Query 005010
Match_columns 719
No_of_seqs 153 out of 172
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 16:35:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 100.0 1.9E-50 4.2E-55 456.6 53.4 525 152-716 3-537 (698)
2 KOG0978 E3 ubiquitin ligase in 99.3 1.3E-06 2.8E-11 101.3 53.8 430 201-675 56-510 (698)
3 KOG0161 Myosin class II heavy 99.2 0.00011 2.5E-09 93.8 65.6 447 201-713 1288-1747(1930)
4 KOG0161 Myosin class II heavy 98.9 0.00081 1.7E-08 86.4 68.6 66 412-477 1244-1310(1930)
5 KOG4674 Uncharacterized conser 98.9 0.00077 1.7E-08 85.3 69.6 88 619-706 1092-1184(1822)
6 PF10174 Cast: RIM-binding pro 98.9 0.00049 1.1E-08 82.1 53.9 207 224-441 49-266 (775)
7 TIGR00606 rad50 rad50. This fa 98.9 0.0012 2.6E-08 84.5 70.6 263 447-713 695-1001(1311)
8 PF10174 Cast: RIM-binding pro 98.9 0.00066 1.4E-08 81.1 58.4 274 205-507 106-421 (775)
9 PRK02224 chromosome segregatio 98.9 0.00091 2E-08 82.3 63.7 136 302-438 260-402 (880)
10 KOG4674 Uncharacterized conser 98.8 0.0023 5.1E-08 81.1 59.4 472 205-706 176-769 (1822)
11 PRK02224 chromosome segregatio 98.8 0.0022 4.7E-08 79.0 63.2 92 302-393 351-444 (880)
12 PF12128 DUF3584: Protein of u 98.7 0.0051 1.1E-07 78.1 59.3 157 353-533 634-791 (1201)
13 TIGR00606 rad50 rad50. This fa 98.6 0.007 1.5E-07 77.7 67.9 279 414-698 793-1091(1311)
14 PF08647 BRE1: BRE1 E3 ubiquit 98.5 6.6E-07 1.4E-11 80.1 10.5 86 631-716 1-86 (96)
15 KOG4643 Uncharacterized coiled 98.5 0.0071 1.5E-07 72.1 50.4 362 302-691 186-601 (1195)
16 TIGR02169 SMC_prok_A chromosom 98.5 0.012 2.7E-07 74.2 68.0 65 642-713 953-1017(1164)
17 COG1196 Smc Chromosome segrega 98.4 0.019 4E-07 73.0 65.6 58 647-704 949-1006(1163)
18 TIGR02168 SMC_prok_B chromosom 98.3 0.032 6.9E-07 70.4 71.0 14 79-92 178-191 (1179)
19 TIGR02168 SMC_prok_B chromosom 98.2 0.043 9.3E-07 69.2 75.3 10 48-57 196-205 (1179)
20 PRK03918 chromosome segregatio 98.2 0.05 1.1E-06 67.1 57.3 34 674-707 672-705 (880)
21 PF07888 CALCOCO1: Calcium bin 98.1 0.037 8E-07 63.5 38.0 17 456-472 366-382 (546)
22 PF07888 CALCOCO1: Calcium bin 98.1 0.04 8.8E-07 63.2 39.5 86 625-710 370-459 (546)
23 PF09755 DUF2046: Uncharacteri 98.1 0.024 5.2E-07 60.6 35.1 171 415-618 108-288 (310)
24 KOG0612 Rho-associated, coiled 98.0 0.03 6.4E-07 68.4 36.8 217 414-650 589-814 (1317)
25 PRK03918 chromosome segregatio 98.0 0.11 2.3E-06 64.2 64.0 29 412-440 404-432 (880)
26 PF05701 WEMBL: Weak chloropla 97.9 0.088 1.9E-06 61.3 51.1 304 355-703 124-428 (522)
27 PF05622 HOOK: HOOK protein; 97.8 2.2E-05 4.7E-10 94.3 6.9 29 32-61 57-86 (713)
28 KOG0977 Nuclear envelope prote 97.8 0.061 1.3E-06 61.8 33.8 63 302-369 150-212 (546)
29 PF00038 Filament: Intermediat 97.8 0.075 1.6E-06 57.4 33.4 76 320-399 17-92 (312)
30 PF12128 DUF3584: Protein of u 97.8 0.26 5.6E-06 63.0 59.6 106 552-659 598-704 (1201)
31 PF01576 Myosin_tail_1: Myosin 97.8 4.9E-06 1.1E-10 101.3 0.0 107 324-440 260-369 (859)
32 KOG0996 Structural maintenance 97.8 0.21 4.5E-06 61.2 59.3 67 203-269 401-467 (1293)
33 KOG4673 Transcription factor T 97.7 0.18 3.9E-06 58.4 43.0 309 299-645 345-663 (961)
34 PF05557 MAD: Mitotic checkpoi 97.7 0.00013 2.9E-09 87.7 9.7 142 317-478 253-395 (722)
35 PRK04778 septation ring format 97.7 0.24 5.2E-06 58.3 43.0 214 205-444 103-341 (569)
36 PF01576 Myosin_tail_1: Myosin 97.6 1.2E-05 2.6E-10 97.9 0.0 121 587-714 570-690 (859)
37 TIGR02169 SMC_prok_A chromosom 97.6 0.47 1E-05 60.1 73.0 49 48-99 194-242 (1164)
38 PRK01156 chromosome segregatio 97.5 0.56 1.2E-05 58.1 61.7 27 450-476 465-491 (895)
39 KOG0976 Rho/Rac1-interacting s 97.5 0.42 9E-06 56.3 45.5 166 203-394 95-275 (1265)
40 PF05701 WEMBL: Weak chloropla 97.4 0.48 1E-05 55.2 49.1 74 306-382 115-193 (522)
41 PF06160 EzrA: Septation ring 97.4 0.54 1.2E-05 55.2 41.8 115 512-639 378-492 (560)
42 COG1196 Smc Chromosome segrega 97.3 1.1 2.4E-05 57.3 63.9 48 589-636 735-782 (1163)
43 KOG0971 Microtubule-associated 97.2 0.97 2.1E-05 54.2 40.7 127 331-477 251-384 (1243)
44 PF00038 Filament: Intermediat 97.2 0.51 1.1E-05 50.9 37.5 51 649-699 257-307 (312)
45 PF05622 HOOK: HOOK protein; 97.1 0.0014 3E-08 78.8 8.9 165 321-494 200-379 (713)
46 PF09726 Macoilin: Transmembra 97.0 0.23 5E-06 59.5 26.5 112 588-708 542-655 (697)
47 KOG0996 Structural maintenance 97.0 1.7 3.7E-05 53.6 53.9 46 302-347 386-431 (1293)
48 PF09730 BicD: Microtubule-ass 96.9 1.5 3.2E-05 52.6 52.6 61 201-265 98-158 (717)
49 COG1340 Uncharacterized archae 96.9 0.7 1.5E-05 49.3 26.3 243 203-456 30-289 (294)
50 PF09730 BicD: Microtubule-ass 96.8 1.9 4.2E-05 51.6 38.5 42 302-343 78-119 (717)
51 PF05557 MAD: Mitotic checkpoi 96.8 0.00091 2E-08 80.6 3.8 39 457-495 260-298 (722)
52 PF14662 CCDC155: Coiled-coil 96.8 0.71 1.5E-05 46.2 23.4 107 212-345 6-112 (193)
53 PF00261 Tropomyosin: Tropomyo 96.7 0.61 1.3E-05 48.7 23.9 163 364-539 4-167 (237)
54 PF09755 DUF2046: Uncharacteri 96.6 1.4 3.1E-05 47.4 27.3 236 303-571 23-278 (310)
55 KOG2129 Uncharacterized conser 96.6 1.3 2.7E-05 49.0 25.0 128 510-642 198-340 (552)
56 PF05483 SCP-1: Synaptonemal c 96.5 2.6 5.5E-05 49.5 63.2 295 412-712 316-645 (786)
57 KOG0977 Nuclear envelope prote 96.5 2.6 5.7E-05 48.8 39.1 28 411-438 104-131 (546)
58 KOG0971 Microtubule-associated 96.4 3.3 7.1E-05 49.9 42.2 84 308-394 319-405 (1243)
59 PF00261 Tropomyosin: Tropomyo 96.3 0.71 1.5E-05 48.2 21.4 139 302-443 94-234 (237)
60 PF15070 GOLGA2L5: Putative go 96.3 3.5 7.7E-05 48.9 37.8 71 558-630 157-227 (617)
61 PF09726 Macoilin: Transmembra 96.3 1.3 2.7E-05 53.3 25.6 101 507-610 546-655 (697)
62 PRK04863 mukB cell division pr 96.3 6.4 0.00014 51.4 43.9 81 620-700 583-663 (1486)
63 PHA02562 46 endonuclease subun 96.2 3.8 8.1E-05 47.9 29.6 111 151-271 167-277 (562)
64 PRK11637 AmiB activator; Provi 96.1 1.6 3.6E-05 49.5 24.4 29 315-343 164-192 (428)
65 KOG0963 Transcription factor/C 96.0 4.4 9.5E-05 47.2 37.4 197 358-572 193-401 (629)
66 KOG0933 Structural maintenance 95.8 6.9 0.00015 47.9 50.4 224 239-475 255-500 (1174)
67 PF04849 HAP1_N: HAP1 N-termin 95.8 3.2 6.9E-05 44.8 23.1 144 354-526 160-303 (306)
68 PHA02562 46 endonuclease subun 95.7 5.7 0.00012 46.4 32.6 70 447-540 213-282 (562)
69 KOG0976 Rho/Rac1-interacting s 95.7 6.5 0.00014 46.9 46.4 357 322-712 107-506 (1265)
70 PRK04778 septation ring format 95.7 6.3 0.00014 46.5 40.1 70 302-391 66-135 (569)
71 PF14662 CCDC155: Coiled-coil 95.6 2.9 6.2E-05 42.0 24.5 101 603-713 86-189 (193)
72 PF13514 AAA_27: AAA domain 95.5 11 0.00024 48.1 64.7 84 355-445 551-650 (1111)
73 KOG0964 Structural maintenance 95.1 12 0.00025 45.9 36.1 278 308-661 188-467 (1200)
74 KOG0963 Transcription factor/C 95.0 9.5 0.00021 44.6 34.5 127 586-715 191-343 (629)
75 PRK09039 hypothetical protein; 94.9 2.3 5E-05 46.9 19.7 118 205-345 44-161 (343)
76 COG1579 Zn-ribbon protein, pos 94.8 5.2 0.00011 41.8 20.6 117 208-345 18-134 (239)
77 COG1340 Uncharacterized archae 94.8 7.1 0.00015 41.9 28.9 192 417-659 31-226 (294)
78 COG1579 Zn-ribbon protein, pos 94.7 1.6 3.5E-05 45.5 16.5 88 300-387 31-122 (239)
79 KOG0250 DNA repair protein RAD 94.6 16 0.00036 45.3 55.3 146 302-475 318-464 (1074)
80 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.5 2.8 6E-05 39.8 16.5 60 595-657 70-129 (132)
81 TIGR03185 DNA_S_dndD DNA sulfu 94.4 15 0.00032 44.1 35.3 79 163-249 171-251 (650)
82 PF06160 EzrA: Septation ring 94.1 16 0.00035 43.1 56.5 272 355-646 253-547 (560)
83 TIGR03185 DNA_S_dndD DNA sulfu 94.1 18 0.00038 43.5 39.4 32 413-444 262-293 (650)
84 PF05483 SCP-1: Synaptonemal c 93.9 17 0.00037 42.9 53.9 165 413-595 534-704 (786)
85 PF15294 Leu_zip: Leucine zipp 93.9 10 0.00022 40.5 20.7 73 302-377 199-276 (278)
86 COG3883 Uncharacterized protei 93.9 8.3 0.00018 40.9 19.8 70 201-270 39-109 (265)
87 PF05667 DUF812: Protein of un 93.8 18 0.0004 42.9 31.9 131 315-476 322-452 (594)
88 PF09787 Golgin_A5: Golgin sub 93.7 17 0.00038 42.3 27.1 22 589-610 360-381 (511)
89 KOG4643 Uncharacterized coiled 93.5 25 0.00054 43.4 55.4 67 324-390 267-337 (1195)
90 TIGR03007 pepcterm_ChnLen poly 93.4 15 0.00032 42.4 23.2 30 242-271 161-190 (498)
91 PF15070 GOLGA2L5: Putative go 93.3 22 0.00049 42.3 44.9 48 625-672 441-488 (617)
92 PRK09039 hypothetical protein; 93.3 5.7 0.00012 43.9 18.5 116 411-535 79-195 (343)
93 TIGR01005 eps_transp_fam exopo 93.2 22 0.00048 43.4 25.3 33 240-272 192-224 (754)
94 KOG0995 Centromere-associated 92.6 25 0.00054 40.9 39.6 332 49-475 232-567 (581)
95 KOG0018 Structural maintenance 92.6 35 0.00075 42.5 26.9 196 419-649 651-847 (1141)
96 PF09728 Taxilin: Myosin-like 92.5 19 0.00041 39.3 33.9 105 592-696 203-307 (309)
97 PF15619 Lebercilin: Ciliary p 92.3 14 0.00031 37.4 24.2 89 508-610 63-151 (194)
98 PF13851 GAS: Growth-arrest sp 92.1 15 0.00033 37.5 18.4 129 303-440 30-170 (201)
99 KOG4593 Mitotic checkpoint pro 92.1 31 0.00068 41.0 52.6 50 447-496 268-317 (716)
100 PF13851 GAS: Growth-arrest sp 92.0 16 0.00034 37.3 19.9 35 411-445 105-139 (201)
101 PF04849 HAP1_N: HAP1 N-termin 92.0 21 0.00045 38.7 23.8 69 201-269 228-296 (306)
102 PRK01156 chromosome segregatio 92.0 41 0.00088 41.9 60.9 27 677-703 690-716 (895)
103 KOG0946 ER-Golgi vesicle-tethe 91.8 37 0.00079 41.1 29.8 65 645-711 883-947 (970)
104 PF09789 DUF2353: Uncharacteri 91.6 24 0.00052 38.6 24.1 90 241-346 22-111 (319)
105 COG4942 Membrane-bound metallo 91.2 30 0.00066 39.1 28.9 62 413-476 192-253 (420)
106 KOG0946 ER-Golgi vesicle-tethe 91.0 44 0.00095 40.5 27.7 46 302-347 652-697 (970)
107 KOG4807 F-actin binding protei 91.0 29 0.00063 38.4 26.1 259 43-371 296-564 (593)
108 TIGR02680 conserved hypothetic 90.9 64 0.0014 42.3 27.9 126 241-387 748-877 (1353)
109 PF13870 DUF4201: Domain of un 90.6 5.5 0.00012 39.6 13.3 112 595-712 3-114 (177)
110 PRK04863 mukB cell division pr 90.4 73 0.0016 42.0 61.0 43 303-345 438-480 (1486)
111 PF08614 ATG16: Autophagy prot 90.0 2.5 5.5E-05 42.7 10.4 119 201-342 68-186 (194)
112 PF13863 DUF4200: Domain of un 89.9 8 0.00017 35.9 13.1 105 611-718 6-110 (126)
113 PF00769 ERM: Ezrin/radixin/mo 89.7 2.3 5.1E-05 44.7 10.2 66 205-270 66-131 (246)
114 PRK10929 putative mechanosensi 89.3 75 0.0016 40.6 26.1 99 591-695 215-313 (1109)
115 PF08317 Spc7: Spc7 kinetochor 88.7 41 0.00089 36.8 25.2 64 478-541 209-272 (325)
116 KOG0933 Structural maintenance 88.6 73 0.0016 39.6 59.7 98 321-444 684-786 (1174)
117 PF10481 CENP-F_N: Cenp-F N-te 88.5 7.5 0.00016 41.0 12.5 137 412-554 59-212 (307)
118 KOG0612 Rho-associated, coiled 88.4 83 0.0018 39.9 42.2 19 455-473 675-693 (1317)
119 TIGR03017 EpsF chain length de 88.3 50 0.0011 37.4 26.0 32 241-272 170-201 (444)
120 TIGR02680 conserved hypothetic 88.0 1E+02 0.0022 40.5 30.0 29 410-438 746-774 (1353)
121 PF14915 CCDC144C: CCDC144C pr 87.8 43 0.00094 36.0 33.8 111 447-610 130-240 (305)
122 PF10481 CENP-F_N: Cenp-F N-te 87.2 39 0.00084 35.9 16.7 62 203-271 63-124 (307)
123 PF15294 Leu_zip: Leucine zipp 87.1 46 0.001 35.6 23.9 145 296-470 128-276 (278)
124 KOG2129 Uncharacterized conser 87.1 57 0.0012 36.6 24.8 42 420-473 179-220 (552)
125 PLN03188 kinesin-12 family pro 86.8 1.1E+02 0.0023 39.4 26.1 111 366-494 1070-1189(1320)
126 KOG2991 Splicing regulator [RN 86.5 46 0.001 35.0 19.5 176 307-494 118-308 (330)
127 PF06818 Fez1: Fez1; InterPro 86.4 41 0.00089 34.3 16.3 147 560-715 9-176 (202)
128 PF15619 Lebercilin: Ciliary p 86.3 41 0.00088 34.2 22.1 32 314-345 5-36 (194)
129 PF08614 ATG16: Autophagy prot 86.0 7.4 0.00016 39.3 10.9 63 203-265 119-181 (194)
130 PF10473 CENP-F_leu_zip: Leuci 85.9 34 0.00075 32.9 15.9 69 413-487 66-135 (140)
131 PF06548 Kinesin-related: Kine 85.8 70 0.0015 36.4 22.0 222 329-576 223-488 (488)
132 PF05911 DUF869: Plant protein 84.6 1.1E+02 0.0024 37.6 31.6 144 377-541 19-162 (769)
133 PF11559 ADIP: Afadin- and alp 84.6 32 0.00069 33.1 14.2 83 302-384 40-124 (151)
134 COG0419 SbcC ATPase involved i 84.6 1.2E+02 0.0026 38.0 62.5 29 359-387 415-443 (908)
135 PF15397 DUF4618: Domain of un 84.3 61 0.0013 34.4 23.2 66 205-270 43-109 (258)
136 TIGR03007 pepcterm_ChnLen poly 84.2 87 0.0019 36.1 24.5 207 205-440 166-382 (498)
137 PF09738 DUF2051: Double stran 83.8 28 0.0006 37.9 14.5 22 323-344 221-242 (302)
138 PRK11281 hypothetical protein; 83.6 1.4E+02 0.0031 38.2 26.3 55 642-696 280-334 (1113)
139 PF13870 DUF4201: Domain of un 83.6 49 0.0011 32.8 18.7 33 412-444 5-37 (177)
140 PF14197 Cep57_CLD_2: Centroso 83.6 14 0.0003 31.2 9.6 65 205-269 3-67 (69)
141 PLN02939 transferase, transfer 83.5 1.3E+02 0.0029 37.7 22.8 168 320-494 155-340 (977)
142 KOG1853 LIS1-interacting prote 83.4 63 0.0014 33.9 21.0 34 461-494 147-180 (333)
143 PF10473 CENP-F_leu_zip: Leuci 83.2 45 0.00098 32.1 18.1 45 303-347 55-99 (140)
144 PF09486 HrpB7: Bacterial type 83.1 31 0.00068 33.9 13.2 118 151-270 15-135 (158)
145 COG4372 Uncharacterized protei 82.4 88 0.0019 34.9 28.9 67 411-479 128-197 (499)
146 COG4942 Membrane-bound metallo 82.3 96 0.0021 35.2 28.9 204 208-438 60-263 (420)
147 PF05010 TACC: Transforming ac 82.1 65 0.0014 33.1 23.2 27 447-473 37-63 (207)
148 PF12325 TMF_TATA_bd: TATA ele 81.8 29 0.00064 32.5 12.0 43 353-395 15-57 (120)
149 PF10267 Tmemb_cc2: Predicted 81.7 31 0.00067 38.9 14.3 101 320-467 218-318 (395)
150 PF08647 BRE1: BRE1 E3 ubiquit 81.5 12 0.00026 33.5 9.1 68 509-598 27-94 (96)
151 PF10186 Atg14: UV radiation r 81.4 56 0.0012 34.6 16.0 64 412-475 19-84 (302)
152 PF10498 IFT57: Intra-flagella 80.9 68 0.0015 35.8 16.6 69 502-570 283-351 (359)
153 KOG4360 Uncharacterized coiled 80.9 52 0.0011 37.8 15.5 22 583-604 281-302 (596)
154 COG2433 Uncharacterized conser 80.7 18 0.00038 42.4 12.1 90 510-625 419-508 (652)
155 PF11559 ADIP: Afadin- and alp 79.7 56 0.0012 31.4 13.9 105 158-263 31-136 (151)
156 KOG0018 Structural maintenance 79.3 1.8E+02 0.004 36.6 32.3 33 412-444 323-355 (1141)
157 KOG4360 Uncharacterized coiled 79.2 1.3E+02 0.0028 34.8 19.2 180 500-713 98-285 (596)
158 PF15397 DUF4618: Domain of un 78.3 98 0.0021 32.9 22.0 85 455-539 57-147 (258)
159 KOG4593 Mitotic checkpoint pro 78.3 1.6E+02 0.0035 35.3 58.9 143 550-702 463-620 (716)
160 PF12718 Tropomyosin_1: Tropom 77.8 69 0.0015 30.9 17.8 112 591-713 28-139 (143)
161 KOG4807 F-actin binding protei 77.3 1.3E+02 0.0027 33.7 23.5 224 353-642 290-535 (593)
162 PF06005 DUF904: Protein of un 76.3 38 0.00082 28.9 10.0 60 321-392 4-63 (72)
163 PF07111 HCR: Alpha helical co 76.3 1.8E+02 0.004 35.0 46.5 410 154-656 200-666 (739)
164 KOG1853 LIS1-interacting prote 76.1 1.1E+02 0.0023 32.3 20.0 103 354-473 6-110 (333)
165 PRK10884 SH3 domain-containing 75.9 38 0.00082 34.8 11.9 20 591-610 93-112 (206)
166 KOG0994 Extracellular matrix g 75.7 2.4E+02 0.0052 36.0 46.5 58 510-571 1508-1566(1758)
167 KOG0982 Centrosomal protein Nu 75.3 1.5E+02 0.0033 33.5 27.2 33 625-666 448-480 (502)
168 PF15066 CAGE1: Cancer-associa 75.1 1.6E+02 0.0035 33.7 24.4 44 303-346 313-356 (527)
169 PF09738 DUF2051: Double stran 74.6 87 0.0019 34.1 14.7 85 302-391 79-163 (302)
170 COG4717 Uncharacterized conser 73.5 2.4E+02 0.0051 34.9 31.3 48 49-96 554-601 (984)
171 KOG3850 Predicted membrane pro 73.3 1.6E+02 0.0035 32.9 26.5 108 316-470 262-369 (455)
172 PF04156 IncA: IncA protein; 73.2 1E+02 0.0022 30.6 15.3 62 592-653 89-150 (191)
173 PF12325 TMF_TATA_bd: TATA ele 73.2 83 0.0018 29.5 12.9 86 593-678 25-113 (120)
174 KOG0250 DNA repair protein RAD 72.9 2.7E+02 0.0058 35.3 57.0 38 50-87 219-256 (1074)
175 KOG0999 Microtubule-associated 72.1 2E+02 0.0044 33.6 39.4 191 242-438 43-254 (772)
176 KOG1265 Phospholipase C [Lipid 70.6 2.8E+02 0.006 34.5 19.7 45 423-468 1109-1153(1189)
177 KOG0995 Centromere-associated 70.5 2.2E+02 0.0049 33.4 46.0 61 322-391 302-362 (581)
178 PF07106 TBPIP: Tat binding pr 70.5 24 0.00052 34.7 8.8 60 412-475 78-137 (169)
179 PF15066 CAGE1: Cancer-associa 70.2 2.1E+02 0.0045 32.9 25.2 189 470-714 319-515 (527)
180 PF12329 TMF_DNA_bd: TATA elem 70.0 27 0.00059 29.8 7.7 63 651-713 2-71 (74)
181 PF10205 KLRAQ: Predicted coil 69.3 55 0.0012 29.8 9.8 66 553-621 3-70 (102)
182 PF04111 APG6: Autophagy prote 69.1 79 0.0017 34.5 13.1 24 679-702 110-133 (314)
183 PF04111 APG6: Autophagy prote 68.8 73 0.0016 34.8 12.8 69 642-710 66-134 (314)
184 PF02403 Seryl_tRNA_N: Seryl-t 68.5 61 0.0013 29.2 10.4 64 205-268 34-100 (108)
185 TIGR00634 recN DNA repair prot 67.8 2.6E+02 0.0056 33.1 24.4 41 354-394 161-201 (563)
186 PF04156 IncA: IncA protein; 67.8 1.3E+02 0.0029 29.8 14.4 70 307-381 81-150 (191)
187 PF12718 Tropomyosin_1: Tropom 67.4 1.2E+02 0.0026 29.2 17.6 17 512-528 34-50 (143)
188 COG4026 Uncharacterized protei 67.1 96 0.0021 32.1 12.0 118 324-444 76-208 (290)
189 COG3074 Uncharacterized protei 66.7 40 0.00086 28.4 7.6 61 416-476 7-68 (79)
190 PRK11281 hypothetical protein; 66.4 3.8E+02 0.0083 34.5 42.2 129 241-377 79-215 (1113)
191 PF09787 Golgin_A5: Golgin sub 66.4 2.6E+02 0.0057 32.6 34.4 75 401-475 223-302 (511)
192 PF09789 DUF2353: Uncharacteri 66.1 2.1E+02 0.0045 31.4 23.6 47 225-271 69-115 (319)
193 PF08172 CASP_C: CASP C termin 65.4 69 0.0015 33.9 11.3 29 241-269 5-33 (248)
194 PF10146 zf-C4H2: Zinc finger- 65.2 71 0.0015 33.4 11.2 23 369-391 33-55 (230)
195 PF08317 Spc7: Spc7 kinetochor 65.0 2.2E+02 0.0047 31.2 28.9 85 241-344 169-253 (325)
196 PRK10884 SH3 domain-containing 64.9 47 0.001 34.1 9.7 65 205-269 98-166 (206)
197 TIGR01005 eps_transp_fam exopo 64.9 3.3E+02 0.0072 33.3 23.6 32 240-271 235-266 (754)
198 PF14197 Cep57_CLD_2: Centroso 64.7 69 0.0015 27.1 9.0 13 559-571 3-15 (69)
199 cd07666 BAR_SNX7 The Bin/Amphi 64.6 1.9E+02 0.0042 30.5 14.5 50 411-476 161-210 (243)
200 KOG1003 Actin filament-coating 64.5 1.7E+02 0.0037 29.8 24.2 67 412-480 10-79 (205)
201 COG2433 Uncharacterized conser 64.2 51 0.0011 38.8 10.7 76 358-440 433-508 (652)
202 TIGR00634 recN DNA repair prot 63.8 3E+02 0.0066 32.5 21.7 70 356-439 303-372 (563)
203 PRK10361 DNA recombination pro 63.7 2.9E+02 0.0062 32.1 18.3 75 419-493 98-180 (475)
204 KOG0288 WD40 repeat protein Ti 63.6 2.4E+02 0.0053 31.9 15.2 62 596-657 11-72 (459)
205 PF09728 Taxilin: Myosin-like 63.0 2.3E+02 0.0051 30.9 33.0 20 521-540 203-222 (309)
206 PF07926 TPR_MLP1_2: TPR/MLP1/ 62.6 1.4E+02 0.003 28.2 15.1 22 455-476 92-113 (132)
207 COG4477 EzrA Negative regulato 62.5 3.1E+02 0.0067 32.1 47.6 166 207-390 118-296 (570)
208 KOG0980 Actin-binding protein 62.1 3.9E+02 0.0085 33.2 31.9 23 325-347 330-352 (980)
209 PF07106 TBPIP: Tat binding pr 61.3 1.3E+02 0.0028 29.6 11.9 93 201-320 73-165 (169)
210 TIGR01843 type_I_hlyD type I s 61.0 2.7E+02 0.0058 30.9 20.4 24 414-437 247-270 (423)
211 KOG0994 Extracellular matrix g 60.8 4.7E+02 0.01 33.6 54.5 113 152-269 1172-1294(1758)
212 TIGR03752 conj_TIGR03752 integ 60.5 88 0.0019 35.9 11.6 40 302-348 61-100 (472)
213 COG3883 Uncharacterized protei 60.2 2.4E+02 0.0052 30.1 24.7 43 347-389 120-162 (265)
214 PF15254 CCDC14: Coiled-coil d 60.1 4E+02 0.0087 32.6 24.2 75 415-496 389-466 (861)
215 PRK10869 recombination and rep 59.0 3.7E+02 0.0079 31.8 24.6 41 354-394 157-197 (553)
216 TIGR02977 phageshock_pspA phag 57.3 2.3E+02 0.0051 29.1 13.7 87 549-635 47-143 (219)
217 PF04728 LPP: Lipoprotein leuc 56.6 74 0.0016 25.9 7.4 28 241-268 23-50 (56)
218 PF05266 DUF724: Protein of un 56.1 2.2E+02 0.0048 28.8 12.6 57 594-650 127-183 (190)
219 PF10498 IFT57: Intra-flagella 55.5 3.4E+02 0.0073 30.4 16.8 56 413-468 294-349 (359)
220 PRK15422 septal ring assembly 55.1 92 0.002 27.0 8.1 62 415-476 6-68 (79)
221 PF04201 TPD52: Tumour protein 55.0 87 0.0019 30.9 9.1 77 591-671 36-127 (162)
222 PF05667 DUF812: Protein of un 53.0 4.7E+02 0.01 31.3 33.8 30 447-476 394-423 (594)
223 KOG0804 Cytoplasmic Zn-finger 52.8 3.4E+02 0.0074 31.1 14.2 99 321-426 347-448 (493)
224 KOG1029 Endocytic adaptor prot 52.8 5.2E+02 0.011 31.7 26.4 67 594-660 447-513 (1118)
225 PF10458 Val_tRNA-synt_C: Valy 52.2 1.1E+02 0.0024 25.3 8.2 34 321-354 4-37 (66)
