------------cc----cch-----------hHHHHHhcc--------CCCCEEEEeCC-
Confidence 001111100 00 000 011111221 2233 455677
Q ss_pred cccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccc-cccCCCcceeeehhccC-CCccchheeE-eC
Q 005009 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTA-DLLGCVPDIACYGKLLT-GGVIPLAATL-AT 704 (719)
Q Consensus 629 iqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~-e~~gv~PDIvtlgK~Lg-gG~~Plsavl-~~ 704 (719)
+...|.+ .|.+++++|.++|++||+++|+||++++|++.|.. +.. +.++....+.+++|.+| +| +++|+++ ++
T Consensus 156 -~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~ 232 (364)
T 1lc5_A 156 -NNPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPG-LRLGYLVNSD 232 (364)
T ss_dssp -CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTT-TCCEEEECCC
T ss_pred -CCCCCCC-CCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCc-cceEEEEECC
Confidence 4656765 57899999999999999999999999988765542 221 23344444558999998 78 7999999 99
Q ss_pred HHHHhhhc
Q 005009 705 NAVFDSFV 712 (719)
Q Consensus 705 ~~i~~~~~ 712 (719)
+++++.+.
T Consensus 233 ~~~~~~l~ 240 (364)
T 1lc5_A 233 DAAMARMR 240 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 65
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.55 E-value=6e-14 Score=151.74 Aligned_cols=231 Identities=9% Similarity=-0.011 Sum_probs=154.0
Q ss_pred EEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC--CCC-eEE
Q 005009 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WAS-RAY 465 (719)
Q Consensus 389 l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~--~~~-rv~ 465 (719)
++|.+|+ ++|||.+|.. .++ . +|.|.+|+.++++............+...++++.|.+..+.. ..+ .++
T Consensus 24 ~~~~~g~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~ 95 (396)
T 3jtx_A 24 ISAPEGM----EAVPLHIGEP--KHP-T-PKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEIL 95 (396)
T ss_dssp CCCCTTC----CCEECSCCSC--CSC-C-CHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEE
T ss_pred hhhccCC----CeEEeCCcCC--CCC-C-CHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEE
Confidence 5688899 9999999763 344 5 899999999998754433222223566777888877654421 135 899
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCC
Q 005009 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (719)
Q Consensus 466 f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~ 545 (719)
|+++|++|++.+++... ..|. ..++.+|++...+||+....+... |..
T Consensus 96 ~t~g~~~al~~~~~~~~-----~~g~-----------~~~~d~vl~~~p~~~~~~~~~~~~-g~~--------------- 143 (396)
T 3jtx_A 96 PVLGSREALFSFVQTVL-----NPVS-----------DGIKPAIVSPNPFYQIYEGATLLG-GGE--------------- 143 (396)
T ss_dssp EESSHHHHHHHHHHHHC-----CC--------------CCCCEEEEEESCCHHHHHHHHHT-TCE---------------
T ss_pred EcCCcHHHHHHHHHHHh-----CCCC-----------ccCCCEEEEcCCCcHhHHHHHHHc-CCE---------------
Confidence 99999999999999872 1110 001258999999999865533222 110
Q ss_pred cccCCCcccccCcceeecCc-chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 005009 546 LFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (719)
Q Consensus 546 ~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI 624 (719)
...++.+ +.+. .| .+.+++.+.+ ++.+|+
T Consensus 144 -------------~~~v~~~~~g~~-----------~d------------------~~~l~~~~~~--------~~~~v~ 173 (396)
T 3jtx_A 144 -------------IHFANCPAPSFN-----------PD------------------WRSISEEVWK--------RTKLVF 173 (396)
T ss_dssp -------------EEEEECCTTTCC-----------CC------------------GGGSCHHHHH--------TEEEEE
T ss_pred -------------EEEeecCCCCCc-----------cC------------------HHHHHHhhcc--------CcEEEE
Confidence 0011110 0000 01 1234444542 456666
Q ss_pred EccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC-cccccc--------ccCCCcceeeehhccC-CC
Q 005009 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTAD--------LLGCVPDIACYGKLLT-GG 694 (719)
Q Consensus 625 vEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG-~~~a~e--------~~gv~PDIvtlgK~Lg-gG 694 (719)
++.. +...|.+. |.+.+++|.++|++||+++|+||++++|.+.| ..+... .++...++.+++|.++ .|
T Consensus 174 l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (396)
T 3jtx_A 174 VCSP-NNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPG 251 (396)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGG
T ss_pred EECC-CCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcc
Confidence 6554 77778765 56679999999999999999999999998888 444332 1456677789999876 57
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+++|++++++++++.+.
T Consensus 252 -~r~G~~~~~~~~~~~~~ 268 (396)
T 3jtx_A 252 -LRSGFVAGDAELLKNFL 268 (396)
T ss_dssp -GCCEEEEECHHHHHHHH
T ss_pred -cceEEEEeCHHHHHHHH
Confidence 79999999999988764
No 66
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.54 E-value=3.7e-14 Score=152.93 Aligned_cols=212 Identities=11% Similarity=0.048 Sum_probs=146.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCC-hHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~-~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~Al 478 (719)
.+|||.+|.. .++ . +|.+.+++.+++++... +.. ....+|.+.|+++++.+ .+.++|+++|++|++.++
T Consensus 26 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~~l~~~la~~~~~~-~~~v~~~~g~~~a~~~~~ 95 (381)
T 1v2d_A 26 GAVNLGQGFP--SNP-P-PPFLLEAVRRALGRQDQ-----YAPPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLL 95 (381)
T ss_dssp TCEECCCCSC--SSC-C-CHHHHHHHHHHTTTSCS-----CCCTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHH
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHhcCCC-hhhEEEcCChHHHHHHHH
Confidence 4788887754 456 6 89999999999876111 111 23467888888877643 357999999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+.+. .. ..+|+..+.+||+.... +...|..
T Consensus 96 ~~~~-----~~----------------gd~Vl~~~~~~~~~~~~-~~~~g~~---------------------------- 125 (381)
T 1v2d_A 96 QSLV-----GP----------------GDEVVVLEPFFDVYLPD-AFLAGAK---------------------------- 125 (381)
T ss_dssp HHHC-----CT----------------TCEEEEEESCCTTHHHH-HHHTTCE----------------------------
T ss_pred HHhC-----CC----------------CCEEEEcCCCchhHHHH-HHHcCCE----------------------------
Confidence 9871 11 24799999999985532 2222110
Q ss_pred ceeecCc---chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 559 KWILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 559 ~~~~~~P---~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...++.+ +.+ ..| .+.+++.+. .++.+|+++.. +...|.
T Consensus 126 ~~~v~~~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~nptG~ 167 (381)
T 1v2d_A 126 ARLVRLDLTPEGF-----------RLD------------------LSALEKALT--------PRTRALLLNTP-MNPTGL 167 (381)
T ss_dssp EEEEECEEETTEE-----------ECC------------------HHHHHTTCC--------TTEEEEEEESS-CTTTCC
T ss_pred EEEEeCCCCCccC-----------CcC------------------HHHHHHhcC--------cCCEEEEECCC-CCCCCC
Confidence 0111111 001 011 244554442 35788888876 787887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccc--cCc-cccccccCCCcceeeehhccC-CCccchheeEeCHHHHhhh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGV-ETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR--tG~-~~a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
+. |.+++++|.++|++||+++|+||++++|.. .+. ++.. .++..+++.+++|.+| .| +++|++++++++++.+
T Consensus 168 ~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 244 (381)
T 1v2d_A 168 VF-GERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRL 244 (381)
T ss_dssp CC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHH
T ss_pred cc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh-cCCCEEEEeechhhcCCcc-cceEEEEeCHHHHHHH
Confidence 64 679999999999999999999999998743 322 2222 4577788889999998 68 7999999999888765
Q ss_pred c
Q 005009 712 V 712 (719)
Q Consensus 712 ~ 712 (719)
.
T Consensus 245 ~ 245 (381)
T 1v2d_A 245 A 245 (381)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1e-13 Score=153.90 Aligned_cols=228 Identities=10% Similarity=0.020 Sum_probs=149.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC--CCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~--~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~ 476 (719)
.+|||.+|.. .++ . +|.|.+|+.++++....... .....+...++++.+.+..+.+ ..+.++++++|++|++.
T Consensus 58 ~~i~l~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~ 133 (447)
T 3b46_A 58 ELINLGQGFF--SYS-P-PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILS 133 (447)
T ss_dssp CCEECCCCSC--SSC-C-CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHH
T ss_pred CeEEccCCCC--CCC-C-CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 8999988864 455 6 89999999999876221111 1122345566666666544421 12579999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++.+. .. ..+||..+.+||+....+ ...|...
T Consensus 134 ~~~~l~-----~~----------------gd~Vlv~~p~y~~~~~~~-~~~g~~~------------------------- 166 (447)
T 3b46_A 134 CLMGLL-----NA----------------GDEVIVFEPFFDQYIPNI-ELCGGKV------------------------- 166 (447)
T ss_dssp HHHHHC-----CT----------------TCEEEEEESCCTTHHHHH-HHTTCEE-------------------------
T ss_pred HHHHHc-----CC----------------CCEEEEeCCCchhHHHHH-HHcCCEE-------------------------
Confidence 999872 11 247999999999854432 2222110
Q ss_pred CcceeecCc-ch--hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 557 NSKWILSLP-EW--LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 557 ~~~~~~~~P-~~--~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
..++.. +. ..+.. . -.+ + ..| .+.|++.+. .++.+|+++.. +...
T Consensus 167 ---~~v~~~~~~~~~~~~~-~-----~~~----~--~~d--------~~~l~~~l~--------~~~~~v~l~~p-~npt 214 (447)
T 3b46_A 167 ---VYVPINPPKELDQRNT-R-----GEE----W--TID--------FEQFEKAIT--------SKTKAVIINTP-HNPI 214 (447)
T ss_dssp ---EEEEEECCGGGGTSCB-C-----STT----S--EEC--------HHHHHTTCC--------TTEEEEEEESS-CTTT
T ss_pred ---EEEeCCCccccccccc-c-----ccC----c--ccC--------HHHHHHhhc--------cCCeEEEEeCC-CCCC
Confidence 011110 00 00000 0 000 0 001 244554442 36788888876 8888
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc---ccc--cccCCCcceeeehhccC-CCccchheeEe-CHH
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTA--DLLGCVPDIACYGKLLT-GGVIPLAATLA-TNA 706 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~---~a~--e~~gv~PDIvtlgK~Lg-gG~~Plsavl~-~~~ 706 (719)
|.+. +.+++++|.++|++||+++|+||++++|+++|.. ... +.++..+++.+++|.+| .| +++|++++ +++
T Consensus 215 G~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~riG~~~~~~~~ 292 (447)
T 3b46_A 215 GKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG-WRIGWVLSLNAE 292 (447)
T ss_dssp CCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT-SCCEEEECSCHH
T ss_pred Cccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc-hhhEEEEeCCHH
Confidence 8765 6899999999999999999999999998877742 222 23567777889999998 78 69999999 999
Q ss_pred HHhhhc
Q 005009 707 VFDSFV 712 (719)
Q Consensus 707 i~~~~~ 712 (719)
+++.+.
T Consensus 293 l~~~l~ 298 (447)
T 3b46_A 293 LLSYAA 298 (447)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887664
No 68
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.53 E-value=1.3e-13 Score=148.75 Aligned_cols=224 Identities=11% Similarity=-0.010 Sum_probs=148.7
Q ss_pred CCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCCh
Q 005009 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (719)
Q Consensus 393 dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SG 470 (719)
+|+ .+|||.+|.. .+| . +|.+.+|+.++++..... .......+...++++.+.+..+-. ..+.++|+++|
T Consensus 28 ~g~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 99 (388)
T 1j32_A 28 EGI----DVCSFSAGEP--DFN-T-PKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG 99 (388)
T ss_dssp TTC----CCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred cCC----CEEECCCCCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCH
Confidence 567 8999988754 456 5 899999999988653211 111123344556666665433310 13689999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCC
Q 005009 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 471 sEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++|++.+++.+. .. ..+|+....+||+.... +...|..
T Consensus 100 ~~a~~~~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~-~~~~g~~-------------------- 137 (388)
T 1j32_A 100 KQSIFNLMLAMI-----EP----------------GDEVIIPAPFWVSYPEM-VKLAEGT-------------------- 137 (388)
T ss_dssp HHHHHHHHHHHC-----CT----------------TCEEEEESSCCTHHHHH-HHHTTCE--------------------
T ss_pred HHHHHHHHHHhc-----CC----------------CCEEEEcCCCChhHHHH-HHHcCCE--------------------
Confidence 999999999871 11 24799999999985432 2222210
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.+..- .|. -| .+.+++.+. .++.+|++++. +
T Consensus 138 --------~~~v~~~~~~----------~~~---------~d--------~~~l~~~l~--------~~~~~v~~~~p-~ 173 (388)
T 1j32_A 138 --------PVILPTTVET----------QFK---------VS--------PEQIRQAIT--------PKTKLLVFNTP-S 173 (388)
T ss_dssp --------EEEECCCGGG----------TTC---------CC--------HHHHHHHCC--------TTEEEEEEESS-C
T ss_pred --------EEEecCCccc----------CCC---------CC--------HHHHHHhcC--------cCceEEEEeCC-C
Confidence 0111111000 000 01 255666664 25778888876 7
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc----ccccc--cCCCcceeeehhccC-CCccchheeEe
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADL--LGCVPDIACYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~----~a~e~--~gv~PDIvtlgK~Lg-gG~~Plsavl~ 703 (719)
...|.+. |.+.+++|.++|++||+++|+||++++|.+.|.. +.... ++..+++.+++|.+| .| +++|++++
T Consensus 174 nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~ 251 (388)
T 1j32_A 174 NPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG-WRVGFLAG 251 (388)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEEC
T ss_pred CCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcc-cceEEEEe
Confidence 8788775 6899999999999999999999999998777642 22221 455667779999998 78 79999999
Q ss_pred CHHHHhhhc
Q 005009 704 TNAVFDSFV 712 (719)
Q Consensus 704 ~~~i~~~~~ 712 (719)
++++++.+.
T Consensus 252 ~~~~~~~l~ 260 (388)
T 1j32_A 252 PVPLVKAAT 260 (388)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999887663
No 69
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.53 E-value=2.2e-14 Score=155.81 Aligned_cols=219 Identities=16% Similarity=0.140 Sum_probs=146.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCC-hHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~-~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~Al 478 (719)
++|||.+|..+ ..||. +|++.+|+.+++++..... ..+.. ....+|.+.|+++.+.+ .+.++++++|++|++.++
T Consensus 33 ~~i~l~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 33 GILSFAGGLPA-PELFP-KEEAAEAAARILREKGEVA-LQYSPTEGYAPLRAFVAEWIGVR-PEEVLITTGSQQALDLVG 108 (397)
T ss_dssp TCEEESSCCCC-GGGCC-HHHHHHHHHHHHHHHHHHH-TSCCCTTCCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHH
T ss_pred CceecCCCCCC-chhCC-HHHHHHHHHHHHHhcchhh-hCCCCCCCCHHHHHHHHHHhCCC-hhhEEEeccHHHHHHHHH
Confidence 78999988764 45899 9999999999987643111 01111 22456777777766522 368999999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+... .. ..+|+....+||+....+.. .|..
T Consensus 109 ~~~~-----~~----------------gd~Vl~~~p~y~~~~~~~~~-~g~~---------------------------- 138 (397)
T 2zyj_A 109 KVFL-----DE----------------GSPVLLEAPSYMGAIQAFRL-QGPR---------------------------- 138 (397)
T ss_dssp HHHC-----CT----------------TCEEEEEESCCHHHHHHHHT-TCCE----------------------------
T ss_pred HHhC-----CC----------------CCEEEEeCCCcHHHHHHHHH-cCCE----------------------------
Confidence 9771 11 24799999999986543222 1110
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCcccc
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHM 637 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI-vEPViqg~gG~~~ 637 (719)
.+.+|. .. + .-| .+.+++.+.+ .++.+|+ +... +...|.+
T Consensus 139 --~~~~~~--------------~~-~-----~~d--------~~~l~~~l~~-------~~~~~v~~~~~~-~nptG~~- 179 (397)
T 2zyj_A 139 --FLTVPA--------------GE-E-----GPD--------LDALEEVLKR-------ERPRFLYLIPSF-QNPTGGL- 179 (397)
T ss_dssp --EEEEEE--------------ET-T-----EEC--------HHHHHHHHHH-------CCCSCEEECCBS-CTTTCCB-
T ss_pred --EEecCc--------------CC-C-----CCC--------HHHHHHHHhh-------cCCeEEEECCCC-cCCCCCc-
Confidence 011110 00 0 001 2556777753 1345654 4443 6777875
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCC------cceeeehhccCCCccchheeEeCHHHHhh
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCV------PDIACYGKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~------PDIvtlgK~LggG~~Plsavl~~~~i~~~ 710 (719)
.|.+++++|.++|++||+++|+||++++|+++|.. .....++.. ..+.+++|.+|+| +++|++++++++++.
T Consensus 180 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~ 258 (397)
T 2zyj_A 180 TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG-LRVAFAVAHPEALQK 258 (397)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG-GCCEEEECCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc-ceeEEEecCHHHHHH
Confidence 47899999999999999999999999999887763 333333322 2345899999988 799999999998877
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 259 l~ 260 (397)
T 2zyj_A 259 LV 260 (397)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 70
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.52 E-value=7e-14 Score=151.71 Aligned_cols=214 Identities=8% Similarity=0.005 Sum_probs=141.5
Q ss_pred EEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEe
Q 005009 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467 (719)
Q Consensus 388 ~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~ 467 (719)
.++|.+++ .+.++...+++.+++|. .++..+. ..+++++|+++++.. +.++|+
T Consensus 5 ~~~~~~~~----~~~~~~~~~~~~~~~h~-~~~~~~~--------------------~~~~~~~l~~~~~~~--~~v~~~ 57 (379)
T 3ke3_A 5 LRQDIDPN----GLLEYSVVYTDRALNHM-SKAFQEV--------------------MNDLLSNLKTVYNAE--AAVIIP 57 (379)
T ss_dssp ---CCSTT----SCCCCCSSCCTTSCCTT-SHHHHHH--------------------HHHHHHHHHHHHTCS--EEEEEE
T ss_pred hhccCCHH----HHHHHHHhccCCCCCCC-CHHHHHH--------------------HHHHHHHHHHHhCCC--CEEEEc
Confidence 46889998 88899888888888998 7765533 335667777777643 578999
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcc
Q 005009 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (719)
Q Consensus 468 ~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~ 547 (719)
+||++|++++++.+ . . +.+||++..+|||.+...+........
T Consensus 58 ~sgt~a~~~~~~~~----~--~----------------gd~vi~~~~~~~~~~~~~~~~~~g~~~--------------- 100 (379)
T 3ke3_A 58 GSGTYGMEAVARQL----T--I----------------DEDCLIIRNGWFSYRWTQILEKGKFAK--------------- 100 (379)
T ss_dssp SCHHHHHHHHHHHH----C--T----------------TCEEEEEECSHHHHHHHHHHHHHCCSS---------------
T ss_pred CChhHHHHHHHHhC----C--C----------------CCeEEEEeCCchhHHHHHHHHHhCCCC---------------
Confidence 99999999998654 1 1 248999999999976544332110000
Q ss_pred cCCCcccccCcceeecCcc----hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 005009 548 LDPPTVFMYNSKWILSLPE----WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (719)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~----~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAv 623 (719)
....++.|. .+... ....| .+.+++.+.+ . ++.+|
T Consensus 101 ----------~~~~~~~~~~g~~~~~~~------~~~~d------------------~~~l~~~i~~----~---~~~~v 139 (379)
T 3ke3_A 101 ----------SSTVLTAERTEDTEAPKP------FAPVD------------------IETAVAKIKE----D---KSAIV 139 (379)
T ss_dssp ----------EEEEEECEESSCCSSCCC------EECCC------------------HHHHHHHHHH----H---TCSEE
T ss_pred ----------ceEEEeccccccccccCC------CCCCC------------------HHHHHHHHhh----c---CCcEE
Confidence 001111111 00000 00011 2556777742 1 22345
Q ss_pred EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEe
Q 005009 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703 (719)
Q Consensus 624 IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~ 703 (719)
++..+ ....|.+. |.+|+++|.++|++||++||+||+|+ | +..+..+.+|+...+.+..|+|+|+ ..+|++++
T Consensus 140 ~~~~~-~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~-~g~g~~~~ 212 (379)
T 3ke3_A 140 YAPHV-ETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSST-PCAGLVML 212 (379)
T ss_dssp EEESE-ETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSC-CCEEEEEE
T ss_pred EEEee-cCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCC-CceEEEEE
Confidence 55443 45566554 68899999999999999999999997 4 5677777888866667778999886 46899999
Q ss_pred CHHHHhhhcC
Q 005009 704 TNAVFDSFVG 713 (719)
Q Consensus 704 ~~~i~~~~~~ 713 (719)
++++++.+..
T Consensus 213 ~~~~~~~l~~ 222 (379)
T 3ke3_A 213 SAAAIKKVES 222 (379)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHhhhc
Confidence 9999887754
No 71
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.52 E-value=1.8e-13 Score=147.78 Aligned_cols=219 Identities=13% Similarity=0.034 Sum_probs=146.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCC-CCC-eEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~-~~~-rv~f~~SGsEA~E~ 476 (719)
.+|||.+|.. .+| . +|++.+|+.++++.... ........+....+++.+.+..+.+ ..+ .++|+++|++|++.
T Consensus 31 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 31 QAINLSQGFP--DFD-G-PRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 5889888754 466 5 89999999999876211 1111112344555555555433421 135 89999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... .. ..+|+....+||+.... +...|..
T Consensus 107 ~~~~~~-----~~----------------gd~vl~~~p~~~~~~~~-~~~~g~~-------------------------- 138 (386)
T 1u08_A 107 AITALV-----RN----------------GDEVICFDPSYDSYAPA-IALSGGI-------------------------- 138 (386)
T ss_dssp HHHHHC-----CT----------------TCEEEEEESCCTTHHHH-HHHTTCE--------------------------
T ss_pred HHHHhC-----CC----------------CCEEEEeCCCchhHHHH-HHHcCCE--------------------------
Confidence 999871 11 24799999999985432 2222110
Q ss_pred CcceeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 557 NSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 557 ~~~~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...++... .+ ..| .+.+++.+. .++.+|+++.. +...|.
T Consensus 139 --~~~v~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~l~~p-~nptG~ 178 (386)
T 1u08_A 139 --VKRMALQPPHF-----------RVD------------------WQEFAALLS--------ERTRLVILNTP-HNPSAT 178 (386)
T ss_dssp --EEEEECCTTTC-----------CCC------------------HHHHHHHCC--------TTEEEEEEESS-CTTTCC
T ss_pred --EEEeecCcccC-----------cCC------------------HHHHHHhhc--------ccCEEEEEeCC-CCCCCc
Confidence 00111110 00 001 245666653 35778888875 788887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----ccccc-ccCCCcceeeehhccC-CCccchheeEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e-~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~ 709 (719)
+. |.+++++|.++|++||+++|+||++++|.+.|. ++... .++....+.+++|.+| .| +++|++++++++++
T Consensus 179 ~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~ 256 (386)
T 1u08_A 179 VW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISA 256 (386)
T ss_dssp CC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHH
T ss_pred cC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc-cceEEEEcCHHHHH
Confidence 64 788999999999999999999999999877775 22332 3456666779999998 78 79999999999887
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 257 ~l~ 259 (386)
T 1u08_A 257 EIR 259 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 72
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.52 E-value=1e-13 Score=147.78 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=142.1
Q ss_pred CCceEEEe-CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCC
Q 005009 384 GENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462 (719)
Q Consensus 384 G~g~~l~D-~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~ 462 (719)
|...+.++ .+|+ ++|||.++.. .++ . +|+|.+|+.++++..... ..+...++.++|++..+-. .+
T Consensus 14 g~~~~~~~~~~~~----~~idl~~~~~--~~~-~-~~~v~~a~~~~~~~~~~y-----~~~~~~~l~~~la~~~~~~-~~ 79 (361)
T 3ftb_A 14 GGDIYTEGVFKGR----ELLDYSSNIN--PLG-I-PKSFLNNIDEGIKNLGVY-----PDVNYRRLNKSIENYLKLK-DI 79 (361)
T ss_dssp ------------------CEETTCCCC--TTC-S-CHHHHTTHHHHHHGGGSC-----CCTTCHHHHHHHHHHHTCC-SC
T ss_pred CCCHHHHhhcCCC----CEEEecCCCC--CCC-C-CHHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHHHhCCC-cc
Confidence 44333444 4888 9999998753 455 5 899999999998874322 2333467888888877632 36
Q ss_pred eEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCcc
Q 005009 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (719)
Q Consensus 463 rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~ 542 (719)
.++|+++|++|++.+++.+ .+|+....+||+....+... |..
T Consensus 80 ~i~~~~g~t~al~~~~~~~-------------------------d~vi~~~~~~~~~~~~~~~~-g~~------------ 121 (361)
T 3ftb_A 80 GIVLGNGASEIIELSISLF-------------------------EKILIIVPSYAEYEINAKKH-GVS------------ 121 (361)
T ss_dssp EEEEESSHHHHHHHHHTTC-------------------------SEEEEEESCCTHHHHHHHHT-TCE------------
T ss_pred eEEEcCCHHHHHHHHHHHc-------------------------CcEEEecCChHHHHHHHHHc-CCe------------
Confidence 8999999999999998865 17899999999854433222 110
Q ss_pred CCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 005009 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (719)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA 622 (719)
...++.... +. + + .+.+++.+. . ..+.
T Consensus 122 ----------------~~~~~~~~~-------------~~----~-------~-----~~~l~~~l~-------~-~~~v 148 (361)
T 3ftb_A 122 ----------------VVFSYLDEN-------------MC----I-------D-----YEDIISKID-------D-VDSV 148 (361)
T ss_dssp ----------------EEEEECCTT-------------SC----C-------C-----HHHHHHHTT-------T-CSEE
T ss_pred ----------------EEEeecCcc-------------cC----C-------C-----HHHHHHhcc-------C-CCEE
Confidence 001111100 00 0 0 145666664 1 2344
Q ss_pred EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccch
Q 005009 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPL 698 (719)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Pl 698 (719)
++..| +...|.+. |.+.+++|.++|++||+++|+||++++|++.+........+..++++ +++|.+| +| +++
T Consensus 149 ~i~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~ 224 (361)
T 3ftb_A 149 IIGNP--NNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPG-IRF 224 (361)
T ss_dssp EEETT--BTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGG-GCC
T ss_pred EEeCC--CCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCC-cce
Confidence 45556 56667655 67789999999999999999999999987763333334444444444 7899998 78 799
Q ss_pred heeE-eCHHHHhhhcCC
Q 005009 699 AATL-ATNAVFDSFVGD 714 (719)
Q Consensus 699 savl-~~~~i~~~~~~~ 714 (719)
|+++ .++++++.+...
T Consensus 225 g~~~~~~~~~~~~~~~~ 241 (361)
T 3ftb_A 225 GYGITNNKEIAAKIKAK 241 (361)
T ss_dssp EEEEESCHHHHHHHHTT
T ss_pred eEEEeCCHHHHHHHHhh
Confidence 9988 899999887654
No 73
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.52 E-value=1.5e-13 Score=150.14 Aligned_cols=222 Identities=12% Similarity=0.028 Sum_probs=144.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChHHHHHHHHHHhccCCC-CCC-eEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~-~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~-rv~f~~SGsEA~E~ 476 (719)
.+|||.+|.. .+| . +|++.+|+.++++.. ..........+...++++.+.+..+.+ ..+ .++|+++|++|++.
T Consensus 26 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~ 101 (411)
T 2o0r_A 26 GAVNLGQGFP--DED-G-PPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAA 101 (411)
T ss_dssp TCEESSCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHH
T ss_pred CeeeccCcCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHH
Confidence 4788877653 466 5 899999999999762 111111112344555555555433421 134 89999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++.+. .. ..+|++...+||+.... +...|..
T Consensus 102 ~~~~~~-----~~----------------gd~Vl~~~~~y~~~~~~-~~~~g~~-------------------------- 133 (411)
T 2o0r_A 102 AVLGLV-----EP----------------GSEVLLIEPFYDSYSPV-VAMAGAH-------------------------- 133 (411)
T ss_dssp HHHHHC-----CT----------------TCEEEEEESCCTTHHHH-HHHTTCE--------------------------
T ss_pred HHHHhc-----CC----------------CCEEEEeCCCcHhHHHH-HHHcCCE--------------------------
Confidence 998871 11 24799999999985432 2222210
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
...++..... ++ + .-| .+.+++.+. .++.+|+++.. +...|.+
T Consensus 134 --~~~v~~~~~~------------~~----~--~~d--------~~~l~~~l~--------~~~~~v~l~~~-~nptG~~ 176 (411)
T 2o0r_A 134 --RVTVPLVPDG------------RG----F--ALD--------ADALRRAVT--------PRTRALIINSP-HNPTGAV 176 (411)
T ss_dssp --EEEEECEEET------------TE----E--ECC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEeeccccc------------cC----C--CCC--------HHHHHHhhc--------cCceEEEEeCC-CCCCCCC
Confidence 0111111000 00 0 001 255666653 25778888876 8888876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccc----cCCCcceeeehhccC-CCccchheeEeCHHHHhh
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL----LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~----~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
.|.+++++|.++|++||+++|+||++++|++.|+. ..... ++....+.+++|.+| .| +++|++++++++++.
T Consensus 177 -~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~ 254 (411)
T 2o0r_A 177 -LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAG 254 (411)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHH
Confidence 47899999999999999999999999998887752 22222 333444568999998 78 799999999998876
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 255 l~ 256 (411)
T 2o0r_A 255 VR 256 (411)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 74
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.52 E-value=6e-14 Score=150.67 Aligned_cols=220 Identities=9% Similarity=-0.018 Sum_probs=144.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~Al 478 (719)
.+|||.+|. ..++ . +|+|.+|+.+++.............+...++++.+.+..+.. ..++++|+++|++|++.++
T Consensus 24 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~ 99 (376)
T 3ezs_A 24 RGLDLGIGE--PQFE-T-PKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFP 99 (376)
T ss_dssp CCCBCSSCC--CCSC-C-CHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHH
T ss_pred CEEEeCCCC--CCCC-C-CHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHH
Confidence 589998876 3455 5 899999999988544332211223456667777776654521 1368999999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+... +. ....+|+....+||+....+... |..
T Consensus 100 ~~~~-----~~--------------~~gd~vl~~~p~~~~~~~~~~~~-g~~---------------------------- 131 (376)
T 3ezs_A 100 SFVL-----FD--------------YQNPTIAYPNPFYQIYEGAAKFI-KAK---------------------------- 131 (376)
T ss_dssp HHHT-----TT--------------CSSCEEEEEESCCTHHHHHHHHT-TCE----------------------------
T ss_pred HHHc-----CC--------------CCCCEEEEecCCcHhHHHHHHHc-CCE----------------------------
Confidence 9872 11 00247999999999855432221 110
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
...++..+. +. + +. .+++.+.+ ++.+|++... +...|.+.
T Consensus 132 ~~~~~~~~~-------------~~----~----~~---------~l~~~~~~--------~~~~v~~~~p-~nptG~~~- 171 (376)
T 3ezs_A 132 SLLMPLTKE-------------ND----F----TP---------SLNEKELQ--------EVDLVILNSP-NNPTGRTL- 171 (376)
T ss_dssp EEEEECCGG-------------GT----S----CC---------CCCHHHHH--------HCSEEEECSS-CTTTCCCC-
T ss_pred EEEcccCCC-------------CC----c----ch---------hHHhhhcc--------CCCEEEEcCC-CCCcCCCC-
Confidence 001111100 00 0 00 12223321 2345555443 67778765
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc---------ccCCCcceeeehhccC-CCccchheeEeCHHHH
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD---------LLGCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e---------~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~ 708 (719)
|.+.+++|.++|++||++||+||++++|.++|..+... .++...++.+++|.+| +| +++|+++++++++
T Consensus 172 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~ 250 (376)
T 3ezs_A 172 SLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLL 250 (376)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCcc-ceeEEEeeCHHHH
Confidence 67789999999999999999999999998888654432 3455666779999997 78 7999999999998
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 251 ~~~~ 254 (376)
T 3ezs_A 251 EKYK 254 (376)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 75
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.52 E-value=1.1e-13 Score=148.18 Aligned_cols=218 Identities=11% Similarity=0.004 Sum_probs=152.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+|||.++. +.+ .. +|+|.+|+.++++..... .+..+...+|.++|+++++....+.++|+++|++|++.+++
T Consensus 31 ~~i~l~~~~--~~~-~~-~~~v~~a~~~~~~~~~~~---~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 31 GLVKLDAME--NPY-RL-PPALRSELAARLGEVALN---RYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TCEECCSSC--CCC-CC-CHHHHHHHHHHHHHHHTT---CSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CeeEccCCC--CCC-CC-CHHHHHHHHHHhhhhhhh---cCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 789998865 333 36 899999999998753222 22333467888889888764113689999999999999998
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +. ..+|+....+||+....+... |.. .
T Consensus 104 ~~~-----~~----------------gd~Vl~~~~~~~~~~~~~~~~-g~~----------------------------~ 133 (367)
T 3euc_A 104 AAA-----RP----------------GAKVMAPVPGFVMYAMSAQFA-GLE----------------------------F 133 (367)
T ss_dssp HTC-----CT----------------TCEEEEEESCSCCSCHHHHTT-TCE----------------------------E
T ss_pred HHc-----CC----------------CCEEEEcCCCHHHHHHHHHHc-CCe----------------------------E
Confidence 761 11 247999999999854432221 100 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++....+ ..| .+.+++.+.+ .++.+|+++.. +...|.+. |
T Consensus 134 ~~v~~~~~~-----------~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~-~ 175 (367)
T 3euc_A 134 VGVPLRADF-----------TLD------------------RGAMLAAMAE-------HQPAIVYLAYP-NNPTGNLF-D 175 (367)
T ss_dssp EEEECCTTS-----------CCC------------------HHHHHHHHHH-------HCCSEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC-----------CCC------------------HHHHHHHhhc-------cCCCEEEEcCC-CCCCCCCC-C
Confidence 111111111 001 2556777752 14567777765 78788766 6
Q ss_pred HHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
.+.+++|.++|++| |+++|+||++++|+..+.....+.++...++.+++|...+| +++|++++++++++.+..
T Consensus 176 ~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~ 250 (367)
T 3euc_A 176 AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAG-IRLGYVAGDPQWLEQLDK 250 (367)
T ss_dssp HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCS-CCEEEEEECHHHHHHHGG
T ss_pred HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccc-cCceeeeeCHHHHHHHHH
Confidence 77899999999999 99999999999997666655666666667788999995567 799999999999988764
No 76
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.52 E-value=1e-13 Score=151.55 Aligned_cols=224 Identities=11% Similarity=0.048 Sum_probs=139.2
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC--CCCCChHHHHHHHHHHhccCCC-CC-CeEEEe
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-WA-SRAYFS 467 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~--~~~~~~~~~~Lae~L~~~~~~~-~~-~rv~f~ 467 (719)
.+|+ ++|||.+|.. .+| . +|.|.+|+.++++......+ .....+....+++.+.+..+.. .. +.++++
T Consensus 34 ~~g~----~~idl~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t 105 (412)
T 2x5d_A 34 RRGE----DIIDLSMGNP--DGP-T-PPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVT 105 (412)
T ss_dssp HTTC----CCEECSSCCC--CSC-C-CHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred hcCC----CEEecCCCCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEc
Confidence 4577 8999998763 567 6 89999999999876421111 1112233344444443322421 12 489999
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcc
Q 005009 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (719)
Q Consensus 468 ~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~ 547 (719)
++|++|++.+++... .+ ..+|++...+||+....+.. .|..
T Consensus 106 ~g~~~a~~~~~~~~~-----~~----------------gd~Vl~~~p~~~~~~~~~~~-~g~~----------------- 146 (412)
T 2x5d_A 106 IGSKEGLAHLMLATL-----DH----------------GDTILVPNPSYPIHIYGAVI-AGAQ----------------- 146 (412)
T ss_dssp SCHHHHHHHHHHHHC-----CT----------------TCEEEEEESCCHHHHHHHHH-HTCE-----------------
T ss_pred CChHHHHHHHHHHhC-----CC----------------CCEEEEcCCCchhHHHHHHH-cCCE-----------------
Confidence 999999999999761 11 24799999999986544322 1110
Q ss_pred cCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-c
Q 005009 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-E 626 (719)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-E 626 (719)
...++.. . + ... ....+.+++.+. .++.+|++ .
T Consensus 147 -----------~~~~~~~----------------~-~---------~~~-~~d~~~l~~~i~--------~~~~~v~l~~ 180 (412)
T 2x5d_A 147 -----------VRSVPLV----------------P-G---------IDF-FNELERAIRESI--------PKPRMMILGF 180 (412)
T ss_dssp -----------EEEEECS----------------T-T---------SCH-HHHHHHHHHTEE--------SCCSEEEEES
T ss_pred -----------EEEeecC----------------C-c---------cCC-CCCHHHHHHhcc--------cCceEEEECC
Confidence 0011110 0 0 000 001245555553 23445555 5
Q ss_pred cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccc----cCCCcceeeehhccC-CCccchhe
Q 005009 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADL----LGCVPDIACYGKLLT-GGVIPLAA 700 (719)
Q Consensus 627 PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~----~gv~PDIvtlgK~Lg-gG~~Plsa 700 (719)
| +...|.+ .|.+++++|.++|++||+++|+||++++|.++|+ ...... .+....+.+++|.+| +| +++|+
T Consensus 181 p--~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~ 256 (412)
T 2x5d_A 181 P--SNPTAQC-VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG-WRIGF 256 (412)
T ss_dssp S--CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT-SCCEE
T ss_pred C--CCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc-cceEE
Confidence 5 5656765 4789999999999999999999999999987775 222222 233444568999998 88 69999
Q ss_pred eEeCHHHHhhhc
Q 005009 701 TLATNAVFDSFV 712 (719)
Q Consensus 701 vl~~~~i~~~~~ 712 (719)
+++++++++.+.
T Consensus 257 ~~~~~~~~~~l~ 268 (412)
T 2x5d_A 257 MVGNPELVSALA 268 (412)
T ss_dssp EEECHHHHHHHH
T ss_pred EEcCHHHHHHHH
Confidence 999999988764
No 77
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.52 E-value=2.6e-14 Score=157.49 Aligned_cols=234 Identities=11% Similarity=-0.010 Sum_probs=145.6
Q ss_pred EEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC--------CCCC-ChHHHHHHHHHHhccC--
Q 005009 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--------PENV-YEPALECAELLLQGVG-- 457 (719)
Q Consensus 389 l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~--------~~~~-~~~~~~Lae~L~~~~~-- 457 (719)
.||.++| .+.++..|+..+.++ ++.+.+++.++.....+... ..+. .....+|.++|+++++
T Consensus 30 ~y~~~~~----p~~~i~lg~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 102 (435)
T 3piu_A 30 PYHEVHN----TNGIIQMGLAENQLC---FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEI 102 (435)
T ss_dssp BCBTTTB----TTSBEECSSCCCCSS---HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcccC----CCCeEEecccccccc---HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHh
Confidence 4788888 666666666666555 57899999888765443200 0011 1112355555555443
Q ss_pred ------CCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 458 ------KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 458 ------~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
-. .+.++|+++|++|++.+++... +. ...|++.+.+||+........+|...
T Consensus 103 ~~~~~~~~-~~~v~~~~gg~~a~~~~~~~l~-----~~----------------gd~vl~~~p~~~~~~~~~~~~~g~~~ 160 (435)
T 3piu_A 103 RGNKVTFD-PNHLVLTAGATSANETFIFCLA-----DP----------------GEAVLIPTPYYPGFDRDLKWRTGVEI 160 (435)
T ss_dssp TTTSSCCC-GGGEEEEEHHHHHHHHHHHHHC-----CT----------------TCEEEEEESCCTTHHHHTTTTTCCEE
T ss_pred hCCCCCCC-HHHEEEcCChHHHHHHHHHHhc-----CC----------------CCeEEECCCccccHHHHHHHhcCCEE
Confidence 11 3689999999999999999871 11 23688888888775433221222110
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
..++... +..| .-| .+.+++.+.+.
T Consensus 161 ----------------------------~~~~~~~-----------------~~~~--~~d--------~~~l~~~l~~~ 185 (435)
T 3piu_A 161 ----------------------------VPIHCTS-----------------SNGF--QIT--------ETALEEAYQEA 185 (435)
T ss_dssp ----------------------------EEEECCG-----------------GGTS--CCC--------HHHHHHHHHHH
T ss_pred ----------------------------EEeeCCC-----------------ccCC--cCC--------HHHHHHHHHHH
Confidence 0111110 0000 001 24455555421
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccCCC---------
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCV--------- 681 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~gv~--------- 681 (719)
. ....++.+|++++. +...|.+. +.+.+++|.++|++||++||+||++++++++|+.+.. ..++..
T Consensus 186 ~--~~~~~~~~v~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 261 (435)
T 3piu_A 186 E--KRNLRVKGVLVTNP-SNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEV 261 (435)
T ss_dssp H--HTTCCEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CG
T ss_pred H--hcCCCeEEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCC
Confidence 0 12346888888876 78788754 6778999999999999999999999998888875432 222212
Q ss_pred cc----eeeehhccC-CCccchheeEe-CHHHHhhh
Q 005009 682 PD----IACYGKLLT-GGVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 682 PD----IvtlgK~Lg-gG~~Plsavl~-~~~i~~~~ 711 (719)
+| +.+++|++| +| +++|++++ ++++.+.+
T Consensus 262 ~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~ 296 (435)
T 3piu_A 262 WQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAA 296 (435)
T ss_dssp GGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHH
T ss_pred CCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHH
Confidence 55 558999998 88 79999999 56676655
No 78
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.51 E-value=9.6e-14 Score=151.32 Aligned_cols=228 Identities=10% Similarity=-0.058 Sum_probs=141.5
Q ss_pred eeeeccccccccCCCCC-CCHHHHHHHHHhhhhcccccCCCC-CChHHHHHHHHHHhccCCC-----CCCeEEE--eCCh
Q 005009 400 QQFDACASWWTQGPDAT-LQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKG-----WASRAYF--SDNG 470 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~-~hP~V~~Av~~q~~~~~~~~~~~~-~~~~~~~Lae~L~~~~~~~-----~~~rv~f--~~SG 470 (719)
.++||.+|......||. ..|.|.+|+.+++....... .+ ......+|.+.|+++++.. ..++++| +++|
T Consensus 31 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg 108 (412)
T 1ajs_A 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNH--EYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGG 108 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CceeeccceecCCCCCccccHHHHHHHHHhhhChhhcc--CCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCc
Confidence 78999888754555554 14899999998873211110 11 1222345666666654210 1368999 9999
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCC
Q 005009 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 471 sEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++|++.+++++ +.+. .|. ...+.+|++...+||+....+... |..
T Consensus 109 ~~a~~~~~~~~-~~~~--~g~-----------~~~~d~Vl~~~p~y~~~~~~~~~~-g~~-------------------- 153 (412)
T 1ajs_A 109 TGALRIGAEFL-ARWY--NGT-----------NNKDTPVYVSSPTWENHNGVFTTA-GFK-------------------- 153 (412)
T ss_dssp HHHHHHHHHHH-HHHS--SSS-----------SCCCSCEEEEESCCTHHHHHHHHT-TCS--------------------
T ss_pred HHHHHHHHHHH-HHhC--cCc-----------CCCCCeEEEcCCCcHHHHHHHHHc-CCc--------------------
Confidence 99999999876 3332 110 000147999999999965433222 110
Q ss_pred CcccccCcceeecC--cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEcc
Q 005009 551 PTVFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEP 627 (719)
Q Consensus 551 p~~~~~~~~~~~~~--P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAv-IvEP 627 (719)
....++. ++.+ .-| .+.+++.+.+ . ..+..++ +..|
T Consensus 154 -------~~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~----~-~~~~~~v~~~~p 192 (412)
T 1ajs_A 154 -------DIRSYRYWDTEKR---------------------GLD--------LQGFLSDLEN----A-PEFSIFVLHACA 192 (412)
T ss_dssp -------CEEEEECEETTTT---------------------EEC--------HHHHHHHHHH----S-CTTCEEEEESSS
T ss_pred -------eeEEEeeecCCCC---------------------ccC--------HHHHHHHHHh----C-CCCcEEEEECCC
Confidence 0001111 0001 001 2556667763 1 2234444 4556
Q ss_pred ccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC---ccccccccCCCcc----eeeehhccCC-Cccchh
Q 005009 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLLGCVPD----IACYGKLLTG-GVIPLA 699 (719)
Q Consensus 628 Viqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG---~~~a~e~~gv~PD----IvtlgK~Lgg-G~~Pls 699 (719)
+...|. ..+.+++++|.++|++||+++|+||++++|++.| .++....+...+| +.+++|.+|. | +++|
T Consensus 193 --~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG 268 (412)
T 1ajs_A 193 --HNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVG 268 (412)
T ss_dssp --CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEE
T ss_pred --CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCC-cceE
Confidence 444565 5689999999999999999999999999999987 5555554433455 4589999998 9 7999
Q ss_pred eeEe---CHHHHh
Q 005009 700 ATLA---TNAVFD 709 (719)
Q Consensus 700 avl~---~~~i~~ 709 (719)
++++ ++++++
T Consensus 269 ~~~~~~~~~~~~~ 281 (412)
T 1ajs_A 269 NLTVVAKEPDSIL 281 (412)
T ss_dssp EEEEECSSHHHHH
T ss_pred EEEEecCCHHHHH
Confidence 9999 887433
No 79
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.51 E-value=1.1e-13 Score=149.50 Aligned_cols=215 Identities=12% Similarity=0.012 Sum_probs=136.7
Q ss_pred eeeeccccccccCCC--CCCCHHHHHHHHHhhhhcccccCCCC-CChHHHHHHHHHHhccCC-C----CCCeEEE--eCC
Q 005009 400 QQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGK-G----WASRAYF--SDN 469 (719)
Q Consensus 400 ~yLD~~sg~~~~~lG--H~~hP~V~~Av~~q~~~~~~~~~~~~-~~~~~~~Lae~L~~~~~~-~----~~~rv~f--~~S 469 (719)
.+|||.+|.+..+.| +. +|+|.+|+.++++..... .+ ......+|.+.|++++.. + ..++++| +++
T Consensus 27 ~~i~l~~g~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~---~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g 102 (396)
T 2q7w_A 27 GKINLGIGVYKDETGKTPV-LTSVKKAEQYLLENETTK---NYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG 102 (396)
T ss_dssp -CEESSCCSCCCTTSCCCC-CHHHHHHHHHHHHHCCCC---CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred CceecccccccCCCCCccC-cHHHHHHHHhhcCccccc---CCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEeccc
Confidence 899999998766666 56 799999999987653111 11 122234555555554411 0 0257888 999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccC
Q 005009 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 470 GsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
|++|++.+++++ +.+. . ..+|+....+||+....+.... ..
T Consensus 103 ~~~a~~~~~~~~-~~~~--~----------------gd~Vl~~~p~y~~~~~~~~~~g-~~------------------- 143 (396)
T 2q7w_A 103 GTGALRVAADFL-AKNT--S----------------VKRVWVSNPSWPNHKSVFNSAG-LE------------------- 143 (396)
T ss_dssp HHHHHHHHHHHH-HHHS--C----------------CCEEEEEESCCTHHHHHHHHTT-CE-------------------
T ss_pred chhhHHHHHHHH-HHhC--C----------------CCEEEEcCCCchhHHHHHHHcC-Cc-------------------
Confidence 999999999987 3332 1 2379999999999654432221 10
Q ss_pred CCcccccCcceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 005009 550 PPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP 627 (719)
...++.. +.+ .-| .+.+++.+.+ ...+..++++..
T Consensus 144 ---------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~v~~~~ 180 (396)
T 2q7w_A 144 ---------VREYAYYDAENH---------------------TLD--------FDALINSLNE-----AQAGDVVLFHGC 180 (396)
T ss_dssp ---------EEEEECEETTTT---------------------EEC--------HHHHHHHHTT-----CCTTCEEEEECS
T ss_pred ---------eEEEecccCCCC---------------------CcC--------HHHHHHHHHh-----CCCCCEEEEeCC
Confidence 0011110 000 001 3567777753 222344454443
Q ss_pred ccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC--ccccccccCCCcc----eeeehhccC-CCccchhe
Q 005009 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLLGCVPD----IACYGKLLT-GGVIPLAA 700 (719)
Q Consensus 628 Viqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG--~~~a~e~~gv~PD----IvtlgK~Lg-gG~~Plsa 700 (719)
. +...|. ..+.+++++|.++|++||+++|+||++++|++.| .++....+...+| +.+++|.+| .| +++|+
T Consensus 181 p-~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~ 257 (396)
T 2q7w_A 181 C-HNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYN-ERVGA 257 (396)
T ss_dssp S-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG-GCCEE
T ss_pred C-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccc-cccce
Confidence 3 555666 4578999999999999999999999999998765 4445544433334 347899999 79 69999
Q ss_pred eEe
Q 005009 701 TLA 703 (719)
Q Consensus 701 vl~ 703 (719)
+++
T Consensus 258 ~~~ 260 (396)
T 2q7w_A 258 CTL 260 (396)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
No 80
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.50 E-value=1.3e-13 Score=149.20 Aligned_cols=221 Identities=12% Similarity=0.028 Sum_probs=141.9
Q ss_pred eeeeccccccccCCC--CCCCHHHHHHHHHhhhhcccccCCCCC-ChHHHHHHHHHHhcc-CCC-CCCeEEE--eCChHH
Q 005009 400 QQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGV-GKG-WASRAYF--SDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lG--H~~hP~V~~Av~~q~~~~~~~~~~~~~-~~~~~~Lae~L~~~~-~~~-~~~rv~f--~~SGsE 472 (719)
.+|||.+|......| +. +|+|.+|+.++++..... .+. .....+|.+.|++++ +.+ ..++++| +++|++
T Consensus 27 ~~i~l~~g~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~---~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~ 102 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTPI-MRAVHAAEQRMLETETTK---TYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTG 102 (394)
T ss_dssp TCEECCCCSCCCTTSCCCC-CHHHHHHHHHHHHHCCCC---CCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHH
T ss_pred cccccccceeeCCCCCccC-cHHHHHHHHHhcCCcccC---CCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchh
Confidence 789999987766666 67 899999999987642111 111 111234555555443 210 1368999 999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++++ +.+. .| .+|++...+||+....+.... ..
T Consensus 103 a~~~~~~~~-~~~~--~g----------------d~vl~~~p~~~~~~~~~~~~g-~~---------------------- 140 (394)
T 2ay1_A 103 ALRQALELA-RMAN--PD----------------LRVFVSDPTWPNHVSIMNFMG-LP---------------------- 140 (394)
T ss_dssp HHHHHHHHH-HHHC--TT----------------CCEEEEESCCHHHHHHHHHHT-CC----------------------
T ss_pred HHHHHHHHH-HhcC--CC----------------CEEEEcCCCChhHHHHHHHcC-Cc----------------------
Confidence 999999988 4332 11 369999999999654433221 10
Q ss_pred ccccCcceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 553 VFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 553 ~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.. +.+ .-| .+.+++.+.+ .+.+.+++++... +
T Consensus 141 ------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~~~~~~~-~ 179 (394)
T 2ay1_A 141 ------VQTYRYFDAETR---------------------GVD--------FEGMKADLAA-----AKKGDMVLLHGCC-H 179 (394)
T ss_dssp ------EEEEECEETTTT---------------------EEC--------HHHHHHHHHT-----CCTTCEEEEESSS-C
T ss_pred ------eEEEecccccCC---------------------ccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-C
Confidence 0011110 000 001 2567777763 2234566776765 7
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC--ccccccccC-CCccee---eehhccC-CCccchheeEe
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLLG-CVPDIA---CYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG--~~~a~e~~g-v~PDIv---tlgK~Lg-gG~~Plsavl~ 703 (719)
...|. ..|.+++++|.++|++||+++|+||++++|++.| ..+....+. ..+|++ +++|.+| +| +++|++++
T Consensus 180 nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~ 257 (394)
T 2ay1_A 180 NPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLA 257 (394)
T ss_dssp TTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEE
T ss_pred CCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC-CccceEEE
Confidence 77776 4578999999999999999999999999998765 333333221 234533 7899999 78 79999998
Q ss_pred ---CHHHHh
Q 005009 704 ---TNAVFD 709 (719)
Q Consensus 704 ---~~~i~~ 709 (719)
++++++
T Consensus 258 ~~~~~~~~~ 266 (394)
T 2ay1_A 258 LCADAATRE 266 (394)
T ss_dssp ECSSHHHHH
T ss_pred EeCCHHHHH
Confidence 666543
No 81
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.50 E-value=1.7e-13 Score=152.58 Aligned_cols=226 Identities=9% Similarity=0.078 Sum_probs=149.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-----cccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-----~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.+|||.+|.... -+|. ++++.+|+.++++... +.. .....+....+++.+.+..+....+.++++++|++|+
T Consensus 77 ~~i~l~~g~p~~-~~~p-~~~v~~a~~~~l~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 77 DIISLAGGLPNP-KTFP-KEIIRDILVEIMEKYADKALQYGT-TKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp SSEECCCCCCCG-GGSC-HHHHHHHHHHHHHHSHHHHHSCCC-TTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CcEeCCCCCCCc-hhCC-HHHHHHHHHHHHHhhhHHHhCCCC-CCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 689999887654 3588 8999999999887632 111 1112233444444443332521136899999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
+.+++... .. ...|+..+.+|||....... .|.
T Consensus 154 ~~~~~~l~-----~~----------------Gd~Vlv~~p~y~~~~~~~~~-~g~------------------------- 186 (448)
T 3aow_A 154 DLIGRVFL-----NP----------------GDIVVVEAPTYLAALQAFNF-YEP------------------------- 186 (448)
T ss_dssp HHHHHHHC-----CT----------------TCEEEEEESCCHHHHHHHHT-TCC-------------------------
T ss_pred HHHHHHHc-----CC----------------CCEEEEeCCChHHHHHHHHH-cCC-------------------------
Confidence 99999871 11 24799999999985443221 111
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
..+++|. +. + +-| .+.|++.+.... ....++.+|++.|..+.-.|
T Consensus 187 -----~~~~v~~--------------~~-~-----g~d--------~~~L~~~l~~~~--~~~~~~k~v~~~~~~~NPtG 231 (448)
T 3aow_A 187 -----QYIQIPL--------------DD-E-----GMK--------VEILEEKLKELK--SQGKKVKVVYTVPTFQNPAG 231 (448)
T ss_dssp -----EEEEEEE--------------ET-T-----EEC--------HHHHHHHHHHHH--HTTCCEEEEEECCSSCTTTC
T ss_pred -----EEEEecc--------------CC-C-----CCC--------HHHHHHHHhhhh--ccCCCCeEEEECCCCCCCcC
Confidence 0111110 00 0 001 245666664100 01236788877765356667
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----cccccccCCCcceeeehhccCCCccchheeEeCHHHHhh
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~ 710 (719)
.+ .+.+++++|.++|++||+++|+||++++|...|. ++..+..+...++.+++|.++.| +++|++++++++++.
T Consensus 232 ~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~ 309 (448)
T 3aow_A 232 VT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPG-FRIGWMVGDPGIIRK 309 (448)
T ss_dssp CC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGG-GCCEEEEECHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcccc-ccEEEEEeCHHHHHH
Confidence 65 5789999999999999999999999998877665 33444445567788999999989 799999999999887
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 310 l~ 311 (448)
T 3aow_A 310 ME 311 (448)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 82
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.50 E-value=1.6e-13 Score=149.97 Aligned_cols=219 Identities=6% Similarity=-0.007 Sum_probs=141.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC--CCCChHHHHHHHHHHhccCCC-C-CCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP--ENVYEPALECAELLLQGVGKG-W-ASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~--~~~~~~~~~Lae~L~~~~~~~-~-~~rv~f~~SGsEA~E 475 (719)
++|||.+|.. .+| . +|+|.+|+.++++........ ....+....+++.+.+..+.. . .+.++|+++|++|++
T Consensus 48 ~~idl~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~ 123 (404)
T 2o1b_A 48 PLINMAVGIP--DGP-T-PQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLV 123 (404)
T ss_dssp CCEECCCCSC--SSC-C-CHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHH
T ss_pred CEEecCCcCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHH
Confidence 8999998765 567 5 899999999988642111111 122333444444444433532 0 158999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++... .. ..+|++...+||+....+.. .|..
T Consensus 124 ~~~~~l~-----~~----------------gd~Vl~~~p~y~~~~~~~~~-~g~~------------------------- 156 (404)
T 2o1b_A 124 AVPTCVI-----NP----------------GDYVLLPDPGYTDYLAGVLL-ADGK------------------------- 156 (404)
T ss_dssp HHHHHHC-----CT----------------TCEEEEEESCCSSHHHHHHH-TTCE-------------------------
T ss_pred HHHHHhc-----CC----------------CCEEEEcCCCchhHHHHHHH-CCCE-------------------------
Confidence 9999761 11 24799999999996544322 2110
Q ss_pred cCcceeecCc-chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 556 YNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 556 ~~~~~~~~~P-~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
...++.. +.+. .|. +.+++.+. .++.+|+++.. +...|
T Consensus 157 ---~~~v~~~~~~~~-----------~d~------------------~~l~~~l~--------~~~~~v~l~~p-~nptG 195 (404)
T 2o1b_A 157 ---PVPLNLEPPHYL-----------PDW------------------SKVDSQII--------DKTKLIYLTYP-NNPTG 195 (404)
T ss_dssp ---EEEEECCTTTCC-----------CCG------------------GGSCHHHH--------HHEEEEEECSS-CTTTC
T ss_pred ---EEEeccCcccCc-----------CCH------------------HHHHHhhc--------cCceEEEEcCC-CCCCC
Confidence 0011111 0110 111 22334443 25678888754 66678
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc---cccc-ccCCCcceeeehhccC-CCccchheeEeCHHHHh
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~---~a~e-~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~ 709 (719)
.+ .|.+++++|.++|++||+++|+||++++|.++|+. +... .++....+.+++|.+| +| +++|++++++++++
T Consensus 196 ~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~ 273 (404)
T 2o1b_A 196 ST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQ 273 (404)
T ss_dssp CC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHH
T ss_pred cc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCch-hheEeEecCHHHHH
Confidence 76 47899999999999999999999999998776642 2221 1233345568999998 78 79999999999987
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 274 ~l~ 276 (404)
T 2o1b_A 274 ALK 276 (404)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 83
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.50 E-value=2.7e-13 Score=145.57 Aligned_cols=209 Identities=12% Similarity=0.029 Sum_probs=139.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.++||.++.. .+|+ +|++.+|+.++++...... ......+...++++.+.+..+.+ ..+.++++++|++|++.+
T Consensus 30 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~ 105 (370)
T 2z61_A 30 KVIHLEIGEP--DFNT--PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFA 105 (370)
T ss_dssp CCEECCCCSC--SSCC--CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHH
Confidence 8899988664 5665 6999999999987532111 11122344455555554422210 136899999999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++.+. .. ..+|+..+.+||+....+.. .|.
T Consensus 106 ~~~~~-----~~----------------gd~vl~~~p~~~~~~~~~~~-~g~---------------------------- 135 (370)
T 2z61_A 106 LSSII-----DD----------------GDEVLIQNPCYPCYKNFIRF-LGA---------------------------- 135 (370)
T ss_dssp HHHHC-----CT----------------TCEEEEESSCCTHHHHHHHH-TTC----------------------------
T ss_pred HHHhc-----CC----------------CCEEEEeCCCchhHHHHHHH-cCC----------------------------
Confidence 99871 11 24799999999985543211 110
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
..+.+| .| .+.+++.+. .++.+|+++.. +...|.+.
T Consensus 136 --~~~~v~---------------~d------------------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~ 171 (370)
T 2z61_A 136 --KPVFCD---------------FT------------------VESLEEALS--------DKTKAIIINSP-SNPLGEVI 171 (370)
T ss_dssp --EEEEEC---------------SS------------------HHHHHHHCC--------SSEEEEEEESS-CTTTCCCC
T ss_pred --EEEEeC---------------CC------------------HHHHHHhcc--------cCceEEEEcCC-CCCcCccc
Confidence 011111 01 245666653 25677888776 78888887
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc-CC-Ccce--eeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GC-VPDI--ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~-gv-~PDI--vtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+.+ |.++|++||+++|+||+++++.+.|+......+ +. ..|+ .+++|.+| .| +++|++++++++++.+.
T Consensus 172 ~~~-----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~ 245 (370)
T 2z61_A 172 DRE-----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTG-WRIGYVISNDEIIEAIL 245 (370)
T ss_dssp CHH-----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred CHH-----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCcc-ceEEEEEECHHHHHHHH
Confidence 633 999999999999999999998777765444333 12 2344 47999998 78 69999999999887663
No 84
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.49 E-value=1.7e-13 Score=149.71 Aligned_cols=221 Identities=12% Similarity=0.039 Sum_probs=143.9
Q ss_pred CCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCCh
Q 005009 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (719)
Q Consensus 393 dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SG 470 (719)
+|+ ++|||.++.. .+| . +|++.+|+ ++++..... .......+...++++.+.+..+.+ ..+.+++++||
T Consensus 41 ~g~----~~i~l~~~~~--~~~-~-~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 111 (409)
T 2gb3_A 41 RGV----RIHHLNIGQP--DLK-T-PEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGG 111 (409)
T ss_dssp TTC----EEEECSSCCC--CSC-C-CTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred cCC----CEEeccCCCC--CCC-C-CHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence 567 8999988765 455 4 78999999 888653211 111122344555565555433211 13689999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCC
Q 005009 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 471 sEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++|++.+++.+. .. ..+|+....+||+.... +...|..
T Consensus 112 t~a~~~~~~~~~-----~~----------------gd~Vl~~~~~~~~~~~~-~~~~g~~-------------------- 149 (409)
T 2gb3_A 112 SEAILFSFAVIA-----NP----------------GDEILVLEPFYANYNAF-AKIAGVK-------------------- 149 (409)
T ss_dssp HHHHHHHHHHHC-----CT----------------TCEEEEEESCCTHHHHH-HHHHTCE--------------------
T ss_pred HHHHHHHHHHhC-----CC----------------CCEEEEcCCCchhHHHH-HHHcCCE--------------------
Confidence 999999999871 11 24799999999986543 2222210
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.... ++ +.. .+.|++.+. .++.+|+++.. +
T Consensus 150 --------~~~v~~~~~-------------~~----~~~-----------~~~l~~~l~--------~~~~~v~~~~p-~ 184 (409)
T 2gb3_A 150 --------LIPVTRRME-------------EG----FAI-----------PQNLESFIN--------ERTKGIVLSNP-C 184 (409)
T ss_dssp --------EEEEECCGG-------------GT----SCC-----------CTTGGGGCC--------TTEEEEEEESS-C
T ss_pred --------EEEeccCCC-------------CC----Ccc-----------HHHHHHhhC--------cCCeEEEECCC-C
Confidence 001111100 00 000 022333332 25778888876 7
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Cccee--eehhccC-CCccchheeEeCH-
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLT-GGVIPLAATLATN- 705 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIv--tlgK~Lg-gG~~Plsavl~~~- 705 (719)
...|.+. |.+++++|.++|++||++||+||++++++++|+++.. ..++ ..|++ +++|.+| +| +++|++++++
T Consensus 185 nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~ 261 (409)
T 2gb3_A 185 NPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACG-ARVGCLITRNE 261 (409)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCH
T ss_pred CCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCcc-ceEEEEEECcH
Confidence 8788764 6899999999999999999999999998887765543 2233 35776 7899998 78 7999999999
Q ss_pred HHHhhhc
Q 005009 706 AVFDSFV 712 (719)
Q Consensus 706 ~i~~~~~ 712 (719)
++++.+.
T Consensus 262 ~l~~~l~ 268 (409)
T 2gb3_A 262 ELISHAM 268 (409)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 85
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.49 E-value=3.5e-13 Score=145.55 Aligned_cols=219 Identities=14% Similarity=0.021 Sum_probs=144.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCCChHHHHHHHHHHhccCCC-CCCe-EEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKG-WASR-AYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~-~~~r-v~f~~SGsEA~E~ 476 (719)
.++||.+|.. .+| . +|++.+|+.++++...... ......+....+++.+.+..+.. ..++ ++++++|++|++.
T Consensus 27 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 27 DVISLGIGEP--DFD-T-PQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SCEECCCCSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CeEecCCCCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 6788887653 456 5 8999999999987632211 11122344555565555433410 1357 9999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++.+. .. ..+|+..+.+|||....+ ...|..
T Consensus 103 ~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~~-~~~g~~-------------------------- 134 (389)
T 1gd9_A 103 GLSAFL-----KD----------------GEEVLIPTPAFVSYAPAV-ILAGGK-------------------------- 134 (389)
T ss_dssp HHTTTC-----CT----------------TCEEEEEESCCTTHHHHH-HHHTCE--------------------------
T ss_pred HHHHhC-----CC----------------CCEEEEcCCCchhHHHHH-HHCCCE--------------------------
Confidence 998761 11 247999999999954332 222210
Q ss_pred CcceeecCcc--hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 557 NSKWILSLPE--WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 557 ~~~~~~~~P~--~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
...++... .+ . -| .+.+++.+. .++.+|+++.. +...|
T Consensus 135 --~~~v~~~~~~~~------------~---------~d--------~~~l~~~l~--------~~~~~v~~~~~-~nptG 174 (389)
T 1gd9_A 135 --PVEVPTYEEDEF------------R---------LN--------VDELKKYVT--------DKTRALIINSP-CNPTG 174 (389)
T ss_dssp --EEEEECCGGGTT------------C---------CC--------HHHHHHHCC--------TTEEEEEEESS-CTTTC
T ss_pred --EEEeccCCccCC------------C---------CC--------HHHHHHhcC--------cCceEEEEECC-CCCCC
Confidence 01111110 00 0 01 255666664 25678888775 77778
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-ccccccc-CC-Cccee--eehhccC-CCccchheeEeCHHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GC-VPDIA--CYGKLLT-GGVIPLAATLATNAVF 708 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~-gv-~PDIv--tlgK~Lg-gG~~Plsavl~~~~i~ 708 (719)
.+ .|.+.+++|.++|++||+++|+||++++|.+.|+ ......+ +. ..|++ +++|.+| .| +++|+++++++++
T Consensus 175 ~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~ 252 (389)
T 1gd9_A 175 AV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWII 252 (389)
T ss_dssp CC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHH
T ss_pred cC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcc-cceEEEEECHHHH
Confidence 76 4788999999999999999999999999988776 3333333 22 34644 7999998 78 7999999999998
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 253 ~~l~ 256 (389)
T 1gd9_A 253 ERMV 256 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 86
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.49 E-value=1.8e-13 Score=151.78 Aligned_cols=183 Identities=12% Similarity=0.023 Sum_probs=115.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|||+.+++++ ++|.+++.+++..... .+ ...+...+|.++|+++++ .++++|++||+||++.|++
T Consensus 44 ~ylD~~~~~~~--------~~v~~a~~~~~~~~~~-~y--~~~~~~~~l~~~la~~~~---~~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 44 VYIDLLTDSGT--------NAMSDHQWAAMITGDE-AY--AGSRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFP 109 (467)
T ss_dssp CSEECSCSSSC--------CCEEHHHHHHHHTCCC-CS--SSCHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHH
T ss_pred eeeecccCcCC--------HHHHHHHHHHHhhccc-cc--ccCccHHHHHHHHHHHcC---CCcEEEcCCcHHHHHHHHH
Confidence 89999887654 6778887777654221 11 124567899999999987 3689999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcc-cCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syH-G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
.+ +.+....|. .+..||.. .+| +.+..++..+|...... +...
T Consensus 110 ~~-~~~~~~~Gd-------------~~~~viv~--~~~~~~~~~~~~~~g~~~~~~----------------~~~~---- 153 (467)
T 1ax4_A 110 VL-LKYKQKEGK-------------AKNPVFIS--NFHFDTTAAHVELNGCKAINI----------------VTEK---- 153 (467)
T ss_dssp HH-HHHHHHTTC-------------CSSCEEEE--SSCCHHHHHHHHHTTCEEEEC----------------BCGG----
T ss_pred HH-HHhhccCCC-------------ccceEEEe--ccccchhhHHHhccCCceecc----------------cccc----
Confidence 98 443211221 01114444 555 65565665554321100 0000
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
.++.... .+|+. .-| .+.|++.+.+ .+.+++++|++||+ ++.+|..++
T Consensus 154 ----~~~~~~~--------~~~~~-------~~d--------~~~le~~i~~----~~~~~~~~vi~~~~-~np~gG~~~ 201 (467)
T 1ax4_A 154 ----AFDSETY--------DDWKG-------DFD--------IKKLKENIAQ----HGADNIVAIVSTVT-CNSAGGQPV 201 (467)
T ss_dssp ----GGCTTSC--------CTTTT-------CBC--------HHHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCC
T ss_pred ----ccccccc--------CCccc-------ccC--------HHHHHHHHHh----cCCCCeeEEEEecc-ccCCCccCC
Confidence 0000000 00100 001 3567777763 11247999999998 888755677
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecccc
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFT 664 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqT 664 (719)
+.+++++|+++|++||++||+||+|.
T Consensus 202 ~~~~l~~i~~la~~~gi~li~De~~~ 227 (467)
T 1ax4_A 202 SMSNLKEVYEIAKQHGIFVVMDSARF 227 (467)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred ChhHHHHHHHHHHHcCCEEEEEchhh
Confidence 89999999999999999999999975
No 87
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.49 E-value=1e-13 Score=152.38 Aligned_cols=228 Identities=13% Similarity=0.113 Sum_probs=145.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc--ccC--CCCCChHHHHHHHHHHhccC---CCCCCeEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMF--PENVYEPALECAELLLQGVG---KGWASRAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~--~~~--~~~~~~~~~~Lae~L~~~~~---~~~~~rv~f~~SGsE 472 (719)
.+|||.+|... ..||. +|+|.+|+.++++.... ..+ .....+...++++.+.+..+ -. .+.++|+++|++
T Consensus 44 ~~idl~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-~~~v~~t~G~~~ 120 (425)
T 1vp4_A 44 DAISFGGGVPD-PETFP-RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD-EDNLIFTVGSQQ 120 (425)
T ss_dssp TCEECCCCSCC-GGGSC-HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC-GGGEEEEEHHHH
T ss_pred CceeCCCCCCC-cccCC-HHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC-cccEEEeccHHH
Confidence 78999998764 45899 99999999999876321 111 11223445555555544324 22 368999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++... .. ..+|++...+||+....+.. .|..
T Consensus 121 al~~~~~~l~-----~~----------------gd~Vl~~~p~y~~~~~~~~~-~g~~---------------------- 156 (425)
T 1vp4_A 121 ALDLIGKLFL-----DD----------------ESYCVLDDPAYLGAINAFRQ-YLAN---------------------- 156 (425)
T ss_dssp HHHHHHHHHC-----CT----------------TCEEEEEESCCHHHHHHHHT-TTCE----------------------
T ss_pred HHHHHHHHhC-----CC----------------CCEEEEeCCCcHHHHHHHHH-cCCE----------------------
Confidence 9999999761 11 24799999999986543322 1110
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
.+.+|. +. + .-| .+.+++.+.+......+.++++|++.|..+..
T Consensus 157 --------~~~v~~--------------~~-~-----~~d--------~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~np 200 (425)
T 1vp4_A 157 --------FVVVPL--------------ED-D-----GMD--------LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200 (425)
T ss_dssp --------EEEEEE--------------ET-T-----EEC--------HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred --------EEEecc--------------CC-C-----CCC--------HHHHHHHHHhhhhcccCCCceEEEECCCCCCC
Confidence 011110 00 0 001 24455555420000012367787544332666
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCC---cceeeehhccCCCccchheeEeCHHHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCV---PDIACYGKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~---PDIvtlgK~LggG~~Plsavl~~~~i~ 708 (719)
.|.+ .|.+++++|.++|++||+++|+||++++|.+.|.. .....++.. ..+.+++|.+|+| +++|+++++++++
T Consensus 201 tG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~ 278 (425)
T 1vp4_A 201 AGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFI 278 (425)
T ss_dssp TCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHH
T ss_pred CCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccc-cceEEEeeCHHHH
Confidence 6765 47899999999999999999999999998877763 333333222 2345899999988 7999999999998
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 279 ~~l~ 282 (425)
T 1vp4_A 279 RKIV 282 (425)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 88
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.49 E-value=2.6e-13 Score=144.42 Aligned_cols=223 Identities=9% Similarity=-0.020 Sum_probs=154.0
Q ss_pred EEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEe
Q 005009 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467 (719)
Q Consensus 388 ~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~ 467 (719)
++++.+|+ ++|||.++. ..++ . +|+|.+|+.++++... .+..+...+|.++|+++.+-. .+.++|+
T Consensus 9 ~~~~~~~~----~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~-----~y~~~~~~~l~~~la~~~~~~-~~~i~~~ 74 (354)
T 3ly1_A 9 AFTAPSTD----NPIRINFNE--NPLG-M-SPKAQAAARDAVVKAN-----RYAKNEILMLGNKLAAHHQVE-APSILLT 74 (354)
T ss_dssp CCCCCCSS----SCEECSSCC--CSSC-C-CHHHHHHHHHTGGGTT-----SCCHHHHHHHHHHHHHHTTSC-GGGEEEE
T ss_pred cccCCCCC----ceEEccCCC--CCCC-C-CHHHHHHHHHHHhhCc-----CCCCCchHHHHHHHHHHhCCC-hHHEEEe
Confidence 56788898 999999865 3444 5 8999999999987532 233456678999999988643 3689999
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcc
Q 005009 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (719)
Q Consensus 468 ~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~ 547 (719)
++|++|++.+++... +. ..+|+....+||+....+.. .|..
T Consensus 75 ~g~~~a~~~~~~~l~-----~~----------------gd~vl~~~~~~~~~~~~~~~-~g~~----------------- 115 (354)
T 3ly1_A 75 AGSSEGIRAAIEAYA-----SL----------------EAQLVIPELTYGDGEHFAKI-AGMK----------------- 115 (354)
T ss_dssp SHHHHHHHHHHHHHC-----CT----------------TCEEEEESSSCTHHHHHHHH-TTCE-----------------
T ss_pred CChHHHHHHHHHHHh-----CC----------------CCeEEECCCCchHHHHHHHH-cCCE-----------------
Confidence 999999999999761 11 24788888888885433221 1110
Q ss_pred cCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 005009 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (719)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP 627 (719)
...++....+ .-| .+.+++.+.+ ..++.+|+++.
T Consensus 116 -----------~~~~~~~~~~---------------------~~d--------~~~l~~~l~~------~~~~~~v~l~~ 149 (354)
T 3ly1_A 116 -----------VTKVKMLDNW---------------------AFD--------IEGLKAAVAA------YSGPSIVYLVN 149 (354)
T ss_dssp -----------EEEECCCTTS---------------------CCC--------HHHHHHHHHT------CSSCEEEEEES
T ss_pred -----------EEEecCCCCC---------------------CCC--------HHHHHHHhcc------CCCCCEEEEeC
Confidence 0011111000 001 3567777762 13567777776
Q ss_pred ccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc----ccc-CCCcceeeehhccC-CCccchhee
Q 005009 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA----DLL-GCVPDIACYGKLLT-GGVIPLAAT 701 (719)
Q Consensus 628 Viqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~----e~~-gv~PDIvtlgK~Lg-gG~~Plsav 701 (719)
. +...|.+. |.+.+++|.++| +||+++|+||++++|++.|..... ..+ +....+.+++|.+| .| +++|++
T Consensus 150 p-~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~ 225 (354)
T 3ly1_A 150 P-NNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG-MRVGYA 225 (354)
T ss_dssp S-CTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG-GCCEEE
T ss_pred C-CCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh-hhheee
Confidence 5 77778766 566677777777 799999999999999887753221 222 33444558999998 78 799999
Q ss_pred EeCHHHHhhhcC
Q 005009 702 LATNAVFDSFVG 713 (719)
Q Consensus 702 l~~~~i~~~~~~ 713 (719)
++++++.+.+..
