RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 005009
(719 letters)
>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate
transaminase.
Length = 817
Score = 1061 bits (2745), Expect = 0.0
Identities = 420/708 (59%), Positives = 496/708 (70%), Gaps = 32/708 (4%)
Query: 14 RRILLRLFHHSTFHPQPL---DLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA 70
+L L LPLS P F +W ANT++GKTLVSAGL+++ +S
Sbjct: 1 LHMLRSLIGLRRRSSSSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAA-----AASR 55
Query: 71 NKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSS 130
+Y+KP+QTG+P DSD+RF+F K SLS R SL SN LF S AAKS L
Sbjct: 56 RSPVLYVKPVQTGFPDDSDARFVFRKADSLSRRS---ESLFASNRTLFLSPPAAKSALG- 111
Query: 131 RDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG 190
+N E ++ S L C TLFAW AVSPHLAA RE G
Sbjct: 112 ------GVSSMGAHAAVNAGAEAGVTS------SALWCHTLFAWRRAVSPHLAARRE-GR 158
Query: 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFR 250
V D +V+E + + LR+ +E G +L +VETAGGVASPGPSG+LQCDLYRP R
Sbjct: 159 GVSDDEVLEAVNRSLRE----VGANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLR 214
Query: 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVL 310
LP ILVGDGRLGGIS T++AYESL LRGYDVVAVV EDHGL NE L+SYL NRVPV VL
Sbjct: 215 LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVL 274
Query: 311 PPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKL 370
PP+P+D +DL EWFD+S + FD+L + + +S R+QRL MPK AGE+ WWPFTQH L
Sbjct: 275 PPVPEDPGDDLDEWFDDSKSTFDALLDALQSWHSGRLQRLQSMPKEAGEVLWWPFTQHAL 334
Query: 371 VPEEAVTVIDSRCGENFSVYQDQKN--KFIGQQFDACASWWTQGPDATLQIELARDMGYT 428
VP ++VTVIDSRCGE+FSVY+ + N I QQFDACASWWTQGPD TLQ ELAR + Y
Sbjct: 335 VPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYA 394
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A R+GHVMFPENV+EPAL AELLL G GKGWASR +FSDNGSTAIE+ALKMAFRKF D
Sbjct: 395 AGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVD 454
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
H L + + IELKVLAL GSYHGDTLGAMEAQAPS +TGFLQQPWYSGRGLFL
Sbjct: 455 HGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFL 514
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
DPPTV M N +W +SLPE S + ++ T+ SRDE+F + RDS+ LA Y SYI Q L
Sbjct: 515 DPPTVGMRNGRWNISLPEGFSSGLEG-EETTWESRDEVFDKTRDSTPLAKAYRSYIEQQL 573
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
+ +G I ALIIEPV+H AGGM ++DPLFQR LV+ C++RKIPVIFDEVFTG WR
Sbjct: 574 DEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWR 633
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716
LGVE+ +LLGC PDIACY KLLTGG++PLAATLAT VF++F G SK
Sbjct: 634 LGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSK 681
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 192 bits (490), Expect = 2e-54
Identities = 100/366 (27%), Positives = 152/366 (41%), Gaps = 82/366 (22%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT--QG---PDAT 416
W P+TQ K I+ E +Y + ++I D +SWW G P
Sbjct: 2 WHPYTQMKD--ALPPLPIER--AEGVYLYDEDGREYI----DGISSWWVNIHGHNHP--- 50
Query: 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
E+ + + HVMF +EPA+E AE L++ +G + +FSD+GS A+E+
Sbjct: 51 ---EINAAIKEQLDKLEHVMFGGLTHEPAIELAERLVEITPEGLE-KVFFSDSGSVAVEV 106
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS----PY 532
ALKMA + + + K + LA + YHGDT GAM +
Sbjct: 107 ALKMALQYW----------QNQGRPGK---TRFLAFRNGYHGDTFGAMSVGDVGGFHALF 153
Query: 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592
L VF + C + + +
Sbjct: 154 EPLL-------------FEVVF------------------IPAPPCYRCWDPD----DCE 178
Query: 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652
+ LA++ + LL+ + I A I+EP+V AGGM P + R L + C
Sbjct: 179 AECLAAL------EALLEEHADE----IAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDE 228
Query: 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
+ +I DE+ TGF R G + G PDI C K LTGG +PLAATL T+ ++++F
Sbjct: 229 YGVLLIADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFY 288
Query: 713 GDSKKR 718
D + +
Sbjct: 289 SDDEGK 294
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 186 bits (476), Expect = 2e-52
Identities = 102/372 (27%), Positives = 145/372 (38%), Gaps = 101/372 (27%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIEL 421
W P+TQ KL I E +Y + I DA +SWW AT
Sbjct: 13 WHPYTQMKL--HPPPIPIVR--AEGAYLYLADGRELI----DAISSWWV----ATH---- 56
Query: 422 ARDMGY-----------TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
G+ R HV+F +EPA A+ L+ G +FSD+G
Sbjct: 57 ----GHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGL-DHVFFSDSG 111
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----EA 526
S A+E+ALKMA + + + + + L+L+G YHGDT+G M
Sbjct: 112 SVAVEVALKMALQYW----------RNRGEPGRS---RFLSLRGGYHGDTIGTMSVGDRG 158
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
+ YT L + + P D
Sbjct: 159 GMHALYTPLLFEQ------VTAPFP-------------------------------PDG- 180
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
YE+ L ++ + +G I A I+EP+V AGGM DP + L
Sbjct: 181 -YEQATLDALEALLEKH-------------AGEIAAFIVEPLVQGAGGMLFYDPRYLAEL 226
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C + +IFDE+ TGF R G + G PDI C K LTGG +PLAATL T
Sbjct: 227 RRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAE 286
Query: 707 VFDSFVGDSKKR 718
+F++F D + +
Sbjct: 287 IFEAFYSDDRAK 298
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 165 bits (420), Expect = 2e-44
Identities = 94/365 (25%), Positives = 146/365 (40%), Gaps = 73/365 (20%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL--- 417
W PFTQ + P VI E + +++ D + W
Sbjct: 13 LWHPFTQMRD-PLAEPRVIVR--AEGVYLTDIDGRRYL----DGMSGLWC----VNHGHG 61
Query: 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
+ E+A + + HVMF +EPA+E AE L + +G +F+D+GS A+E A
Sbjct: 62 RPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETA 121
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-----EAQAPSPY 532
LKMA + + + ++ K ++ + YHGDTLGAM A + Y
Sbjct: 122 LKMALQYW----------RARGQPQRK---KFISRRNGYHGDTLGAMSVGGPVALRHAFY 168
Query: 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592
L L L P + E+
Sbjct: 169 DPLLP------EVLHLPAPYAYRRGFFG-EGDEEFA----------------------EA 199
Query: 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652
+ +L ++ I ++ + I A I+EPVV AGGM + P + + + + C
Sbjct: 200 ADELEAL----ILEHGPET--------IAAFIVEPVVGGAGGMLVPPPGYLKRVREICDK 247
Query: 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
I +I DEV TGF R G + G VPDI C K LTGG +PL+A L ++ ++++F
Sbjct: 248 YGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFS 307
Query: 713 GDSKK 717
Sbjct: 308 DGDAG 312
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 127 bits (322), Expect = 1e-31
Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 81/322 (25%)
Query: 395 NKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
N+++ D + P E+ + A+ H EPA+E A
Sbjct: 36 NRYL----DFLSGIGVLNLGHNHP------EVVEALKEQLAKLTHFSLGFFYNEPAVELA 85
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL +G + +F ++G+ A+E ALK+A R ++ G+ K+
Sbjct: 86 ELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYT----------GRK--------KI 125
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
++ +G+YHG TLGA+ Y RG F LP L+
Sbjct: 126 ISFEGAYHGRTLGALSLTGSKKY-----------RGGFGPL-------------LPGVLH 161
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
+ + R + DL ++ + L+ +V A+I+EP+
Sbjct: 162 --------VPYPYRY--RPPAELADDLEAL------EEALEEHPEEV----AAVIVEPIQ 201
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
GG+ + P + + L + C+ I +I DEV TGF R G + G PDI GK
Sbjct: 202 -GEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGK 260
Query: 690 LLTGGVIPLAATLATNAVFDSF 711
L GG+ PL A L + D+F
Sbjct: 261 GLGGGL-PLGAVLGREEIMDAF 281
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 128 bits (324), Expect = 1e-31
Identities = 106/371 (28%), Positives = 165/371 (44%), Gaps = 67/371 (18%)
Query: 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--- 411
+R + W P TQ + P V +R GE + +++ DA +SWWT
Sbjct: 25 QRDLAVLWHPCTQMREHPHTLPLVPIAR-GEGAWLVGHDGRRYL----DAVSSWWTNLFG 79
Query: 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL----QGVGKGWASRAYFS 467
+ + +A A VM +EPA++ AE LL + G+ S+ +++
Sbjct: 80 HAEPRIGAAIAAQ----AGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYA 135
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
DNGS +E+ALKMAF F E + T + +AL+ YHG+T+GA+
Sbjct: 136 DNGSAGVEVALKMAFHYFHNRGE------HRRT-------RFIALENGYHGETIGALAVG 182
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
D P +Y + L E L++ S D
Sbjct: 183 ---------------------DIP---LYRRVYAPLLLESLFAP----------SPDAYL 208
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647
E S++ ++ ++ Q L + + G I ALI+EP + AGGM M P + R
Sbjct: 209 AEPGQSAEDYALQAADALQALFE----QSPGEICALILEPRLQCAGGMRMHHPAYLRRAR 264
Query: 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ C +I DE+ TGF R G + G +PD+ C K LTGG +PL+A LAT +
Sbjct: 265 ELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQL 324