226 PF15186 TEX13: Testis-express 51.9 2.1E+02 0.0044 27.9 10.8 61 366-439 90-150 (152)
227 PRK15422 septal ring assembly 51.2 1.7E+02 0.0036 25.5 9.1 56 591-660 11-66 (79)
228 KOG0964 Structural maintenance 50.1 6.3E+02 0.014 31.9 59.1 67 412-482 747-813 (1200)
229 PF08826 DMPK_coil: DMPK coile 49.9 1E+02 0.0022 25.5 7.3 44 211-261 15-58 (61)
230 PF03962 Mnd1: Mnd1 family; I 49.6 2.9E+02 0.0063 27.9 12.3 83 412-494 68-151 (188)
231 PF10146 zf-C4H2: Zinc finger- 49.3 3.3E+02 0.0072 28.5 13.7 68 630-697 36-103 (230)
232 TIGR03017 EpsF chain length de 49.2 4.4E+02 0.0094 29.8 22.9 113 512-649 253-365 (444)
233 PF05615 THOC7: Tho complex su 48.0 2.5E+02 0.0054 26.6 11.9 105 353-460 15-128 (139)
234 PF10168 Nup88: Nuclear pore c 47.9 6.1E+02 0.013 31.1 18.2 25 413-437 646-670 (717)
235 PF02183 HALZ: Homeobox associ 47.4 72 0.0016 24.7 5.8 34 355-388 6-39 (45)
236 COG0216 PrfA Protein chain rel 45.9 2.5E+02 0.0053 31.1 11.6 49 328-376 7-55 (363)
237 PF10205 KLRAQ: Predicted coil 45.9 2.4E+02 0.0052 25.8 11.2 40 234-273 32-71 (102)
238 PRK11519 tyrosine kinase; Prov 45.2 6.6E+02 0.014 30.7 17.3 35 237-271 262-296 (719)
239 PF11932 DUF3450: Protein of u 45.2 3.8E+02 0.0083 28.0 16.2 70 303-391 24-93 (251)
240 PF06785 UPF0242: Uncharacteri 45.1 4.6E+02 0.01 28.9 16.9 25 449-473 129-153 (401)
241 PF15290 Syntaphilin: Golgi-lo 44.9 3.6E+02 0.0079 29.0 12.3 78 240-376 87-164 (305)
242 KOG3647 Predicted coiled-coil 44.6 3.4E+02 0.0073 29.0 11.9 91 550-659 101-191 (338)
243 PRK10722 hypothetical protein; 44.6 1.8E+02 0.004 30.5 10.0 69 207-275 138-210 (247)
244 PF02403 Seryl_tRNA_N: Seryl-t 44.5 2.3E+02 0.0049 25.5 9.8 35 361-395 29-63 (108)
245 PF14915 CCDC144C: CCDC144C pr 44.3 4.5E+02 0.0098 28.6 32.4 116 307-439 123-240 (305)
246 PF04859 DUF641: Plant protein 43.8 3E+02 0.0065 26.3 10.8 43 227-269 79-121 (131)
247 COG5185 HEC1 Protein involved 43.6 5.7E+02 0.012 29.5 30.8 45 661-705 555-599 (622)
248 KOG0980 Actin-binding protein 43.5 7.5E+02 0.016 30.9 32.5 28 411-438 422-449 (980)
249 PF08172 CASP_C: CASP C termin 42.9 4.3E+02 0.0094 27.9 15.0 28 237-264 8-35 (248)
250 COG4026 Uncharacterized protei 42.8 1.5E+02 0.0032 30.8 8.8 42 227-268 162-203 (290)
251 PRK09841 cryptic autophosphory 42.0 7.3E+02 0.016 30.3 16.8 112 365-490 271-382 (726)
252 KOG1962 B-cell receptor-associ 41.0 2.4E+02 0.0052 29.2 10.2 65 597-665 133-197 (216)
253 PF10805 DUF2730: Protein of u 40.6 2.9E+02 0.0062 25.2 10.1 51 591-655 49-101 (106)
254 PF06785 UPF0242: Uncharacteri 40.6 5.4E+02 0.012 28.4 17.1 118 317-472 95-212 (401)
255 COG4477 EzrA Negative regulato 39.8 6.9E+02 0.015 29.4 35.8 40 352-391 373-412 (570)
256 KOG1029 Endocytic adaptor prot 39.5 8.2E+02 0.018 30.2 29.2 80 312-391 435-516 (1118)
257 smart00787 Spc7 Spc7 kinetocho 38.8 5.6E+02 0.012 28.0 24.7 39 503-541 229-267 (312)
258 TIGR02449 conserved hypothetic 38.7 2.4E+02 0.0051 23.7 8.3 13 247-259 40-52 (65)
259 PF10186 Atg14: UV radiation r 38.7 4.9E+02 0.011 27.3 16.4 30 358-387 17-46 (302)
260 PF07889 DUF1664: Protein of u 38.6 2.4E+02 0.0052 26.7 9.1 18 449-466 105-122 (126)
261 PF12795 MscS_porin: Mechanose 37.6 4.9E+02 0.011 27.0 22.2 129 241-377 37-173 (240)
262 PF10805 DUF2730: Protein of u 37.4 2.6E+02 0.0057 25.4 9.0 63 207-269 35-99 (106)
263 PRK10803 tol-pal system protei 37.2 2.3E+02 0.005 30.1 9.9 29 237-265 63-91 (263)
264 PF03962 Mnd1: Mnd1 family; I 37.1 4.5E+02 0.0098 26.5 12.0 44 418-477 108-151 (188)
265 PRK09841 cryptic autophosphory 37.1 8.6E+02 0.019 29.7 19.6 36 236-271 261-296 (726)
266 PF05911 DUF869: Plant protein 37.0 9E+02 0.02 29.9 53.0 104 592-695 611-714 (769)
267 PF15035 Rootletin: Ciliary ro 36.9 4.5E+02 0.0098 26.4 18.1 31 313-343 80-110 (182)
268 KOG4010 Coiled-coil protein TP 36.9 1.4E+02 0.003 30.1 7.4 54 590-649 50-104 (208)
269 PF15188 CCDC-167: Coiled-coil 36.8 2.3E+02 0.0051 25.0 8.0 65 241-332 4-68 (85)
270 PRK13729 conjugal transfer pil 36.8 2E+02 0.0043 33.3 9.7 11 241-251 110-120 (475)
271 PF12329 TMF_DNA_bd: TATA elem 36.6 2.7E+02 0.0058 23.7 9.8 61 591-651 5-65 (74)
272 PLN02939 transferase, transfer 36.5 1E+03 0.022 30.3 26.5 66 413-485 194-264 (977)
273 PF10168 Nup88: Nuclear pore c 35.7 9.1E+02 0.02 29.6 19.5 43 227-269 578-620 (717)
274 PRK10869 recombination and rep 34.1 8.5E+02 0.018 28.8 18.5 27 412-438 340-366 (553)
275 PRK13729 conjugal transfer pil 34.0 1.2E+02 0.0026 35.0 7.3 47 589-635 74-120 (475)
276 PF08826 DMPK_coil: DMPK coile 33.9 2.7E+02 0.0059 23.0 9.2 43 205-254 16-58 (61)
277 PF02183 HALZ: Homeobox associ 33.6 1.7E+02 0.0036 22.6 5.9 9 241-249 32-40 (45)
278 TIGR02231 conserved hypothetic 33.3 2.5E+02 0.0054 32.8 10.3 35 307-341 138-172 (525)
279 KOG4005 Transcription factor X 32.5 1.1E+02 0.0023 32.0 6.0 29 205-233 102-130 (292)
280 PF05769 DUF837: Protein of un 32.1 5.4E+02 0.012 25.9 17.4 23 588-610 157-179 (181)
281 KOG1962 B-cell receptor-associ 32.0 4.2E+02 0.0091 27.5 10.3 15 558-572 131-145 (216)
282 KOG4196 bZIP transcription fac 31.8 4.6E+02 0.01 25.0 9.7 69 206-275 46-114 (135)
283 TIGR01000 bacteriocin_acc bact 31.8 8.2E+02 0.018 27.9 20.7 22 417-438 288-309 (457)
284 PLN02678 seryl-tRNA synthetase 31.4 6.6E+02 0.014 29.0 12.9 64 208-271 41-107 (448)
285 PF08700 Vps51: Vps51/Vps67; 31.2 2.5E+02 0.0055 23.9 7.6 47 448-494 20-74 (87)
286 PF15456 Uds1: Up-regulated Du 31.1 4.6E+02 0.0099 24.8 9.7 68 201-269 23-108 (124)
287 PF09403 FadA: Adhesion protei 31.1 2.7E+02 0.0057 26.5 8.1 42 302-343 29-70 (126)
288 PF09744 Jnk-SapK_ap_N: JNK_SA 31.0 2.3E+02 0.0051 27.9 8.0 66 202-267 84-149 (158)
289 PF04728 LPP: Lipoprotein leuc 31.0 2.9E+02 0.0064 22.5 7.7 45 209-253 5-49 (56)
290 COG2900 SlyX Uncharacterized p 30.9 2.3E+02 0.0049 24.3 6.7 53 597-649 7-59 (72)
291 PF11932 DUF3450: Protein of u 30.8 6.4E+02 0.014 26.3 12.8 23 617-639 75-97 (251)
292 TIGR02894 DNA_bind_RsfA transc 30.7 2.6E+02 0.0057 27.6 8.1 50 205-268 102-151 (161)
293 KOG4687 Uncharacterized coiled 30.5 7.1E+02 0.015 26.7 23.2 184 206-438 8-192 (389)
294 PF03915 AIP3: Actin interacti 30.3 8.6E+02 0.019 27.9 13.4 60 326-387 211-272 (424)
295 KOG3433 Protein involved in me 30.2 2E+02 0.0042 29.1 7.2 65 412-476 80-145 (203)
296 COG0172 SerS Seryl-tRNA synthe 30.0 6.1E+02 0.013 29.1 12.1 67 205-271 34-104 (429)
297 KOG0249 LAR-interacting protei 29.6 1.1E+03 0.024 28.8 22.1 93 366-470 33-128 (916)
298 KOG1772 Vacuolar H+-ATPase V1 29.6 3.7E+02 0.0081 24.7 8.3 47 548-609 7-53 (108)
299 KOG4460 Nuclear pore complex, 29.2 1E+03 0.022 28.2 16.2 153 44-237 585-739 (741)
300 PF09304 Cortex-I_coil: Cortex 29.2 4.6E+02 0.01 24.2 10.2 58 206-263 15-72 (107)
301 PF09304 Cortex-I_coil: Cortex 29.0 4.7E+02 0.01 24.2 11.7 22 417-438 83-104 (107)
302 PF10393 Matrilin_ccoil: Trime 28.9 1.8E+02 0.004 22.8 5.4 32 41-75 13-46 (47)
303 TIGR03545 conserved hypothetic 28.0 3.7E+02 0.0081 31.9 10.4 90 301-394 165-256 (555)
304 PF07200 Mod_r: Modifier of ru 28.0 5.3E+02 0.012 24.5 12.0 37 348-384 21-57 (150)
305 KOG4438 Centromere-associated 27.7 9.6E+02 0.021 27.4 29.4 133 214-346 145-287 (446)
306 PF07412 Geminin: Geminin; In 27.7 2.6E+02 0.0056 28.6 7.8 33 312-344 109-141 (200)
307 PF05529 Bap31: B-cell recepto 27.6 3.7E+02 0.0079 26.9 9.1 33 236-268 155-187 (192)
308 PF12795 MscS_porin: Mechanose 27.6 7.1E+02 0.015 25.8 21.0 61 326-391 155-215 (240)
309 COG0419 SbcC ATPase involved i 27.4 1.3E+03 0.029 28.9 62.5 22 518-539 557-578 (908)
310 PRK10929 putative mechanosensi 27.2 1.5E+03 0.032 29.4 44.8 29 241-269 64-92 (1109)
311 TIGR01000 bacteriocin_acc bact 27.2 9.7E+02 0.021 27.3 21.3 18 418-435 102-119 (457)
312 PF07889 DUF1664: Protein of u 27.2 5.5E+02 0.012 24.4 11.9 55 214-268 68-122 (126)
313 KOG4687 Uncharacterized coiled 27.1 7.7E+02 0.017 26.5 11.3 88 588-675 20-111 (389)
314 KOG3647 Predicted coiled-coil 26.9 2.2E+02 0.0048 30.4 7.3 53 219-271 110-162 (338)
315 smart00787 Spc7 Spc7 kinetocho 26.8 8.7E+02 0.019 26.6 23.0 57 207-263 204-260 (312)
316 PF10372 YojJ: Bacterial membr 26.7 85 0.0018 26.7 3.5 28 624-651 33-60 (70)
317 PF04012 PspA_IM30: PspA/IM30 26.6 6.9E+02 0.015 25.4 17.5 71 549-619 46-119 (221)
318 PF10458 Val_tRNA-synt_C: Valy 26.6 2.9E+02 0.0064 22.7 6.8 59 412-472 3-64 (66)
319 PF07798 DUF1640: Protein of u 26.4 6.4E+02 0.014 24.9 18.1 18 456-473 140-157 (177)
320 PF13623 SurA_N_2: SurA N-term 26.3 1.7E+02 0.0036 28.4 6.0 29 72-100 69-97 (145)
321 PF10234 Cluap1: Clusterin-ass 25.9 2.4E+02 0.0052 30.2 7.6 45 225-269 173-217 (267)
322 PF06409 NPIP: Nuclear pore co 25.9 7.2E+02 0.016 26.1 10.6 80 554-651 91-173 (265)
323 PF11802 CENP-K: Centromere-as 25.8 8.5E+02 0.018 26.1 13.6 60 416-475 88-152 (268)
324 PRK03947 prefoldin subunit alp 25.6 5.7E+02 0.012 24.1 11.4 11 311-321 94-104 (140)
325 PF15254 CCDC14: Coiled-coil d 25.5 1.3E+03 0.029 28.4 18.9 37 629-665 451-487 (861)
326 PF05384 DegS: Sensor protein 25.4 6.6E+02 0.014 24.8 16.8 121 513-647 27-154 (159)
327 PRK14011 prefoldin subunit alp 25.1 95 0.0021 30.1 4.1 121 48-189 6-126 (144)
328 PRK10246 exonuclease subunit S 25.0 1.5E+03 0.034 28.9 52.3 20 49-68 188-207 (1047)
329 PRK11519 tyrosine kinase; Prov 25.0 1.3E+03 0.029 28.1 16.8 113 362-489 268-381 (719)
330 PRK03947 prefoldin subunit alp 24.9 5.9E+02 0.013 24.0 10.8 33 410-442 105-137 (140)
331 PF05103 DivIVA: DivIVA protei 24.8 74 0.0016 29.5 3.3 25 322-346 33-57 (131)
332 TIGR02449 conserved hypothetic 24.6 4.1E+02 0.0089 22.3 7.1 27 225-251 32-58 (65)
333 cd07661 BAR_ICA69 The Bin/Amph 24.5 7.8E+02 0.017 25.3 13.4 34 62-95 2-35 (204)
334 PF14723 SSFA2_C: Sperm-specif 24.3 6.3E+02 0.014 25.3 9.5 68 313-394 97-164 (179)
335 PRK02119 hypothetical protein; 24.2 1.7E+02 0.0036 25.0 4.9 40 60-99 3-42 (73)
336 COG4985 ABC-type phosphate tra 23.9 8.2E+02 0.018 25.7 10.5 99 138-260 145-246 (289)
337 PF05008 V-SNARE: Vesicle tran 23.8 4.4E+02 0.0095 22.1 8.2 44 430-473 6-51 (79)
338 PF10234 Cluap1: Clusterin-ass 23.8 4E+02 0.0087 28.5 8.8 66 202-267 171-236 (267)
339 KOG1003 Actin filament-coating 23.6 8.1E+02 0.017 25.1 21.9 23 455-477 5-27 (205)
340 KOG4809 Rab6 GTPase-interactin 23.3 1.3E+03 0.028 27.4 29.6 45 628-672 516-560 (654)
341 PF10212 TTKRSYEDQ: Predicted 23.2 1.3E+03 0.027 27.2 20.2 199 47-269 304-514 (518)
342 PF14992 TMCO5: TMCO5 family 23.1 9.7E+02 0.021 25.9 13.9 165 305-475 9-181 (280)
343 PF00170 bZIP_1: bZIP transcri 22.9 2.4E+02 0.0052 22.9 5.6 25 625-649 39-63 (64)
344 PF04201 TPD52: Tumour protein 22.8 2.8E+02 0.0061 27.4 6.8 56 597-652 28-92 (162)
345 COG1730 GIM5 Predicted prefold 22.7 7.1E+02 0.015 24.2 13.5 20 309-328 92-111 (145)
346 PRK15396 murein lipoprotein; P 22.5 3.6E+02 0.0079 23.4 6.7 47 208-268 26-72 (78)
347 KOG0804 Cytoplasmic Zn-finger 22.4 1.2E+03 0.027 26.8 14.5 26 693-718 425-450 (493)
348 PLN02678 seryl-tRNA synthetase 22.2 5.1E+02 0.011 29.8 9.9 33 361-393 33-65 (448)
349 KOG2264 Exostosin EXT1L [Signa 22.1 3.4E+02 0.0074 32.0 8.2 56 208-263 94-149 (907)
350 KOG1760 Molecular chaperone Pr 21.9 6.3E+02 0.014 24.0 8.4 30 506-535 30-59 (131)
351 PF05837 CENP-H: Centromere pr 21.6 6.1E+02 0.013 23.0 8.6 64 205-269 15-78 (106)
352 PF04012 PspA_IM30: PspA/IM30 21.6 8.5E+02 0.019 24.7 18.9 43 302-344 32-74 (221)
353 PF07303 Occludin_ELL: Occludi 21.5 6.1E+02 0.013 23.0 12.7 84 308-393 9-98 (101)
354 PF04102 SlyX: SlyX; InterPro 21.5 2E+02 0.0043 24.1 4.9 33 63-95 1-33 (69)
355 smart00502 BBC B-Box C-termina 21.5 5.8E+02 0.013 22.7 12.1 51 556-610 41-91 (127)
356 TIGR03752 conj_TIGR03752 integ 21.4 7E+02 0.015 28.9 10.5 75 355-438 67-141 (472)
357 cd07593 BAR_MUG137_fungi The B 21.2 6.1E+02 0.013 26.2 9.3 80 599-678 115-194 (215)
358 COG5509 Uncharacterized small 21.2 1.9E+02 0.0042 23.8 4.4 19 457-475 28-46 (65)
359 COG3879 Uncharacterized protei 21.2 6.9E+02 0.015 26.5 9.7 16 204-219 54-69 (247)
360 PF08581 Tup_N: Tup N-terminal 20.9 5.6E+02 0.012 22.3 9.1 19 412-430 45-63 (79)
361 PRK05431 seryl-tRNA synthetase 20.9 7.8E+02 0.017 28.0 11.1 65 207-271 35-102 (425)
362 PF06005 DUF904: Protein of un 20.8 5.3E+02 0.012 22.0 9.8 30 204-233 22-51 (72)
363 KOG2264 Exostosin EXT1L [Signa 20.8 3.6E+02 0.0078 31.8 8.0 52 595-653 104-155 (907)
364 PF10046 BLOC1_2: Biogenesis o 20.7 6.1E+02 0.013 22.7 11.4 84 631-714 12-98 (99)
365 PF07200 Mod_r: Modifier of ru 20.6 5.2E+02 0.011 24.6 8.3 59 209-267 29-87 (150)
366 KOG3650 Predicted coiled-coil 20.6 3.3E+02 0.0072 24.6 6.1 48 598-645 56-103 (120)
367 TIGR02977 phageshock_pspA phag 20.6 9.2E+02 0.02 24.7 20.0 44 302-345 33-76 (219)
368 PF12761 End3: Actin cytoskele 20.3 3.6E+02 0.0078 27.5 7.2 83 412-500 102-189 (195)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-50 Score=456.59 Aligned_cols=525 Identities=26% Similarity=0.318 Sum_probs=461.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 005010 152 MEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQ 231 (719)
Q Consensus 152 ~e~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~~~~d~~~~~~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~ 231 (719)
++..+..|+.++++.++.++..+|.+....+.++..+.+.. . .....++.|..++.+||..++.+|.+|+.++.++.
T Consensus 3 ~~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~~~-e--~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~ 79 (698)
T KOG0978|consen 3 VEEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNRVE-E--ALTVLFDELAEENEKLQNLADHLQEKHATLSEQIS 79 (698)
T ss_pred chhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999988887776520 0 01227888999999999999999999999999999
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCCccccccCCCCCCCCCCccchhhhhhhHHHHHH
Q 005010 232 SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVT-KGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHK 310 (719)
Q Consensus 232 ~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~ele 310 (719)
.+.|+++...+++.++..++|+++|++++.+++...+..-...+ .+.++||. |||+ ++|.++.+...+..+.+.++
T Consensus 80 el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~--~~~~-~~~~~t~~~t~~~~l~~~ie 156 (698)
T KOG0978|consen 80 ELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGN--GNGS-LSGTITVNSTELEELRDEIE 156 (698)
T ss_pred HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--cccc-cCcccccchhhhhhhccchh
Confidence 99999999999999999999999999999999888876432222 22333222 2322 33445556666999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 311 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA 388 (719)
Q Consensus 311 E~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~--~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~ 388 (719)
+++.+++.|+.+|+.++..+..+..++..+++.++.. +++..|..|.+++ ++..+....
T Consensus 157 e~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~-----~NE~l~~~~-------------- 217 (698)
T KOG0978|consen 157 ELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ-----YNEELQRKT-------------- 217 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hhhhccccc--------------
Confidence 9999999999999999999999999999999999644 7777778888877 332322221
Q ss_pred HHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHhhcHHHHHHHH
Q 005010 389 WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG-RKEIIAEFRALVSSFPEDMSAMQ 467 (719)
Q Consensus 389 ~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~-k~~~~~E~r~Lissl~~~i~~Lk 467 (719)
+ ++.+++. ...++.+++.++.|+.+|++++.+++....+.+ .++|++||++|++++++++++|+
T Consensus 218 -----~----~~~e~~~------~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~ 282 (698)
T KOG0978|consen 218 -----M----ESDEAIN------SKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLK 282 (698)
T ss_pred -----c----hhhhhhc------cchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1 4455542 344899999999999999999999999999988 48999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHhhcCCCc
Q 005010 468 RQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQ-AMVQDLTDSNLELKLILDMYRRESTDS 546 (719)
Q Consensus 468 ~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk-~~l~ka~~~~~elkl~ldmy~~~~~d~ 546 (719)
+..++|+++..++.+++....++...+..++.+.+.+.+.+....+.+..+. .-+.+.....++++.+++++...+.+.
T Consensus 283 ~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~ 362 (698)
T KOG0978|consen 283 EYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKE 362 (698)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 9999999999999999999999888887777778888888888888888888 777888888999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHh---hhhhhhHHh
Q 005010 547 RDVLAARDLEYK-AWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMR-QKLEAFKR---DMVSLSDAL 621 (719)
Q Consensus 547 rd~~~~~~~E~~-~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr-~~l~~~~~---~~~~l~~~l 621 (719)
||+........+ ++..++.++..+.++..+.+||...|.+..+|+.+...+.++.+++ ..++...| ++.+++..|
T Consensus 363 ~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~L 442 (698)
T KOG0978|consen 363 RDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEEL 442 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence 999999999888 9999999999999999999999999999999999999999999999 77888888 888899999
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhH
Q 005010 622 KSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFF 701 (719)
Q Consensus 622 ~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~ 701 (719)
..+.+...+|++||++||+||||||+||++|++|++++||+|||||+|+++++|.|+.|+.++.+|+.+++++.++++++
T Consensus 443 qk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~ 522 (698)
T KOG0978|consen 443 QKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKL 522 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhc
Q 005010 702 DMKAARIENQVCLFG 716 (719)
Q Consensus 702 ~~~~~~~e~~~~~~~ 716 (719)
..+|.+|||++++|-
T Consensus 523 ~~~i~~leeq~~~lt 537 (698)
T KOG0978|consen 523 ELKIGKLEEQERGLT 537 (698)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999873
No 2
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.3e-06 Score=101.28 Aligned_cols=430 Identities=17% Similarity=0.189 Sum_probs=256.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCCc
Q 005010 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV-TKGAF 279 (719)
Q Consensus 201 ~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~-~~g~~ 279 (719)
.+..|...+..++.....++.+...+...+........-.+..+..+...++...-.....++.++.+-..... +.|+.
T Consensus 56 e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~~~~ 135 (698)
T KOG0978|consen 56 ENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGNGNG 135 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Confidence 35557888888888888889999999999999988999999999999999999999999999999888654332 11221
Q ss_pred cccccCC-CCC-CC--CCCccc-----h--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh
Q 005010 280 FPVLNLG-NKH-VA--GDRVRD-----E--QRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLY------NLQN 342 (719)
Q Consensus 280 ~~~~~~~-~~~-~~--~~~~~~-----~--~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~------~Lk~ 342 (719)
++|+.++ +.+ .+ .+.... . ..+++.++..+.+..........+|..+.........++. .+..
T Consensus 136 ~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~NE~l~~ 215 (698)
T KOG0978|consen 136 SLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQYNEELQR 215 (698)
T ss_pred ccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhccc
Confidence 2222221 111 01 001111 1 1134566677777777777777777777777777777744 3333
Q ss_pred hcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhchHHHHhhhhhhhhhHHHHhhHH
Q 005010 343 TLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE-TELNMKIDLVDVFRRSSAVTDSKIADLGIE 421 (719)
Q Consensus 343 ~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~-~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~ 421 (719)
.---.+-+.++..|..+.+-+.....+.+..+.+++......+.+ ..+ .++. .+. ..+......+......