T Consensus 226 ~~~~~~~~~~~~ 237 (354)
T 3ly1_A 226 VAHPTVIALMGR 237 (354)
T ss_dssp ECCHHHHHHHGG
T ss_pred ecCHHHHHHHHH
Confidence 999999988764
No 89
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.48 E-value=3.7e-13 Score=144.83 Aligned_cols=215 Identities=13% Similarity=0.006 Sum_probs=141.8
Q ss_pred eeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc------cCCCCCCeEEEeCChHHHHH
Q 005009 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG------VGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 402 LD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~------~~~~~~~rv~f~~SGsEA~E 475 (719)
|||.++.. .+| . +|++.+|+.+++++..... ..+......+|.+.|+++ .+-. .+.++|+++|++|++
T Consensus 33 idl~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 33 IRLNTNEN--PYP-P-SEALVADLVATVDKIATEL-NRYPERDAVELRDELAAYITKQTGVAVT-RDNLWAANGSNEILQ 106 (369)
T ss_dssp EECSSCCC--CSC-C-CHHHHHHHHHHHHHHGGGT-TSCCCTTCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHH
T ss_pred eeccCCCC--CCC-C-CHHHHHHHHHHHHhccccc-ccCCCccHHHHHHHHHHhhhhcccCCCC-hHhEEECCChHHHHH
Confidence 78877654 466 5 8999999999987642111 112222223566666665 3322 368999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++... +. ..+|+....+||+....+.. .|..
T Consensus 107 ~~~~~l~-----~~----------------gd~Vl~~~~~y~~~~~~~~~-~g~~------------------------- 139 (369)
T 3cq5_A 107 QLLQAFG-----GP----------------GRTALGFQPSYSMHPILAKG-THTE------------------------- 139 (369)
T ss_dssp HHHHHHC-----ST----------------TCEEEEEESSCTHHHHHHHH-TTCE-------------------------
T ss_pred HHHHHhc-----CC----------------CCEEEEcCCChHHHHHHHHH-cCCE-------------------------
Confidence 9998771 11 24799999999986543222 1110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...++..+.+ . .| .+.+++.+.+ .++++|+++.. +...|.
T Consensus 140 ---~~~v~~~~~~------------~---------~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~ 179 (369)
T 3cq5_A 140 ---FIAVSRGADF------------R---------ID--------MDVALEEIRA-------KQPDIVFVTTP-NNPTGD 179 (369)
T ss_dssp ---EEEEECCTTS------------S---------CC--------HHHHHHHHHH-------HCCSEEEEESS-CTTTCC
T ss_pred ---EEEecCCcCC------------C---------CC--------HHHHHHHhhc-------cCCCEEEEeCC-CCCCCC
Confidence 0011111100 0 01 2456666652 14568888887 888898
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccC-CCcceeeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLG-CVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~g-v~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+.+ .++++++|+.+++++|+||++++|++....+.. +.++ ...++.+++|.+| +| +++|++++++++++.+.
T Consensus 180 ~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~ 254 (369)
T 3cq5_A 180 VTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVM 254 (369)
T ss_dssp CCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHH
T ss_pred CCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcc-cceEEEEeCHHHHHHHH
Confidence 876 677788888888999999999988764343332 3445 4566779999998 78 79999999999998876
Q ss_pred CC
Q 005009 713 GD 714 (719)
Q Consensus 713 ~~ 714 (719)
..
T Consensus 255 ~~ 256 (369)
T 3cq5_A 255 LV 256 (369)
T ss_dssp TT
T ss_pred Hc
Confidence 53
No 90
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.48 E-value=4.3e-13 Score=146.25 Aligned_cols=225 Identities=13% Similarity=-0.016 Sum_probs=147.6
Q ss_pred CCCCcccceeeecccccccc-CCCCCCCHHHHHHHHHhhhhcccc-cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeC
Q 005009 392 DQKNKFIGQQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSD 468 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~-~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~ 468 (719)
.+|+ .+|||.++..+. .++ . +|++.+|+.++++..... .......+....+++.+.+..+-+ ..+.+++++
T Consensus 35 ~~g~----~~i~l~~~~~~~~~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~ 108 (406)
T 1xi9_A 35 KKGI----KVIRLNIGDPVKFDFQ-P-PEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTA 108 (406)
T ss_dssp HTTC----CCEECCCCCGGGTTCC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred HcCC----CEEEecCCCCCcCCCC-C-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcC
Confidence 3567 899998876543 456 4 799999999998763211 111112344555666665432211 136899999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCccc
Q 005009 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (719)
Q Consensus 469 SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (719)
+|++|++.+++.+. +. ..+|+....+||+....+. ..|..
T Consensus 109 g~~~al~~~~~~l~-----~~----------------gd~Vl~~~~~~~~~~~~~~-~~g~~------------------ 148 (406)
T 1xi9_A 109 AVTEALQLIFGALL-----DP----------------GDEILVPGPSYPPYTGLVK-FYGGK------------------ 148 (406)
T ss_dssp HHHHHHHHHHHHHC-----CT----------------TCEEEEEESCCHHHHHHHH-HTTCE------------------
T ss_pred ChHHHHHHHHHHhC-----CC----------------CCEEEEcCCCCccHHHHHH-HcCCE------------------
Confidence 99999999999871 11 2479999999998543322 11110
Q ss_pred CCCcccccCcceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc
Q 005009 549 DPPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626 (719)
Q Consensus 549 ~~p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE 626 (719)
...++.. +.+ . -| .+.+++.+. .++.+|+++
T Consensus 149 ----------~~~v~~~~~~~~------------~---------~d--------~~~l~~~l~--------~~~~~v~i~ 181 (406)
T 1xi9_A 149 ----------PVEYRTIEEEDW------------Q---------PD--------IDDIRKKIT--------DRTKAIAVI 181 (406)
T ss_dssp ----------EEEEEEEGGGTS------------E---------EC--------HHHHHHHCC--------TTEEEEEEE
T ss_pred ----------EEEeecCCCcCC------------c---------CC--------HHHHHHhhC--------cCceEEEEE
Confidence 0011111 000 0 01 255666664 257788888
Q ss_pred cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCc-cee--eehhccC-CCccchheeE
Q 005009 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP-DIA--CYGKLLT-GGVIPLAATL 702 (719)
Q Consensus 627 PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~P-DIv--tlgK~Lg-gG~~Plsavl 702 (719)
.. +...|.+ .|++++++|.++|++||+++|+||++++|++.|.......++-.- |++ +++|.+| .| +++|+++
T Consensus 182 ~p-~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~ 258 (406)
T 1xi9_A 182 NP-NNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATG-WRLGYMY 258 (406)
T ss_dssp SS-CTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGG-GCCEEEE
T ss_pred CC-CCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCc-cEEEEEE
Confidence 76 7888876 478999999999999999999999999987755555555554111 454 5799998 68 7999999
Q ss_pred --eCH----HHHhhhc
Q 005009 703 --ATN----AVFDSFV 712 (719)
Q Consensus 703 --~~~----~i~~~~~ 712 (719)
+++ ++++.+.
T Consensus 259 ~~~~~~~~~~l~~~l~ 274 (406)
T 1xi9_A 259 FVDPENKLSEVREAID 274 (406)
T ss_dssp EECTTCTTHHHHHHHH
T ss_pred EecCchhHHHHHHHHH
Confidence 888 8887653
No 91
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.47 E-value=1.4e-13 Score=147.87 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=129.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccc
Q 005009 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524 (719)
Q Consensus 445 ~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gal 524 (719)
..+|.+.|+++...-..+.+++++||++|++.+++... +. ..+|++...+||+.....
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-----~~----------------gd~Vl~~~~~~~~~~~~~- 122 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-----EP----------------GDHVISLYPTYQQLYDIP- 122 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-----CT----------------TCEEEEEESSCTHHHHHH-
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-----CC----------------CCEEEEeCCCchhHHHHH-
Confidence 35788888887532114689999999999999999761 11 247999999999844322
Q ss_pred cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHH
Q 005009 525 EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (719)
Q Consensus 525 slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~ 602 (719)
...|.. ...++.+ +.| + -| .+
T Consensus 123 ~~~g~~----------------------------~~~v~~~~~~~~------------~---------~d--------~~ 145 (375)
T 3op7_A 123 KSLGAE----------------------------VDLWQIEEENGW------------L---------PD--------LE 145 (375)
T ss_dssp HHTTCE----------------------------EEEEEEEGGGTT------------E---------EC--------HH
T ss_pred HHcCCE----------------------------EEEEeccccCCC------------C---------CC--------HH
Confidence 211110 0011111 000 0 01 25
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCc
Q 005009 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP 682 (719)
Q Consensus 603 ~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~P 682 (719)
.+++.+. .++.+|++++. ++..|... |.+++++|.++|++||+++|+||++++|++.+.....+.++..+
T Consensus 146 ~l~~~l~--------~~~~~v~~~~~-~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i 215 (375)
T 3op7_A 146 KLRQLIR--------PTTKMICINNA-NNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGI 215 (375)
T ss_dssp HHHHHCC--------TTCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEE
T ss_pred HHHHhhc--------cCCeEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEE
Confidence 5666664 35678899987 88888765 78899999999999999999999999998875555566677788
Q ss_pred ceeeehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 683 DIACYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 683 DIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
++.+++|.+| +| +++|++++++++++.+..
T Consensus 216 ~~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~ 246 (375)
T 3op7_A 216 AVNSLSKTYSLPG-IRIGWVAANHQVTDILRD 246 (375)
T ss_dssp EEEESSSSSSCGG-GCCEEEECCHHHHHHHTT
T ss_pred EEeEChhhcCCcc-cceEEEEeCHHHHHHHHH
Confidence 8999999998 78 799999999999988754
No 92
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.46 E-value=4.6e-14 Score=156.59 Aligned_cols=222 Identities=12% Similarity=0.012 Sum_probs=129.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|||+.++.++ |+|.+|+.+++..... . ....+...+|.++|+++++ .++++|++||+||++.|++
T Consensus 42 ~ylD~~~~~~~--------~~v~~a~~~~l~~~~~-~--y~~~~~~~~l~~~la~~~~---~~~v~~t~~gt~A~~~al~ 107 (467)
T 2oqx_A 42 VFIDLLTDSGT--------GAVTQSMQAAMMRGDE-A--YSGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp CSEECSCCSSC--------SCCCHHHHHHTTSCCC-C--SSSCHHHHHHHHHHHHHHC---CSEEEEEC--CCSHHHHHH
T ss_pred eeEecccCCCc--------HHHHHHHHHHhccCcc-e--eccCchhHHHHHHHHHHhC---cCcEEEcCCcHHHHHHHHH
Confidence 89999886654 7888999888754221 1 1124567799999999987 4799999999999999999
Q ss_pred HHHHHhh-ccccccccccCCCccccCcceEEEEEeCCcccCcccccccc-CCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 480 MAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 480 lA~r~~~-~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++ +..+ ..+|. +++..||.. .||+.|..+.... +....... .
T Consensus 108 ~~-~~~~~~~~G~------------~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~----------------~----- 151 (467)
T 2oqx_A 108 VL-IKKREQEKGL------------DRSKMVAFS--NYFFDTTQGHSQINGCTVRNVY----------------I----- 151 (467)
T ss_dssp HH-HHHHHHHHCC------------CTTTCEEEE--SSCCHHHHHHHHHTTCEEEECB----------------C-----
T ss_pred HH-hccccccCCC------------CccceEEec--ccccccchhhhhccCcceeecc----------------c-----
Confidence 99 4331 11120 111246654 6998764443322 11100000 0
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...+|.... .+++. .-| .+.|++.+.+ .+.+++++|++|++ ++.+|..+
T Consensus 152 ---~~~~~~~~~--------~~~~~-------~~d--------~~~Le~~i~~----~~~~~~~~vi~~~~-~n~~gG~~ 200 (467)
T 2oqx_A 152 ---KEAFDTGVR--------YDFKG-------NFD--------LEGLERGIEE----VGPNNVPYIVATIT-SNSAGGQP 200 (467)
T ss_dssp ---TTTTCTTSC--------CTTTT-------CBC--------HHHHHHHHHH----HCGGGCCCEEEESS-BCGGGCBC
T ss_pred ---cccccCCCC--------CCccC-------CcC--------HHHHHHHHHh----cCCCceeEEEEecc-ccCCCCcc
Confidence 000000000 00000 001 3567777763 11247899999997 88765567
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccC----------ccccCc---cccccccCCCcce--eeehhccCCCccchhee-
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGV---ETTADLLGCVPDI--ACYGKLLTGGVIPLAAT- 701 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTG----------fGRtG~---~~a~e~~gv~PDI--vtlgK~LggG~~Plsav- 701 (719)
++.+++++|+++|++||++||+|++|.. .+.+|. .++.+.+ -.+|+ .+++|++| +|+|++
T Consensus 201 ~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~s~sK~~g---~~~Gg~~ 276 (467)
T 2oqx_A 201 VSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLAMSAKKDAM---VPMGGLL 276 (467)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEEESSSTTC---CSSCEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEEEecccccC---CCCceEE
Confidence 7899999999999999999999976642 133333 3321100 11454 57889885 355554
Q ss_pred EeCHH
Q 005009 702 LATNA 706 (719)
Q Consensus 702 l~~~~ 706 (719)
+++++
T Consensus 277 ~~~~~ 281 (467)
T 2oqx_A 277 CMKDD 281 (467)
T ss_dssp EECSG
T ss_pred EecCh
Confidence 45555
No 93
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.46 E-value=5.2e-13 Score=141.58 Aligned_cols=210 Identities=13% Similarity=0.014 Sum_probs=139.6
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
..|+. +|++.+|+.+++..+... ....+...+++++|++..+.+ .++++|+++|++|++.+++.++ +.
T Consensus 22 ~~~~~-~~~v~~a~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~g~~-~~~v~~~~g~t~a~~~~~~~~~-----~~-- 89 (359)
T 1svv_A 22 YSVGM-HPKILDLMARDNMTQHAG---YGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLAL-----RP-- 89 (359)
T ss_dssp CSSCC-CHHHHHHHHHHTTCCCCS---TTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHHC-----CT--
T ss_pred CcCCC-CHHHHHHHHHHHhhcccc---ccccHHHHHHHHHHHHHhCCC-CccEEEeCCchHHHHHHHHHHh-----CC--
Confidence 46788 999999999999864432 245778889999999987743 4689999999999999999882 11
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccc-cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhh
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~g-alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (719)
..+|+....+||+.... .+...|.. ...++.+ .+
T Consensus 90 --------------gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~-~~-- 124 (359)
T 1svv_A 90 --------------WEAVIATQLGHISTHETGAIEATGHK----------------------------VVTAPCP-DG-- 124 (359)
T ss_dssp --------------TEEEEEETTSHHHHSSTTHHHHTTCC----------------------------EEEECCT-TS--
T ss_pred --------------CCEEEEcccchHHHHHHHHHhcCCCe----------------------------eEEEeCC-CC--
Confidence 24789999999985442 11111100 0111111 00
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
.-| .+.+++.+.+.. ..++.++++|++++. . ..|.+. |.+++++|.++|
T Consensus 125 -------------------~~d--------~~~l~~~l~~~~-~~~~~~~~~v~~~~~-~-ptG~~~-~~~~l~~i~~~~ 173 (359)
T 1svv_A 125 -------------------KLR--------VADIESALHENR-SEHMVIPKLVYISNT-T-EVGTQY-TKQELEDISASC 173 (359)
T ss_dssp -------------------CCC--------HHHHHHHHHHSC-STTSCEEEEEEEESS-C-TTSCCC-CHHHHHHHHHHH
T ss_pred -------------------eec--------HHHHHHHHHHHH-hccCCCceEEEEEcC-C-CCceec-CHHHHHHHHHHH
Confidence 001 255667776410 012346889999985 4 567765 479999999999
Q ss_pred HhcCCcEEEeccccCc--cccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhh
Q 005009 651 QNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 651 ~k~gilLI~DEVqTGf--GRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~ 711 (719)
++||+++|+||++++| |+++.....-..+..+|++++ .|. ||...+|++++++++++.+
T Consensus 174 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~--g~~~~~g~l~~~~~~~~~~ 236 (359)
T 1svv_A 174 KEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA--GGMFGEALIILNDALKPNA 236 (359)
T ss_dssp HHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT--TCSSCEEEEECSGGGCTTH
T ss_pred HHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC--CCCCceEEEEEcccHHHHH
Confidence 9999999999999776 666542211111135788764 674 4434567888898887655
No 94
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.46 E-value=8.6e-13 Score=143.15 Aligned_cols=221 Identities=13% Similarity=0.044 Sum_probs=142.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC-CCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~-~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.+|||.++.. .+|+ +|.+.+|+.++++....... .....+....+++.+.+..+-. ..+.++++++|++|++.+
T Consensus 42 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~ 117 (389)
T 1o4s_A 42 DVINLTAGEP--DFPT--PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA 117 (389)
T ss_dssp CCEECCCSSC--SSCC--CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHH
Confidence 8999988764 4664 69999999999876321110 1112334445555554432311 136899999999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++.+. .. ..+|+....+||+....+ ...|..
T Consensus 118 ~~~l~-----~~----------------gd~Vl~~~~~~~~~~~~~-~~~g~~--------------------------- 148 (389)
T 1o4s_A 118 FMALL-----DP----------------GDEVIVFSPVWVSYIPQI-ILAGGT--------------------------- 148 (389)
T ss_dssp HHHHC-----CT----------------TCEEEEEESCCTTHHHHH-HHTTCE---------------------------
T ss_pred HHHhC-----CC----------------CCEEEEcCCCchhHHHHH-HHcCCE---------------------------
Confidence 99871 11 247999999999854332 222110
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...++....- .|. -| .+.+++.+. .++.+|+++.. +...|.+
T Consensus 149 -~~~v~~~~~~----------~~~---------~d--------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~- 190 (389)
T 1o4s_A 149 -VNVVETFMSK----------NFQ---------PS--------LEEVEGLLV--------GKTKAVLINSP-NNPTGVV- 190 (389)
T ss_dssp -EEEEECCGGG----------TTC---------CC--------HHHHHHTCC--------TTEEEEEEESS-CTTTCCC-
T ss_pred -EEEEecCCcc----------CCC---------CC--------HHHHHHhcc--------cCceEEEEcCC-CCCCCCC-
Confidence 0011111000 000 01 245665553 25678888876 7777875
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC--Ccce--eeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDI--ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv--~PDI--vtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.|.+++++|.++|++||+++|+||++++|...|+......+.- ..|+ .+++|.+| .| +++|++++++++++.+.
T Consensus 191 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~ 269 (389)
T 1o4s_A 191 YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVS 269 (389)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHHH
Confidence 4789999999999999999999999999877775433333321 2354 47999998 78 79999999999887653
No 95
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.45 E-value=7.2e-13 Score=142.87 Aligned_cols=212 Identities=8% Similarity=-0.053 Sum_probs=141.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCC-----CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~-----~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||..+ .|+. +|++.+|+.++++...... ... ...+...++.++|+++++....+.++|+++|++|
T Consensus 25 i~l~~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a 97 (406)
T 1kmj_A 25 AYLDSAA------SAQK-PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEG 97 (406)
T ss_dssp EECCTTT------CCCC-CHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred EEecCCc------cCCC-CHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHH
Confidence 4566443 3578 9999999999998753110 000 0245567899999998874113689999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccccc---CCCCCCCCCCCCCccCCCcccCC
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ---APSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt---~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++.+++.+ +.+.... ..+|+....+|||.......+. |..
T Consensus 98 ~~~~~~~~-~~~~~~~----------------gd~vl~~~~~~~~~~~~~~~~~~~~g~~-------------------- 140 (406)
T 1kmj_A 98 INLVANSW-GNSNVRA----------------GDNIIISQMEHHANIVPWQMLCARVGAE-------------------- 140 (406)
T ss_dssp HHHHHHHT-HHHHCCT----------------TCEEEEETTCCGGGTHHHHHHHHHHTCE--------------------
T ss_pred HHHHHHHh-hhhcCCC----------------CCEEEEecccchHHHHHHHHHHHhCCCE--------------------
Confidence 99999988 3321111 2479999999998654322211 110
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.+..+ ..| .+.+++.+. .++++|+++++ +
T Consensus 141 --------~~~~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~ 174 (406)
T 1kmj_A 141 --------LRVIPLNPDG-----------TLQ------------------LETLPTLFD--------EKTRLLAITHV-S 174 (406)
T ss_dssp --------EEEECBCTTS-----------CBC------------------GGGHHHHCC--------TTEEEEEEESB-C
T ss_pred --------EEEEecCCCC-----------CcC------------------HHHHHHHhc--------cCCeEEEEeCC-C
Confidence 0111111100 011 134555553 36789999997 9
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHH
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~ 708 (719)
+..|.+.+ +++|.++|++||+++|+||+++ +|+.. +.... ..+|++ +++|.+|. ..+|+++++++++
T Consensus 175 nptG~~~~----l~~i~~l~~~~~~~li~D~~~~-~g~~~--~~~~~--~~~d~~~~s~~K~~g~--~G~G~~~~~~~~~ 243 (406)
T 1kmj_A 175 NVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHHP--VDVQA--LDCDFYVFSGHKLYGP--TGIGILYVKEALL 243 (406)
T ss_dssp TTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHH--HTCSEEEEEGGGTTSC--TTCEEEEECHHHH
T ss_pred ccccCcCC----HHHHHHHHHHcCCEEEEEchhh-cCCCC--Ccccc--cCCCEEEEEchhccCC--CCcEEEEEeHHHH
Confidence 99999887 9999999999999999999996 44432 22222 358987 59999843 2379999999998
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 244 ~~~~ 247 (406)
T 1kmj_A 244 QEMP 247 (406)
T ss_dssp HHCC
T ss_pred hhcC
Confidence 8764
No 96
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.45 E-value=1e-12 Score=144.86 Aligned_cols=227 Identities=14% Similarity=0.031 Sum_probs=147.3
Q ss_pred EeCCCCcccceeeecccccccc-CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC----CCCeE
Q 005009 390 YQDQKNKFIGQQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG----WASRA 464 (719)
Q Consensus 390 ~D~dG~~~~~~yLD~~sg~~~~-~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~----~~~rv 464 (719)
.+.+|+ .+||+..|.... +-... +|+|.+|+.++++....... .......+|.+.|+++++.. ..+++
T Consensus 49 ~~~~~~----~~i~l~~g~~~~~g~~~~-~~~v~~a~~~~~~~~~~~~y--~~~~g~~~lr~~la~~~~~~~~~~~~~~v 121 (427)
T 3dyd_A 49 KPNPNK----TMISLSIGDPTVFGNLPT-DPEVTQAMKDALDSGKYNGY--APSIGFLSSREEIASYYHCPEAPLEAKDV 121 (427)
T ss_dssp CCCTTS----CCEECCCSCTTTTSSSCC-CHHHHHHHHHHHHHCCSSSC--CCTTCCHHHHHHHHHHHCBTTBCCCGGGE
T ss_pred cccCCC----CEEeCCCcCCCccCCCCC-CHHHHHHHHHHHhcCcCCCC--CCCCCcHHHHHHHHHHHhhcCCCCChHHE
Confidence 345577 899999987432 23456 89999999999886422111 01222345666666655410 13689
Q ss_pred EEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCC
Q 005009 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (719)
Q Consensus 465 ~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~ 544 (719)
+++++|++|++.+++.+. +. ..+|+....+|++....+.... ..
T Consensus 122 ~~t~g~t~al~~~~~~l~-----~~----------------gd~vl~~~p~~~~~~~~~~~~g-~~-------------- 165 (427)
T 3dyd_A 122 ILTSGCSQAIDLCLAVLA-----NP----------------GQNILVPRPGFSLYKTLAESMG-IE-------------- 165 (427)
T ss_dssp EEESSHHHHHHHHHHHHC-----CT----------------TCEEEEEESCCTHHHHHHHHTT-CE--------------
T ss_pred EEecCcHHHHHHHHHHhc-----CC----------------CCEEEEcCCCchhHHHHHHHcC-CE--------------
Confidence 999999999999999872 11 2478999999998554332221 10
Q ss_pred CcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 005009 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (719)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI 624 (719)
.+.+|.... ++ + .-| .+.+++.+. .+..+|+
T Consensus 166 ----------------~~~~~~~~~-----------~~----~--~~d--------~~~l~~~l~--------~~~~~v~ 196 (427)
T 3dyd_A 166 ----------------VKLYNLLPE-----------KS----W--EID--------LKQLEYLID--------EKTACLI 196 (427)
T ss_dssp ----------------EEEEEEEGG-----------GT----T--EEC--------HHHHHSSCC--------TTEEEEE
T ss_pred ----------------EEEEecccc-----------cC----C--CCC--------HHHHHHHhc--------cCCCEEE
Confidence 011110000 00 0 001 244554443 2345555
Q ss_pred EccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhccC-CCccchh
Q 005009 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT-GGVIPLA 699 (719)
Q Consensus 625 vEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~Lg-gG~~Pls 699 (719)
+... +...|.+. |++.+++|.++|++||+++|+||++++|+++|..+ ....++..++++ +++|.++ .| +++|
T Consensus 197 i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G-~riG 273 (427)
T 3dyd_A 197 VNNP-SNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG-WRLG 273 (427)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG-GCCE
T ss_pred EECC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC-cceE
Confidence 5554 78888754 78899999999999999999999999999998744 556667777777 8999965 47 7999
Q ss_pred eeEeC-------HHHHhhh
Q 005009 700 ATLAT-------NAVFDSF 711 (719)
Q Consensus 700 avl~~-------~~i~~~~ 711 (719)
+++++ +++.+.+
T Consensus 274 ~~~~~~~~~~~~~~i~~~l 292 (427)
T 3dyd_A 274 WILIHDRRDIFGNEIRDGL 292 (427)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEecCcchhhHHHHHHHH
Confidence 99987 4666544
No 97
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.45 E-value=4.3e-13 Score=145.68 Aligned_cols=230 Identities=10% Similarity=0.025 Sum_probs=143.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC--CCCChHHHHHHHHHHhccCCCC-C-CeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP--ENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~--~~~~~~~~~Lae~L~~~~~~~~-~-~rv~f~~SGsEA~E 475 (719)
.+|||..|.. .++ . +|+|.+|+++++......... ....+....+++.+.+..+... - +.++|+++|++|++
T Consensus 24 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 24 SVVNLGQGFP--DIS-P-PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TSEECSSCCC--CSC-C-CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 5777777542 233 4 899999999998754221111 1123445566666655332210 2 58999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++.+. .. ..+|+....+||+..... ...|...
T Consensus 100 ~~~~~~~-----~~----------------gd~vl~~~p~~~~~~~~~-~~~g~~~------------------------ 133 (410)
T 3e2y_A 100 NSIQGLV-----DP----------------GDEVIIMVPFYDCYEPMV-RMAGAVP------------------------ 133 (410)
T ss_dssp HHHHHHC-----CT----------------TCEEEEEESCCTTHHHHH-HHTTCEE------------------------
T ss_pred HHHHHhc-----CC----------------CCEEEEeCCCchhhHHHH-HHcCCEE------------------------
Confidence 9999871 11 247899999998754332 2222110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
..++....... . ....+..+ .-| .+.+++.+. .++.+|+++.. +...|.
T Consensus 134 ----~~~~~~~~~~~--g------~~~~~~~~--~~d--------~~~l~~~~~--------~~~~~v~~~~p-~nptG~ 182 (410)
T 3e2y_A 134 ----VFIPLRSKPTD--G------MKWTSSDW--TFD--------PRELESKFS--------SKTKAIILNTP-HNPLGK 182 (410)
T ss_dssp ----EEEECEECCCC--S------SCCBGGGE--ECC--------HHHHHTTCC--------TTEEEEEEESS-CTTTCC
T ss_pred ----EEEeccccccc--c------ccccccCC--cCC--------HHHHHhhcC--------CCceEEEEeCC-CCCCCc
Confidence 00111000000 0 00000000 001 244554442 36888899986 888888
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccC----CCcceeeehhccC-CCccchheeEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG----CVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~g----v~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~ 709 (719)
+. +++.+++|.++|++||+++|+||++++|+++|+.+ ....+. ...++.+++|.+| .| +++|++++++++++
T Consensus 183 ~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~ 260 (410)
T 3e2y_A 183 VY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIK 260 (410)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHH
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHH
Confidence 66 77889999999999999999999999999888632 333332 2244457899998 78 79999999999988
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 261 ~~~ 263 (410)
T 3e2y_A 261 HLQ 263 (410)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 98
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.45 E-value=9.2e-13 Score=143.81 Aligned_cols=229 Identities=12% Similarity=0.064 Sum_probs=145.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc---cccCCCCCChHHHHHHHHHHhccCCCC-C-CeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~---~~~~~~~~~~~~~~Lae~L~~~~~~~~-~-~rv~f~~SGsEA~ 474 (719)
.+|||..|.. .++ . +|+|.+|+++++.... .........+....+++.+.+..+... - +.++|+++|++|+
T Consensus 29 ~~i~l~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 29 DVVNLGQGFP--DFP-P-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp CCEECCCSSC--SSC-C-CHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CceEeCCCCC--CCC-C-CHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 6788877652 333 5 8999999999987632 111111233556667777766443211 1 4799999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
+.+++.+. .. ..+|+....+||+....... .|...
T Consensus 105 ~~~~~~~~-----~~----------------gd~vl~~~p~~~~~~~~~~~-~g~~~----------------------- 139 (422)
T 3fvs_A 105 FTAFQALV-----DE----------------GDEVIIIEPFFDCYEPMTMM-AGGRP----------------------- 139 (422)
T ss_dssp HHHHHHHC-----CT----------------TCEEEEEESCCTTHHHHHHH-TTCEE-----------------------
T ss_pred HHHHHHHc-----CC----------------CCEEEEcCCCchhhHHHHHH-cCCEE-----------------------
Confidence 99999871 11 24799999999985433222 22110
Q ss_pred ccCcceeecCcch--hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 555 MYNSKWILSLPEW--LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 555 ~~~~~~~~~~P~~--~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
..++.... ..+ .. .. +..+ .-| .+.+++.+. .++.+|+++.. +..
T Consensus 140 -----~~~~~~~~~~~~G------~~-~~--~~~~--~~d--------~~~l~~~~~--------~~~~~v~~~~p-~np 186 (422)
T 3fvs_A 140 -----VFVSLKPGPIQNG------EL-GS--SSNW--QLD--------PMELAGKFT--------SRTKALVLNTP-NNP 186 (422)
T ss_dssp -----EEEECBCCCCCSS------SC-CB--GGGS--BCC--------HHHHHTTCC--------TTEEEEEEESS-CTT
T ss_pred -----EEEeccccccccc------cc-cc--ccCC--CCC--------HHHHHhhcC--------CCceEEEECCC-CCC
Confidence 00110000 000 00 00 0000 001 244554442 36788888876 888
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc----CCCcceeeehhccC-CCccchheeEeCHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL----GCVPDIACYGKLLT-GGVIPLAATLATNA 706 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~----gv~PDIvtlgK~Lg-gG~~Plsavl~~~~ 706 (719)
.|.+. |.+.+++|.++|++||+++|+||++++|+++|+. .....+ +...++.+++|.+| .| +++|+++++++
T Consensus 187 tG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~ 264 (422)
T 3fvs_A 187 LGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDH 264 (422)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHH
T ss_pred CCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHH
Confidence 88876 7889999999999999999999999999888863 233222 22344558899998 78 79999999999
Q ss_pred HHhhhc
Q 005009 707 VFDSFV 712 (719)
Q Consensus 707 i~~~~~ 712 (719)
+++.+.
T Consensus 265 ~~~~~~ 270 (422)
T 3fvs_A 265 IMKHLR 270 (422)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 99
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.45 E-value=7.9e-13 Score=141.41 Aligned_cols=212 Identities=9% Similarity=0.003 Sum_probs=142.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+|||.++.. .++ . +|+|.+|+.++++.+.. +..+...++.++|+++++-. .+.++|+++|++|++.+++
T Consensus 33 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 33 KITKLSSNEN--PLG-T-SKKVAAIQANSSVETEI-----YPDGWASSLRKEVADFYQLE-EEELIFTAGVDELIELLTR 102 (363)
T ss_dssp CCEECSSCSC--TTC-C-CHHHHHHHHTCBSCCCB-----C----CHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEccCCCC--CCC-C-CHHHHHHHHHHHHHhhc-----CCCcchHHHHHHHHHHhCCC-hhhEEEeCCHHHHHHHHHH
Confidence 7899988633 454 5 89999999998865432 22334467888888877632 3689999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +. ..+|+....+||+....+... |.. .
T Consensus 103 ~~~-----~~----------------gd~vl~~~~~~~~~~~~~~~~-g~~----------------------------~ 132 (363)
T 3ffh_A 103 VLL-----DT----------------TTNTVMATPTFVQYRQNALIE-GAE----------------------------V 132 (363)
T ss_dssp HHC-----ST----------------TCEEEEEESSCHHHHHHHHHH-TCE----------------------------E
T ss_pred HHc-----cC----------------CCEEEEcCCChHHHHHHHHHc-CCE----------------------------E
Confidence 761 11 247999999999844332221 110 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++.+..+ .-| .+.+++.+. .++.+|+++.. +...|.+. |
T Consensus 133 ~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~-~ 173 (363)
T 3ffh_A 133 REIPLLQDG---------------------EHD--------LEGMLNAID--------EKTTIVWICNP-NNPTGNYI-E 173 (363)
T ss_dssp EEEECCTTS---------------------CCC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC---------------------CcC--------HHHHHHhcc--------cCCCEEEEeCC-CCCcCCCc-C
Confidence 111111000 001 245666653 35778888876 88888876 4
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc----eeeehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD----IvtlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
.+.++++.++|++ |+++|+||+|++|++ |+++........+| +.+++|.+| .| +++|++++++++.+.+..
T Consensus 174 ~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~ 249 (363)
T 3ffh_A 174 LADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNI 249 (363)
T ss_dssp HHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCch-hceeeeecCHHHHHHHHH
Confidence 5556666666666 999999999999988 77655544444455 558999998 78 799999999999987754
No 100
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.44 E-value=7.7e-13 Score=146.44 Aligned_cols=220 Identities=14% Similarity=0.006 Sum_probs=138.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|||+.++.++.. - .+++.+|+... ...+ ...+...+|.++|+++.+ .+.++|++||++|++.|++
T Consensus 43 ~ylD~~~~~~~~~---~-~~~~~~a~~~~-----~~~y--~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~al~ 108 (456)
T 2ez2_A 43 IYIDLLTDSGTNA---M-SDKQWAGMMMG-----DEAY--AGSENFYHLERTVQELFG---FKHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp CSEECSCSSSCCC---C-CHHHHHHHTTC-----CCCS--SSCHHHHHHHHHHHHHHC---CSEEEEESSHHHHHHHHHH
T ss_pred ceeeeccccCCcc---C-CHHHHHHhhcc-----hhhc--ccChhHHHHHHHHHHHhC---CCcEEEeCCcHHHHHHHHH
Confidence 8999988655432 2 57777776521 1111 135567899999999887 3689999999999999998
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.+. . ++ + |+...+||+.+..++...|....
T Consensus 109 ~l~-----~---------------~g--d-i~~~~~~~~~~~~~~~~~G~~~~--------------------------- 138 (456)
T 2ez2_A 109 LAI-----K---------------PG--Q-YVAGNMYFTTTRYHQEKNGAVFV--------------------------- 138 (456)
T ss_dssp HHC-----C---------------TT--C-EEEESSCCHHHHHHHHHTTCEEE---------------------------
T ss_pred HhC-----C---------------CC--C-EeccccccchhHHHHHHcCCEEE---------------------------
Confidence 771 1 22 3 77888998987666665542110
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMV 638 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~p 638 (719)
.++...... +....+|+. .-| .+.|++.+.+ .....+++|+++ |. ++..|. +.
T Consensus 139 -~v~~~~~~~----~~~~~~~~~-------~~d--------~~~l~~~i~~----~t~~~~~~v~l~~p~-n~ptG~-~~ 192 (456)
T 2ez2_A 139 -DIVRDEAHD----AGLNIAFKG-------DID--------LKKLQKLIDE----KGAENIAYICLAVTV-NLAGGQ-PV 192 (456)
T ss_dssp -ECBCGGGGC----TTCCCSCTT-------CBC--------HHHHHHHHHH----HCGGGEEEEEEESSB-TTTTSB-CC
T ss_pred -Eeccccccc----ccccccccC-------CCC--------HHHHHHHHHh----ccccceeEEEEeccC-CCCCCc-cC
Confidence 000000000 000000100 001 2556777753 112467899999 65 657785 56
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccC----------ccccCcccc--ccccCCCcceeee-hhccCCCccc-hheeEe-
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGVETT--ADLLGCVPDIACY-GKLLTGGVIP-LAATLA- 703 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTG----------fGRtG~~~a--~e~~gv~PDIvtl-gK~LggG~~P-lsavl~- 703 (719)
+.+++++|.++|++||++||+||+|+. +++.|..+. .+..+..+|++++ +|.+++ .| .|.+++
T Consensus 193 ~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~--~~~gG~~~~~ 270 (456)
T 2ez2_A 193 SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL--VNIGGFLCMN 270 (456)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC--CSSCEEEEES
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC--CCceeEEEEC
Confidence 899999999999999999999999974 456665431 1123445899988 477754 35 456666
Q ss_pred CHHHHhhh
Q 005009 704 TNAVFDSF 711 (719)
Q Consensus 704 ~~~i~~~~ 711 (719)
++++++.+
T Consensus 271 ~~~~~~~~ 278 (456)
T 2ez2_A 271 DDEMFSSA 278 (456)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 57776654
No 101
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.43 E-value=1.2e-12 Score=141.67 Aligned_cols=222 Identities=13% Similarity=0.021 Sum_probs=139.5
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC-CCCCChHHHHHHHHHHhccCCC-CCCeEEEeCC
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKG-WASRAYFSDN 469 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~-~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~S 469 (719)
.+|+ ++|||.+|.. .++. +|+|.+|+.++++....... .....+...++++.+.+..+.+ ..+.++|+++
T Consensus 28 ~~g~----~~i~l~~g~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g 99 (391)
T 3h14_A 28 EAGR----RIIHMEVGQP--GTGA--PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPG 99 (391)
T ss_dssp HTTC----CCEECCCSSC--SSCS--CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred hcCC----CeEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecC
Confidence 4677 9999999764 3443 78999999998875322111 1112344555555555432210 1368999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccC
Q 005009 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 470 GsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
|++|++.+++... +. ..+|++...+||+....... .|..
T Consensus 100 ~~~al~~~~~~l~-----~~----------------gd~vl~~~p~~~~~~~~~~~-~g~~------------------- 138 (391)
T 3h14_A 100 SSGGFLLAFTALF-----DS----------------GDRVGIGAPGYPSYRQILRA-LGLV------------------- 138 (391)
T ss_dssp HHHHHHHHHHHHC-----CT----------------TCEEEEEESCCHHHHHHHHH-TTCE-------------------
T ss_pred hHHHHHHHHHHhc-----CC----------------CCEEEEcCCCCccHHHHHHH-cCCE-------------------
Confidence 9999999998771 11 24799999999985433221 1110
Q ss_pred CCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 005009 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPVi 629 (719)
...++.... + -+ .-| .+.++ + . ++.+|+++..
T Consensus 139 ---------~~~v~~~~~-------------~----~~--~~d--------~~~l~----~----~---~~~~v~i~~p- 170 (391)
T 3h14_A 139 ---------PVDLPTAPE-------------N----RL--QPV--------PADFA----G----L---DLAGLMVASP- 170 (391)
T ss_dssp ---------EEEEECCGG-------------G----TT--SCC--------HHHHT----T----S---CCSEEEEESS-
T ss_pred ---------EEEeecCcc-------------c----CC--CCC--------HHHHH----h----c---CCeEEEECCC-
Confidence 001111100 0 00 001 12222 1 1 4566777765
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc-CCCcceeeehhccC-CCccchheeEeCHHH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~-gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i 707 (719)
+...|.+. |.+.+++|.++|++||+++|+||++++|++.|.......+ +....+.+++|.+| .| +++|++++++++
T Consensus 171 ~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~ 248 (391)
T 3h14_A 171 ANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTG-WRVGWMVVPEDQ 248 (391)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTT-SCCEEEECCGGG
T ss_pred CCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcc-ceeEEEEeCHHH
Confidence 78888765 6777999999999999999999999999888864333222 22223337999998 88 799999999998
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
.+.+.
T Consensus 249 ~~~~~ 253 (391)
T 3h14_A 249 VRVVE 253 (391)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 102
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.42 E-value=1.2e-12 Score=141.88 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=142.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-----cccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-----~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA 473 (719)
.+|||.+| .+.... +|+|.+|++++++... .........+...++++.+.+..+.+ ..+.++|+++|++|
T Consensus 36 ~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 36 NVYDFSIG---NPSIPA-PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp GCEECCSC---CCCSCC-CHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CeEEeecC---CCCCCC-CHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 78999886 233346 9999999999987632 11111122455666777776544311 13689999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
++.+++... . +++.+|+....+||+....+.. .|..
T Consensus 112 l~~~~~~l~-----~---------------~g~d~vl~~~p~~~~~~~~~~~-~g~~----------------------- 147 (398)
T 3ele_A 112 LSICFRALT-----S---------------DAYDEFITIAPYFPEYKVFVNA-AGAR----------------------- 147 (398)
T ss_dssp HHHHHHHHC-----C---------------STTCEEEEESSCCTHHHHHHHH-TTCE-----------------------
T ss_pred HHHHHHHHc-----C---------------CCCCEEEEeCCCchhhHHHHHH-cCCE-----------------------
Confidence 999999871 1 2225899999999985433222 1110
Q ss_pred cccCcceeecCc-chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 554 FMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 554 ~~~~~~~~~~~P-~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
...++.. +.+ .-| .+.+++.+. .++.+|++... +..
T Consensus 148 -----~~~v~~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~p-~np 184 (398)
T 3ele_A 148 -----LVEVPADTEHF---------------------QID--------FDALEERIN--------AHTRGVIINSP-NNP 184 (398)
T ss_dssp -----EEEECCCTTTS---------------------SCC--------HHHHHHTCC--------TTEEEEEECSS-CTT
T ss_pred -----EEEEecCCcCC---------------------cCC--------HHHHHHHhC--------cCCCEEEEcCC-CCC
Confidence 0011111 000 001 245665553 25677777654 777
Q ss_pred CccccCCHHHHHHHHHHHHh------cCCcEEEeccccCccccCccc--cccccCCCcceeeehhccC-CCccchheeEe
Q 005009 633 GGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVET--TADLLGCVPDIACYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k------~gilLI~DEVqTGfGRtG~~~--a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~ 703 (719)
.|.+. |.+.+++|.++|++ ||+++|+||++++|++.|... ..+.++....+.+++|.+| .| +++|++++
T Consensus 185 tG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~ 262 (398)
T 3ele_A 185 SGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPG-ERIGYVLV 262 (398)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTT-TCCEEEEC
T ss_pred CCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCcc-ceeEEEEE
Confidence 88765 66779999999999 999999999999998888533 2244454555668999998 88 79999999
Q ss_pred CHHHH
Q 005009 704 TNAVF 708 (719)
Q Consensus 704 ~~~i~ 708 (719)
++++.
T Consensus 263 ~~~~~ 267 (398)
T 3ele_A 263 PDEVY 267 (398)
T ss_dssp CTTST
T ss_pred cchhh
Confidence 98743
No 103
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.42 E-value=5.7e-13 Score=145.34 Aligned_cols=211 Identities=13% Similarity=0.035 Sum_probs=139.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhh--hc-ccccC-----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAA--RF-GHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~--~~-~~~~~-----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGs 471 (719)
.|||+.+ -|+. +|+|++|+.+++. .. ..... .....+...++.++|++.++.+ .+.++|+++|+
T Consensus 24 iyld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggt 95 (423)
T 3lvm_A 24 IYLDYSA------TTPV-DPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGAT 95 (423)
T ss_dssp EECBTTT------CCCC-CHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred EeecCCC------cCCC-CHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCChH
Confidence 7899765 3678 9999999999987 32 21100 0011345578889999988743 35899999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc--cCCCCCCCCCCCCCccCCCcccC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl--t~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
+|++.|++.+.+.+. .. ..+|+....+||+.......+ .|..
T Consensus 96 ~a~~~a~~~l~~~~~-~~----------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~------------------- 139 (423)
T 3lvm_A 96 ESDNLAIKGAANFYQ-KK----------------GKHIITSKTEHKAVLDTCRQLEREGFE------------------- 139 (423)
T ss_dssp HHHHHHHHHHHHHHT-TT----------------CCEEEEETTSCHHHHHHHHHHHHTTCE-------------------
T ss_pred HHHHHHHHHHHHhhc-cC----------------CCEEEECCccchHHHHHHHHHHHcCCE-------------------
Confidence 999999998743332 11 247888888888854333222 1100
Q ss_pred CCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 005009 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPVi 629 (719)
...++....+ ..| .+.+++.+. .++++|+++++
T Consensus 140 ---------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~- 172 (423)
T 3lvm_A 140 ---------VTYLAPQRNG-----------IID------------------LKELEAAMR--------DDTILVSIMHV- 172 (423)
T ss_dssp ---------EEEECCCTTS-----------CCC------------------HHHHHHHCC--------TTEEEEECCSB-
T ss_pred ---------EEEeccCCCC-----------ccC------------------HHHHHHhcC--------CCcEEEEEeCC-
Confidence 0111111000 001 255666664 36789999997
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i 707 (719)
++..|.+.+ +++|.++|++||++||+||++++ |.. ........+|+++++ |.+ |+ .++|++++++++
T Consensus 173 ~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~~~~~~~di~~~s~sK~~-g~-~g~G~~~~~~~~ 241 (423)
T 3lvm_A 173 NNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PIDLSQLKVDLMSFSGHKIY-GP-KGIGALYVRRKP 241 (423)
T ss_dssp CTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCCTTTSCCSEEEEESTTTT-SC-SSCEEEEECBTT
T ss_pred CCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcChhhcCCCEEEechHHhc-CC-CCeEEEEEeccc
Confidence 899999887 99999999999999999999964 222 122233468999876 954 34 468999999887
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
.+.+.
T Consensus 242 ~~~~~ 246 (423)
T 3lvm_A 242 RVRIE 246 (423)
T ss_dssp BCCCC
T ss_pred cCCCC
Confidence 66553
No 104
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.41 E-value=1e-12 Score=140.82 Aligned_cols=210 Identities=12% Similarity=-0.047 Sum_probs=135.7
Q ss_pred CCCCCHHHHHHHHHhhhhcccccCC-CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcc--cc
Q 005009 414 DATLQIELARDMGYTAARFGHVMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD--HE 490 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~~~~~~~~~~-~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~--~G 490 (719)
+.. +|++.+|+.+++......... ....+...++.++|++..+.+ .+.++|+++|++|++.|++.++..+..+ .|
T Consensus 40 ~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~ 117 (397)
T 3f9t_A 40 SNV-LPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNK-DAYGHIVSGGTEANLMALRCIKNIWREKRRKG 117 (397)
T ss_dssp CCC-CTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCT-TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC-cHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCC-CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhc
Confidence 345 899999999998763221110 012445567888899888654 4688999999999999999984321111 00
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhh
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (719)
. ....+.+|+....+|++ +..++...|.. ...++....+.
T Consensus 118 ~----------~~~~gd~vl~~~~~~~~-~~~~~~~~g~~----------------------------~~~v~~~~~~~- 157 (397)
T 3f9t_A 118 L----------SKNEHPKIIVPITAHFS-FEKGREMMDLE----------------------------YIYAPIKEDYT- 157 (397)
T ss_dssp C----------CCCSSCEEEEETTCCTH-HHHHHHHHTCE----------------------------EEEECBCTTSS-
T ss_pred c----------cCCCCeEEEECCcchhH-HHHHHHHcCce----------------------------eEEEeeCCCCc-
Confidence 0 00123467777776666 33333332210 01111111110
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
.| .+.+++.+.+ .++.+|++++. ++..|.+.+ +++|.++|
T Consensus 158 ----------~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~ 197 (397)
T 3f9t_A 158 ----------ID------------------EKFVKDAVED-------YDVDGIIGIAG-TTELGTIDN----IEELSKIA 197 (397)
T ss_dssp ----------BC------------------HHHHHHHHHH-------SCCCEEEEEBS-CTTTCCBCC----HHHHHHHH
T ss_pred ----------CC------------------HHHHHHHHhh-------cCCeEEEEECC-CCCCCCCCC----HHHHHHHH
Confidence 01 2567777763 14567777776 788888876 99999999
Q ss_pred HhcCCcEEEeccccCc--cccCc---------cccccccCCCcceeeehhccCCCccchheeEeCHHH
Q 005009 651 QNRKIPVIFDEVFTGF--WRLGV---------ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 651 ~k~gilLI~DEVqTGf--GRtG~---------~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i 707 (719)
++||+++|+||+++++ +.+|. .+.++. ++.+.+.+++|.+++| .++|+++++++.
T Consensus 198 ~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~-~~~g~~~~~~~~ 263 (397)
T 3f9t_A 198 KENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCP-IPSGGILFKDIG 263 (397)
T ss_dssp HHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCC-SSCEEEEESSGG
T ss_pred HHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCC-CCceEEEEeCHH
Confidence 9999999999999874 44554 455555 7777777899999888 599999987654
No 105
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.40 E-value=1.1e-12 Score=144.90 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=140.7
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCC-ChHHHHHHHHHHhcc----CCCCCCeEE
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAY 465 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~-~~~~~~Lae~L~~~~----~~~~~~rv~ 465 (719)
.+|+ ++||+.+|. ..++ . +|+|++|++++++++.... ...+. .....+|.++|++++ +.. .+.++
T Consensus 66 ~~~~----~~i~l~~g~--~~~~-~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~-~~~i~ 136 (449)
T 3qgu_A 66 NPDA----KIISLGIGD--TTEP-L-PKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRA-ADEIF 136 (449)
T ss_dssp CTTC----CCEECSSCC--CCCC-C-CHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCC-GGGEE
T ss_pred CCCC----CEEEeeCCC--CCCC-C-CHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCC-HHHEE
Confidence 3567 899998873 2232 4 8999999999998654211 11121 122457777777765 322 36899
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCC
Q 005009 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (719)
Q Consensus 466 f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~ 545 (719)
|+++|++|++.+..++ +. ..+|+..+.+||+.............++.. .|
T Consensus 137 ~t~G~~~al~~~~~l~------~~----------------gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~---~~----- 186 (449)
T 3qgu_A 137 ISDGSKCDIARIQMMF------GS----------------KPTVAVQDPSYPVYVDTSVMMGMTGDHNGT---GF----- 186 (449)
T ss_dssp EESCHHHHHHHHHHHH------CS----------------SSCEEEEESCCTHHHHHHHHHTCSCCBCSS---SB-----
T ss_pred EccCHHHHHHHHHHHh------CC----------------CCEEEEcCCCChhHHHHHHHcCCccccccc---cc-----
Confidence 9999999999872222 11 247999999999876544333211001100 00
Q ss_pred cccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 005009 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (719)
Q Consensus 546 ~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv 625 (719)
. ....++.. +. +.+ ..+ +++ ..++.+|++
T Consensus 187 --~---------~~~~~~~~----------------~~-~~~--~~~---------------~~~------~~~~~~v~l 215 (449)
T 3qgu_A 187 --D---------GIEYMVCN----------------PD-NHF--FPD---------------LSK------AKRTDIIFF 215 (449)
T ss_dssp --T---------TEEEEECC----------------GG-GTT--CCC---------------GGG------CCCCSEEEE
T ss_pred --c---------eeEEEecc----------------cc-cCC--cCC---------------hhH------cCCCCEEEE
Confidence 0 01111111 00 000 000 111 124557777
Q ss_pred ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc----CCCcceeeehhccC-CCccchh
Q 005009 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL----GCVPDIACYGKLLT-GGVIPLA 699 (719)
Q Consensus 626 EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~----gv~PDIvtlgK~Lg-gG~~Pls 699 (719)
+.. +...|.+. +.+.+++|.++|++||++||+||++++|++.|.. .....+ ++..++.+++|.+| .| +++|
T Consensus 216 ~~p-~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G 292 (449)
T 3qgu_A 216 CSP-NNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG-VRLG 292 (449)
T ss_dssp ESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTT-CCCE
T ss_pred eCC-CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcc-ceeE
Confidence 765 77778755 7888999999999999999999999999887742 233222 33455678999998 88 7999
Q ss_pred eeEeCHHHHh
Q 005009 700 ATLATNAVFD 709 (719)
Q Consensus 700 avl~~~~i~~ 709 (719)
++++++++++
T Consensus 293 ~~~~~~~~~~ 302 (449)
T 3qgu_A 293 WTVVPKALKY 302 (449)
T ss_dssp EEECCTTCBC
T ss_pred EEecCHHHHh
Confidence 9999998765
No 106
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.39 E-value=4.7e-12 Score=138.92 Aligned_cols=224 Identities=10% Similarity=-0.001 Sum_probs=135.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhh------------hcccccCCCCCChHHHHHHHHHHhccC----CCCCCe
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAA------------RFGHVMFPENVYEPALECAELLLQGVG----KGWASR 463 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~------------~~~~~~~~~~~~~~~~~Lae~L~~~~~----~~~~~r 463 (719)
.++|+.++. +.+| +|.+.+++.++.. ............+....+++.+.+..+ -. .+.
T Consensus 37 ~~i~l~~~~--~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~~~ 110 (428)
T 1iay_A 37 GVIQMGLAE--NQLC---LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFD-PER 110 (428)
T ss_dssp SBEECSSCC--CCSS---HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCC-TTS
T ss_pred ceeeecccc--chhh---HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC-hhh
Confidence 577877543 3443 5688888886531 111111011123334444444443222 11 367
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccC
Q 005009 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (719)
Q Consensus 464 v~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~ 543 (719)
++++++|++|++.+++.+. ..| .+|+....+||+.........|..
T Consensus 111 i~~~~G~~~ai~~~~~~~~-----~~g----------------d~Vl~~~p~y~~~~~~~~~~~g~~------------- 156 (428)
T 1iay_A 111 VVMAGGATGANETIIFCLA-----DPG----------------DAFLVPSPYYPAFNRDLRWRTGVQ------------- 156 (428)
T ss_dssp CEEEEHHHHHHHHHHHHHC-----CTT----------------CEEEEESSCCTTHHHHTTTTTCCE-------------
T ss_pred EEEccChHHHHHHHHHHhC-----CCC----------------CeEEEccCCCcchHHHHHHhcCCE-------------
Confidence 9999999999999999871 111 479999999998644322222211
Q ss_pred CCcccCCCcccccCcceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 005009 544 RGLFLDPPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (719)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iA 621 (719)
...++.. +.| . -| .+.+++.+.+.. ....++.
T Consensus 157 ---------------~~~v~~~~~~~~------------~---------~d--------~~~l~~~l~~~~--~~~~~~~ 190 (428)
T 1iay_A 157 ---------------LIPIHCESSNNF------------K---------IT--------SKAVKEAYENAQ--KSNIKVK 190 (428)
T ss_dssp ---------------EEEECCCTTTTT------------C---------CC--------HHHHHHHHHHHH--HTTCCEE
T ss_pred ---------------EEEeecCCccCC------------c---------CC--------HHHHHHHHHHHH--hcCCceE
Confidence 0011110 000 0 01 244555554210 0233577
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-ccccc-------CCCcc----eeeehh
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-------GCVPD----IACYGK 689 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~-------gv~PD----IvtlgK 689 (719)
+|++... +...|.+ .|.+++++|.++|++||+++|+||++++|++.|..+ ....+ ++.+| +.+++|
T Consensus 191 ~v~l~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK 268 (428)
T 1iay_A 191 GLILTNP-SNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSK 268 (428)
T ss_dssp EEEEESS-CTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTT
T ss_pred EEEEcCC-CCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchh
Confidence 7776654 6767875 488999999999999999999999999987766532 22112 34488 558999
Q ss_pred ccC-CCccchheeEe-CHHHHhhhc
Q 005009 690 LLT-GGVIPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 690 ~Lg-gG~~Plsavl~-~~~i~~~~~ 712 (719)
++| .| +++|++++ ++++++.+.
T Consensus 269 ~~g~~G-lr~G~~~~~~~~~~~~~~ 292 (428)
T 1iay_A 269 DMGLPG-FRVGIIYSFNDDVVNCAR 292 (428)
T ss_dssp TSSCGG-GCEEEEEESCHHHHHHHH
T ss_pred hcCCCC-ceEEEEEeCCHHHHHHHH
Confidence 998 78 79999999 688887653
No 107
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.39 E-value=2.2e-12 Score=140.29 Aligned_cols=210 Identities=14% Similarity=0.043 Sum_probs=141.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhc-ccccC----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~-~~~~~----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||+.+ .|+. +|+|.+|+.++++.. ..... .....+...++.++|++.++.+ .+.++|+++|++|+
T Consensus 30 ~yld~~~------~~~~-~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 101 (416)
T 1qz9_A 30 IYLDGNS------LGAR-PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINL 101 (416)
T ss_dssp EECCTTT------SCCC-BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHH
T ss_pred EeecCCC------cCCC-cHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCC-cccEEEeCChhHHH
Confidence 8888754 4788 999999999999753 21110 0011356678999999988753 35899999999999
Q ss_pred HHHHHHHHHHhhc--cccccccccCCCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 475 EIALKMAFRKFSF--DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 475 E~AlKlA~r~~~~--~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+.|++.++ .+.. .. + .++|.....+|+.+..++. +..... .+
T Consensus 102 ~~al~~~~-~~~~~~~~---------------g-d~vii~~~~~~~~~~~~~~~~~~~~~-~g----------------- 146 (416)
T 1qz9_A 102 FKVLSAAL-RVQATRSP---------------E-RRVIVTETSNFPTDLYIAEGLADMLQ-QG----------------- 146 (416)
T ss_dssp HHHHHHHH-HHHHHHST---------------T-CCEEEEETTSCHHHHHHHHHHHHHHC-SS-----------------
T ss_pred HHHHHhhc-ccccccCC---------------C-CcEEEEcCCCCCchHHHHHHHHHHhc-CC-----------------
Confidence 99999873 2210 11 1 2577788889987655432 110000 00
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
...+.+| . .+.+++.+. .++++|+++++ ++
T Consensus 147 -------~~~~~v~--------------~--------------------~~~l~~~i~--------~~~~~v~~~~~-~n 176 (416)
T 1qz9_A 147 -------YTLRLVD--------------S--------------------PEELPQAID--------QDTAVVMLTHV-NY 176 (416)
T ss_dssp -------CEEEEES--------------S--------------------GGGHHHHCS--------TTEEEEEEESB-CT
T ss_pred -------ceEEEeC--------------c--------------------HHHHHHHhC--------CCceEEEEecc-cc
Confidence 0001111 0 023455553 26789999997 89
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccch-heeEeCHHHH
Q 005009 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPL-AATLATNAVF 708 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Pl-savl~~~~i~ 708 (719)
..|.+.+ +++|.++|++||+++|+||+|+ +|... +..+.+ .+|++++ +|.+++| ..+ |+++++++++
T Consensus 177 ptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~~K~l~~g-~~~~g~l~~~~~~~ 246 (416)
T 1qz9_A 177 KTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADYAIGCTYKYLNGG-PGSQAFVWVSPQLC 246 (416)
T ss_dssp TTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEECSSSTTCCC-TTCCCEEEECTTTT
T ss_pred CcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCEEEecCcccCCCC-CCCeEEEEECHHHH
Confidence 8899887 8999999999999999999996 55443 222333 4899876 5999887 576 9999999987
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 247 ~~l~ 250 (416)
T 1qz9_A 247 DLVP 250 (416)
T ss_dssp TTSC
T ss_pred hccC
Confidence 6654
No 108
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.38 E-value=5.8e-12 Score=136.58 Aligned_cols=215 Identities=6% Similarity=-0.056 Sum_probs=141.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC---CCCC---ChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF---PENV---YEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~---~~~~---~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.+++|.++. .++. +|+|.+|+.++++.+..... ..+. ++...++.++|+++++....+.++|+++|++|
T Consensus 28 ~~i~l~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a 102 (420)
T 1t3i_A 28 PLVYLDNAA----TSQK-PRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEA 102 (420)
T ss_dssp ECEECBTTT----CCCC-CHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred ceEEecCCc----cCCC-CHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHH
Confidence 566665543 3578 99999999999987431100 0011 24467888999998874113689999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc---ccCCCCCCCCCCCCCccCCCcccCC
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME---AQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals---lt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++.+++.+ +..... ...+|+....+||+....... ..|..
T Consensus 103 ~~~~~~~~-~~~~~~----------------~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~-------------------- 145 (420)
T 1t3i_A 103 INLVAYSW-GMNNLK----------------AGDEIITTVMEHHSNLVPWQMVAAKTGAV-------------------- 145 (420)
T ss_dssp HHHHHHHT-HHHHCC----------------TTCEEEEETTCCGGGTHHHHHHHHHHCCE--------------------
T ss_pred HHHHHHHh-hhcccC----------------CCCEEEECcchhHHHHHHHHHHHHhcCcE--------------------
Confidence 99999988 321111 124799999999995421111 11110
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.+..+. .| .+.+++.+. .++++|++++. +
T Consensus 146 --------~~~v~~~~~~~-----------~d------------------~~~l~~~l~--------~~~~~v~~~~~-~ 179 (420)
T 1t3i_A 146 --------LKFVQLDEQES-----------FD------------------LEHFKTLLS--------EKTKLVTVVHI-S 179 (420)
T ss_dssp --------EEEECBCTTSS-----------BC------------------HHHHHHHCC--------TTEEEEEEESB-C
T ss_pred --------EEEeccCCCCC-----------cC------------------HHHHHHhhC--------CCceEEEEeCC-c
Confidence 01111111100 01 245666664 36789999997 8
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHH
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~ 708 (719)
+..|.+.+ +++|.++|++||+++|+||+++ +|... +....+ .+|+++++ |.+| + ..+|+++++++++
T Consensus 180 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~di~~~s~sK~~~-~-~g~G~~~~~~~~~ 248 (420)
T 1t3i_A 180 NTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLI--DCDWLVASGHKMCA-P-TGIGFLYGKEEIL 248 (420)
T ss_dssp TTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEEEGGGTTS-C-TTCEEEEECHHHH
T ss_pred ccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--Cchhhc--CCCEEEEehhhhcC-C-CceEEEEEchHHH
Confidence 88898887 8999999999999999999996 44432 223333 38999776 9554 3 2489999999998
Q ss_pred hhhcC
Q 005009 709 DSFVG 713 (719)
Q Consensus 709 ~~~~~ 713 (719)
+.+..
T Consensus 249 ~~~~~ 253 (420)
T 1t3i_A 249 EAMPP 253 (420)
T ss_dssp HHSCC
T ss_pred hhcCc
Confidence 87643
No 109
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.38 E-value=9.5e-13 Score=142.13 Aligned_cols=205 Identities=16% Similarity=0.074 Sum_probs=141.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCC-eEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~-rv~f~~SGsEA~E~Al 478 (719)
.|+|.. +-++. +|++.+|+.+++.. +.. ....+...+++++|++..+.+ .+ .++|+++|++|++.++
T Consensus 35 ~~l~~~------~~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 35 RLLLGP------GPSNA-HPSVLQAMNVSPVG--HLD--PAFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CEECSS------SCCCC-CHHHHHHHSSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHH
T ss_pred ceeccC------CCCCC-CHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCchHHHHHHHH
Confidence 688844 35688 99999999988754 110 112356778889998887743 35 7999999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
+.+. .. ..+|+....+||+.+...+ ...|..
T Consensus 103 ~~~~-----~~----------------gd~Vl~~~~~~~~~~~~~~~~~~g~~--------------------------- 134 (393)
T 1vjo_A 103 ANAV-----EP----------------GDVVLIGVAGYFGNRLVDMAGRYGAD--------------------------- 134 (393)
T ss_dssp HHHC-----CT----------------TCEEEEEESSHHHHHHHHHHHHTTCE---------------------------
T ss_pred Hhcc-----CC----------------CCEEEEEcCChhHHHHHHHHHHcCCc---------------------------
Confidence 9872 11 2479999999998432211 111100
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...++.+..+ ..| .+.+++.+.+ . ++.+|++++. +...|.+.
T Consensus 135 -~~~v~~~~~~-----------~~d------------------~~~l~~~l~~-----~--~~~~v~~~~~-~nptG~~~ 176 (393)
T 1vjo_A 135 -VRTISKPWGE-----------VFS------------------LEELRTALET-----H--RPAILALVHA-ETSTGARQ 176 (393)
T ss_dssp -EEEEECCTTC-----------CCC------------------HHHHHHHHHH-----H--CCSEEEEESE-ETTTTEEC
T ss_pred -eEEEecCCCC-----------CCC------------------HHHHHHHHhh-----C--CceEEEEecc-CCCcceec
Confidence 0111211110 011 2556677752 1 4568889987 88889887
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhc
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+ +++|.++|++||+++|+||+++ +|... + ......+|+++.+ |.++++. ++|++++++++++.+.
T Consensus 177 ~----l~~i~~l~~~~~~~li~Dea~~-~g~~~--~--~~~~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~ 243 (393)
T 1vjo_A 177 P----LEGVGELCREFGTLLLVDTVTS-LGGVP--I--FLDAWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQ 243 (393)
T ss_dssp C----CTTHHHHHHHHTCEEEEECTTT-TTTSC--C--CTTTTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHH
T ss_pred c----HHHHHHHHHHcCCEEEEECCcc-ccCcC--C--cccccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHh
Confidence 6 8999999999999999999997 76543 2 2223568999766 9999884 8999999999988763
No 110
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.37 E-value=9.5e-13 Score=141.37 Aligned_cols=211 Identities=11% Similarity=0.024 Sum_probs=143.0
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC---CCC--ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP---ENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~---~~~--~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|+|.. ..|+. +|+|.+|+.++++...+.... .+. .+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 18 i~l~~~------~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 89 (390)
T 1elu_A 18 TYFNFG------GQGIL-PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGC 89 (390)
T ss_dssp EECCTT------TCCCC-CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHH
T ss_pred EEecCC------ccCCC-CHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCC-HHHEEEeCChHHHH
Confidence 566642 37898 999999999998875421100 011 256778999999988743 35899999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc---cCCCCCCCCCCCCCccCCCcccCCC
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl---t~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+.+++.+ + . . ...+|+....+||+.......+ .|..
T Consensus 90 ~~~~~~~-~-~--~----------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~--------------------- 128 (390)
T 1elu_A 90 DIVLWGL-D-W--H----------------QGDEILLTDCEHPGIIAIVQAIAARFGIT--------------------- 128 (390)
T ss_dssp HHHHHHS-C-C--C----------------TTCEEEEETTCCHHHHHHHHHHHHHHCCE---------------------
T ss_pred HHHHhCC-C-C--C----------------CCCEEEEecCcccHHHHHHHHHHHHhCcE---------------------
Confidence 9999987 2 1 1 1248999999999865432111 1110
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
...++.+.. ++ + .. + .+.+++.+. .++++|++++. +.
T Consensus 129 -------~~~v~~~~~-------------~~----~--~~---d-----~~~l~~~i~--------~~~~~v~~~~~-~n 165 (390)
T 1elu_A 129 -------YRFFPVAAT-------------LN----Q--GD---A-----AAVLANHLG--------PKTRLVILSHL-LW 165 (390)
T ss_dssp -------EEEECCGGG-------------SS----S--SC---H-----HHHHHTTCC--------TTEEEEEEESB-CT
T ss_pred -------EEEEcCCCC-------------CC----c--cc---h-----HHHHHHhcC--------CCceEEEEecc-cc
Confidence 011111100 00 0 00 0 244554442 36889999997 88
Q ss_pred CCccccCCHHHHHHHHHHHH----hcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCH
Q 005009 632 AGGMHMVDPLFQRILVKECQ----NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATN 705 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~----k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~ 705 (719)
..|.+.+ +++|.++|+ +||+++|+||+++ +|.+.. +.....+|+++ ++|.+.|| ..+|++++++
T Consensus 166 ptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~~----~~~~~~~d~~~~s~~K~~~~~-~g~G~~~~~~ 235 (390)
T 1elu_A 166 NTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLPL----DFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHG 235 (390)
T ss_dssp TTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBCC----CTTTSCCSEEEEESSSTTCCC-TTCEEEEECT
T ss_pred CCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcCC----ChhhcCCCEEEccccccccCC-CceEEEEECH
Confidence 8898887 999999999 9999999999996 665432 11234689987 99988888 5789999999
Q ss_pred HHHhhhc
Q 005009 706 AVFDSFV 712 (719)
Q Consensus 706 ~i~~~~~ 712 (719)
++++.+.
T Consensus 236 ~~~~~~~ 242 (390)
T 1elu_A 236 DCLGEIN 242 (390)
T ss_dssp TTGGGCC
T ss_pred HhHhhcC
Confidence 9887764
No 111
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.37 E-value=3.8e-12 Score=134.89 Aligned_cols=211 Identities=9% Similarity=-0.006 Sum_probs=133.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~Al 478 (719)
.+|||.++ +.++. +|+|++|+.+++.. +.. .+ ..+...+++++|++..+. -..++|++||++|++.|+
T Consensus 8 ~~id~~~~----~~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~~l~~~la~~~g~--~~~v~~~~~gt~a~~~al 76 (356)
T 1v72_A 8 PALGFSSD----NIAGA-SPEVAQALVKHSSG--QAG--PYGTDELTAQVKRKFCEIFER--DVEVFLVPTGTAANALCL 76 (356)
T ss_dssp CCCBCSCG----GGCCC-CHHHHHHHHHTTSS--CCC--STTCSHHHHHHHHHHHHHHTS--CCEEEEESCHHHHHHHHH
T ss_pred ceEeeccC----CccCC-CHHHHHHHHhhccC--ccc--ccccchHHHHHHHHHHHHhCC--CCcEEEeCCccHHHHHHH
Confidence 68999875 45789 99999999998743 211 22 356778999999998873 235899999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccc--cccc--CCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ga--lslt--~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
+.++ +. .+.|.....+|+.+..+ +... |..
T Consensus 77 ~~~~-----~~-----------------gd~vi~~~~~~~~~~~~~~~~~~~~g~~------------------------ 110 (356)
T 1v72_A 77 SAMT-----PP-----------------WGNIYCHPASHINNDECGAPEFFSNGAK------------------------ 110 (356)
T ss_dssp HTSC-----CT-----------------TEEEEECTTSHHHHSSTTHHHHHTTSCE------------------------
T ss_pred HHhc-----CC-----------------CCEEEEcCccchhhhhchHHHHHhCCcE------------------------
Confidence 9871 11 23444556677765544 3322 210
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHH-HHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ-NLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~-~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
...++.++ + .-| .+.+++ .+.+.. ...+.++++|++++. + ..
T Consensus 111 ----~~~v~~~~-~-----------~~d------------------~~~l~~~~i~~~~-~~~~~~~~~v~~~~~-~-~t 153 (356)
T 1v72_A 111 ----LMTVDGPA-A-----------KLD------------------IVRLRERTREKVG-DVHTTQPACVSITQA-T-EV 153 (356)
T ss_dssp ----EEECCCGG-G-----------CCC------------------HHHHHHHTTSSTT-CTTSCEEEEEEEESS-C-TT
T ss_pred ----EEEecCCC-C-----------eEc------------------HHHHHHHhhhcch-hhccCCceEEEEEcC-C-CC
Confidence 00111110 0 001 245666 664210 012237899999996 6 47
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc--cCccccccccC--CCccee--eehhccCCCccchh--eeEeCH
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGVETTADLLG--CVPDIA--CYGKLLTGGVIPLA--ATLATN 705 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR--tG~~~a~e~~g--v~PDIv--tlgK~LggG~~Pls--avl~~~ 705 (719)
|. ++|.+++++|.++|++||++||+||++..++- .|.. ...++ ...|++ +++|. | .|+| ++++++
T Consensus 154 G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g-~~~G~g~~~~~~ 226 (356)
T 1v72_A 154 GS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G-VLAAEAIVLFNT 226 (356)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T-CSSCEEEEESSG
T ss_pred Cc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C-CcCccEEEEECH
Confidence 76 46889999999999999999999999974311 1211 11111 135665 47887 3 3888 566688
Q ss_pred HHHhhh
Q 005009 706 AVFDSF 711 (719)
Q Consensus 706 ~i~~~~ 711 (719)
++++.+
T Consensus 227 ~~~~~~ 232 (356)
T 1v72_A 227 SLATEM 232 (356)
T ss_dssp GGHHHH
T ss_pred HHHhhH
Confidence 887654
No 112
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.37 E-value=2.5e-12 Score=137.68 Aligned_cols=215 Identities=10% Similarity=0.015 Sum_probs=139.8
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChH
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGs 471 (719)
.+|+ .+|||.++.. .++ . +|+|.+|+.++++..+... ..+..+...+|.++|++..+-. .+.++|+++|+
T Consensus 23 ~~~~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~lr~~la~~~g~~-~~~i~~t~g~~ 92 (360)
T 3hdo_A 23 PDIA----SWIKLNTNEN--PYP-P-SPEVVKAILEELGPDGAAL-RIYPSASSQKLREVAGELYGFD-PSWIIMANGSD 92 (360)
T ss_dssp SCCT----TSEECSSCCC--SSC-C-CHHHHHHHHHHHTTTCGGG-GSCCCSSCHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred cccc----ceeeccCCCC--CCC-C-CHHHHHHHHHHHhcccchh-hcCCCCchHHHHHHHHHHhCcC-cceEEEcCCHH
Confidence 4566 8999988653 343 5 8999999999998742110 0122222357888888877632 36899999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+|++.+++... +. ..+|+....+||+........ |..
T Consensus 93 ~al~~~~~~l~-----~~----------------gd~Vl~~~p~~~~~~~~~~~~-g~~--------------------- 129 (360)
T 3hdo_A 93 EVLNNLIRAFA-----AE----------------GEEIGYVHPSYSYYGTLAEVQ-GAR--------------------- 129 (360)
T ss_dssp HHHHHHHHHHC-----CT----------------TCEEEEESSSCTHHHHHHHHH-TCE---------------------
T ss_pred HHHHHHHHHHh-----CC----------------CCEEEEcCCChHHHHHHHHHC-CCE---------------------
Confidence 99999999761 11 147999999999854332221 110
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
...++..+.+ . ++ .+.+ ....+ +++++.. +.
T Consensus 130 -------~~~v~~~~~~--------------------------~--------~~-~l~~----~~~~~--~v~i~~p-~n 160 (360)
T 3hdo_A 130 -------VRTFGLTGDF--------------------------R--------IA-GFPE----RYEGK--VFFLTTP-NA 160 (360)
T ss_dssp -------EEEECBCTTS--------------------------S--------BT-TCCS----SBCSS--EEEEESS-CT
T ss_pred -------EEEeeCCCCC--------------------------C--------HH-HHHh----hcCCC--EEEEeCC-CC
Confidence 0011111000 0 00 1111 11123 4555544 78
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC-CCccchheeEeCHHHHhh
Q 005009 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
..|.+.+ .++++++|+++|+++|+||++++|+..+.....+.++....+.+++|.+| +| +++|++++++++.+.
T Consensus 161 ptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~ 235 (360)
T 3hdo_A 161 PLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAG-MRIGLAIARPEVIAA 235 (360)
T ss_dssp TTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTT-SCCEEEECCHHHHHH
T ss_pred CCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCc-cceeeEeeCHHHHHH
Confidence 8888888 67899999999999999999998854443333344455556668999997 67 799999999999887
Q ss_pred hcC
Q 005009 711 FVG 713 (719)
Q Consensus 711 ~~~ 713 (719)
+..