Query: 708 FDSFVGDSKKR 718
+D+F+ DS++R
Sbjct: 325 YDAFLDDSRER 335
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 123 bits (312), Expect = 6e-31
Identities = 82/333 (24%), Positives = 122/333 (36%), Gaps = 75/333 (22%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWT--QG---PDATLQIELARDMGYTAARFGHVMFP 438
+ +Y +++ D + G P ++ + + A + H F
Sbjct: 5 AKGVWLYDVDGRRYL----DFLSGIAVVNLGHCHP------KIVQAVKEQADKLTHTSFR 54
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
EPAL+ AE L Q G R +F ++GS A E A+K+A +
Sbjct: 55 AFTTEPALQLAEKLAQLTPGG-LDRVFFMNSGSEANETAIKLARQYAKKKGA-------- 105
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
T K K++A G +HG TLGA+ S Y G G L
Sbjct: 106 --TGKT---KIIAFSGGFHGRTLGALSVTGSSGY--------KKGFGPSLP--------- 143
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
+ LP E +LA + + +
Sbjct: 144 -GVYFLP--------------------YPDLEAAEEELACADEALRLIKAVHDDN----- 177
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I A+I+EP+ GG+ P F L + C+ + +I DEV TGF R G +
Sbjct: 178 -IAAVIVEPI-QGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHY 235
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G PDI K LTGG +PL+A LAT + +F
Sbjct: 236 GVTPDIMTLAKALTGG-LPLSAVLATAEIMQAF 267
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 121 bits (304), Expect = 5e-29
Identities = 102/358 (28%), Positives = 153/358 (42%), Gaps = 69/358 (19%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--GPDATLQI 419
W P TQ K E + +I R GE + + +++ DA +SWW G A +I
Sbjct: 16 WHPCTQMK--DHEQLPLIPIRRGEGVWLEDFEGKRYL----DAVSSWWVNVFG-HANPRI 68
Query: 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479
+ + HV+ +EP +E +E L++ G SR +++DNGS+AIE+ALK
Sbjct: 69 NQR--IKDQVDQLEHVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALK 125
Query: 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539
M+F + + K + + L SYHG+TL AM + +T
Sbjct: 126 MSFHYW----------RNRGKPRK---KRFVTLTNSYHGETLAAMSVGDVALFTE----- 167
Query: 540 WYSGRGLFLDPPTVFMYNSKWILSLPE---WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596
+ + L LD V S PE W EH F ++ E D
Sbjct: 168 --TYKPLLLDTIKV---PSPDCYLRPEGMSW-----EEHSRRMFAHMEQTLAEHHDE--- 214
Query: 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656
I A+I+EP++ AGGM M P++ ++L + C +
Sbjct: 215 -----------------------IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVH 251
Query: 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714
+I DE+ GF R G + G PD C K LTGG +PLAA L T+ V+ +F D
Sbjct: 252 LIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDD 309
>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 422
Score = 117 bits (294), Expect = 4e-28
Identities = 90/320 (28%), Positives = 122/320 (38%), Gaps = 84/320 (26%)
Query: 403 DACASWWTQG---------PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453
DA +SWW+ A QI+ HVMF +EPA++ LL
Sbjct: 44 DAMSSWWSAAHGHGHPRLKAAAHKQID----------TMSHVMFGGLTHEPAIKLTRKLL 93
Query: 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513
G ++SD+GS ++E+A+KMA ++S G+ E+ ++L +
Sbjct: 94 NLTDNGL-DHVFYSDSGSVSVEVAIKMAL-QYS---------KGQGHPERT---RLLTWR 139
Query: 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR---GLFLDPPTVFMYNSKWILSLPEWLYS 570
YHGDT AM P G + W G +F P P
Sbjct: 140 SGYHGDTFAAMSVCDPE---GGMHSLW-KGTLPEQIFAPAP-------------PVR--- 179
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
S EI S L S+ I + + A+IIEP+V
Sbjct: 180 ---------GSSPQEI------SEYLRSL-ELLIDET------------VAAIIIEPIVQ 211
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGM D + C I +I DE+ TGF R G G PDI C GK
Sbjct: 212 GAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKA 271
Query: 691 LTGGVIPLAATLATNAVFDS 710
LTGG + AATL T+ V
Sbjct: 272 LTGGFMSFAATLCTDKVAQL 291
>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 429
Score = 115 bits (290), Expect = 2e-27
Identities = 101/327 (30%), Positives = 144/327 (44%), Gaps = 89/327 (27%)
Query: 399 GQQF-DACASWWTQGPDATLQIELARDMGYTAARF-----------GHVMFPENVYEPAL 446
G++ D +SWW A L GY R H+MF +EPA+
Sbjct: 43 GRRLIDGMSSWW-----AALH-------GYNHPRLNAAATNQLAKMSHIMFGGFTHEPAV 90
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
E A+ LL+ + ++ +F+D+GS A+E+A+KMA + + K ++
Sbjct: 91 ELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMALQ---YQQ-------AKGEVQRT-- 137
Query: 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
K ++ YHGDT AM P TG GLF SLP
Sbjct: 138 -KFATIRSGYHGDTWHAM--SVCDPVTGM--------HGLFNH-------------SLP- 172
Query: 567 WLYSKIVEHKDITFCSRDEI-FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625
V++ F + I F EE + + + Q+LL+ G + I ALI+
Sbjct: 173 ------VQY----FLPQPSIKFGEEWNDEAIEPL------QDLLEQKGDE----IAALIL 212
Query: 626 EPVVHAAGGMHMVDPLFQRILVKE---CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP 682
EPVV AGGM+ P + LVK C + +IFDE+ TGF R G + G VP
Sbjct: 213 EPVVQGAGGMYFYSPTY---LVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVP 269
Query: 683 DIACYGKLLTGGVIPLAATLATNAVFD 709
DI C GK LTGG + L+AT+ T A+
Sbjct: 270 DIMCIGKALTGGYLTLSATITTEAIAQ 296
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 114 bits (287), Expect = 5e-27
Identities = 92/324 (28%), Positives = 132/324 (40%), Gaps = 91/324 (28%)
Query: 403 DACASWWTQGPDATLQ----IELARDMGYTAARFGHVMFPENVYEPALE-CAELL----- 452
D +SWW A + +L M HVMF + PA+E C +L+
Sbjct: 47 DGMSSWW-----AAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQ 101
Query: 453 -LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511
L+ V + +D+GS A+E+A+KMA + + E + L
Sbjct: 102 PLECV--------FLADSGSVAVEVAMKMALQYWQAKGEP--------------RQRFLT 139
Query: 512 LKGSYHGDTLGAMEAQAP-----SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
L+ YHGDT GAM P S Y G+L + LF P
Sbjct: 140 LRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPE------NLFAPAPQ-------------- 179
Query: 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626
SR F E D D+A ++ ++ + I A+I+E
Sbjct: 180 ---------------SR---FDGEWDERDIAP-FARLMAAH---------RHEIAAVILE 211
Query: 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC 686
P+V AGGM + P + + + K C I +I DE+ TGF R G + G PDI C
Sbjct: 212 PIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILC 271
Query: 687 YGKLLTGGVIPLAATLATNAVFDS 710
GK LTGG + L+ATL T V ++
Sbjct: 272 LGKALTGGTMTLSATLTTREVAET 295
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 112 bits (281), Expect = 4e-26
Identities = 98/388 (25%), Positives = 159/388 (40%), Gaps = 80/388 (20%)
Query: 334 SLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQ 393
S + Y E ++ W PFTQ K EE +I+ GE +Y
Sbjct: 4 STTDKPSYTYEELSEK-------NKAYVWHPFTQMKDYLEEDPLIIER--GEGRKLYDVN 54
Query: 394 KNKFIGQQFDACASWWT-----QGP--DATLQIELARDMGYTAARFGHVMFPENVYEPAL 446
N++ +D +S W Q P D ++ +L + T +V P++
Sbjct: 55 GNEY----YDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANV--------PSI 102
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
AE L++ V +G + ++SD+G+TA+EIA+KMAF+ + GK ++ +
Sbjct: 103 LLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMAFQYWQ--------NKGKPKKQRFV- 152
Query: 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
LK +YHGDT+GA+ A LF + ++ + + P
Sbjct: 153 ----TLKNAYHGDTIGAVSVGAID---------------LFHQVYSSLLFEA-IKMPYPY 192
Query: 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626
S K + E + LL+ +++ I +E
Sbjct: 193 TYRSPYGNDKAEI---VKKHLEELEE---------------LLKEKHEEIAAII----VE 230
Query: 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC 686
P+V AGGM + + + L C + I DEV TGF R G + PDI
Sbjct: 231 PLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT 290
Query: 687 YGKLLTGGVIPLAATLATNAVFDSFVGD 714
GK LTGG +P+A T+ T+ ++++F GD
Sbjct: 291 AGKGLTGGYLPIAITVTTDEIYNAFYGD 318
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 93.8 bits (234), Expect = 3e-20
Identities = 69/290 (23%), Positives = 102/290 (35%), Gaps = 65/290 (22%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A+ H + YEP +E AE L + +F ++G+ A+E A+K+A R ++
Sbjct: 85 LAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR 143
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
V+A G++HG TLGA+ P P+ +G G
Sbjct: 144 P------------------GVIAFDGAFHGRTLGALSLTGSKP-------PYKAGFGPLP 178
Query: 549 DPPTVFMY-NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607
Y N + D +F E ++A
Sbjct: 179 PGVYHVPYPNPY----RCPFGIGGEECGDDALEYIERALFDLEVGPEEVA---------- 224
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
A+IIEP+ G + + L K C+ I +I DEV TGF
Sbjct: 225 --------------AIIIEPIQGEGGIIVPPKGFLKA-LRKLCREHGILLIADEVQTGFG 269
Query: 668 RLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713
R G E G PDI K L GG +PL+A + + D G
Sbjct: 270 RTGKMFAFEHF----GVEPDIVTLAKSLGGG-LPLSAVVGRAEIMDWPPG 314
>gnl|CDD|222178 pfam13500, AAA_26, AAA domain. This domain is found in a number of
proteins involved in cofactor biosynthesis such as
dethiobiotin synthase and cobyric acid synthase. This
domain contains a P-loop motif.