T Consensus 216 ~~~~~~e~~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~-~~in~e~~------~L~-Ssl~e~~~~l~~~~~~ 287 (698)
T KOG0978|consen 216 KTMESDEAINSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLF-SSINREMR------HLI-SSLQEHEKLLKEYERE 287 (698)
T ss_pred ccchhhhhhccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhh-hhHHHHHH------HHH-HHHHHHHHHHHHHHHH
Confidence 321113334455688888888888888888888887777777763 222 3332 111 1111122333334444
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhh
Q 005010 422 IQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKEC 501 (719)
Q Consensus 422 LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~ 501 (719)
+-....+...|+..+.-+..... .......+|....+..+.++.+--..+.+. +.+..+.+...+..+..+
T Consensus 288 ~k~t~~~~~~lr~~~~s~~~~~~--~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~e- 358 (698)
T KOG0978|consen 288 LKDTESDNLKLRKQHSSAADSLE--SKSRDLESLLDKIQDLISQEAELSKKLRSK------LLESAKKLKILLREKDRE- 358 (698)
T ss_pred HhcccchHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHH-
Confidence 44555666666666665554444 245566666666666666655433211111 111111111111111101
Q ss_pred HHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHH---
Q 005010 502 ETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELR--- 578 (719)
Q Consensus 502 ~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~r--- 578 (719)
......|...+.++.. .++++++||++.+++++|.++ .++++|++.+.+++-......+
T Consensus 359 -------~~k~~di~~~k~el~~------~~~~~le~~k~~~ke~~~~~~-----~ka~~E~e~l~q~l~~~~k~e~~e~ 420 (698)
T KOG0978|consen 359 -------SQKERDILVAKSELLK------TNELRLEMLKSLLKEQRDKLQ-----VKARAETESLLQRLKALDKEERSEI 420 (698)
T ss_pred -------hhhhHhHHHHHHHHHH------HHHHHHHHHhCCCHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111233333333332 288999999999999999887 6899999999999854433222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 005010 579 VKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE 658 (719)
Q Consensus 579 vk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e 658 (719)
-+.+++ ++.++|+...+.+.+|+.++...+ .-+.....-..||-..-+.+++-|....+.-..-+--+.+
T Consensus 421 ~k~~~d---~~~r~~~~~~~~~e~Lqk~~~~~k-------~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e 490 (698)
T KOG0978|consen 421 RKQALD---DAERQIRQVEELSEELQKKEKNFK-------CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSE 490 (698)
T ss_pred HhhhhH---HHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 223333 788899999999999999988875 2222223334444445556666666666665555555555
Q ss_pred hhhhhhH---HHHHhHhhhh
Q 005010 659 RDDYNIK---LVLEGVRARQ 675 (719)
Q Consensus 659 ~dd~n~k---l~~E~~ka~q 675 (719)
++-.|.+ |+.++.+.+-
T Consensus 491 ~~~~~q~~k~L~~ek~~l~~ 510 (698)
T KOG0978|consen 491 RIKANQKHKLLREEKSKLEE 510 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 5555543 4444444333
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.17 E-value=0.00011 Score=93.83 Aligned_cols=447 Identities=18% Similarity=0.217 Sum_probs=270.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcc
Q 005010 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFF 280 (719)
Q Consensus 201 ~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~ 280 (719)
.+..+......+.+++..++...-.-+..-..+...+...+.+...|.+++++.+.......+++-++.++-+....-.-
T Consensus 1288 ~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e 1367 (1930)
T KOG0161|consen 1288 KLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFE 1367 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666666555666666666666668899999999999999999998888776655322211000
Q ss_pred ccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-h-hhh----cCh
Q 005010 281 PVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-K-CLS----SSK 354 (719)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~-~-~I~----~S~ 354 (719)
........++++.+-.+..|++++++.........-.+++.++.|... + ... .-.
T Consensus 1368 -------------------~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~ 1428 (1930)
T KOG0161|consen 1368 -------------------EEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRA 1428 (1930)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 001112356777788888888888777776666666666666655432 1 111 012
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHH
Q 005010 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEM 434 (719)
Q Consensus 355 ~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~ 434 (719)
.+..|..+.......+.+.+...++++.++++-.+..+.. ..++. + +...+..+-..+..++.+...+..
T Consensus 1429 ~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~-----~tel~-k----l~~~lee~~e~~e~l~renk~l~~ 1498 (1930)
T KOG0161|consen 1429 AVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQL-----STELQ-K----LKNALEELLEQLEELRRENKNLSQ 1498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777777777777888887754443221 11111 1 134445555566667777777777
Q ss_pred HHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH--HHHHHHHHHhhh--hHHHHHHhhhhhhHHhhhcch
Q 005010 435 RLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEA--ALDIHILRADVL--SLTNVLERKVKECETLLASSA 509 (719)
Q Consensus 435 e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~--~~e~~~Lr~e~~--~l~~~l~~k~~e~~~l~~~~~ 509 (719)
+++.+....+. +..+.|+.+....+..++..|+..+.-+.++ ..+...+|.++. -++.-+. ..+.
T Consensus 1499 ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~e----------r~l~ 1568 (1930)
T KOG0161|consen 1499 EIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIE----------RRLQ 1568 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH----------HHHH
Confidence 77774444442 4666677777766666666666665444432 122222232221 0111110 0112
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhh--cHHHHHHHHHHHHH
Q 005010 510 DQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQ--SLELRVKTAIEAEA 587 (719)
Q Consensus 510 ~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~--~~~~rvk~~~e~e~ 587 (719)
..++++...+.. +...++-|.. ...+|.+.++++-.+++.+... .++.-+-.++-+-.
T Consensus 1569 ek~Ee~E~~rk~----------~~~~i~~~q~----------~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~ 1628 (1930)
T KOG0161|consen 1569 EKDEEIEELRKN----------LQRQLESLQA----------ELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANE 1628 (1930)
T ss_pred hhhHHHHHHHHH----------HHHHHHHHHH----------hhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhH
Confidence 223333333322 2333333322 1226777777777777766431 12223334455555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005010 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV 667 (719)
Q Consensus 588 ~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~ 667 (719)
+++..|....+.+.+|+..++.+.+...++.+.+...+.-..++-+|++.+-...+-.-.-+..+=.++-|.-|.+..+-
T Consensus 1629 d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1629 DAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999999999999999998888887777776666666555554432
Q ss_pred HHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhh
Q 005010 668 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQVC 713 (719)
Q Consensus 668 ~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~ 713 (719)
+ .-.++-.+|-.|+..+.+++..++-.....+..+|+.|
T Consensus 1709 ~-------~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~k 1747 (1930)
T KOG0161|consen 1709 A-------QNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAK 1747 (1930)
T ss_pred h-------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 1 11355566666777777777777766666666666554
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.95 E-value=0.00081 Score=86.39 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=35.2
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~ 477 (719)
+.++.++...+..+-..+.+|-+.......+.+. .....|...+++++......|.+++..+|...
T Consensus 1244 E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~ql 1310 (1930)
T KOG0161|consen 1244 EAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQL 1310 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333343444433333442 34555666677777777777777776666443
No 5
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.93 E-value=0.00077 Score=85.28 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=71.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh----hhHHHHHhH-hhhhHHHHHHHhHHHHHHHHHH
Q 005010 619 DALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDY----NIKLVLEGV-RARQLQDALLMDKHMMESEIQQ 693 (719)
Q Consensus 619 ~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~----n~kl~~E~~-ka~q~~~~l~~ek~~l~~~~~~ 693 (719)
...+.......+|-.|+...-.-++++-.||+-|--|+-+.=+. |.-.|.++. --.++...++.||+.++.++.+
T Consensus 1092 e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~ 1171 (1822)
T KOG4674|consen 1092 EQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDT 1171 (1822)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHH
Confidence 46677788999999999999999999999999999999888777 777777771 1246788899999999999888
Q ss_pred HHhhHhhHHHHHH
Q 005010 694 ANASLNFFDMKAA 706 (719)
Q Consensus 694 ~~~~~e~~~~~~~ 706 (719)
+..-...+.+.+.
T Consensus 1172 lk~e~~~L~qq~~ 1184 (1822)
T KOG4674|consen 1172 LKRENARLKQQVA 1184 (1822)
T ss_pred HHHHHHHHHHHHH
Confidence 7766555555444
No 6
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.92 E-value=0.00049 Score=82.14 Aligned_cols=207 Identities=16% Similarity=0.188 Sum_probs=105.0
Q ss_pred HHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCCCCCCCCCccchhhhhh
Q 005010 224 KSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLR 303 (719)
Q Consensus 224 k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e 303 (719)
+.-..++..+++.+.....++..+..+++.++.+| ++.+-+-++..+...+.|.+. +..+ .......+.
T Consensus 49 kee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e--------~l~~--ld~~~~q~~ 117 (775)
T PF10174_consen 49 KEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFE--------SLQE--LDKAQEQFE 117 (775)
T ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccc--------hhhh--hhhHHHHHH
Confidence 33444444555555555666666666666666666 666666666654333322210 0000 000011133
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhh-------hcChhHHHHHHHHHHHHHHHHHHHH
Q 005010 304 DMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCL-------SSSKAFLSVKNQLEKSKSEVFKYQA 375 (719)
Q Consensus 304 ~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~-~~I-------~~S~~yk~L~~q~~~lk~eld~~r~ 375 (719)
.|.++++.+..-...--..+++++..+..+.+.+......+.-+ +.+ ..+........++..+.+.+-++..
T Consensus 118 rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~ 197 (775)
T PF10174_consen 118 RLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLES 197 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 34333333332222222233333333333333322222222211 111 2234445666678888888888888
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhhc--hHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhc
Q 005010 376 LFEKLQVEKDNLAWRE-TELNMKID--LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASR 441 (719)
Q Consensus 376 ~~ekLq~er~~~~~~~-~E~~~k~E--~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~ 441 (719)
+++..-.+...++..+ .-+.+..+ .-++.+.++...++.|..+|..|..+-.+..+|+..+..+..
T Consensus 198 lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~ 266 (775)
T PF10174_consen 198 LLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA 266 (775)
T ss_pred HHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 8888877776664443 11212222 122456666777888999998888888888887776654443
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=0.0012 Score=84.51 Aligned_cols=263 Identities=12% Similarity=0.123 Sum_probs=117.2
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-----------HHhhhhhhHHhh----------
Q 005010 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNV-----------LERKVKECETLL---------- 505 (719)
Q Consensus 447 ~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~-----------l~~k~~e~~~l~---------- 505 (719)
..+.++...+.++++.+..+...+..++.....+..++..+...... +...+.+...+.
T Consensus 695 ~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l 774 (1311)
T TIGR00606 695 EFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL 774 (1311)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888888877776554444443332222211 111111100000
Q ss_pred ----------hcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcH
Q 005010 506 ----------ASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSL 575 (719)
Q Consensus 506 ----------~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~ 575 (719)
..+...+..|..+..++..++..+.++..-+.-|.+ + +.+-++...=.....++..++..++....
T Consensus 775 ~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~---~-~s~~ele~ei~~~~~el~~l~~~~e~l~~ 850 (1311)
T TIGR00606 775 GTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL---D-RTVQQVNQEKQEKQHELDTVVSKIELNRK 850 (1311)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112344455566666667777766666666665533 1 12222111111233334444333322111
Q ss_pred H-----HHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHH
Q 005010 576 E-----LRVKTAIEAE---AISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQT 647 (719)
Q Consensus 576 ~-----~rvk~~~e~e---~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~ 647 (719)
+ ..++.+.... ..-.-++.........|...++.....+..+...+...+.+.+.+-.+++..-..|+++..
T Consensus 851 e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1311)
T TIGR00606 851 LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 0 0111110000 0111112222223334444444444455555555555555555555566666666666666
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHH-----HHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhh
Q 005010 648 QNQQLLQQITERDDYNIKLVLEGVRARQLQDAL-----LMDKHMMESEIQQANASLNFFDMKAARIENQVC 713 (719)
Q Consensus 648 Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l-----~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~ 713 (719)
++..-+.++...=+..-..+..-...+...... -.....++.++..+..+++.....+..+.++++
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~ 1001 (1311)
T TIGR00606 931 SKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMR 1001 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555544333333332222222221111 112344444555554455555555554444443
No 8
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.88 E-value=0.00066 Score=81.10 Aligned_cols=274 Identities=17% Similarity=0.195 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccc
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLN 284 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~ 284 (719)
+.. +...+..+..|++.+..+..++..+++.+...+.++..++..|+.+..++.++--.| ...|.+..+.+
T Consensus 106 l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L--------~~~g~~~~~~~ 176 (775)
T PF10174_consen 106 LQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML--------QSKGLSAEAEE 176 (775)
T ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhcCCcccchh
Confidence 344 777788888889999999999999988888888888888888888888888775555 12233221110
Q ss_pred CCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHH
Q 005010 285 LGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLEL----------------------------------KGLHDGR 330 (719)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~EL----------------------------------e~l~~e~ 330 (719)
. .....+. +.+++..+..+..+...+-.+. -.+...+
T Consensus 177 ~--------~~~~~~~-~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l 247 (775)
T PF10174_consen 177 E--------DNEALRR-IREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERML 247 (775)
T ss_pred h--------hhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111111 3333333333333333333333 2222222
Q ss_pred HHHHHHHHHHHhhcc--cc--hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhh
Q 005010 331 IKVLQQLYNLQNTLK--SV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRR 406 (719)
Q Consensus 331 ~~L~~e~~~Lk~~l~--~~--~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~ 406 (719)
..+..++..|+.... +. +... .......+....+++.+|++...+..--+|.-.+........ +...-.++
T Consensus 248 ~~le~Ei~~L~~~~~~~~~~r~~~~--k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~---~~~~d~r~ 322 (775)
T PF10174_consen 248 RDLEDEIYRLRSRGELSEADRDRLD--KQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLE---EQDSDMRQ 322 (775)
T ss_pred HHHHHHHHHHHhcccccccchHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHH
Confidence 334444444444322 10 1110 012223333334555566666665444444444444432221 11111233
Q ss_pred hhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHH----HHHHHHH
Q 005010 407 SSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKE----AALDIHI 482 (719)
Q Consensus 407 ~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke----~~~e~~~ 482 (719)
-+.+++..+...+..-..+-++.|.|+.+++......++ -..-+..++.+..-+.+++..+++ ....++.
T Consensus 323 hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~k------k~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~ 396 (775)
T PF10174_consen 323 HIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEK------KQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINV 396 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555666666666666665555553 233455666777777777766664 3457778
Q ss_pred HHHhhhhHHHHHHhhhhhhHHhhhc
Q 005010 483 LRADVLSLTNVLERKVKECETLLAS 507 (719)
Q Consensus 483 Lr~e~~~l~~~l~~k~~e~~~l~~~ 507 (719)
|...++.+...|..+......+..+
T Consensus 397 Lq~kie~Lee~l~ekd~ql~~~k~R 421 (775)
T PF10174_consen 397 LQKKIENLEEQLREKDRQLDEEKER 421 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888776554444443333
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=98.88 E-value=0.00091 Score=82.33 Aligned_cols=136 Identities=10% Similarity=0.112 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch--hhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVK--CLSSSKAFLSVKNQLEKSKSEVFKYQALFEK 379 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~--~I~~S~~yk~L~~q~~~lk~eld~~r~~~ek 379 (719)
+..+...+.++.........++..++.....+..++..|...+.... +-.-+..+..|......+...++..+..+..
T Consensus 260 ~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~ 339 (880)
T PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555666666666666666666666554321 1111122345555555566666555555555
Q ss_pred HHHHHHHHHHHHHHHhhhh-----chHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 380 LQVEKDNLAWRETELNMKI-----DLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 380 Lq~er~~~~~~~~E~~~k~-----E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
+.+....+...+.++.-.. +..+ .......+...+..++..+..++.+.+.+...++.
T Consensus 340 ~~~~~e~~~~~~~~le~~~~~l~~~~~~-l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~ 402 (880)
T PRK02224 340 HNEEAESLREDADDLEERAEELREEAAE-LESELEEAREAVEDRREEIEELEEEIEELRERFGD 402 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444333333332221000 0011 11111223444555555555555555555555543
No 10
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.78 E-value=0.0023 Score=81.11 Aligned_cols=472 Identities=15% Similarity=0.172 Sum_probs=265.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc---C
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAK----LNRLKGELESAVKELEECNCKLAALRAERDVTK---G 277 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e----~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~---g 277 (719)
+.....+|-+..+.||....-++.++...-|++...+.+ +.+|+..|.++...|.....++.-++.+..... +
T Consensus 176 ~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie 255 (1822)
T KOG4674|consen 176 SQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIE 255 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777777777777777777 888899999999888888887766653211110 0
Q ss_pred CccccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHH
Q 005010 278 AFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL 357 (719)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk 357 (719)
.- ++.+.+-.-..... -+.+..++...+.+.+-=...++++..+...+.+.+..++.-+.+. +..|.
T Consensus 256 ~~-------~~~ls~~k~t~~s~-~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~-----~~~~~ 322 (1822)
T KOG4674|consen 256 SL-------NLELSKLKDTAESS-EEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDA-----SERNK 322 (1822)
T ss_pred HH-------HHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhH
Confidence 00 00000000011111 3567788888899999999999999999999999999999888776 34445
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHH
Q 005010 358 SVKNQLEKS----KSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIE 433 (719)
Q Consensus 358 ~L~~q~~~l----k~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~ 433 (719)
...+++.-+ ...++.+-..+..|+++...-.......+ ........ +.+-+.+......|++++..|-.+.
T Consensus 323 e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~-~~~~~s~~----~a~~s~~~~~~~sLtk~ys~~~~~q 397 (1822)
T KOG4674|consen 323 ENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATG-ESSMVSEK----AALASSLIRPGSSLTKLYSKYSKLQ 397 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhc-ccchhhhH----HHHHHhhcccchhHHHHHHHHHHHH
Confidence 555544443 33333343444444444433322221100 00011100 0012466677777777777777777
Q ss_pred HHHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhHHHHHHhhhhhh
Q 005010 434 MRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKY-----------KEAALDIHILRADVLSLTNVLERKVKEC 501 (719)
Q Consensus 434 ~e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~-----------Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~ 501 (719)
-+++...-+.++ .++...|...+..+.-.+..--+++.|. -.....+..+.++++++...+..+-++.
T Consensus 398 qqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~ren 477 (1822)
T KOG4674|consen 398 QQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLEREN 477 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765555543 3444444444333222222222222111 1233444444444444444432221110
Q ss_pred H-----------------------------------------------------------------------Hhhh----
Q 005010 502 E-----------------------------------------------------------------------TLLA---- 506 (719)
Q Consensus 502 ~-----------------------------------------------------------------------~l~~---- 506 (719)
+ .|.+
T Consensus 478 k~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~ 557 (1822)
T KOG4674|consen 478 KLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEA 557 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000
Q ss_pred ---------------cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhH---------HHHHHHHHHHHHH
Q 005010 507 ---------------SSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDV---------LAARDLEYKAWAH 562 (719)
Q Consensus 507 ---------------~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~---------~~~~~~E~~~~ae 562 (719)
.+....+.|..|...+....+.+.-|---.|||+.-..+.+|. ++.....+.+...
T Consensus 558 ~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~ 637 (1822)
T KOG4674|consen 558 AEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKR 637 (1822)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHH
Confidence 0122334445555555555555555555678884222222222 2222222223444
Q ss_pred HHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhH
Q 005010 563 VHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSY 642 (719)
Q Consensus 563 ~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~ 642 (719)
+.+|...|.-.. + ..-..+..+++++..|+..+.+.+-....+.-.+.=.+...+.|...|+.+-.-.
T Consensus 638 l~qLe~~le~~~-----~-------E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~ 705 (1822)
T KOG4674|consen 638 LRQLENELESYK-----K-------EKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEV 705 (1822)
T ss_pred HHHHHHHHHHHH-----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443111 1 1112345556666666666666666666666666666777788888888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHH
Q 005010 643 DDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAA 706 (719)
Q Consensus 643 edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~ 706 (719)
+.+.++|..|=..|...+-.+-.+-.|-+.++-.+..+-.+...|..+-.-+..+-+++..-..
T Consensus 706 ~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~ 769 (1822)
T KOG4674|consen 706 ETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELE 769 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999998888888888777777776665555544444443333
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=98.75 E-value=0.0022 Score=79.04 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhhcC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSS-KAFLSVKNQLEKSKSEVFKYQALFEK 379 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~-~~I~~S-~~yk~L~~q~~~lk~eld~~r~~~ek 379 (719)
...+...+.++..-++.-..++..+......+..++..+..++.+. ..+.++ ..+..+...+..+...++..+.....
T Consensus 351 ~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~ 430 (880)
T PRK02224 351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE 430 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444555555555555555555555554433 222111 23445555555566666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 005010 380 LQVEKDNLAWRETE 393 (719)
Q Consensus 380 Lq~er~~~~~~~~E 393 (719)
+++....+...+.+
T Consensus 431 ~~~~~~~~~~~l~~ 444 (880)
T PRK02224 431 LEATLRTARERVEE 444 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555555433
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.66 E-value=0.0051 Score=78.14 Aligned_cols=157 Identities=15% Similarity=0.266 Sum_probs=103.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHH
Q 005010 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (719)
Q Consensus 353 S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L 432 (719)
+..|..+...+.....++...+..+..|+.++.++..+..+.. .+ .+ ...+.++..++..+.++-.+...+
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~----~~---~~~~~~l~~l~~~l~~~~~e~~~~ 704 (1201)
T PF12128_consen 634 NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK--EE----RK---EQIEEQLNELEEELKQLKQELEEL 704 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HH----HH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888888888888888887763331 11 11 123678888888888888888888
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhH
Q 005010 433 EMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA-ALDIHILRADVLSLTNVLERKVKECETLLASSADQ 511 (719)
Q Consensus 433 ~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~-~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~ 511 (719)
..++.....+.. ...+..+..+.+.+...+.+++.++...+.. ...+..|. ..+. ..|..+ ..+
T Consensus 705 ~~~~~~~~~e~~-~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le-------~~~~------~eL~~~-GvD 769 (1201)
T PF12128_consen 705 LEELKEQLKELR-NELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELE-------QQYN------QELAGK-GVD 769 (1201)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH------HHHHhC-CCC
Confidence 888877554444 4667777888888888888888887555432 22233332 2221 122222 233
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH
Q 005010 512 VAEIHKLQAMVQDLTDSNLELK 533 (719)
Q Consensus 512 ~~~ik~Lk~~l~ka~~~~~elk 533 (719)
...|..|+.++..+....+...
T Consensus 770 ~~~I~~l~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 770 PERIQQLKQEIEQLEKELKRIE 791 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888887777554443
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=0.007 Score=77.68 Aligned_cols=279 Identities=10% Similarity=0.145 Sum_probs=135.2
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHH----HHHHHHHHHHHh---
Q 005010 414 KIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYK----EAALDIHILRAD--- 486 (719)
Q Consensus 414 ~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~K----e~~~e~~~Lr~e--- 486 (719)
.|..+..++..+....+.|..++..... .....++..-+.+++..+..+..++..+. ....++..|...
T Consensus 793 ~i~r~~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~e 868 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDL----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543222 12456666666666666666655443332 122333333221
Q ss_pred hhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 005010 487 VLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSL 566 (719)
Q Consensus 487 ~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~L 566 (719)
+.+....+.........+..++..-...+..+...++.+..+...+.-.+..+...-.+- .......+.++..++..+
T Consensus 869 l~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 946 (1311)
T TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL--ISSKETSNKKAQDKVNDI 946 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 122121121111112233333334444555555555555555555555555544321111 223334555677777777
Q ss_pred HhhhhhhcH-HHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHH--
Q 005010 567 KSSLDEQSL-ELRVKTAI-----EAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETI-- 638 (719)
Q Consensus 567 k~~L~e~~~-~~rvk~~~-----e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~-- 638 (719)
+..++.... -..+.... ..-..+...|...+..+..+...+......+..+...+.........+...|...
T Consensus 947 ~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~ 1026 (1311)
T TIGR00606 947 KEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKR 1026 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766543221 11111100 0112344445555555666666666666666666666666666666666666666
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhHH-----HHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhH
Q 005010 639 GQSYDDMQTQNQQLLQQITERDDYNIKL-----VLEGVRARQLQDALLMDKHMMESEIQQANASL 698 (719)
Q Consensus 639 gqA~edmq~Qn~~ll~ql~e~dd~n~kl-----~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~ 698 (719)
-....++..+-..|-.++.+.|-..++- -.+.-..+..+..++.++..|+.++..+...+
T Consensus 1027 ~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1027 ENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666665444332 22222233344555666666666666666666
No 14
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=98.53 E-value=6.6e-07 Score=80.14 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q 005010 631 YLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIEN 710 (719)
Q Consensus 631 l~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~ 710 (719)
|.+||..+.+||++.+.++..++.+++..++...+|..|+.|++|.||.+|+.++.|..++..+++++.+....|..|.+
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhc
Q 005010 711 QVCLFG 716 (719)
Q Consensus 711 ~~~~~~ 716 (719)
-++.+.
T Consensus 81 ~E~~~~ 86 (96)
T PF08647_consen 81 TEKEFV 86 (96)
T ss_pred HHHHHH
Confidence 776553
No 15
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.51 E-value=0.0071 Score=72.11 Aligned_cols=362 Identities=17% Similarity=0.135 Sum_probs=187.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------hhhhc-----ChhHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-------KCLSS-----SKAFLSVKNQLEKSKSE 369 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~-------~~I~~-----S~~yk~L~~q~~~lk~e 369 (719)
+.-|..+++|=-+..-.--.||+.+..+...|.+++..+..+-+.- +.+++ .+-|+-----+.+++..
T Consensus 186 ir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdR 265 (1195)
T KOG4643|consen 186 IRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDR 265 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHH
Confidence 3444555555444444444555555555555555555554443311 11111 13344333334446778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhH-
Q 005010 370 VFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEI- 448 (719)
Q Consensus 370 ld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~- 448 (719)
+++++.....|+.++.-+..++.-.++..|. .+.+++|+++.++|.-++.++++.+.+.++.-.++.....
T Consensus 266 veelkedN~vLleekeMLeeQLq~lrarse~--------~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 266 VEELKEDNRVLLEEKEMLEEQLQKLRARSEG--------ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--------CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888778888888888877555433332 3458999999999999999999999999886665553111
Q ss_pred HHHHHHH--------------HhhcHHHHHHHHH------HH--HHHHHHHHHHHHHHHhhhhHHHHHHhhhhh------
Q 005010 449 IAEFRAL--------------VSSFPEDMSAMQR------QL--SKYKEAALDIHILRADVLSLTNVLERKVKE------ 500 (719)
Q Consensus 449 ~~E~r~L--------------issl~~~i~~Lk~------Ev--~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e------ 500 (719)
.+.+..- -+|++.++.+|.+ ++ +++=.+..+... .+++++-+.......+
T Consensus 338 ~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqs--ss~Ee~~SK~leleke~KnLs~ 415 (1195)
T KOG4643|consen 338 KEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQS--SSYEELISKHLELEKEHKNLSK 415 (1195)
T ss_pred HHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhHhHhH
Confidence 1111111 1234444444443 00 111111111111 0111111111000111
Q ss_pred -hHHhhh-------cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 005010 501 -CETLLA-------SSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDE 572 (719)
Q Consensus 501 -~~~l~~-------~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e 572 (719)
++.|.+ ..+...+.-|.|..+..++++.+.-....++-|......-+ ++.-.-....++...|+.++..