T Consensus 236 ~~~ 238 (360)
T 3hdo_A 236 LDK 238 (360)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 113
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.35 E-value=3.2e-12 Score=136.51 Aligned_cols=213 Identities=11% Similarity=0.070 Sum_probs=139.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc---cc---cCCCCCChHHHHHHHH-HHhccCCCCCCeEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HV---MFPENVYEPALECAEL-LLQGVGKGWASRAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~---~~---~~~~~~~~~~~~Lae~-L~~~~~~~~~~rv~f~~SGsE 472 (719)
.|||+.+ +.++. +|++.+|+.+++.... +. .......+...++.++ |++.++. +.++|+++|++
T Consensus 10 i~ld~~~-----~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~---~~v~~~~g~t~ 80 (371)
T 2e7j_A 10 INIDPLQ-----TGGKL-TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC---DVARVTNGARE 80 (371)
T ss_dssp EECCHHH-----HTCCC-CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS---SEEEEESSHHH
T ss_pred EEecccc-----cCCCC-CHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC---CEEEEeCChHH
Confidence 5777633 45778 9999999999987642 10 1111235667889999 9998874 38999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++.++ +. ..+|+....+||+.... +...|..
T Consensus 81 a~~~~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~-~~~~g~~---------------------- 116 (371)
T 2e7j_A 81 AKFAVMHSLA-----KK----------------DAWVVMDENCHYSSYVA-AERAGLN---------------------- 116 (371)
T ss_dssp HHHHHHHHHC-----CT----------------TCEEEEETTCCHHHHHH-HHHTTCE----------------------
T ss_pred HHHHHHHHHh-----CC----------------CCEEEEccCcchHHHHH-HHHcCCe----------------------
Confidence 9999999872 11 24799999999986544 2222210
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
...++.|. +. + + .-| .+.+++.+.+. ...+++++|++++. +..
T Consensus 117 ------~~~v~~~~--------------~~-~--~--~~d--------~~~l~~~l~~~---~~~~~~~~v~~~~~-~np 159 (371)
T 2e7j_A 117 ------IALVPKTD--------------YP-D--Y--AIT--------PENFAQTIEET---KKRGEVVLALITYP-DGN 159 (371)
T ss_dssp ------EEEECCCC--------------TT-T--C--CCC--------HHHHHHHHHHH---TTTSCEEEEEEESS-CTT
T ss_pred ------EEEeeccc--------------CC-C--C--CcC--------HHHHHHHHHhh---cccCCeEEEEEECC-CCC
Confidence 01111000 00 0 0 001 24566666531 11146888999997 899
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHhh
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~ 710 (719)
.|.+.+ +++|.++|++||+++|+||+++. |..+ +....+ .+|+++ ++|.+++| .++|++++++++++.
T Consensus 160 tG~~~~----~~~i~~~~~~~~~~li~D~a~~~-~~~~--~~~~~~--~~di~~~s~sK~~~~~-~~~G~~~~~~~~~~~ 229 (371)
T 2e7j_A 160 YGNLPD----VKKIAKVCSEYDVPLLVNGAYAI-GRMP--VSLKEI--GADFIVGSGHKSMAAS-GPIGVMGMKEEWAEI 229 (371)
T ss_dssp TCCCCC----HHHHHHHHHTTTCCEEEECTTTB-TTBC--CCHHHH--TCSEEEEEHHHHSSCC-SSCEEEEECTTTTTT
T ss_pred CcccCC----HHHHHHHHHHcCCeEEEECcccc-CCCC--CChhhc--CCCEEEecCCcCCCCC-CCcEEEEEechhhhh
Confidence 998887 69999999999999999999975 4443 223333 368774 59999998 499999999998776
Q ss_pred -hc
Q 005009 711 -FV 712 (719)
Q Consensus 711 -~~ 712 (719)
+.
T Consensus 230 ~~~ 232 (371)
T 2e7j_A 230 VLR 232 (371)
T ss_dssp TTC
T ss_pred hcc
Confidence 54
No 114
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.34 E-value=1.3e-11 Score=135.19 Aligned_cols=226 Identities=9% Similarity=-0.039 Sum_probs=142.5
Q ss_pred EEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-cccCC-CCCChHHHHHHHHHHhccCCC-CCCeEE
Q 005009 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFP-ENVYEPALECAELLLQGVGKG-WASRAY 465 (719)
Q Consensus 389 l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-~~~~~-~~~~~~~~~Lae~L~~~~~~~-~~~rv~ 465 (719)
+.+.+|+ .+|||.+|.. .++ . +|+|.+|+.+++.... ..... ....+....+++.+.+..+.. ..+.++
T Consensus 38 ~~~~~g~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~ 109 (437)
T 3g0t_A 38 LEKATGT----KFCRMEMGVP--GLP-A-PQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACV 109 (437)
T ss_dssp HHHHHTC----CCEECCCCSC--CSC-C-CHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred HHHhcCC----CEEeccCcCC--CCC-C-CHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEE
Confidence 4567788 9999999864 454 5 8999999999987522 11111 112334445555554332210 136899
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcce--EEEEEeCCcccCccccccccCCCCCCCCCCCCCccC
Q 005009 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL--KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (719)
Q Consensus 466 f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~--kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~ 543 (719)
|+++|++|++.+++.. ..+ +. .. +|++...+||+....+... |..
T Consensus 110 ~t~g~t~al~~~~~~l-~~~--~~----------------gd~~~Vl~~~p~~~~~~~~~~~~-g~~------------- 156 (437)
T 3g0t_A 110 PTVGSMQGCFVSFLVA-NRT--HK----------------NREYGTLFIDPGFNLNKLQCRIL-GQK------------- 156 (437)
T ss_dssp EESHHHHHHHHHHHHH-TTS--CT----------------TCSCCEEEEESCCHHHHHHHHHH-TCC-------------
T ss_pred EeCCHHHHHHHHHHHH-hcC--CC----------------CCccEEEEeCCCcHhHHHHHHHc-CCE-------------
Confidence 9999999999999987 100 11 13 6999999999854433221 110
Q ss_pred CCcccCCCcccccCcceeecC-cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 005009 544 RGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (719)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA 622 (719)
...++. ++.+ .. ..+.+++.++. .++.+
T Consensus 157 ---------------~~~v~~~~~~~--------------------------~~---d~~~l~~~l~~-------~~~~~ 185 (437)
T 3g0t_A 157 ---------------FESFDLFEYRG--------------------------EK---LREKLESYLQT-------GQFCS 185 (437)
T ss_dssp ---------------CEEEEGGGGCT--------------------------TH---HHHHHHHHHTT-------TCCCE
T ss_pred ---------------EEEEeecCCCC--------------------------cc---CHHHHHHHHhc-------CCceE
Confidence 001111 1000 00 13567777742 23444
Q ss_pred E-EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc---------ccccc-cCCCcceeeehhcc
Q 005009 623 L-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---------TTADL-LGCVPDIACYGKLL 691 (719)
Q Consensus 623 v-IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~---------~a~e~-~gv~PDIvtlgK~L 691 (719)
| |..| +...|.+. |.+.+++|.++|++||+++|+||++++|...|.. ..... .+....+.+++|.+
T Consensus 186 v~l~~p--~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 262 (437)
T 3g0t_A 186 IIYSNP--NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF 262 (437)
T ss_dssp EEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT
T ss_pred EEEeCC--CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC
Confidence 4 4566 57677655 6778999999999999999999999986554432 22221 23333355899999
Q ss_pred C-CCccchheeEeCHHHHh-h
Q 005009 692 T-GGVIPLAATLATNAVFD-S 710 (719)
Q Consensus 692 g-gG~~Plsavl~~~~i~~-~ 710 (719)
| .| +++|++++++++++ .
T Consensus 263 ~~~G-~r~G~~~~~~~~~~~~ 282 (437)
T 3g0t_A 263 SYAG-QRIGVLMISGKLYERE 282 (437)
T ss_dssp SCGG-GCCEEEEECHHHHHCB
T ss_pred CCcc-ceeEEEEECHHHhhhh
Confidence 8 78 79999999999988 6
No 115
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.34 E-value=4.9e-12 Score=135.59 Aligned_cols=206 Identities=15% Similarity=0.063 Sum_probs=138.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|+|.. ..++. +|++.+|+.+++.. +.. ....+...+++++|++..+....+.+++++||++|++.+++
T Consensus 21 ~~l~~~------~~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~ 89 (386)
T 2dr1_A 21 YKLFTA------GPVAC-FPEVLEIMKVQMFS--HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIR 89 (386)
T ss_dssp SEECCS------SSCCC-CHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHH
T ss_pred ceeecC------CCcCC-cHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHH
Confidence 577753 35677 99999999887653 110 01245677889999988774212469999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
... +. ..+|++...+|||.+...+ ...|..
T Consensus 90 ~l~-----~~----------------gd~vl~~~~~~~~~~~~~~~~~~g~~---------------------------- 120 (386)
T 2dr1_A 90 NGV-----SK----------------GGKVLVTIIGAFGKRYKEVVESNGRK---------------------------- 120 (386)
T ss_dssp HHS-----CT----------------TCEEEEEESSHHHHHHHHHHHHTTCE----------------------------
T ss_pred Hhh-----cC----------------CCeEEEEcCCchhHHHHHHHHHhCCc----------------------------
Confidence 762 11 2479999999998432211 111100
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
...++.+..+ ..| .+.+++.+++ ..++++|++++. ++..|.+.+
T Consensus 121 ~~~v~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~ 164 (386)
T 2dr1_A 121 AVVLEYEPGK-----------AVK------------------PEDLDDALRK------NPDVEAVTITYN-ETSTGVLNP 164 (386)
T ss_dssp EEEEECCTTC-----------CCC------------------HHHHHHHHHH------CTTCCEEEEESE-ETTTTEECC
T ss_pred eEEEecCCCC-----------CCC------------------HHHHHHHHhc------CCCCcEEEEEee-cCCcchhCC
Confidence 0111111100 011 2567777753 235778999987 888898876
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhh
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~ 711 (719)
+++|.++|++||+++|+||+++ +|... +.... ..+|+++.+ |.++++ .++|++++++++++.+
T Consensus 165 ----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~--~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~ 229 (386)
T 2dr1_A 165 ----LPELAKVAKEHDKLVFVDAVSA-MGGAD--IKFDK--WGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIA 229 (386)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTT-BTTBC--CCTTT--TTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHH
T ss_pred ----HHHHHHHHHHcCCeEEEEcccc-ccCcc--ccccc--cCCcEEEEeccccccCC-CceEEEEECHHHHHHH
Confidence 8999999999999999999996 43321 22222 257999777 999976 3689999999988766
No 116
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.33 E-value=1.6e-11 Score=133.86 Aligned_cols=227 Identities=11% Similarity=0.021 Sum_probs=140.7
Q ss_pred eeeeccccccccCCCCC-CCHHHHHHHHHhhhh--cccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDAT-LQIELARDMGYTAAR--FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~-~hP~V~~Av~~q~~~--~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~ 476 (719)
.+||+..|....+-|+- ..|.|.+|+.+.... ..+.. .....+...++++.+.+..+....+.++++++|++|++.
T Consensus 38 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~-~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~ 116 (413)
T 3t18_A 38 AVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAP-IEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRS 116 (413)
T ss_dssp GCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCC-TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHH
T ss_pred ceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCC-CCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHH
Confidence 67888776543333331 157888887764432 22221 123345566777777665432112389999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... ..| ..|+....+|++..... ...|..
T Consensus 117 ~~~~~~-----~~g----------------d~Vl~~~p~~~~~~~~~-~~~g~~-------------------------- 148 (413)
T 3t18_A 117 AIFSYL-----DEG----------------DPLICHDYYWAPYRKIC-EEFGRN-------------------------- 148 (413)
T ss_dssp HHHHHC-----CSS----------------CEEEEESSCCTHHHHHH-HHHTCE--------------------------
T ss_pred HHHHhc-----CCC----------------CEEEECCCCcccHHHHH-HHhCCe--------------------------
Confidence 998661 111 36888888777643322 222210
Q ss_pred CcceeecC-cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCc
Q 005009 557 NSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGG 634 (719)
Q Consensus 557 ~~~~~~~~-P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG 634 (719)
...++. ++.+ .-| .+.+++.+.+. ..+...++++++ |. +...|
T Consensus 149 --~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~~---~~~~~~~~vi~~~p~-~NPtG 193 (413)
T 3t18_A 149 --FKTFEFFTDDF---------------------AFN--------IDVYKEAIDEG---IRDSDRIASLINSPG-NNPTG 193 (413)
T ss_dssp --EEEECCBCTTS---------------------SBC--------HHHHHHHHHHH---HHHCSEEEEEEECSS-CTTTC
T ss_pred --EEEeeccCCCC---------------------CcC--------HHHHHHHHHHH---hhcCCCEEEEEeCCC-CCCCC
Confidence 011111 0000 001 24455555420 001234466666 64 78888
Q ss_pred cccCCHHHHHHHHHHHH------hcCCcEEEeccccCccccCc---cccccccCCCcce---e--eehhccC-CCccchh
Q 005009 635 MHMVDPLFQRILVKECQ------NRKIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI---A--CYGKLLT-GGVIPLA 699 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~------k~gilLI~DEVqTGfGRtG~---~~a~e~~gv~PDI---v--tlgK~Lg-gG~~Pls 699 (719)
.+. +.+.+++|.++|+ +||+++|+||++++|+++|. .+.....++.+|+ + +++|.+| .| +++|
T Consensus 194 ~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~riG 271 (413)
T 3t18_A 194 YSL-SDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYG-LRSG 271 (413)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGG-GCCE
T ss_pred CCC-CHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCcC-cCcE
Confidence 766 5666999999999 99999999999999999886 2334444566773 3 7999999 78 7999
Q ss_pred eeEe---CHHHHhhhc
Q 005009 700 ATLA---TNAVFDSFV 712 (719)
Q Consensus 700 avl~---~~~i~~~~~ 712 (719)
++++ ++++++.+.
T Consensus 272 ~~~~~~~~~~~~~~~~ 287 (413)
T 3t18_A 272 AAVGISSSKEIIEEFE 287 (413)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEecCCHHHHHHHH
Confidence 9999 899888764
No 117
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.32 E-value=5.8e-12 Score=139.07 Aligned_cols=164 Identities=12% Similarity=-0.042 Sum_probs=119.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.+++++||++|++.|++.+. + ...+||+...+||+.
T Consensus 55 ~~~~~~~~l~~~la~~~g~---~~~v~~~sGt~A~~~~l~~~~-----~----------------~gd~vi~~~~~~~~~ 110 (421)
T 2ctz_A 55 IMNPTVDVLEKRLAALEGG---KAALATASGHAAQFLALTTLA-----Q----------------AGDNIVSTPNLYGGT 110 (421)
T ss_dssp TBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----C----------------TTCEEEECSCCCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CceEEecCHHHHHHHHHHHHh-----C----------------CCCEEEEeCCCchHH
Confidence 4567888999999999874 467889999999999999761 1 124799999999986
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC-cchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
......+... . |.....+ | .+|
T Consensus 111 ~~~~~~~~~~---~------------------------g~~~~~~~~--------------~~d---------------- 133 (421)
T 2ctz_A 111 FNQFKVTLKR---L------------------------GIEVRFTSR--------------EER---------------- 133 (421)
T ss_dssp HHHHHTHHHH---T------------------------TCEEEECCT--------------TCC----------------
T ss_pred HHHHHHHHHH---c------------------------CCEEEEECC--------------CCC----------------
Confidence 5443221100 0 0000111 1 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+|+++|..+..+
T Consensus 134 --~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~g~~~~~~----- 193 (421)
T 2ctz_A 134 --PEEFLALTD--------EKTRAWWVESI-GNPALNIPD----LEALAQAAREKGVALIVDNTFGMGGYLLRPL----- 193 (421)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGGGTSCCGG-----
T ss_pred --HHHHHHhhc--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccccCCcc-----
Confidence 245666664 36889999998 999998887 9999999999999999999998888766654
Q ss_pred CCCccee--eehhccCCCccchheeEeC
Q 005009 679 GCVPDIA--CYGKLLTGGVIPLAATLAT 704 (719)
Q Consensus 679 gv~PDIv--tlgK~LggG~~Plsavl~~ 704 (719)
+..+|++ +++|.+++...++|+++++
T Consensus 194 ~~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 194 AWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred ccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 3358998 7899999733688888775
No 118
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.32 E-value=1.7e-12 Score=139.42 Aligned_cols=196 Identities=13% Similarity=0.033 Sum_probs=131.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|+|.+|+.+++.. +.. ....+...++.++|++.++...-+.++|++||++|++.|++.+. .
T Consensus 35 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-----~--------- 96 (393)
T 3kgw_A 35 APRVLAAGSLRMIG--HMQ--KEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-----E--------- 96 (393)
T ss_dssp CHHHHHHTTCCCCC--TTS--HHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-----C---------
T ss_pred CHHHHHHhcccccC--ccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-----C---------
Confidence 79999998876532 111 01134567888899888764322369999999999999999771 1
Q ss_pred CCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
...+||....+|||.....+ ...|.. ...++.+...
T Consensus 97 -------~gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~~~~~~~~-------- 133 (393)
T 3kgw_A 97 -------PGDSFLTGTNGIWGMRAAEIADRIGAR----------------------------VHQMIKKPGE-------- 133 (393)
T ss_dssp -------TTCEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred -------CCCEEEEEeCCchhHHHHHHHHHcCCc----------------------------eEEEeCCCCC--------
Confidence 12478888888887432211 111110 0111111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+.+ .++.+|++++. ++..|.+.+ +++|+++|++||++
T Consensus 134 ---~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 180 (393)
T 3kgw_A 134 ---HYT------------------LQEVEEGLAQ-------HKPVLLFLVHG-ESSTGVVQP----LDGFGELCHRYQCL 180 (393)
T ss_dssp ---CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTCE
T ss_pred ---CCC------------------HHHHHHHHhh-------CCCcEEEEecc-CCcchhhcc----HHHHHHHHHHcCCE
Confidence 001 3567777763 25678999997 999998887 88999999999999
Q ss_pred EEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhcC
Q 005009 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 657 LI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+||+++ +| +..+..+.++ +|+++++ |+++|+ .++|++++++++++.+..
T Consensus 181 li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~-~g~g~~~~~~~~~~~~~~ 233 (393)
T 3kgw_A 181 LLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAP-PGISLISFNDKAKYKVYS 233 (393)
T ss_dssp EEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCC-SSCEEEEECHHHHHHHHT
T ss_pred EEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCC-CceeEEEECHHHHHHHhc
Confidence 99999996 33 3344444443 5777666 999887 679999999999888753
No 119
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.31 E-value=1e-11 Score=135.79 Aligned_cols=170 Identities=12% Similarity=0.026 Sum_probs=119.9
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.++|++||++|++.|++.+. +. ..+||+....|||.
T Consensus 63 ~~~~~~~~l~~~la~~~g~---~~~~~~~sGt~A~~~al~~~~-----~~----------------gd~Vi~~~~~y~~~ 118 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVEDA---AFGRAFSSGMAAADCALRAML-----RP----------------GDHVVIPDDAYGGT 118 (392)
T ss_dssp TCCHHHHHHHHHHHHHTTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CC----------------CCEEEEeCCCcchH
Confidence 4577888999999999873 589999999999999999761 11 24799999999874
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......... . . |.....+| .+|
T Consensus 119 ~~~~~~~~~-----~---------~-------------g~~~~~v~--------------~~d----------------- 140 (392)
T 3qhx_A 119 FRLIDKVFT-----G---------W-------------NVEYTPVA--------------LAD----------------- 140 (392)
T ss_dssp HHHHHHTGG-----G---------G-------------TCEEEEEC--------------TTC-----------------
T ss_pred HHHHHHHHH-----h---------c-------------CcEEEEeC--------------CCC-----------------
Confidence 222111100 0 0 00001111 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++++|++|++ ++..|.+.+ +++|.++|++||++||+||+|+.+ +.....+
T Consensus 141 -~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~------~~~~~~~ 200 (392)
T 3qhx_A 141 -LDAVRAAIR--------PTTRLIWVETP-TNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP------ALQQPLS 200 (392)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT------TTCCGGG
T ss_pred -HHHHHHhhC--------CCCeEEEEECC-CCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc------ccCChHH
Confidence 255666664 37899999997 899998877 999999999999999999999621 2334445
Q ss_pred CCcceee--ehhccCCC-ccchheeEeC-HHHHhhh
Q 005009 680 CVPDIAC--YGKLLTGG-VIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 680 v~PDIvt--lgK~LggG-~~Plsavl~~-~~i~~~~ 711 (719)
..+|+++ ++|.+|++ .+.+|+++++ +++++.+
T Consensus 201 ~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l 236 (392)
T 3qhx_A 201 LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSF 236 (392)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHH
T ss_pred hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHH
Confidence 6789997 99999874 2567888887 5777655
No 120
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.31 E-value=2.6e-12 Score=137.63 Aligned_cols=197 Identities=11% Similarity=0.051 Sum_probs=130.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCC-CCeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~-~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
+|+|++|+.+++.. +.. ....+...++.++|++..+.+. .+.+++++||++|++.+++.+. ..
T Consensus 31 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-----~~------- 94 (376)
T 3f0h_A 31 SEEVRAIGAEQVPY--FRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-----TK------- 94 (376)
T ss_dssp CHHHHHHHTSCCCC--CSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-----CT-------
T ss_pred cHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-----CC-------
Confidence 78999998887632 211 0112456678888888765421 1345668999999999999772 11
Q ss_pred CCCccccCcceEEEEEeCCcccCccccccc-cCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~galsl-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (719)
..+||+...+||+........ .+.. ...++.+..+.
T Consensus 95 ---------gd~vi~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~~------ 131 (376)
T 3f0h_A 95 ---------KDKVLVIDGGSFGHRFVQLCEIHEIP----------------------------YVALKLEHGKK------ 131 (376)
T ss_dssp ---------TCCEEEEESSHHHHHHHHHHHHTTCC----------------------------EEEEECCTTCC------
T ss_pred ---------CCeEEEEeCChhhHHHHHHHHHcCCc----------------------------eEEEeCCCCCC------
Confidence 247888988899854321111 1100 01111111110
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi 655 (719)
.| .+.+++.+ ..++.+|++++. ++..|.+.+ +++|.++|++||+
T Consensus 132 -----~d------------------~~~l~~~~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 175 (376)
T 3f0h_A 132 -----LT------------------KEKLYEYD--------NQNFTGLLVNVD-ETSTAVLYD----TMMIGEFCKKNNM 175 (376)
T ss_dssp -----CC------------------HHHHHTTT--------TSCCCEEEEESE-ETTTTEECC----HHHHHHHHHHTTC
T ss_pred -----CC------------------HHHHHHhh--------ccCceEEEEecc-cCCcceecC----HHHHHHHHHHcCC
Confidence 01 23454433 235778999987 899999887 9999999999999
Q ss_pred cEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 656 lLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|+||+|+++++. +..+.+|+...+.+++|.++|+ .+++++++++++++.+..
T Consensus 176 ~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~ 229 (376)
T 3f0h_A 176 FFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACP-PGISVIVLAPRGVERVEK 229 (376)
T ss_dssp EEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCC-SSCEEEEECHHHHHHHHT
T ss_pred EEEEEcCccccCcc---ccccccCccEEEecCcccccCC-CceEEEEECHHHHHHhhc
Confidence 99999999876553 4555666655555677999876 578999999999887753
No 121
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.31 E-value=5.4e-12 Score=136.67 Aligned_cols=207 Identities=9% Similarity=-0.004 Sum_probs=127.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhh-cccccC-CCC--CChHHHHHH----HHHHhccCCCCCCeEEEeCChH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAAR-FGHVMF-PEN--VYEPALECA----ELLLQGVGKGWASRAYFSDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~-~~~~~~-~~~--~~~~~~~La----e~L~~~~~~~~~~rv~f~~SGs 471 (719)
+|||+.++... - +|+|.+|+.++++. +.+... ..+ ..+....+. ++|++..+.. ...++++||+
T Consensus 24 ~~i~~~~~~~~-----~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~--~~~i~~~sGt 95 (407)
T 2dkj_A 24 EGLELIASENF-----V-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA--WANVQPHSGS 95 (407)
T ss_dssp TSEECCTTCCC-----C-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHH
T ss_pred cceeeccCCCC-----C-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC--cceEEecchH
Confidence 68998886543 3 89999999999864 322110 001 223222233 3777777632 2336788999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc--cccccccCCCCCCCCCCCCCccCCCcccC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT--LGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t--~galslt~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
+|++.|++.+. .. ..+|+....+||+.. ..++...|.. +
T Consensus 96 ~a~~~~~~~~~-----~~----------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~-----------------~- 136 (407)
T 2dkj_A 96 QANMAVYMALM-----EP----------------GDTLMGMDLAAGGHLTHGSRVNFSGKL-----------------Y- 136 (407)
T ss_dssp HHHHHHHHHHC-----CT----------------TCEEEEECGGGTCCGGGTCTTSHHHHH-----------------S-
T ss_pred HHHHHHHHHhc-----CC----------------CCEEEEecccccCccchHHHHHhcCce-----------------E-
Confidence 99999999871 11 247888888887752 2222222210 0
Q ss_pred CCcccccCcceeecCc---chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-
Q 005009 550 PPTVFMYNSKWILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII- 625 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P---~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv- 625 (719)
..++++ +.+ ..| .+.+++.+.+ .++++|++
T Consensus 137 ----------~~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-------~~~~~v~~~ 170 (407)
T 2dkj_A 137 ----------KVVSYGVRPDTE-----------LID------------------LEEVRRLALE-------HRPKVIVAG 170 (407)
T ss_dssp ----------EEEEECCCTTTS-----------SCC------------------HHHHHHHHHH-------HCCSEEEEC
T ss_pred ----------EEEecCCCcccC-----------ccC------------------HHHHHHHHhh-------cCCeEEEEe
Confidence 001110 000 011 2556667652 13456777
Q ss_pred ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC-ccccCccccccccCCCccee--eehhccCCCccchheeE
Q 005009 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATL 702 (719)
Q Consensus 626 EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG-fGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl 702 (719)
+|. +| ...+ +++|.++|++||+++|+||+|++ +...|..... +. .+|++ +++|+|+|+ .+|+++
T Consensus 171 ~p~-~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l~g~--~~G~~~ 237 (407)
T 2dkj_A 171 ASA-YP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP--LP-YAHVVTSTTHKTLRGP--RGGLIL 237 (407)
T ss_dssp CSS-CC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC--TT-TCSEEEEESSGGGCCC--SCEEEE
T ss_pred ccc-cC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCCc--cc-cccEEEEeccccCCCC--CceEEE
Confidence 887 54 3333 89999999999999999999985 5455653321 12 27988 789999976 469999
Q ss_pred eC-HHHHhhhc
Q 005009 703 AT-NAVFDSFV 712 (719)
Q Consensus 703 ~~-~~i~~~~~ 712 (719)
++ +++++.+.
T Consensus 238 ~~~~~~~~~l~ 248 (407)
T 2dkj_A 238 SNDPELGKRID 248 (407)
T ss_dssp ESCHHHHHHHH
T ss_pred ECCHHHHHHHH
Confidence 99 78887653
No 122
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.31 E-value=1.9e-11 Score=138.17 Aligned_cols=208 Identities=12% Similarity=-0.011 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHHhhhhcccccCCC-CCC----hHHHHHHHHHHhccCCCCC--CeE--EEeCChHHHHHHHHHHHHHHh
Q 005009 415 ATLQIELARDMGYTAARFGHVMFPE-NVY----EPALECAELLLQGVGKGWA--SRA--YFSDNGSTAIEIALKMAFRKF 485 (719)
Q Consensus 415 H~~hP~V~~Av~~q~~~~~~~~~~~-~~~----~~~~~Lae~L~~~~~~~~~--~rv--~f~~SGsEA~E~AlKlA~r~~ 485 (719)
|+ ++.+.+++.+++......+... ... +...++.++|++..+.. . +.+ +|+++|++|++.|++.+ +..
T Consensus 107 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~-~~~~~v~~~~t~ggt~a~~~al~a~-~~~ 183 (514)
T 3mad_A 107 HG-DEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVTSGGTESLLLAMKTY-RDW 183 (514)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGG-GGTSCCEEEEESSHHHHHHHHHHHH-HHH
T ss_pred CC-CCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCC-CccCCcceEEcCcHHHHHHHHHHHH-HHH
Confidence 45 7888888887776543322111 112 23345667777777632 1 356 99999999999999999 444
Q ss_pred hcc-ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC
Q 005009 486 SFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (719)
Q Consensus 486 ~~~-~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 564 (719)
.++ +| ..+.+||+...+|++. ..++...|.. ...++.
T Consensus 184 g~~~~g-------------~~~d~Vi~~~~~~~~~-~~~~~~~G~~----------------------------v~~v~~ 221 (514)
T 3mad_A 184 ARATKG-------------ITAPEAVVPVSAHAAF-DKAAQYFGIK----------------------------LVRTPL 221 (514)
T ss_dssp HHHHHC-------------CSSCEEEEETTSCTHH-HHHHHHHTCE----------------------------EEEECB
T ss_pred hhhhcC-------------CCCCeEEEeCccchHH-HHHHHHcCCe----------------------------eEEeee
Confidence 322 11 2345788877777762 2222222211 111221
Q ss_pred cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHH
Q 005009 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (719)
Q Consensus 565 P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~ 644 (719)
...++ -| .+.|++.+. .++++|+++.. +...|.+.+ ++
T Consensus 222 ~~~~~-----------~d------------------~~~Le~~i~--------~~~~~v~~~~~-~nptG~~~~----l~ 259 (514)
T 3mad_A 222 DADYR-----------AD------------------VAAMREAIT--------PNTVVVAGSAP-GYPHGVVDP----IP 259 (514)
T ss_dssp CTTSC-----------BC------------------HHHHHHHCC--------TTEEEEEEETT-CTTTCCCCC----HH
T ss_pred CCCCC-----------CC------------------HHHHHHHhc--------cCCEEEEEeCC-CCCCccccC----HH
Confidence 11110 01 356777664 36789999997 888899877 89
Q ss_pred HHHHHHHhcCCcEEEeccccCc-----cccCc---cccccccCCCcceeeehhccCCCccchheeEeCHHHHhh
Q 005009 645 ILVKECQNRKIPVIFDEVFTGF-----WRLGV---ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 645 ~Lr~Lc~k~gilLI~DEVqTGf-----GRtG~---~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~ 710 (719)
+|.++|++||++||+||+++|| +++|. .+.+...|+...+.++.|.+.+| .++|+++++++....
T Consensus 260 ~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~ 332 (514)
T 3mad_A 260 EIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGA-KGTSVILYRRPDLLH 332 (514)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCC-SSCEEEEESSHHHHT
T ss_pred HHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCC-CCeEEEEEeCHHHhc
Confidence 9999999999999999999986 66776 56666677644444567998888 689999998876643
No 123
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.31 E-value=5.1e-12 Score=139.07 Aligned_cols=172 Identities=11% Similarity=0.066 Sum_probs=114.8
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|+++.+. +.+++++||++|++++++++ +. ..+||+....|||
T Consensus 63 r~~~p~~~~l~~~la~l~g~---~~~~~~~sG~~Ai~~~~~l~------~~----------------gd~Vi~~~~~y~~ 117 (400)
T 3nmy_A 63 RTHNPTRFAYERCVAALEGG---TRAFAFASGMAATSTVMELL------DA----------------GSHVVAMDDLYGG 117 (400)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTS------CT----------------TCEEEEESSCCHH
T ss_pred cCCCHHHHHHHHHHHHHhCC---CCEEEecCHHHHHHHHHHHc------CC----------------CCEEEEeCCCchH
Confidence 35678889999999998873 58999999999999865443 11 2378888888887
Q ss_pred Cccccccc-cCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHH
Q 005009 519 DTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (719)
Q Consensus 519 ~t~galsl-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~ 597 (719)
.......+ ... . |.....+| ++|
T Consensus 118 ~~~~~~~~~~~~--------------~-------------g~~~~~v~--------------~~d--------------- 141 (400)
T 3nmy_A 118 TFRLFERVRRRT--------------A-------------GLDFSFVD--------------LTD--------------- 141 (400)
T ss_dssp HHHHHHHTHHHH--------------H-------------CCEEEEEC--------------TTS---------------
T ss_pred HHHHHHHhhHhh--------------c-------------CeEEEEEC--------------CCC---------------
Confidence 43322111 000 0 00000111 122
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 598 ~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
.+.+++.+. .++++|++|++ ++..|.+.+ +++|+++|++||++||+||+++. |.++....
T Consensus 142 ---~~~l~~~i~--------~~~~~v~~e~~-~np~G~~~~----l~~i~~la~~~g~~livDe~~~~----~~~~~~~~ 201 (400)
T 3nmy_A 142 ---PAAFKAAIR--------ADTKMVWIETP-TNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS----PMLQRPLS 201 (400)
T ss_dssp ---HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH----HHHCCGGG
T ss_pred ---HHHHHHHhc--------cCCCEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc----cccCChhh
Confidence 255666664 36899999997 999999886 99999999999999999999952 22222223
Q ss_pred cCCCcceeeehhccCCCccchhe--eE-eCHHHHhhh
Q 005009 678 LGCVPDIACYGKLLTGGVIPLAA--TL-ATNAVFDSF 711 (719)
Q Consensus 678 ~gv~PDIvtlgK~LggG~~Plsa--vl-~~~~i~~~~ 711 (719)
+|+.+.+.+++|.++|+..++++ ++ .++++++.+
T Consensus 202 ~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l 238 (400)
T 3nmy_A 202 LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQM 238 (400)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHH
T ss_pred cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHH
Confidence 45444445699999976567766 33 366676654
No 124
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.30 E-value=6.4e-12 Score=137.97 Aligned_cols=220 Identities=10% Similarity=0.034 Sum_probs=138.0
Q ss_pred eeeeccccccccCCCCCCCHHH--HHHHHHhhhhcccccCCCCCCh-HHHHHHHHHHhcc-----CCCCCCe---EEEeC
Q 005009 400 QQFDACASWWTQGPDATLQIEL--ARDMGYTAARFGHVMFPENVYE-PALECAELLLQGV-----GKGWASR---AYFSD 468 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V--~~Av~~q~~~~~~~~~~~~~~~-~~~~Lae~L~~~~-----~~~~~~r---v~f~~ 468 (719)
.++||.+|... .+|+ +|.+ .+++.++++...... +... -..+|.+.|++++ +-. .+. +++++
T Consensus 48 ~~i~l~~g~~~-~~~~--~~~~~~~~a~~~~~~~~~~~~---y~~~~g~~~lr~~ia~~~~~~~~~~~-~~~~~~i~~t~ 120 (430)
T 2x5f_A 48 TTYNATIGMAT-NKDG--KMFASSLDAMFNDLTPDEIFP---YAPPQGIEELRDLWQQKMLRDNPELS-IDNMSRPIVTN 120 (430)
T ss_dssp CSEECCCSSCE-ETTE--ECCCHHHHTTBSSCCGGGTSS---CCCTTCCHHHHHHHHHHHHHHCTTCC-GGGBCCCEEES
T ss_pred CcEEeeeeecc-CCCC--chhhHHHHHHHHhcCcccccc---cCCCCCCHHHHHHHHHHHhccCcccC-CCccceEEEcC
Confidence 78999887654 5774 5667 888887775411111 1111 1234555555544 322 256 99999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCccc
Q 005009 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (719)
Q Consensus 469 SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (719)
+|++|++.+++... .. ..+|+....+||+....+....|..
T Consensus 121 g~~~al~~~~~~l~-----~~----------------gd~Vl~~~p~y~~~~~~~~~~~g~~------------------ 161 (430)
T 2x5f_A 121 ALTHGLSLVGDLFV-----NQ----------------DDTILLPEHNWGNYKLVFNTRNGAN------------------ 161 (430)
T ss_dssp HHHHHHHHHHHHHC-----CT----------------TCEEEEESSCCTHHHHHHTTTTCCE------------------
T ss_pred CchHHHHHHHHHHh-----CC----------------CCEEEEcCCcCccHHHHHHHhcCCe------------------
Confidence 99999999999771 11 2479999999998643322201110
Q ss_pred CCCcccccCcceeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 005009 549 DPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (719)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP 627 (719)
...++... .+ ..| .+.+++.+.+ .+....+.+|..|
T Consensus 162 ----------~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~----~~~~~~~v~i~~p 198 (430)
T 2x5f_A 162 ----------LQTYPIFDKDG-----------HYT------------------TDSLVEALQS----YNKDKVIMILNYP 198 (430)
T ss_dssp ----------EEEECCBCTTS-----------CBC------------------SHHHHHHHHH----CCSSEEEEEECSS
T ss_pred ----------EEEEeccCccC-----------CcC------------------HHHHHHHHHh----cCCCCEEEEEcCC
Confidence 00111110 00 001 2456667763 1123344556667
Q ss_pred ccccCCccccCCHHHHHHHHHHHHh-----cCCcEEEeccccCccccCccc-cc--cccCCCcc------eeeehhccC-
Q 005009 628 VVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVET-TA--DLLGCVPD------IACYGKLLT- 692 (719)
Q Consensus 628 Viqg~gG~~~pp~~fl~~Lr~Lc~k-----~gilLI~DEVqTGfGRtG~~~-a~--e~~gv~PD------IvtlgK~Lg- 692 (719)
+...|.+ .|.+++++|.++|++ ||+++|+||++++|.+.|..+ .. ...+..++ +.+++|.+|
T Consensus 199 --~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 275 (430)
T 2x5f_A 199 --NNPTGYT-PTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFA 275 (430)
T ss_dssp --CTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTC
T ss_pred --CCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCC
Confidence 6667764 588999999999999 999999999999998877632 22 22233454 347899998
Q ss_pred CCccchheeEe---CHHHHhhhc
Q 005009 693 GGVIPLAATLA---TNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~---~~~i~~~~~ 712 (719)
.| +++|++++ ++++++.+.
T Consensus 276 ~G-~riG~~~~~~~~~~~~~~l~ 297 (430)
T 2x5f_A 276 WG-FRVGFMTFGTSDQTTKEVLE 297 (430)
T ss_dssp GG-GCCEEEEEBCCCHHHHHHHH
T ss_pred CC-CCeEEEEEecCCHHHHHHHH
Confidence 78 79999999 999888764
No 125
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.29 E-value=4.7e-12 Score=135.47 Aligned_cols=192 Identities=12% Similarity=0.085 Sum_probs=130.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCC--CeEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA--SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~--~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~ 495 (719)
+|++.+|+.+++..... ....+...++.++|++..+.. . +.++|+++|++|++ +++.++
T Consensus 14 ~~~v~~a~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~-~~~~~v~~~~g~t~al~-~~~~~~------------- 74 (384)
T 3zrp_A 14 KEDVLVAGLENNVGFTS----KEFVEALAYSLKGLRYVMGAS-KNYQPLIIPGGGTSAME-SVTSLL------------- 74 (384)
T ss_dssp CHHHHHHTTCCSCCTTS----HHHHHHHHHHHHHHHHHHTCC-TTSEEEEEESCHHHHHH-HGGGGC-------------
T ss_pred CHHHHHHhhcccccccc----HHHHHHHHHHHHHHHHHhCCC-CCCcEEEEcCCcHHHHH-HHHhhc-------------
Confidence 79999998887643211 112455678888888887643 3 57999999999999 887551
Q ss_pred cCCCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccc
Q 005009 496 LGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (719)
Q Consensus 496 ~~~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (719)
....+||..+.+|||.....+. ..|.. ...++.+...
T Consensus 75 --------~~gd~vi~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------ 112 (384)
T 3zrp_A 75 --------KPNDKILVVSNGVFGDRWEQIFKRYPVN----------------------------VKVLRPSPGD------ 112 (384)
T ss_dssp --------CTTCEEEEECSSHHHHHHHHHHTTSSCE----------------------------EEEECCSTTC------
T ss_pred --------CCCCEEEEecCCcchHHHHHHHHHcCCc----------------------------EEEecCCCCC------
Confidence 1134799999999995433221 11100 0111211100
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
..| .+.+++.+.+ .++.+|++++. +...|.+.+ +++|.++|++||
T Consensus 113 -----~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~ 157 (384)
T 3zrp_A 113 -----YVK------------------PGEVEEEVRK-------SEYKLVALTHV-ETSTGVREP----VKDVINKIRKYV 157 (384)
T ss_dssp -----CCC------------------HHHHHHHHHH-------SCEEEEEEESE-ETTTTEECC----HHHHHHHHGGGE
T ss_pred -----CCC------------------HHHHHHHHHh-------CCCcEEEEeCC-CCCCceECc----HHHHHHHHHhcC
Confidence 001 3567777763 25889999997 999998887 999999999999
Q ss_pred CcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhh
Q 005009 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 655 ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~ 711 (719)
+++|+||+|+ +|.. .+.... ..+|+++++ |.++|+ .++|++++++++++.+
T Consensus 158 ~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~ 210 (384)
T 3zrp_A 158 ELIVVDGVSS-VGAE--EVKAEE--WNVDVYLTASQKALGSA-AGLGLLLLSPKALSIL 210 (384)
T ss_dssp EEEEEECTTT-TTTS--CCCTTT--TTCSEEEEETTSTTCCC-SSEEEEEECHHHHHHH
T ss_pred CEEEEECccc-ccCc--cccccc--cCCCEEEecCcccccCC-CceEEEEECHHHHHHh
Confidence 9999999996 3221 122222 247888665 999887 5799999999998776
No 126
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.28 E-value=3.2e-11 Score=131.49 Aligned_cols=217 Identities=12% Similarity=0.021 Sum_probs=132.6
Q ss_pred eeeecccccccc-CCCCCCCHHHHHHHHHhhhhcccccCC--CCCChHHHHHHHHHHhc------cC--CCCCCeEEEeC
Q 005009 400 QQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHVMFP--ENVYEPALECAELLLQG------VG--KGWASRAYFSD 468 (719)
Q Consensus 400 ~yLD~~sg~~~~-~lGH~~hP~V~~Av~~q~~~~~~~~~~--~~~~~~~~~Lae~L~~~------~~--~~~~~rv~f~~ 468 (719)
.+|||.+|.... .-.+. +|++.+|+.++++........ ....+....+++.+.+. .+ -. .+++++++
T Consensus 34 ~~i~l~~g~p~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-~~~v~~~~ 111 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLT-SAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-KDNVVLCS 111 (416)
T ss_dssp CCEECCCCCTTTTSCSCC-CHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-GGGEEEES
T ss_pred CeEEecCcCCCcccCCCC-CHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-cceEEEeC
Confidence 678888776543 12356 899999999998763211111 11223344455555411 00 11 36899999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCccc
Q 005009 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (719)
Q Consensus 469 SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (719)
+|++|++.+++... .. ..+|+....+|||....+ ...|..
T Consensus 112 g~~~al~~~~~~l~-----~~----------------gd~vl~~~p~y~~~~~~~-~~~g~~------------------ 151 (416)
T 1bw0_A 112 GGSHGILMAITAIC-----DA----------------GDYALVPQPGFPHYETVC-KAYGIG------------------ 151 (416)
T ss_dssp HHHHHHHHHHHHHC-----CT----------------TCEEEEEESCCTHHHHHH-HHTTCE------------------
T ss_pred ChHHHHHHHHHHhC-----CC----------------CCEEEEcCCCcHhHHHHH-HHcCcE------------------
Confidence 99999999999871 11 247999999999854322 222110
Q ss_pred CCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 005009 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (719)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPV 628 (719)
...++..... .|. -| .+.+++.+. ....+.++++|
T Consensus 152 ----------~~~v~~~~~~----------~~~---------~d--------~~~l~~~l~-------~~~~~v~i~~p- 186 (416)
T 1bw0_A 152 ----------MHFYNCRPEN----------DWE---------AD--------LDEIRRLKD-------DKTKLLIVTNP- 186 (416)
T ss_dssp ----------EEEEEEEGGG----------TTE---------EC--------HHHHHHHCC-------TTEEEEEEESS-
T ss_pred ----------EEEeecCccc----------CCC---------CC--------HHHHHHHhc-------cCCeEEEEeCC-
Confidence 0011110000 000 01 245666664 22345666777
Q ss_pred cccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-----cccccccCCCcc-e--eeehhccC-CCccchh
Q 005009 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-----ETTADLLGCVPD-I--ACYGKLLT-GGVIPLA 699 (719)
Q Consensus 629 iqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-----~~a~e~~gv~PD-I--vtlgK~Lg-gG~~Pls 699 (719)
+...|.+ .|++++++|.++|++||+++|+||++++|.+.|. +.....++..++ + .+++|.++ .| +++|
T Consensus 187 -~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr~G 263 (416)
T 1bw0_A 187 -SNPCGSN-FSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG-WRLG 263 (416)
T ss_dssp -CTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCE
T ss_pred -CCCCCcc-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCC-ceEE
Confidence 5666765 5789999999999999999999999999877775 222222222222 3 37899975 57 7999
Q ss_pred eeEeCHH
Q 005009 700 ATLATNA 706 (719)
Q Consensus 700 avl~~~~ 706 (719)
+++++++
T Consensus 264 ~~~~~~~ 270 (416)
T 1bw0_A 264 WLLYVDP 270 (416)
T ss_dssp EEEEECT
T ss_pred EEEeeCc
Confidence 9998763
No 127
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.28 E-value=2.8e-11 Score=132.89 Aligned_cols=189 Identities=15% Similarity=0.051 Sum_probs=127.1
Q ss_pred cCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccc
Q 005009 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
..++|. +|+.++++.. ....+.. ....++...++.++|+++.+. +.++|++||++|++.|++.+. +.
T Consensus 28 ~~~~~~-~~~~~~~~~~--~~~~~~y-~~~~~~~~~~l~~~la~~~g~---~~~~~~~~gt~a~~~al~~l~-----~~- 94 (412)
T 2cb1_A 28 AAYGFK-TLEEGQERFA--TGEGYVY-ARQKDPTAKALEERLKALEGA---LEAVVLASGQAATFAALLALL-----RP- 94 (412)
T ss_dssp SBCCCS-SHHHHHHHHH--HCCSCSB-TTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTC-----CT-
T ss_pred ceeecC-ChHHHHHHhc--cccCcCc-CCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CC-
Confidence 367888 8877766554 2222321 223567889999999999873 589999999999999999761 11
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhh
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (719)
..+||+....||+.......+... . |.....+|
T Consensus 95 ---------------gd~vi~~~~~~~~~~~~~~~~~~~---~------------------------g~~~~~~~----- 127 (412)
T 2cb1_A 95 ---------------GDEVVAAKGLFGQTIGLFGQVLSL---M------------------------GVTVRYVD----- 127 (412)
T ss_dssp ---------------TCEEEEETTCCHHHHHHHHHTTTT---T------------------------TCEEEEEC-----
T ss_pred ---------------CCEEEEeCCCchhHHHHHHHHHHH---c------------------------CCEEEEEC-----
Confidence 247888888887632211110000 0 00000111
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
. + .+.+++.+. .++.+|++|++ ++..|.+.+ +++|.++|
T Consensus 128 ------------~--------~--------~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~l~ 166 (412)
T 2cb1_A 128 ------------P--------E--------PEAVREALS--------AKTRAVFVETV-ANPALLVPD----LEALATLA 166 (412)
T ss_dssp ------------S--------S--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHH
T ss_pred ------------C--------C--------HHHHHHHhc--------cCCeEEEEeCC-CCCCccccc----HHHHHHHH
Confidence 0 0 245666664 26789999997 898998886 99999999
Q ss_pred HhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCH
Q 005009 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATN 705 (719)
Q Consensus 651 ~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~ 705 (719)
++||+++|+||+|++++... ...+..+|+++ ++|.++++..++|++++.+
T Consensus 167 ~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~ 218 (412)
T 2cb1_A 167 EEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHGSVLGGAVLSR 218 (412)
T ss_dssp HHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred HHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCCCcEEEEEEec
Confidence 99999999999998663222 22234689986 9999987436888887655
No 128
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.27 E-value=2.1e-11 Score=132.91 Aligned_cols=193 Identities=12% Similarity=0.021 Sum_probs=130.6
Q ss_pred cCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccc
Q 005009 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
..+.+. +++...++..+. ...+. ...+.++...+|.++|+++.+. +.+++++||++|++.+++.+. +.
T Consensus 30 ~~~~~~-~~~~~~~~~~~~-~~~~~-y~~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~~~~-----~~- 97 (389)
T 3acz_A 30 STFCFD-STQQGADLFMGK-GEGHI-YSRLGNPTVEQFEEMVCSIEGA---AGSAAFGSGMGAISSSTLAFL-----QK- 97 (389)
T ss_dssp SBBCCS-SHHHHHHHHTTC-SSCCC-BTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTTC-----CT-
T ss_pred CceecC-ChHHHHHhhcCC-CCCcc-cCCCCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHh-----CC-
Confidence 356677 665555443332 11222 2234578889999999999874 578889999999999998761 11
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCcccc---ccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ga---lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (719)
..+||+.+..|||..... +...|. ....+|
T Consensus 98 ---------------gd~vl~~~~~y~~~~~~~~~~~~~~g~------------------------------~~~~v~-- 130 (389)
T 3acz_A 98 ---------------GDHLIAGDTLYGCTVSLFTHWLPRFGI------------------------------EVDLID-- 130 (389)
T ss_dssp ---------------TCEEEEESSCCHHHHHHHHHHHHHTTC------------------------------EEEEEC--
T ss_pred ---------------CCEEEEeCCCchHHHHHHHHHHHHcCC------------------------------EEEEEC--
Confidence 247999999998843221 111110 000111
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
..| .+.+++.+. .++++|++|+. ++..|.+.+ +++|.
T Consensus 131 ------------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~ 167 (389)
T 3acz_A 131 ------------TSD------------------VEKVKAAWK--------PNTKMVYLESP-ANPTCKVSD----IKGIA 167 (389)
T ss_dssp ------------TTC------------------HHHHHHTCC--------TTEEEEEEESS-CTTTCCCCC----HHHHH
T ss_pred ------------CCC------------------HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHH
Confidence 111 244555553 36789999997 898998886 99999
Q ss_pred HHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccch-heeEeCH-HHHhhh
Q 005009 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSF 711 (719)
Q Consensus 648 ~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Pl-savl~~~-~i~~~~ 711 (719)
++|++||+++|+||+++++ ..+.. ++..+|++ +++|.++|+..++ |++++++ ++++.+
T Consensus 168 ~~~~~~~~~livD~~~~~~-~~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l 229 (389)
T 3acz_A 168 VVCHERGARLVVDATFTSP-CFLKP-----LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATI 229 (389)
T ss_dssp HHHHHHTCEEEEECTTTCT-TTCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccc-cccCc-----cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHH
Confidence 9999999999999999854 22222 23468998 6899999755787 8899998 887655
No 129
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.27 E-value=6.7e-11 Score=129.70 Aligned_cols=224 Identities=11% Similarity=0.014 Sum_probs=141.9
Q ss_pred eeeeccccccccCCCCCCC--HHHHHHHHHhhhhcc-ccc-CCCCCChHHHHHHHHHHhccCCC-CCC--eEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQ--IELARDMGYTAARFG-HVM-FPENVYEPALECAELLLQGVGKG-WAS--RAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~h--P~V~~Av~~q~~~~~-~~~-~~~~~~~~~~~Lae~L~~~~~~~-~~~--rv~f~~SGsE 472 (719)
.+||+..|++..+-|+. + |.|.+|+.++++... +.. ......+....+++.+....+.. .-+ .++++++|++
T Consensus 50 ~~i~l~~G~y~d~~~~~-~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGKI-PLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SCEECCCCSCCCTTSCC-CCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCc-cCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 68999999877788887 6 899999999887622 111 11122344555555554422100 024 7999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.++++. .... . ..+|+..+.+|++....... .|..
T Consensus 129 al~~~~~~~-~~~~--~----------------gd~Vlv~~p~~~~~~~~~~~-~g~~---------------------- 166 (420)
T 4f4e_A 129 ALKIGADFL-RTLN--P----------------KAKVAISDPSWENHRALFDM-AGFE---------------------- 166 (420)
T ss_dssp HHHHHHHHH-HHHC--T----------------TCCEEEEESCCHHHHHHHHH-TTCC----------------------
T ss_pred HHHHHHHHH-HHhC--C----------------CCEEEEeCCCcHhHHHHHHH-cCCe----------------------
Confidence 999999876 2221 1 23789999999885433222 1110
Q ss_pred ccccCcceeecC--cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 553 VFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 553 ~~~~~~~~~~~~--P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++. ++.+ .-| .+.+++.+.+ .+.+..++++... +
T Consensus 167 ------~~~v~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~v~i~~p-~ 205 (420)
T 4f4e_A 167 ------VVAYPYYDAKTN---------------------GVN--------FDGMLAALNG-----YEPGTIVVLHACC-H 205 (420)
T ss_dssp ------EEEEECEETTTT---------------------EEC--------HHHHHHHHTT-----CCTTCEEEEECSS-C
T ss_pred ------EEEeeeeccccC---------------------ccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-C
Confidence 011111 0000 001 3567777763 2346678888776 7
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--ccccccc-CCCccee---eehhccC-CCccchheeEe
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLL-GCVPDIA---CYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~-gv~PDIv---tlgK~Lg-gG~~Plsavl~ 703 (719)
...|.+. +.+.+++|.++|++||+++|+||++.+|+..|. ......+ +..++++ +++|.+| .| +++|++++
T Consensus 206 NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~ 283 (420)
T 4f4e_A 206 NPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYG-ERVGALSI 283 (420)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCEEEEEE
T ss_pred CCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcC-CCcEEEEE
Confidence 8888755 788899999999999999999999999977652 2222222 2233332 6899999 68 69998753
Q ss_pred ---CHHHHh
Q 005009 704 ---TNAVFD 709 (719)
Q Consensus 704 ---~~~i~~ 709 (719)
++++++
T Consensus 284 ~~~~~~~~~ 292 (420)
T 4f4e_A 284 ITDSKDEAA 292 (420)
T ss_dssp ECSSHHHHH
T ss_pred EcCCHHHHH
Confidence 555543
No 130
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.26 E-value=5e-11 Score=126.86 Aligned_cols=213 Identities=8% Similarity=-0.029 Sum_probs=130.5
Q ss_pred eEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEE
Q 005009 387 FSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF 466 (719)
Q Consensus 387 ~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f 466 (719)
.+++|.+|+ ++|||.++. ..++ . +|++.+|+.+++...... ......+|.++|++..+-. .+.++|
T Consensus 7 ~~~~~~~g~----~~id~~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y-----~~~~~~~lr~~la~~~~~~-~~~i~~ 72 (350)
T 3fkd_A 7 DEGITPLSS----EIVNFSTTV--WTDG-D-KDHLEKHLVENLNCIRHY-----PEPDAGTLRQMLAKRNSVD-NNAILV 72 (350)
T ss_dssp -------------CCEECSCCS--CCCS-C-CHHHHHHHHHTGGGGGSC-----CCTTCHHHHHHHHHHTTCC-GGGEEE
T ss_pred chHhhhccc----cEEEccCCC--CCCC-C-CHHHHHHHHHhHhHHhcC-----CCCcHHHHHHHHHHHhCcC-HHHEEE
Confidence 368999999 999999865 3455 5 899999999988543221 2222257888888877632 368999
Q ss_pred eCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCc
Q 005009 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546 (719)
Q Consensus 467 ~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~ 546 (719)
+++|++|++.+++.. . | .+||....+|++....+.. .|.
T Consensus 73 t~g~~~al~~~~~~l-~------g----------------d~Vi~~~p~~~~~~~~~~~-~g~----------------- 111 (350)
T 3fkd_A 73 TNGPTAAFYQIAQAF-R------G----------------SRSLIAIPSFAEYEDACRM-YEH----------------- 111 (350)
T ss_dssp ESHHHHHHHHHHHHT-T------T----------------CEEEEEESCCHHHHHHHHH-TTC-----------------
T ss_pred cCCHHHHHHHHHHHH-C------C----------------CEEEEeCCCcHHHHHHHHH-cCC-----------------
Confidence 999999999999987 2 2 3789999999885432221 111
Q ss_pred ccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc
Q 005009 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626 (719)
Q Consensus 547 ~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE 626 (719)
..+.+| ..+.++ . +. ..++.+|+++
T Consensus 112 -------------~~~~v~--------------~~~~~~---------~------------~~-------~~~~~~v~i~ 136 (350)
T 3fkd_A 112 -------------EVCFYP--------------SNEDIG---------E------------AD-------FSNMDFCWLC 136 (350)
T ss_dssp -------------EEEEEE--------------TTSCGG---------G------------SC-------CTTCSEEEEE
T ss_pred -------------eEEEEe--------------cCCccc---------c------------Cc-------cCCCCEEEEe
Confidence 001111 000000 0 00 1234455565
Q ss_pred cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc--ccccCCCcceeeehhccC-CCccchheeEe
Q 005009 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPDIACYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 627 PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a--~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~ 703 (719)
.. +...|.+.+ .+.+++|.++|++ .++|+||++++|+..|.... .+.++....+.+++|.+| .| +.+|++++
T Consensus 137 ~p-~nptG~~~~-~~~l~~l~~~~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~ 211 (350)
T 3fkd_A 137 NP-NNPDGRLLQ-RTEILRLLNDHPD--TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPG-LRIGYIVA 211 (350)
T ss_dssp SS-CTTTCCCCC-HHHHHHHHHHCTT--SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGG-GCCEEEEC
T ss_pred CC-CCCcCCCCC-HHHHHHHHHhCCC--CEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcc-hheEeEEe
Confidence 54 777788776 3334444444444 49999999999988776432 222222334447999998 78 79999999
Q ss_pred CHHHHhhhcCC
Q 005009 704 TNAVFDSFVGD 714 (719)
Q Consensus 704 ~~~i~~~~~~~ 714 (719)
++++.+.+...
T Consensus 212 ~~~~~~~~~~~ 222 (350)
T 3fkd_A 212 NKDFMKRVAAF 222 (350)
T ss_dssp CHHHHHHHHTT
T ss_pred CHHHHHHHHHh
Confidence 99999887653
No 131
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.26 E-value=6.1e-11 Score=126.74 Aligned_cols=204 Identities=12% Similarity=0.026 Sum_probs=134.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhc-ccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~-~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||+.+ .|+. +|+|.+|+.++++.. ..... .+ ..+...++.+.|++.++.. .+.++|+++|++|
T Consensus 3 ~yld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a 73 (384)
T 1eg5_A 3 VYFDNNA------TTRV-DDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATES 73 (384)
T ss_dssp EECBTTT------CCCC-CHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHHH
T ss_pred EEEecCc------cCCC-CHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEECCHHHH
Confidence 5788665 3688 999999999998762 11100 00 1234578889999888743 3589999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccc--cccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM--EAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gal--slt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
++.+++.+ ..+.... ..+|+....+||+...... ...|..
T Consensus 74 ~~~~~~~~-~~~~~~~----------------gd~vl~~~~~~~~~~~~~~~~~~~g~~--------------------- 115 (384)
T 1eg5_A 74 INWILKTV-AETFEKR----------------KRTIITTPIEHKAVLETMKYLSMKGFK--------------------- 115 (384)
T ss_dssp HHHHHHHH-HHHTTTT----------------CCEEEECTTSCHHHHHHHHHHHHTTCE---------------------
T ss_pred HHHHHHhh-hhhccCC----------------CCEEEECCCCchHHHHHHHHHHhcCCE---------------------
Confidence 99999988 3221111 2478899999988543332 111110
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
...++....+ ..| .+.+++.+. .++.+|++++. +.
T Consensus 116 -------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~n 150 (384)
T 1eg5_A 116 -------VKYVPVDSRG-----------VVK------------------LEELEKLVD--------EDTFLVSIMAA-NN 150 (384)
T ss_dssp -------EEECCBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEEEESB-CT
T ss_pred -------EEEEccCCCC-----------ccC------------------HHHHHHHhC--------CCCeEEEEECC-CC
Confidence 0011111000 011 245666663 26788999987 88
Q ss_pred CCccccCCHHHHHHHHHHHHhcC--CcEEEeccccCccccCccccccccCCCcceeeeh--hccCC-CccchheeEeCHH
Q 005009 632 AGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-GVIPLAATLATNA 706 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~g--ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~Lgg-G~~Plsavl~~~~ 706 (719)
..|.+.+ +++|.++|++|| +++|+||+++ ||... +..+. ..+|+++++ |.+|- | +|+++++++
T Consensus 151 ptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~sK~~g~~G---~G~~~~~~~ 218 (384)
T 1eg5_A 151 EVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLEK--LEVDYASFSAHKFHGPKG---VGITYIRKG 218 (384)
T ss_dssp TTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCTT--TCCSEEEEEGGGGTSCTT---CEEEEECTT
T ss_pred CcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCchh--cCCCEEEecHHHhcCCCc---eEEEEEcCC
Confidence 8898887 899999999999 9999999996 76532 22222 358999877 97553 3 688999987
Q ss_pred H
Q 005009 707 V 707 (719)
Q Consensus 707 i 707 (719)
+
T Consensus 219 ~ 219 (384)
T 1eg5_A 219 V 219 (384)
T ss_dssp S
T ss_pred C
Confidence 6
No 132
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.25 E-value=4.6e-11 Score=129.53 Aligned_cols=169 Identities=12% Similarity=0.066 Sum_probs=116.3
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +..++++||+||++.|++.+. +. ..+|+.....||+.
T Consensus 49 ~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~~~~~~~-----~~----------------g~~vl~~~~~~~~~ 104 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL-----KP----------------GDLLVAPHDCYGGS 104 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEecCCcHhH
Confidence 4567788999999999874 356667999999999999771 11 24789999999873
Q ss_pred cccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 520 TLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 520 t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
...+. +... .+ .....+| .+|
T Consensus 105 -~~~~~~~~~~---~g------------------------~~~~~~~--------------~~d---------------- 126 (386)
T 1cs1_A 105 -YRLFDSLAKR---GC------------------------YRVLFVD--------------QGD---------------- 126 (386)
T ss_dssp -HHHHHHHHTT---TS------------------------CEEEEEC--------------TTC----------------
T ss_pred -HHHHHHHHHh---cC------------------------CEEEEeC--------------CCC----------------
Confidence 22211 1000 00 0001111 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+.+ ++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+|+++... ..+ .+
T Consensus 127 --~~~l~~~i~~--------~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~-~~~---~~ 187 (386)
T 1cs1_A 127 --EQALRAALAE--------KPKLVLVESP-SNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ-NPL---AL 187 (386)
T ss_dssp --HHHHHHHHHT--------CCSEEEEECS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC-CGG---GG
T ss_pred --HHHHHHhhcc--------CCcEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc---cc
Confidence 2556777752 5679999997 999999886 999999999999999999999977543 211 23
Q ss_pred CCCccee--eehhccCCCccch-heeEeCH-HHHhhh
Q 005009 679 GCVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSF 711 (719)
Q Consensus 679 gv~PDIv--tlgK~LggG~~Pl-savl~~~-~i~~~~ 711 (719)
.+|++ +++|.++++..++ |++++++ ++++.+
T Consensus 188 --~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l 222 (386)
T 1cs1_A 188 --GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTEL 222 (386)
T ss_dssp --TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHH
T ss_pred --CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHH
Confidence 45665 7999998764555 8888886 777665
No 133
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.25 E-value=1.1e-10 Score=126.06 Aligned_cols=224 Identities=10% Similarity=0.043 Sum_probs=138.0
Q ss_pred eeeeccccccccCCCCCCC--HHHHHHHHH-hhhhcccccC-C-CCCChHHHHHHHHHHhccCCC-CCC--eEEEeCChH
Q 005009 400 QQFDACASWWTQGPDATLQ--IELARDMGY-TAARFGHVMF-P-ENVYEPALECAELLLQGVGKG-WAS--RAYFSDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~h--P~V~~Av~~-q~~~~~~~~~-~-~~~~~~~~~Lae~L~~~~~~~-~~~--rv~f~~SGs 471 (719)
.+||+..|++..+-|+. + |+|.+|+.+ +++....... . ....+...++++.+....+.. .-+ .++++++|+
T Consensus 27 ~~i~l~~g~y~d~~~~~-~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGII-PQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp CCEECSSCCCCCTTSCC-CCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CeEEEeeeEEECCCCCc-cCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 68899988766677777 6 999999999 8775322111 1 122334445555554322100 025 799999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+|++.++++. .... . ..+|+....+|++....... .|..
T Consensus 106 ~a~~~~~~~~-~~~~--~----------------gd~vl~~~p~~~~~~~~~~~-~g~~--------------------- 144 (397)
T 3fsl_A 106 GALKVGADFL-KRYF--P----------------ESGVWVSDPTWENHVAIFAG-AGFE--------------------- 144 (397)
T ss_dssp HHHHHHHHHH-HHHC--T----------------TCCEEEESSCCHHHHHHHHH-TTCC---------------------
T ss_pred HHHHHHHHHH-HhcC--C----------------CCeEEEeCCCchhHHHHHHH-cCCc---------------------
Confidence 9999999876 2221 1 23788999999885433222 1110
Q ss_pred cccccCcceeecC--cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 005009 552 TVFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (719)
Q Consensus 552 ~~~~~~~~~~~~~--P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPVi 629 (719)
...++. ++.+ .-| .+.+++.+.+ ...+..++++...
T Consensus 145 -------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~v~~~~p- 182 (397)
T 3fsl_A 145 -------VSTYPWYDEATN---------------------GVR--------FNDLLATLKT-----LQAGSIVLLHPCC- 182 (397)
T ss_dssp -------EEEECCEETTTT---------------------EEC--------HHHHHHHHTT-----CCTTCEEEECSSS-
T ss_pred -------eEEEeeeeccCC---------------------cCc--------HHHHHHHHHh-----CCCCCEEEEeCCC-
Confidence 011111 0000 001 3567777763 2345667777664
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC--cccccccc-CCC---cceeeehhccC-CCccchheeE
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLL-GCV---PDIACYGKLLT-GGVIPLAATL 702 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG--~~~a~e~~-gv~---PDIvtlgK~Lg-gG~~Plsavl 702 (719)
+...|.+. +.+.+++|.++|++||+++|+||++++|...+ .......+ +.. ..+.+++|.+| .| +++|+++
T Consensus 183 ~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~riG~~~ 260 (397)
T 3fsl_A 183 HNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG-ERVGGLS 260 (397)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCCEEEE
T ss_pred CCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcC-CCeeEEE
Confidence 77778654 67789999999999999999999999886653 22222222 222 22347899999 78 6999987
Q ss_pred e---CHHHHh
Q 005009 703 A---TNAVFD 709 (719)
Q Consensus 703 ~---~~~i~~ 709 (719)
+ .+++++
T Consensus 261 ~~~~~~~~~~ 270 (397)
T 3fsl_A 261 VMCEDAEAAG 270 (397)
T ss_dssp EECSSHHHHH
T ss_pred EecCCHHHHH
Confidence 4 455544
No 134
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.24 E-value=1.1e-11 Score=134.14 Aligned_cols=196 Identities=13% Similarity=-0.006 Sum_probs=130.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|+|.+|+.+++.. +.. ....+...++.++|++..+...-+.++|++||++|++.|++.+.
T Consensus 25 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------------- 85 (411)
T 3nnk_A 25 DPRVLRAMSSQLIG--QYD--PAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------------- 85 (411)
T ss_dssp CHHHHHHHTSCCCC--TTC--HHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC---------------
T ss_pred CHHHHHHhhccccc--ccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc---------------
Confidence 79999998876521 111 01124567888888888765422348899999999999999872
Q ss_pred CCccccCcceEEEEEeCCcccCcccc-ccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~ga-lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
....+||+...+|||..... +...|.. ...++.+..+
T Consensus 86 ------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 123 (411)
T 3nnk_A 86 ------RPGDKVLVPVFGRFGHLLCEIARRCRAE----------------------------VHTIEVPWGE-------- 123 (411)
T ss_dssp ------CTTCEEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred ------CCCCEEEEecCCchHHHHHHHHHHcCCe----------------------------EEEEecCCCC--------
Confidence 12348999999999853221 1111100 0112211110
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+.+ .++.+|++++. ++..|.+.+ +++|.++|++||++
T Consensus 124 ---~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 170 (411)
T 3nnk_A 124 ---VFT------------------PDQVEDAVKR-------IRPRLLLTVQG-DTSTTMLQP----LAELGEICRRYDAL 170 (411)
T ss_dssp ---CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHHTCE
T ss_pred ---CCC------------------HHHHHHHHhh-------CCCeEEEEeCC-CCCcceecc----HHHHHHHHHHcCCE
Confidence 001 2567777752 25678999997 899999877 88999999999999
Q ss_pred EEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhcC
Q 005009 657 VIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 657 LI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+||+++ +|. ..+..+.++ +|++ +++|.|+|+ .++|++++++++++.+..
T Consensus 171 li~Dea~~-~~~--~~~~~~~~~--~d~~~~s~~K~l~~~-~g~g~~~~~~~~~~~~~~ 223 (411)
T 3nnk_A 171 FYTDATAS-LGG--NPLETDVWG--LDAVSAGMQKCLGGP-SGTSPITLSARMEEAIRR 223 (411)
T ss_dssp EEEECTTT-BTT--BCCCTTTTT--CSEEECCSTTTTCCC-SSEEEEEECHHHHHHHHT
T ss_pred EEEECCcc-cCC--cccchhccC--CcEEEecCccccCCC-CceEEEEECHHHHHHHhh
Confidence 99999986 322 224444444 5655 566999887 589999999999887653
No 135
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.24 E-value=9.5e-12 Score=135.10 Aligned_cols=90 Identities=11% Similarity=0.014 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc-cCccccCccccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq-TGfGRtG~~~a~e~~g 679 (719)
+.+++.+.+ .++++|++ +|. .+ ...+ +++|+++|++||++||+||+| +|+.++|.+.....
T Consensus 159 ~~l~~~i~~-------~~~~~v~~~~~~-~~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-- 221 (420)
T 3gbx_A 159 DEMAKLAKE-------HKPKMIIGGFSA-YS---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-- 221 (420)
T ss_dssp HHHHHHHHH-------HCCSEEEECCTT-CC---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--
T ss_pred HHHHHHHHh-------cCCeEEEEecCc-cC---CccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcccc--
Confidence 567777763 13567777 565 43 3333 899999999999999999998 47766676443322
Q ss_pred CCcceee--ehhccCCCccchheeEeCH---HHHhhh
Q 005009 680 CVPDIAC--YGKLLTGGVIPLAATLATN---AVFDSF 711 (719)
Q Consensus 680 v~PDIvt--lgK~LggG~~Plsavl~~~---~i~~~~ 711 (719)
.+||++ ++|+++|. ..|++++++ ++.+.+
T Consensus 222 -~~di~~~s~sK~~~g~--~gg~~~~~~~~~~~~~~~ 255 (420)
T 3gbx_A 222 -HAHVVTTTTHKTLAGP--RGGLILAKGGDEELYKKL 255 (420)
T ss_dssp -TSSEEEEESSGGGCSC--SCEEEEESSCCHHHHHHH
T ss_pred -cCCEEEeecccCCCCC--CceEEEEcCCcHHHHHHh
Confidence 389997 66999742 246677876 666654
No 136
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.23 E-value=1.1e-10 Score=128.23 Aligned_cols=225 Identities=10% Similarity=0.068 Sum_probs=133.7
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCC-ChHHHHHHHHHHhcc----CCCCCCeEE
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAY 465 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~-~~~~~~Lae~L~~~~----~~~~~~rv~ 465 (719)
.+|+ .+|||.+| .+.-.. +|.|++|++++++++.... ...+. .....+|.+.|++++ +.. .+.++
T Consensus 53 ~~~~----~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~-~~~i~ 123 (432)
T 3ei9_A 53 YPDA----QVISLGIG---DTTEPI-PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG-DDDVF 123 (432)
T ss_dssp CTTC----CCEECSSC---CCCSCC-CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC-GGGEE
T ss_pred CCCC----CeEEccCC---CCCCCC-CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC-cceEE
Confidence 3466 88999886 344456 9999999999998654321 11121 122356666666653 322 36899
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCC
Q 005009 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (719)
Q Consensus 466 f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~ 545 (719)
|++++++|+..+..++ +. ...|++.+.+||+....+........+... ..
T Consensus 124 ~t~G~~~al~~l~~l~------~~----------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~----- 173 (432)
T 3ei9_A 124 VSDGAKCDISRLQVMF------GS----------------NVTIAVQDPSYPAYVDSSVIMGQTGQFNTD---VQ----- 173 (432)
T ss_dssp EESCHHHHHHHHHHHH------CT----------------TCCEEEEESCCTHHHHHHHHHTCSCCEETT---TT-----
T ss_pred ECCChHHHHHHHHHHc------CC----------------CCEEEEeCCCCHHHHHHHHHcCCccccccc---cc-----
Confidence 9999999998643222 11 247999999999865443322211100000 00
Q ss_pred cccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 005009 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (719)
Q Consensus 546 ~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv 625 (719)
... ....++.. +. ..+ .. . +++ ..++.+|++
T Consensus 174 ~~~---------~~~~~~~~----------------~~-~~~--~~-----------~----l~~------~~~~~~v~l 204 (432)
T 3ei9_A 174 KYG---------NIEYMRCT----------------PE-NGF--FP-----------D----LST------VGRTDIIFF 204 (432)
T ss_dssp EET---------TCEEEECC----------------GG-GTT--SC-----------C----GGG------CCCCSEEEE
T ss_pred ccC---------ceEEeccC----------------cc-cCC--cC-----------C----hhh------CCCCCEEEE
Confidence 000 00111111 00 000 00 0 111 123445555
Q ss_pred ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC----CCcceeeehhccC-CCccchhe
Q 005009 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG----CVPDIACYGKLLT-GGVIPLAA 700 (719)
Q Consensus 626 EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g----v~PDIvtlgK~Lg-gG~~Plsa 700 (719)
... +...|.+. +.+.+++|.++|++||+++|+||++++|...+.......+. ....+.+++|.+| .| +++|+
T Consensus 205 ~~p-~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~r~G~ 281 (432)
T 3ei9_A 205 CSP-NNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG-VRLGW 281 (432)
T ss_dssp ESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT-TCCEE
T ss_pred eCC-CCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc-cceEE
Confidence 544 67777654 77889999999999999999999999886655544333322 2233558999998 88 79999
Q ss_pred eEeCHHH
Q 005009 701 TLATNAV 707 (719)
Q Consensus 701 vl~~~~i 707 (719)
+++++++
T Consensus 282 ~~~~~~~ 288 (432)
T 3ei9_A 282 TVIPKKL 288 (432)
T ss_dssp EECCTTC
T ss_pred EEEChHH
Confidence 9999887
No 137
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.23 E-value=1.5e-10 Score=125.94 Aligned_cols=210 Identities=14% Similarity=0.069 Sum_probs=133.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCC-ChHHHHHHHHHHhcc--C-CCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV--G-KGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~-~~~~~~Lae~L~~~~--~-~~~~~rv~f~~SGsEA~ 474 (719)
.+||+.+|.. .++ . +|.|.+|+.++++...... ...+. .....+|.+.|++++ + -. .+.++|++++++|+
T Consensus 34 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~-~~~v~~~~G~~~al 108 (400)
T 3asa_A 34 TVINLSIGDT--TQP-L-NASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVD-AKEIFISDGAKVDL 108 (400)
T ss_dssp CCEECSSCCC--CCC-C-CHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSC-GGGEEEESCHHHHH
T ss_pred ceEeccCCCC--CCC-C-CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCC-HHHEEEccChHHHH
Confidence 7888877643 233 5 8999999999987653211 11121 223467888888873 3 11 36899999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
+.++++. .. ..+|++...+||+.... +...|.. .