Length = 197
Score = 81.1 bits (201), Expect = 2e-17
Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 155 ISGEEDSSVSELVCKTL-----------FAWEEAVSPHLAAERESGGVVGD-SKVIETLG 202
SG D SELV + L + +SPHLAA E GV D K+++ L
Sbjct: 38 QSGLVDDGDSELVKRLLGLDQTREHPEPYRLSAPLSPHLAARLE--GVTIDLEKIVKKLP 95
Query: 203 KCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG 262
K + L +VE AGG+ P L D+ LP ILV G LG
Sbjct: 96 KDA---------------DPL-VVEGAGGLMVPLNENLLNIDIAANLGLPVILVARGGLG 139
Query: 263 GISGTISAYESLKLRGYDVVAVVF-EDHGLVNEVPLMSYLRNRVPVL-VLPPLPQ 315
I+ T+ E+L+ RG +++ V+ N + ++ + VPVL V+P LP
Sbjct: 140 TINHTLLTIEALRSRGINILGVILNGVPNPANVEAIEAF--SGVPVLGVIPYLPD 192
Score = 51.1 bits (123), Expect = 3e-07
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLP 98
T + +T +GKT+VS GL + K Y KPIQ+G D DS + +L
Sbjct: 2 TIFVTGTDTGVGKTVVSLGLVRAL------KRGVKVGYWKPIQSGLVDDGDSELV-KRLL 54
Query: 99 SLSLRRNFPSSLILS 113
L R P LS
Sbjct: 55 GLDQTREHPEPYRLS 69
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 82.6 bits (205), Expect = 9e-17
Identities = 76/291 (26%), Positives = 113/291 (38%), Gaps = 95/291 (32%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + HV N++ EP E AE L++ +A R +F ++G+ A E ALK+A RK++
Sbjct: 71 AEKLWHV---SNLFYNEPQAELAEKLVELSP--FADRVFFCNSGAEANEAALKLA-RKYT 124
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
D E + K++A + S+HG TLGA+ A TG QP Y
Sbjct: 125 GDPE---------------KSKIIAFENSFHGRTLGALSA------TG---QPKYRKGFG 160
Query: 547 FLDPPTVFM-YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605
L P + +N D+ ++ + I
Sbjct: 161 PLLPGFRHVPFN-------------------------------------DIEAL-EAAID 182
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
++ A+I+EP+ GG+ P F + L + C +I DEV TG
Sbjct: 183 ED------------TAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTG 229
Query: 666 FWRLGVETTADLLGC-----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
R T L PDI K L GG P+ A LAT + +F
Sbjct: 230 LGR-----TGKLFAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEIASAF 274
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 82.0 bits (203), Expect = 2e-16
Identities = 75/285 (26%), Positives = 116/285 (40%), Gaps = 62/285 (21%)
Query: 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496
F + A+E + L+ R +FS GS ++E ALK+A R++ +V
Sbjct: 80 FDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQY---WKVR---- 131
Query: 497 GK-DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY-TGFLQQPWYSGRGLFLDPPTVF 554
G+ + T K ++LK YHG G + + + +P G T +
Sbjct: 132 GQPERT------KFISLKQGYHGTHFGGASVNGNTVFRRNY--EPLLPG---CFHVETPW 180
Query: 555 MYNSKWILSLPEWLYSKIVEHKDITFCSR---DEIFYEERDSSDLASIYSSYISQNLLQN 611
+Y + + PE ++ C+R EI ++ D+
Sbjct: 181 LYRNPFTEQDPE----ELARI-----CARLLEREIAFQGPDT------------------ 213
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLG 670
I A I EPV AGG+ +V P LV+E C I +I DEV TGF R G
Sbjct: 214 --------IAAFIAEPV-QGAGGV-IVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG 263
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+ G PDI C K +T G +PL AT+ + D+F ++
Sbjct: 264 SWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANA 308
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 78.2 bits (194), Expect = 2e-15
Identities = 71/278 (25%), Positives = 106/278 (38%), Gaps = 80/278 (28%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N+Y EP E AE L V + +F ++G+ A E A+K+A RK+ H+
Sbjct: 76 NLYYIEPQEELAEKL---VELSGMDKVFFCNSGAEANEAAIKLA-RKYG--HKKG----- 124
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557
+ +++ + S+HG TL + A TG QP Y + F F+Y
Sbjct: 125 ------IEKPEIITAENSFHGRTLATLSA------TG---QPKY--QEGFEPLVEGFIY- 166
Query: 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
V DI ++ + ++
Sbjct: 167 ---------------VPFNDI------------------EALKA-------------AIT 180
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
A+++EP+ GG++ D + + L + C I +I DEV TG R G
Sbjct: 181 DKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQH 239
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GD 714
G PDI K L GGV P+ A LA V D F GD
Sbjct: 240 YGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGD 276
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 73.9 bits (182), Expect = 5e-14
Identities = 80/290 (27%), Positives = 114/290 (39%), Gaps = 85/290 (29%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
+ HV N+Y EP E AE L V A R +F ++G+ A E ALK+A RK++
Sbjct: 56 LEKLVHV---SNLYYTEPQEELAEKL---VEHSGADRVFFCNSGAEANEAALKLA-RKYT 108
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
G EK K++A + S+HG T+GA+ A Y Q+ +
Sbjct: 109 ----------GDKGKEKK---KIIAFENSFHGRTMGALSATGQPKY----QKGFEP---- 147
Query: 547 FLDPPTVFM-YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605
L P + YN E L I +
Sbjct: 148 -LVPGFSYAPYND------IESLKKAIDDE------------------------------ 170
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
A+I+EP+ GG++ F + L + C+++ +IFDEV TG
Sbjct: 171 --------------TAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTG 215
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
R G + G PDI K L GGV P+ ATLA V ++F GD
Sbjct: 216 IGRTGKFFAYEHYGIEPDIITLAKGLGGGV-PIGATLAKEEVAEAFTPGD 264
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase;
Provisional.
Length = 445
Score = 73.0 bits (180), Expect = 2e-13
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 620 IGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I+EP+ +AG + V P QR L + C I +IFDEV TGF RLG A+
Sbjct: 219 IAAVIVEPMAGSAGVL--VPPKGYLQR-LREICDKHGILLIFDEVITGFGRLGAAFAAER 275
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
G PDI + K LT G IP+ A +A++ ++D+F+
Sbjct: 276 FGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFM 310
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase;
Provisional.
Length = 442
Score = 71.7 bits (176), Expect = 4e-13
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EPV + G + QR L + C I +IFDEV TGF RLG A G
Sbjct: 216 IAAVIVEPVAGSTGVLIPPKGYLQR-LREICDKHGILLIFDEVITGFGRLGAPFAAQYFG 274
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713
PD+ K LT G IP+ A ++ + D+F+
Sbjct: 275 VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQ 308
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 69.0 bits (169), Expect = 3e-12
Identities = 73/268 (27%), Positives = 109/268 (40%), Gaps = 57/268 (21%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EPA + A+ L G + ++F ++GS A E A+K+A + F +
Sbjct: 74 EPAEKLAKKLSDLSP-GDLNWSFFVNSGSEANETAMKIAIQHFQ----------ERGIQG 122
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562
K K+L+ SYHG T+GA+ +G + L D PT+
Sbjct: 123 KH---KILSRWMSYHGITMGALS------MSGHPLRR-QRFVSLLEDYPTI--------- 163
Query: 563 SLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622
S P +C R + + LA + ++ G + I A
Sbjct: 164 SAP--------------YCYRCP-VQKVYPTCQLACATEL---ETAIERIG---AEHIAA 202
Query: 623 LIIEPVVHAAGGMHMVDP--LFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I EP++ AAG +V P ++ I KE C + I I DEV TG R G + G
Sbjct: 203 FIAEPIIGAAGAA-VVPPKGYYKVI--KEICDHYDILFIADEVMTGLGRTGAMFAMEHWG 259
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAV 707
PDI GK L G P+AAT+ ++ V
Sbjct: 260 VEPDIMTLGKGLGAGYTPIAATVVSDRV 287
>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 453
Score = 68.3 bits (167), Expect = 5e-12
Identities = 38/102 (37%), Positives = 54/102 (52%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+G I ALI+EP+V A GM M DP + R L C + +I DE+ G R G +
Sbjct: 219 AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACE 278
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKKR 718
G PD C K ++GG +PL+ L+ +A+F +F D R
Sbjct: 279 QAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTR 320
Score = 58.2 bits (141), Expect = 7e-09
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 35/170 (20%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ-----GPD-- 414
W P TQ K E + ++ GE +Y ++ DA +SWW P
Sbjct: 23 WHPCTQMK--HHERLPLLPVARGEGAWLYDRDGRRY----LDAISSWWVNLFGHANPRIN 76
Query: 415 ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474
A L+ +L D H M +EPA+E AE L G G A+F+ +G++A+
Sbjct: 77 AALKDQL--DT------LEHAMLAGCTHEPAIELAERLAALTG-GTLGHAFFASDGASAV 127
Query: 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
EIALKM+F + + + + + L YHG+T+GA+
Sbjct: 128 EIALKMSFHAWR-------------NRGRGDKREFVCLANGYHGETIGAL 164
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 68.0 bits (167), Expect = 6e-12
Identities = 69/283 (24%), Positives = 118/283 (41%), Gaps = 70/283 (24%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A +F H + YEPA+E AE L++ G+ + +F+++G+ + E A+K+A ++
Sbjct: 83 AEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIA--RYHTG 140
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ ++ FLG ++HG T G++ A P +Q+ +G F
Sbjct: 141 RKYIIAFLG-----------------AFHGRTYGSLSLTASKP----VQR-----KGFFP 174
Query: 549 DPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602
P V Y + W + PE + +++ + D +F + ++A
Sbjct: 175 LMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIE------DYLFKKLVPPEEVA----- 223
Query: 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFD 660
A+I+EP+ GG ++V P F+ L K I +I D
Sbjct: 224 -------------------AIIVEPI-QGEGG-YVVPPKNFFKE-LRKLADKYGILLIDD 261
Query: 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703
EV TG R G + G PDI K + GG +PL A +
Sbjct: 262 EVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIG 303
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 67.4 bits (165), Expect = 8e-12
Identities = 73/270 (27%), Positives = 109/270 (40%), Gaps = 61/270 (22%)
Query: 438 PENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495
P V YE L+ AE L + G +FS++G+ AIE ALK+A
Sbjct: 79 PSGVIYYESILKLAEEL-AEITPGGLDCFFFSNSGAEAIEGALKLA-------------- 123
Query: 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGFLQQPWYSGRGLFLDPPTVF 554
K T++ +++ G +HG TLGA+ S Y + QP L
Sbjct: 124 --KHVTKR---PYIISFTGCFHGRTLGALSVTTSKSKYRKY-YQP--------LLGSVYQ 169
Query: 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614
P + + +D C + + DL S++ ++
Sbjct: 170 ---------APYPYCDRCPKGEDPEVCFLECL-------RDLESLFKHQVTPEE------ 207
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+IIEPV+ GG + F + L + C I +IFDEV TGF R G
Sbjct: 208 -----VAAVIIEPVL-GEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA 261
Query: 675 ADLLGCVPDIACYGKLLTGGVIPLAATLAT 704
A G VPDI K + G +PL+A +A+
Sbjct: 262 AQTFGVVPDIMTIAKGIASG-LPLSAVVAS 290
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 65.1 bits (159), Expect = 5e-11
Identities = 70/265 (26%), Positives = 102/265 (38%), Gaps = 70/265 (26%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
E A+ECAE L + G G +R F+ G++AI +ALK+A R + +
Sbjct: 113 ETAIECAEKLTEIAG-GELNRVLFAPGGTSAIGMALKLA-RHITGNF------------- 157
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562
KV++L S+HG +L A+ G F M
Sbjct: 158 -----KVVSLWDSFHGASLDAISV---------------GGEACFRQGMGPLMAG----- 192
Query: 563 SLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI-YSSYISQNLLQNPGLKVSGCIG 621
VE R + + D SD+ Y Y+ ++ G IG
Sbjct: 193 ----------VERIPPAVSYRG--AFPDADGSDVHYADYLEYV---------IEKEGGIG 231
Query: 622 ALIIEPVVHAAGGMHMVDP--LFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLL 678
A I E V + V ++R V+E C + +I DE+ G R G T
Sbjct: 232 AFIAEAVRNTD---VQVPSKAYWKR--VREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286
Query: 679 GCVPDIACYGKLLTGGVIPLAATLA 703
G PDI C GK L GG++P+AA +
Sbjct: 287 GIEPDILCIGKGLGGGLVPIAAMIT 311
>gnl|CDD|234625 PRK00090, bioD, dithiobiotin synthetase; Reviewed.