T Consensus 416 k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~---q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 416 KHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELD---QLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 23455677788888888888888888877777743222222 2222222233333333333222
Q ss_pred hcH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005010 573 QSL--ELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQ 650 (719)
Q Consensus 573 ~~~--~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~ 650 (719)
.+. ..+....+ .-..++.....++-...-.+.........|+..+...+.|..-|+..|-.+.+- .||+
T Consensus 493 lnk~L~~r~~els----rl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-----~qn~ 563 (1195)
T KOG4643|consen 493 LNKSLNNRDLELS----RLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-----SQNG 563 (1195)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----hHHH
Confidence 110 11111111 011122233333334444444444555566677777788888999999988765 7888
Q ss_pred HHHHHhhhhhhhhh---HHHHHhHhhhhHHHHHHHhHHHHHHHH
Q 005010 651 QLLQQITERDDYNI---KLVLEGVRARQLQDALLMDKHMMESEI 691 (719)
Q Consensus 651 ~ll~ql~e~dd~n~---kl~~E~~ka~q~~~~l~~ek~~l~~~~ 691 (719)
-+|-|.-+.+|.-- |-+-+.++ .+++.++.|+.++
T Consensus 564 ~~LEq~~n~lE~~~~elkk~idaL~------alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 564 ALLEQNNNDLELIHNELKKYIDALN------ALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 88888877666433 33334443 6666677776664
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.50 E-value=0.012 Score=74.22 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhh
Q 005010 642 YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQVC 713 (719)
Q Consensus 642 ~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~ 713 (719)
.+.++.+-.++-.+|.....-|++.+. -|..+..+..-+..+...+....+.....|.+|..+.+
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~-------~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~ 1017 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQ-------EYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555665666655555666554 45555556666666666666666666666666665543
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.43 E-value=0.019 Score=73.02 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHH
Q 005010 647 TQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMK 704 (719)
Q Consensus 647 ~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~ 704 (719)
..-.++--++.....-|+..+.|-=.....|..|..+.+.+......+...++..+..
T Consensus 949 ~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~ 1006 (1163)
T COG1196 949 REIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006 (1163)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444456777788877777777777777777777777777777666666665543
No 18
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.31 E-value=0.032 Score=70.39 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHHHH
Q 005010 79 DSTLKVVNKSWEEL 92 (719)
Q Consensus 79 d~~L~~Vnr~W~QL 92 (719)
..+|.-|+-.|..+
T Consensus 178 ~~nL~r~~d~l~el 191 (1179)
T TIGR02168 178 ERKLERTRENLDRL 191 (1179)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 19
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.24 E-value=0.043 Score=69.24 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 005010 48 QKLVQKLETQ 57 (719)
Q Consensus 48 ~kL~rqLe~~ 57 (719)
..|.++.+..
T Consensus 196 ~~L~~q~~~a 205 (1179)
T TIGR02168 196 NELERQLKSL 205 (1179)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=98.17 E-value=0.05 Score=67.09 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=16.1
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHH
Q 005010 674 RQLQDALLMDKHMMESEIQQANASLNFFDMKAAR 707 (719)
Q Consensus 674 ~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~ 707 (719)
+..+..+..+...+..++..+...++.....+.+
T Consensus 672 ~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~ 705 (880)
T PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555444433333
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.10 E-value=0.037 Score=63.53 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=8.2
Q ss_pred HhhcHHHHHHHHHHHHH
Q 005010 456 VSSFPEDMSAMQRQLSK 472 (719)
Q Consensus 456 issl~~~i~~Lk~Ev~R 472 (719)
+.+...+|..|+.++.+
T Consensus 366 ~e~~k~~ie~L~~el~~ 382 (546)
T PF07888_consen 366 AEADKDEIEKLSRELQM 382 (546)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 34444455555555533
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.09 E-value=0.04 Score=63.22 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhh----hhHHHHHHHhHHHHHHHHHHHHhhHhh
Q 005010 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRA----RQLQDALLMDKHMMESEIQQANASLNF 700 (719)
Q Consensus 625 ~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka----~q~~~~l~~ek~~l~~~~~~~~~~~e~ 700 (719)
+.+..-|-.|+..+-..|..-..++++|=-+|...-|+|.=.++|.-+- +.....+..||+.|..+.+.+...|..
T Consensus 370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~ 449 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIER 449 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777777777777777777777774334443332 334456788999999999999999888
Q ss_pred HHHHHHHHHh
Q 005010 701 FDMKAARIEN 710 (719)
Q Consensus 701 ~~~~~~~~e~ 710 (719)
+-.++.++-|
T Consensus 450 Le~r~~~~~~ 459 (546)
T PF07888_consen 450 LEQRLDKVAD 459 (546)
T ss_pred HHHHHHHhhh
Confidence 8888777654
No 23
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=98.09 E-value=0.024 Score=60.55 Aligned_cols=171 Identities=21% Similarity=0.252 Sum_probs=107.6
Q ss_pred HHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005010 415 IADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVL 494 (719)
Q Consensus 415 i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l 494 (719)
...|-..|.+||.++-+|...++.-- --+|..|+..|..|..+...+.. .+..|+.+--++...|
T Consensus 108 tn~L~rkl~qLr~EK~~lE~~Le~Eq------------E~~V~kL~k~i~~Le~e~~~~q~---~le~Lr~EKVdlEn~L 172 (310)
T PF09755_consen 108 TNDLSRKLNQLRQEKVELENQLEQEQ------------EYLVNKLQKKIERLEKEKSAKQE---ELERLRREKVDLENTL 172 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHhHHHHH
Confidence 35667788889999988877666421 12566666677766665544432 2345666655666666
Q ss_pred HhhhhhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHH---------HHHHHHH-HHHHHHH
Q 005010 495 ERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVL---------AARDLEY-KAWAHVH 564 (719)
Q Consensus 495 ~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~---------~~~~~E~-~~~ae~~ 564 (719)
.. .+...|..|-.+..++-....-|+.-|+.-.+.|..|+|++ +...++. .++.+|.
T Consensus 173 E~-------------EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~ 239 (310)
T PF09755_consen 173 EQ-------------EQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVS 239 (310)
T ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHH
Confidence 32 45567788888888888888888888887667788999887 4344443 6777888
Q ss_pred HHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q 005010 565 SLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLS 618 (719)
Q Consensus 565 ~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~ 618 (719)
.|+..|.....+.-.+.+ .+.+.....-++...||.+|..--.....|.
T Consensus 240 RLR~qL~~sq~e~~~k~~-----~~~~eek~ireEN~rLqr~L~~E~erreal~ 288 (310)
T PF09755_consen 240 RLRQQLAASQQEHSEKMA-----QYLQEEKEIREENRRLQRKLQREVERREALC 288 (310)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888654443222221 2233344555666777777766533333333
No 24
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.03 E-value=0.03 Score=68.45 Aligned_cols=217 Identities=22% Similarity=0.257 Sum_probs=103.5
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hH
Q 005010 414 KIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVL--SL 490 (719)
Q Consensus 414 ~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~--~l 490 (719)
.+..++....++-.++-.+++..+...+.... ..++.+++.=+++|++++..++.++.+.++-..+....-.+.+ .+
T Consensus 589 ~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~ 668 (1317)
T KOG0612|consen 589 KLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEAL 668 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455666666666666665555443 4666677777777777777777766555431111110000000 01
Q ss_pred HHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 005010 491 TNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSL 570 (719)
Q Consensus 491 ~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L 570 (719)
..-+. .+.+.+.+++.....+.+.+ +|+.....|+.+..-. +..++.|..++.... ++.++++.|+.-+
T Consensus 669 e~~~e---~~lk~~q~~~eq~~~E~~~~-----~L~~~e~~~~e~~~~l-seek~ar~k~e~~~~--~i~~e~e~L~~d~ 737 (1317)
T KOG0612|consen 669 EIKLE---RKLKMLQNELEQENAEHHRL-----RLQDKEAQMKEIESKL-SEEKSAREKAENLLL--EIEAELEYLSNDY 737 (1317)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHh-cccccHHHHHHHHHH--HHHHHHHHHhhhh
Confidence 11111 11222222233333333333 2333344455444433 335566655554333 4677777777755
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHH------HHHHHHHHHHhHHH
Q 005010 571 DEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEA------YLSEIETIGQSYDD 644 (719)
Q Consensus 571 ~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~a------l~~Eie~~gqA~ed 644 (719)
-.... ..++. .+.-.....+...|+..|++--..-..++..|++..++.+. +..+++.+-++=..
T Consensus 738 ~~~~~-----~~~~l----~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ekq~~~~~~~l~~~K~~ 808 (1317)
T KOG0612|consen 738 KQSQE-----KLNEL----RRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKKLLDELAELKKQ 808 (1317)
T ss_pred hhhcc-----chhhh----hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 22210 01111 11222334455667777777666666677777766665444 33444444444444
Q ss_pred HHHHHH
Q 005010 645 MQTQNQ 650 (719)
Q Consensus 645 mq~Qn~ 650 (719)
|.++|+
T Consensus 809 ~e~~~~ 814 (1317)
T KOG0612|consen 809 LEEENA 814 (1317)
T ss_pred HHHHHH
Confidence 444443
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=97.98 E-value=0.11 Score=64.17 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=15.5
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHh
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEAS 440 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~ 440 (719)
..++..+...+..++...++|.-.++...
T Consensus 404 ~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 404 EEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555433
No 26
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.92 E-value=0.088 Score=61.26 Aligned_cols=304 Identities=18% Similarity=0.192 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHH
Q 005010 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEM 434 (719)
Q Consensus 355 ~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~ 434 (719)
.|...-..+...+.++..+|..+..+-.+++.-..+..+. ...+ .....++..|-..|.++...-+....
T Consensus 124 q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea------~~~a----~~~~~kve~L~~Ei~~lke~l~~~~~ 193 (522)
T PF05701_consen 124 QYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEA------VSAA----EENEEKVEELSKEIIALKESLESAKL 193 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555544443222 1111 12356777777777777777777666
Q ss_pred HHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHH
Q 005010 435 RLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAE 514 (719)
Q Consensus 435 e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ 514 (719)
...++... +..+..+....+..+...+.+-+.++.+++.....+..|...+ ......
T Consensus 194 a~~eAeee--~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL---------------------~~a~~~ 250 (522)
T PF05701_consen 194 AHIEAEEE--RIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKL---------------------AEASAE 250 (522)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH
Confidence 55554432 2345555555555565555555555555554432222222221 222234
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHH-HHHHHHHHHHHHHHHH
Q 005010 515 IHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLEL-RVKTAIEAEAISQQRL 593 (719)
Q Consensus 515 ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~-rvk~~~e~e~~~~~kl 593 (719)
|..|+.++...... .|....+.-.. ...+...=..++.+++..+..|+....+. .++...+ .....|
T Consensus 251 l~~Lq~El~~~~~~--~l~~~~~~~~~-------~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~ve---sL~~EL 318 (522)
T PF05701_consen 251 LESLQAELEAAKES--KLEEEAEAKEK-------SSELQSSLASAKKELEEAKKELEKAKEEASSLRASVE---SLRSEL 318 (522)
T ss_pred HHHHHHHHHHHHHH--HHhhhHHhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 44444444433331 11110000000 00000000123444444444443211110 0010100 111233
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhh
Q 005010 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRA 673 (719)
Q Consensus 594 ~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka 673 (719)
.....++..|+.+.....-.+..|...|.....+.++...+...+..++.+|...-+.+-....+--......-.|-.++
T Consensus 319 e~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~ 398 (522)
T PF05701_consen 319 EKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKA 398 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555556666666666666666666666655555444433332233333344444
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhHhhHHH
Q 005010 674 RQLQDALLMDKHMMESEIQQANASLNFFDM 703 (719)
Q Consensus 674 ~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~ 703 (719)
.+-.-..+.....++..+..+...+++-+.
T Consensus 399 k~E~e~~ka~i~t~E~rL~aa~ke~eaaKa 428 (522)
T PF05701_consen 399 KEEAEQTKAAIKTAEERLEAALKEAEAAKA 428 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555443
No 27
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.85 E-value=2.2e-05 Score=94.25 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=20.2
Q ss_pred CCCchhhhHHHHHHHHH-HHHHHHHHHHHHH
Q 005010 32 SSEEKKIDTAVLQFQNQ-KLVQKLETQKVEY 61 (719)
Q Consensus 32 ~s~~~~~d~~vLqfQn~-kL~rqLe~~kre~ 61 (719)
++.+..-+| ++.++|= +||+.|..|-++.
T Consensus 57 i~~~~~~nw-~lr~~NLk~l~~~i~~yy~e~ 86 (713)
T PF05622_consen 57 IKEDVGDNW-RLRVSNLKKLLRNIKSYYQEE 86 (713)
T ss_dssp --SGGGG-S-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334444567 8899996 9999999996654
No 28
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.84 E-value=0.061 Score=61.80 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSE 369 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~e 369 (719)
+.++++++.-++..-..=..++..|+.+|-.|..++..++..+.+. +-.+.-++++.+.|..+
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E-----tllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE-----TLLRVDLQNRVQTLLEE 212 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHH
Confidence 5567777777777777777788888888888888888888877765 33334444444444333
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.83 E-value=0.075 Score=57.43 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005010 320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID 399 (719)
Q Consensus 320 l~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E 399 (719)
+.-...|..+|..|..++..++...... .+..+..+..++..++..++........++.+.+.+...+.++..+.+
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~~~~~~~----~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e 92 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELREKKGEE----VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYE 92 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhccccc----CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence 3456667788888888888888775332 133566777777778888888777777777777777777666654443
No 30
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.81 E-value=0.26 Score=63.01 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHH-HH
Q 005010 552 ARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEI-EA 630 (719)
Q Consensus 552 ~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~-~a 630 (719)
+.++|..++.+++.+...|..+.. +...+.+.-.....++..+..++...+..+...+.++..|.......+.+. ++
T Consensus 598 ~~~~ee~L~~~l~~~~~~l~~~~~--~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 675 (1201)
T PF12128_consen 598 YAASEEELRERLEQAEDQLQSAEE--RQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA 675 (1201)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445666788888888887765432 223333332334444555555555555555555555555444333333322 22
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 005010 631 YLSEIETIGQSYDDMQTQNQQLLQQITER 659 (719)
Q Consensus 631 l~~Eie~~gqA~edmq~Qn~~ll~ql~e~ 659 (719)
.-.....+..++..+..+-..+-+++...
T Consensus 676 ~~~~~~~~~~~l~~l~~~l~~~~~e~~~~ 704 (1201)
T PF12128_consen 676 KEERKEQIEEQLNELEEELKQLKQELEEL 704 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555544444443
No 31
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.79 E-value=4.9e-06 Score=101.28 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc-hhhh-cChhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhch
Q 005010 324 KGLHDGRIKVLQQLYNLQNTLKSV-KCLS-SSKAFLSVKNQLEKSKSEVFKYQAL-FEKLQVEKDNLAWRETELNMKIDL 400 (719)
Q Consensus 324 e~l~~e~~~L~~e~~~Lk~~l~~~-~~I~-~S~~yk~L~~q~~~lk~eld~~r~~-~ekLq~er~~~~~~~~E~~~k~E~ 400 (719)
..|...+..+..++..|+..+.+. .... -...|..++.++..|++-++.--.. ++.|...+-.+...+.++. +.
T Consensus 260 ~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~---e~ 336 (859)
T PF01576_consen 260 QALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQ---EQ 336 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HH
Confidence 344444444555555555555433 1111 0134445555555555555443332 3344444444444443332 11
Q ss_pred HHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHh
Q 005010 401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEAS 440 (719)
Q Consensus 401 ~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~ 440 (719)
. ..+...+..++....++-.+.+++..+++...
T Consensus 337 l-------e~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~ 369 (859)
T PF01576_consen 337 L-------EEANAKVSSLEKTKKRLQGELEDLTSELEKAQ 369 (859)
T ss_dssp ----------------------------------------
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22356677777777777777777777777643
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.21 Score=61.21 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
........++.+.+.+|.........+...+.....+.+..+..+..+++.+...+++.++.|+..+
T Consensus 401 vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~ 467 (1293)
T KOG0996|consen 401 VKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL 467 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777788877777778888888888888888888888888888888888888776554
No 33
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.71 E-value=0.18 Score=58.41 Aligned_cols=309 Identities=17% Similarity=0.162 Sum_probs=165.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 299 QRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFE 378 (719)
Q Consensus 299 ~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~e 378 (719)
+-+++-+...++.+......|-.+|-.....+.-|..+..++. +++..+-.++.....|.+.|..=-++++. .+.
T Consensus 345 q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~--~e~~~~k~~~s~~ssl~~e~~QRva~lEk---Kvq 419 (961)
T KOG4673|consen 345 QLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSV--TEDLKRKSNESEVSSLREEYHQRVATLEK---KVQ 419 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHhhcccccchHHHHHHHHHHHHH---HHH
Confidence 4446777777888888888888877666655555554333333 22332233344445677777664444443 344
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHh
Q 005010 379 KLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVS 457 (719)
Q Consensus 379 kLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E~r~Lis 457 (719)
.+-.|||+++++++-+. .+++.+.. ...+.+....+..++.+=+.|--+.-....---| ..-+.|--.|+.
T Consensus 420 a~~kERDalr~e~kslk-----~ela~~l~---~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~ 491 (961)
T KOG4673|consen 420 ALTKERDALRREQKSLK-----KELAAALL---KDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEE 491 (961)
T ss_pred HHHHhHHHHHHHHHHHH-----HHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 46899999999876552 23333332 4567777777777887777776554331111111 122233335666
Q ss_pred hcHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHH
Q 005010 458 SFPEDMSAMQRQLSKYKEAA---LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKL 534 (719)
Q Consensus 458 sl~~~i~~Lk~Ev~R~Ke~~---~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl 534 (719)
.+-+.|.-|++|..++|-.. .+..++-. .-++++......+.++...+++.+..++.....++.
T Consensus 492 K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~-------------E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qa 558 (961)
T KOG4673|consen 492 KKGELITKLQSEENKLKSILRDKEETEKLLQ-------------ETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQA 558 (961)
T ss_pred HhhhHHHHHHHHHHHHHHHhhhHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 67778888888888877431 11111110 012222233334445555555555555555555555
Q ss_pred HHHHHhh-cCCCchhHH-HHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 005010 535 ILDMYRR-ESTDSRDVL-AARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKR 612 (719)
Q Consensus 535 ~ldmy~~-~~~d~rd~~-~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~ 612 (719)
.+|-.++ .-+..|-+- ++++-+--+-.+|.+||..|..... .+-+|=.-.-.||.+|+..++++++
T Consensus 559 t~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq------------~aarrEd~~R~Ei~~LqrRlqaaE~ 626 (961)
T KOG4673|consen 559 TNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQ------------QAARREDMFRGEIEDLQRRLQAAER 626 (961)
T ss_pred hhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433 223333221 2333444455667777776643111 1123334555678888888888887
Q ss_pred hhhhhhHHhhhhHH----HHHHHHHHHHHHHHhHHHH
Q 005010 613 DMVSLSDALKSKNE----EIEAYLSEIETIGQSYDDM 645 (719)
Q Consensus 613 ~~~~l~~~l~~~~~----e~~al~~Eie~~gqA~edm 645 (719)
...+|...+-+..- ..++|-.=...-+.||+-.
T Consensus 627 R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawere 663 (961)
T KOG4673|consen 627 RCEELIQQVPETTRPLLRQIEALQETLSKAATAWERE 663 (961)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHH
Confidence 77777655444331 2233333334445677764
No 34
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.67 E-value=0.00013 Score=87.68 Aligned_cols=142 Identities=11% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 317 SHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNM 396 (719)
Q Consensus 317 ~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~ 396 (719)
..++..+.+|..+|..+..++..|+.-..+..++. .....|+.++..+. ..+..+..++.++..+......|.
T Consensus 253 ~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLe--Ee~~sLq~kl~~~E----~~~~el~~lq~e~~~Le~el~sW~- 325 (722)
T PF05557_consen 253 KEQLAHIRELEKENRRLREELKHLRQSQENVELLE--EEKRSLQRKLERLE----ELEEELAELQLENEKLEDELNSWE- 325 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 35566777788888888888888877766665444 22334444444322 222333333444444433333331
Q ss_pred hhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 005010 397 KIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKE 475 (719)
Q Consensus 397 k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke 475 (719)
+ +..... ..+.. -..|......|+.+.-......|. .+.+.++...+..+..++..+..++..++.
T Consensus 326 ---s--l~~~~~----~~~~s----Pe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~ 392 (722)
T PF05557_consen 326 ---S--LLQDIG----LEFDS----PEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEA 392 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---H--HHhcCC----CCCCC----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 00000 011333444555555555555664 466666777777777777777777766665
Q ss_pred HHH
Q 005010 476 AAL 478 (719)
Q Consensus 476 ~~~ 478 (719)
...
T Consensus 393 ~~~ 395 (722)
T PF05557_consen 393 SLE 395 (722)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 35
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.65 E-value=0.24 Score=58.30 Aligned_cols=214 Identities=14% Similarity=0.150 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhh
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC-----------KLAALRAERD 273 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~r-----------kL~~lk~e~~ 273 (719)
....+..+...++......+.+..+++.+.......+.++..|+....+++-.+..-+. +|+.+-.+..
T Consensus 103 a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~ 182 (569)
T PRK04778 103 AKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFS 182 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777777777777777777777666666554332 2222222111
Q ss_pred cccCCccccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccc---hh
Q 005010 274 VTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVL-QQLYNLQNTLKSV---KC 349 (719)
Q Consensus 274 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~-~e~~~Lk~~l~~~---~~ 349 (719)
....- +..|.+.. ..+.-..+++-.......+.++=.+-.+..... .++..|+.-.+.. .|
T Consensus 183 ~f~~l-----------~~~Gd~~~----A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy 247 (569)
T PRK04778 183 QFVEL-----------TESGDYVE----AREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGY 247 (569)
T ss_pred HHHHH-----------hcCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC
Confidence 11000 01111111 122222222323333334444444444444422 5555555444321 22
Q ss_pred hhc----ChhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhchHHHHhhhhhhhhhHHHHhh
Q 005010 350 LSS----SKAFLSVKNQLEKS-----KSEVFKYQALFEKLQVEKDNLAWRE-TELNMKIDLVDVFRRSSAVTDSKIADLG 419 (719)
Q Consensus 350 I~~----S~~yk~L~~q~~~l-----k~eld~~r~~~ekLq~er~~~~~~~-~E~~~k~E~~e~~~~~~~~~~~~i~~lE 419 (719)
... ...+..|+.++... ..+++.....+..++...+.+-..+ +|. .++.. ++.....+.
T Consensus 248 ~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~--------~A~~~---vek~~~~l~ 316 (569)
T PRK04778 248 HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREV--------KARKY---VEKNSDTLP 316 (569)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH---HHHhhHHHH
Confidence 221 23555666666662 2355666666666666666665554 222 23333 256677778
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcCCC
Q 005010 420 IEIQKQIDEKNRIEMRLEEASREPG 444 (719)
Q Consensus 420 ~~LarvR~ere~L~~e~e~~~~~~~ 444 (719)
..|..++..-..|..+++...+...
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 8888888888888888887776655
No 36
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.63 E-value=1.2e-05 Score=97.92 Aligned_cols=121 Identities=21% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005010 587 AISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKL 666 (719)
Q Consensus 587 ~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl 666 (719)
.++++.+......|.+|+..++...+....+...+...+....+|-+|++.+..+++.....=..+=..+.+.-+...-+
T Consensus 570 ~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l 649 (859)
T PF01576_consen 570 EEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNEL 649 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777788888888888888877777777777777777888888888888888776555444434443333322222
Q ss_pred HHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhhh
Q 005010 667 VLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQVCL 714 (719)
Q Consensus 667 ~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~~ 714 (719)
. ....++..+|..|+..+.++...+|-......-++|+.|-
T Consensus 650 ~-------~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kk 690 (859)
T PF01576_consen 650 T-------SQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKK 690 (859)
T ss_dssp ------------------------------------------------
T ss_pred H-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233566777778888888888887777666666666654
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.60 E-value=0.47 Score=60.10 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHh
Q 005010 48 QKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESC 99 (719)
Q Consensus 48 ~kL~rqLe~~kre~~~Le~rie~Le~rq~~~d~~L~~Vnr~W~QL~ddi~lL 99 (719)
..|..|+...++... +-.++..++.....++ +.....-|..+...+.-+
T Consensus 194 ~~L~~q~~~l~~~~e-~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ 242 (1164)
T TIGR02169 194 DEKRQQLERLRRERE-KAERYQALLKEKREYE--GYELLKEKEALERQKEAI 242 (1164)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 355555544443322 3333444443332222 222333444444444433
No 38
>PRK01156 chromosome segregation protein; Provisional
Probab=97.48 E-value=0.56 Score=58.15 Aligned_cols=27 Identities=7% Similarity=0.261 Sum_probs=15.6
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 005010 450 AEFRALVSSFPEDMSAMQRQLSKYKEA 476 (719)
Q Consensus 450 ~E~r~Lissl~~~i~~Lk~Ev~R~Ke~ 476 (719)
.....+++....++..+..++..++..
T Consensus 465 e~~~e~i~~~~~~i~~l~~~i~~l~~~ 491 (895)
T PRK01156 465 EKSNHIINHYNEKKSRLEEKIREIEIE 491 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666555443
No 39
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.47 E-value=0.42 Score=56.33 Aligned_cols=166 Identities=16% Similarity=0.084 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccc
Q 005010 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPV 282 (719)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~ 282 (719)
..+......+++++..|+.++..+..+.+.+++..+..+..+++-+.+||.+..++.+.+.-|-.-.
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~------------- 161 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKA------------- 161 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh-------------
Confidence 3466677888899999999999999999999999999999999999999999999988876551100
Q ss_pred ccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhh-------c--
Q 005010 283 LNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK-SVKCLS-------S-- 352 (719)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~-~~~~I~-------~-- 352 (719)
......+++|.....++.++...=-.-|.+...++..+...+.+++.++. ++..+. .
T Consensus 162 -------------~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq 228 (1265)
T KOG0976|consen 162 -------------HDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQ 228 (1265)
T ss_pred -------------HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 01112234444444444443333333444444555555555555555544 110000 0
Q ss_pred --ChhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 353 --SKAFLSVKNQLEK---SKSEVFKYQALFEKLQVEKDNLAWRETEL 394 (719)
Q Consensus 353 --S~~yk~L~~q~~~---lk~eld~~r~~~ekLq~er~~~~~~~~E~ 394 (719)
+..-.+|.+|++. +++.....++....||...+.+.....+|
T Consensus 229 ~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~ql 275 (1265)
T KOG0976|consen 229 KVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQL 275 (1265)
T ss_pred HHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122244444444 45555566666666666665555554444
No 40
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.39 E-value=0.48 Score=55.20 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cc-hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 306 ESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK----SV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKL 380 (719)
Q Consensus 306 ~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~----~~-~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekL 380 (719)
..+++-.+..-+.=+.+|....+++..+..++..+-.... .. +.+ .....-...+..|..++.++++.++..
T Consensus 115 k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~---~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 115 KAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAV---SAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555433211 11 111 122333444555666666666665444
Q ss_pred HH
Q 005010 381 QV 382 (719)
Q Consensus 381 q~ 382 (719)
..
T Consensus 192 ~~ 193 (522)
T PF05701_consen 192 KL 193 (522)
T ss_pred HH
Confidence 33
No 41
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.36 E-value=0.54 Score=55.25 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHH
Q 005010 512 VAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQ 591 (719)
Q Consensus 512 ~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~ 591 (719)
.+.++.+...+....+.+.++.-.|.- ++..|.+|+..+..++..|....+......+=-.=.....