T Consensus 109 ~~~~~~~------~~----------------gd~Vl~~~p~y~~~~~~-~~~~g~~---~-------------------- 142 (400)
T 3asa_A 109 FRLLSFF------GP----------------NQTVAIQDPSYPAYLDI-ARLTGAK---E-------------------- 142 (400)
T ss_dssp HHHHHHH------CS----------------SCEEEEEESCCHHHHHH-HHHTTCS---E--------------------
T ss_pred HHHHHHc------CC----------------CCEEEECCCCcHHHHHH-HHHcCCc---c--------------------
Confidence 9866543 11 24799999999985432 2222210 0
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
...++.... +.+ ..+ ++ . ..++.+|+++.. +...|
T Consensus 143 ----~~~~~~~~~-----------------~~~--~~~---------------l~-----~-~~~~~~v~l~~p-~nptG 177 (400)
T 3asa_A 143 ----IIALPCLQE-----------------NAF--FPE---------------FP-----E-DTHIDILCLCSP-NNPTG 177 (400)
T ss_dssp ----EEEEECCGG-----------------GTT--CCC---------------CC-----T-TCCCSEEEEESS-CTTTC
T ss_pred ----eEecccchh-----------------cCc--ccC---------------hh-----h-ccCccEEEEeCC-CCCCC
Confidence 001111100 000 000 01 0 124567777665 77778
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcc----eeeehhccC-CCccchheeEeCHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAV 707 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PD----IvtlgK~Lg-gG~~Plsavl~~~~i 707 (719)
.+ .|.+.+++|.++|++||+++|+||++++|+..|.. .....++-.+| +.+++|.+| .| +++|++++++++
T Consensus 178 ~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-lriG~~~~~~~~ 254 (400)
T 3asa_A 178 TV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG-IRLGWTVIPQEL 254 (400)
T ss_dssp CC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTT-CCCEEEECCTTC
T ss_pred Cc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcc-hheeEEeeChhh
Confidence 76 47899999999999999999999999999877752 22322322244 558999998 88 799999999887
No 138
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.23 E-value=1.1e-11 Score=132.25 Aligned_cols=214 Identities=13% Similarity=-0.002 Sum_probs=131.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCCCC-ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENV-YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~-~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~A 477 (719)
+|+|..+ .|.+||++.||.+.++++++++.+... ....+. .+...+|.++|+++.+. +..+|++||++|++.|
T Consensus 4 ~~~~~~~--~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~---~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 4 RLRTSFQ--QTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM---DDAVFFPSGTMAQQVA 78 (357)
T ss_dssp HHHHHHH--TCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC---SEEEEESCHHHHHHHH
T ss_pred hhhhHHH--hhcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHH
Confidence 6777332 367889988899999999888764311 111122 35678999999998873 5667789999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++.+. .. +..++|..+..||............ .
T Consensus 79 l~~~~-~~-------------------gd~~~vi~~~~~~~~~~~~~~~~~~---------------------------~ 111 (357)
T 3lws_A 79 LRIWS-DE-------------------TDNRTVAYHPLCHLEIHEQDGLKEL---------------------------H 111 (357)
T ss_dssp HHHHH-HH-------------------HTCCEEEECTTCHHHHSSTTHHHHH---------------------------S
T ss_pred HHHHh-hc-------------------CCCcEEEecccceeeeeccchhhhc---------------------------c
Confidence 98872 11 1122666677777643321100000 0
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC-ccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG-GMH 636 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g-G~~ 636 (719)
+...+++|... .. -| .+.+++. . ++++|++++. ++.. |.
T Consensus 112 g~~~~~v~~~~------------~~--------~d--------~~~l~~~---------~-~~~~v~~~~p-~np~~G~- 151 (357)
T 3lws_A 112 PIETILVGAAD------------RL--------MT--------LDEIKAL---------P-DIACLLLELP-QREIGGV- 151 (357)
T ss_dssp SCEEEECSCTT------------SC--------CC--------HHHHHTC---------C-SCSEEEEESS-BGGGTSB-
T ss_pred CcEEEEecCCC------------CC--------cC--------HHHHhcC---------c-CcceEEEEcc-cccCCce-
Confidence 01111122100 00 01 1333321 2 2678999986 6654 54
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEecccc-----CccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHh
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFT-----GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-----GfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
+.+.+.+++|.++|++||++||+||++. ++|++...+. + ..|++ +++|+++|. ..|.+++++++++
T Consensus 152 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~----~~d~~~~s~sK~~~~~--~gg~~~~~~~~~~ 224 (357)
T 3lws_A 152 APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-G----LFDSIYISFYKGLGGI--AGAILAGPAAFCQ 224 (357)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-T----TSSEEEEESSSTTCCS--SCEEEEECHHHHH
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-h----cCCEEEEeccccCCCC--ceEEEEcCHHHHH
Confidence 5679999999999999999999999864 3444443332 1 23544 899999653 1267888888887
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 225 ~~~ 227 (357)
T 3lws_A 225 TAR 227 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 139
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.23 E-value=9.9e-11 Score=127.54 Aligned_cols=190 Identities=10% Similarity=-0.011 Sum_probs=125.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
++++.+++..+...........+.++...++.++|+++.+. +.+++++||++|++.|++.+. +.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~-----~~-------- 102 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG---EAGLATASGISAITTTLLTLC-----QQ-------- 102 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT--------
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CC--------
Confidence 56777776643332222222234578889999999999873 578899999999999999872 11
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
..+||..+.+||+.......+... . |...+.+|
T Consensus 103 --------gd~vi~~~~~~~~~~~~~~~~~~~---~------------------------g~~~~~v~------------ 135 (398)
T 2rfv_A 103 --------GDHIVSASAIYGCTHAFLSHSMPK---F------------------------GINVRFVD------------ 135 (398)
T ss_dssp --------TCEEEEESSSCHHHHHHHHTHHHH---T------------------------TCEEEEEC------------
T ss_pred --------CCEEEEcCCCcccHHHHHHHHHHH---c------------------------CCEEEEeC------------
Confidence 247888888888743322111000 0 00001111
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
.+| .+.+++.+. .++++|++|+. ++..|.+.+ +++|.++|++||+++
T Consensus 136 --~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~l 182 (398)
T 2rfv_A 136 --AAK------------------PEEIRAAMR--------PETKVVYIETP-ANPTLSLVD----IETVAGIAHQQGALL 182 (398)
T ss_dssp --TTS------------------HHHHHHHCC--------TTEEEEEEESS-BTTTTBCCC----HHHHHHHHHHTTCEE
T ss_pred --CCC------------------HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEE
Confidence 111 245666653 36789999997 898898886 999999999999999
Q ss_pred EEeccccCccccCccccccccCCCcce--eeehhccCCCccch-heeEeCHHHHh
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPL-AATLATNAVFD 709 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDI--vtlgK~LggG~~Pl-savl~~~~i~~ 709 (719)
|+||+++. |..+..+ .++ +|+ .+++|.+++...++ |++++++++++
T Consensus 183 i~De~~~~-~~~~~~~---~~~--~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~ 231 (398)
T 2rfv_A 183 VVDNTFMS-PYCQQPL---QLG--ADIVVHSVTKYINGHGDVIGGIIVGKQEFID 231 (398)
T ss_dssp EEECTTTC-TTTCCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred EEECCCcc-cccCCch---hhC--CcEEEEeCcccccCCCCceEEEEEECHHHHH
Confidence 99999963 2333322 234 565 58999998633688 89999998876
No 140
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.23 E-value=2.2e-11 Score=129.05 Aligned_cols=209 Identities=14% Similarity=0.027 Sum_probs=132.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~Al 478 (719)
+++|+..| .++ . +|+|.+|+.+++. +.. ..+.++...++.++|+++++.. ..+.++|+++|++|++.++
T Consensus 4 ~~~~~~~g----p~~-~-~~~v~~a~~~~~~---~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~ 73 (366)
T 1m32_A 4 NYLLLTPG----PLT-T-SRTVKEAMLFDSC---TWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVL 73 (366)
T ss_dssp -CEECSSS----SCC-C-CHHHHHTTCCCCC---TTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHH
T ss_pred ccccccCC----CcC-C-CHHHHHHHhhhhc---CCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHH
Confidence 46777776 233 6 8999999988642 211 0111255678888888887621 1247999999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
+.+. +. ..+||.....||+.+...+. ..|..
T Consensus 74 ~~~~-----~~----------------gd~vi~~~~~~~~~~~~~~~~~~g~~--------------------------- 105 (366)
T 1m32_A 74 GSAL-----GP----------------QDKVLIVSNGAYGARMVEMAGLMGIA--------------------------- 105 (366)
T ss_dssp HHSC-----CT----------------TCCEEEEESSHHHHHHHHHHHHHTCC---------------------------
T ss_pred HHhc-----CC----------------CCeEEEEeCCCccHHHHHHHHHhCCc---------------------------
Confidence 9871 11 23688888899986432111 11110
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...++.+... ..| .+.+++.+.+ . .++.+|++... +...|.+.
T Consensus 106 -~~~v~~~~~~-----------~~d------------------~~~l~~~l~~-----~-~~~~~v~~~~~-~nptG~~~ 148 (366)
T 1m32_A 106 -HHAYDCGEVA-----------RPD------------------VQAIDAILNA-----D-PTISHIAMVHS-ETTTGMLN 148 (366)
T ss_dssp -EEEEECCTTS-----------CCC------------------HHHHHHHHHH-----C-TTCCEEEEESE-ETTTTEEC
T ss_pred -eEEEeCCCCC-----------CCC------------------HHHHHHHHhc-----C-CCeEEEEEecc-cCCcceec
Confidence 0111111000 111 2567777763 1 13445555443 55568877
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHhhhcC
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+ +++|.++|++||+++|+||+++ +|... +..+. ..+|+++ ++|.++|+ .++|++++++++++.+..
T Consensus 149 ~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~ 216 (366)
T 1m32_A 149 P----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAA--LHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKG 216 (366)
T ss_dssp C----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTT--TTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTT
T ss_pred C----HHHHHHHHHHcCCEEEEECCcc-ccCcC--ccccc--cCccEEEecCcccccCC-CceEEEEECHHHHHhhcC
Confidence 6 8999999999999999999996 55543 22222 2479885 68999876 477999999999887653
No 141
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.22 E-value=3.6e-11 Score=132.92 Aligned_cols=171 Identities=15% Similarity=0.042 Sum_probs=120.2
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|+++.+ .+.+++++||++|++.|++.+. +. ...||+...+|||
T Consensus 77 r~~~p~~~~l~~~la~~~g---~~~~~~~~sG~~Ai~~al~~l~-----~~----------------Gd~Vi~~~~~y~~ 132 (414)
T 3ndn_A 77 RYGNPTVSVFEERLRLIEG---APAAFATASGMAAVFTSLGALL-----GA----------------GDRLVAARSLFGS 132 (414)
T ss_dssp TTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHTTC-----CT----------------TCEEEEESCCCHH
T ss_pred CCCChHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHHh-----CC----------------CCEEEEcCCccch
Confidence 4567889999999999887 3689999999999999998661 12 2479999999998
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.......... . . |...+.+| .+|
T Consensus 133 ~~~~~~~~~~-----~---------~-------------g~~~~~v~--------------~~d---------------- 155 (414)
T 3ndn_A 133 CFVVCSEILP-----R---------W-------------GVQTVFVD--------------GDD---------------- 155 (414)
T ss_dssp HHHHHHTHHH-----H---------T-------------TCEEEEEC--------------TTC----------------
T ss_pred HHHHHHHHHH-----H---------c-------------CcEEEEeC--------------CCC----------------
Confidence 3221111000 0 0 00011111 112
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++++|++|+. ++..|.+.+ +++|.++|++||++||+||+++ +|.++....+
T Consensus 156 --~~~l~~ai~--------~~t~~v~le~p-~NptG~~~~----l~~i~~la~~~g~~livDe~~~----~~~~~~~~~~ 216 (414)
T 3ndn_A 156 --LSQWERALS--------VPTQAVFFETP-SNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA----TPLLQQGFPL 216 (414)
T ss_dssp --HHHHHHHTS--------SCCSEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT----HHHHCCCGGG
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCcccc----HHHHHHHHHHcCCEEEEECCCc----ccccCCchhc
Confidence 255666664 25679999997 999998876 9999999999999999999996 3444433456
Q ss_pred CCCcceeeehhccCC-CccchheeEeCHHHHh
Q 005009 679 GCVPDIACYGKLLTG-GVIPLAATLATNAVFD 709 (719)
Q Consensus 679 gv~PDIvtlgK~Lgg-G~~Plsavl~~~~i~~ 709 (719)
|+...+.+++|.+++ |.+++|+++++++.+.
T Consensus 217 g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~ 248 (414)
T 3ndn_A 217 GVDVVVYSGTKHIDGQGRVLGGAILGDREYID 248 (414)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEECHHHHT
T ss_pred CCCeEeccCCccccCCCCceEEEEEECHHHHH
Confidence 665555568999987 6578899999988765
No 142
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.22 E-value=4.3e-11 Score=128.90 Aligned_cols=206 Identities=14% Similarity=0.051 Sum_probs=136.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|||.. ..++. +|++.+|+.+++.. +.. ....+...++.++|++.++.+ .+.++|+++|++|++.+++
T Consensus 10 ~yl~~~------~~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a~~~~~~ 77 (392)
T 2z9v_A 10 VITLTA------GPVNA-YPEVLRGLGRTVLY--DYD--PAFQLLYEKVVDKAQKAMRLS-NKPVILHGEPVLGLEAAAA 77 (392)
T ss_dssp SEECSS------SCCCC-CHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHTTCS-SCCEEESSCTHHHHHHHHH
T ss_pred ceeecC------CCcCC-CHHHHHHHhccccc--ccc--HHHHHHHHHHHHHHHHHhCCC-CCEEEEeCCchHHHHHHHH
Confidence 678754 34678 99999999987764 110 011234678888899888743 3689999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
.+. +. ..+|+....+||+.....+. ..|..
T Consensus 78 ~~~-----~~----------------gd~Vl~~~~~~~~~~~~~~~~~~g~~---------------------------- 108 (392)
T 2z9v_A 78 SLI-----SP----------------DDVVLNLASGVYGKGFGYWAKRYSPH---------------------------- 108 (392)
T ss_dssp HHC-----CT----------------TCCEEEEESSHHHHHHHHHHHHHCSC----------------------------
T ss_pred Hhc-----CC----------------CCEEEEecCCcccHHHHHHHHHcCCc----------------------------
Confidence 871 11 24799999999986311111 01100
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
...++.+... ..| .+.+++.+++ ..++.+|++++. +...|.+.+
T Consensus 109 ~~~v~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~ 152 (392)
T 2z9v_A 109 LLEIEVPYNE-----------AID------------------PQAVADMLKA------HPEITVVSVCHH-DTPSGTINP 152 (392)
T ss_dssp EEEEECCTTS-----------CCC------------------HHHHHHHHHH------CTTCCEEEEESE-EGGGTEECC
T ss_pred eEEeeCCCCC-----------CCC------------------HHHHHHHHhc------CCCCcEEEEecc-CCCCceecc
Confidence 0111111000 011 2556777752 124668899987 888898876
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++|.++|++||+++|+||+++ +|... +..+.+ .+|++++ +|.++|+ .++|++++++++++.+.
T Consensus 153 ----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~sK~~~~~-~g~G~l~~~~~~~~~l~ 218 (392)
T 2z9v_A 153 ----IDAIGALVSAHGAYLIVDAVSS-FGGMK--THPEDC--KADIYVTGPNKCLGAP-PGLTMMGVSERAWAKMK 218 (392)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTT-BTTBS--CCGGGG--TCSEEEECSSSTTCCC-SCCEEEEECHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCeEEEEcccc-cCCcc--cccccc--cceEEEecCcccccCC-CceeEEEECHHHHHHhh
Confidence 8999999999999999999996 44322 222323 4788865 6999876 46799999999887663
No 143
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.21 E-value=6.3e-11 Score=128.83 Aligned_cols=196 Identities=12% Similarity=0.030 Sum_probs=112.6
Q ss_pred CCCCCHHHHHHHHHhhh-hcccccC------CCCCChHHHHHH-HHHHhccCCCCCCeE-EEeCChHHHHHHHHHHHHHH
Q 005009 414 DATLQIELARDMGYTAA-RFGHVMF------PENVYEPALECA-ELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRK 484 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~~-~~~~~~~------~~~~~~~~~~La-e~L~~~~~~~~~~rv-~f~~SGsEA~E~AlKlA~r~ 484 (719)
.+. ||+|++|+.+++. .+.+... .....+...+++ +++++..+. +.+ ++++||++|++.|++.+.
T Consensus 42 ~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~v~~~~Gs~a~~~al~~~~-- 115 (425)
T 3ecd_A 42 NIV-SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA---GHANVQPHSGAQANGAVMLALA-- 115 (425)
T ss_dssp CCC-CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHC--
T ss_pred CCC-CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC---CCceeecCchHHHHHHHHHHcc--
Confidence 456 8999999999984 4322210 011123556666 667777763 455 459999999999998771
Q ss_pred hhccccccccccCCCccccCcceEEEEEeCCcccC-cccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceee
Q 005009 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD-TLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562 (719)
Q Consensus 485 ~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~-t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 562 (719)
+. ..+|++...+||+. +.+... ..+.. + ..+
T Consensus 116 ---~~----------------gd~Vi~~~~~~~~~~~~~~~~~~~g~~-~---------------------------~~~ 148 (425)
T 3ecd_A 116 ---KP----------------GDTVLGMSLDAGGHLTHGAKPALSGKW-F---------------------------NAL 148 (425)
T ss_dssp ---CT----------------TCEEEEECC-------------------C---------------------------EEE
T ss_pred ---CC----------------CCEEEEcccccccceecchhhhhcccc-e---------------------------eee
Confidence 11 24789999988882 222211 11100 0 001
Q ss_pred cCc---chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccC
Q 005009 563 SLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMV 638 (719)
Q Consensus 563 ~~P---~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~p 638 (719)
++| +.+ ..| .+.+++.+.+ .++++|+++ |. .| .
T Consensus 149 ~~~~~~~~~-----------~~d------------------~~~l~~~i~~-------~~~~~v~~~~~~-~~---~--- 185 (425)
T 3ecd_A 149 QYGVSRDTM-----------LID------------------YDQVEALAQQ-------HKPSLIIAGFSA-YP---R--- 185 (425)
T ss_dssp EECCCTTTS-----------SCC------------------HHHHHHHHHH-------HCCSEEEEECSC-CC---S---
T ss_pred ecCCCcccC-----------ccC------------------HHHHHHHHhh-------cCCcEEEEcccc-CC---C---
Confidence 111 000 001 2556777752 135678887 65 43 2
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccc-cCccccCccccccccCCCcceee--ehhccCCCccchheeEeC-HHHHhhh
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVq-TGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~-~~i~~~~ 711 (719)
...+++|+++|++||++||+||+| +|+.+.|.++.... .+|+++ ++|+++|+ .+|+++++ +++.+.+
T Consensus 186 -~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~---~~di~~~s~sK~l~g~--~~g~~~~~~~~~~~~~ 256 (425)
T 3ecd_A 186 -KLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE---HAHVVTSTTHKTLRGP--RGGFVLTNDEEIAKKI 256 (425)
T ss_dssp -CCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSGGGCCC--SCEEEEESCHHHHHHH
T ss_pred -cCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh---cCcEEEecCCcccCCC--CcEEEEeCCHHHHHHH
Confidence 334799999999999999999996 56666666543221 268875 56999654 46778887 5666554
No 144
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.21 E-value=8.7e-11 Score=125.56 Aligned_cols=213 Identities=12% Similarity=0.076 Sum_probs=137.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+|||.++.. .++ . +|+|++|+.++++..... ......+|.++|+++.+-. .+.++|+++|++|++.+++
T Consensus 31 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~y-----~~~~~~~lr~~la~~~~~~-~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 31 EVIKLASNEN--PFG-T-PPKAIECLRQNANKAHLY-----PDDSMIELKSTLAQKYKVQ-NENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CCEECSSCCC--TTC-S-CHHHHHHHHHHGGGTTSC-----CCTTCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEecCCCC--CCC-C-CHHHHHHHHHHHHhhccC-----CCCChHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 7899988643 466 5 899999999998753322 2222257888888877632 3689999999999999998
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +. ..+|+....+|++....+.. .|.
T Consensus 101 ~l~-----~~----------------gd~vl~~~~~~~~~~~~~~~-~g~------------------------------ 128 (365)
T 3get_A 101 SKL-----NS----------------KNAFLQAGVTFAMYEIYAKQ-CGA------------------------------ 128 (365)
T ss_dssp HHC-----CT----------------TCEEEECSSCCTHHHHHHHH-HTC------------------------------
T ss_pred HHh-----CC----------------CCEEEEeCCChHHHHHHHHH-cCC------------------------------
Confidence 761 11 24788888888764332211 111
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+.+| ..+ + .. ...+.+++.+. .++.+|+++.. +...|.+. |
T Consensus 129 ~~~~v~--------------~~~---------~--~~--~d~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~-~ 171 (365)
T 3get_A 129 KCYKTQ--------------SIT---------H--NL--DEFKKLYETHK--------DEIKLIFLCLP-NNPLGECL-D 171 (365)
T ss_dssp EEEECS--------------SSS---------C--CH--HHHHHHHHHTT--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred EEEEEe--------------cCC---------C--CC--CCHHHHHHHhC--------CCCCEEEEcCC-CCCCCCCc-C
Confidence 011111 000 0 00 11356666663 35677777654 67677766 5
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCcc---ccCccc-cc---cccCCCcceeeehhccC-CCccchheeEeCHHHHhhh
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFW---RLGVET-TA---DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfG---RtG~~~-a~---e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
.+.++++.++| ++|+++|+||++++|. ..+... .. +.++....+.+++|.+| .| +++|++++++++.+.+
T Consensus 172 ~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 249 (365)
T 3get_A 172 ASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAF 249 (365)
T ss_dssp HHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHH
Confidence 66677777777 6799999999999775 322222 11 22333344448999998 78 7999999999998877
Q ss_pred cC
Q 005009 712 VG 713 (719)
Q Consensus 712 ~~ 713 (719)
..
T Consensus 250 ~~ 251 (365)
T 3get_A 250 YK 251 (365)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 145
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.21 E-value=6.5e-11 Score=129.24 Aligned_cols=170 Identities=12% Similarity=-0.008 Sum_probs=117.5
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...++.++|+++.+. +.+++++||++|++.|++.+. +. ..+||+.+.+||+.
T Consensus 62 ~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~-----~~----------------gd~vl~~~~~~~~~ 117 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEGG---EAGLALASGMGAITSTLWTLL-----RP----------------GDEVLLGNTLYGCT 117 (398)
T ss_dssp -CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEESSCCSHH
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----cC----------------CCEEEEeCCCchhH
Confidence 4578888999999999874 588999999999999999871 11 24789999988885
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......+.... + .....+| ..|
T Consensus 118 ~~~~~~~~~~~---g------------------------~~~~~~~--------------~~d----------------- 139 (398)
T 1gc0_A 118 FAFLHHGIGEF---G------------------------VKLRHVD--------------MAD----------------- 139 (398)
T ss_dssp HHHHHHTGGGG---T------------------------CEEEEEC--------------TTC-----------------
T ss_pred HHHHHHHHHHc---C------------------------CEEEEEC--------------CCC-----------------
Confidence 43321111000 0 0000011 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. +++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+++.+ ..+..+ .++
T Consensus 140 -~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~-~~~~~~---~~~ 201 (398)
T 1gc0_A 140 -LQALEAAMT--------PATRVIYFESP-ANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP-YLQRPL---ELG 201 (398)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-HHCCGG---GGT
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-ccCCch---hhC
Confidence 245666654 36889999997 888898876 999999999999999999999743 333322 345
Q ss_pred CCcceeeehhccCCCccch-heeEeCHHHHh
Q 005009 680 CVPDIACYGKLLTGGVIPL-AATLATNAVFD 709 (719)
Q Consensus 680 v~PDIvtlgK~LggG~~Pl-savl~~~~i~~ 709 (719)
....+.+++|.++++..++ |++++++++++
T Consensus 202 ~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~ 232 (398)
T 1gc0_A 202 ADLVVHSATKYLSGHGDITAGIVVGSQALVD 232 (398)
T ss_dssp CSEEEEETTTTTTCSSSCCCEEEEECHHHHH
T ss_pred ceEEEECCccccCCCCCCeEEEEEEChHHHH
Confidence 4444558999999754687 88888887654
No 146
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.20 E-value=7.3e-11 Score=128.52 Aligned_cols=196 Identities=13% Similarity=0.070 Sum_probs=132.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|||+.++.... .|++.+|+.++++...+. ..+...++.++|+++++. +.++|++||++|++.+++
T Consensus 31 ~~id~~~~~~~~------~~~v~~a~~~~~~~~~y~-----~~~~~~~l~~~la~~~~~---~~~v~~~~Gt~a~~~~l~ 96 (399)
T 2oga_A 31 PFLDLKAAYEEL------RAETDAAIARVLDSGRYL-----LGPELEGFEAEFAAYCET---DHAVGVNSGMDALQLALR 96 (399)
T ss_dssp CSCCHHHHHHHT------HHHHHHHHHHHHHHTCCS-----SSHHHHHHHHHHHHHTTS---SEEEEESCHHHHHHHHHH
T ss_pred cccccCcCCCCC------CHHHHHHHHHHHhcCCCC-----CchhHHHHHHHHHHHHCC---CeEEEecCHHHHHHHHHH
Confidence 799998876642 289999999998763221 246678999999999873 578999999999999998
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.+ + .+. ..+|+....+||+ +..++...|...
T Consensus 97 ~~-~---~~~----------------gd~vl~~~~~~~~-~~~~~~~~g~~~---------------------------- 127 (399)
T 2oga_A 97 GL-G---IGP----------------GDEVIVPSHTYIA-SWLAVSATGATP---------------------------- 127 (399)
T ss_dssp HT-T---CCT----------------TCEEEEESSSCTH-HHHHHHHTTCEE----------------------------
T ss_pred Hh-C---CCC----------------cCEEEECCCccHH-HHHHHHHCCCEE----------------------------
Confidence 76 2 111 2479999999988 333333332110
Q ss_pred eeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 560 ~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
..++... .+ ..| .+.+++.+. .++++|+++.. .|.+.+
T Consensus 128 ~~~~~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~n~----tG~~~~ 166 (399)
T 2oga_A 128 VPVEPHEDHP-----------TLD------------------PLLVEKAIT--------PRTRALLPVHL----YGHPAD 166 (399)
T ss_dssp EEECBCSSSS-----------SBC------------------HHHHHHHCC--------TTEEEECCBCG----GGCCCC
T ss_pred EEEecCCCCC-----------CcC------------------HHHHHHhcC--------CCCeEEEEeCC----cCCccC
Confidence 0111100 00 011 245666664 25778886654 355554
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccc--cCccccccccCCCcceeeeh----hccCC-CccchheeEeC-HHHHhh
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDS 710 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR--tG~~~a~e~~gv~PDIvtlg----K~Lgg-G~~Plsavl~~-~~i~~~ 710 (719)
+++|.++|++||+++|+||+++ +|. .|. .++..+|+++++ |.+|+ | +.|+++++ +++++.
T Consensus 167 ----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~-----~~~~~~di~~~S~~~sK~~~~~G--~~g~~~~~~~~~~~~ 234 (399)
T 2oga_A 167 ----MDALRELADRHGLHIVEDAAQA-HGARYRGR-----RIGAGSSVAAFSFYPGKNLGCFG--DGGAVVTGDPELAER 234 (399)
T ss_dssp ----HHHHHHHHHHHTCEECEECTTC-TTCEETTE-----ETTCTTCEEEEECCTTSSSCCSS--CCEEEEESCHHHHHH
T ss_pred ----HHHHHHHHHHcCCEEEEECccc-ccCccCCe-----ecccccCEEEEeCCCCccCCcCC--ceEEEEeCCHHHHHH
Confidence 8999999999999999999996 332 232 234447999884 99988 7 68888886 787665
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 235 l 235 (399)
T 2oga_A 235 L 235 (399)
T ss_dssp H
T ss_pred H
Confidence 4
No 147
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=99.20 E-value=3.7e-11 Score=129.59 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=106.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (719)
.+.+||+||++++|||+++..|.++++ ++|++++++++.|+|.....+ .
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~-----~~G~~v~~v~tgqtg~li~~~-------~------------------- 217 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERAL-----EKGIKAGFLATGQTGILIGAD-------A------------------- 217 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHH-----HTTCCEEEEECSHHHHHTTCS-------E-------------------
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHH-----hcCCeEEEEccCceeeeeccC-------C-------------------
Confidence 578999999999999999999999995 899999999987774311010 0
Q ss_pred hhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHH
Q 005009 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (719)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (719)
.+......+++.+.+.+ +
T Consensus 218 ------------------------------------------------------gv~~D~~~~~~~ag~~e-~------- 235 (350)
T 2g0t_A 218 ------------------------------------------------------GYVIDAVPADFVSGVVE-K------- 235 (350)
T ss_dssp ------------------------------------------------------ECCGGGSBGGGHHHHHH-H-------
T ss_pred ------------------------------------------------------CCCCCceecchhhHHHH-h-------
Confidence 11112344567777666 2
Q ss_pred HHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEc-C-----------CC-Ch
Q 005009 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD-G-----------RL-GG 263 (719)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~-~-----------~~-g~ 263 (719)
+...+. . +++|++||||+||++.|+.. ...+.+.+....+.|++.. . .+ +.
T Consensus 236 ~i~~~~--~-------------~~~D~ivVEGqGgl~~P~~~-~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~ 299 (350)
T 2g0t_A 236 AVLKLE--K-------------TGKEIVFVEGQGALRHPAYG-QVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPD 299 (350)
T ss_dssp HHHHHH--H-------------TTCSEEEEECCSCTTCTTTH-HHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCC
T ss_pred hHHHhh--h-------------cCCCEEEEccCeeccccCch-HHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcC
Confidence 222222 2 24999999999999999852 3378899999989888865 1 15 89
Q ss_pred HHHHHHHHHHHHhCCCcEEEEE-Ecc
Q 005009 264 ISGTISAYESLKLRGYDVVAVV-FED 288 (719)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi-~N~ 288 (719)
+++.+.+++.+. +.+|+|++ +|.
T Consensus 300 i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 300 FEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp HHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred HHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 999999999987 88999999 996
No 148
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.19 E-value=2.8e-10 Score=126.56 Aligned_cols=212 Identities=10% Similarity=-0.014 Sum_probs=133.4
Q ss_pred CHHHHHHHHHhhhhc---ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEE---eCChHHHHHHHHHHHHHHhhccccc
Q 005009 418 QIELARDMGYTAARF---GHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 418 hP~V~~Av~~q~~~~---~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f---~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
+++|.+|++++.... .......+......+++++|++..+. +.... ++||++|++.|++..+ +.
T Consensus 37 ~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~---~~~~~~i~~~sGt~Ai~~al~al~-----~~-- 106 (431)
T 3ht4_A 37 QFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGA---EAGLVRPQIISGTHAISTALFGIL-----RP-- 106 (431)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTC---SEECCBTTSCSHHHHHHHHHHTTC-----CT--
T ss_pred HHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCC---CcccccceeeCHHHHHHHHHHHhC-----CC--
Confidence 889999998864322 22222234456778899999998874 34443 6699999999987551 11
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhc
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (719)
...||+.++..|+.+...+.+++. ++.. + ... |.....+|
T Consensus 107 --------------Gd~Vl~~~~~~y~~~~~~~~l~g~--~~~~----~-~~~-------------G~~~~~v~------ 146 (431)
T 3ht4_A 107 --------------GDELLYITGKPYDTLEEIVGVRGK--GVGS----F-KEY-------------NIGYNAVP------ 146 (431)
T ss_dssp --------------TCEEEECSSSCCTTHHHHTTSSSC--SSSC----S-GGG-------------TCEEEECC------
T ss_pred --------------CCEEEEeCCCCchhHHHHHhhccc--ccch----H-HHc-------------CCEEEEeC------
Confidence 236888887888888877777653 2211 0 000 11111111
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHH
Q 005009 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (719)
Q Consensus 572 ~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~ 651 (719)
++. + + .-| .+.+++.+. .++.+|++|+-.+...|. ..+...+++|.++|+
T Consensus 147 --------~~~-~--~--~~d--------~e~l~~~l~--------~~tk~V~i~~sp~np~~~-~~~~~~l~~i~~la~ 196 (431)
T 3ht4_A 147 --------LTE-G--G--LVD--------FEAVAAAIH--------SNTKMIGIQRSKGYATRP-SFTISQIKEMIAFVK 196 (431)
T ss_dssp --------BCT-T--S--SBC--------HHHHHHHCC--------TTEEEEEEECSCTTSSSC-CCCHHHHHHHHHHHH
T ss_pred --------CCC-C--C--CcC--------HHHHHhhcC--------CCCeEEEEECCCCCCCCC-cCCHHHHHHHHHHHH
Confidence 000 0 0 001 255666664 368899999521323333 346778999999999
Q ss_pred h--cCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCc-cchheeEeCHHHHhhhc
Q 005009 652 N--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV-IPLAATLATNAVFDSFV 712 (719)
Q Consensus 652 k--~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~-~Plsavl~~~~i~~~~~ 712 (719)
+ ||+++|+||++..+...+.... +|+...+.+++|.||||+ .+.|++++++++.+.+.
T Consensus 197 ~~~~~~~livDea~~~~~~~~~~~~---~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 257 (431)
T 3ht4_A 197 EIKPDVVVFVDNCYGEFIEEQEPCH---VGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACA 257 (431)
T ss_dssp HHCTTCEEEEECTTCTTSSSCCGGG---TTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred hhCCCCEEEEeCCChhhccCCCccc---cCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHH
Confidence 9 9999999999987755444332 243333346999999854 45678888998887763
No 149
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.19 E-value=2e-10 Score=125.32 Aligned_cols=227 Identities=9% Similarity=0.011 Sum_probs=136.3
Q ss_pred eeeecccccccc-CCCCCCCHHHHHHHHHhhhhc--ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQ-GPDATLQIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~-~lGH~~hP~V~~Av~~q~~~~--~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~ 476 (719)
.+||+..|.-.. .......+.|.+|+.+..+.. .+.. .....+....+++.+....+....+.++++++|++|++.
T Consensus 39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~ 117 (418)
T 3rq1_A 39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAP-IAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHH 117 (418)
T ss_dssp GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCC-TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHH
T ss_pred CeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCC-CCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHH
Confidence 556665543211 112222678888887655421 2211 112334455666666554432111289999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... .. ..+|+....+|++....+.. .|..
T Consensus 118 ~~~~l~-----~~----------------gd~Vl~~~p~~~~~~~~~~~-~g~~-------------------------- 149 (418)
T 3rq1_A 118 LIHNYT-----EP----------------GDEVLTADWYWGAYRVICSD-TGRT-------------------------- 149 (418)
T ss_dssp HHHHHS-----CT----------------TCEEEEESSCCTHHHHHHHH-TTCE--------------------------
T ss_pred HHHHhc-----CC----------------CCEEEECCCCchhHHHHHHH-cCCE--------------------------
Confidence 998661 11 24788888888875443222 2110
Q ss_pred CcceeecC-cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCc
Q 005009 557 NSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGG 634 (719)
Q Consensus 557 ~~~~~~~~-P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG 634 (719)
...++. ++.+ ..| .+.+++.+.+. ..+...++++++ |. +...|
T Consensus 150 --~~~v~~~~~~~-----------~~d------------------~~~l~~~l~~~---~~~~~~~~vi~~~p~-~NPtG 194 (418)
T 3rq1_A 150 --LVTYSLFDEHN-----------NFN------------------HEAFQNRVNEL---AAKQTNVVVIFNTPG-NNPTG 194 (418)
T ss_dssp --EEEECSBCTTS-----------SBC------------------HHHHHHHHHHH---HHHCSEEEEEEECSS-CTTTC
T ss_pred --EEEEeeeCCCC-----------CcC------------------HHHHHHHHHHh---hccCCCEEEEEeCCC-CCCCC
Confidence 001111 0000 001 24455555420 001234456665 74 67778
Q ss_pred cccCCHHHHHHHHHHHH------hcCCcEEEeccccCccccCc---cccccccCCCcce---e--eehhccC-CCccchh
Q 005009 635 MHMVDPLFQRILVKECQ------NRKIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI---A--CYGKLLT-GGVIPLA 699 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~------k~gilLI~DEVqTGfGRtG~---~~a~e~~gv~PDI---v--tlgK~Lg-gG~~Pls 699 (719)
.+. +.+.+++|.++|+ +||+++|+||++++|++.|. .+.....++.+|+ + +++|.+| .| +++|
T Consensus 195 ~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G 272 (418)
T 3rq1_A 195 YSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYG-QRVG 272 (418)
T ss_dssp CCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCS-SCCE
T ss_pred CCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcC-Ccce
Confidence 765 6677999999999 89999999999999998875 3444455677773 3 7999998 57 7999
Q ss_pred eeEe---CHHHHhhhc
Q 005009 700 ATLA---TNAVFDSFV 712 (719)
Q Consensus 700 avl~---~~~i~~~~~ 712 (719)
++++ ++++++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~ 288 (418)
T 3rq1_A 273 AMIGISDDEEIADEFF 288 (418)
T ss_dssp EEEEEESSHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHH
Confidence 9999 899888764
No 150
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.18 E-value=7.1e-11 Score=126.75 Aligned_cols=207 Identities=14% Similarity=0.073 Sum_probs=133.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
++||+.++. +.+|+. |.+ + +.... .+......+|.++|++..+-+ .+.++++++|+||++.+++
T Consensus 30 ~~i~l~~~~--~~~~~~--~~v--a----~~~~~-----~Y~~~~~~~lr~~la~~~~~~-~~~v~~~~G~~~ai~~~~~ 93 (356)
T 1fg7_A 30 GDVWLNANE--YPTAVE--FQL--T----QQTLN-----RYPECQPKAVIENYAQYAGVK-PEQVLVSRGADEGIELLIR 93 (356)
T ss_dssp CSEECSSCC--CSSCCC--CCC--C----CCCTT-----SCCCSSCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred ceEEeeCCC--CCCCCC--HhH--h----hhhhc-----cCCCccHHHHHHHHHHHhCCC-hHHEEEcCCHHHHHHHHHH
Confidence 689998875 578885 445 2 21111 122222467888888877643 3689999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... . +++.+|+....+||+....+.. .|.. .
T Consensus 94 ~~~-----~---------------~g~d~Vl~~~p~~~~~~~~~~~-~g~~----------------------------~ 124 (356)
T 1fg7_A 94 AFC-----E---------------PGKDAILYCPPTYGMYSVSAET-IGVE----------------------------C 124 (356)
T ss_dssp HHC-----C---------------TTTCEEEECSSSCTHHHHHHHH-HTCE----------------------------E
T ss_pred HHh-----C---------------CCCCEEEEeCCChHHHHHHHHH-cCCE----------------------------E
Confidence 771 1 2225799999999996544322 1110 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++..+.+ . -| .+.+++.+ . ++.+|++... +...|.+. |
T Consensus 125 ~~v~~~~~~------------~---------~d--------~~~l~~~i-------~--~~~~v~l~~p-~nptG~~~-~ 164 (356)
T 1fg7_A 125 RTVPTLDNW------------Q---------LD--------LQGISDKL-------D--GVKVVYVCSP-NNPTGQLI-N 164 (356)
T ss_dssp EECCCCTTS------------C---------CC--------HHHHHTSC-------T--TEEEEEEESS-CTTTCCCC-C
T ss_pred EEeeCCCCC------------C---------CC--------HHHHHHHh-------c--CCCEEEEeCC-CCCCCCCC-C
Confidence 011111000 0 00 13333222 1 4567777765 77778664 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccCCCcceeeehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
.+.++++.++|+ ||+++|+||++++|++...++.. +.++....+.+++|.+| .| +++|++++++++++.+..
T Consensus 165 ~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~ 238 (356)
T 1fg7_A 165 PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAG-LRCGFTLANEEVINLLMK 238 (356)
T ss_dssp HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCch-hhhEEEEeCHHHHHHHHH
Confidence 899999999999 99999999999998753334433 33343444568999998 78 799999999999887653
No 151
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.17 E-value=2.1e-11 Score=131.10 Aligned_cols=194 Identities=14% Similarity=0.072 Sum_probs=120.7
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
.+|++ +|.+.+++.+++.+..... .....+...+|.++|+++++. ++++|++||++|++.|++.+ +. +
T Consensus 6 ~~~~~-~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~~---~~~~~~~sGt~al~~al~~~-~~---~--- 73 (367)
T 3nyt_A 6 DLKNQ-QARIKDKIDAGIQRVLRHG-QYILGPEVTELEDRLADFVGA---KYCISCANGTDALQIVQMAL-GV---G--- 73 (367)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHC-CCSSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TC---C---
T ss_pred ccccc-ccccCHHHHHHHHHHHhcC-CccCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHh-CC---C---
Confidence 46677 7666666555554432211 112467788999999999873 58999999999999999987 21 1
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhh
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYS 570 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~ 570 (719)
...+||+...+|++.... +...|... ..++.. +.+
T Consensus 74 -------------~gd~Vi~~~~~~~~~~~~-~~~~G~~~----------------------------~~~~~~~~~~-- 109 (367)
T 3nyt_A 74 -------------PGDEVITPGFTYVATAET-VALLGAKP----------------------------VYVDIDPRTY-- 109 (367)
T ss_dssp -------------TTCEEEEESSSCTHHHHH-HHHTTCEE----------------------------EEECBCTTTC--
T ss_pred -------------CcCEEEECCCccHHHHHH-HHHcCCEE----------------------------EEEecCCccC--
Confidence 124788888887774433 22222110 011110 000
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
..|. +.+++.+. +++++|+++.. . |...+ +++|.++|
T Consensus 110 ---------~~d~------------------~~l~~~i~--------~~~~~v~~~~~-~---G~~~~----~~~i~~la 146 (367)
T 3nyt_A 110 ---------NLDP------------------QLLEAAIT--------PRTKAIIPVSL-Y---GQCAD----FDAINAIA 146 (367)
T ss_dssp ---------SBCG------------------GGTGGGCC--------TTEEEECCBCG-G---GCCCC----HHHHHHHH
T ss_pred ---------CcCH------------------HHHHHhcC--------cCCcEEEeeCC-c---cChhh----HHHHHHHH
Confidence 0011 22333332 36788886664 4 33333 99999999
Q ss_pred HhcCCcEEEecccc-CccccCccccccccCCCcceeeeh----hccCC-CccchheeEe-CHHHHhhh
Q 005009 651 QNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 651 ~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlg----K~Lgg-G~~Plsavl~-~~~i~~~~ 711 (719)
++||++||+||+|+ |+...|+. .+...|+++++ |.+|+ |. .|++++ ++++++.+
T Consensus 147 ~~~~~~li~D~a~~~g~~~~~~~-----~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~ 207 (367)
T 3nyt_A 147 SKYGIPVIEDAAQSFGASYKGKR-----SCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAI 207 (367)
T ss_dssp HHTTCCBEEECTTTTTCEETTEE-----TTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHH
T ss_pred HHcCCEEEEECccccCCeECCee-----ccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHH
Confidence 99999999999996 44333432 23334999987 99998 83 667777 46776654
No 152
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.16 E-value=5.7e-11 Score=127.99 Aligned_cols=195 Identities=12% Similarity=0.020 Sum_probs=128.1
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|++.+|+.+++... + . ....+...++.++|++.++.+..+.++|++||++|++.+++.++ +.
T Consensus 31 ~~~v~~a~~~~~~~~-~-~--~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-----~~-------- 93 (393)
T 2huf_A 31 PQRVLDAMSRPILGH-L-H--PETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL-----ED-------- 93 (393)
T ss_dssp CHHHHHHTTSCCCCT-T-S--HHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHHHhhhccC-C-C--HHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh-----CC--------
Confidence 899999998876541 1 0 11234567888899988874311279999999999999999872 11
Q ss_pred CCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
..+|+....+||+.....+ ...|.. ...++.+...
T Consensus 94 --------gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 129 (393)
T 2huf_A 94 --------GDVILIGHTGHWGDRSADMATRYGAD----------------------------VRVVKSKVGQ-------- 129 (393)
T ss_dssp --------TCEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred --------CCEEEEECCCcchHHHHHHHHHcCCe----------------------------eEEEeCCCCC--------
Confidence 2479999999998421111 001100 0111111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+.+ .++.+|+++.. +...|.+.+ +++|.++|++||++
T Consensus 130 ---~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~~ 176 (393)
T 2huf_A 130 ---SLS------------------LDEIRDALLI-------HKPSVLFLTQG-DSSTGVLQG----LEGVGALCHQHNCL 176 (393)
T ss_dssp ---CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTCE
T ss_pred ---CCC------------------HHHHHHHHhc-------cCCcEEEEEcc-CCCccccCC----HHHHHHHHHHcCCE
Confidence 011 2456666652 13567888886 888898877 89999999999999
Q ss_pred EEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 657 LI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|+||+|+ +|.. .+.... ..+|++++ +|.++|+ .++|++++++++++.+.
T Consensus 177 li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~sK~l~g~-~G~G~~~~~~~~~~~~~ 228 (393)
T 2huf_A 177 LIVDTVAS-LGGA--PMFMDR--WEIDAMYTGSQKVLGAP-PGITPVSFSHRAVERYK 228 (393)
T ss_dssp EEEECTTT-BTTB--CCCTTT--TTCSEEECCSSSTTCCC-SSCEEEEECHHHHHHHH
T ss_pred EEEEcccc-cCCC--Ccchhh--cCccEEEECCCcccccC-CCeEEEEECHHHHHHHh
Confidence 99999985 5543 222222 24788865 5998865 45689999999988764
No 153
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.16 E-value=4.5e-10 Score=126.40 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=68.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Ccceeee--hhccCCCc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvtl--gK~LggG~ 695 (719)
++.+|++... ....|.+.+ +++|.++|++||++|++||+++|+...+. +.....|+ .+|++++ .|.++++
T Consensus 258 ~~~~vv~~~~-~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p- 330 (497)
T 2qma_A 258 IPFAIVGTAG-TTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQT- 330 (497)
T ss_dssp EEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCC-
T ss_pred cceEEEEcCC-CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCC-
Confidence 3556777654 677788776 99999999999999999999998877666 55555677 8999987 9999988
Q ss_pred cchheeEeCHHH-Hhhh
Q 005009 696 IPLAATLATNAV-FDSF 711 (719)
Q Consensus 696 ~Plsavl~~~~i-~~~~ 711 (719)
+++|+++++++. ++.+
T Consensus 331 ~~~G~l~~~~~~~~~~~ 347 (497)
T 2qma_A 331 ISCGALLVNDKSNFKFL 347 (497)
T ss_dssp SSCEEEEESCGGGGGGG
T ss_pred cceEEEEEeCHHHHHHh
Confidence 589999987543 4444
No 154
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.16 E-value=1.4e-10 Score=129.93 Aligned_cols=210 Identities=12% Similarity=0.021 Sum_probs=131.6
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccC---CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccc
Q 005009 413 PDATLQIELARDMGYTAARFGHVMF---PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (719)
Q Consensus 413 lGH~~hP~V~~Av~~q~~~~~~~~~---~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~ 489 (719)
.+|. +|++++++.++...+...+. .....+...+++++|+++.+.+ ..++++++|++|+..|++++ |.+...+
T Consensus 75 ~~~~-~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~~~~~~ggt~a~~~al~~~-~~~~~~~ 150 (474)
T 1wyu_B 75 TMKY-NPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMD--AITLEPAAGAHGELTGILII-RAYHEDR 150 (474)
T ss_dssp CCCC-CCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHH-HHHHHHT
T ss_pred cccC-CHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCC--ceeecChHHHHHHHHHHHHH-HHHHHhc
Confidence 5688 99999999877322211000 0001245678889999888742 23567899999999999999 5543222
Q ss_pred cccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhh
Q 005009 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (719)
Q Consensus 490 G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (719)
|. ..+|.+||..+ .+|+.+..++...|.. ...++....+
T Consensus 151 Gd-----------~~~r~~Vlv~~-~~h~~~~~~~~~~G~~----------------------------vv~v~~~~~~- 189 (474)
T 1wyu_B 151 GE-----------GRTRRVVLVPD-SAHGSNPATASMAGYQ----------------------------VREIPSGPEG- 189 (474)
T ss_dssp TC-----------TTTCCEEEEET-TSCTHHHHHHHHTTCE----------------------------EEEECBCTTS-
T ss_pred CC-----------ccCCCEEEEeC-CcChhhHHHHHHCCCE----------------------------EEEecCCCCC-
Confidence 21 01244666654 8888877665544321 0111111000
Q ss_pred hcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHH
Q 005009 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (719)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~L 649 (719)
.-| .+.|++.+. +++++|+++.. . ..|.+. ..+++|.++
T Consensus 190 --------------------~~d--------~~~L~~~i~--------~~t~~v~~~~p-n-~~G~~~---~~l~~i~~l 228 (474)
T 1wyu_B 190 --------------------EVD--------LEALKRELG--------PHVAALMLTNP-N-TLGLFE---RRILEISRL 228 (474)
T ss_dssp --------------------SBC--------HHHHHHHCS--------TTEEEEEECSS-C-TTSCCC---TTHHHHHHH
T ss_pred --------------------CcC--------HHHHHHhhC--------CCceEEEEECC-C-CCcccC---CCHHHHHHH
Confidence 001 356676664 35889999974 3 467662 249999999
Q ss_pred HHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCC----ccchheeEeCHHHHhhhc
Q 005009 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG----VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 650 c~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG----~~Plsavl~~~~i~~~~~ 712 (719)
|++||+++|+||++.. +.+|.. ....+ .+|++++ +|.+++. -.++|++++++++++.+.
T Consensus 229 ~~~~g~~li~Dea~~~-~~~g~~-~~~~~--g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~ 293 (474)
T 1wyu_B 229 CKEAGVQLYYDGANLN-AIMGWA-RPGDM--GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLP 293 (474)
T ss_dssp HHHHTCEEEEEGGGGG-GTTTTC-CHHHH--TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCC
T ss_pred HHHcCCEEEEeCchhh-hhccCC-CcccC--CCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCC
Confidence 9999999999999953 234421 11223 3899987 8988632 158999999999888764
No 155
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.15 E-value=4.1e-11 Score=128.35 Aligned_cols=192 Identities=11% Similarity=0.072 Sum_probs=120.1
Q ss_pred ccCCCCCCCHHHH---HHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh
Q 005009 410 TQGPDATLQIELA---RDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (719)
Q Consensus 410 ~~~lGH~~hP~V~---~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~ 486 (719)
..++||+ +|.+. +++.+.+.... ....+...+|.++|+++++. +.++|++||++|++.|++.+ +.
T Consensus 8 ~~~l~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~~~~~-~~-- 75 (374)
T 3uwc_A 8 YSYLERQ-FADIEPYLNDLREFIKTAD-----FTLGAELEKFEKRFAALHNA---PHAIGVGTGTDALAMSFKML-NI-- 75 (374)
T ss_dssp SCCHHHH-TSSCHHHHHHHHHHHHHTC-----CSSCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-TC--
T ss_pred eeccccC-CCCchHHHHHHHHHHHcCC-----cccChhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-CC--
Confidence 3445666 55544 44444443321 12467788999999999874 58999999999999999876 21
Q ss_pred ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc
Q 005009 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (719)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (719)
....+|+....+||+.... +...|.. ...++..+
T Consensus 76 -----------------~~gd~v~~~~~~~~~~~~~-~~~~g~~----------------------------~~~~~~~~ 109 (374)
T 3uwc_A 76 -----------------GAGDEVITCANTFIASVGA-IVQAGAT----------------------------PVLVDSEN 109 (374)
T ss_dssp -----------------CTTCEEEEESSSCHHHHHH-HHHTTCE----------------------------EEEECBCT
T ss_pred -----------------CCCCEEEECCCccHHHHHH-HHHcCCE----------------------------EEEEecCC
Confidence 1124788888888885433 2222210 00111110
Q ss_pred hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHH
Q 005009 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (719)
Q Consensus 567 ~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~L 646 (719)
.+. -| .+.+++.+. .++.+|+ |. ...|...+ +++|
T Consensus 110 ~~~-----------~d------------------~~~l~~~~~--------~~~~~v~--~~--n~~G~~~~----~~~i 144 (374)
T 3uwc_A 110 GYV-----------ID------------------PEKIEAAIT--------DKTKAIM--PV--HYTGNIAD----MPAL 144 (374)
T ss_dssp TSS-----------BC------------------GGGTGGGCC--------TTEEEEC--CB--CGGGCCCC----HHHH
T ss_pred CCC-----------cC------------------HHHHHHhCC--------CCceEEE--Ee--CCcCCcCC----HHHH
Confidence 000 01 122333332 2566666 53 34566655 9999
Q ss_pred HHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh----hccCC-CccchheeEeCH-HHHhh
Q 005009 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLATN-AVFDS 710 (719)
Q Consensus 647 r~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~Lgg-G~~Plsavl~~~-~i~~~ 710 (719)
.++|++||+++|+||+|+. |..+..+..+..+|+++++ |.+|+ |. .|++++++ ++.+.
T Consensus 145 ~~~~~~~~~~li~D~~~~~----g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~ 208 (374)
T 3uwc_A 145 AKIAKKHNLHIVEDACQTI----LGRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEK 208 (374)
T ss_dssp HHHHHHTTCEEEEECTTCT----TCEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHH
T ss_pred HHHHHHcCCEEEEeCCCcc----CceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHH
Confidence 9999999999999999973 3335556667678999988 99988 73 67777654 55443
No 156
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.15 E-value=5.3e-11 Score=127.95 Aligned_cols=194 Identities=12% Similarity=0.077 Sum_probs=121.4
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
++||+ +|.+.+++.+++.+...... ....+...++.++|+++++ .+.++|++||++|++.|++.+ +. +
T Consensus 7 ~l~~~-~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~---~~~~i~~~sgt~al~~~l~~l-~~---~--- 74 (373)
T 3frk_A 7 SFKPM-HDEIEYEIKFKFEEIYKRNW-FILGDEDKKFEQEFADYCN---VNYCIGCGNGLDALHLILKGY-DI---G--- 74 (373)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHT---SSEEEEESCHHHHHHHHHHHT-TC---C---
T ss_pred CCCcc-cCCCCHHHHHHHHHHHHCCC-ccCCchHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-CC---C---
Confidence 46777 77766666655544322111 1345778899999999987 368999999999999999876 11 1
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhh
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYS 570 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~ 570 (719)
...+||+...+||+.. .++...|... ..++.. +.+.
T Consensus 75 -------------~gd~Vi~~~~~~~~~~-~~~~~~g~~~----------------------------~~~~~~~~~~~- 111 (373)
T 3frk_A 75 -------------FGDEVIVPSNTFIATA-LAVSYTGAKP----------------------------IFVEPDIRTYN- 111 (373)
T ss_dssp -------------TTCEEEEETTSCTHHH-HHHHHHSCEE----------------------------EEECEETTTTE-
T ss_pred -------------CcCEEEECCCCcHHHH-HHHHHcCCEE----------------------------EEEeccccccC-
Confidence 1247888888888843 3333332110 001100 0000
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
-| .+.+++.+. .++.+|++. ...|...+ +++|.++|
T Consensus 112 ----------~d------------------~~~l~~~l~--------~~~~~v~~~----n~~G~~~~----l~~i~~l~ 147 (373)
T 3frk_A 112 ----------ID------------------PSLIESAIT--------EKTKAIIAV----HLYGQPAD----MDEIKRIA 147 (373)
T ss_dssp ----------EC------------------GGGTGGGCC--------TTEEEEEEE----CCTTCCCC----HHHHHHHH
T ss_pred ----------cC------------------HHHHHHhcC--------CCCeEEEEE----CCCcCccc----HHHHHHHH
Confidence 01 122333332 256777733 33455555 89999999
Q ss_pred HhcCCcEEEeccccCccccCccccccccCCCcceeeeh----hccCC-CccchheeEeC-HHHHhh
Q 005009 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDS 710 (719)
Q Consensus 651 ~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~Lgg-G~~Plsavl~~-~~i~~~ 710 (719)
++||+++|+||+|+ + |..+....++..+|+++++ |++|+ |. .|+++++ +++.+.
T Consensus 148 ~~~~~~li~D~a~~-~---g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~~~~~~~~~ 207 (373)
T 3frk_A 148 KKYNLKLIEDAAQA-H---GSLYKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVTNDKDLAEK 207 (373)
T ss_dssp HHHTCEEEEECTTC-T---TCEETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEESCHHHHHH
T ss_pred HHcCCEEEEECCcc-c---CCEECCEeccccccEEEEeCcCCCccCccce--eEEEEeCCHHHHHH
Confidence 99999999999996 2 2234445666668999988 99988 73 5667765 445543
No 157
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.15 E-value=1.2e-10 Score=130.69 Aligned_cols=209 Identities=11% Similarity=0.002 Sum_probs=132.7
Q ss_pred CCCCCHHHHHHHHHhhhhcccccCCCC-CC----hHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHHHHHHHHhhc
Q 005009 414 DATLQIELARDMGYTAARFGHVMFPEN-VY----EPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSF 487 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~~~~~~~~~~~~-~~----~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~ 487 (719)
-|+ ++.+.+++.+++..+...+...+ .. +...++.++++++++.+ ..+.++|+++|+||+..|++.+ +.+..
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~-~~~~~ 151 (497)
T 3mc6_A 74 YHG-GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSA-KMYAL 151 (497)
T ss_dssp SCC-CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CCC-chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHH-HHHHH
Confidence 356 68999999999887654321111 12 33446777777777642 1357999999999999999999 54433
Q ss_pred c-ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc
Q 005009 488 D-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (719)
Q Consensus 488 ~-~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (719)
+ +|. .+..|+. ....|.....++...|.. ...++..+
T Consensus 152 ~~~g~-------------~~~~Vi~-~~~~h~~~~~~~~~~G~~----------------------------~~~v~~~~ 189 (497)
T 3mc6_A 152 HHRGI-------------TEPEIIA-PVTAHAGFDKAAYYFGMK----------------------------LRHVELDP 189 (497)
T ss_dssp HHSCC-------------SSCEEEE-ETTSCHHHHHHHHHSCCE----------------------------EEEECBCT
T ss_pred hcCCC-------------CCceEEE-eCCccHHHHHHHHHcCCe----------------------------EEEEecCc
Confidence 2 221 1234554 555566555544444321 01122111
Q ss_pred -hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHH
Q 005009 567 -WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (719)
Q Consensus 567 -~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~ 645 (719)
.++ .| .+.|++.+. .++++|+++.. +...|.+.+ +++
T Consensus 190 ~~~~-----------~d------------------~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~~----l~~ 227 (497)
T 3mc6_A 190 TTYQ-----------VD------------------LGKVKKFIN--------KNTVLLVGSAP-NFPHGIADD----IEG 227 (497)
T ss_dssp TTCS-----------BC------------------TTTTGGGCC--------SSEEEEEEETT-CTTTCCCCS----CTT
T ss_pred ccCc-----------CC------------------HHHHHHHHh--------hCCEEEEEECC-CCCCCcCCC----HHH
Confidence 110 01 123444442 35789999987 888898877 889
Q ss_pred HHHHHHhcCCcEEEeccccCcccc-------Ccc--ccccccCCCcceee--ehhccCCCccchheeEeCHHHHhhh
Q 005009 646 LVKECQNRKIPVIFDEVFTGFWRL-------GVE--TTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 646 Lr~Lc~k~gilLI~DEVqTGfGRt-------G~~--~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
|.++|++||++||+||+++|+.+. |.. +.+...|+ |+++ ..|.+.+| .++|+++++++.+...
T Consensus 228 i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~ 301 (497)
T 3mc6_A 228 LGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAP-KGSSVIMYRNSDLRMH 301 (497)
T ss_dssp TTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCC-SSCEEEECSSHHHHTT
T ss_pred HHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCC-CCceeEEecCHHHHhh
Confidence 999999999999999999987554 222 44455565 7665 45988777 6889999988776543
No 158
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.14 E-value=4.1e-10 Score=122.66 Aligned_cols=227 Identities=12% Similarity=0.032 Sum_probs=132.6
Q ss_pred eeeeccccccccCCCCC-CCHHHHHHHHH-hhhhcc-ccc-CCCCCChHHHHHHHHHHhccCCC-CCCeEEE--eCChHH
Q 005009 400 QQFDACASWWTQGPDAT-LQIELARDMGY-TAARFG-HVM-FPENVYEPALECAELLLQGVGKG-WASRAYF--SDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~-~hP~V~~Av~~-q~~~~~-~~~-~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f--~~SGsE 472 (719)
.++||.+|.....-|+. ..|.|.+|+.+ +++... +.. ......+....+++.+....+.. .-++++| +++|++
T Consensus 30 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~ 109 (412)
T 1yaa_A 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTG 109 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHh
Confidence 78899887654444442 15899999998 775311 110 01112233334444443211100 0258999 999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++++ +.+. .| .+|+....+||+....+.. .|..
T Consensus 110 a~~~~~~~~-~~~~--~g----------------d~Vl~~~p~~~~~~~~~~~-~g~~---------------------- 147 (412)
T 1yaa_A 110 ALHISAKFF-SKFF--PD----------------KLVYLSKPTWANHMAIFEN-QGLK---------------------- 147 (412)
T ss_dssp HHHHHHHHH-HHHC--TT----------------CCEEEEESCCTTHHHHHHT-TTCC----------------------
T ss_pred HHHHHHHHH-HHhC--CC----------------CEEEEeCCCCccHHHHHHH-cCce----------------------
Confidence 999998877 4332 22 3799999999985433221 1110
Q ss_pred ccccCcceeecC--cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 553 VFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 553 ~~~~~~~~~~~~--P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++. ++.+ .-| .+.+++.+.+ .+...+.+++... +
T Consensus 148 ------~~~v~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~~~~~~p-~ 186 (412)
T 1yaa_A 148 ------TATYPYWANETK---------------------SLD--------LNGFLNAIQK-----APEGSIFVLHSCA-H 186 (412)
T ss_dssp ------EEEEECEETTTT---------------------EEC--------HHHHHHHHHH-----SCTTCEEEEECSS-C
T ss_pred ------EEEEeeecCCCC---------------------ccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-C
Confidence 001111 0000 001 2556677753 1222334443433 5
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC---cccccccc-CCCc----ce--eeehhccCC-Cccchh
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLL-GCVP----DI--ACYGKLLTG-GVIPLA 699 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG---~~~a~e~~-gv~P----DI--vtlgK~Lgg-G~~Pls 699 (719)
...|. ..+.+.+++|.++|++||+++|+||++++|+..| ..+....+ ...+ ++ .+++|.+|. | +++|
T Consensus 187 nPtG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lriG 264 (412)
T 1yaa_A 187 NPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ERVG 264 (412)
T ss_dssp TTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GCEE
T ss_pred CCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcC-Ccce
Confidence 65665 4578999999999999999999999999997665 33333221 1233 33 378999998 8 7999
Q ss_pred eeE--e-----CHH----HHhhh
Q 005009 700 ATL--A-----TNA----VFDSF 711 (719)
Q Consensus 700 avl--~-----~~~----i~~~~ 711 (719)
+++ + +++ +.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~l 287 (412)
T 1yaa_A 265 CFHLALTKQAQNKTIKPAVTSQL 287 (412)
T ss_dssp EEEEECCSCTTHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHH
Confidence 988 7 565 66554
No 159
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.12 E-value=6.6e-10 Score=120.31 Aligned_cols=209 Identities=10% Similarity=-0.017 Sum_probs=134.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||..+. ++. +|+|.+|+.++++.........+ ..+...++.++|+++++.. .+.++|+++|++|+
T Consensus 28 ~~ld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 99 (406)
T 3cai_A 28 VHFDAPAG------MLI-PDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNAD-PGGVVLGADRAVLL 99 (406)
T ss_dssp EECBGGGC------CCC-CHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEEeCCCc------CCC-CHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCChHHHH
Confidence 78887653 367 99999999999986432110111 1345678888999888743 35899999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc---cCCCCCCCCCCCCCccCCCcccCCC
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl---t~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+.+++...+.. . ...+||....+||+.......+ .|..
T Consensus 100 ~~~~~~l~~~~--~----------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~--------------------- 140 (406)
T 3cai_A 100 SLLAEASSSRA--G----------------LGYEVIVSRLDDEANIAPWLRAAHRYGAK--------------------- 140 (406)
T ss_dssp HHHHHHTGGGG--B----------------TTCEEEEETTSCGGGTHHHHHHHHHHBCE---------------------
T ss_pred HHHHHHHhhcc--C----------------CCCEEEEcCCccHHHHHHHHHHHHhcCCe---------------------
Confidence 99887541111 1 1247888888888743322221 1110
Q ss_pred cccccCcceeecCc-chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 552 TVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 552 ~~~~~~~~~~~~~P-~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.. +.. ..| .+.|++.+. .++.+|+++++ +
T Consensus 141 -------v~~v~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~ 175 (406)
T 3cai_A 141 -------VKWAEVDIETG-----------ELP------------------TWQWESLIS--------KSTRLVAVNSA-S 175 (406)
T ss_dssp -------EEEECCCTTTC-----------CCC------------------GGGHHHHCC--------TTEEEEEEESB-C
T ss_pred -------EEEEecCcccC-----------CcC------------------HHHHHHHhC--------CCceEEEEeCC-c
Confidence 0011111 000 001 134555553 35789999997 8
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchh-eeEeCHHH
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLA-ATLATNAV 707 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Pls-avl~~~~i 707 (719)
+..|.+.+ +++|.++|++||+++|+||+|+ +|... +....++ +|+++ ++|.+|.+ +| ++++++++
T Consensus 176 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~g~~---~G~~~~~~~~~ 243 (406)
T 3cai_A 176 GTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--ADVVTVNAHAWGGPP---IGAMVFRDPSV 243 (406)
T ss_dssp TTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CSEEEEEGGGGTSCS---CEEEEESCHHH
T ss_pred CCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CCEEEeehhhhcCCC---cCeEEEEehHH
Confidence 99998887 8999999999999999999996 33221 3333344 78875 57976533 88 89999998
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
++.+.
T Consensus 244 ~~~l~ 248 (406)
T 3cai_A 244 MNSFG 248 (406)
T ss_dssp HHTSC
T ss_pred HhhcC
Confidence 87664
No 160
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.10 E-value=1.5e-10 Score=125.51 Aligned_cols=203 Identities=16% Similarity=0.022 Sum_probs=128.5
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeE-EEeCChHHHHHHHHHHHHHHhhcccc
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv-~f~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
++|++ .+.+.+++.+++.+...........+...++.++|++..+.. .+.+ ++++||++|++.+++... .
T Consensus 14 ~~~p~-p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~~~~~~s~t~al~~~~~~l~-----~-- 84 (416)
T 3isl_A 14 IMTPG-PVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTK-NRWAYPIDGTSRAGIEAVLASVI-----E-- 84 (416)
T ss_dssp ECSSS-SCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCC-CSEEEEEESCHHHHHHHHHHHHC-----C--
T ss_pred eecCC-CcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCC-CCcEEEecCcHHHHHHHHHHHhc-----C--
Confidence 35665 555555555555542221111111345678889999988754 2444 489999999999998761 1
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCccc-cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhh
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~g-alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (719)
...+||....+|||.... .+...|.. ...++.+...
T Consensus 85 --------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~- 121 (416)
T 3isl_A 85 --------------PEDDVLIPIYGRFGYLLTEIAERYGAN----------------------------VHMLECEWGT- 121 (416)
T ss_dssp --------------TTCEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC-
T ss_pred --------------CCCEEEEecCCcccHHHHHHHHhcCCe----------------------------eEEEecCCCC-
Confidence 124899999999984322 11111110 0111111000
Q ss_pred hcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHH
Q 005009 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (719)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~L 649 (719)
..| .+.+++.+.+ .++.+|+++.. ++..|...+ +++|.++
T Consensus 122 ----------~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l 161 (416)
T 3isl_A 122 ----------VFD------------------PEDIIREIKK-------VKPKIVAMVHG-ETSTGRIHP----LKAIGEA 161 (416)
T ss_dssp ----------CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CHHHHHH
T ss_pred ----------CCC------------------HHHHHHHHhh-------CCCcEEEEEcc-CCCCceecC----HHHHHHH
Confidence 001 2567777752 24578899987 899998887 8999999
Q ss_pred HHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHhhhc
Q 005009 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 650 c~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|++||+++|+||+|+ +|.. .+..+.+ .+|+++ +.|.|+|+ .++|++++++++++.+.
T Consensus 162 ~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~l~g~-~g~g~~~~~~~~~~~~~ 220 (416)
T 3isl_A 162 CRTEDALFIVDAVAT-IGGC--EVKVDEW--KIDAAIGGTQKCLSVP-SGMAPITYNERVADVIA 220 (416)
T ss_dssp HHHTTCEEEEECTTT-TTTS--CCCTTTT--TCSEEECCSSSTTCCC-SSEEEEEECHHHHHHHH
T ss_pred HHHcCCEEEEECCcc-ccCC--Ccchhhc--CCCEEEecCccccCCC-CCeEEEEECHHHHHHhh
Confidence 999999999999996 3322 1222223 367775 45998887 57899999999987765
No 161
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.10 E-value=1e-10 Score=123.25 Aligned_cols=193 Identities=15% Similarity=0.054 Sum_probs=129.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
+|+|.+|+.+++.. +.. ....+...++.+.|++.++.+ ..+.++|+++|++|++.+++.+.
T Consensus 12 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-------------- 73 (353)
T 2yrr_A 12 PERVQKALLRPMRG--HLD--PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-------------- 73 (353)
T ss_dssp CHHHHGGGGSCCCC--TTC--HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS--------------
T ss_pred CHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc--------------
Confidence 89999999887764 210 011344678899999987642 12579999999999999998761
Q ss_pred CCCccccCcceEEEEEeCCcccCcccc-ccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~ga-lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (719)
+ .+|+..+.+||+..... ....|.. ...++.+..+
T Consensus 74 --------~-d~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------- 109 (353)
T 2yrr_A 74 --------R-GPVLVLVNGAFSQRVAEMAALHGLD----------------------------PEVLDFPPGE------- 109 (353)
T ss_dssp --------C-CCEEEEECSHHHHHHHHHHHHTTCC----------------------------EEEEECCTTS-------
T ss_pred --------C-CcEEEEcCCCchHHHHHHHHHcCCc----------------------------eEEEeCCCCC-------
Confidence 1 36888999999851111 1111100 0111111100
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi 655 (719)
..| .+.+++.+.+ . ++.+|+++.. +...|.+.+ +++|.++|++||+
T Consensus 110 ----~~d------------------~~~l~~~l~~-----~--~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~ 155 (353)
T 2yrr_A 110 ----PVD------------------PEAVARALKR-----R--RYRMVALVHG-ETSTGVLNP----AEAIGALAKEAGA 155 (353)
T ss_dssp ----CCC------------------HHHHHHHHHH-----S--CCSEEEEESE-ETTTTEECC----HHHHHHHHHHHTC
T ss_pred ----CCC------------------HHHHHHHHHh-----C--CCCEEEEEcc-CCCcceecC----HHHHHHHHHHcCC
Confidence 011 2556777753 1 4567888887 888898877 8899999999999
Q ss_pred cEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 656 lLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|+||++ ++|++. +....+ .+|++++ +|.++|+ ..+|++++++++++.+.
T Consensus 156 ~li~D~a~-~~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~l~ 208 (353)
T 2yrr_A 156 LFFLDAVT-TLGMLP--FSMRAM--GVDYAFTGSQKCLSAP-PGLAPIAASLEARKAFT 208 (353)
T ss_dssp EEEEECTT-TTTTSC--CCHHHH--TCSEEECCTTSTTCCC-SSCEEEEECHHHHHHCC
T ss_pred eEEEEcCc-cccccc--cccccc--CceEEEecCcccccCC-CceEEEEECHHHHHHhc
Confidence 99999999 677653 223333 3688865 6999876 35799999999987664
No 162
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.09 E-value=3.4e-10 Score=125.63 Aligned_cols=196 Identities=11% Similarity=0.018 Sum_probs=118.4
Q ss_pred CCCCHHHHHHHHHhhh-hcccccCC-C--CCCh---HHHHHH-HHHHhccCCCCCCeEEE-eCChHHHHHHHHHHHHHHh
Q 005009 415 ATLQIELARDMGYTAA-RFGHVMFP-E--NVYE---PALECA-ELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKF 485 (719)
Q Consensus 415 H~~hP~V~~Av~~q~~-~~~~~~~~-~--~~~~---~~~~La-e~L~~~~~~~~~~rv~f-~~SGsEA~E~AlKlA~r~~ 485 (719)
+. +|+|++|+.+++. .+.+.... . ...+ ...+++ ++|++.++. +.+.+ ++||++|++.|++.++
T Consensus 56 ~~-~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~---~~~~v~~~sGs~a~~~a~~~~~--- 128 (447)
T 3h7f_A 56 FV-PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA---EFANVQPHSGAQANAAVLHALM--- 128 (447)
T ss_dssp CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHC---
T ss_pred CC-CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC---CceEEEeCCHHHHHHHHHHHhc---
Confidence 45 8999999999885 44332110 0 1112 335677 888888873 55666 9999999999999772
Q ss_pred hccccccccccCCCccccCcceEEEEEeCCcccCc-ccc-ccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeec
Q 005009 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (719)
Q Consensus 486 ~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t-~ga-lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 563 (719)
+.| .+|++...+|++.. .+. +..++.. + ..++
T Consensus 129 --~~G----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~-~---------------------------~~~~ 162 (447)
T 3h7f_A 129 --SPG----------------ERLLGLDLANGGHLTHGMRLNFSGKL-Y---------------------------ENGF 162 (447)
T ss_dssp --CTT----------------CEEEEECGGGTCCGGGTCTTSHHHHS-S---------------------------EEEE
T ss_pred --CCC----------------CEEEecCcccccccchhhhhhhcCCe-e---------------------------EEEE
Confidence 122 37888888877632 221 1121100 0 0111
Q ss_pred Cc---chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCC
Q 005009 564 LP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVD 639 (719)
Q Consensus 564 ~P---~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp 639 (719)
+| +.+ ..| .+.+++.+.+. +..+|++ .|. .+.++
T Consensus 163 ~~~~~~~~-----------~~d------------------~~~l~~~i~~~-------~~~~i~~~~~~-~~~~~----- 200 (447)
T 3h7f_A 163 YGVDPATH-----------LID------------------MDAVRATALEF-------RPKVIIAGWSA-YPRVL----- 200 (447)
T ss_dssp ECCCTTTC-----------SCC------------------HHHHHHHHHHH-------CCSEEEEECSS-CCSCC-----
T ss_pred cCcCcccC-----------CcC------------------HHHHHHHHHhc-------CCeEEEEcCCC-CCCcc-----
Confidence 11 000 011 25566666421 1225555 565 44433
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccc-cCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhc
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVq-TGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++++|+++|++||++||+||+| +|+...|...... . ..|++ +++|+++| .+.|.+++++++.+.+.
T Consensus 201 --~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~-~~di~~~s~sK~l~G--~~gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 201 --DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--P-HADVVSTTVHKTLGG--GRSGLIVGKQQYAKAIN 269 (447)
T ss_dssp --CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--T-TCSEEEEESSGGGCC--CSCEEEEECGGGHHHHH
T ss_pred --CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--C-CCcEEEecCCcCCCC--CCeEEEEECHHHHHHHh
Confidence 6999999999999999999997 5665666533211 1 24776 67999974 35677888888876653
No 163
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.09 E-value=3.1e-10 Score=123.17 Aligned_cols=195 Identities=11% Similarity=-0.064 Sum_probs=108.8
Q ss_pred CCCCCHHHHHHHHHhh-hhcccccC---CCCCChHHHH----HHHHHHhccCCCCCCeE-EEeCChHHHHHHHHHHHHHH
Q 005009 414 DATLQIELARDMGYTA-ARFGHVMF---PENVYEPALE----CAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRK 484 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~-~~~~~~~~---~~~~~~~~~~----Lae~L~~~~~~~~~~rv-~f~~SGsEA~E~AlKlA~r~ 484 (719)
.+. ||+|++|+.+++ +.+..... .........+ +.+++++.++. +.. ++++||++|++.|++.+.