Length = 222
Score = 61.4 bits (150), Expect = 1e-10
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 30/182 (16%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R+SG E V + +EE +SPHLAA E GV D +E + LR L +
Sbjct: 55 RLSGLPLDY--EDVN--PYRFEEPLSPHLAAALE--GVAID---LEKISAALRR-LAQQY 104
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+ L +VE AGG+ P DL + +LP ILV +LG I+ T+ E+
Sbjct: 105 D--------LVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEA 156
Query: 274 LKLRGYDVVAVVFEDHGLVNEVPL------MSYLRNR--VPVL-VLPPLPQDSSNDLMEW 324
++ RG + V + P ++ L P+L LP L + E+
Sbjct: 157 IRARGLPLAGWVA---NGIPPEPGLRHAENLATLERLLPAPLLGELPYLAEAELAAAAEY 213
Query: 325 FD 326
D
Sbjct: 214 LD 215
Score = 32.5 bits (75), Expect = 0.61
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 46 NTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83
+T +GKT+V+A L+ + A KP+Q+G
Sbjct: 8 DTDVGKTVVTAALAQALR-----EAGYSVAGYKPVQSG 40
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 62.9 bits (153), Expect = 2e-10
Identities = 74/280 (26%), Positives = 106/280 (37%), Gaps = 63/280 (22%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
+ H F YEP LE E + Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIA--------- 122
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T++ V+A G+YHG T + TG + P+ +G GL P
Sbjct: 123 -------RAATKRS---GVIAFTGAYHGRTHYTLA------LTGKVN-PYSAGMGLM--P 163
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
V+ P L+ + E D S + IF + D+A+I
Sbjct: 164 GHVYR------ALYPCPLHG-VSE--DDAIASIERIFKNDAAPEDIAAI----------- 203
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
IIEPV GG + P F + L C I +I DEV TG R G
Sbjct: 204 -------------IIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG 249
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
+ +G D+ + K + GG PLA V D+
Sbjct: 250 TLFAMEQMGVAADLTTFAKSIAGG-FPLAGVTGRAEVMDA 288
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 62.8 bits (153), Expect = 2e-10
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP+ GG+ + + + K C +I DEV TG R G +
Sbjct: 232 VAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHEN 290
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
PDI C K L GGV+P+ AT+AT VF
Sbjct: 291 VQPDILCLAKALGGGVMPIGATIATEEVFSVLF 323
Score = 32.0 bits (73), Expect = 1.3
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 20/79 (25%)
Query: 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA 523
++F ++G+ ++E ALK+A + GK T +A G++HG +LGA
Sbjct: 144 SFFCNSGTESVEAALKLA--------KAYQSPRGKFT--------FIATSGAFHGKSLGA 187
Query: 524 MEAQAPS----PYTGFLQQ 538
+ A A S P+ L
Sbjct: 188 LSATAKSTFRKPFMPLLPG 206
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 62.7 bits (153), Expect = 2e-10
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F L + +IFDEV TGF R+ + +
Sbjct: 196 IAGVIVEPV---AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEY 251
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 252 FGVEPDLTTLGKIIGGG-LPVGA 273
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 62.2 bits (152), Expect = 4e-10
Identities = 84/367 (22%), Positives = 134/367 (36%), Gaps = 100/367 (27%)
Query: 364 PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT----QGPDATLQI 419
PF+ K + E+ VI E ++ + NK + D A W G
Sbjct: 21 PFSDMKALNEKGSRVITR--AEGVYLWDSEGNKIL----DGMAGLWCVNVGYGRK----- 69
Query: 420 ELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
ELA D R + + F + + PA+E A L + G+ + +F+++GS A +
Sbjct: 70 ELA-DAAARQMRELPYYNTFF-KTTHPPAIELAAKLAEVAPPGF-NHVFFTNSGSEANDT 126
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--------MEAQA 528
L+M + GK +K + +++ K YHG T+ M Q
Sbjct: 127 VLRMVRHYW--------ALKGK--PQKKV---IISRKNGYHGSTVAGASLGGMKYMHEQG 173
Query: 529 PSPYTGF--LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
P G + QP++ G G + P ++ L+ L +KI+E
Sbjct: 174 DLPIPGIVHIDQPYWFGEGGDMTPE-------EFGLAAARQLEAKILE------------ 214
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD----PLF 642
+ + A I EP+ AGG+ + P
Sbjct: 215 LGADN----------------------------VAAFIGEPI-QGAGGVIIPPATYWPEI 245
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
QRI C+ I ++ DEV GF R G + G PD+ K LT G IP+ A
Sbjct: 246 QRI----CRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVG 301
Query: 703 ATNAVFD 709
+ V +
Sbjct: 302 VGDRVAE 308
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 61.4 bits (150), Expect = 6e-10
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
I A+I+EPV G +V P F L + + +IFDEV TGF R+ +
Sbjct: 199 DDIAAVIVEPVAGNMG---VVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQ 254
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG+ P+ A
Sbjct: 255 GYYGVEPDLTTLGKIIGGGL-PIGA 278
Score = 29.1 bits (66), Expect = 9.7
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 21/76 (27%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
E +E AELL++ V + F ++G+ A A+++A R ++ G+D
Sbjct: 93 ELEVELAELLIERVPS--IEKVRFVNSGTEATMSAIRLA-RAYT----------GRD--- 136
Query: 503 KCIELKVLALKGSYHG 518
K++ +G YHG
Sbjct: 137 -----KIIKFEGCYHG 147
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 58.9 bits (143), Expect = 4e-09
Identities = 73/284 (25%), Positives = 112/284 (39%), Gaps = 75/284 (26%)
Query: 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA--FRKFSFDHEVLVDFLGKD 499
+EPA++ AE L + +G + +FS++GS A E A K+A + +
Sbjct: 88 HEPAIKLAEKLNEWLGGEY--VIFFSNSGSEANETAFKIARQYHAQKGEPH--------- 136
Query: 500 TTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPY------TGFLQQPWYSGRGLFLDPP 551
K ++ +YHG+++GA+ A QA Y GFL P PP
Sbjct: 137 ------RYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVP----------PP 180
Query: 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611
C R E D DL + I + +
Sbjct: 181 ----------------------------DCYRMPGIESE-DIYDLECV--KEIDRVMTW- 208
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLG 670
++S I A+I+EP++ GG+ M + + VKE CQ +I DEV GF R G
Sbjct: 209 ---ELSETIAAVIMEPII-TGGGVLMPPQDYMK-AVKEICQKHGALLISDEVICGFGRTG 263
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714
G PDI K +T +PL+AT ++++F G
Sbjct: 264 KAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGK 307
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 58.9 bits (142), Expect = 4e-09
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP+ GG+ + + + C +I DEV TG R G + G
Sbjct: 225 VAAIILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEG 283
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVF 708
PDI C K L GGV+P+ AT+AT AVF
Sbjct: 284 VQPDILCLAKALGGGVMPIGATIATEAVF 312
Score = 32.3 bits (73), Expect = 1.1
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 28/75 (37%)
Query: 464 AYFSDNGSTAIEIALKMAFR------KFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517
++F ++G+ ++E ALK+A KF+F +A G++H
Sbjct: 137 SFFCNSGTESVEAALKLAKAYQSPRGKFTF----------------------IAASGAFH 174
Query: 518 GDTLGAMEAQAPSPY 532
G +LGA+ A A +
Sbjct: 175 GKSLGALSATAKPAF 189
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 58.1 bits (141), Expect = 8e-09
Identities = 64/271 (23%), Positives = 100/271 (36%), Gaps = 70/271 (25%)
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
E A L+ + G S+ +F++ G+ A E A++MA R + G+
Sbjct: 99 EAARLIAE-RAPGDLSKVFFTNGGADANEHAVRMA-RLHT----------GRP------- 139
Query: 507 LKVLALKGSYHGDTLGAMEAQA-----PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561
KVL+ SYHG T A+ P+ +G F P F+Y S++
Sbjct: 140 -KVLSAYRSYHGGTGSAINLTGDPRRWPNDTGR-------AGVVHFFGP---FLYRSEFH 188
Query: 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621
+ E + + H I E + I
Sbjct: 189 ATTEEEECERALAHL------ERVIELEGPST--------------------------IA 216
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A+++E V AG +V P V+E C I +I DEV GF R G + G
Sbjct: 217 AILLESVPGTAG--ILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV 274
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
VPD+ + K + G +PL + A+ +F
Sbjct: 275 VPDLITFAKGVNSGYVPLGGVAISEAIAATF 305
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 57.4 bits (139), Expect = 1e-08
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLL 678
I A I EP++ +GG+ + P + + + C+ I I DEV TGF RLG + +
Sbjct: 221 IAAFIAEPIL-GSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVF 279
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKK 717
G PDI + K LT G PL A + + + D G + K
Sbjct: 280 GIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAK 318
Score = 30.8 bits (70), Expect = 2.6
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 42/172 (24%)
Query: 364 PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQI---- 419
P+ + +E VI E V +++ D W + +
Sbjct: 22 PWHDFSSLGKEGSLVIVE--AEGIYVTDADGRRYL----DGIGGMWC------VNVGYGR 69
Query: 420 -ELARDMGYTAAR------FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGST 472
E+A + A R FG + PA E A L + G + + + GST
Sbjct: 70 EEMADAIADQARRLPYYTPFGDMTNA-----PAAELAAKL-AELAPGDLNHVFLTTGGST 123
Query: 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
A++ AL+ + F+ G+ + ++ +YHG T
Sbjct: 124 AVDSALRFV--HYYFNV------RGRPAKK-----HIITRGDAYHGSTYLTA 162
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 57.0 bits (139), Expect = 2e-08
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I+EPV AG M +V P F L + C +IFDEV TGF R+ +
Sbjct: 198 IAAVIVEPV---AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGY 253
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 254 YGVTPDLTTLGKIIGGG-LPVGA 275
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 54.3 bits (131), Expect = 1e-07
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
LLQ+P + A I+EP+ G+ + D + + + + C+ + +I DE+ TG
Sbjct: 173 LLQDPN------VAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLG 225
Query: 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
R G D G PDI GK L+GG+ P++A LA + V
Sbjct: 226 RTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVI 269
>gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].