T Consensus 378 ~~~l~~~~~~l~~ie~~q~~~~~~l~~-------------L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~ 444 (560)
T PF06160_consen 378 QEELEEIEEQLEEIEEEQEEINESLQS-------------LRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLD 444 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 344555555555566655555444333 4456777787777777777544331111100000013455
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHH
Q 005010 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639 (719)
Q Consensus 592 kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~g 639 (719)
.+..+..+|..|...|....=++..+...+.......+.|..+.+.+-
T Consensus 445 ~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li 492 (560)
T PF06160_consen 445 YFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELI 492 (560)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888877777777777777777777777766543
No 42
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.29 E-value=1.1 Score=57.25 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=20.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHH
Q 005010 589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIE 636 (719)
Q Consensus 589 ~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie 636 (719)
.+.++...+.++..|...+......+..+...+.+.......|..+++
T Consensus 735 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 782 (1163)
T COG1196 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555554444444444444444444444333333333333
No 43
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.16 E-value=0.97 Score=54.15 Aligned_cols=127 Identities=14% Similarity=0.194 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhcccchhhhcChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhh
Q 005010 331 IKVLQQLYNLQNTLKSVKCLSSSKAFL-SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSA 409 (719)
Q Consensus 331 ~~L~~e~~~Lk~~l~~~~~I~~S~~yk-~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~ 409 (719)
..-+.|+++++..++.. ..|+ .+..|...|..++.+.|.+...+|.-++.|...+.+.- +..+++-=-..
T Consensus 251 k~Kl~Elekmkiqleql------qEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a---d~iEmaTldKE 321 (1243)
T KOG0971|consen 251 KAKLKELEKMKIQLEQL------QEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA---DAIEMATLDKE 321 (1243)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHH
Confidence 34456677777766654 2232 45566666888888888888888888877776654442 33333211111
Q ss_pred hhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 005010 410 VTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG------RKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477 (719)
Q Consensus 410 ~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~------k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~ 477 (719)
-++.+...|-.++--+..--|+|..++|..+++.+ ...+.= ++.+|+.+..|+|++.
T Consensus 322 mAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~-----------qfkqlEqqN~rLKdal 384 (1243)
T KOG0971|consen 322 MAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSY-----------QFKQLEQQNARLKDAL 384 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchH-----------HHHHHHHHHHHHHHHH
Confidence 12333334444444444455666666666443322 112222 3455666666666663
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.16 E-value=0.51 Score=50.95 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=37.0
Q ss_pred HHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHh
Q 005010 649 NQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699 (719)
Q Consensus 649 n~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e 699 (719)
...+=..|..++.-..++-.+-...-.-|..|+.-|-.|+.+|.+-...+|
T Consensus 257 ~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 257 REEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 333444566666667777666666777788899999999999988877665
No 45
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.08 E-value=0.0014 Score=78.85 Aligned_cols=165 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccch-hhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKSVK-CLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID 399 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~~~-~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E 399 (719)
.++..|+.++..|..++..|+..+...+ .+. .+...+..++.++++.+++++.++.++...++.+...+.++ ..+
T Consensus 200 ~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~l--e~e 275 (713)
T PF05622_consen 200 KQISDLQEEKESLQSENEELQERLSQLEGSSE--EPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEEL--EKE 275 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHhhhhhhhhhcccCCCCCCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3455677777777777777776655433 111 22334445555666666666666655555555554443221 112
Q ss_pred hHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHH-------------hcCCCC-hhHHHHHHHHHhhcHHHHHH
Q 005010 400 LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA-------------SREPGR-KEIIAEFRALVSSFPEDMSA 465 (719)
Q Consensus 400 ~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~-------------~~~~~k-~~~~~E~r~Lissl~~~i~~ 465 (719)
..++.++. ..+...-.....+|.+.|.|+-+-..+ .++.+- +.-+.+++.-...+...+.+
T Consensus 276 i~~L~q~~-----~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~ 350 (713)
T PF05622_consen 276 IDELRQEN-----EELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAM 350 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111 112222233344555555554443331 111111 22233333344455566678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005010 466 MQRQLSKYKEAALDIHILRADVLSLTNVL 494 (719)
Q Consensus 466 Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l 494 (719)
|+.++.++......+..++.++.++...+
T Consensus 351 LEeel~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 351 LEEELKKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777777777777666555
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.03 E-value=0.23 Score=59.49 Aligned_cols=112 Identities=14% Similarity=0.234 Sum_probs=77.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005010 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV 667 (719)
Q Consensus 588 ~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~ 667 (719)
.|.+|...+|.|+..||..|...+..+..|+..+.....-...=-.|+|++--|.-.||+.|.+|=.-|+.-
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaE-------- 613 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAE-------- 613 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHH--------
Confidence 477888999999999999999998888888876632222101113478888889999999999997766542
Q ss_pred HHhHhhh--hHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHH
Q 005010 668 LEGVRAR--QLQDALLMDKHMMESEIQQANASLNFFDMKAARI 708 (719)
Q Consensus 668 ~E~~ka~--q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~ 708 (719)
-|||-+ ..+-.++++.+.++.++..=...|.-++.+|..+
T Consensus 614 -triKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 614 -TRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233322 1233455666666677777777777777777654
No 47
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=1.7 Score=53.65 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV 347 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~ 347 (719)
+..+..++.++-..-..|...|..+......|.++++..+-+..+.
T Consensus 386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~ 431 (1293)
T KOG0996|consen 386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSEL 431 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555555555555566666667777777777777776666665544
No 48
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.95 E-value=1.5 Score=52.58 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (719)
Q Consensus 201 ~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL 265 (719)
.+.+|..||-.||..++.| +.-.+++..++-.+...+.++.-|..++|++.-=-+-+++.|
T Consensus 98 dyselEeENislQKqvs~L----k~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~ql 158 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVL----KQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQL 158 (717)
T ss_pred hhHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999988 444466777755555556666666666666554444444444
No 49
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.95 E-value=0.7 Score=49.34 Aligned_cols=243 Identities=16% Similarity=0.159 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccc
Q 005010 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPV 282 (719)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~ 282 (719)
..+..++..+++.-+.|.++-+.|..+.+.+++.....-.++.+++...+++-..+......+..++...+...+++.|.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~ 109 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSI 109 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCH
Confidence 34777888999999999999999999999999999999999999999999999999998888877775544331111000
Q ss_pred ccC-----------CCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hh
Q 005010 283 LNL-----------GNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KC 349 (719)
Q Consensus 283 ~~~-----------~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~--~~ 349 (719)
.+. -+..++ +..-..+-..+.++......+...+ +.+.....|..++..++...++. .+
T Consensus 110 ~~ler~i~~Le~~~~T~~L~-------~e~E~~lvq~I~~L~k~le~~~k~~-e~~~~~~el~aei~~lk~~~~e~~eki 181 (294)
T COG1340 110 KSLEREIERLEKKQQTSVLT-------PEEERELVQKIKELRKELEDAKKAL-EENEKLKELKAEIDELKKKAREIHEKI 181 (294)
T ss_pred HHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000001 0101112222222222222222111 12333334445555555554433 11
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHH--HHHh
Q 005010 350 LSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQ--KQID 427 (719)
Q Consensus 350 I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~La--rvR~ 427 (719)
..=+..-+....++-.+-...|++|..+..+..+...+...+.+.. +........+-.++..+..|..... +.+.
T Consensus 182 ~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~---ee~~~~~~elre~~k~ik~l~~~~~~~~~~~ 258 (294)
T COG1340 182 QELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELH---EEFRNLQNELRELEKKIKALRAKEKAAKRRE 258 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222344455555566667777777767666666666654432 2222222222333444443333222 2445
Q ss_pred HHHHHHHHHHHH--hcCCCChhHHHHHHHHH
Q 005010 428 EKNRIEMRLEEA--SREPGRKEIIAEFRALV 456 (719)
Q Consensus 428 ere~L~~e~e~~--~~~~~k~~~~~E~r~Li 456 (719)
.++.+.-+-++. +=..|.+=++.++.-|.
T Consensus 259 ~~ee~kera~ei~EKfk~GekLt~EelllLq 289 (294)
T COG1340 259 KREELKERAEEIYEKFKRGEKLTTEELLLLQ 289 (294)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 555444343332 22233346666766664
No 50
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.79 E-value=1.9 Score=51.62 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT 343 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~ 343 (719)
...|..++.|++.--..-+++--+|.+||..|++++..|+--
T Consensus 78 ~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 78 RKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 355788899999999999999999999999999999998854
No 51
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.78 E-value=0.00091 Score=80.58 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=0.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005010 457 SSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLE 495 (719)
Q Consensus 457 ssl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~ 495 (719)
..|...|..+..++.+|+....-+.-|..++.+|...+.
T Consensus 260 ~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~ 298 (722)
T PF05557_consen 260 RELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLE 298 (722)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666555553
No 52
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.76 E-value=0.71 Score=46.24 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCCCCCC
Q 005010 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVA 291 (719)
Q Consensus 212 Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~~~~~ 291 (719)
|-+.+.+|+.-++.+..+...++..+...+.-...|..++.++...+-.+.+-+ .++.
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal----------~~aK------------ 63 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL----------QKAK------------ 63 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH------------
Confidence 334455555555555555555555555556666666666666555544432111 1110
Q ss_pred CCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005010 292 GDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (719)
Q Consensus 292 ~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~ 345 (719)
....++++|+.....+.+....-+.+...+..+++.|..++..|+.+..
T Consensus 64 -----~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~ 112 (193)
T PF14662_consen 64 -----ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG 112 (193)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0012377788888888888888888888888888888888887777644
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.72 E-value=0.61 Score=48.69 Aligned_cols=163 Identities=14% Similarity=0.140 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCC
Q 005010 364 EKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREP 443 (719)
Q Consensus 364 ~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~ 443 (719)
..++.+++.+...+..++............+. .+... +..++..+|.+|.++-.-......++..+....
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE--~e~~~--------l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~ 73 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAE--AEVAS--------LQRRIQLLEEELERAEERLEEATEKLEEAEKRA 73 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--------HHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444443332221 12222 235555555555555555555555555533222
Q ss_pred CC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHH
Q 005010 444 GR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMV 522 (719)
Q Consensus 444 ~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l 522 (719)
.. .....-|.+=..+-..+|..|+.++...+..+.+...--. .+...+.....++.....++.....-|..|..++
T Consensus 74 de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~---E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 74 DESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYE---EVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 20 1122222222334456777777777555555444444222 2222222222234444455566677778888888
Q ss_pred HhhhhhHHHHHHHHHHH
Q 005010 523 QDLTDSNLELKLILDMY 539 (719)
Q Consensus 523 ~ka~~~~~elkl~ldmy 539 (719)
....+..+.|.....-|
T Consensus 151 ~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 151 KSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhh
Confidence 87777766666554433
No 54
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.59 E-value=1.4 Score=47.39 Aligned_cols=236 Identities=16% Similarity=0.146 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cc-hhhhcChhHHHHHH---HHHHHHHHH-
Q 005010 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK-------SV-KCLSSSKAFLSVKN---QLEKSKSEV- 370 (719)
Q Consensus 303 e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~-------~~-~~I~~S~~yk~L~~---q~~~lk~el- 370 (719)
+.|...+..++.-...-..+|...+.....|..++..|+...- .. +||.++ .++-|+. +-..|--.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~-LlKkl~~l~keKe~L~~~~e 101 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNT-LLKKLQQLKKEKETLALKYE 101 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666566566777777777777777776665433 22 777744 3443322 222211111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcC
Q 005010 371 -------FKYQALFEKLQVEKDNLAWRETELNMKID-LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASRE 442 (719)
Q Consensus 371 -------d~~r~~~ekLq~er~~~~~~~~E~~~k~E-~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~ 442 (719)
..+...+.+|+.++..+-..+ +.. -| .+.--++.+..++.+...+...|-++|.++-+|...++
T Consensus 102 ~EEE~ltn~L~rkl~qLr~EK~~lE~~L-e~E--qE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE----- 173 (310)
T PF09755_consen 102 QEEEFLTNDLSRKLNQLRQEKVELENQL-EQE--QEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE----- 173 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH-----
Confidence 112223344444444443332 110 01 01111222222333334444455555655555554444
Q ss_pred CCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHH
Q 005010 443 PGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMV 522 (719)
Q Consensus 443 ~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l 522 (719)
.|=..||+.|.++|..|..+.+.+... |..-+....++-... ....-.+........|+.|+.++
T Consensus 174 -------~EQE~lvN~L~Kqm~~l~~eKr~Lq~~------l~~~~s~~~s~~d~~--~~~~~~Dt~e~~~shI~~Lr~EV 238 (310)
T PF09755_consen 174 -------QEQEALVNRLWKQMDKLEAEKRRLQEK------LEQPVSAPPSPRDTV--NVSEENDTAERLSSHIRSLRQEV 238 (310)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHH------HccccCCCCCcchHH--hhcccCCchhHHHHHHHHHHHHH
Confidence 344569999999999999999888766 221111111110000 00000011122235566666665
Q ss_pred HhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 005010 523 QDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLD 571 (719)
Q Consensus 523 ~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~ 571 (719)
..+.+. |--.... ..-...++..-|+.++.++..|+..|.
T Consensus 239 ~RLR~q-------L~~sq~e--~~~k~~~~~~eek~ireEN~rLqr~L~ 278 (310)
T PF09755_consen 239 SRLRQQ-------LAASQQE--HSEKMAQYLQEEKEIREENRRLQRKLQ 278 (310)
T ss_pred HHHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555442 2222221 233455666678889999999998875
No 55
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.56 E-value=1.3 Score=48.97 Aligned_cols=128 Identities=23% Similarity=0.196 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHH----------HHHHHH-HHHHHHHHHHhhhhhhcHHHH
Q 005010 510 DQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLA----------ARDLEY-KAWAHVHSLKSSLDEQSLELR 578 (719)
Q Consensus 510 ~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~----------~~~~E~-~~~ae~~~Lk~~L~e~~~~~r 578 (719)
+++..+..|=..+.++.+...=|+..||---+.+.-+|||.. .+.... ++++||+.||..|....+..-
T Consensus 198 EqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ 277 (552)
T KOG2129|consen 198 EQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQ 277 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777778888788888999972 222222 568999999998854333221
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh----hhhhHHhhhhHHHHHHHHHHHHHHHHhH
Q 005010 579 VKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDM----VSLSDALKSKNEEIEAYLSEIETIGQSY 642 (719)
Q Consensus 579 vk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~----~~l~~~l~~~~~e~~al~~Eie~~gqA~ 642 (719)
.|.+. +.+.=..-+++.+.|+.+|...-..- .-|++.-.+.+-.+++||+|+=..|-.|
T Consensus 278 ek~~q-----y~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~g~s~ 340 (552)
T KOG2129|consen 278 EKLMQ-----YRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDFGDSV 340 (552)
T ss_pred HHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCce
Confidence 11110 01111233455556665554432222 1245556667788899999987666544
No 56
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.52 E-value=2.6 Score=49.48 Aligned_cols=295 Identities=16% Similarity=0.288 Sum_probs=151.3
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT 491 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~ 491 (719)
+..+...-..+.++..+.+.-.-++..++..-. ..+.+|+.-|.+|++ .|..|..|++.--..+..+-.++..-.
T Consensus 316 e~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s--~~v~e~qtti~~L~~---lL~~Eqqr~~~~ed~lk~l~~eLqkks 390 (786)
T PF05483_consen 316 EEDLQQATKTLIQLTEEKEAQMEELNKAKAQHS--FVVTELQTTICNLKE---LLTTEQQRLKKNEDQLKILTMELQKKS 390 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 344555566677777777655555555444433 566777777777664 455666666654444555554444333
Q ss_pred HHHHhhh-----h--hhHHhhhcchhHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCch-hHHHHHHHHHHHH
Q 005010 492 NVLERKV-----K--ECETLLASSADQV---AEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSR-DVLAARDLEYKAW 560 (719)
Q Consensus 492 ~~l~~k~-----~--e~~~l~~~~~~~~---~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~r-d~~~~~~~E~~~~ 560 (719)
+-+...+ . ++..|...+.... +.-+.+..-...++....+|..+|-.....-.|-. -+..+..+|..-.
T Consensus 391 ~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~ys 470 (786)
T PF05483_consen 391 SELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYS 470 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHH
Confidence 3332111 1 1233332222211 22223333333445555555555554433211111 1223455777788
Q ss_pred HHHHHHHhhhhhhcH---HHHHHHHHH----HHHHHHHH------HHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHH
Q 005010 561 AHVHSLKSSLDEQSL---ELRVKTAIE----AEAISQQR------LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEE 627 (719)
Q Consensus 561 ae~~~Lk~~L~e~~~---~~rvk~~~e----~e~~~~~k------l~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e 627 (719)
.+|..|+..|....+ ++-+. .+. -..-+|.. +....+.|..-..+-....+.+..|...-.....+
T Consensus 471 kQVeeLKtELE~EkLKN~ELt~~-~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrne 549 (786)
T PF05483_consen 471 KQVEELKTELEQEKLKNTELTVN-CNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNE 549 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998864322 11111 111 11112211 22333444444444444444444444433334445
Q ss_pred HHHHHHHHHHHHHhHHH---HHHHHHHHHHHhhhhhhhhhHHHHHhHh--------hhhHHHHHHHhHHHHHHHHHHHHh
Q 005010 628 IEAYLSEIETIGQSYDD---MQTQNQQLLQQITERDDYNIKLVLEGVR--------ARQLQDALLMDKHMMESEIQQANA 696 (719)
Q Consensus 628 ~~al~~Eie~~gqA~ed---mq~Qn~~ll~ql~e~dd~n~kl~~E~~k--------a~q~~~~l~~ek~~l~~~~~~~~~ 696 (719)
.+.+-.|+...|.-.+. --+-|.|-+.--..+.|..+|..-.++. .+-.+..|..+..+|..++..-..
T Consensus 550 les~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~k 629 (786)
T PF05483_consen 550 LESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESK 629 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554433 2345666666556666666766644442 123345578888888888888888
Q ss_pred hHhhHHHHHHHHHhhh
Q 005010 697 SLNFFDMKAARIENQV 712 (719)
Q Consensus 697 ~~e~~~~~~~~~e~~~ 712 (719)
+...+..+|.+|+..+
T Consensus 630 q~~~~eikVn~L~~E~ 645 (786)
T PF05483_consen 630 QSNVYEIKVNKLQEEL 645 (786)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887654
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.45 E-value=2.6 Score=48.84 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=16.9
Q ss_pred hhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 411 TDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 411 ~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
.....+.++.++.+++.+-++|+-.++.
T Consensus 104 ~~~~ra~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 104 TARERAKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445556666666666666666666665
No 58
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.44 E-value=3.3 Score=49.91 Aligned_cols=84 Identities=18% Similarity=0.164 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hh-hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 308 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KC-LSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEK 384 (719)
Q Consensus 308 eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~--~~-I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er 384 (719)
+-|-+.+-|..--.|++.+.+.+-.|.-.++-||.+..+- +. ..+|-+|+.|..|+..|+..+-++|.+. -.++
T Consensus 319 dKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDls---A~ek 395 (1243)
T KOG0971|consen 319 DKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLS---ASEK 395 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcc---hHHH
Confidence 3344555667777889999999999999999999998865 33 7778999999999999999999999883 4444
Q ss_pred HHHHHHHHHH
Q 005010 385 DNLAWRETEL 394 (719)
Q Consensus 385 ~~~~~~~~E~ 394 (719)
..+.+-.+|+
T Consensus 396 ~d~qK~~kel 405 (1243)
T KOG0971|consen 396 QDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHH
Confidence 4444443444
No 59
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.33 E-value=0.71 Score=48.20 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLS-SSKAFLSVKNQLEKSKSEVFKYQALFEK 379 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~-~~I~-~S~~yk~L~~q~~~lk~eld~~r~~~ek 379 (719)
+..|+..+.+++..+...-.-+++....+..+...+......+... .-|. =-..+..+.+.+..+......+-...+.
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~ 173 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDE 173 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 7778888888888887777777777777777776666666555433 1111 0012233333333344444444444444
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCC
Q 005010 380 LQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREP 443 (719)
Q Consensus 380 Lq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~ 443 (719)
+......+..++++....++ .+-+.+..++.+|..|+..|...+..|..+..++.++..+-
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae---~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAE---FAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555432222 23334455688888899999988888888888887765443
No 60
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.32 E-value=3.5 Score=48.93 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHH
Q 005010 558 KAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEA 630 (719)
Q Consensus 558 ~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~a 630 (719)
|+-+++..||.+|.+..-. .|+.-|+ ..+.--+|....--..+|..++...+..+..++..++.|.++...
T Consensus 157 RAlsQN~eLK~QL~Elq~~-Fv~ltne-~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~ 227 (617)
T PF15070_consen 157 RALSQNRELKEQLAELQDA-FVKLTNE-NMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQS 227 (617)
T ss_pred HHHHhHHHHHHHHHHHHHH-HHHHHHh-hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4666677777777654321 2332222 111112222222222345555555555555555555555444333
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.27 E-value=1.3 Score=53.34 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=58.4
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHH-----
Q 005010 507 SSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTD-SRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVK----- 580 (719)
Q Consensus 507 ~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d-~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk----- 580 (719)
+-..-+.+++.|+.+++..++....|+.-+.-|+...++ +.|.-.||.+=.-++.....|...|.. |-|+|
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsa---EtriKldLfs 622 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSA---ETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHH
Confidence 334557889999999999998888888765433332122 344444444444455555566665532 22332
Q ss_pred HHHHHHH---HHHHHHHhHHHHHHHHHHHHHHH
Q 005010 581 TAIEAEA---ISQQRLAAAEAEIADMRQKLEAF 610 (719)
Q Consensus 581 ~~~e~e~---~~~~kl~~~e~ei~~Lr~~l~~~ 610 (719)
++-+|.+ .++..|...+.||.+|..++...
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 34445556677777777776654
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.27 E-value=6.4 Score=51.40 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=47.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHh
Q 005010 620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699 (719)
Q Consensus 620 ~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e 699 (719)
.+....++-..-+++.+.+..+|-..|+.-.+|--|-.+-.+-.-.+|.---..--....+..++..++.++..+..+++
T Consensus 583 ~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~ 662 (1486)
T PRK04863 583 ALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIE 662 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666788888888889888888888666655555444444422222222334455555555555555555555
Q ss_pred h
Q 005010 700 F 700 (719)
Q Consensus 700 ~ 700 (719)
.
T Consensus 663 ~ 663 (1486)
T PRK04863 663 R 663 (1486)
T ss_pred h
Confidence 4
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.18 E-value=3.8 Score=47.92 Aligned_cols=111 Identities=8% Similarity=0.079 Sum_probs=66.0
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHH
Q 005010 151 QMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTREL 230 (719)
Q Consensus 151 ~~e~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~~~~d~~~~~~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~ 230 (719)
.+...+..+.......+..+...+..+....+.+...+... .......+..++..++.+..+...+..++
T Consensus 167 ~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~----------~~~~~~~i~~l~~e~~~l~~~~~~l~~~l 236 (562)
T PHA02562 167 EMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQ----------RKKNGENIARKQNKYDELVEEAKTIKAEI 236 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566665555555444443332222211 11233456677777777777777777777
Q ss_pred HhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 231 QSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 231 ~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
..+++.+......+..+.+.|.++..++..+...+..+...
T Consensus 237 ~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 237 EELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666666667777777777777777666543
No 64
>PRK11637 AmiB activator; Provisional
Probab=96.09 E-value=1.6 Score=49.46 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 315 QASHQLLELKGLHDGRIKVLQQLYNLQNT 343 (719)
Q Consensus 315 la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~ 343 (719)
++..+..-|+.+......|......|...
T Consensus 164 i~~~d~~~l~~l~~~~~~L~~~k~~le~~ 192 (428)
T PRK11637 164 LNQARQETIAELKQTREELAAQKAELEEK 192 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444444444433
No 65
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.02 E-value=4.4 Score=47.23 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHH
Q 005010 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE-TELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRL 436 (719)
Q Consensus 358 ~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~-~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~ 436 (719)
.++.|++.+..-+.......+..|.++..+.... .|...+.+...+.......+.++|-.++. +.+.|+-.+
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~-------e~e~L~~ql 265 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLER-------EVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 4455555555555555555555566666655552 44444444444444444444444444443 344444444
Q ss_pred HHHhcCCC--ChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHH
Q 005010 437 EEASREPG--RKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA-ALDIHILRADVLSLTNVLERKVKECETLLASSADQVA 513 (719)
Q Consensus 437 e~~~~~~~--k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~-~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~ 513 (719)
.-+++... +.|.+.-....+.+....|.+|-.++.+++.+ +.+.....+.+.++...+..+..++..+...+....
T Consensus 266 ~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~s- 344 (629)
T KOG0963|consen 266 AKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRS- 344 (629)
T ss_pred HhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence 44444443 34778888888888999999999999999854 455666667777777666665555444444444332
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchh--------HHHHHHHHHHHHHHHHHHHhhhhh
Q 005010 514 EIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRD--------VLAARDLEYKAWAHVHSLKSSLDE 572 (719)
Q Consensus 514 ~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd--------~~~~~~~E~~~~ae~~~Lk~~L~e 572 (719)
....+|.++.- +-.|-=+.|.+.-| =.-+...++++..++..||.....
T Consensus 345 DYeeIK~ELsi----------Lk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~ 401 (629)
T KOG0963|consen 345 DYEEIKKELSI----------LKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSG 401 (629)
T ss_pred cHHHHHHHHHH----------HHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccc
Confidence 22333333332 22332222222221 235778888999999999887643
No 66
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.82 E-value=6.9 Score=47.93 Aligned_cols=224 Identities=16% Similarity=0.212 Sum_probs=123.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCC-C----------CCCC--CCCccchhhhhhhH
Q 005010 239 KDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLG-N----------KHVA--GDRVRDEQRDLRDM 305 (719)
Q Consensus 239 ~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~-~----------~~~~--~~~~~~~~~~~e~L 305 (719)
.....+..|...+.....++...++++..+..++++..|..+...+.. . ++.. .++......+.+.+
T Consensus 255 e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i 334 (1174)
T KOG0933|consen 255 EMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEI 334 (1174)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 336666667777777777777777777666655555555443211110 0 0000 00001111235667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cc-hhhhcC-hhHHHHHHHHHHHHHHHHHHHHH
Q 005010 306 ESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK-------SV-KCLSSS-KAFLSVKNQLEKSKSEVFKYQAL 376 (719)
Q Consensus 306 ~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~-------~~-~~I~~S-~~yk~L~~q~~~lk~eld~~r~~ 376 (719)
...+++.+.....+-..+.+....+..+.+..+.+...+. .+ .-+.++ ..-.+|.+|+...+.++-.++..
T Consensus 335 ~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~ 414 (1174)
T KOG0933|consen 335 RKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTE 414 (1174)
T ss_pred HHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777744444444444444433333 22 111111 24678888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005010 377 FEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALV 456 (719)
Q Consensus 377 ~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Li 456 (719)
.........-.+.+++.. +.+. ++...+.......+..+-.+.|.|+..+....-+.++ ...++.=.
T Consensus 415 ~k~a~~k~e~~~~elk~~--e~e~--------~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~---~e~l~q~~ 481 (1174)
T KOG0933|consen 415 IKQAKLKLEHLRKELKLR--EGEL--------ATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ---EEALKQRR 481 (1174)
T ss_pred HHHHHHHHHHHHHHHHhh--hhHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch---HHHHHHHH
Confidence 655554443334333221 1111 1123444555556666777777777777776555553 23444445
Q ss_pred hhcHHHHHHHHHHHHHHHH
Q 005010 457 SSFPEDMSAMQRQLSKYKE 475 (719)
Q Consensus 457 ssl~~~i~~Lk~Ev~R~Ke 475 (719)
..|..+++.|+.++.++..