T Consensus 35 ~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~---~~~~i~~~sGt~a~~~~~~~~~-- 108 (417)
T 3n0l_A 35 NFT-LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC---KFANVQPNSGSQANQGVYAALI-- 108 (417)
T ss_dssp CCC-CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHS--
T ss_pred CCC-CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC---CCcceEeccHHHHHHHHHHHhc--
Confidence 356 899999999998 44322110 0011223333 34477777763 333 567899999999998872
Q ss_pred hhccccccccccCCCccccCcceEEEEEeCCcccCccc--cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceee
Q 005009 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG--AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562 (719)
Q Consensus 485 ~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~g--alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 562 (719)
+. ..+|+....+||+.... .+...+. +...+
T Consensus 109 ---~~----------------gd~vl~~~~~~~~~~~~~~~~~~~g~----------------------------~~~~~ 141 (417)
T 3n0l_A 109 ---NP----------------GDKILGMDLSHGGHLTHGAKVSSSGK----------------------------MYESC 141 (417)
T ss_dssp ---CT----------------TCEEEEECC----------------C----------------------------CSEEE
T ss_pred ---CC----------------CCEEEecccccccccchhhhhhhhcc----------------------------eeeeE
Confidence 11 24788888888764221 1111110 00011
Q ss_pred cCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCH
Q 005009 563 SLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640 (719)
Q Consensus 563 ~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~ 640 (719)
++| +.+ ..| .+.+++.+.+ .++.+|++. ++..|...+
T Consensus 142 ~~~~~~~~-----------~~d------------------~~~l~~~i~~-------~~~~~v~~~---~~~~G~~~~-- 180 (417)
T 3n0l_A 142 FYGVELDG-----------RID------------------YEKVREIAKK-------EKPKLIVCG---ASAYARVID-- 180 (417)
T ss_dssp EECCCTTS-----------SCC------------------HHHHHHHHHH-------HCCSEEEEC---CSSCCSCCC--
T ss_pred eccCCCCC-----------CcC------------------HHHHHHHHHh-------cCCeEEEEC---CcccCccCC--
Confidence 111 000 011 2567777752 134456643 333577665
Q ss_pred HHHHHHHHHHHhcCCcEEEecccc-CccccCccccccccCC--Ccceeeeh--hccCCCccchheeEeC-HHHHhhh
Q 005009 641 LFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGC--VPDIACYG--KLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 641 ~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv--~PDIvtlg--K~LggG~~Plsavl~~-~~i~~~~ 711 (719)
+++|+++|++||++||+||+|+ |+...|. +.+. ..|+++++ |+++|+ ..|+++++ +++.+.+
T Consensus 181 --l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~~~di~~~s~sK~l~g~--~~G~~~~~~~~~~~~~ 248 (417)
T 3n0l_A 181 --FAKFREIADEIGAYLFADIAHIAGLVVAGE-----HPSPFPYAHVVSSTTHKTLRGP--RGGIIMTNDEELAKKI 248 (417)
T ss_dssp --HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-----SCCCTTTCSEEEEESSTTTCSC--SCEEEEESCHHHHHHH
T ss_pred --HHHHHHHHHHcCCEEEEECccchhhhhccc-----CCCccccceEEEeeCccccCCC--CeeEEEECCHHHHHHH
Confidence 9999999999999999999984 3322222 1111 35898777 999665 36888888 6877665
No 164
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.08 E-value=1.4e-10 Score=125.58 Aligned_cols=192 Identities=12% Similarity=0.041 Sum_probs=117.5
Q ss_pred CCCCCCC----HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhc
Q 005009 412 GPDATLQ----IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487 (719)
Q Consensus 412 ~lGH~~h----P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~ 487 (719)
+++++ + +++.+++.+++....+ ....+...+|.+.|+++++. ++++|++||++|++.|++.+ +.
T Consensus 26 ~l~~~-~p~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~~---~~~i~~~~gt~al~~~l~~~-~~--- 93 (391)
T 3dr4_A 26 RISVA-APRLDGNERDYVLECMDTTWI----SSVGRFIVEFEKAFADYCGV---KHAIACNNGTTALHLALVAM-GI--- 93 (391)
T ss_dssp --CCC-CCCCCSSHHHHHHHHHHHTCC----SSCSHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-TC---
T ss_pred eeccC-CCCCCHHHHHHHHHHHHcCCc----cCCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-CC---
Confidence 45555 4 4566666666654221 12467888999999999873 58999999999999999987 11
Q ss_pred cccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-c
Q 005009 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-E 566 (719)
Q Consensus 488 ~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~ 566 (719)
....+|+....+||+....... .|.. ...++.. +
T Consensus 94 ----------------~~gd~vl~~~~~~~~~~~~~~~-~g~~----------------------------~~~~~~~~~ 128 (391)
T 3dr4_A 94 ----------------GPGDEVIVPSLTYIASANSVTY-CGAT----------------------------PVLVDNDPR 128 (391)
T ss_dssp ----------------CTTCEEEEESSSCTHHHHHHHH-TTCE----------------------------EEEECBCTT
T ss_pred ----------------CCcCEEEECCCchHHHHHHHHH-CCCE----------------------------EEEEecCcc
Confidence 1124789999999885443322 2110 0011110 0
Q ss_pred hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHH
Q 005009 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (719)
Q Consensus 567 ~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~L 646 (719)
.+. -| .+.+++.+. .++.+|++... .|...+ +++|
T Consensus 129 ~~~-----------~d------------------~~~l~~~~~--------~~~~~v~~~n~----tG~~~~----~~~i 163 (391)
T 3dr4_A 129 TFN-----------LD------------------AAKLEALIT--------PRTKAIMPVHL----YGQICD----MDPI 163 (391)
T ss_dssp TCS-----------BC------------------GGGSGGGCC--------TTEEEECCBCG----GGCCCC----HHHH
T ss_pred ccC-----------cC------------------HHHHHHhcC--------CCceEEEEECC----CCChhh----HHHH
Confidence 000 01 122333332 35677775443 345544 8999
Q ss_pred HHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh----hccCCCccchheeEeCH-HHHhhh
Q 005009 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATN-AVFDSF 711 (719)
Q Consensus 647 r~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~~-~i~~~~ 711 (719)
.++|++||+++|+||+|+ + |..+.....+..+|+++++ |+|++|. .|++++++ ++.+.+
T Consensus 164 ~~l~~~~~~~li~D~a~~-~---g~~~~~~~~~~~~di~~~S~s~~K~l~~g~--gg~~~~~~~~~~~~~ 227 (391)
T 3dr4_A 164 LEVARRHNLLVIEDAAEA-V---GATYRGKKSGSLGDCATFSFFGNAIITTGE--GGMITTNDDDLAAKM 227 (391)
T ss_dssp HHHHHHTTCEEEEECTTC-T---TCEETTEETTSSSSEEEEECBTTSSSCCBS--CEEEEESCHHHHHHH
T ss_pred HHHHHHcCCEEEEECccc-c---cceECCeeecccCCEEEEECCCCCcCCcCC--eEEEEECCHHHHHHH
Confidence 999999999999999996 2 2222223445557999888 9998763 66666654 455443
No 165
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.08 E-value=3.8e-11 Score=131.35 Aligned_cols=232 Identities=11% Similarity=-0.016 Sum_probs=137.5
Q ss_pred eeeeccccccccCCCCCCCHH---------HHHHHH--HhhhhcccccCCCC-C-ChHHHHHHHHHHhccCCCCCCeEEE
Q 005009 400 QQFDACASWWTQGPDATLQIE---------LARDMG--YTAARFGHVMFPEN-V-YEPALECAELLLQGVGKGWASRAYF 466 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~---------V~~Av~--~q~~~~~~~~~~~~-~-~~~~~~Lae~L~~~~~~~~~~rv~f 466 (719)
+|.|+.+.....+||++ +|. |.+|+. +.+. .... ...+ . ..-..+|.+.|+++++-. .+.+++
T Consensus 17 ~~~~~~~~~~~i~l~~g-~p~~~~~~~~~~v~~a~~~~~~~~-~~~~-~~~Yp~~~~g~~~lr~~ia~~~~~~-~~~i~~ 92 (423)
T 3ez1_A 17 AYEAFKARGLNLNMQRG-QPADADFDLSNGLLTVLGAEDVRM-DGLD-LRNYPGGVAGLPSARALFAGYLDVK-AENVLV 92 (423)
T ss_dssp HHHHHHHHTCCEESCCC-CCCHHHHHTTGGGGGSCCGGGCEE-TTEE-TTSSCSCTTCCHHHHHHHHHHTTSC-GGGEEE
T ss_pred HHHHhhcCCceEecCCC-CCChHhCCCcHHHHHHHhhhHHhh-cchh-hhCCCCCCCChHHHHHHHHHHhCCC-hhhEEE
Confidence 56666666666667666 555 444443 2222 1110 1122 1 222457888888877533 368999
Q ss_pred eCChHHHHH--HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCC
Q 005009 467 SDNGSTAIE--IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (719)
Q Consensus 467 ~~SGsEA~E--~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~ 544 (719)
+++|++|+. .+++... .. ..|. ..+-.....+|+....+||+....... .|.
T Consensus 93 t~G~~~al~~~~~~~~l~-~~--~~g~-------~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~--------------- 146 (423)
T 3ez1_A 93 WNNSSLELQGLVLTFALL-HG--VRGS-------TGPWLSQTPKMIVTVPGYDRHFLLLQT-LGF--------------- 146 (423)
T ss_dssp CSSCHHHHHHHHHHHHHH-TC--CTTC-------SSCGGGGCCEEEEEESCCHHHHHHHHH-HTC---------------
T ss_pred eCCcHHHHHHHHHHHHHh-cc--CCCc-------cccccCCCCEEEEcCCCcHHHHHHHHH-cCC---------------
Confidence 999999997 7877662 10 0110 000000025799999999885433222 111
Q ss_pred CcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 005009 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (719)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI 624 (719)
..+++|. .+ + .-| .+.+++.+.+ ..++.+|+
T Consensus 147 ---------------~~~~v~~--------------~~-~-----g~d--------~~~l~~~l~~------~~~~~~v~ 177 (423)
T 3ez1_A 147 ---------------ELLTVDM--------------QS-D-----GPD--------VDAVERLAGT------DPSVKGIL 177 (423)
T ss_dssp ---------------EEEEEEE--------------ET-T-----EEC--------HHHHHHHHHS------CTTEEEEE
T ss_pred ---------------EEEeccC--------------CC-C-----CCC--------HHHHHHHHhh------CCCceEEE
Confidence 0111110 00 0 001 3567777752 24688888
Q ss_pred EccccccCCccccCCHHHHHHHHHHH-HhcCCcEEEeccccCccccC-------ccccc----cccCCCcceeeehhccC
Q 005009 625 IEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGFWRLG-------VETTA----DLLGCVPDIACYGKLLT 692 (719)
Q Consensus 625 vEPViqg~gG~~~pp~~fl~~Lr~Lc-~k~gilLI~DEVqTGfGRtG-------~~~a~----e~~gv~PDIvtlgK~Lg 692 (719)
++|..+...|.+. +.+.+++|.++| ++||+++|+||+++.+...+ .++.. +..+....+.+++|.+.
T Consensus 178 ~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 256 (423)
T 3ez1_A 178 FVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITF 256 (423)
T ss_dssp ECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSC
T ss_pred ECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhcc
Confidence 8875466677765 667799999999 99999999999998432222 22322 12333444669999877
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
+| +++|++++++++++.+.
T Consensus 257 ~G-~r~G~~~~~~~~~~~~~ 275 (423)
T 3ez1_A 257 AG-AGLGFVASSEDNIRWLS 275 (423)
T ss_dssp SS-SSCEEEEECHHHHHHHH
T ss_pred CC-cceEEEEeCHHHHHHHH
Confidence 78 79999999999888764
No 166
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.07 E-value=6.3e-10 Score=119.95 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=125.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.|++.+|+.++++...+ ...+...+|.++|+++++. +.+++++||++|++.+++.+ + . +
T Consensus 19 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~al~~~~~~~-~-~--~--------- 77 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI-----TTGPKNQELEAAFCRLTGN---QYAVAVSSATAGMHIALMAL-G-I--G--------- 77 (393)
T ss_dssp CHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T-C--C---------
T ss_pred CHHHHHHHHHHHhcCCc-----CCChHHHHHHHHHHHHhCC---CcEEEecChHHHHHHHHHHc-C-C--C---------
Confidence 68999999999877432 1346778999999999873 58999999999999999876 2 1 1
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~ 576 (719)
...+|+....+|++.. .++...|.. ...++.. +.+
T Consensus 78 -------~gd~Vl~~~~~~~~~~-~~~~~~g~~----------------------------~~~v~~~~~~~-------- 113 (393)
T 1mdo_A 78 -------EGDEVITPSMTWVSTL-NMIVLLGAN----------------------------PVMVDVDRDTL-------- 113 (393)
T ss_dssp -------TTCEEEEESSSCHHHH-HHHHHTTCE----------------------------EEEECBCTTTC--------
T ss_pred -------CCCEEEeCCCccHhHH-HHHHHCCCE----------------------------EEEEeccCCcC--------
Confidence 1247888888888843 333322211 0011110 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+. .++.+|++.+. .| ...+ +++|.++|++||++
T Consensus 114 ---~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~G---~~~~----~~~i~~l~~~~~~~ 156 (393)
T 1mdo_A 114 ---MVT------------------PEHIEAAIT--------PQTKAIIPVHY-AG---APAD----LDAIYALGERYGIP 156 (393)
T ss_dssp ---CBC------------------HHHHHHHCC--------TTEEEECCBCG-GG---CCCC----HHHHHHHHHHHTCC
T ss_pred ---CCC------------------HHHHHHhcC--------CCceEEEEeCC-CC---CcCC----HHHHHHHHHHcCCe
Confidence 011 245666664 25788888875 44 4443 89999999999999
Q ss_pred EEEecccc-CccccCccccccccCCCcceeeeh----hccCCCccchheeEeC-HHHHhhh
Q 005009 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 657 LI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~~ 711 (719)
+|+||+|+ |+...|+. ++. +|+++++ |.++|| .+|+++++ +++++.+
T Consensus 157 li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l 209 (393)
T 1mdo_A 157 VIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKL 209 (393)
T ss_dssp BCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHH
T ss_pred EEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHH
Confidence 99999998 54444543 233 8999887 999887 36778886 7777655
No 167
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.07 E-value=5.9e-10 Score=122.02 Aligned_cols=222 Identities=10% Similarity=0.024 Sum_probs=125.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||..+. ++. +|++++|+.+++..........+ ..+...++.++|+++++.+ .+.++|+++|+||+
T Consensus 20 ~~Ld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 91 (432)
T 3a9z_A 20 VYMDYNAT------TPL-EPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGK-PQDIIFTSGGTESN 91 (432)
T ss_dssp EECBTTTC------CCC-CHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEeeCCcc------CCC-CHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEeCChHHHH
Confidence 78887653 377 99999999999876321111111 1123468888999887743 35899999999999
Q ss_pred HHHHHHHHHHhhc---cccccccccCCCccccCcceEEEEEeCCcccCc-cccccccCCCCCCCCCCCCCccCCCcccCC
Q 005009 475 EIALKMAFRKFSF---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 475 E~AlKlA~r~~~~---~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t-~galslt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
+.+++.+.+.+.. +.| .+|++...+||+.. ..+...++.+.. .+|.. +.
T Consensus 92 ~~~~~~~~~~~~~~~~~~g----------------d~vl~~~p~y~~~~~i~~~~~~h~s~~-----~~~~~----~~-- 144 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTLQG----------------RTVDQISPEEGTRPHFITCTVEHDSIR-----LPLEH----LV-- 144 (432)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------------CCCEEEEETTCCHHHH-----HHHHH----HH--
T ss_pred HHHHHHHHhhhhhccccCC----------------ccccccccccccCCeEEEecCcchhHH-----HHHHH----HH--
Confidence 9999988433321 122 37889999999852 222111111100 00000 00
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...|...+.+| ....+. .-| .+.|++.+. .++.+|++++. +
T Consensus 145 ----~~~g~~v~~v~--------------~~~~~~----~~d--------~~~l~~~i~--------~~~~~v~~~~~-~ 185 (432)
T 3a9z_A 145 ----EDQVAEVTFVP--------------VSKVNG----QVE--------VEDILAAVR--------PTTCLVTIMLA-N 185 (432)
T ss_dssp ----HTTSCEEEEEC--------------CCTTTS----SCC--------HHHHHHTCC--------TTEEEEECCSB-C
T ss_pred ----HhcCcEEEEEe--------------cCcccC----CcC--------HHHHHHhcc--------CCceEEEEECc-c
Confidence 00011111111 000000 001 245555543 35789999997 8
Q ss_pred cCCccccCCHHHHHHHHHHHHhcC----------CcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccch
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRK----------IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPL 698 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~g----------ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Pl 698 (719)
...|.+.+ +++|.++|++|| +++|+||++ ++|++. +... ...+|++++ +|.+ | ..+
T Consensus 186 nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~--~~~~--~~~~d~~~~s~~K~~--g-~~~ 253 (432)
T 3a9z_A 186 NETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRR--VDVE--DLGVDFLTIVGHKFY--G-PRI 253 (432)
T ss_dssp TTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSC--CCHH--HHCCSEEEEEGGGTT--C-CSC
T ss_pred cCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchh-hhCCcc--cChh--hcCCCEEEEehhHhc--C-Ccc
Confidence 88999887 789999999999 999999999 566542 2221 235888865 9976 3 248
Q ss_pred heeEeCHHH
Q 005009 699 AATLATNAV 707 (719)
Q Consensus 699 savl~~~~i 707 (719)
|++++++++
T Consensus 254 G~~~~~~~~ 262 (432)
T 3a9z_A 254 GALYVRGVG 262 (432)
T ss_dssp EEEEETTBT
T ss_pred eEEEEcccc
Confidence 899999875
No 168
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.07 E-value=7.6e-10 Score=119.64 Aligned_cols=92 Identities=5% Similarity=-0.105 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.+++.+.+ .++++|++.|... |... .+++|+++|++||++||+||+|+ +|+++.... ..++
T Consensus 153 ~~l~~~i~~-------~~~~~v~~~~~~~---~~~~----~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~--~~~~~ 215 (405)
T 2vi8_A 153 DDVREKARL-------HRPKLIVAAAAAY---PRII----DFAKFREIADEVGAYLMVDMAHI-AGLVAAGLH--PNPVP 215 (405)
T ss_dssp HHHHHHHHH-------HCCSEEEECCSSC---CSCC----CHHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS--CCSTT
T ss_pred HHHHHHHHh-------cCCeEEEEeCCCC---CccC----CHHHHHHHHHHcCCEEEEEcccc-ccccccCcC--CCccc
Confidence 456666652 1245677754323 3222 28999999999999999999998 666654211 1222
Q ss_pred Cccee--eehhccCCCccchheeEeCHHHHhhhc
Q 005009 681 VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 681 ~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
.+|++ +++|.++|+. . |++++++++++.+.
T Consensus 216 ~~di~~~s~sK~~~g~~-g-G~~~~~~~~~~~l~ 247 (405)
T 2vi8_A 216 YAHFVTTTTHKTLRGPR-G-GMILCQEQFAKQID 247 (405)
T ss_dssp TCSEEEEESSSTTCCCS-C-EEEEECHHHHHHHH
T ss_pred cCCEEEEeccccCCCCC-C-eEEEEcHHHHHHHH
Confidence 58987 7899998652 3 88999988887653
No 169
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.07 E-value=2.8e-10 Score=126.61 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=143.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CC--CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FP--ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~--~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||. +++|+. ++.+.+++.++++.+.... +. ....+...++.++|+++.+.. .+.++|++++++|
T Consensus 69 iyld~------~~~g~~-p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a 140 (465)
T 3e9k_A 69 IYFLG------NSLGLQ-PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGAN-EKEIALMNALTVN 140 (465)
T ss_dssp EECBT------TTSCCE-ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCC-GGGEEECSCHHHH
T ss_pred EEecC------CccCCC-hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCC-cCCEEEECCHHHH
Confidence 68884 468998 8999999998887654221 10 012234466788888877743 3689999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..+++... +.| ..+.+||+...+||+......+..... + ..+. ..
T Consensus 141 l~~~~~~~~-----~~~-------------~~~~~Vl~~~~~~~s~~~~~~~~~~~~---G---------~~~~----~~ 186 (465)
T 3e9k_A 141 LHLLMLSFF-----KPT-------------PKRYKILLEAKAFPSDHYAIESQLQLH---G---------LNIE----ES 186 (465)
T ss_dssp HHHHHHHHC-----CCC-------------SSSCEEEEETTCCHHHHHHHHHHHHHT---T---------CCHH----HH
T ss_pred HHHHHHHhc-----ccc-------------CCCCEEEEcCCcCCchHHHHHHHHHHc---C---------Ccce----ee
Confidence 999998772 111 335689999999998655433221100 0 0000 00
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
.....+.++.+. -| .+.+++.+++ +.+++++|+++.+ +...
T Consensus 187 ----~v~~~~~~~~~~-----------~d------------------~~~l~~~i~~-----~~~~~~lv~~~~~-~n~t 227 (465)
T 3e9k_A 187 ----MRMIKPREGEET-----------LR------------------IEDILEVIEK-----EGDSIAVILFSGV-HFYT 227 (465)
T ss_dssp ----EEEECCCTTCSS-----------CC------------------HHHHHHHHHH-----HGGGEEEEEEESB-CTTT
T ss_pred ----eEEEecCCCCCc-----------cC------------------HHHHHHHHHh-----cCCCeEEEEEeCc-ccCc
Confidence 000011111000 01 2566777763 2247899999998 9999
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHhhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
|.+.+ +++|.++|++||+++|+|++|+ +|... +....+ ..|+++ +.|.+.||...+|++.+++++.+.+
T Consensus 228 G~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~--~~~~~~--~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~ 298 (465)
T 3e9k_A 228 GQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE--LYLHDW--GVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTI 298 (465)
T ss_dssp CBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH--TCCEEEECSSSTTCCCTTCCCEEEECGGGTTTS
T ss_pred ceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--Cchhhc--CCCEEEECcccccccCCCceEEEEEcHHHHhhc
Confidence 99987 8999999999999999999996 33221 222223 357764 6699976645689999999987665
Q ss_pred c
Q 005009 712 V 712 (719)
Q Consensus 712 ~ 712 (719)
.
T Consensus 299 ~ 299 (465)
T 3e9k_A 299 K 299 (465)
T ss_dssp C
T ss_pred C
Confidence 4
No 170
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.05 E-value=2.6e-10 Score=123.05 Aligned_cols=212 Identities=13% Similarity=0.002 Sum_probs=127.8
Q ss_pred EEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC-----CCCChHHHHHHHHHHhccCCCCCCe
Q 005009 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP-----ENVYEPALECAELLLQGVGKGWASR 463 (719)
Q Consensus 389 l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~-----~~~~~~~~~Lae~L~~~~~~~~~~r 463 (719)
..+.++. .|||+.+ .+.. +|++.+|+.+++.+....... ....+...++.++|++..+.. .+.
T Consensus 15 ~~~~~~~----iyld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~ 82 (400)
T 3vax_A 15 VPRGSHM----TYLDAAA------TTRV-DQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE-PDE 82 (400)
T ss_dssp -----------CCCCCCC------CSSS-CHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC-GGG
T ss_pred CcccCCc----EEecCCC------CCCC-CHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC-CCc
Confidence 3444555 7999765 2467 999999999998753111000 011344678888999888743 358
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcce-EEEEEeCCcccCccccccccCCCCCCCCCCCCCcc
Q 005009 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL-KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (719)
Q Consensus 464 v~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~-kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~ 542 (719)
++|+++|++|++.+++.+. .+..+. .. .||.....|++.. .++...... +.
T Consensus 83 v~~~~g~t~al~~~~~~l~-~~~~~~----------------gd~~Vl~~~~~~~~~~-~~~~~~~~~---g~------- 134 (400)
T 3vax_A 83 LIFTSGATESNNIALLGLA-PYGERT----------------GRRHIITSAIEHKAVL-EPLEHLAGR---GF------- 134 (400)
T ss_dssp EEEESCHHHHHHHHHHTTH-HHHHHH----------------TCCEEEEETTSCHHHH-HHHHHHHTT---TC-------
T ss_pred EEEeCCHHHHHHHHHHHHH-HhhccC----------------CCCEEEECccccHhHH-HHHHHHHhc---CC-------
Confidence 9999999999999999873 232221 13 5666666555532 222211000 00
Q ss_pred CCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 005009 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (719)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA 622 (719)
....++....+ ..| .+.+++.+. .+..+
T Consensus 135 ---------------~~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~ 162 (400)
T 3vax_A 135 ---------------EVDFLTPGPSG-----------RIS------------------VEGVMERLR--------PDTLL 162 (400)
T ss_dssp ---------------EEEEECCCTTC-----------CCC------------------HHHHHTTCC--------TTEEE
T ss_pred ---------------eEEEEccCCCC-----------CcC------------------HHHHHHhcC--------CCceE
Confidence 00111111000 001 244555443 36789
Q ss_pred EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchhe
Q 005009 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAA 700 (719)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsa 700 (719)
|++++. ++..|.+.+ +++|.++|++||+++|+||+++ +|... ....+. +|+++++ | +.|+ .++|+
T Consensus 163 v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~K-~~g~-~g~g~ 229 (400)
T 3vax_A 163 VSLMHV-NNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGHK-IGAP-KGVGA 229 (400)
T ss_dssp EECCSB-CTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETGG-GTSC-SSCEE
T ss_pred EEEECC-CCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHHH-hCCC-CceEE
Confidence 999997 999998887 8999999999999999999996 43321 122234 8998766 9 5443 35788
Q ss_pred eE-eCH
Q 005009 701 TL-ATN 705 (719)
Q Consensus 701 vl-~~~ 705 (719)
++ +++
T Consensus 230 ~~~~~~ 235 (400)
T 3vax_A 230 LVTRRR 235 (400)
T ss_dssp EEECBC
T ss_pred EEEecc
Confidence 88 776
No 171
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.05 E-value=1.2e-09 Score=118.81 Aligned_cols=191 Identities=12% Similarity=0.053 Sum_probs=125.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.|++.+++.+.++.. +.. ...+...+|.++|+++++ .+.++|++||++|++.+++.+ + ..
T Consensus 11 ~~~v~~a~~~~~~~~-~~~---~~g~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~~~~l-~---~~--------- 70 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIA---PLGEFVNRFEQSVKDYSK---SENALALNSATAALHLALRVA-G---VK--------- 70 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTS---CTTHHHHHHHHHHHHHHC---CSEEEEESCHHHHHHHHHHHT-T---CC---------
T ss_pred CHHHHHHHHHHHHcC-Ccc---CCChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHc-C---CC---------
Confidence 467888888877652 211 113557889999999887 378999999999999999986 1 01
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
...+|+....+||+...... ..|.. ...++..+.+
T Consensus 71 -------~gd~Vl~~~~~~~~~~~~~~-~~g~~----------------------------~~~v~~~~~~--------- 105 (394)
T 1o69_A 71 -------QDDIVLASSFTFIASVAPIC-YLKAK----------------------------PVFIDCDETY--------- 105 (394)
T ss_dssp -------TTCEEEEESSSCGGGTHHHH-HTTCE----------------------------EEEECBCTTS---------
T ss_pred -------CCCEEEECCCccHHHHHHHH-HcCCE----------------------------EEEEEeCCCC---------
Confidence 12478999999888543322 22110 0011111000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
..| .+.+++.+.+ .++++.+|++++. .| .. ..+++|.++|++||+++
T Consensus 106 --~~d------------------~~~l~~~i~~-----~~~~~~~v~~~~~-~G---~~----~~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 106 --NID------------------VDLLKLAIKE-----CEKKPKALILTHL-YG---NA----AKMDEIVEICKENDIVL 152 (394)
T ss_dssp --SBC------------------HHHHHHHHHH-----CSSCCCEEEEECG-GG---CC----CCHHHHHHHHHHTTCEE
T ss_pred --CcC------------------HHHHHHHHhc-----ccCCceEEEEECC-CC---Ch----hhHHHHHHHHHHcCCEE
Confidence 001 2556677763 1235678888885 55 33 34999999999999999
Q ss_pred EEecccc-CccccCccccccccCCCcceeee--hhccCCCccchheeEeC-HHHHhhh
Q 005009 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 658 I~DEVqT-GfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~-~~i~~~~ 711 (719)
|+||+|+ |+...|..+.. ++ ..|+.++ +|+++++ -+|+++++ +++++.+
T Consensus 153 i~Dea~~~g~~~~~~~~~~--~~-~~~~~s~s~~K~l~~~--~~G~~~~~~~~l~~~l 205 (394)
T 1o69_A 153 IEDAAEALGSFYKNKALGT--FG-EFGVYSYNGNKIITTS--GGGMLIGKNKEKIEKA 205 (394)
T ss_dssp EEECTTCTTCEETTEETTS--SS-SEEEEECCTTSSSCCS--SCEEEEESCHHHHHHH
T ss_pred EEECcCcccceeCCccccc--cc-CcEEEEEeCCccCCCC--CceEEEECCHHHHHHH
Confidence 9999998 77665643211 11 4788888 7999865 37889995 7877665
No 172
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.04 E-value=3.1e-10 Score=122.32 Aligned_cols=193 Identities=12% Similarity=0.069 Sum_probs=126.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCC-eEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~-rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
+|++.+|+.+++.. +.. ........++.++|++.++.. .+ .++++++|++|++.+++.+. ..
T Consensus 30 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~al~~~~~~~~-----~~------- 92 (396)
T 2ch1_A 30 SKRVLTAMTNTVLS--NFH--AELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLL-----EE------- 92 (396)
T ss_dssp CHHHHHHTTSCCCC--TTC--HHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHC-----CT-------
T ss_pred CHHHHHHhcccccc--CCC--hhHHHHHHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHhc-----CC-------
Confidence 78999988876532 100 011234678889999988753 24 79999999999999999872 11
Q ss_pred CCCccccCcceEEEEEeCCcccCcc-ccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~-galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (719)
..+|+....+||+... ......|.. ...++.+..+
T Consensus 93 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------- 128 (396)
T 2ch1_A 93 ---------GDRVLIAVNGIWAERAVEMSERYGAD----------------------------VRTIEGPPDR------- 128 (396)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTS-------
T ss_pred ---------CCeEEEEcCCcccHHHHHHHHHcCCc----------------------------eEEecCCCCC-------
Confidence 2479999999998421 111111110 0111111110
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi 655 (719)
..| .+.+++.+.+ .++.+|+++.. +...|.+.+ +++|.++|++||+
T Consensus 129 ----~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~ 174 (396)
T 2ch1_A 129 ----PFS------------------LETLARAIEL-------HQPKCLFLTHG-DSSSGLLQP----LEGVGQICHQHDC 174 (396)
T ss_dssp ----CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTC
T ss_pred ----CCC------------------HHHHHHHHHh-------CCCCEEEEECC-CCCCceecC----HHHHHHHHHHcCC
Confidence 011 2456666652 13567888876 788898877 8999999999999
Q ss_pred cEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhh
Q 005009 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 656 lLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~ 711 (719)
++|+||+++ +|... +..+. ..+|+++.+ |.++++ ..+|++++++++++.+
T Consensus 175 ~li~Dea~~-~g~~~--~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~ 226 (396)
T 2ch1_A 175 LLIVDAVAS-LCGVP--FYMDK--WEIDAVYTGAQKVLGAP-PGITPISISPKALDVI 226 (396)
T ss_dssp EEEEECTTT-BTTBC--CCTTT--TTCCEEECCCC-CCCCC-SSCEEEEECHHHHHHH
T ss_pred EEEEEcccc-ccCCc--cchhh--cCcCEEEEcCCccccCC-CCeEEEEECHHHHHhh
Confidence 999999996 65432 22222 347988766 999886 5678999999888765
No 173
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.02 E-value=3.9e-10 Score=120.06 Aligned_cols=195 Identities=15% Similarity=0.007 Sum_probs=117.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
||+|.+|+++++....+ ...+...+|.++|++..+. +..+|++||++|++.|++.+. ..
T Consensus 28 ~p~v~~ai~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~i~~~~g~~a~~~a~~~~~-~~------------ 86 (359)
T 3pj0_A 28 LTEALQNIDDNLESDIY-----GNGAVIEDFETKIAKILGK---QSAVFFPSGTMAQQIALRIWA-DR------------ 86 (359)
T ss_dssp HHHHTTTSCTTCBCCBT-----TBSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHH-HH------------
T ss_pred CHHHHHHHHhhcccCcc-----cCCHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHH-hc------------
Confidence 46677776664432221 2356778999999998873 556778999999999999873 21
Q ss_pred CCccccCcceEEEEEeCCcccCcccc--c-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGA--M-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~ga--l-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (719)
+...+|.....+|...... + ...|. ..+++|...
T Consensus 87 -------g~~~vvi~~~~~~~~~~~~~~~~~~~g~------------------------------~~~~v~~~~------ 123 (359)
T 3pj0_A 87 -------KENRRVAYHPLSHLEIHEQDGLKELQQI------------------------------TPLLLGTAN------ 123 (359)
T ss_dssp -------HTCCEEEECTTCHHHHSSTTHHHHHHCC------------------------------EEEECSCTT------
T ss_pred -------CCCcEEEEeccceeeehhcchHHHhcCc------------------------------eEEecCCcC------
Confidence 1123666666666533221 1 11111 011111000
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
+ .-| .+.+++. .+++++|++++. +...|-.+.|.+++++|.++|++||
T Consensus 124 -----~---------~~d--------~~~l~~~---------~~~~~~v~~~~p-~n~~~G~~~~~~~l~~l~~~~~~~~ 171 (359)
T 3pj0_A 124 -----Q---------LLT--------IDDIKSL---------REPVSSVLIELP-QREIGGQLPAFEELEKISEYCHEQG 171 (359)
T ss_dssp -----S---------CCC--------HHHHHTC---------SSCCSEEEEESS-BGGGTSBCCCHHHHHHHHHHHHHHT
T ss_pred -----C---------CcC--------HHHHHhc---------cCCceEEEEEec-ccCCCcccCCHHHHHHHHHHHHHcC
Confidence 0 001 1334322 246789999986 6554335568999999999999999
Q ss_pred CcEEEeccccCcc--ccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhc
Q 005009 655 IPVIFDEVFTGFW--RLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 655 ilLI~DEVqTGfG--RtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++||+||++..+. ..|.. ...+.-..|++ +++|+++++ .. +.+++++++++.+.
T Consensus 172 ~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~-~g-g~~~~~~~l~~~~~ 229 (359)
T 3pj0_A 172 ISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGI-AG-AILAGNDDFVQEAK 229 (359)
T ss_dssp CEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCS-SC-EEEEECHHHHHHHH
T ss_pred CEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCc-ce-EEEECCHHHHHHHH
Confidence 9999999885221 11111 11111234766 889999865 22 56788998887764
No 174
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.02 E-value=2.5e-09 Score=117.41 Aligned_cols=189 Identities=10% Similarity=0.040 Sum_probs=122.7
Q ss_pred ChHHHHHHHHHHhccCCCC--------CCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEe
Q 005009 442 YEPALECAELLLQGVGKGW--------ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~--------~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~ 513 (719)
.+....+++.+.+..+... .+.++++++|++|++.+++... .. ..+|+...
T Consensus 81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~----------------gd~Vlv~~ 139 (425)
T 2r2n_A 81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-----NP----------------GDNVLLDE 139 (425)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEES
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-----CC----------------CCEEEEeC
Confidence 3455666777665444321 1489999999999999999871 11 24799999
Q ss_pred CCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCc
Q 005009 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (719)
Q Consensus 514 ~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (719)
.+||+....+ ...|. ..+++|. .. + .-|
T Consensus 140 p~y~~~~~~~-~~~g~------------------------------~~~~v~~--------------~~-~-----~~d- 167 (425)
T 2r2n_A 140 PAYSGTLQSL-HPLGC------------------------------NIINVAS--------------DE-S-----GIV- 167 (425)
T ss_dssp SCCHHHHHHH-GGGTC------------------------------EEEEECE--------------ET-T-----EEC-
T ss_pred CCcHHHHHHH-HHcCC------------------------------EEEEeCc--------------CC-C-----CCC-
Confidence 9999854332 22211 0111110 00 0 001
Q ss_pred hhHHHHHHHHHHHHHhcCCCC----CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcccc
Q 005009 594 SDLASIYSSYISQNLLQNPGL----KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669 (719)
Q Consensus 594 ~~~~~~~~~~le~~l~~~~~~----~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt 669 (719)
.+.+++.+.+.... ....++.+|++.|..+.-.|.+ .|.+.+++|.++|++||+++|+||++++|...
T Consensus 168 -------~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~ 239 (425)
T 2r2n_A 168 -------PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNS-LTSERKKEIYELARKYDFLIIEDDPYYFLQFN 239 (425)
T ss_dssp -------HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS
T ss_pred -------HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCcccccCC
Confidence 25577777521000 0113567888876436667765 57899999999999999999999999988666
Q ss_pred Cc----cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 670 GV----ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 670 G~----~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|. +...+..+....+.+++|.++.| +++|++++++++++.+.
T Consensus 240 g~~~~~~~~~~~~~~~i~~~s~SK~~~~G-lRiG~~~~~~~l~~~l~ 285 (425)
T 2r2n_A 240 KFRVPTFLSMDVDGRVIRADSFSKIISSG-LRIGFLTGPKPLIERVI 285 (425)
T ss_dssp SSCCCCTGGGCTTSCEEEEEESTTTTCST-TCCEEEEEEHHHHHHHH
T ss_pred CCCCCCccccCCCCCEEEEccchhhccCc-cceEEEecCHHHHHHHH
Confidence 65 23333333345566899999988 79999999999888764
No 175
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.00 E-value=7.2e-10 Score=126.31 Aligned_cols=225 Identities=13% Similarity=0.029 Sum_probs=136.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCC--C--CCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK--G--WASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~--~--~~~rv~f~~SGsEA~E 475 (719)
+|++.+..++....++. +|++++++.+++....+........+....+++.+.+..+. . .-+.++++++|++|+.
T Consensus 100 ~~~~~~i~l~~g~~~~~-~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~ 178 (533)
T 3f6t_A 100 KFLIDAVNYCHTELGLN-RDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIV 178 (533)
T ss_dssp HHHHHHHHHHHHTTCCC-HHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHH
T ss_pred cccHhheeccCCCCCcC-CcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHH
Confidence 44444444445577888 99999999998876444322233455666777777544121 0 0158999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++.......-.. ...|++..-+|++..... ...+..
T Consensus 179 ~~~~~l~~~~l~~~----------------gd~Viv~~p~~~~~~~~~-~~~g~~------------------------- 216 (533)
T 3f6t_A 179 YAFHSLAENHLLKK----------------GDKIAINEPIFTPYLRIP-ELKDYE------------------------- 216 (533)
T ss_dssp HHHHHHHHTTSSCT----------------TCEEEEESSCCHHHHTSG-GGGGSE-------------------------
T ss_pred HHHHHhhhhhccCC----------------cCEEEEcCCCcHHHHHHH-HHcCCe-------------------------
Confidence 99996311111111 247888888887743322 221110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...++.+.... ++ + .-| .+.+++.+. .++.+|++... +...|.
T Consensus 217 ---~~~v~~~~~~~-----------~~----~--~~d--------~~~l~~~l~--------~~~k~v~l~~p-~NPtG~ 259 (533)
T 3f6t_A 217 ---LVEVDLHSYEK-----------ND----W--EIE--------PNEIEKLKD--------PSIKALIVVNP-TNPTSK 259 (533)
T ss_dssp ---EEEECCCEETT-----------TT----S--EEC--------HHHHHHHSC--------TTEEEEEEESS-CTTTCB
T ss_pred ---EEEEEecCCcc-----------cC----C--CCC--------HHHHHHHhC--------CCCeEEEEeCC-CCCCcc
Confidence 01111110000 00 0 001 245666553 25566666443 566676
Q ss_pred ccCCHHHHHHHHHHHH-hcCCcEEEeccccCccccCccccccccCCCcceeeehhccC-CCccchheeEeCHH
Q 005009 636 HMVDPLFQRILVKECQ-NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA 706 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~-k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~ 706 (719)
+. +.+.+++|.++|+ +||+++|+||++.+|...+........+....+.+++|.+| .| +++|+++++++
T Consensus 260 ~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~ 330 (533)
T 3f6t_A 260 EF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTG-WRLGVIALNEK 330 (533)
T ss_dssp CC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGG-GCEEEEEEESS
T ss_pred cc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcc-cceEEEEECcH
Confidence 54 7888999999999 69999999999998866444333222233455668999998 68 79999999877
No 176
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.00 E-value=2.4e-09 Score=119.51 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=118.1
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +..++++||++|+..+++... +.| ..||+....||+
T Consensus 111 ~~~~~~~~l~~~lA~l~g~---~~~v~~~sG~~Ai~~al~~l~-----~~G----------------d~Vi~~~~~y~~- 165 (445)
T 1qgn_A 111 YGNPTTVVLEEKISALEGA---ESTLLMASGMCASTVMLLALV-----PAG----------------GHIVTTTDCYRK- 165 (445)
T ss_dssp GCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHS-----CSS----------------CEEEEETTSCHH-
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEcCCCchh-
Confidence 3567888999999998873 478889999999999998651 111 378888887776
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+...+... .. . . |.....+| .+|
T Consensus 166 ~~~~~~~~-~~---~---------~-------------G~~v~~v~--------------~~d----------------- 188 (445)
T 1qgn_A 166 TRIFIETI-LP---K---------M-------------GITATVID--------------PAD----------------- 188 (445)
T ss_dssp HHHHHHHT-GG---G---------G-------------TCEEEEEC--------------SSC-----------------
T ss_pred HHHHHHHH-HH---H---------c-------------CCEEEEeC--------------CCC-----------------
Confidence 33322100 00 0 0 00000111 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+.+ ..+.+|++|+. ++..|.+.+ +++|.++|++||++||+||+|+.+ .. ...+.
T Consensus 189 -~~~l~~ai~~-------~tv~lV~le~p-~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~----~~--~~~~~ 249 (445)
T 1qgn_A 189 -VGALELALNQ-------KKVNLFFTESP-TNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP----LN--QKALA 249 (445)
T ss_dssp -HHHHHHHHHH-------SCEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT----TT--CCTTT
T ss_pred -HHHHHHHhcc-------CCCCEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc----cc--CCccc
Confidence 2557777763 24589999997 888898877 899999999999999999999621 11 12234
Q ss_pred CCcceee--ehhccCCC-ccchheeEeCHHHHhhhc
Q 005009 680 CVPDIAC--YGKLLTGG-VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 680 v~PDIvt--lgK~LggG-~~Plsavl~~~~i~~~~~ 712 (719)
..+|+++ ++|.+||+ .+++|++++++++++.+.
T Consensus 250 ~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~ 285 (445)
T 1qgn_A 250 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIR 285 (445)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHH
T ss_pred cCCEEEEECCcccccccccceEEEEEECHHHHHHHH
Confidence 5689986 89999874 347899999999887653
No 177
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=98.97 E-value=5.1e-09 Score=114.80 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=122.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.|++.+|+.+.++...+. ...+...+|.++|+++++ .+.++|++||++|++.+++.+ . .|
T Consensus 31 p~~~~~a~~~~~~~~~y~----~~~~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~l~~l-~-----~g------- 90 (424)
T 2po3_A 31 RARLYERLDRALDSQWLS----NGGPLVREFEERVAGLAG---VRHAVATCNATAGLQLLAHAA-G-----LT------- 90 (424)
T ss_dssp HHHHHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHHT---SSEEEEESCHHHHHHHHHHHH-T-----CC-------
T ss_pred hHHHHHHHHHHHhcCCcc----cCCHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C-----CC-------
Confidence 468999998888653211 114677899999999987 368999999999999999977 2 11
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~ 576 (719)
.+|++...+||+... ++...|... ..++.. +.+
T Consensus 91 ---------d~Vlv~~~~~~~~~~-~~~~~G~~~----------------------------~~v~~~~~~~-------- 124 (424)
T 2po3_A 91 ---------GEVIMPSMTFAATPH-ALRWIGLTP----------------------------VFADIDPDTG-------- 124 (424)
T ss_dssp ---------SEEEEESSSCTHHHH-HHHHTTCEE----------------------------EEECBCTTTS--------
T ss_pred ---------CEEEECCCccHHHHH-HHHHcCCEE----------------------------EEEecCCCcC--------
Confidence 379999999998653 222222100 011110 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
. -| .+.+++.+. .++.+|++... . |... .+++|.++|++||++
T Consensus 125 ----~---------~d--------~~~l~~~i~--------~~~~~v~~~~~-t---G~~~----~l~~i~~la~~~~~~ 167 (424)
T 2po3_A 125 ----N---------LD--------PDQVAAAVT--------PRTSAVVGVHL-W---GRPC----AADQLRKVADEHGLR 167 (424)
T ss_dssp ----S---------BC--------HHHHGGGCC--------TTEEEEEEECG-G---GCCC----CHHHHHHHHHHTTCE
T ss_pred ----C---------cC--------HHHHHHhhC--------cCCcEEEEECC-C---CCcC----CHHHHHHHHHHcCCE
Confidence 0 01 234544442 25666665432 2 4443 499999999999999
Q ss_pred EEEecccc-CccccCccccccccCCCcceeeeh----hccCCCccchheeEeC-HHHHhhh
Q 005009 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 657 LI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~~ 711 (719)
+|+||+|+ |+...|..+ +..+|+++++ |+|++| .+|+++++ +++++.+
T Consensus 168 li~Dea~~~g~~~~~~~~-----~~~~di~~~S~sk~K~l~~~--~~G~~v~~~~~l~~~l 221 (424)
T 2po3_A 168 LYFDAAHALGCAVDGRPA-----GSLGDAEVFSFHATKAVNAF--EGGAVVTDDADLAARI 221 (424)
T ss_dssp EEEECTTCTTCEETTEET-----TSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHH
T ss_pred EEEECccccCCeECCeec-----ccccCEEEEeCCCCCCccCC--CCeEEEeCCHHHHHHH
Confidence 99999999 887666432 2236888776 999874 67889998 7877655
No 178
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=98.96 E-value=1.1e-09 Score=119.07 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=63.4
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-c--cccCCCcceeeehhccCCCc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-A--DLLGCVPDIACYGKLLTGGV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~--e~~gv~PDIvtlgK~LggG~ 695 (719)
++.+|++... +...|.+. |.+.+++|.++|++||+++|+||++..+ ..+..+. . ...+....+.+++|.++.|
T Consensus 180 ~~~~v~~~~p-~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G- 255 (417)
T 3g7q_A 180 ETGMICVSRP-TNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPG- 255 (417)
T ss_dssp TEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTT-
T ss_pred CceEEEECCC-CCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhccCCC-
Confidence 4667777654 67778765 6677999999999999999999999642 1121111 0 0112222366899976678
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+++|++++++++++.+.
T Consensus 256 ~r~G~~~~~~~~~~~~~ 272 (417)
T 3g7q_A 256 SRCGIIIANDKTITAIA 272 (417)
T ss_dssp SCCEEEECCHHHHHHHH
T ss_pred cceEEEEeCHHHHHHHH
Confidence 79999999999988764
No 179
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=98.96 E-value=1.1e-09 Score=117.32 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
+.+++.+.+ .++.+|++++. +...|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+..+.+
T Consensus 127 ~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~- 190 (385)
T 2bkw_A 127 ELITEKLSQ-------NSYGAVTVTHV-DTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW- 190 (385)
T ss_dssp HHHHHHHHH-------SCCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT-
T ss_pred HHHHHHHhc-------CCCCEEEEEcc-CCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc-
Confidence 556777752 24568889997 899998887 89999999999 99999999996 4432 2222323
Q ss_pred CCcceeee--hhccCCCccchheeEeCHHHHh
Q 005009 680 CVPDIACY--GKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 680 v~PDIvtl--gK~LggG~~Plsavl~~~~i~~ 709 (719)
.+|++++ +|.++|+ ..+|++++++++++
T Consensus 191 -~~d~~~~s~~K~~~~~-~G~G~~~~~~~~~~ 220 (385)
T 2bkw_A 191 -GVDFALTASQKAIGAP-AGLSISLCSSRFMD 220 (385)
T ss_dssp -TCSEEEEESSSTTCCC-SCEEEEEECHHHHH
T ss_pred -CceEEEecCccccccC-CcceEEEEcHHHHH
Confidence 4788764 6999875 35689999998876
No 180
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=98.96 E-value=6.2e-09 Score=112.59 Aligned_cols=201 Identities=8% Similarity=-0.014 Sum_probs=124.0
Q ss_pred ccccCCCCC-CCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh
Q 005009 408 WWTQGPDAT-LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (719)
Q Consensus 408 ~~~~~lGH~-~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~ 486 (719)
+++..+|.. .+|++.+|+.++++...+ ...+...++.++|+++++. +.++|++||++|++.|++.+ +..
T Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~al~~~-~~~- 72 (390)
T 3b8x_A 3 MINYPLASSTWDDLEYKAIQSVLDSKMF-----TMGEYVKQYETQFAKTFGS---KYAVMVSSGSTANLLMIAAL-FFT- 72 (390)
T ss_dssp --CBCSCCCCCCHHHHHHHHHHHHHTCC-----SSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TSS-
T ss_pred ceeccCCCCCCCHHHHHHHHHHHHcCCC-----CCChHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHH-Hhh-
Confidence 344344432 268999999999876432 2367788999999999874 57899999999999999887 321
Q ss_pred ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-
Q 005009 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP- 565 (719)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P- 565 (719)
...+. ....+||+...+||+...... ..|.. ...++..
T Consensus 73 ~~~~~------------~~g~~Vi~~~~~~~~~~~~~~-~~g~~----------------------------~~~~~~~~ 111 (390)
T 3b8x_A 73 KKPRL------------KKGDEIIVPAVSWSTTYYPLQ-QYGLR----------------------------VKFVDIDI 111 (390)
T ss_dssp SSCSC------------CTTCEEEEESSSCHHHHHHHH-HTTCE----------------------------EEEECBCT
T ss_pred hhcCC------------CCcCEEEECCCCcHHHHHHHH-HcCCE----------------------------EEEEecCc
Confidence 11010 123579999999998654322 22210 0011110
Q ss_pred chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHH
Q 005009 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (719)
Q Consensus 566 ~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~ 645 (719)
+.+ + -| .+.+++.+. .++.+|++... .| .. ..+++
T Consensus 112 ~~~------------~---------~d--------~~~l~~~i~--------~~~~~v~~~~~-~g---~~----~~~~~ 146 (390)
T 3b8x_A 112 NTL------------N---------ID--------IESLKEAVT--------DSTKAILTVNL-LG---NP----NNFDE 146 (390)
T ss_dssp TTC------------S---------BC--------HHHHHHHCC--------TTEEEEEEECG-GG---CC----CCHHH
T ss_pred ccc------------C---------cC--------HHHHHHHhC--------cCCeEEEEECC-cc---Ch----hhHHH
Confidence 000 0 01 255666664 24667766432 23 33 34999
Q ss_pred HHHHHHhcCCcEEEecccc-CccccCccccccccCCCcceeeehhccCCCcc--chheeEeCH-HHHh
Q 005009 646 LVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYGKLLTGGVI--PLAATLATN-AVFD 709 (719)
Q Consensus 646 Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~--Plsavl~~~-~i~~ 709 (719)
|.++|++||+++|+||+|+ |.. +....+|+.+|+.+++|..+.++. ..|++++++ ++.+
T Consensus 147 i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~ 209 (390)
T 3b8x_A 147 INKIIGGRDIILLEDNCESMGAT-----FNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYH 209 (390)
T ss_dssp HHHHHTTSCCEEEEECTTCTTCE-----ETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHH
T ss_pred HHHHHHHcCCEEEEECcCcccCE-----ECCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHH
Confidence 9999999999999999997 332 233567888999988765443211 235666665 5654
No 181
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=98.96 E-value=3.7e-09 Score=112.94 Aligned_cols=207 Identities=12% Similarity=0.019 Sum_probs=129.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCC-----ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~-----~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||+.++ |+. +|+|++|+.+++..........+. .+...++.++|++.++.. .+.++|+++|++|+
T Consensus 2 ~yld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 73 (382)
T 4eb5_A 2 AYFDYTSA------KPV-DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTTC------CCC-CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEESSHHHHH
T ss_pred eeeccCCC------CCC-CHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEcCchHHHH
Confidence 48887663 678 999999999998763211100011 245678888999888743 25899999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
+.+++.+.+.+ ...| ..|+....+|++.......+.. .+.
T Consensus 74 ~~~~~~l~~~~-~~~g----------------d~Vl~~~~~~~~~~~~~~~~~~----~g~------------------- 113 (382)
T 4eb5_A 74 NLAIIGYAMRN-ARKG----------------KHILVSAVEHMSVINPAKFLQK----QGF------------------- 113 (382)
T ss_dssp HHHHHHHHHHH-GGGC----------------CEEEEETTCCHHHHHHHHHHTT----TTC-------------------
T ss_pred HHHHHHHHhhc-cCCC----------------CEEEECCCcchHHHHHHHHHHh----CCc-------------------
Confidence 99999883222 1222 3688888888774332221110 000
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
....++....+ ..| .+.+++.+. .++.+|+++.. +...|
T Consensus 114 ---~~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG 152 (382)
T 4eb5_A 114 ---EVEYIPVGKYG-----------EVD------------------VSFIDQKLR--------DDTILVSVQHA-NNEIG 152 (382)
T ss_dssp ---EEEEECBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEECCSB-CTTTC
T ss_pred ---EEEEeccCCCC-----------ccC------------------HHHHHHHhc--------CCCeEEEEecc-CCCcc
Confidence 00111111000 001 245666664 25678999987 88889
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i 707 (719)
.+.+ +++|.++|++||++ |+||+++ +|... +....+ .+|+++. +|.+|- ..+|+++++++.
T Consensus 153 ~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~~--~~di~~~s~sK~~g~--~g~G~~~~~~~~ 215 (382)
T 4eb5_A 153 TIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEKI--GADMLTISSNDIYGP--KGVGALWIRKEA 215 (382)
T ss_dssp BBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHHH--TCSEEEEETGGGTCC--SSCEEEEEETTC
T ss_pred ccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCcccc--CCCEEEeehHHhcCC--CceEEEEEcccc
Confidence 8887 89999999999999 9999996 65332 222222 4788754 696432 126788888763
No 182
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=98.96 E-value=9.1e-09 Score=108.88 Aligned_cols=210 Identities=13% Similarity=0.059 Sum_probs=123.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
++|||.++.. .. - .|++.+++.+...... . ....+...+|.++|++..+ .+.+++++||++|++.+++
T Consensus 4 ~~i~~~~~~~---~~-p-~~~~~~a~~~~~~~~~--~--y~~~~~~~~l~~~la~~~g---~~~~~~~~~gt~a~~~~~~ 71 (347)
T 1jg8_A 4 MMIDLRSDTV---TK-P-TEEMRKAMAQAEVGDD--V--YGEDPTINELERLAAETFG---KEAALFVPSGTMGNQVSIM 71 (347)
T ss_dssp -CEECSCGGG---CC-C-CHHHHHHHHTCCCCCG--G--GTCCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHH
T ss_pred eEEEeccccC---CC-C-CHHHHHHHhcCCCCCc--c--cCCChHHHHHHHHHHHHhC---CceEEEecCcHHHHHHHHH
Confidence 6788887543 22 5 7899999876542111 1 1134566789999999887 3688999999999999987
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccc---ccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ga---lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
... +.| .+|+.. ...|+.+... ....|..
T Consensus 72 ~~~-----~~g----------------d~Vl~~-~~~~~~~~~~~~~~~~~g~~-------------------------- 103 (347)
T 1jg8_A 72 AHT-----QRG----------------DEVILE-ADSHIFWYEVGAMAVLSGVM-------------------------- 103 (347)
T ss_dssp HHC-----CTT----------------CEEEEE-TTCHHHHSSTTHHHHHTCCE--------------------------
T ss_pred Hhc-----CCC----------------CEEEEc-CcchhhhccccchhhccCeE--------------------------
Confidence 651 111 245554 4455543321 1111100
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC-cc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG-GM 635 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g-G~ 635 (719)
...+ .++.+ ..| .+.+++.+.+.. ....++.+|++++. +... |.
T Consensus 104 --~~~v-~~~~~-----------~~d------------------~~~l~~~i~~~~--~~~~~~~~v~~~~~-~npt~G~ 148 (347)
T 1jg8_A 104 --PHPV-PGKNG-----------AMD------------------PDDVRKAIRPRN--IHFPRTSLIAIENT-HNRSGGR 148 (347)
T ss_dssp --EEEE-CEETT-----------EEC------------------HHHHHHHSCCSC--TTSCCEEEEEEESS-BTTTTSB
T ss_pred --EEEe-cCCCC-----------ccC------------------HHHHHHHhcccc--ccccCceEEEEecc-ccccCCc
Confidence 0001 00000 001 255666664200 01136789999987 7776 65
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccc---cCccccccccCCCcce--eeehhccCCCccchhe-eEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR---LGVETTADLLGCVPDI--ACYGKLLTGGVIPLAA-TLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR---tG~~~a~e~~gv~PDI--vtlgK~LggG~~Plsa-vl~~~~i~~ 709 (719)
..|.+.+++|.++|++||+++|+||+|. +|. .|.. ...+....|. ++++|.+++ |+|+ +++++++++
T Consensus 149 -~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~ 221 (347)
T 1jg8_A 149 -VVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGVP--VKEYAGYADSVMFCLSKGLCA---PVGSVVVGDRDFIE 221 (347)
T ss_dssp -CCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCC--HHHHHHTCSEEEEESSSTTCC---SSCEEEEECHHHHH
T ss_pred -cCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCC--hHHhcccccEEEEecccccCC---CceEEEEcCHHHHH
Confidence 4578899999999999999999999874 321 1211 1111112343 469999975 4674 566877765
Q ss_pred hh
Q 005009 710 SF 711 (719)
Q Consensus 710 ~~ 711 (719)
.+
T Consensus 222 ~~ 223 (347)
T 1jg8_A 222 RA 223 (347)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 183
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=98.95 E-value=3e-09 Score=113.50 Aligned_cols=187 Identities=11% Similarity=0.047 Sum_probs=117.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|++.+|+.++++...+ ...+...++.++|+++++. +.++|++||++|++.+++.+ +.+. +
T Consensus 12 ~~~v~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~~-~~~~-~--------- 72 (375)
T 2fnu_A 12 DKEDKKAVLEVLNSKQL-----TQGKRSLLFEEALCEFLGV---KHALVFNSATSALLTLYRNF-SEFS-A--------- 72 (375)
T ss_dssp CHHHHHHHHHHHTSSCC-----SSSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHS-SCCC-T---------
T ss_pred CHHHHHHHHHHHHcCcc-----cCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHh-cccC-C---------
Confidence 89999999999876322 1256678999999999873 58999999999999999977 2110 1
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
...+|+....+||+..... ...|... ..++.....
T Consensus 73 -------~gd~Vl~~~~~~~~~~~~~-~~~g~~~----------------------------~~~~~~~~~--------- 107 (375)
T 2fnu_A 73 -------DRNEIITTPISFVATANML-LESGYTP----------------------------VFAGIKNDG--------- 107 (375)
T ss_dssp -------TSCEEEECSSSCTHHHHHH-HHTTCEE----------------------------EECCBCTTS---------
T ss_pred -------CCCEEEECCCccHhHHHHH-HHCCCEE----------------------------EEeccCCCC---------
Confidence 1247888888888854332 2221100 001100000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
..| .+.+++.+. .++.+|++... .|.+.+ +++|.++|++||+++
T Consensus 108 --~~d------------------~~~l~~~i~--------~~~~~v~~~~~----tG~~~~----l~~i~~l~~~~~~~l 151 (375)
T 2fnu_A 108 --NID------------------ELALEKLIN--------ERTKAIVSVDY----AGKSVE----VESVQKLCKKHSLSF 151 (375)
T ss_dssp --SBC------------------GGGSGGGCC--------TTEEEEEEECG----GGCCCC----HHHHHHHHHHHTCEE
T ss_pred --CCC------------------HHHHHhhcC--------cCceEEEEeCC----cCCccC----HHHHHHHHHHcCCEE
Confidence 001 122333332 24666665543 466665 899999999999999
Q ss_pred EEeccccCccccCccccccccCCCccee--eeh--hccCCCccchheeEeC--HHHHhhh
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDIA--CYG--KLLTGGVIPLAATLAT--NAVFDSF 711 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlg--K~LggG~~Plsavl~~--~~i~~~~ 711 (719)
|+||+|+ +|... ....++..+|++ +++ |.+|.| +|+++++ +++++.+
T Consensus 152 i~D~a~~-~~~~~---~~~~~~~~~~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~ 204 (375)
T 2fnu_A 152 LSDSSHA-LGSEY---QNKKVGGFALASVFSFHAIKPITTA---EGGAVVTNDSELHEKM 204 (375)
T ss_dssp EEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCCS---SCEEEEESCHHHHHHH
T ss_pred EEECccc-cCCeE---CCeeccccCCeEEEeCCCCCCcccc---CceEEEeCCHHHHHHH
Confidence 9999996 43322 112334334655 677 999765 5777774 6676544
No 184
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=98.94 E-value=1.9e-09 Score=113.74 Aligned_cols=165 Identities=13% Similarity=0.011 Sum_probs=109.7
Q ss_pred HHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc
Q 005009 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (719)
Q Consensus 447 ~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl 526 (719)
+|.++|+++.+. +.+++++||++|++.+++... +. ..+|+....+||+.......+
T Consensus 2 ~l~~~la~~~g~---~~~i~~~sG~~a~~~~~~~~~-----~~----------------g~~v~~~~~~~~~~~~~~~~~ 57 (331)
T 1pff_A 2 ALEGKIAKLEHA---EACAATASGMGAIAASVWTFL-----KA----------------GDHLISDDCLYGCTHALFEHQ 57 (331)
T ss_dssp HHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEESCCCHHHHHHHHTH
T ss_pred hHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc-----CC----------------CCEEEEcCCCcchHHHHHHHH
Confidence 577888888873 478889999999999999761 11 247899999888843332211
Q ss_pred cCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHH
Q 005009 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (719)
Q Consensus 527 t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~ 606 (719)
.... + .....+| ..|. +.+++
T Consensus 58 ~~~~---g------------------------~~~~~~~--------------~~d~------------------~~l~~ 78 (331)
T 1pff_A 58 LRKF---G------------------------VEVDFID--------------MAVP------------------GNIEK 78 (331)
T ss_dssp HHHT---T------------------------CEEEEEC--------------TTST------------------THHHH
T ss_pred HHhc---C------------------------CEEEEeC--------------CCCH------------------HHHHH
Confidence 1000 0 0000011 1111 23444
Q ss_pred HHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHh-cCCcEEEeccccCccccCccccccccCCCccee
Q 005009 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA 685 (719)
Q Consensus 607 ~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k-~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv 685 (719)
.+. +++.+|++++. ++..|.+.+ +++|.++|++ ||+++|+||+|+. |...... .++ +|++
T Consensus 79 ~i~--------~~~~~v~~~~~-~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~-~~~~~~~---~~~--~d~~ 139 (331)
T 1pff_A 79 HLK--------PNTRIVYFETP-ANPTLKVID----IEDAVKQARKQKDILVIVDNTFAS-PILTNPL---DLG--VDIV 139 (331)
T ss_dssp TCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTH-HHHCCGG---GGT--CSEE
T ss_pred hhc--------CCCeEEEEECC-CCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcc-cccCChh---hcC--CcEE
Confidence 442 36789999997 899999886 9999999999 9999999999962 2222111 244 5655
Q ss_pred --eehhccCCCccc-hheeEeCH-HHHhhhcC
Q 005009 686 --CYGKLLTGGVIP-LAATLATN-AVFDSFVG 713 (719)
Q Consensus 686 --tlgK~LggG~~P-lsavl~~~-~i~~~~~~ 713 (719)
+++|.++++-.+ +|++++++ ++++.+..
T Consensus 140 ~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~ 171 (331)
T 1pff_A 140 VHSATKYINGHTDVVAGLVCSRADIIAKVKSQ 171 (331)
T ss_dssp EEETTTTTSSSSSCCCEEEEECHHHHHHHHHT
T ss_pred EEECccccCCCCCceEEEEEeCcHHHHHHHHH
Confidence 699999874357 67899998 88877654
No 185
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=98.93 E-value=7.9e-09 Score=109.83 Aligned_cols=205 Identities=11% Similarity=0.002 Sum_probs=127.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
-|||+.+ -+.. +|++.+|+.+++.+........+ ..+...++.++|++.++.. .+.++|+++|++|+
T Consensus 2 iyld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~~~a~ 73 (382)
T 4hvk_A 2 AYFDYTS------AKPV-DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTT------CCCC-CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSHHHHH
T ss_pred EeecCCC------cCCC-CHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEECCchHHH
Confidence 4788665 3567 99999999999876322111111 1234558888888887743 35799999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccccc--CCCCCCCCCCCCCccCCCcccCCCc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ--APSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt--~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
+.+++.... .....| ..||.....|++.......+. |..
T Consensus 74 ~~~~~~~~~-~~~~~g----------------d~vi~~~~~~~~~~~~~~~~~~~g~~---------------------- 114 (382)
T 4hvk_A 74 NLAIIGYAM-RNARKG----------------KHILVSAVEHMSVINPAKFLQKQGFE---------------------- 114 (382)
T ss_dssp HHHHHHHHH-HHGGGC----------------CEEEEETTCCHHHHHHHHHHHHTTCE----------------------
T ss_pred HHHHHHhhh-hhcCCC----------------CEEEECCCCcHHHHHHHHHHHhcCCE----------------------
Confidence 999998732 221222 367777777766433221111 100
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
...++....+ ..| .+.+++.+. .+..+|+++.. +..
T Consensus 115 ------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~np 150 (382)
T 4hvk_A 115 ------VEYIPVGKYG-----------EVD------------------VSFIDQKLR--------DDTILVSVQHA-NNE 150 (382)
T ss_dssp ------EEEECBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEECCSB-CTT
T ss_pred ------EEEeccCCCC-----------CcC------------------HHHHHHHhc--------cCceEEEEECC-CCC
Confidence 0111111000 001 255666664 35689999997 899
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i 707 (719)
.|.+.+ +++|.++|++||+ +|+||+|+ +|.. .+..+.+ .+|+++ ++|.+| + ..+|+++++++.
T Consensus 151 tG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~g-~-~g~g~~~~~~~~ 215 (382)
T 4hvk_A 151 IGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKI--GADMLTISSNDIYG-P-KGVGALWIRKEA 215 (382)
T ss_dssp TCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHH--TCSEEEEESGGGTS-C-TTCEEEEEETTC
T ss_pred ceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhc--CCCEEEEeHHHhcC-C-CceEEEEEcCcc
Confidence 998887 8999999999999 99999996 3321 1222333 367775 559543 3 347888887753
No 186
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=98.93 E-value=5.1e-09 Score=114.51 Aligned_cols=169 Identities=9% Similarity=0.036 Sum_probs=114.7
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.+++++||+||++.|++ .. +. ...||+....|||.
T Consensus 52 ~~~~~~~~lr~~la~~~g~---~~~i~~~sGt~a~~~al~-~~-----~~----------------gd~Vi~~~~~y~~~ 106 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENA---QYGLAFSSGSATTATILQ-SL-----PQ----------------GSHAVSIGDVYGGT 106 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHH-TS-----CS----------------SCEEEEESSCCHHH
T ss_pred CCChhHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHH-Hc-----CC----------------CCEEEEeCCCchHH
Confidence 3466778999999998874 478899999999999999 41 11 13788888888873
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+... .+. .+. ....+| . +
T Consensus 107 -~~~~~~~----~~~---------~G~-------------~v~~v~--------------~--------------~---- 127 (393)
T 1n8p_A 107 -HRYFTKV----ANA---------HGV-------------ETSFTN--------------D--------------L---- 127 (393)
T ss_dssp -HHHHHHT----STT---------TCS-------------CCEEES--------------S--------------H----
T ss_pred -HHHHHHH----HHH---------cCc-------------EEEEeC--------------C--------------C----
Confidence 2221100 000 000 000011 0 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc----CCcEEEeccccCccccCccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR----KIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~----gilLI~DEVqTGfGRtG~~~a~ 675 (719)
. +.+++.+. .++.+|++|.+ ++..|.+.+ +++|.++|++| |+++|+||+|+++.+ +..+.
T Consensus 128 d-~~l~~~i~--------~~t~lv~~~~~-~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~~~-~~~~~- 191 (393)
T 1n8p_A 128 L-NDLPQLIK--------ENTKLVWIETP-TNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSPYI-SNPLN- 191 (393)
T ss_dssp H-HHHHHHSC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CCGGG-
T ss_pred h-HHHHHhcc--------cCceEEEEECC-CCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccccc-CCHHH-
Confidence 1 34555553 35789999997 899999886 99999999999 999999999987654 33322
Q ss_pred cccCCCccee--eehhccCCCccch-heeEeC-HHHHhhhc
Q 005009 676 DLLGCVPDIA--CYGKLLTGGVIPL-AATLAT-NAVFDSFV 712 (719)
Q Consensus 676 e~~gv~PDIv--tlgK~LggG~~Pl-savl~~-~~i~~~~~ 712 (719)
+ .+|++ +++|.+|+.-.++ |+++++ +++++.+.
T Consensus 192 --~--~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~ 228 (393)
T 1n8p_A 192 --F--GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ 228 (393)
T ss_dssp --G--TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH
T ss_pred --c--CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHH
Confidence 2 37887 7999999632677 777775 77777653
No 187
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=98.93 E-value=7e-09 Score=117.34 Aligned_cols=190 Identities=16% Similarity=0.096 Sum_probs=121.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh----ccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS----FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 445 ~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~----~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
..++.+.|+++++.+ ...++|+++|+|||..|++.+ |.+. +..|. ....|..|++.+ ..|.+.
T Consensus 150 e~~~~~~la~l~g~~-~~~~~~t~ggtea~~~al~~a-r~~~~~~~~~~G~----------~~~~~~~vl~s~-~~h~s~ 216 (515)
T 2jis_A 150 EEEVLRKLRALVGWS-SGDGIFCPGGSISNMYAVNLA-RYQRYPDCKQRGL----------RTLPPLALFTSK-ECHYSI 216 (515)
T ss_dssp HHHHHHHHHHHHTCS-SCEEEEESSHHHHHHHHHHHH-HHHHCTTHHHHCG----------GGSCCEEEEEET-TSCTHH
T ss_pred HHHHHHHHHHHhCCC-CCCeEEcCCcHHHHHHHHHHH-HHHHhhHHhhcCc----------cccCCeEEEECC-CccHHH
Confidence 345666788877743 358999999999999999999 5432 11111 000122454444 457665
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
..++...+.. . .....++....++ -|
T Consensus 217 ~~~~~~~g~g-~------------------------~~v~~v~~~~~~~---------------------~d-------- 242 (515)
T 2jis_A 217 QKGAAFLGLG-T------------------------DSVRVVKADERGK---------------------MV-------- 242 (515)
T ss_dssp HHHHHHTTSC-G------------------------GGEEEECBCTTSC---------------------BC--------
T ss_pred HHHHHHcCCC-C------------------------CcEEEEecCCCCc---------------------CC--------
Confidence 5554443210 0 0011222211110 01
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.|++.|.+.. ..+.++++|++... ....|.+.+ +++|.++|++||++||+|++++|+......+.+...|+
T Consensus 243 ~~~L~~~i~~~~--~~g~~~~~Vv~~~~-~n~tG~i~~----l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~ 315 (515)
T 2jis_A 243 PEDLERQIGMAE--AEGAVPFLVSATSG-TTVLGAFDP----LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGI 315 (515)
T ss_dssp HHHHHHHHHHHH--HTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTG
T ss_pred HHHHHHHHHHHH--hCCCCcEEEEEeCC-CCCCCCccC----HHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCC
Confidence 244555554210 11336788888876 777888877 99999999999999999999998877666555555566
Q ss_pred -Ccceeee--hhccCCCccchheeEeCHH--HHh
Q 005009 681 -VPDIACY--GKLLTGGVIPLAATLATNA--VFD 709 (719)
Q Consensus 681 -~PDIvtl--gK~LggG~~Plsavl~~~~--i~~ 709 (719)
.+|++++ .|.++++ .++|+++++++ +++
T Consensus 316 ~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~ 348 (515)
T 2jis_A 316 QRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLK 348 (515)
T ss_dssp GGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHH
T ss_pred ccCCEEEECcccccCCC-CCeeEEEEeChHHHHH
Confidence 7899987 9999877 57899999977 655
No 188
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=98.92 E-value=3.4e-09 Score=116.52 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=64.9
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc---ccccCCCcceeeehhccCCC
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT---ADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a---~e~~gv~PDIvtlgK~LggG 694 (719)
.++.+|++... +...|.+. |.+.+++|.++|++||+++|+||+|..+ ..+..+. ....+...++.+++|.+..|
T Consensus 205 ~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G 281 (444)
T 3if2_A 205 GRIGAICCSRP-TNPTGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG 281 (444)
T ss_dssp TCEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG
T ss_pred CCceEEEeCCC-CCCCCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC
Confidence 35666666543 67778755 6778999999999999999999999632 1111111 01233445567899987778
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+++|++++++++.+.+.
T Consensus 282 -~r~G~~~~~~~l~~~~~ 298 (444)
T 3if2_A 282 -MRTGIIVADAKVIEAVS 298 (444)
T ss_dssp -GCCEEEECCHHHHHHHH
T ss_pred -CceEEEEECHHHHHHHH
Confidence 79999999999988764
No 189
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=98.91 E-value=6.9e-10 Score=121.76 Aligned_cols=102 Identities=9% Similarity=0.042 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH-HhcCCcEEEeccccC--ccccCc----ccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTG--FWRLGV----ETT 674 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc-~k~gilLI~DEVqTG--fGRtG~----~~a 674 (719)
+.+++.+. ..++.+|++.|..+.-.|.+. |.+.+++|.++| ++||+++|+||++++ |+..+. ++.
T Consensus 170 ~~l~~~l~-------~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 241 (427)
T 3ppl_A 170 DAVEELVK-------NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVG 241 (427)
T ss_dssp HHHHHHTT-------STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHH
T ss_pred HHHHHHHh-------cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhh
Confidence 55666663 246788888976466677766 566699999999 999999999999998 544442 222
Q ss_pred c----cccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 675 A----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 675 ~----e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
. +..+...++.+++|.++.| +.+|.+++++++++.+.
T Consensus 242 ~~~~~~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~~~~ 282 (427)
T 3ppl_A 242 LGEAAGNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRKWYT 282 (427)
T ss_dssp HHHHTTCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHHHHH
T ss_pred hhhccCCCCcEEEEechhhccCcC-ccEEEEEcCHHHHHHHH
Confidence 2 1345556677999997778 79999999999887764
No 190
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=98.90 E-value=8.7e-09 Score=112.64 Aligned_cols=190 Identities=15% Similarity=0.082 Sum_probs=120.8
Q ss_pred CHHHHHHHHHhhhhcccc-c-CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 005009 418 QIELARDMGYTAARFGHV-M-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~-~-~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~ 495 (719)
+|++.+|+.++++...+. . ......+...+++++|++..+. +.++|++||++|++.|++.+ +. ..