Length = 223
Score = 52.7 bits (127), Expect = 1e-07
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R+SG + S EL+ + ++E +SPHLAAE E G + +E L + LR L+
Sbjct: 58 RLSGLDLSY--ELIN--PYRFKEPLSPHLAAELE-----GRTIDLEKLSQGLRQLLK--- 105
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
K +++ +VE AGG+ P DL +LP ILV +LG I+ T+ E+
Sbjct: 106 -----KYDLV-LVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEA 159
Query: 274 LKLRGYDVVAVVF 286
L+ RG + V
Sbjct: 160 LRARGLPLAGWVA 172
Score = 40.3 bits (95), Expect = 0.002
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 46 NTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG---YPHDSDSRFLFTKLPSLSL 102
+T +GKT+VSA L KP+QTG +SD+ L +L L L
Sbjct: 11 DTGVGKTVVSAAL-----AQALKQQGYSVAGYKPVQTGSEETAENSDALVL-QRLSGLDL 64
Query: 103 RRNFPSSLILS 113
+
Sbjct: 65 SYELINPYRFK 75
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 54.5 bits (131), Expect = 1e-07
Identities = 69/282 (24%), Positives = 106/282 (37%), Gaps = 57/282 (20%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A F H F YE + AE L + ++ F ++G+ A+E A+K+A R ++
Sbjct: 62 VAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYT-- 118
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
G+ V+A +HG T M A P+ SG G F
Sbjct: 119 --------GRPG--------VVAFDHGFHGRTNMTMALTAKV-------MPYKSGFGPF- 154
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ LP + Y + K ++ +LA+ + ++
Sbjct: 155 -APEVYR------APLP-YPYRDGLLDKQLST------------DGELAAARAIFVIDVG 194
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
N + AL+IEPV GG + F L+ C+ I I DEV TGF R
Sbjct: 195 ANN--------VAALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR 245
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G + G PD+ K L G +PL+ + D+
Sbjct: 246 TGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDA 286
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 54.1 bits (131), Expect = 1e-07
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A GHV N++ EP + AE L++ +G R +F ++G+ A E A K+A
Sbjct: 72 LATLGHV---SNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-- 126
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
G+ K++A +G +HG T+GA+
Sbjct: 127 ----------GRT--------KIVAAEGGFHGRTMGAL 146
Score = 32.6 bits (75), Expect = 0.68
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRIL--VKE-CQNRKIPVIFDEVFTGFWRLGVE 672
V A+ +EP+ AG V P L +E ++ DEV TG R G
Sbjct: 180 VDDDTAAVFLEPIQGEAG----VVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAW 235
Query: 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G PD+ K L GG +P+ A LA D
Sbjct: 236 FAHQHDGVTPDVVTLAKGLGGG-LPIGACLAFGPAADLL 273
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 54.0 bits (130), Expect = 2e-07
Identities = 70/280 (25%), Positives = 101/280 (36%), Gaps = 63/280 (22%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
RF H YE + AE L V +A + F G+ A+E A+K+A
Sbjct: 71 RFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIA--------- 121
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T + V+A G +HG T M TG + P+ G G
Sbjct: 122 -------RAATGRS---AVIAFGGGFHGRTFMGMS------LTGKVV-PYKVGFGA---- 160
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
M + + P L+ VE + + D++F + D +A+I
Sbjct: 161 ----MMPDVYHVPFPVELHGVSVEQ---SLAALDKLFKADVDPQRVAAI----------- 202
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
IIEPV GG + F + L + C I +I DEV TGF R G
Sbjct: 203 -------------IIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTG 248
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
+ D+ K L GG PLAA + D+
Sbjct: 249 KLFAMEHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDA 287
>gnl|CDD|129447 TIGR00347, bioD, dethiobiotin synthase. Dethiobiotin synthase is
involved in biotin biosynthesis and catalyses the
reaction (CO2 + 7,8-diaminononanoate + ATP =
dethiobiotin + phosphate + ADP). The enzyme binds ATP
(see motif in first 12 residues of the SEED alignment)
and requires magnesium as a co-factor [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 166
Score = 50.4 bits (121), Expect = 3e-07
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 172 FAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGG 231
+A+ +SPH+AA++E + D + + L + + K + + +VE AGG
Sbjct: 65 YAFALPLSPHIAADQEGRPI--DLEELS-------KHLRTLEQ----KYDFV-LVEGAGG 110
Query: 232 VASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVV 285
+ P DL + +LP ILV +LG I+ T+ E + G + V+
Sbjct: 111 LCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVI 164
Score = 30.4 bits (69), Expect = 1.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 46 NTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY-PHDSDSRFL 93
+T +GKT+ S S L + A Y KP+QTG +SD+ L
Sbjct: 6 DTGVGKTVAS-----SALAAKLKKAGYSVGYYKPVQTGIEKTNSDALLL 49
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 53.3 bits (128), Expect = 3e-07
Identities = 70/282 (24%), Positives = 110/282 (39%), Gaps = 64/282 (22%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
+P+L+ A+ LL+ + +F+++GS A + +K+ + + LG+ +
Sbjct: 133 KPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVW--------YYNNALGRPNKK 184
Query: 503 KCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK-- 559
K I A SYHG TL A + P+ + F D P F+ ++
Sbjct: 185 KFI-----ARSKSYHGSTLISASLSGLPALHQKF-------------DLPAPFVLHTDCP 226
Query: 560 --WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
W LP E EE S+ LA +NL+ G +
Sbjct: 227 HYWRFHLP------------------GET--EEEFSTRLADNL-----ENLILKEGPET- 260
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRI--LVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
I A I EPV+ A G + F++I ++K+ I I DEV F RLG
Sbjct: 261 --IAAFIAEPVMGAGGVIPPPATYFEKIQAVLKK---YDILFIADEVICAFGRLGTMFGC 315
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKK 717
D PD+ K L+ +P+ A L + + D S K
Sbjct: 316 DKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNK 357
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 53.1 bits (128), Expect = 3e-07
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+ A+ +EPV +A G F+R V+E C + ++ DEV F RLG +
Sbjct: 222 VAAVFLEPVQNAGGCFPPPPGYFER--VREICDRYDVLLVSDEVICAFGRLGEMFGCERF 279
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G VPDI K +T G PL A +A++ +F+ F
Sbjct: 280 GYVPDIITCAKGITSGYSPLGAMIASDRLFEPF 312
Score = 45.0 bits (107), Expect = 1e-04
Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 35/180 (19%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ 411
D+ A W FT+H + V VI GE ++ D+ +++ D A +
Sbjct: 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIV--RGEGCYIWDDRGKRYL----DGLAGLFV- 63
Query: 412 GPDATLQI-----ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRA 464
+Q+ ELA A FP Y PA+E AE L + G +R
Sbjct: 64 -----VQVGHGRAELAEAAAKQAGTLAF--FPLWSYAHPPAIELAERL-AALAPGDLNRV 115
Query: 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
+F+ GS A+E A K+A + F GK K I + +YHG T GA+
Sbjct: 116 FFTTGGSEAVESAWKLAKQYFKL--------TGKPGKHKVISRAI-----AYHGTTQGAL 162
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 52.6 bits (127), Expect = 5e-07
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 622 ALIIEPVVHA-AGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A + E VV A AG + V F+RI +E C + +I DEV G R G + G
Sbjct: 202 AFVAETVVGATAGAVPPVPGYFKRI--REVCDRYGVLLILDEVMCGMGRTGTLFACEEDG 259
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
PD+ K L G P+ A LA++ ++D+ S
Sbjct: 260 VAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGS 295
Score = 52.3 bits (126), Expect = 6e-07
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EPA A+ L+ G YF GS A+E ALK+A R++ F+ +
Sbjct: 73 EPAEALADRLVAAAPAG-LEHVYFVSGGSEAVEAALKLA-RQY---------FVEIGQPQ 121
Query: 503 KCIELKVLALKGSYHGDTLGAMEA 526
+ +A + SYHG+TLGA+
Sbjct: 122 R---RHFIARRQSYHGNTLGALAI 142
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 52.0 bits (125), Expect = 6e-07
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EPV GG+ F + L + + +I DEV TG R G +L G
Sbjct: 182 AVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIE 240
Query: 682 PDIACYGKLLTGGVIPLAATLATNAV 707
PDI GK + GGV PLAA LA V
Sbjct: 241 PDIMTLGKGIGGGV-PLAALLAKAEV 265
Score = 30.8 bits (70), Expect = 2.3
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EP + A LL + +F+++G+ A E A+K+A RK+ H
Sbjct: 78 EPMAKLAGLL---TQHSCFDKVFFANSGAEANEGAIKLA-RKWGRKH------------- 120
Query: 503 KCIELKVLALKGSYHGDTLGAMEA 526
K +++ S+HG TL M A
Sbjct: 121 KNGAYEIITFDHSFHGRTLATMSA 144
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 51.8 bits (125), Expect = 8e-07
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL-- 677
A++IEP+ GG+ F + L + C + +IFDEV G R T L
Sbjct: 176 TAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGR-----TGKLFA 229
Query: 678 ---LGCVPDIACYGKLLTGGVIPLAATLATNAV 707
G PDI K + GG PL A LAT
Sbjct: 230 HEWAGVTPDIMAVAKGIGGG-FPLGACLATEEA 261
Score = 41.0 bits (97), Expect = 0.002
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 29/122 (23%)
Query: 429 AARFGHVMFPENVYE-PALE-CAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + HV N+Y P E AE L V +A + +F+++G+ A+E A+K A R++
Sbjct: 60 AEKLWHV---SNLYRIPEQERLAERL---VENSFADKVFFTNSGAEAVECAIKTA-RRYH 112
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT--------GFLQQ 538
+ GK E+ +++ +G++HG TL + A Y GF Q
Sbjct: 113 Y---------GKGHPER---YRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQV 160
Query: 539 PW 540
P+
Sbjct: 161 PF 162
>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 433
Score = 51.7 bits (124), Expect = 8e-07
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDE 661
I Q ++ + G +V+G +I EP+ M +V P F +++ C+ I DE
Sbjct: 190 IFQTVMNSLGHRVAG----VIFEPI---CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDE 242
Query: 662 VFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
V TGF R+ A + PDI YGK+L GG +P AA +A ++ D
Sbjct: 243 VVTGF-RVAQGGAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMD 288
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 51.7 bits (124), Expect = 9e-07
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A + EP+ AG + + + + + + C + +I DE+ TG R G D
Sbjct: 225 IAAFLFEPIQGEAGVV-IPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEE 283
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAV 707
PD+ GK L GGVIP++A LA V
Sbjct: 284 VRPDVVILGKALGGGVIPVSAVLADKDV 311
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 51.2 bits (123), Expect = 1e-06
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 620 IGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A I EPV+ AGG+ +V P +++I + I ++ DEV GF R G +
Sbjct: 219 IAAFIGEPVM-GAGGV-IVPPKTYWEKIQAV-LRKYDILLVADEVICGFGRTGNMFGCET 275
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKK 717
G PDI K L+ PL+A L V+D +S K