T Consensus 482 ~~l~~~~~~lk~~~~~l~a 500 (1174)
T KOG0933|consen 482 AKLHEDIGRLKDELDRLLA 500 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5777888888888777654
No 67
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.77 E-value=3.2 Score=44.80 Aligned_cols=144 Identities=17% Similarity=0.257 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHH
Q 005010 354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIE 433 (719)
Q Consensus 354 ~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~ 433 (719)
..+..|+..+..|+.+|..+|.++..|..+-..+-.++..++ . ++.++ ...+..+|..|-..|++...+.....
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv--~---dcv~Q-L~~An~qia~LseELa~k~Ee~~rQQ 233 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLV--L---DCVKQ-LSEANQQIASLSEELARKTEENRRQQ 233 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHH--H---HHHHH-hhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999998877753332 2 22333 24567888888888877655544333
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHH
Q 005010 434 MRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVA 513 (719)
Q Consensus 434 ~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~ 513 (719)
-++.. |..++.-|+ .|+|.-..+...|..-+......-...+.|+..+.++|++...
T Consensus 234 EEIt~--------------------LlsqivdlQ---~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~ 290 (306)
T PF04849_consen 234 EEITS--------------------LLSQIVDLQ---QRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMA 290 (306)
T ss_pred HHHHH--------------------HHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 222222222 2233333333333333222222222223345556666666666
Q ss_pred HHHHHHHHHHhhh
Q 005010 514 EIHKLQAMVQDLT 526 (719)
Q Consensus 514 ~ik~Lk~~l~ka~ 526 (719)
...+.+.+++++.
T Consensus 291 mL~EaQEElk~lR 303 (306)
T PF04849_consen 291 MLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666665544
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.75 E-value=5.7 Score=46.41 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhh
Q 005010 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLT 526 (719)
Q Consensus 447 ~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~ 526 (719)
..+.+++..+..+......++.++.++++....+ +.++.++ ...+++++..+.++.
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l---~~~i~~~---------------------~~~L~~l~~~~~~~~ 268 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNL---VMDIEDP---------------------SAALNKLNTAAAKIK 268 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccccH---------------------HHHHHHHHHHHHHHH
Confidence 3466666667777777777777776665553222 2222222 233445555555555
Q ss_pred hhHHHHHHHHHHHh
Q 005010 527 DSNLELKLILDMYR 540 (719)
Q Consensus 527 ~~~~elkl~ldmy~ 540 (719)
.....++-.+.+|+
T Consensus 269 ~~l~~~~~~~~~~~ 282 (562)
T PHA02562 269 SKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555666666663
No 69
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.71 E-value=6.5 Score=46.88 Aligned_cols=357 Identities=14% Similarity=0.120 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 005010 322 ELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLV 401 (719)
Q Consensus 322 ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~ 401 (719)
+|..|+...+.+--+.+.||.. .+-+++++..-+.+++...+.+.+|..+.+++...| |+ + .+
T Consensus 107 QiriLQn~c~~lE~ekq~lQ~t------------i~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eI--f~-~--~~ 169 (1265)
T KOG0976|consen 107 QIRILQNKCLRLEMEKQKLQDT------------IQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDI--FM-I--GE 169 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH--HH-H--HH
Confidence 4444444444444444444443 247788888888999999999999998888887775 21 1 11
Q ss_pred HHH--hhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHHHHHHH----------hhcHHHHHHHHH
Q 005010 402 DVF--RRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALV----------SSFPEDMSAMQR 468 (719)
Q Consensus 402 e~~--~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E~r~Li----------ssl~~~i~~Lk~ 468 (719)
++. ...+...+.+...+=.+.++.-+.-+.+.-+|.+..-.+.+ --...+-.++- ++...-+..++.
T Consensus 170 ~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk 249 (1265)
T KOG0976|consen 170 DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRK 249 (1265)
T ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhh
Confidence 211 11222233333333334444444444444444443333321 11111112221 122222333334
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchh
Q 005010 469 QLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRD 548 (719)
Q Consensus 469 Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd 548 (719)
.+.++++....+..+..++..-...+..+ ...|.+.+..-...|+.++.++..+++... .-.+-+...+-
T Consensus 250 ~~s~i~E~d~~lq~sak~ieE~m~qlk~k---ns~L~~ElSqkeelVk~~qeeLd~lkqt~t-------~a~gdseqatk 319 (1265)
T KOG0976|consen 250 TCSMIEEQDMDLQASAKEIEEKMRQLKAK---NSVLGDELSQKEELVKELQEELDTLKQTRT-------RADGDSEQATK 319 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-------HhhccHHHHHH
Confidence 44444544444444444443333333222 123334444555667777777766666421 11121223332
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhhhhcH---------HHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 005010 549 VLAARDLE-YKAWAHVHSLKSSLDEQSL---------ELRVKTAIEAEA---ISQQRLAAAEAEIADMRQKLEAFKRDMV 615 (719)
Q Consensus 549 ~~~~~~~E-~~~~ae~~~Lk~~L~e~~~---------~~rvk~~~e~e~---~~~~kl~~~e~ei~~Lr~~l~~~~~~~~ 615 (719)
+...| .++..+..+++..|-+..+ ...-|..+.++. ..++++...+.++..|-...+....++.
T Consensus 320 ---ylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 320 ---YLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233 3677777777777643222 111222233332 3344555555555544444444444444
Q ss_pred hhhHHhh---hhHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHhhhhhhhh-------hHHHHHhHhhhhHHH
Q 005010 616 SLSDALK---SKNEEIEAYLSEI-------ETIGQSYDDMQTQNQQLLQQITERDDYN-------IKLVLEGVRARQLQD 678 (719)
Q Consensus 616 ~l~~~l~---~~~~e~~al~~Ei-------e~~gqA~edmq~Qn~~ll~ql~e~dd~n-------~kl~~E~~ka~q~~~ 678 (719)
.++-.++ ..+..-++..+|+ +.+|.-.-+.+-|-.. ++-|.+...-- --=|.++|.+.+-.
T Consensus 397 elKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~-fk~Lke~aegsrrraIeQcnemv~rir~l~~s- 474 (1265)
T KOG0976|consen 397 ELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSN-FKVLKEHAEGSRRRAIEQCNEMVDRIRALMDS- 474 (1265)
T ss_pred HHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh-HHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhC-
Confidence 4443222 2223344444443 3333333333222211 12222221110 00233444433221
Q ss_pred HHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhh
Q 005010 679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQV 712 (719)
Q Consensus 679 ~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~ 712 (719)
.+-+..++.+..-++...++|+++|.-++|..
T Consensus 475 --le~qrKVeqe~emlKaen~rqakkiefmkEei 506 (1265)
T KOG0976|consen 475 --LEKQRKVEQEYEMLKAENERQAKKIEFMKEEI 506 (1265)
T ss_pred --hhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333455666677777788888887777643
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.69 E-value=6.3 Score=46.52 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq 381 (719)
|+.++...+ .+.+.++.+++.+-.+-..... .--|.-.+..+..+...++.+...+..+.
T Consensus 66 f~~w~~~~~---~i~~~~~~~ie~~l~~ae~~~~-----------------~~~f~~a~~~~~~~~~~l~~~e~~~~~i~ 125 (569)
T PRK04778 66 FEEWRQKWD---EIVTNSLPDIEEQLFEAEELND-----------------KFRFRKAKHEINEIESLLDLIEEDIEQIL 125 (569)
T ss_pred HHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHh-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655444 4456666666664333222211 22344455555666666666666666666
Q ss_pred HHHHHHHHHH
Q 005010 382 VEKDNLAWRE 391 (719)
Q Consensus 382 ~er~~~~~~~ 391 (719)
.+.+.+..+.
T Consensus 126 ~~l~~l~~~e 135 (569)
T PRK04778 126 EELQELLESE 135 (569)
T ss_pred HHHHHHHHHH
Confidence 6665555553
No 71
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.61 E-value=2.9 Score=42.04 Aligned_cols=101 Identities=15% Similarity=0.257 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh---hhHHHHHhHhhhhHHHH
Q 005010 603 MRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDY---NIKLVLEGVRARQLQDA 679 (719)
Q Consensus 603 Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~---n~kl~~E~~ka~q~~~~ 679 (719)
|-.+....++....|...+....++..-+..|++.+-..+.++.+.|.-|=-||-+-+-- +-.+++|+-+--
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i----- 160 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQI----- 160 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----
Confidence 333333444444445555555588888899999999999999999998888887554321 112333433321
Q ss_pred HHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhh
Q 005010 680 LLMDKHMMESEIQQANASLNFFDMKAARIENQVC 713 (719)
Q Consensus 680 l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~ 713 (719)
+.|..-+.......+-....|++||++++
T Consensus 161 -----~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 161 -----EELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344444455555667788888998875
No 72
>PF13514 AAA_27: AAA domain
Probab=95.50 E-value=11 Score=48.10 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhhchHHHHhhhhhhhhhHHHHh
Q 005010 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETE----------------LNMKIDLVDVFRRSSAVTDSKIADL 418 (719)
Q Consensus 355 ~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E----------------~~~k~E~~e~~~~~~~~~~~~i~~l 418 (719)
.+..+..+.......+.+....+..+......+...-.. |... +......-..+...
T Consensus 551 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p~~p~~~~~Wl~~-------~~~~~~~~~~~~~~ 623 (1111)
T PF13514_consen 551 RLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAGLPLSPAEMRDWLAR-------REAALEAAEELRAA 623 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 344566666667777777777777777777666432211 2111 11112223566777
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhcCCCC
Q 005010 419 GIEIQKQIDEKNRIEMRLEEASREPGR 445 (719)
Q Consensus 419 E~~LarvR~ere~L~~e~e~~~~~~~k 445 (719)
+..+...+..+..+...+.......|.
T Consensus 624 ~~~~~~~~~~~~~~~~~L~~~l~~~~~ 650 (1111)
T PF13514_consen 624 RAELEALRARRAAARAALAAALAALGP 650 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 788888888888888888887777663
No 73
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.08 E-value=12 Score=45.91 Aligned_cols=278 Identities=17% Similarity=0.234 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 308 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (719)
Q Consensus 308 eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~ 387 (719)
.+.++-.-.+.||.+|+.-.++.... ++|-...+ +-.|......+....++++++-......-.+-+++
T Consensus 188 kI~ell~yieerLreLEeEKeeL~~Y----qkldk~rr-------~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~ 256 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEELEKY----QKLDKERR-------SLEYTIYDRELNEINGELERLEEDRSSAPEESEQY 256 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHhHh-------hhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhH
Confidence 44445555555666666554443321 12221111 44666666655555555555554443333333333
Q ss_pred HHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHH
Q 005010 388 AWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQ 467 (719)
Q Consensus 388 ~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk 467 (719)
..+..... .++ ......+..|+..|.-+|.+.+.+.++-......-- .|.=.+..|+
T Consensus 257 ~~~~~~~~--d~~--------~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt-------------~lel~~kdlq 313 (1200)
T KOG0964|consen 257 IDALDKVE--DES--------EDLKCEIKELENKLTNLREEKEQLKARETKISKKKT-------------KLELKIKDLQ 313 (1200)
T ss_pred HHHHHHHH--HHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hhhhhhHHHH
Confidence 33221110 011 112566677777777777776666665444322211 1122233333
Q ss_pred HHHHHHH-HHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh-cCCC
Q 005010 468 RQLSKYK-EAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRR-ESTD 545 (719)
Q Consensus 468 ~Ev~R~K-e~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~-~~~d 545 (719)
.++..-+ ....+.+. . +.+...+..+.+|.....++|....+.-..++..+..+.+....|=..-..|.. .+++
T Consensus 314 ~~i~~n~q~r~~~l~~-l---~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~ 389 (1200)
T KOG0964|consen 314 DQITGNEQQRNLALHV-L---QKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKE 389 (1200)
T ss_pred HHhhhhhhhhhhHHHH-H---HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHH
Confidence 3332222 12122222 1 222333334455666777788888888888888998888876665443333322 2456
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhH
Q 005010 546 SRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKN 625 (719)
Q Consensus 546 ~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~ 625 (719)
-||.. +|.++..|+..|..-.. .......+|.+++..+.+. -
T Consensus 390 eRDkw--------ir~ei~~l~~~i~~~ke----------------~e~~lq~e~~~~e~~l~~~--------------~ 431 (1200)
T KOG0964|consen 390 ERDKW--------IRSEIEKLKRGINDTKE----------------QENILQKEIEDLESELKEK--------------L 431 (1200)
T ss_pred HHHHH--------HHHHHHHHHHHHhhhhh----------------HHHHHHHHHHHHHHHHHHH--------------H
Confidence 66654 78888888887754221 1123344566666665554 4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 005010 626 EEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDD 661 (719)
Q Consensus 626 ~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd 661 (719)
++-..+...|+-++--.++...-|.++-+.+-|--+
T Consensus 432 e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 432 EEIKELESSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555556666666655555544433
No 74
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.02 E-value=9.5 Score=44.57 Aligned_cols=127 Identities=17% Similarity=0.266 Sum_probs=96.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH----hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh---
Q 005010 586 EAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDA----LKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE--- 658 (719)
Q Consensus 586 e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~----l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e--- 658 (719)
+-..+.++..++.-|..|+..+.........+... ...+..+....+.|++..-+-..++|+.+..|-.|+..
T Consensus 191 ~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 191 EQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33455667777788888877777777777666655 78888899999999999888888888888888777642
Q ss_pred -------------------hhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhhhh
Q 005010 659 -------------------RDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQVCLF 715 (719)
Q Consensus 659 -------------------~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~~~ 715 (719)
+|+-|.+|..| | .+...++..+.+....++..+..++.+....+..+++++..+
T Consensus 271 ~~~~~~~~~i~~~~~~L~~kd~~i~~L~~d-i--~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 271 SKKLAKIDDIDALGSVLNQKDSEIAQLSND-I--ERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred hhhhccCCchHHHHHHHhHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444433 2 356778899999999999999999999999999998887654
No 75
>PRK09039 hypothetical protein; Validated
Probab=94.95 E-value=2.3 Score=46.92 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccc
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLN 284 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~ 284 (719)
|..++..+...++.|+.+... +-+.+........+|...+..+..+|..++..-++|........+.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~-------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~------ 110 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE-------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGA------ 110 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------
Confidence 445566666666666555444 4455555577777777777777777777777666666543211100
Q ss_pred CCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005010 285 LGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (719)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~ 345 (719)
..+.......+..++.+.+...+.-..++..|+.+...|..++..|+..|.
T Consensus 111 ----------~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 111 ----------GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred ----------cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112255666777777777777777777777777777777666665554
No 76
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.81 E-value=5.2 Score=41.83 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCC
Q 005010 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGN 287 (719)
Q Consensus 208 E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~ 287 (719)
+..+|....+......+.+-.++..+.+.+...+.++..++++.-....++.+++.|++++.....+
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~------------- 84 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA------------- 84 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 3444444444444444444555555666666668888888888888888888888888777644211
Q ss_pred CCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005010 288 KHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (719)
Q Consensus 288 ~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~ 345 (719)
..+.+.+..|.-++..++.-...-..+|..++.+...+..++..++-.+.
T Consensus 85 --------v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 85 --------VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred --------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11245588888888888877777777777777777777777766666544
No 77
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.77 E-value=7.1 Score=41.89 Aligned_cols=192 Identities=17% Similarity=0.297 Sum_probs=96.0
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHH
Q 005010 417 DLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHI----LRADVLSLTN 492 (719)
Q Consensus 417 ~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~----Lr~e~~~l~~ 492 (719)
.+...+..++..||.|.. -+.||+..+.++..+-..+-.+|..||+-..+++. |+.++.++..
T Consensus 31 El~~~~~~~~ekRdeln~-------------kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e 97 (294)
T COG1340 31 ELRKEASELAEKRDELNA-------------KVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKE 97 (294)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544 45677777777777777777888888766555444 2222222211
Q ss_pred HHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 005010 493 VLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDE 572 (719)
Q Consensus 493 ~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e 572 (719)
.. +.+......+..+...+..+.-.+. ..+-.+ +-|.++-..+..|+..|..
T Consensus 98 ~~-----------~~~~~~~~~~~~ler~i~~Le~~~~----------T~~L~~-------e~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 98 KR-----------NEFNLGGRSIKSLEREIERLEKKQQ----------TSVLTP-------EEERELVQKIKELRKELED 149 (294)
T ss_pred Hh-----------hhhhccCCCHHHHHHHHHHHHHHHH----------hcCCCh-------HHHHHHHHHHHHHHHHHHH
Confidence 11 1111112233444444443322111 112222 1344555566666665542
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005010 573 QSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQL 652 (719)
Q Consensus 573 ~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~l 652 (719)
. +.+.+ .-.++...-++|..++.+.......+..|......-+.++-.++.+.|-+-.--+.|.++--.+
T Consensus 150 ~------~k~~e----~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~ 219 (294)
T COG1340 150 A------KKALE----ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVEL 219 (294)
T ss_pred H------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111 1234455556666677766666666666666665556666666666666555555555544444
Q ss_pred HHHhhhh
Q 005010 653 LQQITER 659 (719)
Q Consensus 653 l~ql~e~ 659 (719)
.-.+.+.
T Consensus 220 ~~~~~e~ 226 (294)
T COG1340 220 SKKIDEL 226 (294)
T ss_pred HHHhHHH
Confidence 4433333
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.69 E-value=1.6 Score=45.52 Aligned_cols=88 Identities=11% Similarity=0.232 Sum_probs=62.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----hhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 005010 300 RDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQA 375 (719)
Q Consensus 300 ~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~----~~I~~S~~yk~L~~q~~~lk~eld~~r~ 375 (719)
+.+..+.++++.+..-......+++.+..+...+..++..+.-++.+. +.|.....|..|...+..++.....+..
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~ 110 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLED 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777888888888888888888888888888888888777754 6677778888888877776655555555
Q ss_pred HHHHHHHHHHHH
Q 005010 376 LFEKLQVEKDNL 387 (719)
Q Consensus 376 ~~ekLq~er~~~ 387 (719)
.+..|..+...+
T Consensus 111 el~~l~~~~~~l 122 (239)
T COG1579 111 ELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHH
Confidence 544444444333
No 79
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.59 E-value=16 Score=45.30 Aligned_cols=146 Identities=17% Similarity=0.249 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq 381 (719)
+-+.++.+.++++-.+.+..|++.+++....+..+...++.+.++. .+.+..++..++.++..+..++
T Consensus 318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~------------~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREI------------ENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888899999999999999999999998876644 3334444444444444444444
Q ss_pred HHHHHHHH-HHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcH
Q 005010 382 VEKDNLAW-RETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFP 460 (719)
Q Consensus 382 ~er~~~~~-~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~ 460 (719)
..-+.-.. ++.+.. .+. -.+..++..++..+.++|.+++++.-+...--.+-+ .++..+-.+.
T Consensus 386 ~~~~~~~~~~~~e~e--~k~--------~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~------~i~~~i~~l~ 449 (1074)
T KOG0250|consen 386 KQTNNELGSELEERE--NKL--------EQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE------HIEGEILQLR 449 (1074)
T ss_pred HHHHhhhhhhHHHHH--HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHH
Confidence 44422222 111211 111 113578888888888888888888777655333322 2333444555
Q ss_pred HHHHHHHHHHHHHHH
Q 005010 461 EDMSAMQRQLSKYKE 475 (719)
Q Consensus 461 ~~i~~Lk~Ev~R~Ke 475 (719)
+.|.....+++.++.
T Consensus 450 k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 450 KKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666666654
No 80
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.49 E-value=2.8 Score=39.80 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 005010 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657 (719)
Q Consensus 595 ~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~ 657 (719)
.+..+|..|+...+..+. .|...-.+...+...|-.||+-+-.-++|+..||.-|..||-
T Consensus 70 ~~~~~~~~l~~~~~~a~~---~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKA---ELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444432 223334456778889999999999999999999999999983
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.45 E-value=15 Score=44.14 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=41.5
Q ss_pred HHHHHHHHHHh--hhhhhhhhhhhHHHHhhhccCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHh
Q 005010 163 TKNIVSNILAA--VDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKD 240 (719)
Q Consensus 163 tk~~l~~lv~~--~~~~~~~~~~l~~~l~~~~~~d~~~~~~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~ 240 (719)
.+.++..|+.. ++.+..-.+.+.....+.. ....+..+...|...+..+..+...+..++..++..+...
T Consensus 171 l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~--------~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a 242 (650)
T TIGR03185 171 LKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSE--------LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEA 242 (650)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777633 4444433333332222110 2233555666666666666666666666666665555555
Q ss_pred HHHHHHHHH
Q 005010 241 KAKLNRLKG 249 (719)
Q Consensus 241 ~~e~~~L~~ 249 (719)
+.++.++..
T Consensus 243 ~~~l~~l~~ 251 (650)
T TIGR03185 243 QRSLESLEK 251 (650)
T ss_pred HHHHHHHHH
Confidence 555555544
No 82
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.08 E-value=16 Score=43.11 Aligned_cols=272 Identities=13% Similarity=0.175 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhH
Q 005010 355 AFLSVKNQLEKSKS-----EVFKYQALFEKLQVEKDNLAWRE-TELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDE 428 (719)
Q Consensus 355 ~yk~L~~q~~~lk~-----eld~~r~~~ekLq~er~~~~~~~-~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~e 428 (719)
.+..+..++..... +++.+...++.+....+.+-..+ +|.. ++.. ....+..+...|..++..
T Consensus 253 ~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~--------Ak~~---V~~~~~~l~~~l~~~~~~ 321 (560)
T PF06160_consen 253 EIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVE--------AKKY---VEKNLKELYEYLEHAKEQ 321 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH---HHHhHHHHHHHHHHHHHH
Confidence 44455555555332 56667777777777777776654 3332 3333 257778888899999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHhhhhhhHHh
Q 005010 429 KNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA----ALDIHILRADVLSLTNVLERKVKECETL 504 (719)
Q Consensus 429 re~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~----~~e~~~Lr~e~~~l~~~l~~k~~e~~~l 504 (719)
-..|..+++...+...= ...|+. .+..+.+++..+......+... ......+...+..+...+..-..+...+
T Consensus 322 ~~~l~~e~~~v~~sY~L--~~~e~~-~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~ 398 (560)
T PF06160_consen 322 NKELKEELERVSQSYTL--NHNELE-IVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEI 398 (560)
T ss_pred HHHHHHHHHHHHHhcCC--CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997777761 111111 1123344555555444333322 1222233333333333332211222222
Q ss_pred hhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHH
Q 005010 505 LASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIE 584 (719)
Q Consensus 505 ~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e 584 (719)
.+.+..-...=...+..+..++....+++..+.-.. .|-=|-+..+.. ..+..++..|...|..... .+...+.
T Consensus 399 ~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~n-LPGlp~~y~~~~---~~~~~~i~~l~~~L~~~pi--nm~~v~~ 472 (560)
T PF06160_consen 399 NESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSN-LPGLPEDYLDYF---FDVSDEIEELSDELNQVPI--NMDEVNK 472 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCHHHHHHH---HHHHHHHHHHHHHHhcCCc--CHHHHHH
Confidence 222222222222333333344444444444443332 233333333322 2467778888888765433 3333332
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh------HHhhhhHHHHHHHHHH-------HHHHHHhHHHHH
Q 005010 585 AEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLS------DALKSKNEEIEAYLSE-------IETIGQSYDDMQ 646 (719)
Q Consensus 585 ~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~------~~l~~~~~e~~al~~E-------ie~~gqA~edmq 646 (719)
.-..|..-+..+.....++-....-.++-++=.. ..+...-.+.+-++.. ++++++|.|.+.
T Consensus 473 ~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~ve 547 (560)
T PF06160_consen 473 QLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEAEDLFRNEYDYEKALETIATALEKVE 547 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhC
Confidence 2223344444444444444444443433332111 1333333444444444 888888888764
No 83
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.06 E-value=18 Score=43.52 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=22.9
Q ss_pred hHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC
Q 005010 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (719)
Q Consensus 413 ~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~ 444 (719)
.+..+++..+..++.++...+..+........
T Consensus 262 ~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~ 293 (650)
T TIGR03185 262 EEREQLERQLKEIEAARKANRAQLRELAADPL 293 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34567788888888888888877777555554
No 84
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.93 E-value=17 Score=42.94 Aligned_cols=165 Identities=17% Similarity=0.196 Sum_probs=89.1
Q ss_pred hHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC--h---hHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGR--K---EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADV 487 (719)
Q Consensus 413 ~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k--~---~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~ 487 (719)
.+|..|+.+=.++|.+-+.++-++.+...+..- . ...+.+---+.-..+.|..+++.+.-+|-....-.+.-.++
T Consensus 534 kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeL 613 (786)
T PF05483_consen 534 KQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEEL 613 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 567777878788888888777777775444331 1 11111222233444556666665544443222222211112
Q ss_pred hhHHHHHHhh-hhhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 005010 488 LSLTNVLERK-VKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSL 566 (719)
Q Consensus 488 ~~l~~~l~~k-~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~L 566 (719)
+--..+|..+ +-+. .++..-..-|..|..++..++....|+. +-|. .|+-.--.+|..+..+|+.+
T Consensus 614 qqeNk~LKKk~~aE~----kq~~~~eikVn~L~~E~e~~kk~~eE~~---~~~~------keie~K~~~e~~L~~EveK~ 680 (786)
T PF05483_consen 614 QQENKALKKKITAES----KQSNVYEIKVNKLQEELENLKKKHEEET---DKYQ------KEIESKSISEEELLGEVEKA 680 (786)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHH------HHHHHhhhhHHHHHHHHHHH
Confidence 1111222111 1111 1123335567777777777777655553 4443 23434445777888888888
Q ss_pred HhhhhhhcHHHHHHHHHHHHHHHHHHHHh
Q 005010 567 KSSLDEQSLELRVKTAIEAEAISQQRLAA 595 (719)
Q Consensus 567 k~~L~e~~~~~rvk~~~e~e~~~~~kl~~ 595 (719)
+.--++ -||.-.|.+-.||.||+.
T Consensus 681 k~~a~E-----AvK~q~EtdlrCQhKIAe 704 (786)
T PF05483_consen 681 KLTADE-----AVKLQEETDLRCQHKIAE 704 (786)
T ss_pred HHHHHH-----HHHhHHHHHHHHHHHHHH
Confidence 876554 366667777899999973
No 85
>PF15294 Leu_zip: Leucine zipper
Probab=93.90 E-value=10 Score=40.46 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----c-hhhhcChhHHHHHHHHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS----V-KCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~----~-~~I~~S~~yk~L~~q~~~lk~eld~~r~~ 376 (719)
+..++.+++.+ +...-..+..|...+.....++-..+..|.- + .-...|.+|..++.-+..=+.++..+|..
T Consensus 199 ~a~lK~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkr 275 (278)
T PF15294_consen 199 MAALKSELEKA---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKR 275 (278)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHH
Confidence 34444444433 5556667778888888888888888777663 2 45667999999998877766666666655
Q ss_pred H
Q 005010 377 F 377 (719)
Q Consensus 377 ~ 377 (719)
+
T Consensus 276 l 276 (278)
T PF15294_consen 276 L 276 (278)
T ss_pred h
Confidence 3
No 86
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=8.3 Score=40.88 Aligned_cols=70 Identities=23% Similarity=0.264 Sum_probs=58.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 005010 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL-AALRA 270 (719)
Q Consensus 201 ~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL-~~lk~ 270 (719)
....+..+..+++.+++.|..+...+..+++..+.......++++.|+++|+.+...+..-...| .|+|+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999999999999999999999999999999999999998887766666 45653
No 87
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.82 E-value=18 Score=42.87 Aligned_cols=131 Identities=21% Similarity=0.211 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 315 QASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETEL 394 (719)
Q Consensus 315 la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~ 394 (719)
.-..+..||+.|+.+...+..++..+...+ +.+...+..+..++.+.....+.++.+..-..+- .++
T Consensus 322 ~~~~~~~el~~l~~~l~~l~~~i~~~~~~~------------~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~-~~l 388 (594)
T PF05667_consen 322 EQEEQEQELEELQEQLDELESQIEELEAEI------------KMLKSSLKQLEEELEEKEAENEELEEELKLKKKT-VEL 388 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 335667788888888887777777776654 3556666667777777777766666665433222 233
Q ss_pred hhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 005010 395 NMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYK 474 (719)
Q Consensus 395 ~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~K 474 (719)
. .+.+.-|.+|+..+..-..-.-.|..+++... .|.+.|++.|-.+..++....+..+...|
T Consensus 389 L-------------~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R-----~pL~~e~r~lk~~~~~~~~e~~~~~~~ik 450 (594)
T PF05667_consen 389 L-------------PDAEENIAKLQALVEASEQRLVELAQQWEKHR-----APLIEEYRRLKEKASNRESESKQKLQEIK 450 (594)
T ss_pred h-------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 1 11234445555555555555555555555322 47777777776666655555554444444
Q ss_pred HH
Q 005010 475 EA 476 (719)
Q Consensus 475 e~ 476 (719)
..