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~---~~~i~~~~gt~al~~~~~~~-~~---~~------ 81 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV---PYCVPTTSGSTALMLALEAL-GI---GE------ 81 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TC---CT------
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-CC---CC------
Confidence 699999999998764322 1 1112244478999999998873 47889999999999999876 11 11
Q ss_pred cCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc-hhhhcccc
Q 005009 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVE 574 (719)
Q Consensus 496 ~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~ 574 (719)
..+||....+||+..... ...|.. ...++... .+
T Consensus 82 ----------gd~Vl~~~~~~~~~~~~~-~~~g~~----------------------------~~~~~~~~~~~------ 116 (418)
T 2c81_A 82 ----------GDEVIVPSLTWIATATAV-LNVNAL----------------------------PVFVDVEADTY------ 116 (418)
T ss_dssp ----------TCEEEEESSSCTHHHHHH-HHTTCE----------------------------EEEECBCTTTC------
T ss_pred ----------cCEEEECCCccHhHHHHH-HHcCCE----------------------------EEEEecCCCCC------
Confidence 247899999988864432 222110 00111110 00
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
. -| .+.+++.+. .++.+|++... . |...+ +++|.++|++||
T Consensus 117 ------~---------~d--------~~~l~~~i~--------~~~~~v~~~~~-~---G~~~~----~~~i~~~~~~~~ 157 (418)
T 2c81_A 117 ------C---------ID--------PQLIKSAIT--------DKTKAIIPVHL-F---GSMAN----MDEINEIAQEHN 157 (418)
T ss_dssp ------S---------BC--------HHHHGGGCC--------TTEEEECCBCC-T---TCCCC----HHHHHHHHHHTT
T ss_pred ------C---------cC--------HHHHHHhhC--------CCCeEEEEeCC-c---CCccc----HHHHHHHHHHCC
Confidence 0 01 234544442 35778887664 3 44443 899999999999
Q ss_pred CcEEEeccccCccc-cCccccccccCCCcceee--e--hhccCCCccchheeEeC-HHHHhhh
Q 005009 655 IPVIFDEVFTGFWR-LGVETTADLLGCVPDIAC--Y--GKLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 655 ilLI~DEVqTGfGR-tG~~~a~e~~gv~PDIvt--l--gK~LggG~~Plsavl~~-~~i~~~~ 711 (719)
+++|+||+|+.+.+ .|. ..+..+|+++ + +|.+|+| .+|+++++ +++++.+
T Consensus 158 ~~li~D~a~~~~~~~~~~-----~~~~~~~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~ 213 (418)
T 2c81_A 158 LFVIEDCAQSHGSVWNNQ-----RAGTIGDIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELI 213 (418)
T ss_dssp CEEEEECTTCTTCEETTE-----ETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHH
T ss_pred CEEEEECcccccCccCCE-----ecccccceEEEeccCCcccCCC--CeEEEEECCHHHHHHH
Confidence 99999999986542 232 2232346654 4 9999886 67888884 7776654
No 191
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=98.90 E-value=6.9e-09 Score=111.87 Aligned_cols=187 Identities=16% Similarity=0.170 Sum_probs=119.8
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.|++.+|+.++++...+. ....+...+|.++|+++++. +..++++||++|++.|++.+ + ...
T Consensus 16 ~~~~~~a~~~~l~~~~~~---~~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~al~~~l~~l-~---~~~-------- 77 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWW---RMGGDEVNSFEREFAAHHGA---AHALAVTNGTHALELALQVM-G---VGP-------- 77 (388)
T ss_dssp CHHHHHHHHHHHHTSCCB---TTTCSHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T---CCT--------
T ss_pred CHHHHHHHHHHHHcCCee---ecCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-C---CCC--------
Confidence 489999999998763221 12356678999999999874 46778889999999999876 1 011
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~ 576 (719)
..+||+...+||+..... ...|.. ...++.. +.+
T Consensus 78 --------gd~Vi~~~~~~~~~~~~~-~~~g~~----------------------------~~~v~~~~~~~-------- 112 (388)
T 1b9h_A 78 --------GTEVIVPAFTFISSSQAA-QRLGAV----------------------------TVPVDVDAATY-------- 112 (388)
T ss_dssp --------TCEEEEESSSCTHHHHHH-HHTTCE----------------------------EEEECBCTTTC--------
T ss_pred --------cCEEEECCCccHHHHHHH-HHcCCE----------------------------EEEEecCCCcC--------
Confidence 247999999998864322 211110 0011110 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
. -| .+.+++.+. .++.+|+ |. .. .|.+.+ +++|.++|++||++
T Consensus 113 ----~---------~d--------~~~l~~~i~--------~~~~~v~--~~-n~-tG~~~~----l~~i~~la~~~~~~ 155 (388)
T 1b9h_A 113 ----N---------LD--------PEAVAAAVT--------PRTKVIM--PV-HM-AGLMAD----MDALAKISADTGVP 155 (388)
T ss_dssp ----C---------BC--------HHHHHHHCC--------TTEEEEC--CB-CG-GGCCCC----HHHHHHHHHHHTCC
T ss_pred ----C---------CC--------HHHHHHhcC--------cCceEEE--Ee-CC-ccCcCC----HHHHHHHHHHcCCE
Confidence 0 01 255666663 2466666 75 44 466655 89999999999999
Q ss_pred EEEecccc-CccccCccccccccCCCcceeeeh----hccCCCccchheeEeCHH-H--Hhhh
Q 005009 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNA-V--FDSF 711 (719)
Q Consensus 657 LI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~~~-i--~~~~ 711 (719)
+|+||+|+ |+...|..+ ..+ +|+++++ |+++|| .+|+++++++ + ++.+
T Consensus 156 li~D~a~~~g~~~~~~~~--~~~---~~i~~~S~s~~K~l~g~--~~G~~~~~~~~~~~~~~~ 211 (388)
T 1b9h_A 156 LLQDAAHAHGARWQGKRV--GEL---DSIATFSFQNGKLMTAG--EGGAVVFPDGETEKYETA 211 (388)
T ss_dssp BCEECTTCTTCEETTEEG--GGS---SSCEEEECCTTSSSCSS--SCEEEEECTTCHHHHHHH
T ss_pred EEEecchhcCCccCCeec--ccc---cceEEEEccCCCcccCC--CeEEEEECCHHHHHHHHH
Confidence 99999997 443444322 222 3676666 999877 3788888875 6 4543
No 192
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=98.89 E-value=8e-09 Score=109.37 Aligned_cols=200 Identities=13% Similarity=0.048 Sum_probs=122.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC---CCCCCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~---~~~~~rv~f~~SGsEA~E~ 476 (719)
+++||.++.. .++ . +|++.+|+.+++.+..... +......++.+.|+++.+ -. .+.++|+++|++|++.
T Consensus 20 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~---y~~~~~~~lr~~la~~~~~~~~~-~~~v~~~~G~~~al~~ 91 (335)
T 1uu1_A 20 DKTYLALNEN--PFP-F-PEDLVDEVFRRLNSDALRI---YYDSPDEELIEKILSYLDTDFLS-KNNVSVGNGADEIIYV 91 (335)
T ss_dssp CSEEESSCCC--SSC-C-CHHHHHHHHHTCCGGGGGS---CCCSSCHHHHHHHHHHHTCSSCC-GGGEEEESSHHHHHHH
T ss_pred cceECCCCCC--CCC-C-CHHHHHHHHHHhhhhhhhc---CCCCchHHHHHHHHHHcCCCCCC-HHHEEEcCChHHHHHH
Confidence 6888887653 354 5 8999999999884322211 112224567777777665 22 3689999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++.+ + .+|+.. .+||+....+ ...|...
T Consensus 92 ~~~~~-----g-------------------d~Vl~~-p~y~~~~~~~-~~~g~~~------------------------- 120 (335)
T 1uu1_A 92 MMLMF-----D-------------------RSVFFP-PTYSCYRIFA-KAVGAKF------------------------- 120 (335)
T ss_dssp HHHHS-----S-------------------EEEECS-SSCHHHHHHH-HHHTCEE-------------------------
T ss_pred HHHHh-----C-------------------CcEEEC-CCcHHHHHHH-HHcCCeE-------------------------
Confidence 98865 2 268888 8999855332 2222100
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCcc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGM 635 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI-vEPViqg~gG~ 635 (719)
..++..+.+ ..|. +.+ .++.+|+ ..| +...|.
T Consensus 121 ---~~v~~~~~~-----------~~d~------------------~~l-------------~~~~~v~l~~p--~nptG~ 153 (335)
T 1uu1_A 121 ---LEVPLTKDL-----------RIPE------------------VNV-------------GEGDVVFIPNP--NNPTGH 153 (335)
T ss_dssp ---EECCCCTTS-----------CCCC------------------CCC-------------CTTEEEEEESS--CTTTCC
T ss_pred ---EEeccCCCC-----------CCCH------------------HHc-------------CCCCEEEEeCC--CCCCCC
Confidence 001110000 0010 001 1234555 677 566676
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-ccccCCCcceeeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+. |.+.++++.++| | ++|+||++++|+. +.... .+.++....+.+++|.+| .| +++|++++++++++.+.
T Consensus 154 ~~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~ 225 (335)
T 1uu1_A 154 VF-EREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAA-QRVGYVVASEKFIDAYN 225 (335)
T ss_dssp CC-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHH
T ss_pred CC-CHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcc-cCeEEEEeCHHHHHHHH
Confidence 65 555555555555 8 8999999998753 22222 223333445568999998 78 79999999999988764
No 193
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=98.88 E-value=6.6e-09 Score=109.70 Aligned_cols=188 Identities=14% Similarity=0.047 Sum_probs=122.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|++++|+.+++.. +.. ....+...++.++|++..+.. .+.++++++|++|++.+++.+. +.
T Consensus 13 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~~~-----~~-------- 74 (352)
T 1iug_A 13 HPKALEALARPQLH--HRT--EAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNLF-----AP-------- 74 (352)
T ss_dssp CHHHHHHHHSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHhccCCCC--ccC--HHHHHHHHHHHHHHHHHhCCC-CceEEEcCchHHHHHHHHHhcc-----CC--------
Confidence 89999999988752 110 011234578889999988743 2589999999999999999872 11
Q ss_pred CCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
..+|++...+||+.....+ ...|.. ...++.+..+
T Consensus 75 --------gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 110 (352)
T 1iug_A 75 --------GERVLVPVYGKFSERFYEIALEAGLV----------------------------VERLDYPYGD-------- 110 (352)
T ss_dssp --------TCEEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred --------CCeEEEEeCCchhHHHHHHHHHcCCc----------------------------eEEEeCCCCC--------
Confidence 2479999999998641111 101100 0111111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc--C
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--K 654 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~--g 654 (719)
..|. +.++ . .++.+|+++.. +...|.+.+ +++|.++|++| |
T Consensus 111 ---~~d~------------------~~l~---------~--~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 153 (352)
T 1iug_A 111 ---TPRP------------------EDVA---------K--EGYAGLLLVHS-ETSTGALAD----LPALARAFKEKNPE 153 (352)
T ss_dssp ---CCCT------------------TTSC---------C--SSCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCTT
T ss_pred ---CCCH------------------HHHh---------c--cCCcEEEEEEe-cCCcceecC----HHHHHHHHHhhCCC
Confidence 0010 1111 1 34567888887 888898877 89999999999 9
Q ss_pred CcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhh
Q 005009 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 655 ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~ 710 (719)
+++|+||+++ +|... +..+.+ .+|++++ +|.++|+ ..+|++++++++++.
T Consensus 154 ~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~ 205 (352)
T 1iug_A 154 GLVGADMVTS-LLVGE--VALEAM--GVDAAASGSQKGLMCP-PGLGFVALSPRALER 205 (352)
T ss_dssp CEEEEECTTT-BTTBC--CCSGGG--TCSEEEEESSSTTCCC-SCEEEEEECHHHHHT
T ss_pred CEEEEECCcc-ccCcc--eecccc--CeeEEEecCcccccCC-CceeEEEECHHHHHH
Confidence 9999999995 55432 222323 4788754 6988875 457899999998754
No 194
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=98.88 E-value=2.7e-08 Score=100.24 Aligned_cols=87 Identities=16% Similarity=0.238 Sum_probs=67.7
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC----CCHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL----VNEV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~----~~~~ 295 (719)
.+|+|||++.+++. .....++...+ .+|+|+.....++.++...++.++..+.++.|+|+|++.. ....
T Consensus 111 ~yD~viiD~~~~~~------~~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~ 183 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ------LDAMSAMLSGE-EALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GCSEEEEECCSSSS------HHHHHHHTTCS-EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTCCCHH
T ss_pred cCCEEEEECCCCcC------HHHHHHHHHCC-eEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccchhHHH
Confidence 39999999987643 23344444444 6899999998999999999999998899999999999832 3456
Q ss_pred HHHHhhcCCCcEEe-cCCCCC
Q 005009 296 PLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 296 ~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.+.+.+ +.|+++ ||+.+.
T Consensus 184 ~~~~~~--~~~~~~~Ip~~~~ 202 (237)
T 1g3q_A 184 AAEDVM--EVPLLAVIPEDPA 202 (237)
T ss_dssp HHHHHH--CSCEEEEEECCHH
T ss_pred HHHHHh--CccceeeCCCChH
Confidence 666666 899999 998654
No 195
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=98.85 E-value=2e-08 Score=110.77 Aligned_cols=188 Identities=14% Similarity=0.008 Sum_probs=117.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh-cccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~-~~~G~~~~~~ 496 (719)
+|++.+|+.+++....+. ..+...+|.++|+++++. +.++|++||++|++.|++.+ +.+. .+.+.
T Consensus 42 ~~~~~~a~~~~~~~~~~~-----~~~~~~~l~~~la~~~g~---~~~i~~~sGt~a~~~al~~l-~~~~~~~~~~----- 107 (437)
T 3bb8_A 42 GTKELQLMVEASLDGWLT-----TGRFNDAFEKKLGEYLGV---PYVLTTTSGSSANLLALTAL-TSPKLGVRAL----- 107 (437)
T ss_dssp CHHHHHHHHHHHHHCCCB-----SCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TCGGGGGGSC-----
T ss_pred CHHHHHHHHHHHHcCCcC-----CChHHHHHHHHHHHHHCC---CcEEEeCCHHHHHHHHHHHh-hhcccccccC-----
Confidence 589999999988764332 346778999999999874 57999999999999999876 2111 00000
Q ss_pred CCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc-hhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~ 575 (719)
....+||....+||+...... ..|.. ...++... .+.
T Consensus 108 -------~~gd~Vi~~~~~~~~~~~~~~-~~g~~----------------------------~~~v~~~~~~~~------ 145 (437)
T 3bb8_A 108 -------KPGDEVITVAAGFPTTVNPTI-QNGLI----------------------------PVFVDVDIPTYN------ 145 (437)
T ss_dssp -------CTTCEEEECSSSCHHHHHHHH-HTTCE----------------------------EEECCEETTTTE------
T ss_pred -------CCcCEEEECCCCcHHHHHHHH-HcCCE----------------------------EEEEeccCccCC------
Confidence 112478888888888554332 22110 00011100 000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
-| .+.+++.+. .++.+|++ ++ . |.. ..+++|.++|++||
T Consensus 146 -----~d------------------~~~l~~~i~--------~~~~~v~~~~~--~---g~~----~~~~~i~~l~~~~~ 185 (437)
T 3bb8_A 146 -----VN------------------ASLIEAAVS--------DKTKAIMIAHT--L---GNL----FDLAEVRRVADKYN 185 (437)
T ss_dssp -----EC------------------GGGHHHHCC--------TTEEEEEEECG--G---GCC----CCHHHHHHHHHHHT
T ss_pred -----cC------------------HHHHHHhcC--------CCCeEEEEeCC--C---CCh----hcHHHHHHHHHHcC
Confidence 01 134555553 24666666 43 2 333 34999999999999
Q ss_pred CcEEEecccc-CccccCccccccccCCCcceeee----hhccCCCccchheeEeCHHHH
Q 005009 655 IPVIFDEVFT-GFWRLGVETTADLLGCVPDIACY----GKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 655 ilLI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtl----gK~LggG~~Plsavl~~~~i~ 708 (719)
+++|+||+|+ |....| ..++..+|++++ +|+|+||. .|+++++++.+
T Consensus 186 ~~li~D~a~~~g~~~~~-----~~~~~~~d~~~~s~~~~k~l~~g~--gg~~~~~~~~~ 237 (437)
T 3bb8_A 186 LWLIEDCCDALGSTYDG-----KMAGTFGDIGTVSFYPAKHITMGE--GGAVFTQSAEL 237 (437)
T ss_dssp CEEEEECTTCTTCEETT-----EETTSSSSEEEEECSTTSSSCCSS--CEEEEESCHHH
T ss_pred CEEEEECccccCceECC-----eecccccCEEEEECcCCcCCCCCC--eEEEEeCCHHH
Confidence 9999999997 432222 344556898765 48997763 67788875543
No 196
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=98.85 E-value=1.5e-08 Score=113.53 Aligned_cols=167 Identities=11% Similarity=0.051 Sum_probs=112.1
Q ss_pred CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 441 ~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.++...+++++|++..+. +.+++++||++|+..+++++ +. ...||..+..||+..
T Consensus 131 g~~~~~~l~~~la~~~g~---~~~i~~~sGt~al~~~l~~~------~~----------------Gd~Vi~~~~~y~~~~ 185 (464)
T 1ibj_A 131 GNPTRDALESLLAKLDKA---DRAFCFTSGMAALSAVTHLI------KN----------------GEEIVAGDDVYGGSD 185 (464)
T ss_dssp CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTS------CT----------------TCEEEEESSCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHh------CC----------------CCEEEEECCCchhHH
Confidence 456778899999998873 58899999999998777632 11 247888888888732
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
..+... . +. . |...+.+| ..|
T Consensus 186 -~~~~~~--~--~~---------~-------------G~~v~~v~--------------~~d------------------ 206 (464)
T 1ibj_A 186 -RLLSQV--V--PR---------S-------------GVVVKRVN--------------TTK------------------ 206 (464)
T ss_dssp -HHHHHT--S--GG---------G-------------TCEEEEEC--------------TTS------------------
T ss_pred -HHHHHH--H--HH---------c-------------CCEEEEeC--------------CCC------------------
Confidence 211100 0 00 0 00011111 111
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.+++.+. .++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||+++. |..+..-. .
T Consensus 207 ~~~l~~~i~--------~~tk~v~l~~p-~NptG~v~~----l~~i~~la~~~gi~livDea~~~----g~~~~~~~--~ 267 (464)
T 1ibj_A 207 LDEVAAAIG--------PQTKLVWLESP-TNPRQQISD----IRKISEMAHAQGALVLVDNSIMS----PVLSRPLE--L 267 (464)
T ss_dssp HHHHHHHCC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC----TTTCCGGG--T
T ss_pred HHHHHHHhc--------cCceEEEEeCC-CCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc----cccCChhh--c
Confidence 245666663 36889999997 888898886 99999999999999999999963 22221111 3
Q ss_pred Cccee--eehhccCC--CccchheeEeCH-HHHhhh
Q 005009 681 VPDIA--CYGKLLTG--GVIPLAATLATN-AVFDSF 711 (719)
Q Consensus 681 ~PDIv--tlgK~Lgg--G~~Plsavl~~~-~i~~~~ 711 (719)
.+|++ +++|.++| | +++|++++++ ++.+.+
T Consensus 268 ~~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 268 GADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp TCSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHH
T ss_pred CCEEEEECCcccccCCCC-CcEEEEEEChHHHHHHH
Confidence 47887 59999987 7 6889999984 776654
No 197
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=98.84 E-value=7.1e-08 Score=104.16 Aligned_cols=218 Identities=12% Similarity=0.050 Sum_probs=128.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.++|+..|.. .++ . +|.+.+|+.++++.... ........+....+++.+....+.. ..+.++++++|++|++.+
T Consensus 32 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~ 107 (385)
T 1b5p_A 32 DLVALTAGEP--DFD-T-PEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL 107 (385)
T ss_dssp CCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHH
Confidence 5667665432 233 2 68999999988765211 1111123345556666665533311 135799999999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++... .. ..+|+....+|++.... ....|..
T Consensus 108 ~~~l~-----~~----------------gd~Vlv~~p~y~~~~~~-~~~~g~~--------------------------- 138 (385)
T 1b5p_A 108 FQAIL-----DP----------------GDEVIVLSPYWVSYPEM-VRFAGGV--------------------------- 138 (385)
T ss_dssp HHHHC-----CT----------------TCEEEEEESCCTHHHHH-HHHTTCE---------------------------
T ss_pred HHHhc-----CC----------------CCEEEEcCCCchhHHHH-HHHcCCE---------------------------
Confidence 98761 11 24788888888763321 1111100
Q ss_pred cceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCc
Q 005009 558 SKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGG 634 (719)
Q Consensus 558 ~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA-vIvEPViqg~gG 634 (719)
...++.. +.| . -| .+.+++.+. .++.+ ++..|- .-.|
T Consensus 139 -~~~v~~~~~~~~------------~---------~d--------~~~l~~~l~--------~~~~~v~~~~p~--NPtG 178 (385)
T 1b5p_A 139 -VVEVETLPEEGF------------V---------PD--------PERVRRAIT--------PRTKALVVNSPN--NPTG 178 (385)
T ss_dssp -EEEEECCGGGTT------------C---------CC--------HHHHHTTCC--------TTEEEEEEESSC--TTTC
T ss_pred -EEEeecCcccCC------------C---------CC--------HHHHHHhcC--------CCCEEEEEeCCC--CCCC
Confidence 0111111 000 0 01 244554443 23444 445673 4445
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccC-CCccchheeEeCHHHHhhh
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
.+. |.+.+++|.++|++||+++|+||++..|...|.......+.-..+++ +++|.+| .| +.+|++++++++++.+
T Consensus 179 ~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l 256 (385)
T 1b5p_A 179 AVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAM 256 (385)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred CCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcc-cceEEEEeCHHHHHHH
Confidence 443 78999999999999999999999998775444322222221122343 7899998 68 7899999999987765
Q ss_pred c
Q 005009 712 V 712 (719)
Q Consensus 712 ~ 712 (719)
.
T Consensus 257 ~ 257 (385)
T 1b5p_A 257 A 257 (385)
T ss_dssp H
T ss_pred H
Confidence 3
No 198
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=98.84 E-value=1.1e-08 Score=111.25 Aligned_cols=217 Identities=12% Similarity=0.040 Sum_probs=126.8
Q ss_pred eeeeccccccccCCC-CCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhcc-CCCC----CCeEEE--eCChH
Q 005009 400 QQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV-GKGW----ASRAYF--SDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lG-H~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~-~~~~----~~rv~f--~~SGs 471 (719)
.+|||.+|. +++ .+ +|.+.++++++.....+... ...-..+|.+.++++. +... -+++.+ +++|+
T Consensus 42 ~~i~l~~g~---~~d~~~-~~~v~~a~~~a~~~~~~~y~---~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ 114 (409)
T 4eu1_A 42 RKVNLSIGV---YRDDAD-QPFVLECVKQATLGTNMDYA---PVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGT 114 (409)
T ss_dssp SCEECCCSS---CCCTTS-CCCCCHHHHTCCCCSCCCCC---CTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHH
T ss_pred CceeeeeeE---EECCCC-CEeecHHHHhcCccccccCC---CCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccch
Confidence 577877643 333 34 78899999887432222111 1111235555555543 2110 145644 89999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+|++.+..++ +.+... ..+|+....+|++.... +...|..
T Consensus 115 ga~~~~~~~~-~~~~~~-----------------gd~Vlv~~p~y~~~~~~-~~~~g~~--------------------- 154 (409)
T 4eu1_A 115 GALRIGGDLL-NRFVAN-----------------CNRIYGPDVGYPNHESI-FAKAGME--------------------- 154 (409)
T ss_dssp HHHHHHHHHG-GGTSSS-----------------CCEEEEESSCCTHHHHH-HHHTTCE---------------------
T ss_pred HHHHHHHHHH-HHhcCC-----------------CCEEEEeCCCcHhHHHH-HHHcCCe---------------------
Confidence 9999998876 444321 14788888888764322 2222210
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVH 630 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViq 630 (719)
.+.+| ..+.+ .+ .-| .+.+++.+.+ .+.+.+.+++ .| +
T Consensus 155 ---------~~~~~--------------~~~~~-~~--~~d--------~~~l~~~l~~-----~~~~~~~i~~~~p--~ 193 (409)
T 4eu1_A 155 ---------LTPYS--------------YYDPA-TK--GLN--------LAGMLECLDK-----APEGSVILVHACA--H 193 (409)
T ss_dssp ---------EEEEC--------------CEETT-TT--EEC--------HHHHHHHHHH-----SCTTCEEEEESSS--C
T ss_pred ---------EEEEE--------------eecCc-CC--cCc--------HHHHHHHHHh-----CCCCcEEEEECCC--C
Confidence 11111 00000 00 001 3567777763 1233445554 56 5
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---cccccc-cCCCccee---eehhccC-CCccchhee-
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADL-LGCVPDIA---CYGKLLT-GGVIPLAAT- 701 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~-~gv~PDIv---tlgK~Lg-gG~~Plsav- 701 (719)
.-.|.+. +.+.+++|.++|++||+++|+||++.+|+..+. .+.... .+..++++ +++|.+| .| +.+|++
T Consensus 194 NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~riG~~~ 271 (409)
T 4eu1_A 194 NPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYG-HRCGALH 271 (409)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGG-GCCEEEE
T ss_pred CCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCcc-CCceEEE
Confidence 6566544 788899999999999999999999999877662 233332 35567765 7999998 68 688984
Q ss_pred --EeCHH
Q 005009 702 --LATNA 706 (719)
Q Consensus 702 --l~~~~ 706 (719)
+.+++
T Consensus 272 ~v~~~~~ 278 (409)
T 4eu1_A 272 ISTASAE 278 (409)
T ss_dssp EECSSHH
T ss_pred EEeCCHH
Confidence 66677
No 199
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=98.82 E-value=8.7e-08 Score=100.71 Aligned_cols=205 Identities=9% Similarity=0.079 Sum_probs=132.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
++||+.++. +++| - +|++.+|+.++++.+.. +..+...+|.++|++.++.. .+.++|++++++|+..+++
T Consensus 17 ~~i~l~~n~--~~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 17 QAVCLAFNE--NPEA-V-EPRVQAAIAAAAARINR-----YPFDAEPRVMRKLAEHFSCP-EDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCEECSSCC--CCSC-C-CHHHHHHHHHHGGGTTS-----CCTTHHHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred CceEeeCCC--CCCC-C-CHHHHHHHHHhhhhhcc-----CCCCchHHHHHHHHHHhCcC-HHHEEEeCCHHHHHHHHHH
Confidence 789988854 4566 4 79999999998876432 23456778889999887643 3589999999999998887
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.. .| .+|+..+.+|++.... +...|.. .
T Consensus 87 ~~-------~g----------------d~vl~~~p~~~~~~~~-~~~~g~~----------------------------~ 114 (337)
T 3p1t_A 87 EF-------SS----------------MRFVTAWPGFDGYRAR-IAVSGLR----------------------------H 114 (337)
T ss_dssp HS-------TT----------------SEEEEESSSCSHHHHH-HTTSCCE----------------------------E
T ss_pred hc-------CC----------------CeEEEeCCCcHHHHHH-HHHcCCE----------------------------E
Confidence 64 12 2688888888874322 1111100 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++..+.+. .| .+.+++. .+..++++.-. +...|.+.+
T Consensus 115 ~~v~~~~~~~-----------~d------------------~~~l~~~----------~~~~~v~i~~p-~nptG~~~~- 153 (337)
T 3p1t_A 115 FEIGLTDDLL-----------LD------------------PNDLAQV----------SRDDCVVLANP-SNPTGQALS- 153 (337)
T ss_dssp EEECBCTTSS-----------BC------------------HHHHTTC----------CTTEEEEEESS-CTTTCCCCC-
T ss_pred EEecCCCCCC-----------CC------------------HHHHHhh----------cCCCEEEEeCC-CCCCCCCCC-
Confidence 1111111000 01 1223211 12345666554 677888887
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
.+++.++|+++++ +|+||++.+|+..+.... ...+..--+.+++|.+| .| +.+|.+++++++.+.+..
T Consensus 154 ---~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~-~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~l~~ 222 (337)
T 3p1t_A 154 ---AGELDQLRQRAGK-LLIDETYVDYSSFRARGL-AYGENELVFRSFSKSYGLAG-LRLGALFGPSELIAAMKR 222 (337)
T ss_dssp ---HHHHHHHHHHCSE-EEEECTTGGGSSCSSSCC-CCBTTEEEEEESSSTTCCTT-TCCEEEECCHHHHHHHHT
T ss_pred ---HHHHHHHHHhCCc-EEEECCChhhcccccccc-ccCCCEEEEeeCchhccCcc-hheEEEEeCHHHHHHHHh
Confidence 7789999999997 666999998876554221 11111112337899998 78 689999999999888754
No 200
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=98.82 E-value=4.5e-08 Score=107.28 Aligned_cols=169 Identities=8% Similarity=-0.035 Sum_probs=115.6
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
...+...+|.++|+++.+. +.+++++||++|+..+++... +. ...||.....|++.
T Consensus 59 ~~~~~~~~l~~~ia~~~g~---~~~i~~~~g~~ai~~~~~~l~-----~~----------------gd~Vl~~~~~y~~~ 114 (404)
T 1e5e_A 59 LGNPTVSNLEGKIAFLEKT---EACVATSSGMGAIAATVLTIL-----KA----------------GDHLISDECLYGCT 114 (404)
T ss_dssp TCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEESCCCHHH
T ss_pred CcChHHHHHHHHHHHHhCC---CcEEEeCChHHHHHHHHHHHh-----CC----------------CCEEEEeCCCchhH
Confidence 3467777899999998873 588999999999999998651 11 13688888877763
Q ss_pred ccc---cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhH
Q 005009 520 TLG---AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (719)
Q Consensus 520 t~g---alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~ 596 (719)
... .+...| ...+.+| .+|
T Consensus 115 ~~~~~~~~~~~g------------------------------~~~~~v~--------------~~d-------------- 136 (404)
T 1e5e_A 115 HALFEHALTKFG------------------------------IQVDFIN--------------TAI-------------- 136 (404)
T ss_dssp HHHHHTHHHHTT------------------------------CEEEEEC--------------TTS--------------
T ss_pred HHHHHHHHHHcC------------------------------CEEEEEC--------------CCC--------------
Confidence 220 111111 0011111 111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHh-cCCcEEEeccccCccccCccccc
Q 005009 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 597 ~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k-~gilLI~DEVqTGfGRtG~~~a~ 675 (719)
.+.+++.+. .++.+|++|.. +...|.+.+ +++|.++|++ ||+++|+||+++.+.. ...+
T Consensus 137 ----~~~l~~~i~--------~~t~~v~l~~p-~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~-~~~~-- 196 (404)
T 1e5e_A 137 ----PGEVKKHMK--------PNTKIVYFETP-ANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI-TNPV-- 196 (404)
T ss_dssp ----TTHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT-CCGG--
T ss_pred ----HHHHHHhcC--------CCCcEEEEECC-CCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh-CCcc--
Confidence 134555553 35789999987 888898886 9999999999 9999999999986532 2222
Q ss_pred cccCCCccee--eehhccCCCccch-heeEeCHHHHh-hhcC
Q 005009 676 DLLGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFD-SFVG 713 (719)
Q Consensus 676 e~~gv~PDIv--tlgK~LggG~~Pl-savl~~~~i~~-~~~~ 713 (719)
.+ ..|++ +++|.+++.-.++ |++++++++++ .+..
T Consensus 197 -~~--~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~ 235 (404)
T 1e5e_A 197 -DF--GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV 235 (404)
T ss_dssp -GG--TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT
T ss_pred -cc--CCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHH
Confidence 13 36766 6999998633687 99999999887 6643
No 201
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=98.80 E-value=1.9e-08 Score=110.39 Aligned_cols=169 Identities=9% Similarity=0.037 Sum_probs=112.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +..++++||++|+..+++ .. +. ...||+.+..|||.
T Consensus 64 ~~~p~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~-l~-----~~----------------gd~Vl~~~~~y~~~ 118 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGA---KYCLAFASGLAATVTITH-LL-----KA----------------GDQIICMDDVYGGT 118 (403)
T ss_dssp --CHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHT-TS-----CT----------------TCEEEEESSCCHHH
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHH-Hh-----CC----------------CCEEEEeCCCcchH
Confidence 3467778999999998874 467788899999999888 41 11 24789999988884
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......+.. . . |.....+| .+|
T Consensus 119 ~~~~~~~~~-----~---------~-------------G~~v~~v~--------------~~d----------------- 140 (403)
T 3cog_A 119 NRYFRQVAS-----E---------F-------------GLKISFVD--------------CSK----------------- 140 (403)
T ss_dssp HHHHHHTGG-----G---------G-------------TCEEEEEC--------------TTS-----------------
T ss_pred HHHHHHHHH-----H---------c-------------CCEEEEEC--------------CCC-----------------
Confidence 221110100 0 0 00001111 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC-CcEEEeccccCccccCcccccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g-ilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++.+|++|.. +...|.+.+ +++|.++|++|| +++|+||+++++. .+.. +
T Consensus 141 -~~~l~~~i~--------~~t~~v~~~~p-~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~-~~~~-----~ 200 (403)
T 3cog_A 141 -IKLLEAAIT--------PETKLVWIETP-TNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPY-FQRP-----L 200 (403)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTT-TCCT-----T
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcccc-cCCc-----c
Confidence 245666653 36789999987 888898886 999999999999 9999999998642 2222 2
Q ss_pred CCCccee--eehhccCC-CccchheeEeC-HHHHhhh
Q 005009 679 GCVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 679 gv~PDIv--tlgK~Lgg-G~~Plsavl~~-~~i~~~~ 711 (719)
+..+|++ +++|.++| |-..+|+++++ +++.+.+
T Consensus 201 ~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l 237 (403)
T 3cog_A 201 ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRL 237 (403)
T ss_dssp TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHH
T ss_pred ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHH
Confidence 3468988 78999985 32567888885 7776654
No 202
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=98.80 E-value=3e-09 Score=116.74 Aligned_cols=102 Identities=8% Similarity=0.061 Sum_probs=76.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHH-hcCCcEEEecccc--CccccCccc-cc--
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ-NRKIPVIFDEVFT--GFWRLGVET-TA-- 675 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~-k~gilLI~DEVqT--GfGRtG~~~-a~-- 675 (719)
+.+++.+.+ .++.+|++.|..+.-.|. ..|.+++++|.++|+ +||+++|+||++. +|+..|..+ ..
T Consensus 168 ~~l~~~l~~-------~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 239 (422)
T 3d6k_A 168 GVVRELVKD-------PQVKGMWTVPVFGNPTGV-TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIE 239 (422)
T ss_dssp HHHHHHHTS-------TTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHH
T ss_pred HHHHHHHhc-------CCCeEEEEcCCCCCCCCC-CCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhh
Confidence 566777642 357788877754565676 458999999999999 9999999999996 576666322 22
Q ss_pred -----cccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 676 -----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 676 -----e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+..+...++.+++|.++.| +++|++++++++++.+.
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~ 280 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYA 280 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHH
T ss_pred HhhccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHH
Confidence 2344556677999997778 79999999999988764
No 203
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=98.78 E-value=1.9e-07 Score=95.68 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=65.0
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCC----HHH
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN----EVP 296 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~----~~~ 296 (719)
+|+|||++.+|+. .....++...+ .||+|+.....++.++...++.++..+.++.|+|+|++.... ...
T Consensus 111 yD~viiD~~~~~~------~~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~ 183 (263)
T 1hyq_A 111 TDILLLDAPAGLE------RSAVIAIAAAQ-ELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIEMAKNE 183 (263)
T ss_dssp CSEEEEECCSSSS------HHHHHHHHHSS-EEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHHHHHHH
T ss_pred CCEEEEeCCCCCC------hHHHHHHHHCC-EEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccccchHHH
Confidence 9999999987643 22344444444 788999988889999999999998888899999999984432 234
Q ss_pred HHHhhcCCCcEEe-cCCCCC
Q 005009 297 LMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 297 l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.+.+ ++|+++ ||+.+.
T Consensus 184 ~~~~~--~~~~~~~Ip~~~~ 201 (263)
T 1hyq_A 184 IEAIL--EAKVIGLIPEDPE 201 (263)
T ss_dssp HHHHT--TSCEEEEEECCHH
T ss_pred HHHHh--CCCeEEECCCCHH
Confidence 44445 899999 998654
No 204
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=98.77 E-value=8.8e-08 Score=105.76 Aligned_cols=206 Identities=13% Similarity=0.007 Sum_probs=121.9
Q ss_pred CHHHHHHHHHhhhh---cccccCCCCCChHHHHHHHHHHhccCCCCCCeEEE---eCChHHHHHHHHHHHHHHhhccccc
Q 005009 418 QIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 418 hP~V~~Av~~q~~~---~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f---~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
+++|.+|+.+..-. +.......+......+|.++++++.+. +.+++ ++||++|+..+++..+ +.|
T Consensus 31 ~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~---e~alv~p~~~sGt~Ai~~al~all-----~~G- 101 (409)
T 3jzl_A 31 QAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT---EAALVRPQIISGTHAISTVLFGIL-----RPD- 101 (409)
T ss_dssp HHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTSCSHHHHHHHHHHHHC-----CTT-
T ss_pred HHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC---CcEEEECCCccHHHHHHHHHHHhc-----CCC-
Confidence 77888998876422 222222234455677899999999874 45555 8999999999988651 122
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhc
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (719)
..||+.++..|+.+...+.+++.. ... ....+. ....++....+
T Consensus 102 ---------------D~Vl~~~~~~y~~~~~~~~~~g~~--~~~-----l~~~G~-----------~~~~v~~~~~g--- 145 (409)
T 3jzl_A 102 ---------------DELLYITGQPYDTLEEIVGIRKQG--QGS-----LKDFHI-----------GYSSVPLLENG--- 145 (409)
T ss_dssp ---------------CEEEECSSSCCTTHHHHHTSSSSS--SSC-----TGGGTC-----------EEEECCCCTTS---
T ss_pred ---------------CEEEEeCCCCcHhHHHHHhcccch--hhH-----HHHcCC-----------EEEEeCCCCCC---
Confidence 367777634444443222222210 000 000000 00111110000
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCccccCCHHHHHHHH
Q 005009 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 572 ~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fl~~Lr 647 (719)
..| .+.+++.+. .+..+|++|. . .+..|.+.+ +++|.
T Consensus 146 ------------------~~d--------~e~l~~ai~--------~~tklV~i~~s~g~p-~nptg~v~~----l~~I~ 186 (409)
T 3jzl_A 146 ------------------DVD--------FPRIAKKMT--------PKTKMIGIQRSRGYA-DRPSFTIEK----IKEMI 186 (409)
T ss_dssp ------------------CCC--------HHHHHHHCC--------TTEEEEEEECSCTTS-SSCCCCHHH----HHHHH
T ss_pred ------------------CcC--------HHHHHHhcc--------CCCeEEEEECCCCCC-CCCcCcccc----HHHHH
Confidence 001 255666664 3578999998 6 666676654 99999
Q ss_pred HHHHh--cCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccc-hheeEeCHHHHhhhc
Q 005009 648 KECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFV 712 (719)
Q Consensus 648 ~Lc~k--~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~P-lsavl~~~~i~~~~~ 712 (719)
++|++ ||+++|+||++.-+ ..+ .+......||+ +++|.+||+..| .|.+++++++++.+.
T Consensus 187 ~la~~~~~~~~livD~a~~~~-~~~----~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 251 (409)
T 3jzl_A 187 VFVKNINPEVIVFVDNCYGEF-VEY----QEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCG 251 (409)
T ss_dssp HHHHHHCTTCEEEEECTTCTT-TSS----CCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHhhCCCCEEEEeCCcccc-ccc----CCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHH
Confidence 99999 99999999998522 211 11112345887 689999875345 467889999888764
No 205
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=98.75 E-value=5.1e-08 Score=108.12 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---ccccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~~ 678 (719)
+.+++.+.+ .+.+...+++... +...|.+ .+.+.+++|.++|++||+++|+||++.+|+..+. .+....+
T Consensus 190 e~l~~~l~~-----~~~~~~~v~~~~p-~NPtG~~-~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 262 (448)
T 3meb_A 190 SNTKKDIQS-----APEKSIFLFHACA-HNPSGID-FTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMF 262 (448)
T ss_dssp HHHHHHHHH-----SCTTCEEEEESSS-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHH
T ss_pred HHHHHHHHh-----CCCCcEEEEeCCC-CCCCCcC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHH
Confidence 556677763 2233444444432 5666765 4788899999999999999999999999977652 2333322
Q ss_pred -CCCcc---eeeehhccC-CCccchhee--Ee
Q 005009 679 -GCVPD---IACYGKLLT-GGVIPLAAT--LA 703 (719)
Q Consensus 679 -gv~PD---IvtlgK~Lg-gG~~Plsav--l~ 703 (719)
+..++ +.+++|.+| .| +.+|++ ++
T Consensus 263 ~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~v~ 293 (448)
T 3meb_A 263 VDAGVEVLVAQSFSKNFGLYG-ERIGCLHVVH 293 (448)
T ss_dssp HHTTCCEEEEEECTTTSCCGG-GCCEEEEEEC
T ss_pred hhcCCcEEEEecccccCCCcc-ccceeeeeee
Confidence 23455 347999998 57 688887 55
No 206
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=98.74 E-value=4.4e-08 Score=108.79 Aligned_cols=164 Identities=14% Similarity=0.066 Sum_probs=108.5
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.+++++||++|+..|++... +. ...||+.+..|+|.
T Consensus 79 ~~~p~~~~le~~lA~l~g~---~~~v~~~sG~~Ai~~al~al~-----~~----------------Gd~Vi~~~~~y~~~ 134 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLTGA---LGVLALGSGMAAISTAILTLA-----RA----------------GDSVVTTDRLFGHT 134 (430)
T ss_dssp -CCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCCHHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHHh-----CC----------------CCEEEEcCCCchhH
Confidence 4578889999999999874 568899999999999998761 11 24788888888763
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......... . . |.....+| .+|
T Consensus 135 ~~~~~~~~~-----~---------~-------------G~~~~~v~--------------~~d----------------- 156 (430)
T 3ri6_A 135 LSLFQKTLP-----S---------F-------------GIEVRFVD--------------VMD----------------- 156 (430)
T ss_dssp HHHHHTHHH-----H---------T-------------TCEEEEEC--------------TTC-----------------
T ss_pred HHHHHHHHH-----H---------c-------------CCEEEEeC--------------CCC-----------------
Confidence 321100000 0 0 00001111 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++.+|++|.. ++..|.+.+ +++|.++|++||++||+||+++ +|.++....+|
T Consensus 157 -~~~l~~ai~--------~~t~~v~~e~p-~NptG~~~d----l~~i~~la~~~g~~livD~a~~----~~~~~~~~~~g 218 (430)
T 3ri6_A 157 -SLAVEHACD--------ETTKLLFLETI-SNPQLQVAD----LEALSKVVHAKGIPLVVDTTMT----PPYLLEAKRLG 218 (430)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTTTCCEEEECTTS----CTTTCCGGGGT
T ss_pred -HHHHHHhhC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc----ccccCChHHcC
Confidence 245666664 36789999987 888898887 8999999999999999999996 34444444556
Q ss_pred CCcceeeehhccCCCccchheeEe
Q 005009 680 CVPDIACYGKLLTGGVIPLAATLA 703 (719)
Q Consensus 680 v~PDIvtlgK~LggG~~Plsavl~ 703 (719)
....+.+++|.++|.-..++++++
T Consensus 219 ~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 219 VDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp CSEEEEECCCEEETTEEECCEEEE
T ss_pred CEEEEECCcccccCCCCceEEEEE
Confidence 544444678999873245555555
No 207
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=98.74 E-value=2.7e-08 Score=107.89 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=62.5
Q ss_pred cEEE-EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCc
Q 005009 619 CIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGV 695 (719)
Q Consensus 619 ~iAA-vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~ 695 (719)
++.+ |+++.. ++.+|. +...+++|.++|++||+++|+||++.-+ ..|...........+|+++ ++|.|+|
T Consensus 140 ~~~~~v~~~~p-~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~di~~~S~sK~l~g-- 212 (374)
T 2aeu_A 140 KDTLVIITGST-MDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG-- 212 (374)
T ss_dssp TTEEEEEECBC-TTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS--
T ss_pred CccEEEEEccC-CCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCCcEEEecCcccccC--
Confidence 5678 999986 888785 5677999999999999999999987432 2111110001123468884 9999875
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
..+|.+++++++++.+.
T Consensus 213 ~~~G~~~~~~~~~~~l~ 229 (374)
T 2aeu_A 213 PRGGLLAGKKELVDKIY 229 (374)
T ss_dssp CSCEEEEEEHHHHHHHH
T ss_pred cceEEEEECHHHHHHHH
Confidence 37888999999887653
No 208
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=98.72 E-value=1.3e-07 Score=106.55 Aligned_cols=100 Identities=10% Similarity=0.092 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|.+.. ..+.++++|++.-. ....|.+.+ +++|.++|++||++|++|+++.|+......+.....|+
T Consensus 230 ~~L~~~i~~~~--~~g~~~~~V~~~~~-~~~tG~i~~----l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~ 302 (504)
T 2okj_A 230 ADFEAKILEAK--QKGYVPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 302 (504)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEECBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG
T ss_pred HHHHHHHHHHH--HCCCCceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcc
Confidence 44555554210 11335778888664 666788776 99999999999999999999988754433333333455
Q ss_pred Ccceeeeh--hccCCCccchheeEeCH-HHHh
Q 005009 681 VPDIACYG--KLLTGGVIPLAATLATN-AVFD 709 (719)
Q Consensus 681 ~PDIvtlg--K~LggG~~Plsavl~~~-~i~~ 709 (719)
.+|+++++ |.+++. +++|++++++ +++.
T Consensus 303 ~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~ 333 (504)
T 2okj_A 303 RANSVTWNPHKMMGVL-LQCSAILVKEKGILQ 333 (504)
T ss_dssp GCSEEEECTTSTTCCC-SCCEEEEESSTTHHH
T ss_pred cCCEEEECchhhcCCC-cceEEEEEECHHHHH
Confidence 68999875 998877 5899999987 4654
No 209
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=98.71 E-value=6e-07 Score=90.65 Aligned_cols=101 Identities=8% Similarity=0.052 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHH
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (719)
+..+.+.+.+..+... +|+|||.+.+++. .....+....+ -+|+|+.....++..+...+
T Consensus 103 ~~~~~l~~~l~~l~~~-------------yD~viiD~p~~~~------~~~~~~l~~ad-~viiv~~~~~~~~~~~~~~~ 162 (245)
T 3ea0_A 103 IEPERVSDLIHIAASF-------------YDYIIVDFGASID------HVGVWVLEHLD-ELCIVTTPSLQSLRRAGQLL 162 (245)
T ss_dssp CCHHHHHHHHHHHHHH-------------CSEEEEEEESSCC------TTHHHHGGGCS-EEEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh-------------CCEEEEeCCCCCc------hHHHHHHHHCC-EEEEEecCcHHHHHHHHHHH
Confidence 3455666666665543 9999999977552 12333444433 37788888888899999999
Q ss_pred HHHHhCC--CcEEEEEEccCC---CCCHHHHHHhhcCCCcEEe-cCCCC
Q 005009 272 ESLKLRG--YDVVAVVFEDHG---LVNEVPLMSYLRNRVPVLV-LPPLP 314 (719)
Q Consensus 272 ~~l~~~~--~~v~gvi~N~~~---~~~~~~l~~~~~~~~pvlg-lP~~~ 314 (719)
+.++..+ ....|+|+|++. ....+.+++.+ +.|+++ +|+..
T Consensus 163 ~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~--~~~v~~~ip~~~ 209 (245)
T 3ea0_A 163 KLCKEFEKPISRIEIILNRADTNSRITSDEIEKVI--GRPISKRIPQDE 209 (245)
T ss_dssp HHHHTCSSCCSCEEEEEESTTSCTTSCHHHHHHHH--TSCEEEEECCCH
T ss_pred HHHHHhCCCccceEEEEecCCCCCCCCHHHHHHHh--CCCeEEECCCCh
Confidence 9998776 567999999983 23456777777 899999 88875
No 210
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.69 E-value=1.3e-07 Score=92.76 Aligned_cols=87 Identities=9% Similarity=-0.022 Sum_probs=58.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhC-----CCcEEEEEEccCCCC--
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR-----GYDVVAVVFEDHGLV-- 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~-----~~~v~gvi~N~~~~~-- 292 (719)
.+|++||++.+++ +.....+....+. +|+|+.....+ ..+...++.++.. +.++ |+|+|++...
T Consensus 75 ~yD~viiD~~~~~------~~~~~~~l~~ad~-viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~~~ 145 (206)
T 4dzz_A 75 DYDFAIVDGAGSL------SVITSAAVMVSDL-VIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEMAT 145 (206)
T ss_dssp TSSEEEEECCSSS------SHHHHHHHHHCSE-EEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTTEE
T ss_pred CCCEEEEECCCCC------CHHHHHHHHHCCE-EEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCCch
Confidence 3999999997765 2233444444443 78888888777 8888888888754 3566 9999998422
Q ss_pred CHHHHHHhhcC-CCcEE-e-cCCCCC
Q 005009 293 NEVPLMSYLRN-RVPVL-V-LPPLPQ 315 (719)
Q Consensus 293 ~~~~l~~~~~~-~~pvl-g-lP~~~~ 315 (719)
....+++.++. +.|++ + ||..+.
T Consensus 146 ~~~~~~~~l~~~~~~vl~~~Ip~~~~ 171 (206)
T 4dzz_A 146 MLNVLKESIKDTGVKAFRTAITQRQV 171 (206)
T ss_dssp EEHHHHHHHHHHTCCBCSSCCBCCHH
T ss_pred HHHHHHHHHHHcCCceeeccccccHH
Confidence 22334444433 78888 6 776553
No 211
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=98.68 E-value=7.8e-07 Score=91.66 Aligned_cols=89 Identities=8% Similarity=-0.075 Sum_probs=63.7
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC---------
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG--------- 290 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~--------- 290 (719)
.+|+|||++.+|+..+. ...++...--.+|+|+.....++.++..+++.++..++++.|+|+|++.
T Consensus 128 ~yD~ViID~pp~~~~~~-----~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAP-----LTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp SCSEEEEECCSSSSSHH-----HHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCE
T ss_pred CCCEEEEECcCCCchHH-----HHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccc
Confidence 49999999988753221 1111111122488888888999999999999999889999999999862
Q ss_pred -----CCCHHHHHHhhcCCCcEEe-cCCCCC
Q 005009 291 -----LVNEVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 291 -----~~~~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
....+.+.+.+ ++|+++ ||+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~--g~~~~~~Ip~~~~ 231 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKY--NIGFFTSIPIEEE 231 (262)
T ss_dssp ECTTCCCCHHHHHHHT--TCSEEEECCBCHH
T ss_pred cccccccHHHHHHHHc--CCCeEEEeeCchH
Confidence 12345566666 899999 887653
No 212
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=98.60 E-value=8.4e-07 Score=90.39 Aligned_cols=103 Identities=9% Similarity=0.056 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHh-ccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHH
Q 005009 191 VVGDSKVIETLGKCLR-DGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269 (719)
Q Consensus 191 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~ 269 (719)
.+..+.+.+.+..+.. . +|+|||.+.+|+. .....+... ---||+|+.....++.++..
T Consensus 96 ~~~~~~~~~~l~~l~~~~-------------yD~viiD~p~~~~------~~~~~~l~~-ad~vi~v~~~~~~s~~~~~~ 155 (260)
T 3q9l_A 96 ALTREGVAKVLDDLKAMD-------------FEFIVCDSPAGIE------TGALMALYF-ADEAIITTNPEVSSVRDSDR 155 (260)
T ss_dssp SSCHHHHHHHHHHHHHTT-------------CSEEEEECCSSSS------HHHHHHHHT-CSEEEEEECSSHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhccC-------------CCEEEEcCCCCCC------HHHHHHHHh-CCEEEEEecCChhHHHHHHH
Confidence 3456667666666655 4 9999999977542 122233332 23488999999999999999
Q ss_pred HHHHHHhCCC--------cEEEEEEccCC------CC--CHHHHHHhhcCCCcEEe-cCCCCC
Q 005009 270 AYESLKLRGY--------DVVAVVFEDHG------LV--NEVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 270 ~~~~l~~~~~--------~v~gvi~N~~~------~~--~~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.++.++..+. ...|+|+|++. .. ..+.+.+.+ ++|+++ ||+.+.
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~ 216 (260)
T 3q9l_A 156 ILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEIL--RIKLVGVIPEDQS 216 (260)
T ss_dssp HHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHH--CSEEEEEEECCHH
T ss_pred HHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHh--CCceEEecCCChh
Confidence 9999886542 47899999972 11 236677777 899999 998764
No 213
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=98.60 E-value=3.8e-07 Score=101.28 Aligned_cols=205 Identities=12% Similarity=0.029 Sum_probs=119.6
Q ss_pred CHHHHHHHHHhhhh---cccccCCCCCChHHHHHHHHHHhccCCCCCCeEEE---eCChHHHHHHHHHHHHHHhhccccc
Q 005009 418 QIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 418 hP~V~~Av~~q~~~---~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f---~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
+++|.+|+.+.... +.......+...-..+|.++++++.+. +.+++ ++||++|+..++...+ +.
T Consensus 46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~---e~alv~p~~~sGt~A~~~al~all-----~p-- 115 (427)
T 3hvy_A 46 QLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT---ESAFVRPHFVNGTHAIGAALFGNL-----RP-- 115 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTCCSHHHHHHHHHHHTC-----CT--
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC---CceEEeCCCCcHHHHHHHHHHHhc-----CC--
Confidence 78899998875432 111111223345577899999999884 45555 8999999998887551 22
Q ss_pred cccccCCCccccCcceEEEEEe-CCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhh
Q 005009 492 LVDFLGKDTTEKCIELKVLALK-GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLY 569 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~-~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~ 569 (719)
...||+.+ ..|+|.. .....++.. +.. ..... |.....+| +..
T Consensus 116 --------------GD~Vl~~~~~~y~~~~-~~~g~~~~~-~~~-----~l~~~-------------G~~~~~v~~~~~- 160 (427)
T 3hvy_A 116 --------------NDTMMSICGMPYDTLH-DIIGMDDSK-KVG-----SLREY-------------GVKYKMVDLKDG- 160 (427)
T ss_dssp --------------TCEEEECSSSCCGGGH-HHHTCCTTC-CSC-----CTGGG-------------TCEEEECCCBTT-
T ss_pred --------------CCEEEEeCCCCchhHH-HHhccccch-hhh-----HHHHc-------------CCEEEEecCCCC-
Confidence 23677777 5555532 111111000 000 00000 11111111 000
Q ss_pred hcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCccccCCHHHHHH
Q 005009 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRI 645 (719)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fl~~ 645 (719)
..| .+.+++.+.+ ..++.+|++|+ . .+..|.+. -+++
T Consensus 161 --------------------~~d--------~e~l~~~i~~------~~~tklV~i~~s~gyp-~nptg~v~----dl~~ 201 (427)
T 3hvy_A 161 --------------------KVD--------INTVKEELKK------DDSIKLIHIQRSTGYG-WRKSLRIA----EIAE 201 (427)
T ss_dssp --------------------BCC--------HHHHHHHHHH------CTTEEEEEEESSCCSS-SSCCCCHH----HHHH
T ss_pred --------------------CcC--------HHHHHHHhhC------CCCCEEEEEECCCCCC-CCccccHH----HHHH
Confidence 001 2567777752 13678999999 5 55555544 4999
Q ss_pred HHHHHHh--cCCcEEEeccccCccc-cCccccccccCCCccee--eehhccCCCccch-heeEeCHHHHhhhc
Q 005009 646 LVKECQN--RKIPVIFDEVFTGFWR-LGVETTADLLGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSFV 712 (719)
Q Consensus 646 Lr~Lc~k--~gilLI~DEVqTGfGR-tG~~~a~e~~gv~PDIv--tlgK~LggG~~Pl-savl~~~~i~~~~~ 712 (719)
|.++|++ ||+++|+||++..+ . .... .....|++ +++|.+||+..|. |.+++++++.+.+.
T Consensus 202 i~~ia~~~~~g~~livD~a~~~~-~~~~~p-----~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~ 268 (427)
T 3hvy_A 202 IIKSIREVNENVIVFVDNCYGEF-VEEKEP-----TDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQAT 268 (427)
T ss_dssp HHHHHHHHCSSSEEEEECTTCTT-TSSSCG-----GGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCcccc-ccCCCC-----cccCCeEEEECCcccccccccceEEEEEECHHHHHHHH
Confidence 9999999 99999999998532 2 1111 11235877 6899998753454 66788888887764
No 214
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=98.58 E-value=1.4e-06 Score=91.63 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHH
Q 005009 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (719)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (719)
.+.+.+.+..+.+. +|+|||.+..++.+ .....+++..+. +|+|+......+..+..+++.
T Consensus 188 ~~~l~~ll~~l~~~-------------yD~VIIDtpp~~~~-----~da~~l~~~aD~-vllVv~~~~~~~~~~~~~~~~ 248 (286)
T 3la6_A 188 SERFAELVNWASKN-------------YDLVLIDTPPILAV-----TDAAIVGRHVGT-TLMVARYAVNTLKEVETSLSR 248 (286)
T ss_dssp SHHHHHHHHHHHHH-------------CSEEEEECCCTTTC-----THHHHHTTTCSE-EEEEEETTTSBHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-------------CCEEEEcCCCCcch-----HHHHHHHHHCCe-EEEEEeCCCCcHHHHHHHHHH
Confidence 35566666665544 99999999654322 223445555554 889999999999999999999
Q ss_pred HHhCCCcEEEEEEccCC
Q 005009 274 LKLRGYDVVAVVFEDHG 290 (719)
Q Consensus 274 l~~~~~~v~gvi~N~~~ 290 (719)
++..|.++.|+|+|++.
T Consensus 249 l~~~g~~~~GvVlN~v~ 265 (286)
T 3la6_A 249 FEQNGIPVKGVILNSIF 265 (286)
T ss_dssp HHHTTCCCCEEEEEEEC
T ss_pred HHhCCCCEEEEEEcCcc
Confidence 99999999999999983
No 215
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=98.57 E-value=8.9e-08 Score=101.22 Aligned_cols=191 Identities=8% Similarity=-0.058 Sum_probs=116.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCC--CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~--~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~ 495 (719)
+|++.+++.+.+........... ..+...++.++|++..+...-+.++|++||++|++.+++...
T Consensus 16 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~------------- 82 (362)
T 3ffr_A 16 YPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV------------- 82 (362)
T ss_dssp CTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC-------------
T ss_pred CHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc-------------
Confidence 78999888877765321110001 124456778888887754223579999999999999998761
Q ss_pred cCCCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccc
Q 005009 496 LGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (719)
Q Consensus 496 ~~~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (719)
++ +++.....+++.....+ ...|.. ...++.+..+
T Consensus 83 ---------~~-~~i~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------ 118 (362)
T 3ffr_A 83 ---------EK-KSFHCVNGSFSKRFYEFAGELGRE----------------------------AYKEEAAFGK------ 118 (362)
T ss_dssp ---------SS-EEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC------
T ss_pred ---------CC-cEEEEcCcHHHHHHHHHHHHhCCC----------------------------eEEEecCCCC------
Confidence 12 66777777776322111 111100 0111111111
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc-
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR- 653 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~- 653 (719)
..|. +.++ + ..++.+|++... +...|.+.+ +++|.++|++|
T Consensus 119 -----~~d~------------------~~l~--~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~p 160 (362)
T 3ffr_A 119 -----GFYP------------------ADIT--V--------PADAEIICLTHN-ETSSGVSMP----VEDINTFRDKNK 160 (362)
T ss_dssp -----CCCG------------------GGCC--C--------CTTCCEEEEESE-ETTTTEECC----HHHHTTSGGGST
T ss_pred -----CCCH------------------HHHh--c--------cCCccEEEEEcC-CCCcceeCC----HHHHHHHHHhCC
Confidence 0011 1222 1 235678888886 888898887 99999999999
Q ss_pred CCcEEEeccccCccccCccccccccCC-Ccceee--ehhccCCCccchheeEeCHHHHhhhc
Q 005009 654 KIPVIFDEVFTGFWRLGVETTADLLGC-VPDIAC--YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 654 gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|+++|+||+++.+... .++ ..|+++ ++|.++++ .-++.+++++++.+.+.
T Consensus 161 ~~~li~D~a~~~~~~~--------~~~~~~d~~~~s~~K~~~~~-~G~g~~~~~~~~~~~~~ 213 (362)
T 3ffr_A 161 DALIFVDAVSSLPYPK--------FDWTKIDSVFFSVQKCFGLP-AGLGVWILNDRVIEKSK 213 (362)
T ss_dssp TSEEEEECTTTTTSSC--------CCTTSCSEEEEETTSTTCCC-SCCEEEEEEHHHHHHHH
T ss_pred CCEEEEecccccCCcc--------cChhHCcEEEEecccccCCC-CceEEEEECHHHHHHhh
Confidence 9999999999632111 111 178885 45999843 23577889998876543
No 216
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=98.55 E-value=1.9e-06 Score=93.15 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---ccccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~~ 678 (719)
+.+++.+++ ...+..++++... +...|.+ .+.+.+++|.++|++||+++|.||++.+|+..+. .+....+
T Consensus 163 ~~l~~~l~~-----~~~~~~~v~i~~p-~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 235 (401)
T 7aat_A 163 TGAMEDISK-----IPEKSIILLHACA-HNPTGVD-PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHF 235 (401)
T ss_dssp HHHHHHHTT-----SCTTCEEEEESSS-CTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred HHHHHHHHh-----CCCCcEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHH
Confidence 345555653 1235567777765 7777775 4788999999999999999999999998876553 3333222
Q ss_pred -CCCcce---eeehhccC-CCccchheeEe---CHH
Q 005009 679 -GCVPDI---ACYGKLLT-GGVIPLAATLA---TNA 706 (719)
Q Consensus 679 -gv~PDI---vtlgK~Lg-gG~~Plsavl~---~~~ 706 (719)
+..+++ .+++|.+| .| +.+|++++ +++
T Consensus 236 ~~~~~~~i~~~S~sK~~~~~G-~RiG~l~~~~~~~~ 270 (401)
T 7aat_A 236 IEQGIDVVLSQSYAKNMGLYG-ERAGAFTVICRDAE 270 (401)
T ss_dssp HHTTCCCEEEEECTTTSCCGG-GCEEEEEEECSSHH
T ss_pred HhcCCcEEEEecCCccccccc-CceEEEEEEeCCHH
Confidence 334444 47999998 57 57888765 555
No 217
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=98.54 E-value=2e-06 Score=95.53 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCccccCCHHHHHHHHHHHHh--cCCcEEEeccccCccccCccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~~~a~ 675 (719)
+.+++.+.+ ..+..+|++|+ . .+..|.+.+ +++|.++|++ ||+++|+||++.-+.-.....
T Consensus 165 e~l~~~l~~------~~~tklV~i~~s~~~p-~nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~-- 231 (427)
T 3i16_A 165 EEIEKVLKE------DESITLVHIQRSTGYG-WRRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT-- 231 (427)
T ss_dssp HHHHHHHHT------CTTEEEEEEECSCCSS-SSCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG--
T ss_pred HHHHHHhhC------CCCCEEEEEEcCCCCC-CCCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc--
Confidence 567777752 14678999998 5 566665544 9999999999 999999999985321011111
Q ss_pred cccCCCccee--eehhccCCCccc-hheeEeCHHHHhhhcC
Q 005009 676 DLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFVG 713 (719)
Q Consensus 676 e~~gv~PDIv--tlgK~LggG~~P-lsavl~~~~i~~~~~~ 713 (719)
....||+ +++|.+||+.-| .|.+++++++.+.+..
T Consensus 232 ---~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~ 269 (427)
T 3i16_A 232 ---DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSY 269 (427)
T ss_dssp ---GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHH
T ss_pred ---ccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHH
Confidence 1235877 689999875334 4678889998887643
No 218
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=98.52 E-value=4.6e-07 Score=100.05 Aligned_cols=171 Identities=11% Similarity=0.038 Sum_probs=110.4
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|.++|+++.+. +.+++++||++|+..|++... +.| ..||+....|||
T Consensus 78 r~~~p~~~~le~~lA~l~g~---~~~i~~ssGt~Ai~~al~~l~-----~~G----------------d~Vi~~~~~y~~ 133 (415)
T 2fq6_A 78 RRGTLTHFSLQQAMCELEGG---AGCVLFPCGAAAVANSILAFI-----EQG----------------DHVLMTNTAYEP 133 (415)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTC-----CTT----------------CEEEEETTSCHH
T ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEeCCCchH
Confidence 34577888999999998874 467778999999999988541 122 378888888877
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
. ...+.-. .. . .+ .....+| .+|.
T Consensus 134 ~-~~~~~~~-l~---~---------~G-------------~~v~~v~--------------~~d~--------------- 157 (415)
T 2fq6_A 134 S-QDFCSKI-LS---K---------LG-------------VTTSWFD--------------PLIG--------------- 157 (415)
T ss_dssp H-HHHHHHT-GG---G---------GT-------------CEEEEEC--------------TTCG---------------
T ss_pred H-HHHHHHH-HH---H---------cC-------------cEEEEEC--------------CCCH---------------
Confidence 3 2221100 00 0 00 0000001 1121
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHh--cCCcEEEeccccCccccCcccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTAD 676 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~~~a~e 676 (719)
+.+++.|. .++.+|++|.. +...|.+.+ +++|.++|++ ||+++|+||+|.- +-.+..+
T Consensus 158 ---~~le~ai~--------~~tklV~~e~~-~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~-~~~~~p~--- 217 (415)
T 2fq6_A 158 ---ADIVKHLQ--------PNTKIVFLESP-GSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAA-GVLFKAL--- 217 (415)
T ss_dssp ---GGGGGGCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTT-TTSSCGG---
T ss_pred ---HHHHHhhc--------cCCcEEEEECC-CCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCcc-cccCCcc---
Confidence 23444442 25789999987 888898887 8999999999 9999999999952 1112212
Q ss_pred ccCCCccee--eehhccCC-CccchheeEeCHHHHhhh
Q 005009 677 LLGCVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 677 ~~gv~PDIv--tlgK~Lgg-G~~Plsavl~~~~i~~~~ 711 (719)
....|++ ++.|.+|+ |-...|++++++++++.+
T Consensus 218 --~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l 253 (415)
T 2fq6_A 218 --DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQL 253 (415)
T ss_dssp --GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHH
T ss_pred --ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHH
Confidence 2346888 68999986 323457888888776654
No 219
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=98.49 E-value=2.2e-06 Score=89.37 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=52.0
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (719)
+|+|||.+..++.+ .....+++..+ -+|+|+.....++.++..+++.++..+.++.|+|+|++.
T Consensus 192 yD~VIIDtpp~~~~-----~d~~~l~~~aD-~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNTV-----TDAQLFSKFTG-NVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTTC-----SHHHHHHHHHC-EEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEEC
T ss_pred CCEEEEeCCCCchH-----HHHHHHHHHCC-EEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence 99999999765432 22344555555 489999999999999999999999999999999999983
No 220
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=98.49 E-value=8.2e-07 Score=93.87 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHH
Q 005009 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (719)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (719)
+.+.+.+..+.+. +|+|||++..++.+ ..+.++...--.+|+|+.....++.++..+++.+
T Consensus 201 ~~l~~ll~~l~~~-------------yD~VIIDtpp~~~~------~d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l 261 (299)
T 3cio_A 201 DRMRQLLEWANDH-------------YDLVIVDTPPMLAV------SDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRL 261 (299)
T ss_dssp HHHHHHHHHHHHH-------------CSEEEEECCCTTTC------THHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------------CCEEEEcCCCCchh------HHHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHH
Confidence 4555555555544 99999999775432 2233333333468889998888999999999999
Q ss_pred HhCCCcEEEEEEccC
Q 005009 275 KLRGYDVVAVVFEDH 289 (719)
Q Consensus 275 ~~~~~~v~gvi~N~~ 289 (719)
+..+.++.|+|+|++
T Consensus 262 ~~~~~~~~GvVlN~~ 276 (299)
T 3cio_A 262 EQAGVNIKGAILNGV 276 (299)
T ss_dssp HHTTCCCCCEEEEEC
T ss_pred HhCCCCeEEEEEeCC
Confidence 999999999999998
No 221
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=98.46 E-value=1.5e-07 Score=104.72 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=57.9
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCcceeeeh--hccCCCc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYG--KLLTGGV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIvtlg--K~LggG~ 695 (719)
++.+|++.+- ...|.+.+ +++|.++|++||++||+||++++..+.+. .+....+ .+|+++.+ |.++|+
T Consensus 146 ~~~~v~~~~~--n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~--g~Di~~~S~~K~l~~~- 216 (446)
T 2x3l_A 146 GHKLVVLTYP--NYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNY--QADYVVQSFHKTLPAL- 216 (446)
T ss_dssp -CCEEEEESS--CTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGG--TCSEEEECHHHHSSSC-
T ss_pred CceEEEEECC--CCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHc--CCCEEEECCccccccc-
Confidence 3456666662 33677776 89999999999999999999986222222 2222233 37998766 998877
Q ss_pred cchheeEeCHHHHh
Q 005009 696 IPLAATLATNAVFD 709 (719)
Q Consensus 696 ~Plsavl~~~~i~~ 709 (719)
.++|++++++++++
T Consensus 217 ~g~g~l~~~~~~i~ 230 (446)
T 2x3l_A 217 TMGSVLYIHKNAPY 230 (446)
T ss_dssp TTCEEEEEETTCTT
T ss_pred cccEEEEEcCCcCC
Confidence 57899999887644
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.39 E-value=8.1e-06 Score=90.74 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
....++|+|. +|+||||++..|+.+|. ++|++|..+.
T Consensus 99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~-----~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGI-QGSGKTTTVAKLARYFQ-----KRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CCeEEEEECc-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 3457899999 99999999999999995 7799998876
No 223
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=98.38 E-value=1.6e-06 Score=97.74 Aligned_cols=214 Identities=14% Similarity=0.074 Sum_probs=121.9
Q ss_pred CHHHHHHHHHhhhhccc--c-c--CCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 418 QIELARDMGYTAARFGH--V-M--FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~--~-~--~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
.+++++++.+++..... . . ......+...++++.+.+..+.. ..+.++++++|++|+..+++... ...
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~~-- 181 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI----RNE-- 181 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC----CST--
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc----CCC--
Confidence 77888888888876421 1 1 11122344556666665433211 13689999999999999998761 011
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhc
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (719)
...|+...-+|++.... +...|... ..++..+.
T Consensus 182 --------------gd~Vlv~~p~y~~~~~~-~~~~g~~~----------------------------~~~~~~~~---- 214 (500)
T 3tcm_A 182 --------------KDGILVPIPQYPLYSAS-IALHGGAL----------------------------VPYYLNES---- 214 (500)
T ss_dssp --------------TEEEEEEESCCTHHHHH-HHHTTCEE----------------------------EEEECBTT----
T ss_pred --------------CCEEEEeCCCcHhHHHH-HHHcCCEE----------------------------EEEecccc----
Confidence 24688888888764432 22222110 01111100
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHH
Q 005009 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (719)
Q Consensus 572 ~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~ 651 (719)
++ + .-| .+.|++.+.+.. ..+.++.+|++.-. +.-.|.+. +.+-+++|.++|+
T Consensus 215 ---------~~----~--~~d--------~~~l~~~l~~~~--~~~~~~k~ivl~~p-~NPtG~~~-s~~~l~~i~~la~ 267 (500)
T 3tcm_A 215 ---------TG----W--GLE--------TSDVKKQLEDAR--SRGINVRALVVINP-GNPTGQVL-AEENQYDIVKFCK 267 (500)
T ss_dssp ---------TT----S--BCC--------HHHHHHHHHHHH--HTTCEEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHH
T ss_pred ---------cC----C--CCC--------HHHHHHHHHHHH--hcCCCceEEEEECC-CCCCcccC-CHHHHHHHHHHHH
Confidence 00 0 001 244555554310 11235655555543 56566654 6778999999999
Q ss_pred hcCCcEEEeccccCccccC--ccccc----cccCC-Ccc---ee--eehhcc-C-CCccchheeEe---CHHHHhhhc
Q 005009 652 NRKIPVIFDEVFTGFWRLG--VETTA----DLLGC-VPD---IA--CYGKLL-T-GGVIPLAATLA---TNAVFDSFV 712 (719)
Q Consensus 652 k~gilLI~DEVqTGfGRtG--~~~a~----e~~gv-~PD---Iv--tlgK~L-g-gG~~Plsavl~---~~~i~~~~~ 712 (719)
+||+++|+||++.++...+ .+..+ ..++. ..| |+ +++|++ | .| +.+|++++ ++++++.+.
T Consensus 268 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~ 344 (500)
T 3tcm_A 268 NEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIY 344 (500)
T ss_dssp HHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHH
T ss_pred HcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHH
Confidence 9999999999998753322 22221 12332 222 33 789999 4 37 68888888 888877653
No 224
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=98.37 E-value=7.5e-07 Score=101.83 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=129.6
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc-cCCC----CCCeEEEeCChHHHHH
Q 005009 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG-VGKG----WASRAYFSDNGSTAIE 475 (719)
Q Consensus 401 yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~-~~~~----~~~rv~f~~SGsEA~E 475 (719)
++|+..| ..+|. +|.+++++.+++....+.. .....+...++++.+.+. .+.+ ..+.++++++++||+.
T Consensus 106 ~i~l~~g----~~~~~-~~~~~~al~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~ 179 (546)
T 2zy4_A 106 SLSYVRD----QLGLD-PAAFLHEMVDGILGCNYPV-PPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA 179 (546)
T ss_dssp HHHHHHH----TSCCC-HHHHHHHHHHHHHTCSCCS-SSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHH
T ss_pred hhecccC----CCCCC-ChHHHHHHHHhhhcCCCCC-CcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHH
Confidence 5565443 45788 8999999988875422221 122345555666665432 1110 1368999999999999
Q ss_pred HHHHHHH-HHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 476 IALKMAF-RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 476 ~AlKlA~-r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
.+++... +.+. .. ..+|+...-+|++....+. +.+. +
T Consensus 180 ~~~~~l~~~~l~-~~----------------Gd~Vlv~~P~y~~~~~~~~-~~~~----g-------------------- 217 (546)
T 2zy4_A 180 YIFESLKLNGLL-KA----------------GDKVAIGMPVFTPYIEIPE-LAQY----A-------------------- 217 (546)
T ss_dssp HHHHHHHHTTSS-CT----------------TCEEEEEESCCHHHHHHHH-STTS----C--------------------
T ss_pred HHHHHhhhhhcC-CC----------------CCEEEEeCCCCccHHHHHH-HcCC----C--------------------
Confidence 9998741 1121 11 2478899999998654321 1110 0
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
...+++|. +.+.-| .-| .+.+++.+. .++.+|++..- +.-.|
T Consensus 218 ----~~~~~v~~---------------~~~~~~--~~d--------~~~l~~~~~--------~~~k~v~l~~p-~NPtG 259 (546)
T 2zy4_A 218 ----LEEVAINA---------------DPSLNW--QYP--------DSELDKLKD--------PAIKIFFCVNP-SNPPS 259 (546)
T ss_dssp ----CEEEEEEC---------------BGGGTT--BCC--------HHHHGGGGS--------TTEEEEEEESS-CSSSC
T ss_pred ----cEEEEEec---------------CcccCC--CCC--------HHHHHHhhC--------CCCeEEEEECC-CCCCC
Confidence 00111110 000000 001 233443332 35666666543 67777
Q ss_pred cccCCHHHHHHHHHHH--HhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC-CCccchheeEeCHH-HHhh
Q 005009 635 MHMVDPLFQRILVKEC--QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA-VFDS 710 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc--~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~-i~~~ 710 (719)
.+. +.+.+++|.++| ++||+++|.||++..|...+..+.....+....+.+++|.+| .| +.+|.++++++ +++.