Sbjct: 276 FGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGK 315
Score = 36.5 bits (85), Expect = 0.041
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 46/173 (26%)
Query: 364 PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELAR 423
P+T + EE VI+ GE VY D ++I + A W+
Sbjct: 19 PYTNARRHEEEGPLVIER--GEGIYVYDDAGKRYI----EGMAGLWSVA----------- 61
Query: 424 DMGYT-------AAR------FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
+G++ AAR F H F + P ++ AE L+ + S+ +F+++G
Sbjct: 62 -LGFSEQRLVEAAARQMKKLPFYH-TFSHKSHGPVIDLAEKLVA-MAPVPMSKVFFTNSG 118
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA 523
S A + +K+ + + + LG+ EK K+++ + YHG T+ +
Sbjct: 119 SEANDTVVKLVW----YYNNA----LGR--PEK---KKIISRQRGYHGVTIAS 158
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 48.6 bits (116), Expect = 8e-06
Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EP+ GG+ DP F + L + C +IFDEV TG R G G
Sbjct: 182 AVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 240
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
PDI K L GG P+ A L T + VG
Sbjct: 241 PDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGT 273
Score = 45.1 bits (107), Expect = 1e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 22/123 (17%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
EL + + A + H+ N Y EP L A+ L V +A + +F ++G+ A E A
Sbjct: 55 ELVKALIEQADKLWHI---GNGYTNEPVLRLAKKL---VDATFADKVFFCNSGAEANEAA 108
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GFL 536
LK+A R+++ D G D +E ++A K S+HG TL + Y+ GF
Sbjct: 109 LKLA-RRYALDK------HGADKSE------IVAFKNSFHGRTLFTVSVGGQPKYSQGFA 155
Query: 537 QQP 539
P
Sbjct: 156 PLP 158
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 48.5 bits (116), Expect = 9e-06
Identities = 60/243 (24%), Positives = 91/243 (37%), Gaps = 77/243 (31%)
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI---ELKVLALKGSYHGDTLGAMEA 526
G+ A+E A+K+A RK+ + K I + +++ KG++HG TLGA+
Sbjct: 103 GAEAVETAIKLA-RKWGYK-------------VKGIPENQAIIVSAKGNFHGRTLGAISM 148
Query: 527 QA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585
P T F G ++ YN
Sbjct: 149 STDPDSRTNF---------GPYVPGFKKIPYN---------------------------- 171
Query: 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645
+ L L++ G V A I+EP+ AG + D ++
Sbjct: 172 ------NLEALEEA---------LEDHGPNVC----AFIVEPIQGEAGVVVPDDGYLKK- 211
Query: 646 LVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLAT 704
V+E C + +I DE+ TG R G D PDI GK L+GGV P++A LA
Sbjct: 212 -VRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLAD 270
Query: 705 NAV 707
+ V
Sbjct: 271 DDV 273
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 47.4 bits (113), Expect = 2e-05
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
G A+ +EPV GG++ F + L C ++FDEV G R G
Sbjct: 164 QKGKTAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAH 222
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GD 714
+ G PDI K L GG +P+ A L T V + GD
Sbjct: 223 EAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGD 261
Score = 44.3 bits (105), Expect = 2e-04
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A HV NVY P +E A+ L V +A R +F ++G+ A E A+K A RK+
Sbjct: 44 AGTLAHV---SNVYHTIPQVELAKRL---VASSFADRVFFCNSGTEANEAAIKFA-RKY- 95
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
V E ++ S+HG TLGA+
Sbjct: 96 --QRVRAPDKKDPAASSATEF--VSFSNSFHGRTLGAL 129
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 46.9 bits (112), Expect = 2e-05
Identities = 68/275 (24%), Positives = 103/275 (37%), Gaps = 86/275 (31%)
Query: 440 NVYEPAL--ECAELLLQG-VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496
N++ +L E A LL + G +F ++G+ A E ALK+A RK +
Sbjct: 66 NLFTNSLQEEVASLLAENSAGD----LVFFCNSGAEANEAALKLA-RKHT---------- 110
Query: 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556
GK K++ + S+HG T G M A TG Q+ G G P
Sbjct: 111 GKS--------KIVTFEQSFHGRTFGTMSA------TG--QEKIKEGFG-----PL---- 145
Query: 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKV 616
LP + + V DI + E + ++A++
Sbjct: 146 -------LPGFTH---VPFNDI------KALKEVMN-EEVAAV----------------- 171
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
++E VV GG+ DP F + + C+ +I DEV TG R G +
Sbjct: 172 -------MLE-VVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYE 223
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G PDI K L G IP+ A + + +F
Sbjct: 224 QFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGTAF 257
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 46.6 bits (111), Expect = 3e-05
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EP+ GG+ D F + L + C +IFDEV TG R G G
Sbjct: 186 AVIVEPIQ-GEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 244
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
PD+ K L GG P+ A L T
Sbjct: 245 PDVLTTAKALGGG-FPIGAMLTTEKCASVMT 274
Score = 42.4 bits (100), Expect = 6e-04
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
L + A++F H N Y EP L A+ L+ +A R +F ++G+ A E A
Sbjct: 59 ALREALNEQASKFWHT---GNGYTNEPVLRLAKKLIDAT---FADRVFFCNSGAEANEAA 112
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537
LK+A RK++ D G + ++A K ++HG TL + A
Sbjct: 113 LKLA-RKYAHDR------YGSHKSG------IVAFKNAFHGRTLFTVSAGG--------- 150
Query: 538 QPWYS 542
QP YS
Sbjct: 151 QPKYS 155
>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 428
Score = 46.5 bits (111), Expect = 4e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAG--GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ A+++EP+V G G+ P F + + VI+DEV T F R DL
Sbjct: 201 VAAVLVEPIV---GNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDL 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK++ GG +P+ A
Sbjct: 257 LGVEPDLTALGKIIGGG-LPIGA 278
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 46.5 bits (111), Expect = 4e-05
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 620 IGALIIEPVVHAAGGMHMVDP------LFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673
I A I EPV+ G +V P Q +L K I +I DEV TGF RLG
Sbjct: 221 IAAFIAEPVLGTGG---IVPPPAGYWPAIQAVLKK----YDILLIADEVVTGFGRLGSMF 273
Query: 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
+D G PD+ K LT PL+ ++ V+D
Sbjct: 274 GSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWD 309
>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase.
Length = 474
Score = 46.3 bits (110), Expect = 4e-05
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
G I A+I+EPVV +G + + F L + + ++FDEV TGF R+ +
Sbjct: 245 GEIAAVILEPVVGNSGFI-VPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEY 302
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 303 FGITPDLTTLGKVIGGG-LPVGA 324
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 46.1 bits (110), Expect = 4e-05
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EP+ GG+ P F + L + C +IFDEV TG R G G
Sbjct: 187 AVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVT 245
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VG 713
PDI K L GG P+ A L T + F VG
Sbjct: 246 PDILTSAKALGGG-FPIGAMLTTAEIASHFKVG 277
Score = 43.8 bits (104), Expect = 2e-04
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 18/84 (21%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
NV+ EPAL A+ L + +A R +F+++G+ A E A K+A R+++ D G
Sbjct: 77 NVFTNEPALRLAKKL---IDATFAERVFFANSGAEANEAAFKLA-RRYACDR------HG 126
Query: 498 KDTTEKCIELKVLALKGSYHGDTL 521
+ TE ++A S+HG TL
Sbjct: 127 PEKTE------IIAFHNSFHGRTL 144
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 45.6 bits (108), Expect = 6e-05
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+++EP+ GG ++ P F L C I +I DEV TGF R G +
Sbjct: 199 VAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYD 257
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PD+ K L GG +P++A + V D+
Sbjct: 258 VKPDLITMAKSLGGG-MPISAVVGRAEVMDA 287
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 45.4 bits (108), Expect = 8e-05
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+IIEP+ GG + F L++ C+ + I DEV TGF R G + G V
Sbjct: 222 AVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIV 280
Query: 682 PDIACYGKLLTGGVIPLAA 700
PD+ K + GG +PL+A
Sbjct: 281 PDLITTAKGIAGG-LPLSA 298
Score = 30.8 bits (70), Expect = 3.1
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
ARF H F YE + AE L + R+ ++G+ A+E A+K+A R ++
Sbjct: 85 VARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIA-RSYT-- 141
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PY-TGF 535
G+ V+ +YHG T M A S PY +GF
Sbjct: 142 --------GRQA--------VVVFDHAYHGRTNLTMALTAKSMPYKSGF 174
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 45.1 bits (107), Expect = 8e-05
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 622 ALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A ++EP+ AG + P F + + C+ + I DE+ TG R G D
Sbjct: 189 AFLVEPIQGEAG---INIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDN 245
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PD+ GK L GGV P++ A + F
Sbjct: 246 VTPDMYILGKALGGGVFPISCVAANRDILGVF 277
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 44.6 bits (105), Expect = 1e-04
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 601 SSYISQNLLQNPGLKVSGCI--GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
S +N +++ SG A+I+E + GG+ + + + + + I +I
Sbjct: 189 SIEYFENFIEDVE---SGVDKPAAVILE-AIQGEGGVVAAPSEWLQKIREVTRKHDIKLI 244
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
DEV GF R G + G PD K + GG +PLA L FD++
Sbjct: 245 LDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLAVLLIAPE-FDAW 295
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 44.0 bits (104), Expect = 2e-04
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I I EP+ G H P F R + C +IFDEV TG G LG
Sbjct: 219 IACFIAEPIQGEGGDNHF-RPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLG 277
Query: 680 CVPDIACYGK 689
PDI +GK
Sbjct: 278 VQPDIVAFGK 287
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 43.6 bits (103), Expect = 3e-04
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDP---LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+ AL EP+ AG M+ P F++ L K I ++ DEV +G R G +
Sbjct: 205 VAALFAEPIQGDAG---MIVPPEDYFKK-LKKILDEHGILLVVDEVQSGLGRTGKWFAIE 260
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G PDI GK L GG +P++AT+ + DS
Sbjct: 261 HFGVEPDIITLGKPLGGG-LPISATIGRAEIMDS 293
>gnl|CDD|239383 cd03109, DTBS, Dethiobiotin synthetase (DTBS) is the penultimate
enzyme in the biotin biosynthesis pathway in Escherichia
coli and other microorganisms. The enzyme catalyzes
formation of the ureido ring of dethiobiotin from
(7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon
dioxide. The enzyme utilizes carbon dioxide instead of
hydrogen carbonate as substrate and is dependent on ATP
and divalent metal ions as cofactors.