T Consensus 451 ~~ 452 (594)
T PF05667_consen 451 EL 452 (594)
T ss_pred HH
Confidence 43
No 88
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.73 E-value=17 Score=42.30 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=13.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 005010 589 SQQRLAAAEAEIADMRQKLEAF 610 (719)
Q Consensus 589 ~~~kl~~~e~ei~~Lr~~l~~~ 610 (719)
.+-|+...+.||..|+..+.+.
T Consensus 360 ~~~k~~~ke~E~q~lr~~l~~~ 381 (511)
T PF09787_consen 360 LQLKLKEKESEIQKLRNQLSAR 381 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777766654
No 89
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.51 E-value=25 Score=43.39 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc----hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 324 KGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWR 390 (719)
Q Consensus 324 e~l~~e~~~L~~e~~~Lk~~l~~~----~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~ 390 (719)
++|.++|+-|+.+-+.|+..|... +-|.=....-.++.++.++..+.+--|..+++|+.|...+.-+
T Consensus 267 eelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 267 EELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666555532 1122223444678888889999999999999998888877554
No 90
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.42 E-value=15 Score=42.41 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 242 AKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 242 ~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
.-..-|..++..+..++..++.++...+.+
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567888888888888888888777644
No 91
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.32 E-value=22 Score=42.33 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHh
Q 005010 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVR 672 (719)
Q Consensus 625 ~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~k 672 (719)
+--.--|-+|-|+||.-+-=-|.|=.=+-..-.+++++...|.-+|-.
T Consensus 441 e~~~~ql~~et~ti~eyi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~ 488 (617)
T PF15070_consen 441 EHRFIQLSGETDTIGEYITLYQSQRAVLKQRHQEKEEYISRLAQDREE 488 (617)
T ss_pred HHHHHHhccCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 334444566777787776555555544557777778888777766644
No 92
>PRK09039 hypothetical protein; Validated
Probab=93.27 E-value=5.7 Score=43.89 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=61.3
Q ss_pred hhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005010 411 TDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490 (719)
Q Consensus 411 ~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l 490 (719)
++.++.++..++.-....|+.|..-+.... ....++..-+..+. ..|..+...|.++...+..|+.++..|
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~------~~~~~~~~~~~~l~---~~L~~~k~~~se~~~~V~~L~~qI~aL 149 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQALLAELA------GAGAAAEGRAGELA---QELDSEKQVSARALAQVELLNQQIAAL 149 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhcchHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345555555555555555555555444211 11112222222222 333344455556666677777777777
Q ss_pred HHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhhhh-HHHHHHH
Q 005010 491 TNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDS-NLELKLI 535 (719)
Q Consensus 491 ~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~-~~elkl~ 535 (719)
+..+..-..++.....+..+....|.+|...+..+... +++|.-+
T Consensus 150 r~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~ 195 (343)
T PRK09039 150 RRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY 195 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76665544444444445566667777777777777643 5555443
No 93
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.22 E-value=22 Score=43.38 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005010 240 DKAKLNRLKGELESAVKELEECNCKLAALRAER 272 (719)
Q Consensus 240 ~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~ 272 (719)
...-..-|.+++.++..++..++.++...+.+.
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~ 224 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355567789999999999999999998888653
No 94
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.62 E-value=25 Score=40.94 Aligned_cols=332 Identities=15% Similarity=0.116 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccccccccCCCCCCCch
Q 005010 49 KLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHD 128 (719)
Q Consensus 49 kL~rqLe~~kre~~~Le~rie~Le~rq~~~d~~L~~Vnr~W~QL~ddi~lL~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (719)
-++-.++--+....+|++.|...+ ..+..+-.+-.-|.-|-+|+.-.-
T Consensus 232 ~i~~~ie~l~~~n~~l~e~i~e~e----k~~~~~eslre~~~~L~~D~nK~~---------------------------- 279 (581)
T KOG0995|consen 232 SIANEIEDLKKTNRELEEMINERE----KDPGKEESLREKKARLQDDVNKFQ---------------------------- 279 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHHhHHHHHH----------------------------
Confidence 456666777777777777777333 456666777778888888874321
Q ss_pred HHHHHHhhcccCCCCCCCCCcchHHHHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhh--ccCCCchhhhhhhhH
Q 005010 129 AFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD--LQDGGSKQKASSNLQ 206 (719)
Q Consensus 129 ~fL~~Ll~~~~t~ss~~~~~~~~~e~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~--~~~d~~~~~~~~~L~ 206 (719)
++++.+. +. ...++..|..-.. =+.....-+..++..+++|...+... +..|. ..+.
T Consensus 280 ~y~~~~~--------~k---~~~~~~~l~~l~~----Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv------e~mn 338 (581)
T KOG0995|consen 280 AYVSQMK--------SK---KQHMEKKLEMLKS----EIEEKEEEIEKLQKENDELKKQIELQGISGEDV------ERMN 338 (581)
T ss_pred HHHHHHH--------hh---hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH------HHHH
Confidence 1222220 00 2233333322222 22222233445555566666655443 21221 2233
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CccccccC
Q 005010 207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKG-AFFPVLNL 285 (719)
Q Consensus 207 ~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g-~~~~~~~~ 285 (719)
.|...|...+..+..+-..++.++-.+ ..+++.--.++++.-.+|..+.++|-.--++.. .| .-.|...+
T Consensus 339 ~Er~~l~r~l~~i~~~~d~l~k~vw~~-------~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~--~n~~~~pe~~~ 409 (581)
T KOG0995|consen 339 LERNKLKRELNKIQSELDRLSKEVWEL-------KLEIEDFFKELEKKFIDLNSLIRRIKLGIAENS--KNLERNPERAA 409 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCcCCccCc
Confidence 334444444444433333333333333 556666667777777777777776633312211 11 00111100
Q ss_pred CCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHH
Q 005010 286 GNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEK 365 (719)
Q Consensus 286 ~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~ 365 (719)
+.|. + ..... ---+...+.+.......+..++..|+....++..-++.++..++ -+..++..
T Consensus 410 ~~~~-d-~k~~V----~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~------------~~~~el~~ 471 (581)
T KOG0995|consen 410 TNGV-D-LKSYV----KPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILG------------EIELELKK 471 (581)
T ss_pred cccc-c-chhHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 1111 0 00000 11233334444444444444555444444444443333333322 44555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC
Q 005010 366 SKSEVFKYQALFEKLQVEKDNLAWRE-TELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (719)
Q Consensus 366 lk~eld~~r~~~ekLq~er~~~~~~~-~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~ 444 (719)
+.+.....+...+.+....+....++ +++. . .. .++...+.+.+.-+..++.+++.+....++-.
T Consensus 472 ~~~~~~~~k~e~eee~~k~~~E~e~le~~l~--~-l~-------l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer---- 537 (581)
T KOG0995|consen 472 AESKYELKKEEAEEEWKKCRKEIEKLEEELL--N-LK-------LVLNTSMKEAEELVKSIELELDRMVATGEEER---- 537 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 55555566666555555555544443 1111 1 11 12244455555555555555555544444322
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 005010 445 RKEIIAEFRALVSSFPEDMSAMQRQLSKYKE 475 (719)
Q Consensus 445 k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke 475 (719)
..+..++-+++....+.+..+++.+...|.
T Consensus 538 -~ki~~ql~~~i~~i~~~k~~iqs~le~~k~ 567 (581)
T KOG0995|consen 538 -QKIAKQLFAVIDQISDFKVSIQSSLENLKA 567 (581)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888877764
No 95
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.55 E-value=35 Score=42.50 Aligned_cols=196 Identities=15% Similarity=0.261 Sum_probs=107.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 005010 419 GIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKV 498 (719)
Q Consensus 419 E~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~ 498 (719)
+..+.+++.-++.|..++.+..- -++ ..++...=++.|..++..++.++.-.|.. +.....+++...+.+....
T Consensus 651 ek~~~~L~~~k~rl~eel~ei~~--~~~-e~~~v~~~i~~le~~~~~~~~~~~~~k~~---l~~~~~El~~~~~~i~~~~ 724 (1141)
T KOG0018|consen 651 EKEVDQLKEKKERLLEELKEIQK--RRK-EVSSVESKIHGLEMRLKYSKLDLEQLKRS---LEQNELELQRTESEIDEFG 724 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhC
Confidence 67788899999999999988544 112 77788888889999999999888776632 2223333333333332111
Q ss_pred hhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHh-hhhhhcHHH
Q 005010 499 KECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKS-SLDEQSLEL 577 (719)
Q Consensus 499 ~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~-~L~e~~~~~ 577 (719)
.++-.+.-.+......+++|+....++.. +.|-+-+...+-- +-++-..+. ++....+. .++..-
T Consensus 725 p~i~~i~r~l~~~e~~~~~L~~~~n~ved-----~if~~f~~~igv~---ir~Yee~~~---~~~~a~k~~ef~~q~--- 790 (1141)
T KOG0018|consen 725 PEISEIKRKLQNREGEMKELEERMNKVED-----RIFKGFCRRIGVR---IREYEEREL---QQEFAKKRLEFENQK--- 790 (1141)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhcCee---eehHHHHHH---HHHHHHHHHHHHHHH---
Confidence 11222222344556777788888777777 4676666543322 323222211 11111110 011000
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005010 578 RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQN 649 (719)
Q Consensus 578 rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn 649 (719)
-+..+ +| ..+.+ .+.+.+++..++.+..+...++..+..++++..+|..+ +.|+..|
T Consensus 791 -~~l~~--------~l-~fe~~-~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~----~~~e~k~ 847 (1141)
T KOG0018|consen 791 -AKLEN--------QL-DFEKQ-KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI----EELEKKN 847 (1141)
T ss_pred -HHHhh--------hh-hheec-ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH----HHHHHHH
Confidence 00000 00 01111 34445555555555555666666688899999998888 6676655
No 96
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.46 E-value=19 Score=39.25 Aligned_cols=105 Identities=15% Similarity=0.269 Sum_probs=82.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhH
Q 005010 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGV 671 (719)
Q Consensus 592 kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ 671 (719)
++..+-.+=..|+.+|...-....+....|.-...--..|-.|||..+...-.+...|.-+-..--.-+-+.+.++.|+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55566666678888888888888888888888888899999999999999999999998888777777777777887777
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHh
Q 005010 672 RARQLQDALLMDKHMMESEIQQANA 696 (719)
Q Consensus 672 ka~q~~~~l~~ek~~l~~~~~~~~~ 696 (719)
.-...+..+...++.|+.=+.+++.
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7666666666666666655555543
No 97
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.26 E-value=14 Score=37.43 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=48.8
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHH
Q 005010 508 SADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEA 587 (719)
Q Consensus 508 ~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~ 587 (719)
+....++|..|+..+.++++...++.--+--... ++ .++..++..|++-...-+++.|-+. ..--.
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~------el-------~k~~~~l~~L~~L~~dknL~eReeL-~~kL~ 128 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKDE------EL-------LKTKDELKHLKKLSEDKNLAEREEL-QRKLS 128 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-------HHHHHHHHHHHHHHHcCCchhHHHH-HHHHH
Confidence 4566788888888888888876666544321100 00 1355566666665444344332221 11112
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 005010 588 ISQQRLAAAEAEIADMRQKLEAF 610 (719)
Q Consensus 588 ~~~~kl~~~e~ei~~Lr~~l~~~ 610 (719)
....+|...+..|..|..+++..
T Consensus 129 ~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 129 QLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777766654
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.11 E-value=15 Score=37.48 Aligned_cols=129 Identities=17% Similarity=0.190 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cccc-----hhhhcChhHHHHHHHHHHHHHHH
Q 005010 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT-------LKSV-----KCLSSSKAFLSVKNQLEKSKSEV 370 (719)
Q Consensus 303 e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~-------l~~~-----~~I~~S~~yk~L~~q~~~lk~el 370 (719)
..|+.++.+.+.....-...+.++..+|..|..-+..+.-+ +.+- .....-.-+..+..++..++-+.
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~ 109 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEH 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554444443333 3221 00000123334455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHh
Q 005010 371 FKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEAS 440 (719)
Q Consensus 371 d~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~ 440 (719)
+-+...+.+++.+|+.+..+- +. -..+++++. .-+.--||..|.-+...-+.-.+.+.+..
T Consensus 110 evL~qr~~kle~ErdeL~~kf-~~----~i~evqQk~----~~kn~lLEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 110 EVLEQRFEKLEQERDELYRKF-ES----AIQEVQQKT----GLKNLLLEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666555542 11 012222222 34455555555555555555555555533
No 99
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.10 E-value=31 Score=40.98 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 005010 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLER 496 (719)
Q Consensus 447 ~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~ 496 (719)
...++++..+.-|+.++.-|++.+.++..-.+....|.-+..++.+.+.+
T Consensus 268 ~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~r 317 (716)
T KOG4593|consen 268 ATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQR 317 (716)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34567777888888888888888877776666666666666666666643
No 100
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.99 E-value=16 Score=37.31 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=27.7
Q ss_pred hhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC
Q 005010 411 TDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR 445 (719)
Q Consensus 411 ~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k 445 (719)
++-+-..|+..+.+|-.+||+|...|+.+-.+..+
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788888999999999999999986666553
No 101
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.99 E-value=21 Score=38.70 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=56.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 201 ~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
.+..-..|+..|.+.+-+|+.+++.+..+...++..+.....--..|..+|-+++..|..+..=|..++
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678899999999999999999999999888888877777777788888888887777766554444
No 102
>PRK01156 chromosome segregation protein; Provisional
Probab=91.95 E-value=41 Score=41.94 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHhhHHH
Q 005010 677 QDALLMDKHMMESEIQQANASLNFFDM 703 (719)
Q Consensus 677 ~~~l~~ek~~l~~~~~~~~~~~e~~~~ 703 (719)
+..+......+..++..+..+++....
T Consensus 690 l~~l~~~~~~l~~~i~~l~~~~~~l~e 716 (895)
T PRK01156 690 LDDAKANRARLESTIEILRTRINELSD 716 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 333344444444444444444333333
No 103
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=37 Score=41.12 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhh
Q 005010 645 MQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQ 711 (719)
Q Consensus 645 mq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~ 711 (719)
||--|..|...|.+-.--|+.+- -.+.+|-+.-+.-...-....++.+...++.+++.+..+|+.
T Consensus 883 ~qadse~l~ka~~~~k~~nl~lk--i~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e 947 (970)
T KOG0946|consen 883 AQADSETLSKALKTVKSENLSLK--IVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDE 947 (970)
T ss_pred HhhcchHHHHHHHHhhcccchhc--ccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhh
Confidence 67777777777766655555544 444445555556666667788888999999998888877765
No 104
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.59 E-value=24 Score=38.55 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQL 320 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl 320 (719)
+.+..+.+.-.+.++.++....++...+..+ +..++ ..+.+|++ ....|-.-+.+.++....-.
T Consensus 22 q~ErDqyKlMAEqLqer~q~LKkk~~el~~~--~~~~~--------d~~~~~~~------~~~~La~lL~~sre~Nk~L~ 85 (319)
T PF09789_consen 22 QSERDQYKLMAEQLQERYQALKKKYRELIQE--AAGFG--------DPSIPPEK------ENKNLAQLLSESREQNKKLK 85 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcccC--------CccCCccc------chhhHHHHHHHHHHHHHHHH
Confidence 5666666666666666666665555444422 11111 11111111 13445555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKS 346 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~ 346 (719)
.|+..|++.+..+...+--|++.+.+
T Consensus 86 ~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 86 EEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 67777777777777666666666553
No 105
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.22 E-value=30 Score=39.06 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=45.8
Q ss_pred hHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 005010 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (719)
Q Consensus 413 ~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~ 476 (719)
++.-.-...|++.+.++..+..+++....... ....|++.-.++|.+.|..+..+..+-+++
T Consensus 192 ~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q--~~l~eL~~~~~~L~~~Ias~e~~aA~~re~ 253 (420)
T COG4942 192 SEQRAQQAKLAQLLEERKKTLAQLNSELSADQ--KKLEELRANESRLKNEIASAEAAAAKAREA 253 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566788888899888888888555544 556788888888888888888777655544
No 106
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.01 E-value=44 Score=40.50 Aligned_cols=46 Identities=4% Similarity=0.138 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV 347 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~ 347 (719)
++.+..-.-.++.+--..--+++.+++....+..+++.|+.++.+.
T Consensus 652 ~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 652 HEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445455555666666666677777777777777777777776654
No 107
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.95 E-value=29 Score=38.40 Aligned_cols=259 Identities=14% Similarity=0.102 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hccchhhHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccc
Q 005010 43 LQFQNQKLVQKLETQKVEYSALENKFAQLKE--------RQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRC 114 (719)
Q Consensus 43 LqfQn~kL~rqLe~~kre~~~Le~rie~Le~--------rq~~~d~~L~~Vnr~W~QL~ddi~lL~~r~~~~~~~~~~~~ 114 (719)
|.-.=++|.-||+..+-+-..+++-+..++. -|++|+..|..+...-.+.++|+.-.-+|
T Consensus 296 L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqR------------ 363 (593)
T KOG4807|consen 296 LEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQR------------ 363 (593)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------
Confidence 3334457888888888877777776666554 46788999999999999999988432221
Q ss_pred cccccCCCCCCCchHHHHHHhhcccCCCCCCCCCcchHHHHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhh-c-
Q 005010 115 LSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD-L- 192 (719)
Q Consensus 115 ~~~~~~~~~~~~~~~fL~~Ll~~~~t~ss~~~~~~~~~e~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~-~- 192 (719)
-|.+| -++-+--|.+-..+|.++|..+..+.. +++...|... +
T Consensus 364 ---------------ELekL--------------reEKdrLLAEETAATiSAIEAMKnAhr------EEmeRELeKsqSv 408 (593)
T KOG4807|consen 364 ---------------ELEKL--------------REEKDRLLAEETAATISAIEAMKNAHR------EEMERELEKSQSV 408 (593)
T ss_pred ---------------HHHHH--------------HHHHHhhhhhhhhhhhHHHHHHHHHHH------HHHHHHHHhhhcc
Confidence 12233 233333344444455555554444332 2233333322 1
Q ss_pred cCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005010 193 QDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAER 272 (719)
Q Consensus 193 ~~d~~~~~~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~ 272 (719)
+.|+.. .-.....++..++..+.-|......--.+..++-..+...+.-+.++..+--++-.--.....+|+.-...
T Consensus 409 nsdvea--LRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItr- 485 (593)
T KOG4807|consen 409 NSDVEA--LRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITR- 485 (593)
T ss_pred ccChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHH-
Confidence 111110 11123345555555555555555444444555444444444444444444333333333333333211100
Q ss_pred hcccCCccccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhc
Q 005010 273 DVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSS 352 (719)
Q Consensus 273 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~ 352 (719)
.-| ...|.++| +|.|..+++...+| .-|....-.||+=|.+++..|..+++...-+ -.| .
T Consensus 486 --LRt-lltgdGgG-----tGsplaqgkdayEL-------EVLLRVKEsEiQYLKqEissLkDELQtalrD---Kky--a 545 (593)
T KOG4807|consen 486 --LRT-LLTGDGGG-----TGSPLAQGKDAYEL-------EVLLRVKESEIQYLKQEISSLKDELQTALRD---KKY--A 545 (593)
T ss_pred --HHH-HhccCCCC-----CCCccccCcchhhH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh---hhc--c
Confidence 000 01111111 22344444433333 3445555667777777777777766554433 333 3
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 005010 353 SKAFLSVKNQLEKSKSEVF 371 (719)
Q Consensus 353 S~~yk~L~~q~~~lk~eld 371 (719)
|.-|+.++.+++..++..|
T Consensus 546 SdKYkDiYtELSiaKakad 564 (593)
T KOG4807|consen 546 SDKYKDIYTELSIAKAKAD 564 (593)
T ss_pred ccchhHHHHHHHHHHHhhh
Confidence 6899999999999877544
No 108
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.93 E-value=64 Score=42.28 Aligned_cols=126 Identities=18% Similarity=0.154 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQL 320 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl 320 (719)
+.+|.+|..+|+.+..++..+..++.+|..+.... |+. ..+...-..+.....-...+.
T Consensus 748 ~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~-----Ps~----------------~dL~~A~~~l~~A~~~~~~a~ 806 (1353)
T TIGR02680 748 DARLAAVDDELAELARELRALGARQRALADELAGA-----PSD----------------RSLRAAHRRAAEAERQAESAE 806 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCc----------------hHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666554332 211 002222334444455555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc----hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~~----~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~ 387 (719)
.++..+..........+...+..+.-. ..-.....|..+..-+..+...+..++..+..|..-...+
T Consensus 807 ~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~ 877 (1353)
T TIGR02680 807 RELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRA 877 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666554421 2233334555555555555555555544444444443333
No 109
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.58 E-value=5.5 Score=39.58 Aligned_cols=112 Identities=22% Similarity=0.322 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhh
Q 005010 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRAR 674 (719)
Q Consensus 595 ~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~ 674 (719)
....+|..+|.++...+.....+...|..+++=+++|. .| -|+.++-.|..|.-.|-||.....+|=.--.++.
T Consensus 3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~-~i-----DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v 76 (177)
T PF13870_consen 3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLH-LI-----DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTV 76 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999998888888888888887776643 33 4999999999999999999999999887777777
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhh
Q 005010 675 QLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQV 712 (719)
Q Consensus 675 q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~ 712 (719)
|...-.++-...+..+...+...+......+.++.+..
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l 114 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREEL 114 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777666654
No 110
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.37 E-value=73 Score=42.03 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005010 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (719)
Q Consensus 303 e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~ 345 (719)
++|...++...+-...-..++.++.++...+...++.+.....
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555666666666666666655555544
No 111
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.96 E-value=2.5 Score=42.69 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=52.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcc
Q 005010 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFF 280 (719)
Q Consensus 201 ~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~ 280 (719)
....+..-+..++.+++.++..+..+...+-.+.+.+...+.++......|..+..++...+.++..+..+-.
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~------- 140 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELK------- 140 (194)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4445666777888888888888888888888888888888888888888888888888888777766653310
Q ss_pred ccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005010 281 PVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQN 342 (719)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~ 342 (719)
...+.++.+.+++.-+....+.--..+.+|+.||..|.+..-..++
T Consensus 141 ----------------ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 141 ----------------EKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122267788888888888888888888888888888877655554
No 112
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=89.94 E-value=8 Score=35.94 Aligned_cols=105 Identities=21% Similarity=0.281 Sum_probs=82.9
Q ss_pred HhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHH
Q 005010 611 KRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESE 690 (719)
Q Consensus 611 ~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~ 690 (719)
+|.+..+...|..+..+ +-.-++.+.+-|+.+......|=..+..-|...-.--..+++|.+....-...+.....+
T Consensus 6 kre~~~~~~~l~~kr~e---~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~e 82 (126)
T PF13863_consen 6 KREMFLVQLALDTKREE---IERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAE 82 (126)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666 444566667777777777777777777777777777778888999999999999999999
Q ss_pred HHHHHhhHhhHHHHHHHHHhhhhhhccc
Q 005010 691 IQQANASLNFFDMKAARIENQVCLFGIF 718 (719)
Q Consensus 691 ~~~~~~~~e~~~~~~~~~e~~~~~~~~~ 718 (719)
+..+...++.....+.+++++..-|.+|
T Consensus 83 i~~l~~~l~~l~~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 83 IKKLKAELEELKSEISKLEEKLEEYKKY 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888776
No 113
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.68 E-value=2.3 Score=44.70 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRA 270 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~ 270 (719)
|..+.......-..|..+...+..++..+.........+..+|..++..++..+.++..+|..+-+
T Consensus 66 L~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~ 131 (246)
T PF00769_consen 66 LEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMS 131 (246)
T ss_dssp HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444556667777777777777777777888888888888888888888777755543
No 114
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.30 E-value=75 Score=40.58 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=57.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 005010 591 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEG 670 (719)
Q Consensus 591 ~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~ 670 (719)
.++...+.++..|+..+...++...+. .++. .+..-.+-..+.....+.-+.|..|=+.|-.--+....++.+.
T Consensus 215 ~~~~~l~~~~~~Lq~~in~kR~~~se~--~~~~----~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~ 288 (1109)
T PRK10929 215 KRSQQLDAYLQALRNQLNSQRQREAER--ALES----TELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQ 288 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH----HHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665543321111 1110 0000011112233344555678888888888888888888888
Q ss_pred HhhhhHHHHHHHhHHHHHHHHHHHH
Q 005010 671 VRARQLQDALLMDKHMMESEIQQAN 695 (719)
Q Consensus 671 ~ka~q~~~~l~~ek~~l~~~~~~~~ 695 (719)
..+++....+.---..+.+|++-+.
T Consensus 289 ~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 289 RQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888887777777777777766554
No 115
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.73 E-value=41 Score=36.83 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 005010 478 LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRR 541 (719)
Q Consensus 478 ~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~ 541 (719)
.++..++.++.+....+..+..+...+..++..-...|..++.++..+...+.+++-+++-.++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~ 272 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRG 272 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555555555555544444444555555555677788888888888888888877776654
No 116
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.61 E-value=73 Score=39.60 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHh
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALF-----EKLQVEKDNLAWRETELN 395 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~-----ekLq~er~~~~~~~~E~~ 395 (719)
.+|+..+.+...+.+++..|+.. +.-|..|++|+....-.++-+...+ -+++.+...+...+
T Consensus 684 ~~~~~~q~el~~le~eL~~le~~---------~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v---- 750 (1174)
T KOG0933|consen 684 KELRAIQKELEALERELKSLEAQ---------SQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEV---- 750 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH----
Confidence 35666666666666666666665 5677788888776444443333221 11222222222222
Q ss_pred hhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC
Q 005010 396 MKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (719)
Q Consensus 396 ~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~ 444 (719)
-+++.+|...+-.+-.|-....+|...+..+....+
T Consensus 751 -------------~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re 786 (1174)
T KOG0933|consen 751 -------------EESEQQIKEKERALKKCEDKISTLEKKMKDAKANRE 786 (1174)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH
Confidence 122456666666666666666666666666555555
No 117
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.48 E-value=7.5 Score=41.02 Aligned_cols=137 Identities=14% Similarity=0.175 Sum_probs=75.3
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPG-RKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~-k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l 490 (719)
+.++..|.-..+.++..++.|.-.-.-..++-+ +-..+.=+---+++....|..|.+++.|||........-.. ..+.