T Consensus 260 ~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~~ 337 (546)
T 2zy4_A 260 VKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG-WRLGVVAAHQQNVFDL 337 (546)
T ss_dssp BCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG-GCEEEEEEESSCHHHH
T ss_pred ccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC-cceEEEEECCHHHHHH
Confidence 655 678899999999 889999999999998864322221111111122448999997 68 68999999875 6665
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 338 l 338 (546)
T 2zy4_A 338 A 338 (546)
T ss_dssp H
T ss_pred H
Confidence 5
No 225
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=98.33 E-value=1.2e-06 Score=99.58 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=36.0
Q ss_pred CCeEEEE-cCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 37 HPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 37 ~~~~~I~-gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
++.|||+ ||.+++||++++++|||.|. ++|++|.+||+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~-----~~g~~v~~~k~ 41 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILE-----ARGLNVTIMKL 41 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEE
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeeeec
Confidence 4689999 99999999999999999995 99999999997
No 226
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=98.32 E-value=1e-05 Score=83.15 Aligned_cols=91 Identities=5% Similarity=-0.112 Sum_probs=57.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCc-EEEEEEccC-CCCCHHHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYD-VVAVVFEDH-GLVNEVPL 297 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~-v~gvi~N~~-~~~~~~~l 297 (719)
.+|+|||.+..++ +..........+ -||+|+.....++..+...++.++..+.+ -+++|+|++ .......+
T Consensus 144 ~yD~viiD~pp~~------~~~~~~~l~~aD-~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~~~~~~ 216 (267)
T 3k9g_A 144 KYDYIVIDTNPSL------DVTLKNALLCSD-YVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTL 216 (267)
T ss_dssp TCSEEEEEECSSC------SHHHHHHHTTCS-EEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTCSCCHH
T ss_pred CCCEEEEECcCCc------cHHHHHHHHHCC-eEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcchHHHH
Confidence 4999999996643 112222323222 37777788888888888888888866433 236999998 22334455
Q ss_pred HHhhcCCCcEEe-cCCCCCCC
Q 005009 298 MSYLRNRVPVLV-LPPLPQDS 317 (719)
Q Consensus 298 ~~~~~~~~pvlg-lP~~~~~~ 317 (719)
.+.++++.|+++ ||+.+.+.
T Consensus 217 ~~~l~~~~~~~~~Ip~~~~~~ 237 (267)
T 3k9g_A 217 FEILKTKDRFLGTISEREDLN 237 (267)
T ss_dssp HHHHTTSTTEEEEEEC-----
T ss_pred HHHHhcCcccceecCcHHHHH
Confidence 666655789999 99988755
No 227
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=98.31 E-value=1.4e-06 Score=94.04 Aligned_cols=64 Identities=17% Similarity=0.020 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---C----------H---HHHHHhhcCCCcEEe-cCCC
Q 005009 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---N----------E---VPLMSYLRNRVPVLV-LPPL 313 (719)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~---~----------~---~~l~~~~~~~~pvlg-lP~~ 313 (719)
..+|+|+.....++..+..+++.+++.|+++.|||+|++... . . +.+.+.+ +.+.++ ||..
T Consensus 238 ~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~l~~iPl~ 315 (349)
T 3ug7_A 238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKF--GDKVIAYVPLL 315 (349)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHS--TTSEEEEEECC
T ss_pred ceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHc--CCCcEEEecCC
Confidence 348999999999999999999999999999999999998322 1 1 1222222 788888 9998
Q ss_pred CCC
Q 005009 314 PQD 316 (719)
Q Consensus 314 ~~~ 316 (719)
+..
T Consensus 316 ~~e 318 (349)
T 3ug7_A 316 RTE 318 (349)
T ss_dssp SSC
T ss_pred CCC
Confidence 863
No 228
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.28 E-value=2.5e-06 Score=89.76 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=59.8
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCC-CCH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGL-VNE 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~-~~~ 294 (719)
.+|+|||.+.+++..+. ...++...+ -||+|+.....++..+...++.++. .++++.|+|+|++.. ...
T Consensus 156 ~yD~ViiD~p~~~~~~~-----~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~~~~ 229 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-----FAAPLQHAD-QAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATDEV 229 (307)
T ss_dssp SCSEEEEEECCSSCCGG-----GGGGGGTCS-EEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCHHH
T ss_pred cCCEEEEeCCCccchHH-----HHHHHHHCC-EEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcHHHH
Confidence 59999999966544321 111122222 3788888888788888888888875 467889999999843 233
Q ss_pred HHHHHhhcCCCcEEe-cCCCCC
Q 005009 295 VPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 295 ~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.+.+.+ ++|+++ ||+.+.
T Consensus 230 ~~~~~~~--g~~v~~~Ip~~~~ 249 (307)
T 3end_A 230 DRFCKET--NFRRLAHMPDLDA 249 (307)
T ss_dssp HHHHHHH--TCCEEEEECCCHH
T ss_pred HHHHHHc--CCCceeeCCccHH
Confidence 4444445 899999 888543
No 229
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.26 E-value=7.7e-06 Score=87.26 Aligned_cols=40 Identities=13% Similarity=-0.086 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 005009 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (719)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (719)
.-+|+|+....-++..+..+++.++..|+++.|||+|++.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~ 262 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVL 262 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCc
Confidence 3589999999999999999999999999999999999983
No 230
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=98.23 E-value=3e-06 Score=96.30 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=36.7
Q ss_pred CCCeEEEE-cCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 36 SHPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 36 ~~~~~~I~-gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
|++.|||+ ||.+++||++++++||+.|. ++|++|.+||+
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~-----~~g~~v~~~k~ 50 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLR-----ARGYRVTAIKI 50 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEE
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeEeec
Confidence 46789999 99999999999999999995 99999999997
No 231
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=98.21 E-value=2.4e-05 Score=83.69 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=48.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CCC-------------HHH---HHHhhcCCCcEEecCCCCC
Q 005009 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVN-------------EVP---LMSYLRNRVPVLVLPPLPQ 315 (719)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~~-------------~~~---l~~~~~~~~pvlglP~~~~ 315 (719)
+++|+.....++.++..+++.++..|+++.|+|+|++. ... ... +.+.+. ++|+..||+.+.
T Consensus 224 ~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~-~~~~~~vP~~~~ 302 (329)
T 2woo_A 224 FVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYE-DFHVVKVPQVPA 302 (329)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEECCSS
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcC-CCCEEEecCCCC
Confidence 89999999999999999999999999999999999984 221 111 222221 678866998764
No 232
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=98.16 E-value=2.2e-05 Score=88.84 Aligned_cols=97 Identities=10% Similarity=0.040 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|.+.. ..+....+|++.-. ....|.+.+ +++|.++|++||+++++|+++.|.--...-+.....|+
T Consensus 233 ~~Le~~i~~~~--~~g~~~~~vv~~~~-~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~ 305 (511)
T 3vp6_A 233 ADFEAKILEAK--QKGYVPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 305 (511)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEEEBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG
T ss_pred HHHHHHHHHHH--hcCCCcEEEEEecC-CCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCc
Confidence 45666665310 12234677887765 777888877 99999999999999999999976422222222222244
Q ss_pred Ccceee--ehhccCCCccchheeEeCHH
Q 005009 681 VPDIAC--YGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 681 ~PDIvt--lgK~LggG~~Plsavl~~~~ 706 (719)
..|+++ ..|.+++. +-.|+++++++
T Consensus 306 ~aDsv~~~~hK~l~~p-~g~g~l~~~~~ 332 (511)
T 3vp6_A 306 RANSVTWNPHKMMGVL-LQCSAILVKEK 332 (511)
T ss_dssp GCSEEEECTTSTTCCC-SCCEEEEESST
T ss_pred cCCEEEECcccccCCC-cCeEEEEEeCH
Confidence 468775 57888765 45677777654
No 233
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=98.14 E-value=2.5e-05 Score=79.98 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=55.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh------CCCcEEEEEEccCCCC-
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL------RGYDVVAVVFEDHGLV- 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~------~~~~v~gvi~N~~~~~- 292 (719)
.+|+|||.+.+++.. .........+ .||+|+.....++..+...++.++. .++++.|+|+|++...
T Consensus 111 ~yD~iiiD~pp~~~~------~~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP------LTLNALAAAE-GVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TCSEEEEECCSSCCH------HHHHHHHHCS-EEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred CCCEEEEeCCCCCCH------HHHHHHHHCC-eEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 499999999776421 2233333333 4788888887777776666655542 3678899999998432
Q ss_pred C-----HHHHHHhhcCCCcEE-e-cCCCC
Q 005009 293 N-----EVPLMSYLRNRVPVL-V-LPPLP 314 (719)
Q Consensus 293 ~-----~~~l~~~~~~~~pvl-g-lP~~~ 314 (719)
. .+.+++.+ +.|++ + ||+.+
T Consensus 184 ~~~~~~~~~l~~~~--~~~~~~~~Ip~~~ 210 (257)
T 1wcv_1 184 LLAQQVEAQLRAHF--GEKVFWTVIPRNV 210 (257)
T ss_dssp SHHHHHHHHHHHHH--GGGBCSCCCBCCH
T ss_pred HHHHHHHHHHHHHc--cccccCccCCCcH
Confidence 1 23445555 77776 5 77654
No 234
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=98.14 E-value=2.4e-05 Score=84.81 Aligned_cols=189 Identities=12% Similarity=0.041 Sum_probs=112.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHH-HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELL-LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L-~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
.|++.+|+.+.++...+. ...+...+|.++| +++.+. .+.+++++||++|+..|++.+. -..|
T Consensus 15 ~~~i~~a~~~~~~~~~~~----~~~~~~~~l~~~~~a~~~g~--~~~~v~~~sgt~al~~al~~l~----~~~G------ 78 (377)
T 3ju7_A 15 VIEYLDELKEIDASHIYT----NYGPINQRFEQTIMSGFFQN--RGAVTTVANATLGLMAAIQLKK----RKKG------ 78 (377)
T ss_dssp GGGGHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHTSTT--CSEEEEESCHHHHHHHHHHHHS----CTTC------
T ss_pred cHHHHHHHHHHHHcCCcc----cCCHHHHHHHHHHHHHHhCC--CCeEEEeCCHHHHHHHHHHHcC----CCCc------
Confidence 478889998888764321 1246678999999 998872 2578999999999999988750 1111
Q ss_pred CCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~ 575 (719)
..||.-...|.+ +..++...|... ..++.. +.+
T Consensus 79 ----------d~Vi~~~~~~~~-~~~~~~~~G~~~----------------------------~~v~~~~~~~------- 112 (377)
T 3ju7_A 79 ----------KYALMPSFTFPA-TPLAAIWCGLEP----------------------------YFIDISIDDW------- 112 (377)
T ss_dssp ----------CEEEEESSSCTH-HHHHHHHTTCEE----------------------------EEECBCTTTC-------
T ss_pred ----------CEEEECCCCcHH-HHHHHHHcCCEE----------------------------EEEecCCccC-------
Confidence 367777777665 333332222100 011110 001
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi 655 (719)
+ -| .+.+++.+.. ...++.+|+ |+ ...|...+ +++|.++|+ ||+
T Consensus 113 -----~---------~d--------~~~l~~~i~~-----~~~~tk~v~--~~--~~~G~~~~----~~~i~~la~-~~~ 156 (377)
T 3ju7_A 113 -----Y---------MD--------KTVLWDKIEE-----LKEEVAIVV--PY--ATFGSWMN----LEEYEELEK-KGV 156 (377)
T ss_dssp -----S---------BC--------HHHHHHHHHH-----HGGGEEEEC--CB--CGGGBCCC----CHHHHHHHH-TTC
T ss_pred -----C---------cC--------HHHHHHHHhc-----CCCCceEEE--EE--CCCCCccC----HHHHHHHHh-cCC
Confidence 0 01 2456666631 011256666 43 23465555 799999999 999
Q ss_pred cEEEeccccCccccCcccccccc-CCCcceeeeh----hccCCCccchheeEeC-HHHHhh
Q 005009 656 PVIFDEVFTGFWRLGVETTADLL-GCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDS 710 (719)
Q Consensus 656 lLI~DEVqTGfGRtG~~~a~e~~-gv~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~ 710 (719)
++|.|++|+ +|- .+..... +.-.|+.+++ |.+|+| -.|+++++ +++.+.
T Consensus 157 ~vi~D~a~a-~g~---~~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~ 211 (377)
T 3ju7_A 157 PVVVDAAPG-FGL---MNGGMHYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQR 211 (377)
T ss_dssp CBEEECTTC-TTC---EETTEETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHH
T ss_pred EEEEECCCc-cCC---eECCEeccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHH
Confidence 999999996 442 2222233 2336787775 999875 24555554 555543
No 235
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.13 E-value=3.6e-06 Score=96.91 Aligned_cols=95 Identities=11% Similarity=0.001 Sum_probs=63.9
Q ss_pred cCcEEEEeCCCCCCCC----------------CCCCchhHHHHhhc----CCCEEEEEcCCCChHHHHHHHHHHHHhCCC
Q 005009 220 MEILCIVETAGGVASP----------------GPSGSLQCDLYRPF----RLPGILVGDGRLGGISGTISAYESLKLRGY 279 (719)
Q Consensus 220 ~~d~vivEGagG~~~p----------------~~~~~~~~dla~~l----~~pvilV~~~~~g~i~~~~~~~~~l~~~~~ 279 (719)
.+|+|||++++++... ..+.....++...+ ...+|+|+.....+++++..+++.++..|+
T Consensus 440 ~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~ 519 (589)
T 1ihu_A 440 GKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGI 519 (589)
T ss_dssp GTSEEEESCCCCHHHHHHHHHC------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCC
Confidence 4999999999874311 00000122333322 357999999999999999999999999999
Q ss_pred cEEEEEEccCCCC---C--------------HHHHHHhhcCCCcEEecCCCCCC
Q 005009 280 DVVAVVFEDHGLV---N--------------EVPLMSYLRNRVPVLVLPPLPQD 316 (719)
Q Consensus 280 ~v~gvi~N~~~~~---~--------------~~~l~~~~~~~~pvlglP~~~~~ 316 (719)
++.|||+|++... . .+.|++.+ +.||.-+|+.++.
T Consensus 520 ~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~iP~~~~e 571 (589)
T 1ihu_A 520 HPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQH--ASRVALVPVLASE 571 (589)
T ss_dssp CCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTT--CSSEEEEECCSSC
T ss_pred CCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc--CCcEEEccCCCCC
Confidence 9999999998321 1 12222333 6788449998763
No 236
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=98.10 E-value=1.7e-05 Score=87.73 Aligned_cols=201 Identities=8% Similarity=-0.112 Sum_probs=112.7
Q ss_pred CHHHHHHHHHhhhhcccccCCCC--CChHHHHHHHHHHhccCCCCCC----eEEEeCChHHHHHHHHHHHHHHhhc---c
Q 005009 418 QIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKGWAS----RAYFSDNGSTAIEIALKMAFRKFSF---D 488 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~--~~~~~~~Lae~L~~~~~~~~~~----rv~f~~SGsEA~E~AlKlA~r~~~~---~ 488 (719)
||.+.+++.+.++...... ..+ ..+...++.+.|+++.+.+.-. .++|+++|+||+..|+..++..+.. .
T Consensus 55 ~~~v~e~~~~a~~~~~~~~-~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 55 DENVHKLMDLSINKNWIDK-EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CHHHHHHHHHTTTCBTTCT-TTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCh-hhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999988876532211 011 1223456666677777643111 4899999999999999988322211 0
Q ss_pred ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc-h
Q 005009 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-W 567 (719)
Q Consensus 489 ~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~ 567 (719)
.|. ...+..||..+ .|-....++...|.. ...++... .
T Consensus 134 ~G~-----------~~~~~~vi~~~--~h~~~~~~~~~~G~~----------------------------v~~v~~~~~~ 172 (452)
T 2dgk_A 134 AGK-----------PTDKPNLVCGP--VQICWHKFARYWDVE----------------------------LREIPMRPGQ 172 (452)
T ss_dssp TTC-----------CCSCCEEEESS--CCHHHHHHHHHTTCE----------------------------EEECCCBTTB
T ss_pred cCC-----------CCCCcEEEECC--CcHHHHHHHHHcCce----------------------------EEEEecCCCC
Confidence 110 00123566554 776544433332211 01111110 0
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCccccCCHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHMVDPLFQRIL 646 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI-vEPViqg~gG~~~pp~~fl~~L 646 (719)
+ .-| .+.|++.|.+ +..+|+ .-|. ...|.+.+ +++|
T Consensus 173 ~---------------------~~d--------~~~l~~~i~~--------~t~~v~~~~~~--n~tG~~~~----l~~I 209 (452)
T 2dgk_A 173 L---------------------FMD--------PKRMIEACDE--------NTIGVVPTFGV--TYTGNYEF----PQPL 209 (452)
T ss_dssp C---------------------SCC--------HHHHHHHCCT--------TEEEEECBBSC--TTTCBBCC----HHHH
T ss_pred C---------------------eEC--------HHHHHHHHhh--------CCEEEEEEcCC--cCCcccCC----HHHH
Confidence 1 001 3567777642 344444 4453 45677777 9999
Q ss_pred HHHHHhc------CCcEEEeccccCccc---cCc-cccccccCCCcceeeeh--hccCCCccchheeEeCHH
Q 005009 647 VKECQNR------KIPVIFDEVFTGFWR---LGV-ETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA 706 (719)
Q Consensus 647 r~Lc~k~------gilLI~DEVqTGfGR---tG~-~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~ 706 (719)
.++|++| |+++++||++.|+.. .++ .+.++. -..|+++++ |.+.+| .-+|+++++++
T Consensus 210 ~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~~~~-~~~G~~~~~~~ 278 (452)
T 2dgk_A 210 HDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFGLAP-LGCGWVIWRDE 278 (452)
T ss_dssp HHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCC-SSCEEEEESSG
T ss_pred HHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECcccccCCC-CCeEEEEEcCH
Confidence 9999996 999999999987532 111 111111 146877664 866555 46788888753
No 237
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=98.08 E-value=3.2e-05 Score=87.16 Aligned_cols=216 Identities=11% Similarity=0.004 Sum_probs=120.8
Q ss_pred CHHHHHHHHHhhhhccc-----ccCCCCCChHHHHHHHHHHhccC-CC-CCCeEEEeCChHHHHHHHHHHHHHHhhcccc
Q 005009 418 QIELARDMGYTAARFGH-----VMFPENVYEPALECAELLLQGVG-KG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~-----~~~~~~~~~~~~~Lae~L~~~~~-~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
..++.+++++.+..... ........+...++++.+.+..+ -. .-+.+++++++++|+..++++.. ..|
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-----~~g 177 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-----SGG 177 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-----CCC
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-----CCC
Confidence 56666877777765321 11112223556677777765532 10 13689999999999999998761 111
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhh
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (719)
. ..+..|+.-.-.|.+.+ .++...|.. .+++|
T Consensus 178 d------------~~~d~Vlv~~p~y~~~~-~~~~~~g~~------------------------------~v~~~----- 209 (498)
T 3ihj_A 178 G------------KSRTGVMIPIPQYPLYS-AVISELDAI------------------------------QVNYY----- 209 (498)
T ss_dssp G------------GGSEEEEEEESCCTHHH-HHHHHTTCE------------------------------EEEEE-----
T ss_pred C------------CCCCEEEEeCCCchhHH-HHHHHcCCE------------------------------EEEee-----
Confidence 0 01246777777776543 223322211 11111
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
.+ .+.-| .-| .+.|++.+.+. ....++.+|++.-. +.-.|.+. +.+-+++|.++|
T Consensus 210 ---------~~-~~~~~--~~d--------~~~le~~l~~~---~~~~~~k~i~l~np-~NPTG~v~-s~~~l~~i~~la 264 (498)
T 3ihj_A 210 ---------LD-EENCW--ALN--------VNELRRAVQEA---KDHCDPKVLCIINP-GNPTGQVQ-SRKCIEDVIHFA 264 (498)
T ss_dssp ---------CB-GGGTT--BCC--------HHHHHHHHHHH---TTTSEEEEEEEESS-CTTTCCCC-CHHHHHHHHHHH
T ss_pred ---------cc-ccccC--CCC--------HHHHHHHHHhh---hccCCCeEEEEECC-CCCCCCcC-CHHHHHHHHHHH
Confidence 00 00000 001 35677777641 11124666665543 56667654 677899999999
Q ss_pred HhcCCcEEEeccccCccccC--cccccccc--CCCc----c--e---eeehhcc-C-CCccchheeE---eCHHHHhhhc
Q 005009 651 QNRKIPVIFDEVFTGFWRLG--VETTADLL--GCVP----D--I---ACYGKLL-T-GGVIPLAATL---ATNAVFDSFV 712 (719)
Q Consensus 651 ~k~gilLI~DEVqTGfGRtG--~~~a~e~~--gv~P----D--I---vtlgK~L-g-gG~~Plsavl---~~~~i~~~~~ 712 (719)
++||+++|+||++..+...+ .+..+... ++.+ | + -+++|.+ | .| +.+|.++ .++++.+.+.
T Consensus 265 ~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~ 343 (498)
T 3ihj_A 265 WEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG-YRGGYMEVINLHPEIKGQLV 343 (498)
T ss_dssp HHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS-SCCEEEEEESCCHHHHHHHH
T ss_pred HHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc-cceEEEEEecCCHHHHHHHH
Confidence 99999999999997653322 22222111 1111 1 2 2789999 4 57 6888887 5888877653
No 238
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=98.05 E-value=3.5e-05 Score=86.35 Aligned_cols=97 Identities=10% Similarity=-0.006 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|++.. ..+....+|++.-. ....|.+.+ +++|.++|++||++|++|+++.|+.-.+..+.....|+
T Consensus 226 ~~Le~~i~~~~--~~g~~~~~vv~~~~-~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~ 298 (481)
T 4e1o_A 226 EALQKAIEEDK--QRGLVPVFVCATLG-TTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE 298 (481)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGG
T ss_pred HHHHHHHHHHH--hCCCCcEEEEEecC-CCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcc
Confidence 45666665310 11222344444433 455677777 99999999999999999999976433333333323354
Q ss_pred Ccceeee--hhccCCCccchheeEeCHH
Q 005009 681 VPDIACY--GKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 681 ~PDIvtl--gK~LggG~~Plsavl~~~~ 706 (719)
..|.+++ .|.+++- ...|++++++.
T Consensus 299 ~aDsi~~~~hK~l~~p-~g~g~l~~~~~ 325 (481)
T 4e1o_A 299 YADSFTFNPSKWMMVH-FDCTGFWVKDK 325 (481)
T ss_dssp GCSEEEECHHHHSSCC-SSCEEEEESBH
T ss_pred cCCEEEEChHHhcCCC-CceEEEEEeCH
Confidence 4688765 7888864 35667777764
No 239
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=98.02 E-value=2.1e-05 Score=80.72 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=58.6
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCC-CH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLV-NE 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~-~~ 294 (719)
.||+|||.+.+++.. ......++...---||+|+.....++..+...++.++. .++++.|+|+|++... ..
T Consensus 115 ~yD~iiiD~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 190 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVC----GGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY 190 (269)
T ss_dssp TCSEEEEEEECSSCS----TTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH
T ss_pred CCCEEEEeCCchhhh----hhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhH
Confidence 499999999765422 11222233333345888888887788877666666653 2678899999998322 22
Q ss_pred ---HHHHHhhcCCCcEEe-cCCCCC
Q 005009 295 ---VPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 295 ---~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.+.+.+ +.|+++ ||+.+.
T Consensus 191 ~~~~~l~~~~--~~~v~~~Ip~~~~ 213 (269)
T 1cp2_A 191 ELLDAFAKEL--GSQLIHFVPRSPM 213 (269)
T ss_dssp HHHHHHHHHH--TCCEEEEECCCHH
T ss_pred HHHHHHHHHc--CCcccccCCCCcH
Confidence 3344444 899999 888753
No 240
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=98.00 E-value=1.4e-05 Score=80.46 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=62.1
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CCCHHHHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVNEVPLM 298 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~~~~~l~ 298 (719)
.+|+|||.+..++.. ....+....+ -+|+|+.....++..+....+.++..++...++|+|++. ....+.++
T Consensus 131 ~yD~viiD~pp~~~~------~~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~ 203 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH------LTRGTAKAVD-MMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIKEEKLIK 203 (254)
T ss_dssp CCSEEEEEECTTCTT------CCHHHHTTCS-EEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCHHHHHHHH
T ss_pred CCCEEEEeCCCcccH------HHHHHHHHCC-EEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCChhHHHHHH
Confidence 499999999775532 1222222222 378888888888888888888888888888999999984 33345566
Q ss_pred HhhcCCCcEEe-cCCCCC
Q 005009 299 SYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 299 ~~~~~~~pvlg-lP~~~~ 315 (719)
+.+. +.++.+ ||+.+.
T Consensus 204 ~~~~-~~~~~~~Ip~~~~ 220 (254)
T 3kjh_A 204 KHLP-EDKILGIIPYNEL 220 (254)
T ss_dssp HHSC-GGGEEEEEECCHH
T ss_pred HHhc-CCcccccccCcHH
Confidence 6662 488988 998653
No 241
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=98.00 E-value=5.9e-05 Score=75.10 Aligned_cols=89 Identities=7% Similarity=-0.027 Sum_probs=60.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh-CCCcEEEEEEccCCCCC---HH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL-RGYDVVAVVFEDHGLVN---EV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~-~~~~v~gvi~N~~~~~~---~~ 295 (719)
.+|++||.+.+++.++ ....+....+ -+|+|+.....++..+...++.++. .+.+ .++|+|++.... ..
T Consensus 67 ~yD~viiD~p~~~~~~-----~~~~~l~~aD-~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-----DLEALADGCD-LLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSKDGD 139 (209)
T ss_dssp GCSEEEEEEECCCSSS-----HHHHHHHTSS-EEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSCHHH
T ss_pred cCCEEEEeCCCCcCcH-----HHHHHHHHCC-EEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccchHHH
Confidence 3999999998763332 2333333333 3778888888899999999999887 4666 789999994332 33
Q ss_pred HHHHhhcC-CCcEE-e-cCCCCC
Q 005009 296 PLMSYLRN-RVPVL-V-LPPLPQ 315 (719)
Q Consensus 296 ~l~~~~~~-~~pvl-g-lP~~~~ 315 (719)
.+.+.+++ ++|++ + ||+.+.
T Consensus 140 ~~~~~l~~~g~~v~~~~Ip~~~~ 162 (209)
T 3cwq_A 140 EARQLLTTAGLPLFKRGIKRYSA 162 (209)
T ss_dssp HHHHHHHHTTCCBCSSCCBCCTH
T ss_pred HHHHHHHHcCCchhhccCCCcHH
Confidence 44444433 78888 5 776543
No 242
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.00 E-value=0.0001 Score=81.90 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC-CCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~-g~~v~~~K 78 (719)
..+.++|+|. +|+|||++++.|+.+|. ++ |++|..+.
T Consensus 99 ~~~vI~ivG~-~GvGKTT~a~~LA~~l~-----~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGL-QGAGKTTSVGKLGKFLR-----EKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECS-TTSSHHHHHHHHHHHHH-----HTSCCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HhcCCeEEEEe
Confidence 3457888886 89999999999999995 66 99998776
No 243
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.97 E-value=1.6e-05 Score=82.91 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++.|.|+++..|||||++++.|+.+|. ++|+||..+.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La-----~~G~~VlliD 40 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALL-----YGGAKVAVID 40 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 3468999999999999999999999995 7799998876
No 244
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=97.97 E-value=1e-05 Score=91.35 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCcEEEecccc-CccccCccccccccCCCccee--eehhccCCCccchheeEeCHH
Q 005009 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 643 l~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~ 706 (719)
+++++++|++||++||+|++|. |+--.|..- ..+. ..|++ ++.|+|+|. ..|+++++++
T Consensus 220 l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~--~~~~-~aDiv~~S~hK~l~Gp--~GG~i~~~~~ 281 (490)
T 2a7v_A 220 YARMREVCDEVKAHLLADMAHISGLVAAKVIP--SPFK-HADIVTTTTHKTLRGA--RSGLIFYRKG 281 (490)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC--CGGG-TCSEEEEESSGGGCSC--SCEEEEEECS
T ss_pred HHHHHHHHHHcCCEEEEccccccccccCCcCC--CCCC-CCCEEEECCcccCccc--cchheeeccc
Confidence 8999999999999999999985 332223211 1111 25877 679999653 3456776653
No 245
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.97 E-value=2.2e-06 Score=98.65 Aligned_cols=72 Identities=17% Similarity=0.031 Sum_probs=52.4
Q ss_pred HHHhhcCCC----EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCH-----------HHHHHhhcC-----
Q 005009 244 DLYRPFRLP----GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNE-----------VPLMSYLRN----- 303 (719)
Q Consensus 244 dla~~l~~p----vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~-----------~~l~~~~~~----- 303 (719)
++.+.+.-| +|+|+.....++.++..+++.|+..|+++.|+|+|++..... ....+++.+
T Consensus 188 ~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (589)
T 1ihu_A 188 YAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADL 267 (589)
T ss_dssp HHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 444445554 899999999999999999999999999999999999833211 112223321
Q ss_pred -CCcEEecCCCCC
Q 005009 304 -RVPVLVLPPLPQ 315 (719)
Q Consensus 304 -~~pvlglP~~~~ 315 (719)
..|+..+|..+.
T Consensus 268 ~~~~i~~vPl~~~ 280 (589)
T 1ihu_A 268 AGLPTDTLFLQPV 280 (589)
T ss_dssp HTSCEEEEECCSS
T ss_pred cCCCEEEecCCCC
Confidence 677777887764
No 246
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.97 E-value=4.1e-05 Score=79.71 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=56.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCCCH-
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLVNE- 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~~~- 294 (719)
.+|+|||.+.+++.. +...+-++...---||+|+.....++..+...++.++. .+.++.|+|+|++.....
T Consensus 118 ~yD~ViID~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 193 (289)
T 2afh_E 118 DLDFVFYDVLGDVVC----GGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRED 193 (289)
T ss_dssp TCSEEEEEEECSSCC----TTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHH
T ss_pred CCCEEEEeCCCcccc----chhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHH
Confidence 499999999765421 11122222222223788888877777777666666553 377899999999843222
Q ss_pred ---HHHHHhhcCCCcEEe-cCCCCC
Q 005009 295 ---VPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 295 ---~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.+.+.+ +.|+++ ||+.+.
T Consensus 194 ~~~~~l~~~~--g~~~l~~Ip~~~~ 216 (289)
T 2afh_E 194 ELIIALANKL--GTQMIHFVPRDNV 216 (289)
T ss_dssp HHHHHHHHHH--TSCEEEEECCCHH
T ss_pred HHHHHHHHHc--CccccccCCCchh
Confidence 2333334 899999 887643
No 247
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=97.95 E-value=3.5e-05 Score=85.54 Aligned_cols=99 Identities=12% Similarity=-0.007 Sum_probs=62.4
Q ss_pred HHHHHHH-hcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccC
Q 005009 602 SYISQNL-LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLG 679 (719)
Q Consensus 602 ~~le~~l-~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~g 679 (719)
+.+++.| .. ....++.+|++.-. ....|.+.+ +++|.++|++||+++|+||++.++. .|.. ...+.+.
T Consensus 217 ~~l~~~i~~~----~~~~~~~~vv~~~~-nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~g~~~~~~~~~~ 286 (456)
T 2z67_A 217 EDIENAIKKE----IELGNRPCVLSTLT-FFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-NYYLEKLKKAFK 286 (456)
T ss_dssp HHHHHHHHHH----HHTTCCEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-HHHHHHHHHHHT
T ss_pred HHHHHHHHHH----hhCCCeEEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-HHhhHHHHHhhC
Confidence 4566666 31 00124555544332 355688877 9999999999999999999986552 2210 1111111
Q ss_pred CCcceeee--hhccCCCccchheeEe-CHHHHhhh
Q 005009 680 CVPDIACY--GKLLTGGVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 680 v~PDIvtl--gK~LggG~~Plsavl~-~~~i~~~~ 711 (719)
..+|++++ .|.++++ ..+|++++ ++++.+.+
T Consensus 287 ~~~D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l 320 (456)
T 2z67_A 287 YRVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEI 320 (456)
T ss_dssp SCCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHH
T ss_pred CCCCEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhc
Confidence 16898865 8977766 56788999 46776655
No 248
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=97.84 E-value=0.00011 Score=82.13 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=52.1
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Ccceeee--hhccCCCccch
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVIPL 698 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvtl--gK~LggG~~Pl 698 (719)
.++..+ ....|.+.+ +++|.++|++||+++++|+++.|.-..+..+.....|+ ..|.+++ .|.+++. ...
T Consensus 238 v~~~~~--~t~~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~ 310 (475)
T 3k40_A 238 AVVTLG--TTNSCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FDC 310 (475)
T ss_dssp EEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred EEEEec--CCCCcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-Cce
Confidence 444444 355677777 99999999999999999999975323332222222344 4688765 6888765 356
Q ss_pred heeEeCHH
Q 005009 699 AATLATNA 706 (719)
Q Consensus 699 savl~~~~ 706 (719)
|++++++.
T Consensus 311 g~l~~~~~ 318 (475)
T 3k40_A 311 SAMWLKDP 318 (475)
T ss_dssp EEEEESSG
T ss_pred EEEEEeCH
Confidence 67777754
No 249
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=97.84 E-value=5.2e-05 Score=85.02 Aligned_cols=85 Identities=13% Similarity=0.032 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCcc-ccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVE-TTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~-~a~e~~g 679 (719)
+.|++.+.+ .+..+|++ .. .+.+ .+.+ +++|+++|++||++||+||+|. |+--.|.. +.+.
T Consensus 183 d~le~~i~~-------~~tklIi~-~~-sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~--- 245 (483)
T 1rv3_A 183 DRLEENARL-------FHPKLIIA-GT-SCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--- 245 (483)
T ss_dssp HHHHHHHHH-------HCCSEEEE-CC-SSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---
T ss_pred HHHHHHHhh-------cCCcEEEE-eC-CcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC---
Confidence 567777752 13346777 43 3444 4444 8999999999999999999986 33222221 1111
Q ss_pred CCcceee--ehhccCCCccchheeEeCHH
Q 005009 680 CVPDIAC--YGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 680 v~PDIvt--lgK~LggG~~Plsavl~~~~ 706 (719)
..|+++ +.|.|+|. ..|.++++++
T Consensus 246 -~~div~~s~~K~l~Gp--rgG~i~~~~~ 271 (483)
T 1rv3_A 246 -HCHVVTTTTHKTLRGC--RAGMIFYRRG 271 (483)
T ss_dssp -TCSEEEEESSGGGCCC--SCEEEEEECS
T ss_pred -CCcEEEecCcccCCCC--CceEEEEcch
Confidence 368885 45999653 4577887764
No 250
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=97.79 E-value=0.00027 Score=79.60 Aligned_cols=202 Identities=12% Similarity=-0.079 Sum_probs=108.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCC--CChHHHHHHHHHHhccCCC----CCCeEEEeCChHHHHHHHHHHHHHHhhccc--
Q 005009 418 QIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKG----WASRAYFSDNGSTAIEIALKMAFRKFSFDH-- 489 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~--~~~~~~~Lae~L~~~~~~~----~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~-- 489 (719)
+|.+.+++.+.++...... ..+ ..+...++.+.|+++++.+ ..-...|+++|+||+..|+..+++.+..++
T Consensus 69 ~~~v~~~l~~~~~~~~~~~-~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 69 EPECDKLIMSSINKNYVDM-DEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CHHHHHHHHHTTTCBTTCT-TTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCCh-hcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 8999999998876633211 011 1223335666677776532 011345799999999999998843332211
Q ss_pred -cccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch-
Q 005009 490 -EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW- 567 (719)
Q Consensus 490 -G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~- 567 (719)
|. ...+..||.-.. .|.+...+....|.. ...++..+.
T Consensus 148 ~G~-----------~~~~~~vi~~~~-~h~s~~~~~~~~G~~----------------------------~~~v~~~~~~ 187 (502)
T 3hbx_A 148 EGK-----------PVDKPNIVTGAN-VQVCWEKFARYFEVE----------------------------LKEVKLSEGY 187 (502)
T ss_dssp TTC-----------CCSCCEEEEETT-CCHHHHHHHHHTTCE----------------------------EEEECCBTTB
T ss_pred cCC-----------CCCCcEEEEcCC-chHHHHHHHHHcCce----------------------------eEEEecCCCc
Confidence 21 012335555444 454433333332210 011111100
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
+ .-| .+.+++.+.+ +..+|++.-. ....|.+.+ +++|.
T Consensus 188 ~---------------------~~d--------~~~l~~~i~~--------~t~~v~~~~~-~n~tG~~~~----l~~I~ 225 (502)
T 3hbx_A 188 Y---------------------VMD--------PQQAVDMVDE--------NTICVAAILG-STLNGEFED----VKLLN 225 (502)
T ss_dssp C---------------------SCC--------HHHHHHHCCT--------TEEEEEEEBS-CTTTCCBCC----HHHHH
T ss_pred C---------------------cCC--------HHHHHHHHhh--------CCEEEEEecC-CCCCCcccC----HHHHH
Confidence 0 001 2556666642 3445554432 455688877 99999
Q ss_pred HHHHhc------CCcEEEeccccCccc---cCc-cccccccCCCcceee--ehhccCCCccchheeEeCH
Q 005009 648 KECQNR------KIPVIFDEVFTGFWR---LGV-ETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATN 705 (719)
Q Consensus 648 ~Lc~k~------gilLI~DEVqTGfGR---tG~-~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~ 705 (719)
++|+++ |++|++|+++.|+.. .+. .+.+.. -..|+++ ..|.++++ .-+|++++++
T Consensus 226 ~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~l~~p-~g~G~~~~~~ 292 (502)
T 3hbx_A 226 DLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKYGLVY-AGIGWVIWRN 292 (502)
T ss_dssp HHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCC-SSCEEEEESS
T ss_pred HHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccccCCC-CCeEEEEEeC
Confidence 999999 999999999986531 121 111111 1457663 45666444 3556666653
No 251
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=97.78 E-value=0.00022 Score=79.44 Aligned_cols=79 Identities=14% Similarity=-0.032 Sum_probs=52.7
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Ccceee--ehhccCCCccc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIAC--YGKLLTGGVIP 697 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvt--lgK~LggG~~P 697 (719)
+.++.-| ....|.+.+ +++|.++|++||+++++|+++.|+-.....+.....|+ ..|.++ ..|.++.. +.
T Consensus 238 ~vv~~~~--~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~ 310 (486)
T 1js3_A 238 FVVATLG--TTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FD 310 (486)
T ss_dssp EEEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SS
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cc
Confidence 4444445 355677777 99999999999999999999976432222121111233 358776 46988765 46
Q ss_pred hheeEeCHH
Q 005009 698 LAATLATNA 706 (719)
Q Consensus 698 lsavl~~~~ 706 (719)
+|+++++++
T Consensus 311 ~G~l~~~~~ 319 (486)
T 1js3_A 311 CSAMWVKRR 319 (486)
T ss_dssp CEEEEESCH
T ss_pred eEEEEEeCH
Confidence 788888754
No 252
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.78 E-value=0.00032 Score=77.68 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=34.0
Q ss_pred CCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 29 QPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 29 ~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++.+. ....+.|+|. +|+|||+++..|+..+. .+|.+|....
T Consensus 91 ~~i~l~-~~~vi~i~G~-~GsGKTT~~~~LA~~l~-----~~g~~Vllvd 133 (425)
T 2ffh_A 91 RLPVLK-DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (425)
T ss_dssp CCCCCC-SSEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ccccCC-CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEee
Confidence 344544 4456888887 89999999999999994 6689988776
No 253
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.74 E-value=3.8e-05 Score=80.14 Aligned_cols=66 Identities=11% Similarity=-0.095 Sum_probs=44.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh------CCCcEEEEEEccCCCC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL------RGYDVVAVVFEDHGLV 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~------~~~~v~gvi~N~~~~~ 292 (719)
.+|+|||.+.+++... ...-+. ..+ -||+|+.....++..+...++.++. .++++.|+|+|++...
T Consensus 154 ~yD~IiiD~pp~~~~~-----~~~~l~-~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY-----TNNAIV-ASD-YVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSHH-----HHHHHH-HCS-EEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccHH-----HHHHHH-HCC-eEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 4999999997654221 112222 222 3777888877788877777777654 4788999999998443
No 254
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=97.66 E-value=0.00017 Score=78.66 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCcEEecCCCCCC
Q 005009 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQD 316 (719)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlglP~~~~~ 316 (719)
.-++||.....-++..+..+++.+++.|+++.|+|+|+ .+..+.|.+.+. ++||..||..+..
T Consensus 215 t~~vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVvN~--~~~l~~i~~~F~-~~~v~~vpl~~~e 277 (374)
T 3igf_A 215 VAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVS--SQTEGDLSAEFT-PLSVTVVPDVTKG 277 (374)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEECC--CSCCCCCGGGST-TSCEEECCCCBTT
T ss_pred eEEEEEECCCccHHHHHHHHHHHHHHcCCCccEEEEcC--HHHHHHHHHhcC-CCceEECCCCChh
Confidence 45899999999999999999999999999999999999 233333444443 7999999988764
No 255
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=97.60 E-value=0.0012 Score=71.28 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=39.8
Q ss_pred HHhhcCCC----EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 005009 245 LYRPFRLP----GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (719)
Q Consensus 245 la~~l~~p----vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (719)
+.+.|.-| +|+|+.....++..+...++.|+..|+++.|+|+|++.
T Consensus 226 ~~~~L~d~~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 226 IRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHhcCCCCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 33445555 89999998889999999999999999999999999985
No 256
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.59 E-value=0.0014 Score=70.14 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=48.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CC---C--------------HHHHHHhhcCC-CcEEecCCC
Q 005009 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LV---N--------------EVPLMSYLRNR-VPVLVLPPL 313 (719)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~---~--------------~~~l~~~~~~~-~pvlglP~~ 313 (719)
+++|+....-.+..+..+++.|++.|+++.|||+|++. .. . .+.+.+.++ + .|+.-||+.
T Consensus 225 ~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~-~~~~~~~~pl~ 303 (334)
T 3iqw_A 225 FVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYD-EEFNVVKMPLL 303 (334)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEECC
T ss_pred EEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhcc-CCCCEEEecCC
Confidence 89999998889999999999999999999999999973 21 1 112222222 4 899989998
Q ss_pred CC
Q 005009 314 PQ 315 (719)
Q Consensus 314 ~~ 315 (719)
+.
T Consensus 304 ~~ 305 (334)
T 3iqw_A 304 VE 305 (334)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 257
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=97.54 E-value=6.4e-05 Score=79.45 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=52.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~ 696 (719)
++.+|++... +...|.+.+ +|+++||+++|+||+|+.+.+. .....+ |+++ ++|.+|.+
T Consensus 141 ~~k~v~~~~~-~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~~-- 201 (360)
T 1w23_A 141 NDAYLHITSN-NTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGPS-- 201 (360)
T ss_dssp TEEEEEEESE-ETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSCT--
T ss_pred CCCEEEEeCC-CCCcceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCCC--
Confidence 5778888876 888888764 3444899999999999754332 112222 7875 45999732
Q ss_pred chheeEeCHHHHhhhc
Q 005009 697 PLAATLATNAVFDSFV 712 (719)
Q Consensus 697 Plsavl~~~~i~~~~~ 712 (719)
.+|.+++++++.+.+.
T Consensus 202 G~G~~~~~~~~~~~~~ 217 (360)
T 1w23_A 202 GVTVVIVKKDLLNTKV 217 (360)
T ss_dssp TCEEEEEEHHHHCSCC
T ss_pred CcEEEEEcHHHHhhcc
Confidence 3788999999887654
No 258
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.49 E-value=0.00029 Score=82.91 Aligned_cols=167 Identities=18% Similarity=0.207 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHhccCCCCCCeEEEeCCh-HHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 442 YEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv~f~~SG-sEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
+.+..++.++++++++ .++++|+++| +.||.+++... .++.+.|..+...|.+.
T Consensus 194 ~g~i~eaE~~lA~~fG---a~~a~~v~nGts~An~~ai~al----------------------~~pGD~VLv~r~~H~S~ 248 (715)
T 3n75_A 194 SGPHKEAEQYIARVFN---ADRSYMVTNGTSTANKIVGMYS----------------------APAGSTILIDRNCHKSL 248 (715)
T ss_dssp BTHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHH----------------------CCTTCEEEEESSCCHHH
T ss_pred cHHHHHHHHHHHHHhC---CCCceEECcHHHHHHHHHHHHh----------------------CCCCCEEEECCCccHHH
Confidence 4567889999999998 4688888888 58998888766 12234566667777777
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccccccc-CccchhhcccCchhHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFC-SRDEIFYEERDSSDLASI 599 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~-d~~~~~~~~~d~~~~~~~ 599 (719)
..++.++|.... ++++. .+.|. +.++ +.+ .+ |
T Consensus 249 ~~~l~lsGa~pv--------------~v~~~-------------~~~~g--------i~~~i~~~-~~----d------- 281 (715)
T 3n75_A 249 THLMMMSDVTPI--------------YFRPT-------------RNAYG--------ILGGIPQS-EF----Q------- 281 (715)
T ss_dssp HHHHHHSCCEEE--------------EECCC-------------BCTTC--------CBCCCCGG-GG----S-------
T ss_pred HHHHHHcCCEEE--------------EEecc-------------ccccc--------cccCcccc-cC----C-------
Confidence 777776653210 01000 00000 0000 000 00 0
Q ss_pred HHHHHHHHHhcCCCCCCCC-cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-cc-
Q 005009 600 YSSYISQNLLQNPGLKVSG-CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-AD- 676 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~-~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e- 676 (719)
.+.|++.+.+.. ... ..+.|++.| ...|.+.+ +++|.++|++++ +|+||+|.+.-..|..+. ..
T Consensus 282 -~e~Le~~l~~~~---~~k~p~~vivt~p---n~~G~v~d----l~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~a 348 (715)
T 3n75_A 282 -HATIAKRVKETP---NATWPVHAVITNS---TYDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCG 348 (715)
T ss_dssp -HHHHHHHHHHST---TCCSCSEEEEESS---CTTSEEEC----HHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSST
T ss_pred -HHHHHHHHhhCc---CccCceEEEEECC---CCCCccCC----HHHHHHHhCcCc--EEEccccccccccCCccccccc
Confidence 256777887421 001 125677777 34678887 899999998774 799999974222333221 11
Q ss_pred -ccCCCccee-----eehhccCC
Q 005009 677 -LLGCVPDIA-----CYGKLLTG 693 (719)
Q Consensus 677 -~~gv~PDIv-----tlgK~Lgg 693 (719)
..|..+|++ +++|+|+|
T Consensus 349 l~~g~~aD~vii~~~S~hKtL~g 371 (715)
T 3n75_A 349 MSGGRVEGKVIYETQSTHKLLAA 371 (715)
T ss_dssp TSSSCCTTCEEEEEECHHHHSSC
T ss_pred cccCcCCCEEEEEEecccccccC
Confidence 122347864 68999875
No 259
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=97.45 E-value=0.00013 Score=78.70 Aligned_cols=77 Identities=10% Similarity=0.036 Sum_probs=50.6
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~ 696 (719)
++.+|++... +...|.+.+ ++++.++ +|+++|+||+|+.+.+. +..+ .+|+++++ |.+|.+ -
T Consensus 165 ~~~~v~~~~~-~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~-g 228 (398)
T 2fyf_A 165 SVDVIAWAHN-ETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASD-G 228 (398)
T ss_dssp TCSEEEEESE-ETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSC-S
T ss_pred CCCEEEEeCc-CCCcceecc----hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCC-C
Confidence 3456666665 777888877 3334443 99999999999754332 1111 27888654 999865 1
Q ss_pred chheeEeCHHHHhhh
Q 005009 697 PLAATLATNAVFDSF 711 (719)
Q Consensus 697 Plsavl~~~~i~~~~ 711 (719)
-+|++++++++.+.+
T Consensus 229 g~g~l~~~~~~~~~l 243 (398)
T 2fyf_A 229 GLWLAIMSPAALSRI 243 (398)
T ss_dssp SEEEEEECHHHHHHH
T ss_pred ceEEEEECHHHHHHh
Confidence 268889999987765
No 260
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.44 E-value=0.00026 Score=76.75 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.8
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 35 ~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++.|.|++.-.|||||++|+.|+.+|. ++|+||..+=
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La-----~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA-----NMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHH-----HHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 45788999999999999999999999994 6799998876
No 261
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=97.36 E-value=0.00051 Score=81.10 Aligned_cols=66 Identities=24% Similarity=0.172 Sum_probs=42.8
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC---ccccCc---cccccccCCC-cc-ee--eehhc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG---FWRLGV---ETTADLLGCV-PD-IA--CYGKL 690 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG---fGRtG~---~~a~e~~gv~-PD-Iv--tlgK~ 690 (719)
+.++..|. . .|.+.+ +++|.++|++||++||+||+|.+ |+..+. ....+.+|+. |. ++ +++|+
T Consensus 284 lviv~~pn-~--~G~v~d----l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~ 356 (730)
T 1c4k_A 284 LAVIQLGT-Y--DGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQ 356 (730)
T ss_dssp EEEEESBC-T--TSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHH
T ss_pred EEEEECCC-C--CCeecC----HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCC
Confidence 45556674 3 577777 89999999999999999999963 322111 1112233442 22 54 67999
Q ss_pred cCC
Q 005009 691 LTG 693 (719)
Q Consensus 691 Lgg 693 (719)
|+|
T Consensus 357 L~g 359 (730)
T 1c4k_A 357 QAG 359 (730)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 262
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.27 E-value=0.0017 Score=72.05 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
....++++|. +|+||||++..|+..|. ++|++|...-
T Consensus 96 ~~~vI~lvG~-~GsGKTTt~~kLA~~l~-----~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGV-QGSGKTTTAGKLAYFYK-----KRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3456888887 79999999999999995 7799998755
No 263
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=97.18 E-value=0.0015 Score=77.55 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=31.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG 665 (719)
+.++..|- -.|.+.+ +++|.++|++||++||+||+|.+
T Consensus 315 lvil~~pn---~~G~v~d----l~~I~~ia~~~~~~livDeA~~~ 352 (755)
T 2vyc_A 315 YCVVTNCT---YDGVCYN----AKEAQDLLEKTSDRLHFDEAWYG 352 (755)
T ss_dssp CEEEESSC---TTSEEEC----HHHHHHHHTTTCSEEEEECTTCT
T ss_pred EEEEECCC---CCceecC----HHHHHHHHHHcCCEEEEECcCch
Confidence 45666673 2477776 89999999999999999999974
No 264
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=97.12 E-value=0.003 Score=68.09 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=48.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-C----C--------------HHHHHHhhcCCCcEEecCC
Q 005009 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-V----N--------------EVPLMSYLRNRVPVLVLPP 312 (719)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~----~--------------~~~l~~~~~~~~pvlglP~ 312 (719)
-+|+|+....-.+..+..+++.|+..|+++.|||+|++.. . . .+.+.+.++ +.|+.-+|+
T Consensus 233 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~-~~~~~~~pl 311 (348)
T 3io3_A 233 TFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYE-DYHLVKMPL 311 (348)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEEC
T ss_pred EEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHcc-CCCEEEecC
Confidence 3889999888899999999999999999999999999832 1 1 111222221 688888999
Q ss_pred CCC
Q 005009 313 LPQ 315 (719)
Q Consensus 313 ~~~ 315 (719)
.+.
T Consensus 312 ~~~ 314 (348)
T 3io3_A 312 LGC 314 (348)
T ss_dssp CSS
T ss_pred CCC
Confidence 875
No 265
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.09 E-value=0.0016 Score=63.05 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+|+.+.|+| .+|+|||+++..|++.|. ++|++|+.+|
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~-----~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAV-----REGWRVGTVK 39 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhH-----hcCCeeeEEE
Confidence 467899999 579999999999999994 7799999999
No 266
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.08 E-value=0.0072 Score=64.13 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|-|+| --||||||+|.-|..+|. ++|+||..+=
T Consensus 48 aKVIAIaG-KGGVGKTTtavNLA~aLA-----~~GkkVllID 83 (314)
T 3fwy_A 48 AKVFAVYG-KGGIGKSTTSSNLSAAFS-----ILGKRVLQIG 83 (314)
T ss_dssp CEEEEEEC-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEEEC-CCccCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 46899998 789999999999999995 8899998775
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.06 E-value=0.015 Score=61.15 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 35 ~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.....+.|+|. +|+||||++..|+..+. . ++|++|.+.-
T Consensus 103 ~~g~vi~lvG~-~GsGKTTl~~~LA~~l~---~-~~G~~V~lv~ 141 (296)
T 2px0_A 103 IHSKYIVLFGS-TGAGKTTTLAKLAAISM---L-EKHKKIAFIT 141 (296)
T ss_dssp CCSSEEEEEES-TTSSHHHHHHHHHHHHH---H-TTCCCEEEEE
T ss_pred CCCcEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCEEEEEe
Confidence 34567999998 69999999999999984 1 4798888765
No 268
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.05 E-value=0.0044 Score=69.97 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.+.|+|. +||||||++..|+..|. ++|++|...-
T Consensus 100 ~~~vI~ivG~-~GvGKTTl~~kLA~~l~-----~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGL-QGSGKTTTCSKLAYYYQ-----RKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 3457889998 79999999999999994 6699988765
No 269
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=96.86 E-value=0.0022 Score=71.37 Aligned_cols=99 Identities=11% Similarity=-0.034 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.|+++|++. +.+.+++|++-|- ....|...+ +++|.++|++||++|++||.+-+.-+...-+..+.+..
T Consensus 184 ~~~le~aI~~~----~~~~~~~Vv~t~t-~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~ 254 (450)
T 3bc8_A 184 LKAVEAKIQEL----GPEHILCLHSTTA-CFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARV 254 (450)
T ss_dssp HHHHHHHHHHH----CGGGEEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCEEEEEEECC-cCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcc
Confidence 36788888752 2357899999885 333456666 99999999999999999999965433221111111111
Q ss_pred -Ccceeeeh--hccCCCccchheeEe-CHHHHh
Q 005009 681 -VPDIACYG--KLLTGGVIPLAATLA-TNAVFD 709 (719)
Q Consensus 681 -~PDIvtlg--K~LggG~~Plsavl~-~~~i~~ 709 (719)
..|+++++ |-+..- +.-|.+.. .++..+
T Consensus 255 ~~AD~~v~S~HK~l~a~-~~~~~l~~rd~~~~~ 286 (450)
T 3bc8_A 255 GRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQ 286 (450)
T ss_dssp SCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHH
T ss_pred cCCCEEEECCccCCCch-hccEEEEecCHHHHH
Confidence 46888654 444332 34455555 334443
No 270
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=96.79 E-value=0.0025 Score=69.84 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=51.4
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEe--ccccCccccCccccccccCCCcceeee-hhccC---
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD--EVFTGFWRLGVETTADLLGCVPDIACY-GKLLT--- 692 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~D--EVqTGfGRtG~~~a~e~~gv~PDIvtl-gK~Lg--- 692 (719)
++.+|++.-. ...|.+.+ +++|.++|++||+++|+| ++. +|-.... ..+ .+|++++ +|.+|
T Consensus 196 ~t~~v~i~~p--n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a--~g~~~~~---~~~--g~D~~~~s~kk~~~~~ 262 (438)
T 1wyu_A 196 EVGAVVVQNP--NFLGALED----LGPFAEAAHGAGALFVAVADPLS--LGVLKPP---GAY--GADIAVGDGQSLGLPM 262 (438)
T ss_dssp TEEEEEEESS--CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG--GGTBCCH---HHH--TCSEEEEECTTTTCCC
T ss_pred CeEEEEEECC--CCCeEEec----HHHHHHHHHHcCCEEEEEechhh--ccCcCCC---ccC--CCCEEEECCcccCCCc
Confidence 4667776652 45677776 999999999999999955 332 3222111 122 3799887 47543
Q ss_pred --CCccchheeEeCHHHHhhh
Q 005009 693 --GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 693 --gG~~Plsavl~~~~i~~~~ 711 (719)
+| --+|.+++++++.+.+
T Consensus 263 ~~~G-p~~G~l~~~~~~~~~l 282 (438)
T 1wyu_A 263 GFGG-PHFGFLATKKAFVRQL 282 (438)
T ss_dssp GGGC-SCCEEEEECGGGGGGC
T ss_pred cCCC-CCeeEEEEcHHHHHhC
Confidence 23 1367788999887765
No 271
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=96.77 E-value=0.043 Score=59.90 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---cccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADL 677 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~ 677 (719)
+.+++.+.+ .+ +..++++- |- +.=.|.. .+.+-+++|.++|++||+++|.||+..+|..-+. ......
T Consensus 162 ~~l~~~l~~-----~~-~~~~i~l~~~~-~NPTG~~-~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~ 233 (405)
T 3k7y_A 162 DLFLNDLRN-----IP-NGSSVILQISC-YNPCSVN-IEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRK 233 (405)
T ss_dssp HHHHHHHHH-----SC-SSCEEEECCSS-CTTTCCC-CCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHH
T ss_pred HHHHHHHHh-----CC-CCeEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHH
Confidence 556666653 11 22355554 43 4555665 4789999999999999999999999998843221 111111
Q ss_pred c-CCCccee---eehhccC-CCccchheeEe---CHHHHh
Q 005009 678 L-GCVPDIA---CYGKLLT-GGVIPLAATLA---TNAVFD 709 (719)
Q Consensus 678 ~-gv~PDIv---tlgK~Lg-gG~~Plsavl~---~~~i~~ 709 (719)
+ ...+.++ +|||.++ .| +-+|.+++ ++++.+
T Consensus 234 ~~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~ 272 (405)
T 3k7y_A 234 FEEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKK 272 (405)
T ss_dssp HHTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHH
T ss_pred HHhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHH
Confidence 1 2223333 7999998 67 67887643 565544
No 272
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.61 E-value=0.03 Score=59.43 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
...+.|+|. +|+|||+++..|+..+. .+|.+|...
T Consensus 105 ~~vI~ivG~-~G~GKTT~~~~LA~~l~-----~~g~kVlli 139 (320)
T 1zu4_A 105 LNIFMLVGV-NGTGKTTSLAKMANYYA-----ELGYKVLIA 139 (320)
T ss_dssp CEEEEEESS-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEE
Confidence 457999998 99999999999999994 668888765
No 273
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.53 E-value=0.052 Score=56.97 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=31.9
Q ss_pred CCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 31 LDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 31 ~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.+......+.|+|. +|+|||+++..|+..+. .+|.+|...-
T Consensus 92 i~~~~~~~vi~i~G~-~G~GKTT~~~~la~~~~-----~~g~~v~l~~ 133 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGV-QGTGKTTTAGKLAYFYK-----KKGFKVGLVG 133 (297)
T ss_dssp CSCSSSSEEEEEECS-SCSSTTHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cccCCCCeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 433334456788885 89999999999999994 6688887654
No 274
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.45 E-value=0.012 Score=65.11 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...+.|+|. +|+|||+++..|+..+. ++|++|..+-
T Consensus 99 ~~vI~ivG~-~GvGKTTla~~La~~l~-----~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGI-QGSGKTTTAAKLARYIQ-----KRGLKPALIA 134 (432)
T ss_dssp CCCEEEECC-SSSSTTHHHHHHHHHHH-----HHHCCEEEEC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 357999997 89999999999999994 6789998765
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.39 E-value=0.029 Score=59.27 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCCCCC-CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 30 PLDLPL-SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 30 ~~~~~~-~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
++.+.. +...++|+|. +|+||||++..|+..+. .+|.+|...
T Consensus 96 ~~~~~~~~~~vi~ivG~-~GsGKTTl~~~LA~~l~-----~~g~kV~lv 138 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGV-NGTGKTTSCGKLAKMFV-----DEGKSVVLA 138 (306)
T ss_dssp CCCCCSSSCEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CCcccCCCCeEEEEEcC-CCChHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 444422 3456899998 99999999999999994 568888764
No 276
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=96.37 E-value=0.0087 Score=66.68 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc--cC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL--LG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~--~g 679 (719)
+.++++|++ .+.+.+++|+..|- .-.++...+ +++|.++|++|||++++||.+-+.-+...-+-.+. +|
T Consensus 203 e~le~aI~e----~ga~~i~~V~~Ttt-~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~G 273 (501)
T 3hl2_A 203 KAVEAKVQE----LGPDCILCIHSTTS-CFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG 273 (501)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEECS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh----cCCCcEEEEEecCC-CCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcC
Confidence 667888875 23578999998873 222345455 99999999999999999999954322222211122 24
Q ss_pred CCcceeeeh-hccCCCccchheeEe---CHHHHhhh
Q 005009 680 CVPDIACYG-KLLTGGVIPLAATLA---TNAVFDSF 711 (719)
Q Consensus 680 v~PDIvtlg-K~LggG~~Plsavl~---~~~i~~~~ 711 (719)
..|+++.+ +-. ++.|+++-++ .+++++.+
T Consensus 274 -rAD~vVqS~HK~--llvpIGG~ii~~~d~e~l~~~ 306 (501)
T 3hl2_A 274 -RIDAFVQSLDKN--FMVPVGGAIIAGFNDSFIQEI 306 (501)
T ss_dssp -CCCEEEEEHHHH--HCCCSSCEEEEESCHHHHHHH
T ss_pred -CCcEEEeccccc--ceeecCceEEEeCCHHHHHHH
Confidence 58988764 222 2566655333 55666654
No 277
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.31 E-value=0.051 Score=56.89 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=32.9
Q ss_pred CCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 29 QPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 29 ~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++.+. ....+.|+|. +|+|||+++..|+..+. .+|.+|...-
T Consensus 91 ~~i~~~-~~~~i~i~g~-~G~GKTT~~~~la~~~~-----~~~~~v~l~~ 133 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (295)
T ss_dssp CCCCCC-SSEEEEEECC-TTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceeecC-CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 445554 5567888885 79999999999999994 5678886653
No 278
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=96.22 E-value=0.012 Score=62.11 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=41.8
Q ss_pred CHHHHHHHHHhhhhccccc-----CCCC---CChHHHHHHHHHHhccCCCCCC-e-EEEeCChHHHHHHHHHHH
Q 005009 418 QIELARDMGYTAARFGHVM-----FPEN---VYEPALECAELLLQGVGKGWAS-R-AYFSDNGSTAIEIALKMA 481 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~-----~~~~---~~~~~~~Lae~L~~~~~~~~~~-r-v~f~~SGsEA~E~AlKlA 481 (719)
+|+|.+|+.+.+..+.... .... ..+...++.++|+++.+.+ .+ . ++++++|++|+..+++..
T Consensus 16 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~i~~t~g~t~a~~~~~~~l 88 (362)
T 2c0r_A 16 PLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFAMIPMNF 88 (362)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCC-CCcEEEEECCCchHHHHHHHHhc
Confidence 8999999999886531100 0001 1224567888888877743 22 5 467799999999998866
No 279
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=95.94 E-value=0.066 Score=57.56 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=33.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|.|++.-.|||||++|+.|..+|. ++|+||..+=
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA-----~~G~rVLlID 37 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFA-----LQGKRVLYVD 37 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHH-----hCCCcEEEEE
Confidence 578999999999999999999999994 7899998875
No 280
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.61 E-value=0.031 Score=60.91 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCC-CCCCCCceeEEc
Q 005009 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLK 78 (719)
Q Consensus 35 ~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~-~~~~g~~v~~~K 78 (719)
.+++.|.|++.-.|||||++|+.|..+|.... ..++|+||...=
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD 153 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 35678999999999999999999999993000 002588987765
No 281
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=94.16 E-value=0.35 Score=53.09 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=50.0
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---ccccccc-CCCccee---eehhccC
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDIA---CYGKLLT 692 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~~-gv~PDIv---tlgK~Lg 692 (719)
...++.-+= +.=.|.. ++.+.|++|.++|+++++++|+||+..||.--+. .+....+ ...+.++ .|+|.++
T Consensus 191 ~~vll~~~p-~NPtG~~-~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 268 (420)
T 4h51_A 191 SVFILHQCA-HNPTGVD-PSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG 268 (420)
T ss_dssp CEEEEESSS-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred cEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc
Confidence 334444432 3444654 5899999999999999999999999999853322 1211111 1223333 6899776
Q ss_pred C-CccchheeEe
Q 005009 693 G-GVIPLAATLA 703 (719)
Q Consensus 693 g-G~~Plsavl~ 703 (719)
- | .=+|++++
T Consensus 269 ~~G-~RvG~~~~ 279 (420)
T 4h51_A 269 LYS-ERAGTLSL 279 (420)
T ss_dssp CGG-GCEEEEEE
T ss_pred ccc-CceEEEEe
Confidence 2 4 34555554
No 282
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.63 E-value=1.7 Score=48.79 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
..+.|.|. +|+||||+...|+..+. ..+.+|...
T Consensus 294 eVI~LVGp-NGSGKTTLl~~LAgll~-----~~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGV-NGVGKTTTIGKLARQFE-----QQGKSVMLA 327 (503)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred eEEEEECC-CcccHHHHHHHHHHHhh-----hcCCeEEEe
Confidence 36889999 69999999999999884 456677654
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.65 E-value=0.08 Score=51.44 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=22.9
Q ss_pred ccCCCchhHHHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 5 RRHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..||||++.....+.= .++..+ +++.++|.|. +|+|||+++..|++.+
T Consensus 2 ~~~~~~~~~~~~~~~~---~~~~~~------~~~~i~l~G~-~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 2 HHHHHHSSGVDLGTEN---LYFQSN------AMVRIFLTGY-MGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------------------CCCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CcccCCCCCCCCCCCc---eeEecC------CCCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence 3588888776543322 222222 2457999998 9999999999999998
No 284
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.05 E-value=0.82 Score=47.96 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.+-.+|+|||++++-++..+. .+|.+|.||=
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a-----~~g~~vl~~s 103 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 103 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH-----TTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 4666667799999999999997774 5678888875
No 285
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.95 E-value=0.14 Score=49.33 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+++.+.|+| -+|+|||++...|++.+. .+|++|+.+|
T Consensus 5 ~~~~i~i~G-~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~ 41 (174)
T 1np6_A 5 MIPLLAFAA-WSGTGKTTLLKKLIPALC-----ARGIRPGLIK 41 (174)
T ss_dssp CCCEEEEEC-CTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cceEEEEEe-CCCCCHHHHHHHHHHhcc-----ccCCceeEEe
Confidence 577899999 589999999999999984 6799999888
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.83 E-value=3.8 Score=43.37 Aligned_cols=35 Identities=17% Similarity=0.032 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
-..+.|.|. +|+||||+...|+..+. ..|.+|...
T Consensus 129 g~vi~lvG~-nGaGKTTll~~Lag~l~-----~~~g~V~l~ 163 (328)
T 3e70_C 129 PYVIMFVGF-NGSGKTTTIAKLANWLK-----NHGFSVVIA 163 (328)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 346889999 89999999999999984 556677654
No 287
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.63 E-value=0.093 Score=50.52 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
||+.+.|+| .+|+||||++..|++.+. .+|++++.+|.
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~ 38 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILR-----ERGLRVAVVKR 38 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhh-----hcCCceEEEEE
Confidence 467899999 689999999999999994 66888999884
No 288
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.63 E-value=1.1 Score=49.39 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.+..+|+|||++++-++.... .+|.+|.||=
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a-----~~g~~vl~fS 232 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 232 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHH-----HTTCEEEEEC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHH-----HcCCEEEEEE
Confidence 3666666799999999999998884 4588999985
No 289
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=89.99 E-value=0.19 Score=54.51 Aligned_cols=68 Identities=6% Similarity=-0.051 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccCC----CCC----ChHHHHHHHHHHhccCCCCCCeEEEe-CChHHHHHHHHHHH
Q 005009 413 PDATLQIELARDMGYTAARFGHVMFP----ENV----YEPALECAELLLQGVGKGWASRAYFS-DNGSTAIEIALKMA 481 (719)
Q Consensus 413 lGH~~hP~V~~Av~~q~~~~~~~~~~----~~~----~~~~~~Lae~L~~~~~~~~~~rv~f~-~SGsEA~E~AlKlA 481 (719)
-+-- +|+|.+|+.+.+..+...... ... .+...+.-++|+++++-+.-+.++|+ .+|+||++.|++-.
T Consensus 21 ~~~~-p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l 97 (377)
T 3e77_A 21 QSML-PHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNL 97 (377)
T ss_dssp SCCC-CHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhc
Confidence 3445 899999999988653321110 111 23344555667777664312468884 79999999999866
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.87 E-value=0.38 Score=45.42 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
|+.|+|+|. .|+||||++..|.+.|. ..|+.+.++
T Consensus 1 M~~I~i~G~-~GsGKsT~~~~L~~~l~-----~~g~~~~~~ 35 (194)
T 1nks_A 1 MKIGIVTGI-PGVGKSTVLAKVKEILD-----NQGINNKII 35 (194)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hcCceEEEE
Confidence 357899998 89999999999999994 567777766
No 291
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=88.25 E-value=0.63 Score=49.86 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=42.7
Q ss_pred EEEEE-EccccccCCccccCCHHHHHHHHHHHHh-cC--CcEEEeccccCccccCccccccccCCCccee--eehhccC-
Q 005009 620 IGALI-IEPVVHAAGGMHMVDPLFQRILVKECQN-RK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT- 692 (719)
Q Consensus 620 iAAvI-vEPViqg~gG~~~pp~~fl~~Lr~Lc~k-~g--ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lg- 692 (719)
..+|+ .-| +.-.|.+.. +||++ |+ +++|.||++. ++.. ..+.. .. ..+|+ +++|.+|
T Consensus 158 ~k~v~l~~p--~NPtG~~~~---------~l~~~~~~~~~~ii~De~y~-~~~~-~~l~~-~~--~~~i~~~S~SK~~g~ 221 (391)
T 3bwn_A 158 PYIELVTSP--NNPDGTIRE---------TVVNRPDDDEAKVIHDFAYY-WPHY-TPITR-RQ--DHDIMLFTFSKITGH 221 (391)
T ss_dssp CEEEEEESS--CTTTCCCCC---------CCC-----CCCEEEEECTTC-STTT-SCCCC-CB--CCSEEEEEHHHHHSC
T ss_pred CEEEEECCC--CCCCchhHH---------HHHHHhhcCCCEEEEeCCCC-CCCC-Ccccc-CC--CCeEEEEechhhcCC
Confidence 34444 445 455566653 23444 66 9999999996 3211 11111 11 22343 7999997
Q ss_pred CCccchheeEe-CHHHHhhhc
Q 005009 693 GGVIPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~-~~~i~~~~~ 712 (719)
.| +-+|.+++ ++++.+.+.
T Consensus 222 ~G-lRiG~~~~~~~~l~~~l~ 241 (391)
T 3bwn_A 222 AG-SRIGWALVKDKEVAKKMV 241 (391)
T ss_dssp GG-GCEEEEEECCHHHHHHHH
T ss_pred Cc-cceEEEEecCHHHHHHHH
Confidence 56 57788887 888877653
No 292
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.21 E-value=0.54 Score=50.23 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=29.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.+-.+|+|||++++-++..+. ..|.+|.||-
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a-----~~g~~Vl~fS 81 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSAL-----NDDRGVAVFS 81 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-----HTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3666677799999999999999884 5688999986
No 293
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.95 E-value=0.51 Score=45.49 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=24.1
Q ss_pred CCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 29 QPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 29 ~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
-|...+.+...|+|+|. .|+|||+++..|.+.+
T Consensus 12 ~~~~~~~~~~~I~l~G~-~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 12 SGLVPRGSHMRVLLLGP-PGAGKGTQAVKLAEKL 44 (201)
T ss_dssp ----CCCSCCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 34444444447899998 8999999999999988
No 294
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=87.51 E-value=0.39 Score=51.91 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCC-CCCCCCceeEEc
Q 005009 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLK 78 (719)
Q Consensus 35 ~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~-~~~~g~~v~~~K 78 (719)
.+++.|.|++.-.|||||++++.|..+|.... ..++|+||..+=
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 35678999999999999999999999993000 002589987765
No 295
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=87.23 E-value=1.6 Score=49.12 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCCeEEEEc-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~g-t~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+++-||||| .=++.||-++++.|.+.|+ .+|++|...|
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~-----~~g~~v~~~k 40 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLK-----RRGYNVTAVK 40 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHH-----HCCceEEEEe
Confidence 467899998 7799999999999999994 8999999999
No 296
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.63 E-value=4.1 Score=44.65 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=28.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.+-.+|+|||++++-++.... . +.|.+|.||=
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a---~-~~g~~vl~~s 236 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAA---L-KEGVGVGIYS 236 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH---H-TTCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCeEEEEE
Confidence 3555556699999999999998874 2 3588899876
No 297
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.29 E-value=0.74 Score=44.24 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.++|+|. +|+|||+++.+|+..+. ++|.++.++.
T Consensus 55 ~~~~l~G~-~GtGKT~la~~i~~~~~-----~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGS-FGVGKTYLLAAIANELA-----KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 57999997 89999999999999994 6677877754
No 298
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.26 E-value=0.71 Score=42.95 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
||+.|+|+|. .|+|||+++..|.+.|
T Consensus 1 m~~~I~l~G~-~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGA-RGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESC-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEECC-CCCCHHHHHHHHHHHh
Confidence 3567999997 8999999999999988
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.07 E-value=0.78 Score=43.35 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+++.|+|+|. +|+|||+++..|.+.+
T Consensus 4 ~~~~i~l~G~-~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGL-MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHh
Confidence 3567999999 9999999999999998
No 300
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.96 E-value=0.32 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|+|+|. |++|||+++..|++.|
T Consensus 41 ~lIvI~GP-TgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGA-TGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHTTS
T ss_pred ceEEEECC-CCCCHHHHHHHHHHHC
Confidence 36899999 9999999999998887
No 301
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.81 E-value=7.6 Score=41.56 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=28.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.|. .|+|||+++..++..+. ..|.+|.|+-
T Consensus 63 i~~I~Gp-pGsGKSTLal~la~~~~-----~~gg~VlyId 96 (356)
T 3hr8_A 63 IVEIFGQ-ESSGKTTLALHAIAEAQ-----KMGGVAAFID 96 (356)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 5677777 99999999999999984 5688899875
No 302
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=84.27 E-value=7.5 Score=43.17 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=28.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+.+-.+|+|||++++-++..+. . +.|.+|.||=
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a---~-~~g~~vl~~s 278 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWG---T-AMGKKVGLAM 278 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHT---T-TSCCCEEEEE
T ss_pred eEEEEeecCCCCchHHHHHHHHHHH---H-hcCCcEEEEe
Confidence 3555556699999999999999883 1 3388999885
No 303
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=84.15 E-value=0.79 Score=44.77 Aligned_cols=36 Identities=19% Similarity=0.008 Sum_probs=30.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (719)
-.+++|+ .|+|||+..+.+++.+. .+|++|..+||.
T Consensus 10 i~v~~G~-mgsGKTT~ll~~a~r~~-----~~g~kV~v~k~~ 45 (191)
T 1xx6_A 10 VEVIVGP-MYSGKSEELIRRIRRAK-----IAKQKIQVFKPE 45 (191)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEec
Confidence 4667766 79999999999998884 789999999985
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.98 E-value=0.71 Score=42.73 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|+.|+|+|. +|+||||++..|.+.+
T Consensus 1 M~~i~l~G~-~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 1 MTLIILEGP-DCCFKSTVAAKLSKEL 25 (173)
T ss_dssp -CEEEEECS-SSSSHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 457889998 9999999999999988
No 305
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=83.91 E-value=0.8 Score=45.94 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=30.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (719)
.++|+|. +|+|||+..+.++..+. .+|.+|.+++|.
T Consensus 14 i~litG~-mGsGKTT~ll~~~~r~~-----~~g~kVli~~~~ 49 (223)
T 2b8t_A 14 IEFITGP-MFAGKTAELIRRLHRLE-----YADVKYLVFKPK 49 (223)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----hcCCEEEEEEec
Confidence 4666665 79999999999998884 779999999984
No 306
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.28 E-value=0.84 Score=42.75 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|+|+|. +|+|||+++..|.+.|
T Consensus 4 ~~i~l~G~-~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGG-SSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHS
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 46889998 8999999999999988
No 307
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=83.23 E-value=1.1 Score=43.35 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=30.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (719)
.++|+|+ .|+|||+..+.++..+. .+|++|.+++|.