Length = 134
Score = 40.9 bits (96), Expect = 4e-04
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 225 IVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAV 284
+VE AGG+ P D+ + LP ILV LG I+ E+ +++G + V
Sbjct: 43 LVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGV 102
Query: 285 VFEDHGLVNEVPLMSYLRNRVPVLVLPPLP 314
+ E + + +P L
Sbjct: 103 LGNVIVE-KEGLATLNVETIERLTGIPVLG 131
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 42.9 bits (101), Expect = 4e-04
Identities = 63/282 (22%), Positives = 108/282 (38%), Gaps = 56/282 (19%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
++ H F +YEP +E AE L + + F ++G+ A+E A+K+A RK++
Sbjct: 83 VDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIA-RKYT-K 140
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ ++ F +G +HG TL M + +P+ G G F
Sbjct: 141 RQGIISFS----------------RG-FHGRTLMTMTMTSKV-------KPYKFGFGPF- 175
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ + PE +T D+ EE + ++ + I+
Sbjct: 176 -APEVYKAPFPYEYRRPE----------GLTEEQYDDFMIEEFKNFFISEVAPETIA--- 221
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
A+++EPV GG + F + + C I + DE+ TGF R
Sbjct: 222 -------------AVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFAR 267
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G + VPD+ K L GV P++ + + D
Sbjct: 268 TGKYFAIEHFDVVPDLITVSKSLGAGV-PISGVIGRKEIMDE 308
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 42.8 bits (101), Expect = 5e-04
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A ++EP+ AG + F R V+E C + +I DE+ TG R G + G
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTR--VRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI 247
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAV 707
D+ GK L+GG P++A L+ + V
Sbjct: 248 EADVTLIGKALSGGFYPVSAVLSNSEV 274
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 42.5 bits (100), Expect = 6e-04
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++E +V G+ D F + L CQ I +I DEV TG R G + G
Sbjct: 168 AVMLE-LVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE 226
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PDI K L GV P+ A LA +++ +F
Sbjct: 227 PDIFTLAKGLANGV-PVGAMLAKSSLGGAF 255
Score = 32.5 bits (74), Expect = 0.71
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 19/63 (30%)
Query: 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA 523
A+F ++G+ A E A+K+A RK + GK +++ + S+HG T G+
Sbjct: 87 AFFCNSGAEANEAAIKIA-RKAT----------GKQ--------EIITFQNSFHGRTFGS 127
Query: 524 MEA 526
M A
Sbjct: 128 MSA 130
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 40.3 bits (95), Expect = 0.003
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG------FW---RLG 670
I I EP+ GG + P F + + C +IFDEV TG W +LG
Sbjct: 226 IACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLG 284
Query: 671 VETTADLLGCVPDIACYGK 689
V PDI +GK
Sbjct: 285 VR---------PDIVAFGK 294
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 40.0 bits (93), Expect = 0.004
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I EPV GG ++ + + C I +I DEV +GF R G D
Sbjct: 199 VAAIIFEPV-QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYA 257
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PD+ K L GG +PL+ + + D+
Sbjct: 258 DKPDLMTMAKSLAGG-MPLSGVVGNANIMDA 287
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 39.9 bits (93), Expect = 0.004
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 28/108 (25%)
Query: 433 GHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF--- 487
G + NV+ P L+ AE L+ +A + + ++G+ A E A+K+ RK++
Sbjct: 70 GKLWHTSNVFYSAPPLKLAEELVTA--SRFAEKVFLCNSGTEANEAAIKLV-RKWASSQG 126
Query: 488 ---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532
D V+V F +GS+HG TL A+ A A Y
Sbjct: 127 RPADKRVIVTF-----------------RGSFHGRTLAAVTATAQPKY 157
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 39.5 bits (92), Expect = 0.005
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVD----PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
+ + EP AGGM P QRI C+ + + DEV GF R G
Sbjct: 223 VAGFVAEPF-QGAGGMIFPPESYWPEIQRI----CRQYDVLLCADEVIGGFGRTGEWFAH 277
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
+ G PD K LT G +P+ + + + ++ V
Sbjct: 278 EHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALV 314
>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional.
Length = 459
Score = 39.3 bits (92), Expect = 0.007
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGC-----VPDIACYGKLLTGGVIPLAATLAT 704
C+ I + DEV TGF R T L C VPD+ K LT G +P+ A L +
Sbjct: 245 CRELGILFVADEVITGFGR-----TGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMS 299
Query: 705 NAVFD 709
+ V+
Sbjct: 300 DHVYQ 304
>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase;
Provisional.
Length = 431
Score = 38.5 bits (90), Expect = 0.010
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 618 GCIGALIIEPVVH---AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF-WRLGVET 673
G I +I+EP G +H V +R+ C I DE+ TGF W +
Sbjct: 186 GRIACVILEPATADEPQDGFLHEV----RRL----CHENGALFILDEMITGFRWHMRGAQ 237
Query: 674 TADLLGCVPDIACYGKLLTGGVIPLAA 700
L G VPD++C+GK L G ++A
Sbjct: 238 K--LYGIVPDLSCFGKALGNG-FAVSA 261
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 38.5 bits (90), Expect = 0.011
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 601 SSYISQNLLQNPGLKVSGCI--GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
Y+ +NLL +P SG + A+I+E VV GG+ + R L + + IP+I
Sbjct: 215 LHYL-ENLLDDPE---SGVVLPAAVILE-VVQGEGGVIPAPIEWLRGLRRITEEAGIPLI 269
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
DE+ +GF R G + G +PD+ K + GG +PLA +
Sbjct: 270 VDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAI-GGSLPLAVVV 312
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 38.5 bits (90), Expect = 0.013
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 658 IFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
I DEV GF R+G A + G VPDI GK + G P+ A + T + DSF
Sbjct: 822 IADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGH-PMGAVVTTREIADSF 875
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 37.3 bits (87), Expect = 0.025
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 622 ALIIEPVVHAAGGMHMV-DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A+I+E V GG+++ D QR+ K C+ I +I D++ G R G + + G
Sbjct: 197 AVILETV-QGEGGINVASDEWLQRL-EKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI 254
Query: 681 VPDIACYGKLLTGGVIPLAATL 702
PDI C K ++G +PLA TL
Sbjct: 255 EPDIVCLSKSISGYGLPLALTL 276
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 37.2 bits (86), Expect = 0.028
Identities = 63/282 (22%), Positives = 104/282 (36%), Gaps = 63/282 (22%)
Query: 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479
+L + + A H M E A+ AE L + + + F +GS A+++A+K
Sbjct: 73 KLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAE-ISPIENPKVLFGLSGSDAVDMAIK 131
Query: 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539
++ KFS ++ F+G +YHG TLGA A Q
Sbjct: 132 VS--KFSTRRPWILAFIG-----------------AYHGQTLGATSVAA-------FQSS 165
Query: 540 WYSGRGLFLDPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593
RG P V Y + W ++ YEE D
Sbjct: 166 --QKRGFSPLMPNVVWIPYPNPYRNPWGIN-----------------------GYEEPD- 199
Query: 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653
+L + + Y+ + + + + AL EP+ AG + + F+ L K
Sbjct: 200 -ELINRFLDYLENYVFSH--VVPPDEVAALFAEPIQGDAGIVVPPENFFKE-LKKLLDEH 255
Query: 654 KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695
I ++ DEV TG R G ++ PD+ +GK + G+
Sbjct: 256 GILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASGM 297
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 36.6 bits (85), Expect = 0.042
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ ++IE + GG+ P + L K C+ I D++ G R G ++
Sbjct: 208 VACIVIETI-QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFN 266
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PD+ +GK L GG +P++A + + +S
Sbjct: 267 ITPDLMSFGKSLAGG-MPMSAIVGRKEIMES 296
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 33.6 bits (77), Expect = 0.41
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+E + GG++ + + + + Q I +I DEV GF R G + G
Sbjct: 228 AVILE-AIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIE 286
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PDI K + GG +PL A L FD++
Sbjct: 287 PDIIVMSKAVGGG-LPL-AVLGIKKEFDAW 314
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2.
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA
dehydrogenases (ACAD) catalyze the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACAD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. ACAD's are generally homotetramers and
have an active site glutamate at a conserved position.
Length = 394
Score = 32.4 bits (74), Expect = 0.94
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 30/138 (21%)
Query: 413 PDATLQIELARDM---GYTAARFGH--VMFPENVYEPALECAELLLQGVGKGWA------ 461
P T + + R + GY A GH + F +NV PA + L+L G G+G+
Sbjct: 198 PMDTPGVTIIRPLSVFGYDDAPHGHAEITF-DNVRVPA---SNLIL-GEGRGFEIAQGRL 252
Query: 462 --SRAYFSDNGSTAIEIALKM---------AFRKFSFDHEVLVDFLGKDTTEKCIE-LKV 509
R + A E AL++ AF K H V+ ++ K E IE ++
Sbjct: 253 GPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIE--IEQARL 310
Query: 510 LALKGSYHGDTLGAMEAQ 527
L LK ++ DT+G A+
Sbjct: 311 LVLKAAHMIDTVGNKAAR 328
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 30.7 bits (70), Expect = 2.7
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 22 HHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81
+ P LP P F++ + + SL L+ L+ + L S
Sbjct: 219 DSLRYGEIPGSLPSGLPHFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSF---DGM 275
Query: 82 TGYPHDSD 89
TG HDS+
Sbjct: 276 TGTKHDSN 283
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 30.3 bits (69), Expect = 3.3
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 18/57 (31%)
Query: 239 GSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEV 295
GSLQ RLP I+ GDG L L L G D+ A E GLVN V
Sbjct: 156 GSLQ-------RLPRII-GDGHL----------RELALTGRDIDAAEAEKIGLVNRV 194
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 30.6 bits (69), Expect = 3.4
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 444 PALECAELLLQGVGKGWASRA----YFSDNGSTAIEIALKMAFRKF---------SFDHE 490
P+ + A++L +G+ K A + + +GS A E+A K AF + F E
Sbjct: 102 PSKDWAKILKEGILK-VAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEE 160
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
+ +L +L+ KG++HG G++
Sbjct: 161 ENESCMDNQAP-GSPDLSILSFKGAFHGRLFGSL 193
>gnl|CDD|178163 PLN02548, PLN02548, adenosine kinase.
Length = 332
Score = 30.5 bits (69), Expect = 3.4
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 679 GCVPDI-ACYGKLLTGGVIPLAAT--LATNAVFDSFVG 713
G P + A GK+ VIPL + TN D+FVG
Sbjct: 254 GADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVG 291
>gnl|CDD|176510 cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase
domain of putative Silicibacter pomeroyi
glycerophosphodiester phosphodiesterase and similar
proteins. This subfamily corresponds to the
glycerophosphodiester phosphodiesterase domain (GDPD)
present in a group of uncharacterized bacterial
glycerophosphodiester phosphodiesterases (GP-GDE, EC
3.1.4.46) and similar proteins. The prototype of this CD
is a putative GP-GDE from Silicibacter pomeroyi (SpGDE).
It shows high sequence similarity to Escherichia coli
GP-GDE, which catalyzes the degradation of
glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols.
Length = 263
Score = 30.0 bits (68), Expect = 3.8
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 339 MLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAV 376
+ L + L K+ G W P+ LV +E V
Sbjct: 189 VALTEETTLGNLPRAAKKLGADIWSPY--FTLVTKELV 224
>gnl|CDD|217488 pfam03313, SDH_alpha, Serine dehydratase alpha chain. L-serine
dehydratase (EC:4.2.1.13) is a found as a heterodimer of
alpha and beta chain or as a fusion of the two chains in
a single protein. This enzyme catalyzes the deamination
of serine to form pyruvate. This enzyme is part of the
gluconeogenesis pathway.
Length = 269
Score = 29.7 bits (68), Expect = 4.6
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFL 496
GS I A+ +A + E L+ L
Sbjct: 107 AGSAGILPAVLLALEELGLSEEKLIRAL 134
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 29.7 bits (68), Expect = 4.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 638 VDPLFQRILVKECQNRKIPVI 658
VDP + I VKE + IPV+
Sbjct: 164 VDPNKEHIAVKEARKLGIPVV 184
>gnl|CDD|191473 pfam06214, SLAM, Signaling lymphocytic activation molecule (SLAM)
protein. This family consists of several mammalian
signaling lymphocytic activation molecule (SLAM)
proteins. Optimal T cell activation and expansion
require engagement of the TCR plus co-stimulatory
signals delivered through accessory molecules. SLAM, a
70-kDa co-stimulatory molecule belonging to the Ig
superfamily, is defined as a human cell surface molecule
that mediates CD28-independent proliferation of human T
cells and IFN-gamma production by human Th1 and Th2
clones. SLAM has also been recognised as a receptor for
measles virus.
Length = 126
Score = 28.7 bits (64), Expect = 4.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 65 SPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLR 103
SP +S KK V L + G P + + F L +LSLR
Sbjct: 69 SPGNSVKKKIVSLDLSEGGSPRYLEDGYKF-HLENLSLR 106
>gnl|CDD|227017 COG4671, COG4671, Predicted glycosyl transferase [General function
prediction only].
Length = 400
Score = 29.6 bits (67), Expect = 5.4
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 250 RLPGILVGD-GRLGGISGTISAYESLKLRGY-----------DVVAVVFEDHGLVNEV-P 296
+LP ++ GD G G + E+ KLR D+ V GL E+ P
Sbjct: 66 KLPSLIKGDNGEYGLVDLDGDLEETKKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLP 125
Query: 297 LMSYLRNRVPVLVL 310
+ YL+ LVL
Sbjct: 126 TLEYLKTTGTRLVL 139
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 29.8 bits (67), Expect = 5.8
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 414 DATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473
+A ++E + G F H+++ +N+ E C + L + +G + + NG A
Sbjct: 282 NAEAELEQGKSSGI----FDHILYNDNLEE----CYKNLKKLLGLDGLA----AVNGVEA 329
Query: 474 IE-IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532
E I L D ++++ G+ T+ K I L + +L G G T G ++ A +
Sbjct: 330 PEGINLPKEHSVSKMDDKIIIQETGEKTSNKLIVLDLSSLNGGAPGRTRG-LDVDAVKSF 388
Query: 533 TGFLQQP 539
+ FL
Sbjct: 389 SDFLNGI 395
>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 29.6 bits (67), Expect = 5.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 262 GGISGTISAYESLKLRGYDVVAVVFEDH 289
GI+G +AY L RGY V VF+ H
Sbjct: 9 AGITGVTTAYA-LAQRGYQV--TVFDRH 33
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2.
Length = 205
Score = 29.1 bits (66), Expect = 6.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 638 VDPLFQRILVKECQNRKIPVI 658
VDP + I +KE IPVI
Sbjct: 144 VDPNKEHIAIKEASKLGIPVI 164
>gnl|CDD|198437 cd10287, prolactin_2, Vertebrate, non-mammalian prolactin 2 (PRL2).
A functionally uncharacterized subfamily of the
growth-hormone-like helical cytokines, which is found in
vertebrata (except for mammals). The protein has been
shown to be expressed in the zebrafish eye and brain,
but not the pituitary gland, and might play a role in
retina development.
Length = 184
Score = 29.1 bits (65), Expect = 6.4
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVS---PHLAAERE-SGGVVGDSKVIETLGKCLRDGL 209
++ EE ++E++ + L AW E +S + +++ + G +K + + LRDG+
Sbjct: 58 KLEREE---LTEVILRLLGAWREPLSHFHQSMGHDKDFNSYSPGKAKQMSDMVHELRDGV 114
Query: 210 ESESESERGKMEILCIVETAGGVASPGPSGSL 241
E +E KM++L ++ + G SP +G
Sbjct: 115 EKVTE----KMQLLGVISNSLGGLSPEDAGPS 142
>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated.
Length = 399
Score = 29.3 bits (67), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
Query: 263 GISGTISAYESLKL------RGYDVVAV 284
G+SG I+AY++L+L G DV V
Sbjct: 12 GVSGGIAAYKALELVRRLRKAGADVRVV 39
>gnl|CDD|224532 COG1617, COG1617, Uncharacterized conserved protein [Function
unknown].
Length = 158
Score = 28.6 bits (64), Expect = 7.4
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGV 232
V K+ LRD + E+E R E L
Sbjct: 104 VDTPKMEGFKCSELRDFVLEEAEVLRITDEELEEAGEEDVP 144
>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type. This
model describes the bacterial, ribosomal, and
chloroplast forms of ribosomal protein S2. TIGR01012
describes the archaeal and cytosolic forms [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 225
Score = 28.8 bits (65), Expect = 8.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 638 VDPLFQRILVKECQNRKIPVI 658
+DP+ ++I V E + IPV+
Sbjct: 162 IDPVKEKIAVAEARKLGIPVV 182
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 29.6 bits (67), Expect = 8.5
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 23/102 (22%)
Query: 621 GALIIEPVVHAAGGMHMVDPLFQRI--LVKE----CQNRKIPVIFDEVFTGFWRLG---- 670
I EPV AGG+ + Q++ V+ C I DEV G+ RLG
Sbjct: 746 AGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVC-------IADEVQVGYGRLGHYFW 798
Query: 671 -VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
E G VPDI K G PL A + + ++
Sbjct: 799 GFEQQ----GVVPDIITMAK-GMGNGHPLGAVITRREIAEAL 835
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 29.1 bits (65), Expect = 8.8
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 262 GGISGTISAYESLKLRGYDVVAVVFEDHGL 291
GGI G +AY L RG DV V E
Sbjct: 12 GGIVGLSAAYY-LAERGADV--TVLEAGEA 38
>gnl|CDD|233006 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase /
phosphopantothenate--cysteine ligase. This model
represents a bifunctional enzyme that catalyzes the
second and third steps (cysteine ligation, EC 6.3.2.5,
and decarboxylation, EC 4.1.1.36) in the biosynthesis of
coenzyme A (CoA) from pantothenate in bacteria. In early
descriptions of this flavoprotein, a ts mutation in one
region of the protein appeared to cause a defect in DNA
metaobolism rather than an increased need for the
pantothenate precursor beta-alanine. This protein was
then called dfp, for DNA/pantothenate metabolism
flavoprotein. The authors responsible for detecting
phosphopantothenate--cysteine ligase activity suggest
renaming this bifunctional protein coaBC for its role in
CoA biosynthesis. This enzyme contains the FMN cofactor,
but no FAD or pyruvoyl group. The amino-terminal region
contains the phosphopantothenoylcysteine decarboxylase
activity [Biosynthesis of cofactors, prosthetic groups,
and carriers, Pantothenate and coenzyme A].
Length = 390
Score = 29.3 bits (66), Expect = 8.9
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
Query: 263 GISGTISAYESLKL------RGYDVVAVVFED 288
G++G I+AY++++L +G +V ++ E
Sbjct: 9 GVTGGIAAYKTVELVRELVRQGAEVKVIMTEA 40
>gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in
cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
(NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
glycosidic linkages on a number of substrates including
cyclomaltodextrins (CDs), pullulan, and starch. These
enzymes hydrolyze CDs and starch to maltose and pullulan
to panose by cleavage of alpha-1,4 glycosidic bonds
whereas alpha-amylases essentially lack activity on CDs
and pullulan. They also catalyze transglycosylation of
oligosaccharides to the C3-, C4- or C6-hydroxyl groups
of various acceptor sugar molecules. Since these
proteins are nearly indistinguishable from each other,
they are referred to as cyclomaltodextrinases (CMDs).
The Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 389
Score = 29.0 bits (66), Expect = 9.3
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 638 VDPL------FQRILVKECQNRKIPVIFDEVF 663
+DP F+ LV+E R I VI D VF
Sbjct: 95 IDPHLGTEEDFKE-LVEEAHKRGIRVILDGVF 125
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 28.8 bits (65), Expect = 9.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 638 VDPLFQRILVKECQNRKIPVI 658
+DP ++I VKE IPV+
Sbjct: 163 IDPRKEKIAVKEANKLGIPVV 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.420
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,272,108
Number of extensions: 3726389
Number of successful extensions: 3456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3333
Number of HSP's successfully gapped: 161
Length of query: 719
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 615
Effective length of database: 6,324,786
Effective search space: 3889743390
Effective search space used: 3889743390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)