T Consensus 5 i~vi~G~-~gsGKTT~ll~~~~~~~-----~~g~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGP-MYSGKTTELLSFVEIYK-----LGKKKVAVFKPK 40 (184)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCEEEEEEEC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEeec
Confidence 5778887 79999999988888774 678999999974
No 308
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=83.03 E-value=0.98 Score=44.49 Aligned_cols=42 Identities=14% Similarity=-0.031 Sum_probs=29.1
Q ss_pred CCCCCCCeEEEEcCCCCCcHH-HHHHHHHHHhhcCCCCCCCCceeEEccc
Q 005009 32 DLPLSHPTFQIWSANTSLGKT-LVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (719)
Q Consensus 32 ~~~~~~~~~~I~gt~t~vGKT-~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (719)
....+.+-+||+|+ .++||| .+-..+-+.. .+|++|.++||-
T Consensus 15 ~~~~~g~l~fiyG~-MgsGKTt~Ll~~i~n~~------~~~~kvl~~kp~ 57 (195)
T 1w4r_A 15 GSKTRGQIQVILGP-MFSGKSTELMRRVRRFQ------IAQYKCLVIKYA 57 (195)
T ss_dssp ----CCEEEEEEEC-TTSCHHHHHHHHHHHHH------HTTCCEEEEEET
T ss_pred CCCCceEEEEEECC-CCCcHHHHHHHHHHHHH------HcCCeEEEEccc
Confidence 33345567899998 899999 5555555554 568999999983
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.82 E-value=1 Score=42.43 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|+|+|. +|+|||+++..|.+.+
T Consensus 11 ~~~i~i~G~-~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGT-PGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeC-CCCCHHHHHHHHHHHh
Confidence 456899998 8999999999999988
No 310
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.68 E-value=14 Score=39.60 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=27.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|+| ..|+|||++++-|+..+. ++|.+|.|+-
T Consensus 76 li~I~G-~pGsGKTtlal~la~~~~-----~~g~~vlyi~ 109 (366)
T 1xp8_A 76 ITEIYG-PESGGKTTLALAIVAQAQ-----KAGGTCAFID 109 (366)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEEc-CCCCChHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 466666 589999999999998884 5688999987
No 311
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.63 E-value=1.3 Score=42.02 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=28.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|+|. .|+|||+++..|+..+. ..|.++.++.
T Consensus 14 ~~i~l~G~-~GsGKsT~~~~L~~~l~-----~~~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGL-PGSGKTTIATRLADLLQ-----KEGYRVEVLD 48 (186)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cEEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEee
Confidence 35788888 89999999999999994 5677776653
No 312
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=82.43 E-value=0.85 Score=42.85 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|+.++|+|. .|+|||+++..|.+.+
T Consensus 4 m~~i~i~G~-~GsGKsTla~~La~~l 28 (175)
T 1via_A 4 AKNIVFIGF-MGSGKSTLARALAKDL 28 (175)
T ss_dssp -CCEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence 567999998 8999999999999988
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.40 E-value=1.2 Score=41.55 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|..++|+|. .|+|||+++..|.+.|
T Consensus 7 ~~~i~l~G~-~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGF-MGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESC-TTSSHHHHHHHHHHHH
T ss_pred cceEEEECC-CCCCHHHHHHHHHHHh
Confidence 568999998 8999999999999988
No 314
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.34 E-value=0.98 Score=43.49 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 34 ~~~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..+++.|+|+|. +|+||||++..|.+.+
T Consensus 15 ~~~~~~I~l~G~-~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 15 RRFPGSIVVMGV-SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CCCSSCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 345667999998 8999999999999988
No 315
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=81.98 E-value=1.6 Score=46.46 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+.|+|. .|+|||+++..|+..+. .+|++|..+-
T Consensus 79 ~~~I~i~G~-~G~GKSTl~~~L~~~l~-----~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGV-PGVGKSTAIEALGMHLI-----ERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCceEEEe
Confidence 347899997 99999999999999994 6789987765
No 316
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=81.71 E-value=1.2 Score=42.14 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|+|+|. .|+|||+++..|.+.+
T Consensus 3 ~~I~l~G~-~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGL-PGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHc
Confidence 46899998 9999999999999988
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.53 E-value=1.6 Score=41.02 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
..|+|+|. +|+||||++..|.+.+.
T Consensus 4 ~~I~i~G~-~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGV-PGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 36889998 89999999999999983
No 318
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=80.87 E-value=1.5 Score=43.73 Aligned_cols=37 Identities=16% Similarity=0.005 Sum_probs=29.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (719)
-.+++|+ -++|||+..++++..+. .+|++|..|||..
T Consensus 30 l~vitG~-MgsGKTT~lL~~a~r~~-----~~g~kVli~k~~~ 66 (214)
T 2j9r_A 30 IEVICGS-MFSGKSEELIRRVRRTQ-----FAKQHAIVFKPCI 66 (214)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEECC-
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEecc
Confidence 3455554 59999999999998884 7899999999854
No 319
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=80.66 E-value=0.91 Score=42.63 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+++.|+|+|. .|+|||+++..|.+.+
T Consensus 4 ~~~~I~l~G~-~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGP-FGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECC-C----CHHHHHHHHHS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHhc
Confidence 3457899998 8999999999998887
No 320
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=79.98 E-value=1.3 Score=41.22 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
-..++|+|. +|+|||++..+|+..+. .+|+++.++.
T Consensus 36 g~~~~l~G~-~G~GKTtL~~~i~~~~~-----~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGE-EGAGKSHLLQAWVAQAL-----EAGKNAAYID 71 (149)
T ss_dssp CSEEEEESS-STTTTCHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHH-----hcCCcEEEEc
Confidence 357999998 99999999999999984 5588888775
No 321
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=79.53 E-value=2.4 Score=42.21 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+..--.|||||+++..|+..+ .+|++|...-
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l------~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYL------EDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH------TTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH------HCCCeEEEEe
Confidence 445555569999999999999999 3588887654
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=79.50 E-value=1.3 Score=42.40 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=24.5
Q ss_pred CCCCCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 33 ~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+..++.|+|+|. .|+|||+++..|++.+
T Consensus 11 ~~~~~~~I~l~G~-~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 11 SPDQVSVIFVLGG-PGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CTTTCEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCCCCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 3455668999998 8999999999999887
No 323
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=78.68 E-value=1.4 Score=46.10 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.++|+|. +|+|||+++.+|+..+. . ++|.+|.++-
T Consensus 152 ~~~lll~G~-~GtGKT~La~aia~~~~---~-~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGD-MGIGKSYLLAAMAHELS---E-KKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECS-TTSSHHHHHHHHHHHHH---H-HSCCCEEEEE
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCcEEEEE
Confidence 357999998 99999999999999883 1 3477777765
No 324
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.45 E-value=1.9 Score=41.78 Aligned_cols=36 Identities=11% Similarity=0.280 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.++|+|. +|+|||+++..+++.+. ..|.++.++.
T Consensus 52 ~~~~ll~G~-~G~GKT~la~~l~~~~~-----~~~~~~~~~~ 87 (242)
T 3bos_A 52 VQAIYLWGP-VKSGRTHLIHAACARAN-----ELERRSFYIP 87 (242)
T ss_dssp CSEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 357999998 89999999999999984 5577777765
No 325
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=78.45 E-value=1.2 Score=41.94 Aligned_cols=36 Identities=8% Similarity=0.160 Sum_probs=29.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|+|. +|+|||+++.+|+..+. . .+|.++.++.
T Consensus 39 ~~~~l~G~-~G~GKTtL~~~i~~~~~---~-~~g~~~~~~~ 74 (180)
T 3ec2_A 39 KGLTFVGS-PGVGKTHLAVATLKAIY---E-KKGIRGYFFD 74 (180)
T ss_dssp CEEEECCS-SSSSHHHHHHHHHHHHH---H-HSCCCCCEEE
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHH---H-HcCCeEEEEE
Confidence 47899997 89999999999999983 2 4577777654
No 326
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.55 E-value=13 Score=39.32 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=27.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC--CCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA--NKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~--g~~v~~~K 78 (719)
.+.|.|. .|+|||++++-++..+. ++ |.++.|+-
T Consensus 30 iteI~G~-pGsGKTtL~Lq~~~~~~-----~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGP-SKSFKSNFGLTMVSSYM-----RQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEES-SSSSHHHHHHHHHHHHH-----HHCTTCEEEEEE
T ss_pred eEEEECC-CCCCHHHHHHHHHHHHH-----hcCCCceEEEEe
Confidence 3678887 99999999999998884 33 77888865
No 327
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=77.32 E-value=2 Score=47.99 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCeEEEEcCCC---CCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 37 HPTFQIWSANT---SLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 37 ~~~~~I~gt~t---~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
.+.|+||++.. |-|||++|.+|..+|. +.|+||...
T Consensus 57 ~K~IlVTS~~PTP~GEGKSTtsinLA~alA-----~~GkkVLLi 95 (557)
T 3pzx_A 57 GKLILVTAITPTPAGEGKTTTSVGLTDALA-----RLGKRVMVC 95 (557)
T ss_dssp CEEEEEEESCCCTTCCCHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CcEEEEEcCCCCCCCCCchhHHHHHHHHHH-----HcCCeEEEE
Confidence 46899999999 9999999999999994 789998765
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=76.58 E-value=1.7 Score=41.91 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=21.2
Q ss_pred CCCCCCCCCC-----CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 28 PQPLDLPLSH-----PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 28 ~~~~~~~~~~-----~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
++++-...+| ..+.|+|. +|+||||++..|+..+
T Consensus 15 ~~~~~~~~~m~~~~g~~i~l~G~-~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 15 TENLYFQSMMTGEPTRHVVVMGV-SGSGKTTIAHGVADET 53 (200)
T ss_dssp -------------CCCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred chhhHHHhhhcCCCCcEEEEECC-CCCCHHHHHHHHHHhh
Confidence 4555544444 35888998 8999999999998887
No 329
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=76.49 E-value=1.8 Score=40.64 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
++.|.|+|. .|+|||+++..|.+.+
T Consensus 6 ~~~I~l~G~-~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGG-PGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHh
Confidence 356889998 8999999999999988
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=75.81 E-value=2.2 Score=40.39 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
-|.|+|. .|+||||++..|.+.|. ..|..|...+
T Consensus 2 ~I~l~G~-~GsGKsT~~~~L~~~l~-----~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGI-DGSGKSTQIQLLAQYLE-----KRGKKVILKR 35 (197)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HCCC-EEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEee
Confidence 3778887 89999999999999994 6688876554
No 331
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=75.81 E-value=2.1 Score=42.34 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=23.9
Q ss_pred CCCCCCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 32 DLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 32 ~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..+..+..|+|.|. .|+|||+++..|++.|
T Consensus 11 ~~~~~~~~I~l~G~-~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 11 PESPKGVRAVLLGP-PGAGKGTQAPKLAKNF 40 (233)
T ss_dssp ---CCCCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 33445667999998 7999999999999998
No 332
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=75.22 E-value=2.4 Score=40.66 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|..+.|+|. .|+||||++..|.. +
T Consensus 1 m~~i~i~G~-~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 1 MKRIGLTGN-IGCGKSTVAQMFRE-L 24 (204)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHH-T
T ss_pred CeEEEEECC-CCcCHHHHHHHHHH-C
Confidence 357899998 89999999988887 6
No 333
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=75.18 E-value=3 Score=42.02 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=26.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 41 ~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+--.|||||++++.+...+. ++|++|...-
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~-----~~G~~V~v~d 41 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQL-----RQGVRVMAGV 41 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-----HCCCCEEEEE
Confidence 44445599999999999999995 7799886443
No 334
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.83 E-value=1.8 Score=43.83 Aligned_cols=25 Identities=20% Similarity=0.188 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|+.++|+|. +|+|||+++..|++.+
T Consensus 1 M~li~I~G~-~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 1 MLLHLIYGP-TCSGKTDMAIQIAQET 25 (253)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCcCHHHHHHHHHhcC
Confidence 346889998 9999999999999988
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=74.22 E-value=3.2 Score=39.79 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=28.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..|.|+|. .|+||||++..|.+.|. ..|+.+..+.
T Consensus 10 ~~I~l~G~-~GsGKsT~~~~L~~~l~-----~~~~~v~~~~ 44 (215)
T 1nn5_A 10 ALIVLEGV-DRAGKSTQSRKLVEALC-----AAGHRAELLR 44 (215)
T ss_dssp CEEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEee
Confidence 35889998 89999999999999983 5577775553
No 336
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=74.13 E-value=2.2 Score=42.01 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=28.9
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.+++.=|+.|.|||+.+.|++-... .+|+||.++.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~-----g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV-----GHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 45555556778999999999987764 8899999994
No 337
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=74.02 E-value=2.3 Score=39.51 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..+.|+|. +|+||||++..|...+
T Consensus 5 ~~i~l~G~-~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGP-MGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECC-TTSCHHHHHHHHHHHT
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHh
Confidence 46899998 8999999999998887
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=73.93 E-value=2.6 Score=42.63 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCcee
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFV 75 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~ 75 (719)
|+.|+|+|. .|+|||+++..|.+.|. ..|..+.
T Consensus 4 ~~lIvl~G~-pGSGKSTla~~La~~L~-----~~g~~~i 36 (260)
T 3a4m_A 4 IMLIILTGL-PGVGKSTFSKNLAKILS-----KNNIDVI 36 (260)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEE
T ss_pred CEEEEEEcC-CCCCHHHHHHHHHHHHH-----hCCCEEE
Confidence 457899999 99999999999999983 4566554
No 339
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=73.33 E-value=2.7 Score=39.65 Aligned_cols=25 Identities=8% Similarity=0.116 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
++.|+|+|. .|+|||+++..|.+.+
T Consensus 9 ~~~I~l~G~-~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGG-PGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHh
Confidence 357899998 8999999999999988
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=72.51 E-value=2 Score=41.46 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=22.5
Q ss_pred cccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 22 HHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|||+-.-|... ++..+.|+|. +|+||||++..|.+.+
T Consensus 9 ~~~~~~~~~~~---~~~~i~i~G~-~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 9 HHSSGLVPRGS---KTFIIGISGV-TNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -----CCCCSC---CCEEEEEEES-TTSSHHHHHHHHHTTS
T ss_pred cccccccccCC---CCeEEEEECC-CCCCHHHHHHHHHHhc
Confidence 45554433332 2346889998 7999999998887665
No 341
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=72.39 E-value=2.9 Score=38.21 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|. +|+|||+++..| +.+
T Consensus 3 ~I~l~G~-~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGM-PGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECC-TTSCHHHHHHHH-HHT
T ss_pred EEEEECC-CCCCHHHHHHHH-HHC
Confidence 5888998 999999999999 655
No 342
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=72.22 E-value=3.9 Score=38.94 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|. .|+||||++..|.+.|
T Consensus 6 ~I~i~G~-~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGI-DGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHH
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHH
Confidence 5888888 8999999999999999
No 343
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=72.17 E-value=1.2 Score=42.88 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=27.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.|.|.|. +|+||||++..|.+.|. ..|.+|..++
T Consensus 2 ~I~i~G~-~GsGKsTl~~~L~~~l~-----~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGV-DGAGKRTLVEKLSGAFR-----AAGRSVATLA 35 (214)
T ss_dssp EEEEEEE-EEEEHHHHHHHHHHHHH-----EEEEEEEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 4778887 89999999999999994 5677777665
No 344
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.07 E-value=2.2 Score=45.22 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. ||+|||+++..|++.+
T Consensus 6 ~~i~i~Gp-tGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGP-TAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHc
Confidence 46889998 9999999999999988
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=72.00 E-value=3 Score=39.13 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=27.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|+|. .|+||||++..|.+.+. ..|..+....
T Consensus 2 ~I~l~G~-~GsGKsT~~~~L~~~l~-----~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGI-DGSGKTTQAKKLYEYLK-----QKGYFVSLYR 35 (195)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 4788888 89999999999999883 4577776553
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=71.76 E-value=3.6 Score=37.90 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|.|+|. .|+|||+++..|.+.+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGF-MCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESC-TTSCHHHHHHHHHHHH
T ss_pred eEEEECC-CCCCHHHHHHHHHHHh
Confidence 5889998 8999999999999988
No 347
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=71.71 E-value=3.3 Score=39.32 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++|+|. .|+|||+++..|.+.+
T Consensus 10 ~~~I~l~G~-~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 10 GINILITGT-PGTGKTSMAEMIAAEL 34 (184)
T ss_dssp SCEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhc
Confidence 457999998 9999999999998883
No 348
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=71.49 E-value=2.4 Score=44.72 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|+ |+||||+++..|++.+
T Consensus 11 ~~i~i~Gp-tgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGP-TASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred cEEEEECC-CccCHHHHHHHHHHhC
Confidence 45777887 9999999999999987
No 349
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=71.44 E-value=27 Score=45.56 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=29.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+.+-..|+|||++++-++..+. ..|.+|.|+.
T Consensus 733 ~lilIaG~PG~GKTtLalqlA~~~a-----~~g~~VlyiS 767 (2050)
T 3cmu_A 733 RIVEIYGPESSGKTTLTLQVIAAAQ-----REGKTCAFID 767 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCcEEEEE
Confidence 4666667899999999999999984 5678999998
No 350
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=71.35 E-value=3.9 Score=39.12 Aligned_cols=35 Identities=17% Similarity=-0.003 Sum_probs=28.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..|.|+|. .|+||||++..|.+.|. ..++.+..++
T Consensus 11 ~~I~l~G~-~GsGKST~~~~L~~~l~-----~~~~~~~~~~ 45 (212)
T 2wwf_A 11 KFIVFEGL-DRSGKSTQSKLLVEYLK-----NNNVEVKHLY 45 (212)
T ss_dssp CEEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 36889998 89999999999999983 4567775444
No 351
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=71.19 E-value=3 Score=43.06 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.++|+|. +|+||||++..|++.+
T Consensus 35 livl~G~-sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQ-PGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECC-TTSCTHHHHHHHHHHT
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 3566666 9999999999998877
No 352
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=71.13 E-value=2.6 Score=41.30 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+..|+|.|. +|+|||+++..|++.+
T Consensus 7 ~~~I~l~G~-~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGA-PGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHHHS
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 457899998 9999999999999887
No 353
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=70.99 E-value=5.3 Score=41.16 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=27.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.++++|. +|+|||+++.+|++.+ |..+..+.
T Consensus 37 ~~lLl~Gp-pGtGKT~la~aiA~~l--------~~~~i~v~ 68 (293)
T 3t15_A 37 LILGIWGG-KGQGKSFQCELVFRKM--------GINPIMMS 68 (293)
T ss_dssp SEEEEEEC-TTSCHHHHHHHHHHHH--------TCCCEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh--------CCCEEEEe
Confidence 47899998 9999999999999998 56666665
No 354
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=70.35 E-value=4 Score=38.84 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.+.|+|. +|+|||+++..|.+.|
T Consensus 3 ~~i~i~G~-~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGP-SASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 36889987 8999999999999888
No 355
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=70.28 E-value=3.4 Score=42.81 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.++|+|. +|+|||+++.+++..+. +.+.++.++.
T Consensus 37 ~~~lll~G~-~GtGKT~la~~i~~~~~-----~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGS-VGTGKTHLLQAAGNEAK-----KRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECS-SSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 346999998 89999999999999984 4477777765
No 356
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=69.80 E-value=4.6 Score=40.81 Aligned_cols=38 Identities=18% Similarity=0.052 Sum_probs=30.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (719)
.-.+++|+ -++|||+-.++++..+. .+|++|..+||..
T Consensus 20 ~l~v~~G~-MgsGKTT~lL~~~~r~~-----~~g~kvli~kp~~ 57 (234)
T 2orv_A 20 QIQVILGP-MFSGKSTELMRRVRRFQ-----IAQYKCLVIKYAK 57 (234)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCEEEEEETT
T ss_pred EEEEEECC-CCCcHHHHHHHHHHHHH-----HCCCeEEEEeecC
Confidence 34556554 59999999998888774 7899999999964
No 357
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=69.72 E-value=3.1 Score=39.19 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|. .|+||||++..|.+.+
T Consensus 7 ~I~l~G~-~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGH-PATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHc
Confidence 5888998 8999999999999988
No 358
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=69.68 E-value=2.3 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|+ |+||||+++..|++.+
T Consensus 4 ~~i~i~Gp-tgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGP-TAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHHTT
T ss_pred cEEEEECC-CcCCHHHHHHHHHHhC
Confidence 35778888 9999999999998887
No 359
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=69.48 E-value=3.3 Score=38.15 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
.+.++|+|. +|+|||+++..+++.+.
T Consensus 43 ~~~vll~G~-~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGD-PGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESC-GGGCHHHHHHHHHHHHH
T ss_pred CCceEEECC-CCCCHHHHHHHHHHHHH
Confidence 346899998 89999999999999983
No 360
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=69.26 E-value=2.9 Score=39.55 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|.|+|. .|+|||+++..|.+.+
T Consensus 13 ~~I~l~G~-~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGG-PGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46889998 9999999999999988
No 361
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=69.08 E-value=3 Score=39.09 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|. .|+||||++..|++.+
T Consensus 5 ~I~l~G~-~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGG-PGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 5788887 9999999999999988
No 362
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=68.48 E-value=3.1 Score=38.58 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHH
Q 005009 39 TFQIWSANTSLGKTLVSAGLSS 60 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~ 60 (719)
.|+|.|. +|+|||+++..|.+
T Consensus 4 ~I~i~G~-~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGC-PGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECC-TTSSHHHHHHHHHH
T ss_pred EEEEecC-CCCCHHHHHHHHHh
Confidence 4788888 99999999998887
No 363
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=67.92 E-value=3.7 Score=38.83 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|.|.|. .|+||||++..|.+.|
T Consensus 2 ~I~i~G~-~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGT-VGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH
T ss_pred EEEEECC-CccCHHHHHHHHHHhc
Confidence 4788998 8999999999999998
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=67.67 E-value=3.9 Score=39.85 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+..|+|.|. .|+||||++..|++.|
T Consensus 5 ~~~I~l~G~-~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGA-PASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 346899998 8999999999999998
No 365
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=66.97 E-value=4.3 Score=37.31 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++|+|. +|+|||+++..+++.+
T Consensus 43 ~~~~ll~G~-~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGE-PGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CCceEEECC-CCCCHHHHHHHHHHHH
Confidence 356899998 8999999999999998
No 366
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=66.49 E-value=4.3 Score=38.36 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
-+.+.|+|. +|+|||++...|++.+
T Consensus 5 g~~i~i~Gp-sGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGA-HGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHC
T ss_pred CCEEEEECC-CCCCHHHHHHHHHhhC
Confidence 346888887 8999999999998876
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=66.46 E-value=5 Score=37.57 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=25.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
.+.|+|. .|+||||++..|...+. ..|..+..+
T Consensus 7 ~i~l~G~-~GsGKST~~~~L~~~l~-----~~g~~~i~~ 39 (179)
T 2pez_A 7 TVWLTGL-SGAGKTTVSMALEEYLV-----CHGIPCYTL 39 (179)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hCCCcEEEE
Confidence 5788888 89999999999999883 446655543
No 368
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=65.63 E-value=5.5 Score=38.85 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=27.3
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|+|. +|+|||+++.-++..+. +.|.+|.|+-
T Consensus 25 ~~~i~G~-~GsGKTtl~~~~~~~~~-----~~~~~v~~~~ 58 (247)
T 2dr3_A 25 VVLLSGG-PGTGKTIFSQQFLWNGL-----KMGEPGIYVA 58 (247)
T ss_dssp EEEEEEC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEE
Confidence 4677776 89999999998887774 5688898875
No 369
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=65.58 E-value=6.2 Score=37.97 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
++.+.|+| .+|+|||++...|+..+. . ..++..+.
T Consensus 30 ~~~i~i~G-~~g~GKTTl~~~l~~~~~-----~-~~~~~~i~ 64 (221)
T 2wsm_A 30 TVAVNIMG-AIGSGKTLLIERTIERIG-----N-EVKIGAML 64 (221)
T ss_dssp CEEEEEEE-CTTSCHHHHHHHHHHHHT-----T-TSCEEEEE
T ss_pred ceEEEEEc-CCCCCHHHHHHHHHHHhc-----c-CCeEEEEe
Confidence 45788999 589999999999999872 3 36776665
No 370
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=65.31 E-value=4 Score=38.73 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHH
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSS 60 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~ 60 (719)
+..+.|+|. +|+|||+++..|.+
T Consensus 8 ~~~I~i~G~-~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGN-IGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHH
T ss_pred ceEEEEECC-CCCCHHHHHHHHHH
Confidence 446899998 99999999876643
No 371
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=65.24 E-value=3.6 Score=43.87 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.+.|+|. ||+|||+++..|++.|
T Consensus 8 ~lI~I~Gp-tgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGP-TASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred ceEEEECC-CcCcHHHHHHHHHHHc
Confidence 36888888 9999999999999998
No 372
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=64.87 E-value=5 Score=38.90 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..+.|+|. +|+||||++..|.+.+
T Consensus 6 ~~i~i~G~-~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGP-SGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46899998 9999999999998887
No 373
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=64.68 E-value=6.5 Score=38.74 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=28.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
-|.|.|. .|+||||++..|.+.|. .+|++|...+
T Consensus 8 ~i~~eG~-~gsGKsT~~~~l~~~l~-----~~~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGP-EGAGKSTNRDYLAERLR-----ERGIEVQLTR 41 (213)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCCccccc
Confidence 3566677 79999999999999994 7789887765
No 374
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=64.29 E-value=5.5 Score=38.80 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..|+|.|. .|+||||++..|++.|
T Consensus 6 ~~I~l~G~-~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGA-PGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46899998 6999999999999998
No 375
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=63.73 E-value=5.6 Score=36.94 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+..+.|+|. +|+|||+++..|+..+
T Consensus 8 g~~i~l~G~-~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGV-SGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcC-CCCCHHHHHHHHHHhh
Confidence 446889998 8999999999998877
No 376
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=63.09 E-value=5.5 Score=39.01 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
-+.+.|+|. +|+|||++...|++.+
T Consensus 19 g~~ivl~GP-SGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGA-SGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHC
T ss_pred CCEEEEECc-CCCCHHHHHHHHHhhC
Confidence 345777887 9999999999998876
No 377
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=63.00 E-value=6.8 Score=39.91 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
...++|+|. +|+|||+++.+|++.+.
T Consensus 67 ~~~vll~G~-~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGN-PGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHHHHH
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHHH
Confidence 447999997 99999999999999983
No 378
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=62.99 E-value=5.6 Score=38.62 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..|+|.|. .|+||||++..|++.+
T Consensus 5 ~~I~l~G~-~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGP-PGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHc
Confidence 46899998 7999999999999988
No 379
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=62.54 E-value=4.5 Score=40.45 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..|.|+|. +|+|||+++..|.+.|
T Consensus 23 ~iI~I~G~-~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGG-TASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46889987 9999999999999887
No 380
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=62.52 E-value=5.8 Score=38.13 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.++|+|. +|+|||+++..|++.+
T Consensus 14 ~i~l~G~-sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGP-SGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECC-TTSCHHHHHHHHHHHC
T ss_pred EEEEECC-CCCCHHHHHHHHHHhC
Confidence 4888998 8999999999998887
No 381
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=62.51 E-value=21 Score=37.16 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. +|+|||+++.++++.+
T Consensus 71 ~~vLl~Gp-pGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQ-PGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHh
Confidence 47999998 8999999999999999
No 382
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=62.07 E-value=3.5 Score=41.32 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=24.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC----CCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA----NKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~----g~~v~~~K 78 (719)
-|.|.|. .|+||||++..|.+.|. .. |++|...+
T Consensus 27 ~I~~eG~-~GsGKsT~~~~l~~~l~-----~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGI-DGAGKTTHLQWFCDRLQ-----ERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECC-C---CHHHHHHHHHHHH-----HHHGGGTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hhccccceeeeeec
Confidence 3666677 89999999999999994 55 88887665
No 383
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=61.97 E-value=8.8 Score=37.88 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++|+|. +|+|||+++.+|++.+
T Consensus 39 ~~~vll~G~-~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGP-PGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESC-TTSSHHHHHHHHHHHH
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHh
Confidence 357999998 8999999999999988
No 384
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=61.94 E-value=5.1 Score=38.84 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.+.|+|. +|+|||+++..|+..+
T Consensus 9 ~~i~l~Gp-sGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGP-SGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHST
T ss_pred cEEEEECc-CCCCHHHHHHHHHhhC
Confidence 45888888 9999999999998876
No 385
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=61.73 E-value=5.6 Score=37.22 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.++|+|. .|+||||++..|++.+
T Consensus 6 ~I~l~G~-~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGP-PGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 5888888 8999999999999888
No 386
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=61.64 E-value=7.4 Score=37.39 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
.+.|+|. +|+|||+++..|+..+. ..|.+|...
T Consensus 24 ~i~i~G~-~GsGKstl~~~l~~~~~-----~~~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGL-SRSGKTTLANQLSQTLR-----EQGISVCVF 56 (201)
T ss_dssp EEEEEEC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hcCCeEEEe
Confidence 5888887 89999999999999883 446666554
No 387
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=61.50 E-value=7.1 Score=37.37 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..+.|+|. +|+||||+...|+..+
T Consensus 26 ~~i~l~G~-sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGL-SGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHH
Confidence 35889998 8999999999999998
No 388
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=61.39 E-value=14 Score=38.51 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
...+.|.|. +|+||||+...|+..+. ..+.+|...
T Consensus 102 g~vi~lvG~-nGsGKTTll~~Lagll~-----~~~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGV-NGVGKTTTIAKLGRYYQ-----NLGKKVMFC 136 (304)
T ss_dssp SSEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred CeEEEEECC-CCCcHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 457899998 79999999999999984 446676553
No 389
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=61.24 E-value=5.8 Score=38.25 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|. .|+||||++..|++.+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGL-PGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 4788888 8999999999999888
No 390
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=61.13 E-value=6.7 Score=41.93 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=28.9
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|+| ..|+|||++++.|+..+. ++|.+|.|+-
T Consensus 64 ~ii~I~G-~pGsGKTtLal~la~~~~-----~~g~~vlyid 98 (356)
T 1u94_A 64 RIVEIYG-PESSGKTTLTLQVIAAAQ-----REGKTCAFID 98 (356)
T ss_dssp SEEEEEC-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEEEEC-CCCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 3467776 699999999999998884 6688999886
No 391
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=60.94 E-value=9.8 Score=40.98 Aligned_cols=75 Identities=7% Similarity=-0.104 Sum_probs=40.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc--------CCCCCChHHHHHHHHHHhccCCCCCCeEEE-eCCh
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--------FPENVYEPALECAELLLQGVGKGWASRAYF-SDNG 470 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~--------~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f-~~SG 470 (719)
.|||-.+. .-- +|+|.+|+.+.+..+.... ...-..+...+.-++|+++++.+.-+.|+| +.+|
T Consensus 28 ~yl~~agp------t~~-p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 28 VFNFSSGP------AML-PAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CEECCSSS------CCC-CHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred CccccCCC------CCC-CHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 67774431 223 8999999988775421100 000112334455566666665321246888 6899
Q ss_pred HHHHHHHHHHH
Q 005009 471 STAIEIALKMA 481 (719)
Q Consensus 471 sEA~E~AlKlA 481 (719)
+||++.|++-.
T Consensus 101 T~a~n~ai~~l 111 (386)
T 3qm2_A 101 RGQFAGVPLNL 111 (386)
T ss_dssp THHHHHHHHHH
T ss_pred hHHHHHHHHhc
Confidence 99999999865
No 392
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=60.76 E-value=5.8 Score=38.42 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..+.|||- .|+||||++..|.+.+
T Consensus 13 ~iIgltG~-~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGK-IGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 35888886 9999999999998877
No 393
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=60.75 E-value=5.8 Score=37.42 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
.++|+|. +|+|||+++..+++.+.
T Consensus 40 ~~ll~G~-~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGP-PGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECS-TTSSHHHHHHHHHHHHH
T ss_pred eEEEECC-CCCCHHHHHHHHHHHHh
Confidence 4899998 89999999999999883
No 394
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=60.73 E-value=11 Score=40.28 Aligned_cols=64 Identities=8% Similarity=-0.021 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhhhhcccccCC----CCC----ChHHHHHHHHHHhccCCCCCCeEEE-eCChHHHHHHHHHHH
Q 005009 418 QIELARDMGYTAARFGHVMFP----ENV----YEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMA 481 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~----~~~----~~~~~~Lae~L~~~~~~~~~~rv~f-~~SGsEA~E~AlKlA 481 (719)
+|+|.+|+.+.+..+...... +.. .+...+.-++|+++++.+.-..|+| +.+|+||++.|++-.
T Consensus 17 ~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~ 89 (361)
T 3m5u_A 17 PLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNL 89 (361)
T ss_dssp CHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhc
Confidence 899999999887643211100 111 2344555667777776421246877 999999999999866
No 395
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=60.60 E-value=6.8 Score=39.17 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|+|. +|+|||+++.+|++.+ . +.+..+.++.
T Consensus 30 ~~vll~G~-~GtGKt~la~~i~~~~----~-~~~~~~~~v~ 64 (265)
T 2bjv_A 30 KPVLIIGE-RGTGKELIASRLHYLS----S-RWQGPFISLN 64 (265)
T ss_dssp SCEEEECC-TTSCHHHHHHHHHHTS----T-TTTSCEEEEE
T ss_pred CCEEEECC-CCCcHHHHHHHHHHhc----C-ccCCCeEEEe
Confidence 35899997 8999999999999887 2 4455555543
No 396
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=60.22 E-value=5.2 Score=43.71 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|+|+|+ ||+|||+++..|++.+
T Consensus 3 ~~i~i~Gp-tgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGT-TGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEEC-SSSSHHHHHHHHHHHH
T ss_pred cEEEEECc-chhhHHHHHHHHHHHC
Confidence 35788887 9999999999999998
No 397
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=60.20 E-value=8.2 Score=38.81 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. +|+|||+++.+|++.+
T Consensus 52 ~~~ll~G~-~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGP-PGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESS-SSSSHHHHHHHHHHHT
T ss_pred CeEEEECC-CCCcHHHHHHHHHHHh
Confidence 46999998 8999999999998887
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=60.18 E-value=6.4 Score=37.82 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|+|. +|+|||+++..|+..+. ..|.+|.++-
T Consensus 25 ~~~i~G~-~GsGKTtl~~~l~~~~~-----~~~~~v~~~~ 58 (235)
T 2w0m_A 25 FIALTGE-PGTGKTIFSLHFIAKGL-----RDGDPCIYVT 58 (235)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HHTCCEEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 5777777 89999999999997773 4566887764
No 399
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=60.06 E-value=5 Score=38.44 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHH
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSS 60 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~ 60 (719)
|..+.|+|. .|+||||++..|..
T Consensus 2 ~~~i~l~G~-~GsGKST~~~~La~ 24 (206)
T 1jjv_A 2 TYIVGLTGG-IGSGKTTIANLFTD 24 (206)
T ss_dssp CEEEEEECS-TTSCHHHHHHHHHT
T ss_pred CcEEEEECC-CCCCHHHHHHHHHH
Confidence 346889998 89999999977755
No 400
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=59.48 E-value=7.5 Score=39.06 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. +|+|||+++.+|++.+
T Consensus 65 ~~vLl~G~-~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 65 VSVLLEGP-PHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCcHHHHHHHHHHHh
Confidence 47999998 8999999999999987
No 401
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=59.29 E-value=6.7 Score=35.64 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCcee
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFV 75 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~ 75 (719)
.++|+|. +|+|||+++.+|.+.. . +.+..+.
T Consensus 26 ~vll~G~-~GtGKt~lA~~i~~~~----~-~~~~~~v 56 (145)
T 3n70_A 26 AVWLYGA-PGTGRMTGARYLHQFG----R-NAQGEFV 56 (145)
T ss_dssp CEEEESS-TTSSHHHHHHHHHHSS----T-TTTSCCE
T ss_pred CEEEECC-CCCCHHHHHHHHHHhC----C-ccCCCEE
Confidence 4899998 8999999999998876 2 4455544
No 402
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=59.22 E-value=4.2 Score=41.02 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=25.6
Q ss_pred CCchhHHHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeE
Q 005009 8 HYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVY 76 (719)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~ 76 (719)
|+|.|||--.-..+..--+....|. .+.++++|||.++|+|+ ++++.|. ++|.+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~m~--l~~k~vlITGas~gIG~-----~la~~l~-----~~G~~V~~ 58 (271)
T 4iin_A 2 HHHHHHSSGVDLGTENLYFQSNAMQ--FTGKNVLITGASKGIGA-----EIAKTLA-----SMGLKVWI 58 (271)
T ss_dssp ----------------------CCC--CSCCEEEETTCSSHHHH-----HHHHHHH-----HTTCEEEE
T ss_pred CcccccccccccCcceehhhhhhcc--cCCCEEEEECCCcHHHH-----HHHHHHH-----HCCCEEEE
Confidence 6677777665555554444455555 45568999999999997 4556663 66888764
No 403
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=59.19 E-value=2 Score=42.58 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. ||+|||+++..|++.+
T Consensus 35 ~~ilI~Gp-sGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGD-SGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECC-CTTTTHHHHHHHHTTT
T ss_pred EEEEEECC-CCCCHHHHHHHHHHhC
Confidence 46889997 9999999998887654
No 404
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=59.19 E-value=5.9 Score=37.57 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..|.|+|. .|+||||++..|.+.|
T Consensus 5 ~~I~l~G~-~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGL-DKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHTS
T ss_pred cEEEEEcC-CCCCHHHHHHHHHHHH
Confidence 35889998 8999999999998876
No 405
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=58.85 E-value=3.9 Score=42.31 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
...|-|+| .+|+||||++..|.+.|
T Consensus 5 ~~iIgItG-~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTG-SSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEES-CC---CCTHHHHHHHHH
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 34688998 59999999999999988
No 406
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=58.65 E-value=5.9 Score=38.25 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|. .|+||||++..|++.+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGL-PGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHS
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 4788988 8999999999998887
No 407
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=58.52 E-value=9.3 Score=38.37 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=27.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCc-eeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKK-FVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~-v~~~K 78 (719)
-|.|.|. .|+|||+++..|.+.|. .+|++ +...+
T Consensus 29 ~i~~eG~-~GsGKsT~~~~l~~~l~-----~~~~~~~~~~r 63 (236)
T 3lv8_A 29 FIVIEGL-EGAGKSTAIQVVVETLQ-----QNGIDHITRTR 63 (236)
T ss_dssp EEEEEES-TTSCHHHHHHHHHHHHH-----HTTCCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCCeeeeec
Confidence 4777787 78999999999999994 67888 65555
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=58.35 E-value=8.6 Score=37.15 Aligned_cols=23 Identities=13% Similarity=0.149 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|. .|+||||++..|.+.+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGA-PVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 4789998 7999999999999988
No 409
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=57.95 E-value=14 Score=42.08 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
+.++|+|. .|+|||++...|++.+. +.|.+|...-|
T Consensus 205 ~~~~I~G~-pGTGKTt~i~~l~~~l~-----~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGG-PGTGKSTTTKAVADLAE-----SLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEES
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEecC
Confidence 56777775 89999999999999994 67889988776
No 410
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=57.90 E-value=11 Score=36.52 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
-|.|+|. +|+|||++...|++.+
T Consensus 3 pIVi~GP-SG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGP-SGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECC-TTSSHHHHHHHHHHHC
T ss_pred EEEEECC-CCCCHHHHHHHHHHhC
Confidence 4788888 8999999999998876
No 411
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=57.67 E-value=10 Score=39.61 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=27.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC-CCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~-g~~v~~~K 78 (719)
+.++|+|. +|+|||++...+++.+. .. +..+.++.
T Consensus 45 ~~~li~G~-~G~GKTtl~~~l~~~~~-----~~~~~~~~~i~ 80 (389)
T 1fnn_A 45 PRATLLGR-PGTGKTVTLRKLWELYK-----DKTTARFVYIN 80 (389)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHHT-----TSCCCEEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHh-----hhcCeeEEEEe
Confidence 47899998 89999999999999983 33 45555544
No 412
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=57.42 E-value=9.7 Score=37.48 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|+|. .|+|||+++..|...|
T Consensus 18 ~i~i~G~-~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGP-ASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECS-SCSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHc
Confidence 6899997 8999999999998887
No 413
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.23 E-value=6.6 Score=39.35 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..++|+|. +|+|||+++..|.+.+
T Consensus 33 ~~i~l~G~-~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQ-SGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESC-GGGTTHHHHHHHHHHT
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 35788887 9999999999999887
No 414
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=57.08 E-value=7.7 Score=38.97 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..+.|+|. +|+|||+++..|.+.|
T Consensus 10 ~~i~i~G~-~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGP-AGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46888888 8999999999999988
No 415
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=57.00 E-value=5.9 Score=42.89 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=31.9
Q ss_pred CCcEEEeccccCccccCccccccccCCCccee--eehhccC-CCccchheeEe-CHHHHhhhc
Q 005009 654 KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 654 gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lg-gG~~Plsavl~-~~~i~~~~~ 712 (719)
++..|.||.+- . .......+.-..||+ +|+|.+| .| +-+|.+++ ++++++.+.
T Consensus 219 ~~~~i~d~~~~--~---~~~s~~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~l~~~l~ 275 (427)
T 2hox_A 219 GCKSIYDMVYY--W---PHYTPIKYKADEDILLFTMSKFTGHSG-SRFGWALIKDESVYNNLL 275 (427)
T ss_dssp TCEEEEECTTC--S---TTTSCCCSCBCCSEEEEEHHHHTSCGG-GCCEEEEECCHHHHHHHH
T ss_pred CCCEEEeeccc--C---CCCCccccCCCceEEEEeChhcCCCCC-ceEEEEEECCHHHHHHHH
Confidence 56688888773 2 111111111123555 7899997 57 67888999 488877653
No 416
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=56.91 E-value=20 Score=39.03 Aligned_cols=23 Identities=13% Similarity=0.032 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|+|. ||+||||+-.+|+..+
T Consensus 169 ii~I~Gp-nGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGP-TGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHH
T ss_pred eEEEECC-CCCCHHHHHHHHHhhc
Confidence 4788888 9999999999999988
No 417
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=56.68 E-value=6.3 Score=36.69 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.1
Q ss_pred eEEEEcCCCCCcHHHHHHHHHH
Q 005009 39 TFQIWSANTSLGKTLVSAGLSS 60 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~ 60 (719)
.+.|.|. +|||||++...|+.
T Consensus 23 ki~vvG~-~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGA-GGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECS-TTSSHHHHHHHHHH
T ss_pred EEEEECc-CCCCHHHHHHHHHc
Confidence 5888887 99999998776653
No 418
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=56.62 E-value=11 Score=38.01 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. +|+|||+++..|++.+
T Consensus 51 ~~vll~G~-~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGP-TGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECC-TTSSHHHHHHHHHHHH
T ss_pred ceEEEECC-CCCCHHHHHHHHHHHh
Confidence 46899998 8999999999999998
No 419
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=56.11 E-value=73 Score=40.97 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=27.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.+.+-.+|+|||++++.++..+. ++|.+|.||-
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa-----~~g~~VlyiS 767 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQ-----REGKTCAFID 767 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred eEEEECCCCCCcHHHHHHHHHHHH-----HcCCCeEEEe
Confidence 455555699999999999999984 6688999986
No 420
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=55.96 E-value=11 Score=39.79 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
...++++|. +|+|||+++..|++.+
T Consensus 72 ~~~ill~Gp-~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGP-TGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHT
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHh
Confidence 346899998 8999999999999988
No 421
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=55.66 E-value=9.6 Score=36.92 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=26.9
Q ss_pred EEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 41 ~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.|=|. -|+||||.+..|.+.|. ++|++|...+
T Consensus 4 ~~EG~-DGsGKsTq~~~L~~~L~-----~~g~~v~~tr 35 (197)
T 3hjn_A 4 TFEGI-DGSGKSTQIQLLAQYLE-----KRGKKVILKR 35 (197)
T ss_dssp EEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 34476 58999999999999994 7899998777
No 422
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=55.36 E-value=17 Score=36.86 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=26.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++++|. +|+|||+++..|++.+. ..+..+.++.
T Consensus 49 ~~ll~G~-~GtGKt~la~~la~~~~-----~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGP-TGVGKTELAKTLAATLF-----DTEEAMIRID 82 (311)
T ss_dssp EEEEESC-SSSSHHHHHHHHHHHHH-----SCGGGEEEEE
T ss_pred EEEEECC-CCcCHHHHHHHHHHHHc-----CCCcceEEee
Confidence 6899997 89999999999999984 4444555543
No 423
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=55.15 E-value=8.2 Score=38.45 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|. .|+||||++..|++.+
T Consensus 31 ~I~l~G~-~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGA-PGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 5888988 8999999999999888
No 424
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=55.14 E-value=5.3 Score=40.49 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 28 PQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 28 ~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
|..|...++.++++|||.++|+|+ ++++.|. ++|.+|...
T Consensus 19 p~~m~~~l~~k~~lVTGas~GIG~-----aia~~la-----~~G~~V~~~ 58 (270)
T 3ftp_A 19 PGSMDKTLDKQVAIVTGASRGIGR-----AIALELA-----RRGAMVIGT 58 (270)
T ss_dssp ----CCTTTTCEEEETTCSSHHHH-----HHHHHHH-----HTTCEEEEE
T ss_pred CcccccCCCCCEEEEECCCCHHHH-----HHHHHHH-----HCCCEEEEE
Confidence 555666667789999999999997 4556664 668887643
No 425
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=55.06 E-value=9.4 Score=39.05 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=21.6
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 34 ~~~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+..+..|.|+|. .|+||||++..|. .+
T Consensus 72 ~~~~~iI~I~G~-~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 72 PSGLYVLGLTGI-SGSGKSSVAQRLK-NL 98 (281)
T ss_dssp CTTCEEEEEEEC-TTSCHHHHHHHHH-HH
T ss_pred CCCCEEEEEECC-CCCCHHHHHHHHH-HC
Confidence 334557899998 9999999998887 45
No 426
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=55.02 E-value=11 Score=38.92 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=34.1
Q ss_pred CCCeEEEEc-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~g-t~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+|+-+|||| .=++.||-++++.|.+.|+ .+|++|...|
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk-----~~G~~Vt~~K 60 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILK-----SCGLHVTSIK 60 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHH-----HCCCcceeee
Confidence 467889986 7799999999999999994 8899999999
No 427
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=54.79 E-value=12 Score=36.81 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCC-ceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANK-KFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~-~v~~~K 78 (719)
-|.|.|. .|+||||++..|.+.|. .+|+ .|...+
T Consensus 5 ~i~~eG~-~gsGKsT~~~~l~~~l~-----~~~~~~v~~~r 39 (213)
T 4tmk_A 5 YIVIEGL-EGAGKTTARNVVVETLE-----QLGIRDMVFTR 39 (213)
T ss_dssp EEEEEEC-TTSCHHHHHHHHHHHHH-----HTTCCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCcceeee
Confidence 4666787 79999999999999994 6787 665554
No 428
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=54.69 E-value=12 Score=37.07 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. +|+|||+++.+|+..+
T Consensus 46 ~~vll~G~-~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGP-PGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CeEEEECc-CCCCHHHHHHHHHHHc
Confidence 46999998 8999999999999987
No 429
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=54.21 E-value=9 Score=42.62 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|-||||+ |||+++.-|...|. +.|++|+.|-
T Consensus 63 ~~~vI~VtGTN---GKtST~~~l~~iL~-----~~G~~vG~~t 97 (487)
T 2vos_A 63 SYPSIHIAGTN---GKTSVARMVDALVT-----ALHRRTGRTT 97 (487)
T ss_dssp SSCEEEEECSS---SHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred cCeEEEEeCCC---CcHHHHHHHHHHHH-----HcCCCeEEEC
Confidence 35689999995 99999999999994 7899997664
No 430
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=53.86 E-value=15 Score=35.82 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=25.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|.|=|. -|+||||.+..|.+.| .+|++|...+
T Consensus 5 I~~EG~-dGsGKsTq~~~L~~~L------~~~~~v~~~~ 36 (205)
T 4hlc_A 5 ITFEGP-EGSGKTTVINEVYHRL------VKDYDVIMTR 36 (205)
T ss_dssp EEEECC-TTSCHHHHHHHHHHHH------TTTSCEEEEE
T ss_pred EEEECC-CCCcHHHHHHHHHHHH------HCCCCEEEee
Confidence 344477 5999999999999999 4588887766
No 431
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=53.46 E-value=8.1 Score=34.56 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHH
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLS 59 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~ 59 (719)
|+.+.|.|. +|+|||++...|+
T Consensus 1 ~~ki~v~G~-~~~GKSsli~~l~ 22 (161)
T 2dyk_A 1 MHKVVIVGR-PNVGKSSLFNRLL 22 (161)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHh
Confidence 467899995 8999998876554
No 432
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=53.43 E-value=11 Score=38.22 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++|+|. +|+|||+++..|++.+
T Consensus 48 g~~i~l~G~-~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGM-MGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhc
Confidence 347999998 8999999999999988
No 433
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=53.35 E-value=7.7 Score=37.83 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=25.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+.+-.+|+|||++++-++.... . +.|.+|.|+=
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~---~-~~~~~v~~~s 66 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGA---E-EYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH---H-HHCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH---H-hcCCCceeec
Confidence 4566666799999999998775421 1 5577888874
No 434
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=53.29 E-value=25 Score=36.32 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++++|. +|+|||+++.++++.+
T Consensus 51 ~~~vLl~Gp-pGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGP-PGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECS-SSSCHHHHHHHHHHHH
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHH
Confidence 457999998 8999999999999987
No 435
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=53.22 E-value=11 Score=38.47 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=33.5
Q ss_pred CCCeEEEEc-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~g-t~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+|+-+|||| .=++.||-.+++.|-+.|+ .+|++|...|
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk-----~rG~~Vt~~K 60 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILK-----SCGLHVTSIK 60 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHH-----TTTCCEECCE
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHH-----HCCCeeEEEe
Confidence 467899987 4599999999999999994 8999999888
No 436
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=52.99 E-value=13 Score=35.66 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.+.|+|- +|||||++...|+..+
T Consensus 39 ~~i~ivG~-~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGA-IGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred eEEEEEcC-CCCCHHHHHHHHHHHh
Confidence 46888887 9999999999999987
No 437
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=52.89 E-value=18 Score=37.62 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=30.3
Q ss_pred CCCCCCC-CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 30 PLDLPLS-HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 30 ~~~~~~~-~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
++.+... ...+.|.|. +|+||||+...|+..+. ..+.+|...
T Consensus 92 ~l~~~~~~g~vi~lvG~-nGsGKTTll~~Lag~l~-----~~~g~V~l~ 134 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGV-NGGGKTTSLGKLAHRLK-----NEGTKVLMA 134 (302)
T ss_dssp SCCCCSSSCEEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred ccccccCCCcEEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCeEEEE
Confidence 4444332 346889997 99999999999999984 446666543
No 438
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.81 E-value=26 Score=38.98 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.++|+|. +|+|||+++.+|++.+ |..+..+.
T Consensus 77 ~~~lLL~Gp-pGtGKTtla~~la~~l--------~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGP-PGIGKTTAAHLVAQEL--------GYDILEQN 109 (516)
T ss_dssp CSEEEEECS-TTSSHHHHHHHHHHHT--------TCEEEEEC
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHc--------CCCEEEEe
Confidence 468999998 9999999999999987 56666654
No 439
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=52.58 E-value=8.9 Score=35.96 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..+.|.|. +|+||||+...|+..+
T Consensus 10 ~~i~l~G~-~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGH-PGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEEC-TTSCHHHHHHHHHTCS
T ss_pred eEEEEECC-CCCCHHHHHHHHHhcc
Confidence 35888998 8999999988876653
No 440
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=52.08 E-value=15 Score=38.75 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++++|. +|+|||+++.+|++.+
T Consensus 51 ~~~vll~Gp-pGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGP-TGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHT
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHc
Confidence 346899998 8999999999999988
No 441
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=51.94 E-value=96 Score=39.87 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=36.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHH
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFL 93 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~ 93 (719)
-+.+-|.|+ .++|||++++-++...+ ++|..++|+-+ .+.-|+.+.
T Consensus 1431 g~~iei~g~-~~sGkttl~~~~~a~~~-----~~g~~~~~i~~-----e~~~~~~~~ 1476 (1706)
T 3cmw_A 1431 GRIVEIYGP-ESSGKTTLTLQVIAAAQ-----REGKTCAFIDA-----EHALDPIYA 1476 (1706)
T ss_dssp TSEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEECT-----TSCCCHHHH
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEec-----CCCCCHHHH
Confidence 367999999 99999999999997774 77999999984 344566653
No 442
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=51.68 E-value=11 Score=37.26 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+..+.|.|. .|+||||++..|++.+
T Consensus 27 ~~~i~l~G~-~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGP-PGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHh
Confidence 347999998 8999999999999988
No 443
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=51.56 E-value=10 Score=35.99 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
+.++|+|. +|+|||+++..+++.+.
T Consensus 46 ~~~ll~G~-~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGT-RGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECS-TTSCHHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHhc
Confidence 36899998 89999999999999883
No 444
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=51.08 E-value=13 Score=37.82 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.|. +|+|||++...|+..+. . ..|.+|.++-
T Consensus 37 ~~~i~G~-~G~GKTTl~~~ia~~~~---~-~~G~~v~~~~ 71 (296)
T 1cr0_A 37 VIMVTSG-SGMGKSTFVRQQALQWG---T-AMGKKVGLAM 71 (296)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH---H-TSCCCEEEEE
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHH---H-HcCCeEEEEe
Confidence 4566665 89999999999998884 2 4477888874
No 445
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=51.07 E-value=9.6 Score=41.74 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.++|+|. +|+|||+++.+++..+... ..+.++.++.
T Consensus 130 ~~~lll~Gp-~G~GKTtLa~aia~~l~~~---~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGG-VGLGKTHLLQSIGNYVVQN---EPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECS-SSSSHHHHHHHHHHHHHHH---CCSSCEEEEE
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHHHh---CCCCeEEEee
Confidence 346999998 8999999999999988410 1266777654
No 446
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=51.04 E-value=14 Score=39.37 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
-+.++|.|+ ||+|||++...|+..+. ..|.++..+-|
T Consensus 35 ~~~~~i~G~-~G~GKs~~~~~~~~~~~-----~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAK-PGAGKSFTAKMLLLREY-----MQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEES
T ss_pred cCceEEEcC-CCCCHHHHHHHHHHHHH-----HCCCEEEEEeC
Confidence 446889998 89999999999988774 66888888875
No 447
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=50.78 E-value=18 Score=35.19 Aligned_cols=26 Identities=19% Similarity=0.090 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+|...+|+|. .|+|||+++..++..+
T Consensus 4 ~~mi~l~tG~-pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 4 MAEICLITGT-PGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCCEEEEECC-TTSSHHHHHHHHHHHC
T ss_pred ceeEEEEEeC-CCCCHHHHHHHHHHHH
Confidence 3446789998 8999999998875554
No 448
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=50.72 E-value=14 Score=38.19 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. +|+|||+++..|++.+
T Consensus 56 ~~vll~G~-~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGP-AGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECS-TTSSHHHHHHHHHHHT
T ss_pred CeEEEECc-CCCCHHHHHHHHHHHh
Confidence 36899998 9999999999998887
No 449
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.34 E-value=22 Score=41.52 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=28.5
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++++|. +|+|||+++.+|++.+. ..+..+..+.
T Consensus 523 ~~Ll~Gp-~GtGKT~lA~ala~~l~-----~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGP-TGVGKTELARALAESIF-----GDEESMIRID 556 (758)
T ss_dssp EEEEESC-TTSSHHHHHHHHHHHHH-----SCTTCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhc-----CCCcceEEEe
Confidence 6999998 89999999999999983 5566776665
No 450
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=49.82 E-value=11 Score=38.94 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
.+.|+|. +|+||||++..|.+.|.
T Consensus 33 ii~I~G~-sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGP-QGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhh
Confidence 4778876 99999999999999993
No 451
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=49.75 E-value=13 Score=39.39 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=28.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.|. .|+|||++++-++..+. +.|.+|.|+-
T Consensus 62 ~iv~I~G~-pGsGKTtLal~la~~~~-----~~g~~vlyi~ 96 (349)
T 2zr9_A 62 RVIEIYGP-ESSGKTTVALHAVANAQ-----AAGGIAAFID 96 (349)
T ss_dssp SEEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 34677776 89999999999998874 5688898876
No 452
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=49.56 E-value=13 Score=37.11 Aligned_cols=37 Identities=22% Similarity=0.036 Sum_probs=27.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (719)
..+|+|+ -++|||+..+.++..+. .+|.+|..|||..
T Consensus 30 I~vitG~-M~sGKTT~Llr~~~r~~-----~~g~kvli~kp~~ 66 (219)
T 3e2i_A 30 IECITGS-MFSGKSEELIRRLRRGI-----YAKQKVVVFKPAI 66 (219)
T ss_dssp EEEEEEC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC-
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HcCCceEEEEecc
Confidence 3567766 79999996666666653 6799999999843
No 453
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=49.55 E-value=11 Score=36.96 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|. .|+||||++..|.+.+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGP-NGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 4788888 8999999999999988
No 454
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=49.55 E-value=3.6 Score=41.89 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=25.3
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 34 ~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
.+..++++|||.++|+|+ ++++.|. ++|.+|...
T Consensus 30 ~l~gk~~lVTGas~GIG~-----aia~~la-----~~G~~V~~~ 63 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGA-----AIAEGLA-----GAGAHVILH 63 (275)
T ss_dssp CCTTCEEEETTCSSHHHH-----HHHHHHH-----HTTCEEEEE
T ss_pred CCCCCEEEEECCCCHHHH-----HHHHHHH-----HCCCEEEEE
Confidence 345679999999999997 4556664 668887653
No 455
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=49.38 E-value=26 Score=37.48 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=30.3
Q ss_pred CCCCCCC-CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 30 PLDLPLS-HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 30 ~~~~~~~-~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
++.+... -..+.|.|. +|+||||+...|+..+. ..+.+|...
T Consensus 149 ~l~l~~~~g~vi~lvG~-nGsGKTTll~~Lag~l~-----~~~G~V~l~ 191 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGV-NGGGKTTSLGKLAHRLK-----NEGTKVLMA 191 (359)
T ss_dssp SCCCCSSSSEEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CcceecCCCeEEEEEcC-CCChHHHHHHHHHhhcc-----ccCCEEEEe
Confidence 4444333 346889997 89999999999999984 446666543
No 456
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=49.34 E-value=13 Score=37.09 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
...+.|+|. +|+||||++..|++.|
T Consensus 27 g~~I~I~G~-~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGP-SGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECC-TTSSHHHHHHHHHHHT
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHhc
Confidence 357999997 8999999999999888
No 457
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=49.32 E-value=14 Score=41.60 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+++|. +|+|||||+..|.+.|
T Consensus 397 ~I~l~Gl-sGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 397 SIVLGNS-LTVSREQLSIALLSTF 419 (511)
T ss_dssp EEEECTT-CCSCHHHHHHHHHHHH
T ss_pred EEEeccc-CCCCHHHHHHHHHHHH
Confidence 6899998 6999999999999999
No 458
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=49.26 E-value=14 Score=40.51 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
++++|+|. +|+|||+++..|++.+
T Consensus 51 ~~vLL~Gp-pGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGP-PGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred cEEEEECC-CCCcHHHHHHHHHHHh
Confidence 57999998 9999999999999998
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=49.26 E-value=9.7 Score=38.74 Aligned_cols=23 Identities=9% Similarity=0.019 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|. +|+||||++..|.+.+
T Consensus 4 ~I~l~G~-~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGC-PGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHS
T ss_pred EEEEECC-CCCCHHHHHHHHHHhC
Confidence 5788888 9999999999988764
No 460
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=48.93 E-value=11 Score=35.57 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..+.|+|. +|+||||+...|+..+
T Consensus 8 ~ii~l~Gp-~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAP-SGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred cEEEEECc-CCCCHHHHHHHHHhhC
Confidence 35788888 8999999999988775
No 461
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=48.83 E-value=9.2 Score=36.23 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|+|. +|+||||++..|+..+
T Consensus 8 ~i~l~G~-~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGP-SGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHCT
T ss_pred EEEEECC-CCCCHHHHHHHHHHhh
Confidence 5888998 8999999999888766
No 462
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=48.77 E-value=20 Score=35.44 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=25.5
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
-+.|.|. .|+||||++..|.+.| . . |.++...
T Consensus 28 ~i~i~G~-~GsGKsT~~~~l~~~l----~-~-~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGP-EGSGKTTVINEVYHRL----V-K-DYDVIMT 59 (229)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH----T-T-TSCEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHH----h-c-CCCceee
Confidence 4777887 7999999999999999 3 5 6666543
No 463
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=48.48 E-value=10 Score=35.76 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|+|. +|+||||+...|+..+
T Consensus 3 ii~l~Gp-sGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGP-SGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESS-SSSSHHHHHHHHHHHC
T ss_pred EEEEECC-CCCCHHHHHHHHHhhC
Confidence 4678887 8999999999998876
No 464
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=48.42 E-value=12 Score=36.08 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|+|. +|+||||++..|.. +
T Consensus 6 ~I~i~G~-~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 6 IVALTGG-IGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEEECC-TTSCHHHHHHHHHH-T
T ss_pred EEEEECC-CCCCHHHHHHHHHH-c
Confidence 5788887 89999999988866 5
No 465
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=48.05 E-value=11 Score=36.21 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=25.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
.++|.|. +|+|||+++..|.+.|. . ..|.++.++
T Consensus 27 ~i~~~G~-~GsGKsT~~~~l~~~l~---~-~~g~~~~~~ 60 (211)
T 1m7g_A 27 TIWLTGL-SASGKSTLAVELEHQLV---R-DRRVHAYRL 60 (211)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH---H-HHCCCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhc---c-ccCCcEEEE
Confidence 5788888 89999999999999882 1 245555554
No 466
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.01 E-value=19 Score=37.22 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=27.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC---CCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA---NKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~---g~~v~~~K 78 (719)
+.++|+|. +|+|||++...+++.+. .. +..+.++.
T Consensus 46 ~~vli~G~-~G~GKTtl~~~l~~~~~-----~~~~~~~~~~~i~ 83 (386)
T 2qby_A 46 NNIFIYGL-TGTGKTAVVKFVLSKLH-----KKFLGKFKHVYIN 83 (386)
T ss_dssp CCEEEEEC-TTSSHHHHHHHHHHHHH-----HHTCSSCEEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HHhcCCceEEEEE
Confidence 36899998 89999999999999883 22 55666655
No 467
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=47.89 E-value=14 Score=42.59 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=27.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
.|+|+|. +|+||||++..|.+.|. ++|..+..+
T Consensus 54 lIvLtGl-sGSGKSTlAr~La~~L~-----~~G~~~v~l 86 (630)
T 1x6v_B 54 TVWLTGL-SGAGKTTVSMALEEYLV-----CHGIPCYTL 86 (630)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHH-----hcCCeEEEe
Confidence 5899998 89999999999999983 567776665
No 468
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=47.85 E-value=15 Score=38.85 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++|+|. +|+|||+++.+|++.+
T Consensus 117 ~~~vLl~Gp-pGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGP-PGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESS-TTSSHHHHHHHHHHHT
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHc
Confidence 457999998 9999999999998887
No 469
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=47.85 E-value=12 Score=39.19 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
+.++|+|. +|+|||+++..+++.+.
T Consensus 46 ~~vll~G~-~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 46 FSNLFLGL-TGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHHH
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHHH
Confidence 47999998 99999999999999883
No 470
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=47.72 E-value=10 Score=39.89 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
+.++|+|. +|+|||+++..+++.+.
T Consensus 46 ~~lli~Gp-PGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 46 KLFYITNA-DDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CEEEEECC-CSHHHHHHHHHHHHHHH
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH
Confidence 47999999 99999999999999995
No 471
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=47.68 E-value=15 Score=39.84 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|-|||| -|||+++.-|...|. +.|++++.+.
T Consensus 49 ~~vI~VTGT---nGKtTT~~~l~~iL~-----~~G~~~g~~~ 82 (422)
T 1w78_A 49 PFVFTVAGT---NGKGTTCRTLESILM-----AAGYKVGVYS 82 (422)
T ss_dssp SEEEEEECS---SCHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred CcEEEEeCC---cChHHHHHHHHHHHH-----HCCCCEEEEC
Confidence 568999999 599999999999994 7799998776
No 472
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=47.51 E-value=11 Score=38.03 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++|+|. +|+|||+++.+|++.+
T Consensus 54 ~~~vll~Gp-~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGP-PGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESS-SSSCHHHHHHHHHHHT
T ss_pred CCeEEEECc-CCCCHHHHHHHHHHHh
Confidence 457999998 8999999999998887
No 473
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=47.38 E-value=12 Score=36.98 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|.|. +|+|||++..+|+..+
T Consensus 50 ~g~ll~G~-~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGP-PGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECC-TTSSHHHHHHHHHHHT
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHh
Confidence 35899998 8999999999999887
No 474
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=46.90 E-value=23 Score=36.68 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. +|+|||+++..+++.+
T Consensus 45 ~~vll~G~-~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 45 SNALLYGL-TGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCEEECBC-TTSSHHHHHHHHHHHH
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHH
Confidence 46899998 8999999999999988
No 475
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=46.69 E-value=16 Score=37.41 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. +|+|||+++.+|+..+
T Consensus 50 ~~vLL~Gp-~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGP-PGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECS-SSSSHHHHHHHHHHHT
T ss_pred ceEEEECC-CCcCHHHHHHHHHHHh
Confidence 46899998 9999999999999887
No 476
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=46.63 E-value=15 Score=35.25 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|+|. .|+|||+++..|.+.+
T Consensus 5 ~i~i~G~-~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGP-AAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECC-TTSSHHHHHHHHHHHT
T ss_pred EEEEECC-CCCCHHHHHHHHHHhc
Confidence 5888887 8999999999998877
No 477
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=46.61 E-value=15 Score=38.37 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++|+|. +|+|||+++.++++.+
T Consensus 45 ~~~iLL~Gp-pGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGP-PGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESS-SSSCHHHHHHHHHHHT
T ss_pred CceEEEECC-CCccHHHHHHHHHHHc
Confidence 358999998 9999999999999887
No 478
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=46.45 E-value=15 Score=37.86 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=26.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++|+|- +|+|||+++.+|.+.. . +.+..+.++.
T Consensus 27 ~vLi~Ge-~GtGKt~lAr~i~~~~----~-~~~~~~v~v~ 60 (304)
T 1ojl_A 27 TVLIHGD-SGTGKELVARALHACS----A-RSDRPLVTLN 60 (304)
T ss_dssp CEEEESC-TTSCHHHHHHHHHHHS----S-CSSSCCCEEE
T ss_pred cEEEECC-CCchHHHHHHHHHHhC----c-ccCCCeEEEe
Confidence 5899997 8999999999999887 2 4455554443
No 479
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=46.42 E-value=17 Score=35.95 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=25.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
+.++|.+ .||+|||.++..++..+ +.++.++=|
T Consensus 109 ~~~ll~~-~tG~GKT~~a~~~~~~~--------~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVL-PTGSGKTHVAMAAINEL--------STPTLIVVP 141 (237)
T ss_dssp SEEEEEE-SSSTTHHHHHHHHHHHS--------CSCEEEEES
T ss_pred CCEEEEe-CCCCCHHHHHHHHHHHc--------CCCEEEEeC
Confidence 4566666 69999999998887665 467777776
No 480
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=46.02 E-value=13 Score=40.75 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=28.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+.+-.+|+|||++++-|+..+. . +.|.+|.||=
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~---~-~~g~~Vl~~s 239 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVA---T-KTNENVAIFS 239 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH---H-HSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---H-hCCCcEEEEE
Confidence 4666667799999999999999874 1 3578898885
No 481
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=45.61 E-value=14 Score=35.43 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.+.|+|. +|+||||+...|++.+
T Consensus 5 ~~i~lvGp-sGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGP-SGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CEEEEECC-CCCCHHHHHHHHHhhC
Confidence 35889998 8999999999998876
No 482
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=45.56 E-value=14 Score=35.28 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+-|+|. +|+||||++..|+..+
T Consensus 8 ~i~i~G~-~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGG-TASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 5789997 7999999999999887
No 483
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=45.09 E-value=18 Score=38.61 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++|+|. +|+|||+++.+|++.+
T Consensus 148 ~~~vLL~Gp-pGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGP-PGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESS-TTSCHHHHHHHHHHHT
T ss_pred CceEEEECC-CCCCHHHHHHHHHHhh
Confidence 458999998 9999999999998876
No 484
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=44.95 E-value=22 Score=38.75 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|-|||| -|||+++.-|...|. +.|++|+.|.
T Consensus 51 ~~~vI~VtGT---NGKgSt~~~l~~iL~-----~~G~~vg~~t 85 (437)
T 3nrs_A 51 APKIFTVAGT---NGKGTTCCTLEAILL-----AAGLRVGVYS 85 (437)
T ss_dssp SSEEEEEECS---SSHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred cCCEEEEECC---cChHHHHHHHHHHHH-----HCCCcEEEEC
Confidence 4568999999 499999999999994 7799999886
No 485
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=44.85 E-value=32 Score=37.54 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++++|. +|+|||+++.+|++.+
T Consensus 64 ~~iLl~Gp-pGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGP-PGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CeEEEECC-CcCCHHHHHHHHHHHh
Confidence 47999998 9999999999999998
No 486
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=44.84 E-value=20 Score=32.52 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=19.5
Q ss_pred CCCCCCeEEEEcCCCCCcHHHHHHHHH
Q 005009 33 LPLSHPTFQIWSANTSLGKTLVSAGLS 59 (719)
Q Consensus 33 ~~~~~~~~~I~gt~t~vGKT~vs~~L~ 59 (719)
+......+.|.|. ++||||++...|+
T Consensus 4 ~~~~~~~i~v~G~-~~~GKssl~~~l~ 29 (178)
T 2lkc_A 4 MVERPPVVTIMGH-VDHGKTTLLDAIR 29 (178)
T ss_dssp TCCCCCEEEEESC-TTTTHHHHHHHHH
T ss_pred cCCCCCEEEEECC-CCCCHHHHHHHHh
Confidence 3445667999996 8999998775553
No 487
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=44.71 E-value=14 Score=37.83 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.++|+|. +|+|||+++..+++.+
T Consensus 39 ~~vll~G~-~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGP-PGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECC-TTCCCHHHHHHHHHHH
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHh
Confidence 35899998 8999999999999988
No 488
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=43.96 E-value=18 Score=38.14 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.++|+|. +|+|||+++.+|++.+
T Consensus 84 ~~~iLL~Gp-pGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGP-PGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CceEEEECC-CCCcHHHHHHHHHHHh
Confidence 346999997 9999999999999998
No 489
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=43.87 E-value=15 Score=35.89 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|.|. +|+||||+...|+..+
T Consensus 25 ~~~lvGp-sGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGP-SGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECS-TTSSHHHHHHHHHHHS
T ss_pred EEEEECC-CCCCHHHHHHHHHhhC
Confidence 5788887 8999999999888865
No 490
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=43.76 E-value=14 Score=35.29 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=17.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHH
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSS 60 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~ 60 (719)
-.+.|.|. ++||||++...|+.
T Consensus 27 ~ki~lvG~-~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGN-AGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHH
T ss_pred eEEEEECc-CCCCHHHHHHHHHh
Confidence 36888986 99999998766554
No 491
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=43.66 E-value=14 Score=35.65 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
.+.|+|. +|+||||++..|+..+.
T Consensus 24 ~v~I~G~-sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGA-PGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECC-TTSCTHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh
Confidence 5788887 89999999999999983
No 492
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=43.64 E-value=9.5 Score=38.02 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.++|+|. +|+|||+++.+|++.+
T Consensus 46 ~vll~G~-~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 46 GVLLVGP-PGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCBCS-SCSSHHHHHHHHHHHH
T ss_pred eEEEECC-CCCcHHHHHHHHHHHh
Confidence 4788987 8999999999999987
No 493
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=43.58 E-value=19 Score=39.09 Aligned_cols=35 Identities=6% Similarity=0.033 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|-|||| -|||+++.-|...|. +.|++|+.+.
T Consensus 38 ~~~vI~VtGT---nGKtTT~~~l~~iL~-----~~G~~vg~~~ 72 (428)
T 1jbw_A 38 QGRYIHVTGT---NGKGSAANAIAHVLE-----ASGLTVGLYT 72 (428)
T ss_dssp SSCEEEEECS---SCHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred cCcEEEEECC---CChHHHHHHHHHHHH-----HCCCCEEEEe
Confidence 3568999999 599999999999994 7799998775
No 494
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=43.24 E-value=27 Score=41.50 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=27.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++|+|. +|+|||+++..|.+.+. +.+..+.++.
T Consensus 590 ~vLl~Gp-~GtGKT~lA~~la~~~~-----~~~~~~i~i~ 623 (854)
T 1qvr_A 590 SFLFLGP-TGVGKTELAKTLAATLF-----DTEEAMIRID 623 (854)
T ss_dssp EEEEBSC-SSSSHHHHHHHHHHHHH-----SSGGGEEEEC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhc-----CCCCcEEEEe
Confidence 7899998 99999999999999983 4455665554
No 495
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=43.13 E-value=14 Score=36.64 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..++|.|. .|+|||+++.+|++.+
T Consensus 59 n~ili~GP-PGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGP-ANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESC-GGGCHHHHHHHHHHHH
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46899998 9999999999999998
No 496
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=42.77 E-value=21 Score=34.45 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|.|+|. .|+|||+|+..|.+.|
T Consensus 7 ~iI~i~g~-~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGRE-FGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHT
T ss_pred eEEEEeCC-CCCCHHHHHHHHHHHh
Confidence 46888887 9999999999999998
No 497
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=42.69 E-value=11 Score=37.63 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=24.4
Q ss_pred HHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 19 RLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
.+...++..+++|.. +..++++|||.++|+|+. |++.|. ++|.+|...
T Consensus 12 ~~~~~~~~~~~~m~~-l~~k~vlITGas~gIG~~-----la~~l~-----~~G~~V~~~ 59 (262)
T 3rkr_A 12 HSSGHIDDDDKHMSS-LSGQVAVVTGASRGIGAA-----IARKLG-----SLGARVVLT 59 (262)
T ss_dssp -------------CT-TTTCEEEESSTTSHHHHH-----HHHHHH-----HTTCEEEEE
T ss_pred cccCCCCCCcchhhc-cCCCEEEEECCCChHHHH-----HHHHHH-----HCCCEEEEE
Confidence 334445555555542 334789999999999975 455663 668887653
No 498
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=42.38 E-value=23 Score=36.83 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC------CCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA------NKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~------g~~v~~~K 78 (719)
..+.|+|. +|+|||+++.-|+.... .. |.+|.|+-
T Consensus 108 ~i~~i~G~-~GsGKT~la~~la~~~~-----~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 108 TMTEFFGE-FGSGKTQLCHQLSVNVQ-----LPPEKGGLSGKAVYID 148 (324)
T ss_dssp SEEEEEES-TTSSHHHHHHHHHHHTT-----SCGGGTCCSCEEEEEE
T ss_pred cEEEEECC-CCCCHhHHHHHHHHHHh-----cccccCCCCCeEEEEE
Confidence 34666666 99999999999998863 22 67888875
No 499
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=42.36 E-value=12 Score=38.84 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
+++.+.|+|. .|+||||+-..|+.. ..|+|++..+|
T Consensus 3 ~i~v~~i~G~-~GaGKTTll~~l~~~-------~~~~~~aVi~~ 38 (318)
T 1nij_A 3 PIAVTLLTGF-LGAGKTTLLRHILNE-------QHGYKIAVIEN 38 (318)
T ss_dssp CEEEEEEEES-SSSSCHHHHHHHHHS-------CCCCCEEEECS
T ss_pred cccEEEEEec-CCCCHHHHHHHHHhh-------cCCCcEEEEEe
Confidence 4668899997 899999998777664 34889999997
No 500
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=42.30 E-value=24 Score=32.86 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=15.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHH
Q 005009 39 TFQIWSANTSLGKTLVSAGLS 59 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~ 59 (719)
.+.|.|. ++||||++...|+
T Consensus 23 ki~v~G~-~~~GKSsli~~l~ 42 (191)
T 2a5j_A 23 KYIIIGD-TGVGKSCLLLQFT 42 (191)
T ss_dssp EEEEESS-TTSSHHHHHHHHH
T ss_pred EEEEECc-CCCCHHHHHHHHh
Confidence 5889995 8999999875554
Done!