T Consensus 59 k~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~-~~~~ 137 (307)
T PF10481_consen 59 KNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS-SGDV 137 (307)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCc
Confidence 445566666777777777777666665666655 22344444555667777777788888777743221111000 0110
Q ss_pred H-H-------HH-Hhhh-------hhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHH
Q 005010 491 T-N-------VL-ERKV-------KECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARD 554 (719)
Q Consensus 491 ~-~-------~l-~~k~-------~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~ 554 (719)
. . .| .-.+ .-...|..+|...+.+-+.|.++++.++.. ..--..-...-.+|||+.+.+
T Consensus 138 sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~k-----~~~q~~~qstmsHRdIArhQa 212 (307)
T PF10481_consen 138 SLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQAK-----KASQAAPQSTMSHRDIARHQA 212 (307)
T ss_pred cccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhcc-----cCCCcCccccccHHHHHHHhc
Confidence 0 0 00 0000 013566777888889999999988877642 111111233446788866544
No 118
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=88.39 E-value=83 Score=39.94 Aligned_cols=19 Identities=0% Similarity=0.125 Sum_probs=12.0
Q ss_pred HHhhcHHHHHHHHHHHHHH
Q 005010 455 LVSSFPEDMSAMQRQLSKY 473 (719)
Q Consensus 455 Lissl~~~i~~Lk~Ev~R~ 473 (719)
=...++++..++.+|+.++
T Consensus 675 ~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 675 KLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777666
No 119
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.33 E-value=50 Score=37.38 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAALRAER 272 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~ 272 (719)
..-..-|..+++.+..++..++.++...+.+.
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566788899999999999999998888664
No 120
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.95 E-value=1e+02 Score=40.48 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=12.9
Q ss_pred hhhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 410 VTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 410 ~~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
.++.+|..++..++.+..+...|......
T Consensus 746 el~~~IaeL~~~i~~l~~~l~~l~~r~~~ 774 (1353)
T TIGR02680 746 ELDARLAAVDDELAELARELRALGARQRA 774 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 121
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=87.85 E-value=43 Score=36.05 Aligned_cols=111 Identities=17% Similarity=0.277 Sum_probs=67.0
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhh
Q 005010 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLT 526 (719)
Q Consensus 447 ~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~ 526 (719)
..-.-|..=+|.+.+.|..|-.++ -.+.+.+++|..+++..+..|..++ -.+..+...+..++
T Consensus 130 ~lqdkmn~d~S~lkd~ne~LsQqL---skaesK~nsLe~elh~trdaLrEKt--------------L~lE~~QrdL~Qtq 192 (305)
T PF14915_consen 130 RLQDKMNSDVSNLKDNNEILSQQL---SKAESKFNSLEIELHHTRDALREKT--------------LALESVQRDLSQTQ 192 (305)
T ss_pred HHHHHhcchHHhHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 444455556777888888887665 4466677888888877777765442 34445555555555
Q ss_pred hhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005010 527 DSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQK 606 (719)
Q Consensus 527 ~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~ 606 (719)
...+||+ .||.. +... +...+.+++ ..+.||..+..+.--||++
T Consensus 193 ~q~KE~e---~m~qn---e~~k-----------------v~k~~~Kqe-------------s~eERL~QlqsEN~LLrQQ 236 (305)
T PF14915_consen 193 CQIKEIE---HMYQN---EQDK-----------------VNKYIGKQE-------------SLEERLSQLQSENMLLRQQ 236 (305)
T ss_pred HHHHHHH---HHHHh---HHHH-----------------HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 5555554 56643 2211 111111111 3456888888888888888
Q ss_pred HHHH
Q 005010 607 LEAF 610 (719)
Q Consensus 607 l~~~ 610 (719)
|+.+
T Consensus 237 LddA 240 (305)
T PF14915_consen 237 LDDA 240 (305)
T ss_pred HHHH
Confidence 8886
No 122
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.18 E-value=39 Score=35.90 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
..|+.|+..|...++.|......++-+++.- +..+.-|.|+|......+++..-.+-+++++
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~K-------e~qv~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVK-------ESQVNFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666666655555555555554 7888888888888888888888877777753
No 123
>PF15294 Leu_zip: Leucine zipper
Probab=87.11 E-value=46 Score=35.62 Aligned_cols=145 Identities=12% Similarity=0.148 Sum_probs=71.5
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----hhhhcChhHHHHHHHHHHHHHHHH
Q 005010 296 RDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVF 371 (719)
Q Consensus 296 ~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~----~~I~~S~~yk~L~~q~~~lk~eld 371 (719)
+--.+++..|+.+.+.++.-...--.+--....+...+..++..|+....+. +.+........|.+++..++.++.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~e 207 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELE 207 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHH
Confidence 3344556667766666665333333333344445555555555555533332 123345566667777777665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHH
Q 005010 372 KYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAE 451 (719)
Q Consensus 372 ~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E 451 (719)
..-... ......+ +..+.....+|-++.....+...+++.--+. .+...-
T Consensus 208 k~~~d~-------~~~~k~L--------------------~e~L~~~KhelL~~QeqL~~aekeLekKfqq---T~ay~N 257 (278)
T PF15294_consen 208 KALQDK-------ESQQKAL--------------------EETLQSCKHELLRVQEQLSLAEKELEKKFQQ---TAAYRN 257 (278)
T ss_pred HHHHHH-------HHHHHHH--------------------HHHHHHHHHHHHhcchhhhcchhhHHHHhCc---cHHHHH
Confidence 443221 1111111 1112222222333333322222333322221 366788
Q ss_pred HHHHHhhcHHHHHHHHHHH
Q 005010 452 FRALVSSFPEDMSAMQRQL 470 (719)
Q Consensus 452 ~r~Lissl~~~i~~Lk~Ev 470 (719)
|+.++.+-..+|..|...+
T Consensus 258 Mk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 258 MKEILTKKNEQIKELRKRL 276 (278)
T ss_pred hHHHHHhccHHHHHHHHHh
Confidence 9999999999888887654
No 124
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=87.05 E-value=57 Score=36.58 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=30.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 005010 420 IEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (719)
Q Consensus 420 ~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~ 473 (719)
.+|-++|.+.=+|...+|| |=..|+++|=++|..|+.+.+=+
T Consensus 179 ~~leQLRre~V~lentlEQ------------EqEalvN~LwKrmdkLe~ekr~L 220 (552)
T KOG2129|consen 179 NTLEQLRREAVQLENTLEQ------------EQEALVNSLWKRMDKLEQEKRYL 220 (552)
T ss_pred hhHHHHHHHHHHHhhHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788777777666665 33469999999999999887444
No 125
>PLN03188 kinesin-12 family protein; Provisional
Probab=86.75 E-value=1.1e+02 Score=39.36 Aligned_cols=111 Identities=20% Similarity=0.230 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHH----HHhhHH----HHHHHhHHHHHHHHHH
Q 005010 366 SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKI----ADLGIE----IQKQIDEKNRIEMRLE 437 (719)
Q Consensus 366 lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i----~~lE~~----LarvR~ere~L~~e~e 437 (719)
|..+++-.|.++++|+.|.+.-.+--.|+ .++.++. +.=.+|+ ++|+.. |++-|.-++- ..++.
T Consensus 1070 lr~eles~r~l~Ekl~~EL~~eK~c~eel------~~a~q~a-m~ghar~~e~ya~l~ek~~~ll~~hr~i~eg-i~dvk 1141 (1320)
T PLN03188 1070 LRTELDASRALAEKQKHELDTEKRCAEEL------KEAMQMA-MEGHARMLEQYADLEEKHIQLLARHRRIQEG-IDDVK 1141 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 67788889999999999988766553333 2332222 1112333 223222 2222222221 12333
Q ss_pred HHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005010 438 EASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVL 494 (719)
Q Consensus 438 ~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l 494 (719)
-+.+..|. |.- -..|++|-.+|..|+.|-.|-+.. |+.+..+|...|
T Consensus 1142 kaaakag~kg~~----~~f~~alaae~s~l~~ereker~~------~~~enk~l~~ql 1189 (1320)
T PLN03188 1142 KAAARAGVRGAE----SKFINALAAEISALKVEREKERRY------LRDENKSLQAQL 1189 (1320)
T ss_pred HHHHHhccccch----HHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHH
Confidence 35555553 322 235667778888888776555544 455555554444
No 126
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=86.51 E-value=46 Score=34.99 Aligned_cols=176 Identities=17% Similarity=0.204 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 307 SVHKELMDQASHQ----LLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (719)
Q Consensus 307 ~eleE~k~la~~R----l~ELe~l~~e~~~L~~e~~~Lk~~l~~~-~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq 381 (719)
..+.+....|..| ...|-.-.+|.+.++.++..||....-- --++++..--.+.--|..|+.++++....++.+|
T Consensus 118 ~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Q 197 (330)
T KOG2991|consen 118 EKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQ 197 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445444 4566677788888888888888776532 2333333333567778889999999999999999
Q ss_pred HHHHHHHHH----H-HHHhhh-----hchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHH
Q 005010 382 VEKDNLAWR----E-TELNMK-----IDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAE 451 (719)
Q Consensus 382 ~er~~~~~~----~-~E~~~k-----~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E 451 (719)
.+..++.-- - +-+|+| -|..++-++. ++.+|.+|+..|+=..+..++|+.-+++.. +...|
T Consensus 198 nelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~---s~Gria~Le~eLAmQKs~seElkssq~eL~------dfm~e 268 (330)
T KOG2991|consen 198 NELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQA---SEGRIAELEIELAMQKSQSEELKSSQEELY------DFMEE 268 (330)
T ss_pred hhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhh---hcccHHHHHHHHHHHHhhHHHHHHhHHHHH------HHHHH
Confidence 998876320 0 111111 1344554444 478888888888877766666665554421 22222
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005010 452 FRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVL 494 (719)
Q Consensus 452 ~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l 494 (719)
+-.=|+-.+.-|--|+ .++|++..+|..|...+.-+..+.
T Consensus 269 LdedVEgmqsTiliLQ---q~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 269 LDEDVEGMQSTILILQ---QKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHHHHhcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222233333333 344666666666665554444444
No 127
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=86.43 E-value=41 Score=34.34 Aligned_cols=147 Identities=16% Similarity=0.192 Sum_probs=89.8
Q ss_pred HHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHH
Q 005010 560 WAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639 (719)
Q Consensus 560 ~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~g 639 (719)
-.|+.-||++|.+...+.-.|. + -|..+.+.+.+++.++......+..|...+..+..+.+..-+|+....
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~-~--------Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~ 79 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKD-S--------EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK 79 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-h--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh
Confidence 3567778888876655443332 2 245666677777777777777777777777777777777777776665
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhHH-----------HHHhHhhhh-----HHHHHHHhHHHHHHHHHHHHhhHhhHHH
Q 005010 640 QSYDDMQTQNQQLLQQITERDDYNIKL-----------VLEGVRARQ-----LQDALLMDKHMMESEIQQANASLNFFDM 703 (719)
Q Consensus 640 qA~edmq~Qn~~ll~ql~e~dd~n~kl-----------~~E~~ka~q-----~~~~l~~ek~~l~~~~~~~~~~~e~~~~ 703 (719)
.--+-+.++-..|=.++.+..+....+ .++.+++.. ....|.++.+.|..++.......+.|..
T Consensus 80 ~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~ 159 (202)
T PF06818_consen 80 NEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRS 159 (202)
T ss_pred CHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 555555555444444444444443333 344555432 3567888888888888877777666543
Q ss_pred HH-----HHHHhhhhhh
Q 005010 704 KA-----ARIENQVCLF 715 (719)
Q Consensus 704 ~~-----~~~e~~~~~~ 715 (719)
-. .=-||++|.+
T Consensus 160 ~Fe~ER~~W~eEKekVi 176 (202)
T PF06818_consen 160 SFEQERRTWQEEKEKVI 176 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 22 2245555544
No 128
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.33 E-value=41 Score=34.20 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005010 314 DQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (719)
Q Consensus 314 ~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~ 345 (719)
-+.+.|+..+.+|+.++..+..++..+..+.+
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk 36 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKENK 36 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777776644
No 129
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.96 E-value=7.4 Score=39.34 Aligned_cols=63 Identities=22% Similarity=0.182 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (719)
Q Consensus 203 ~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL 265 (719)
..|..++..|+..+..+....+....-+..++|.+.....+..-+.+.+..++.|-...-.|+
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555555555554444
No 130
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.89 E-value=34 Score=32.94 Aligned_cols=69 Identities=20% Similarity=0.380 Sum_probs=35.6
Q ss_pred hHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 005010 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKE-AALDIHILRADV 487 (719)
Q Consensus 413 ~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke-~~~e~~~Lr~e~ 487 (719)
+.+.+++.+|.-||++++.|--.+..- +.-+.++..+.+++.+.|.-.+.+....++ ....+..|.+++
T Consensus 66 ~el~~L~~EL~~l~sEk~~L~k~lq~~------q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql 135 (140)
T PF10473_consen 66 SELNQLELELDTLRSEKENLDKELQKK------QEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQL 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544443322 344566777777777777766666544443 333444444333
No 131
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=85.77 E-value=70 Score=36.36 Aligned_cols=222 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcc---cchhhhcChhHHHHHHHHHH-------------------------------------HHH
Q 005010 329 GRIKVLQQLYNLQNTLK---SVKCLSSSKAFLSVKNQLEK-------------------------------------SKS 368 (719)
Q Consensus 329 e~~~L~~e~~~Lk~~l~---~~~~I~~S~~yk~L~~q~~~-------------------------------------lk~ 368 (719)
|.-.|++|++.|+..|. |...-.....|..|.-=++. |+.
T Consensus 223 EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~ 302 (488)
T PF06548_consen 223 EKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISLTEELRV 302 (488)
T ss_pred hHHHHHHHHHHHHHHHHhccccccccccccccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhH
Q 005010 369 EVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEI 448 (719)
Q Consensus 369 eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~ 448 (719)
+++.+|.++++++.+.+.=..--.|+. ++...+..--+..=.+..+|+.....+-.--.-+.-=++..+.+..+-..
T Consensus 303 dle~~r~~aek~~~EL~~Ek~c~eEL~---~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~ 379 (488)
T PF06548_consen 303 DLESSRSLAEKLEMELDSEKKCTEELD---DALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGV 379 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhh----hHHhhhcchhHHHHHHHHHHHHHh
Q 005010 449 IAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKE----CETLLASSADQVAEIHKLQAMVQD 524 (719)
Q Consensus 449 ~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e----~~~l~~~~~~~~~~ik~Lk~~l~k 524 (719)
.--=-..|++|-.+|..|+.|-.|-+.- |+.+..+|...|.. |-| ...|--++.+...-..-.+.....
T Consensus 380 kG~~~rF~~slaaEiSalr~erEkEr~~------l~~eNk~L~~QLrD-TAEAVqAagEllvrl~eaeea~~~a~~r~~~ 452 (488)
T PF06548_consen 380 KGAESRFINSLAAEISALRAEREKERRF------LKDENKGLQIQLRD-TAEAVQAAGELLVRLREAEEAASVAQERAMD 452 (488)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHh-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHH
Q 005010 525 LTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLE 576 (719)
Q Consensus 525 a~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~ 576 (719)
+.+....++--+|-.+. +-..|+..+++.|.++.++
T Consensus 453 ~eqe~ek~~kqiekLK~----------------kh~~Ei~t~kq~laes~lp 488 (488)
T PF06548_consen 453 AEQENEKAKKQIEKLKR----------------KHKMEISTMKQYLAESRLP 488 (488)
T ss_pred HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhccCC
No 132
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=84.64 E-value=1.1e+02 Score=37.61 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005010 377 FEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALV 456 (719)
Q Consensus 377 ~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Li 456 (719)
-+|-.+|-.++..++ + . +.+....++.|+..|+..|-.|...---.+-+.++..++.- ..+..|+...-
T Consensus 19 wekae~e~~~lk~~l-~--------~-~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~-~~~s~e~e~~~ 87 (769)
T PF05911_consen 19 WEKAEAEAASLKQQL-E--------A-ATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAV-AKKSKEWEKIK 87 (769)
T ss_pred HHHHHHHHHHHHHHH-H--------H-HHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH-HHHhHHHHHHH
Confidence 345566666666665 1 1 22222346889988888887655544444444444333332 12223333333
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005010 457 SSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLIL 536 (719)
Q Consensus 457 ssl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~l 536 (719)
.-|+.++..+. ..+..+.++...+...+..+..-+..|...-+....+|..|...+.-......-|||=+
T Consensus 88 ~~le~~l~e~~----------~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~ 157 (769)
T PF05911_consen 88 SELEAKLAELS----------KRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYEL 157 (769)
T ss_pred HHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 33333444444444444444444555555556667788889999888888888888887
Q ss_pred HHHhh
Q 005010 537 DMYRR 541 (719)
Q Consensus 537 dmy~~ 541 (719)
-|...
T Consensus 158 ~~~~k 162 (769)
T PF05911_consen 158 HVLSK 162 (769)
T ss_pred HHHHH
Confidence 77743
No 133
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.63 E-value=32 Score=33.14 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEK 379 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~--~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ek 379 (719)
+-+|-..++.....-..-...+..+..++..+...++.|+.++... ++.........++.++..+...+...+.++.+
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555556666666666666666666666665543 22222233344455555544444444444444
Q ss_pred HHHHH
Q 005010 380 LQVEK 384 (719)
Q Consensus 380 Lq~er 384 (719)
++.-.
T Consensus 120 lk~~~ 124 (151)
T PF11559_consen 120 LKNQL 124 (151)
T ss_pred HHHHH
Confidence 44333
No 134
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=84.59 E-value=1.2e+02 Score=38.05 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 359 VKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (719)
Q Consensus 359 L~~q~~~lk~eld~~r~~~ekLq~er~~~ 387 (719)
+...+..+...+++.......++......
T Consensus 415 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 415 LEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555666555555555555553
No 135
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=84.26 E-value=61 Score=34.41 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHH-hHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005010 205 LQSEVKNLRLALMDLHLKHKS-LTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRA 270 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~-ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~ 270 (719)
|...-..+.+.++.|...++. +..--..|+..-.+...++..|..+++.+.+.+.++...|..|..
T Consensus 43 lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 43 LLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666555 334444555555666788888888888888888888888877763
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.22 E-value=87 Score=36.13 Aligned_cols=207 Identities=16% Similarity=0.204 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhh-hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccc
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSR-QDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVL 283 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l-~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~ 283 (719)
+..++..++..+.....+...+-.+.... -+..+....++..+..++..++.++..+..+++.++..-. |.+ |..
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~---~~~-~~~ 241 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG---GEE-PVL 241 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCC-CCc
Confidence 34444555555555544444443332211 1122334577888888888888888888888877774321 111 111
Q ss_pred cCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------hhhhcCh
Q 005010 284 NLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV---------KCLSSSK 354 (719)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~---------~~I~~S~ 354 (719)
...+ .+ ....-...+.+++.++.++..-- -.=|-....+..++..++..+... .....++
T Consensus 242 ~~~~--~~--~~~~l~~~l~~l~~~l~~l~~~y-------~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~ 310 (498)
T TIGR03007 242 LAGS--SV--ANSELDGRIEALEKQLDALRLRY-------TDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANP 310 (498)
T ss_pred Cccc--cc--CCCchHHHHHHHHHHHHHHHHHh-------cccChHHHHHHHHHHHHHHHHHhhccccccCcccccccCh
Confidence 1101 00 00111111344444444443322 222334444455555555544322 1111245
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHH
Q 005010 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEM 434 (719)
Q Consensus 355 ~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~ 434 (719)
.++.|...+..+.+++..++.....|+.....+......+ .....++..|+.+..--+..|+.+..
T Consensus 311 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--------------~~~~~el~~L~Re~~~~~~~Y~~l~~ 376 (498)
T TIGR03007 311 VYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTI--------------PEVEAELTQLNRDYEVNKSNYEQLLT 376 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766666666655555555444443332111 12356778888888888888888888
Q ss_pred HHHHHh
Q 005010 435 RLEEAS 440 (719)
Q Consensus 435 e~e~~~ 440 (719)
.++++.
T Consensus 377 r~eea~ 382 (498)
T TIGR03007 377 RRESAE 382 (498)
T ss_pred HHHHHH
Confidence 888843
No 137
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.84 E-value=28 Score=37.87 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 005010 323 LKGLHDGRIKVLQQLYNLQNTL 344 (719)
Q Consensus 323 Le~l~~e~~~L~~e~~~Lk~~l 344 (719)
|.+|-.++..|..++.+|+..|
T Consensus 221 LkKl~~eke~L~~qv~klk~qL 242 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQL 242 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444466667777777777666
No 138
>PRK11281 hypothetical protein; Provisional
Probab=83.61 E-value=1.4e+02 Score=38.20 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHh
Q 005010 642 YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANA 696 (719)
Q Consensus 642 ~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~ 696 (719)
.-++-+.|..|-+.|-.--+....++.+...+++....+.---..+..|+.-+.-
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~ 334 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKG 334 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445577888888888888888888888888888777777766666666655443
No 139
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.57 E-value=49 Score=32.78 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=22.5
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~ 444 (719)
+..+..+.-.+..+++.+..+...+.+...-.+
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge 37 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGE 37 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566777777777777777777777777444333
No 140
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.56 E-value=14 Score=31.23 Aligned_cols=65 Identities=23% Similarity=0.178 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
|..++..||..++.+--+...+...+..+..........+...-.+..+++.+++...+.|+..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777777777777777777666666666666666666666666666666665543
No 141
>PLN02939 transferase, transferring glycosyl groups
Probab=83.46 E-value=1.3e+02 Score=37.73 Aligned_cols=168 Identities=17% Similarity=0.173 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhhcCh----hHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 005010 320 LLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSK----AFLSVKNQLEKSKSEVFK-----------YQALFEKLQVE 383 (719)
Q Consensus 320 l~ELe~l~~e~~~L~~e~~~Lk~~l~~~-~~I~~S~----~yk~L~~q~~~lk~eld~-----------~r~~~ekLq~e 383 (719)
+.+|++...|.-.|..++.-|.|.|..- ..++-+. .-..|..|+..++.++-. +-.++..|..|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE 234 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHH
Confidence 4566677778888899999999888742 1111111 112445555444433322 11222222333
Q ss_pred HHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHH-HHHHHhhcHH
Q 005010 384 KDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAE-FRALVSSFPE 461 (719)
Q Consensus 384 r~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E-~r~Lissl~~ 461 (719)
.-.+...+ ++ +|.+..+. ++.+.++..||.+-+=+.+.--+|..+|-.+.++..+ .|..-| +=.=++.|+.
T Consensus 235 ~~~~~~~~-~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (977)
T PLN02939 235 NMLLKDDI-QF-LKAELIEV-----AETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQD 307 (977)
T ss_pred hHHHHHHH-HH-HHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHH
Confidence 22222222 22 23332222 1224566667776666777777788888776666665 333222 1122344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005010 462 DMSAMQRQLSKYKEAALDIHILRADVLSLTNVL 494 (719)
Q Consensus 462 ~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l 494 (719)
-...+..++..+--......-|+..+..+.+-+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (977)
T PLN02939 308 LLDRATNQVEKAALVLDQNQDLRDKVDKLEASL 340 (977)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 444444444444444444455555555555444
No 142
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.42 E-value=63 Score=33.94 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005010 461 EDMSAMQRQLSKYKEAALDIHILRADVLSLTNVL 494 (719)
Q Consensus 461 ~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l 494 (719)
++|.+|++|+.--.-.....+.|+.+.-+|+.-|
T Consensus 147 ErnAfLESELdEke~llesvqRLkdEardlrqel 180 (333)
T KOG1853|consen 147 ERNAFLESELDEKEVLLESVQRLKDEARDLRQEL 180 (333)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777444444455555565555555444
No 143
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.23 E-value=45 Score=32.13 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 005010 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV 347 (719)
Q Consensus 303 e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~ 347 (719)
+.|+.+++.+..-.+.--.+|..+..++..|.++++.+|.++..+
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333334455555555555555555555554444
No 144
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=83.10 E-value=31 Score=33.91 Aligned_cols=118 Identities=10% Similarity=0.071 Sum_probs=86.0
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCCchhh---hhhhhHHHHHHHHHHHHHHHHHhHHhH
Q 005010 151 QMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQK---ASSNLQSEVKNLRLALMDLHLKHKSLT 227 (719)
Q Consensus 151 ~~e~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~~~~d~~~~~---~~~~L~~E~~~Lq~~~~~L~~k~k~ls 227 (719)
.....|+.+.......+..+....+......+-....|.+. .+....+ ...-.-.+...++...+.+..+|..+.
T Consensus 15 R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~--~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e 92 (158)
T PF09486_consen 15 RRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAH--DARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAE 92 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666667777776666665555555444444432 0000011 122245577888899999999999999
Q ss_pred HHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005010 228 RELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRA 270 (719)
Q Consensus 228 ~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~ 270 (719)
.++..+++.+.....+|......|.-..+.++.+..+++++.-
T Consensus 93 ~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r 135 (158)
T PF09486_consen 93 AELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRR 135 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988873
No 145
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=82.36 E-value=88 Score=34.87 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=38.6
Q ss_pred hhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHHHH
Q 005010 411 TDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSS---FPEDMSAMQRQLSKYKEAALD 479 (719)
Q Consensus 411 ~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Liss---l~~~i~~Lk~Ev~R~Ke~~~e 479 (719)
++.....--.+|+++-+.+-.|+.++.....+.- ..+.+...|..+ |+.-..+|++++.+++..+..
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~--ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ 197 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRR--QLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQ 197 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667788888888888888777554433 334444443332 333345666666666544333
No 146
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.29 E-value=96 Score=35.21 Aligned_cols=204 Identities=14% Similarity=0.053 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCC
Q 005010 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGN 287 (719)
Q Consensus 208 E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~ 287 (719)
+...|+..+..+...+..+..++....+.+...+..|.++...|..+...-..-+.+|+.+-.= ..-.|-+.|..-
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A-~~r~g~~p~~~l--- 135 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAA-LQRSGRNPPPAL--- 135 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCCCchh---
Confidence 3444455555555555555555555555555556666666666666655553334444443211 011122211110
Q ss_pred CCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHH
Q 005010 288 KHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSK 367 (719)
Q Consensus 288 ~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk 367 (719)
-..++.+.. ...+. -=+..++..|...++.|......|...-..+-.+-... +..-.....|-..+.
T Consensus 136 -l~~~eda~~----~~R~a---i~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l-----~~~~~eq~~q~~kl~ 202 (420)
T COG4942 136 -LVSPEDAQR----SVRLA---IYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAEL-----TTLLSEQRAQQAKLA 202 (420)
T ss_pred -hcChhhhhH----HHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 011111100 11111 11233334444444444433333333222222221111 011112333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 368 SEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 368 ~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
..+.+-.....+|+.+......+..++. ... ..++..|..++...++.|..++--++.-..
T Consensus 203 ~~~~E~kk~~~~l~~~l~~~q~~l~eL~---------~~~-~~L~~~Ias~e~~aA~~re~~aa~~aa~~~ 263 (420)
T COG4942 203 QLLEERKKTLAQLNSELSADQKKLEELR---------ANE-SRLKNEIASAEAAAAKAREAAAAAEAAAAR 263 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666654542 111 224678888888888888887755544444
No 147
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=82.11 E-value=65 Score=33.13 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 005010 447 EIIAEFRALVSSFPEDMSAMQRQLSKY 473 (719)
Q Consensus 447 ~~~~E~r~Lissl~~~i~~Lk~Ev~R~ 473 (719)
..+.+|+.++..+..-|.+|=++..+-
T Consensus 37 ~~~~~m~~i~~e~Ek~i~~~i~e~~~~ 63 (207)
T PF05010_consen 37 KENQEMRKIMEEYEKTIAQMIEEKQKQ 63 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445567777777777777766665433
No 148
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.79 E-value=29 Score=32.51 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=36.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005010 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN 395 (719)
Q Consensus 353 S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~ 395 (719)
+..+..|.+++..+..++..++..+..|+.+|+.+...+-.++
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999988874544
No 149
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=81.70 E-value=31 Score=38.86 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005010 320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID 399 (719)
Q Consensus 320 l~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E 399 (719)
+.||.+++..+..|...++.|+.++... +.-..+.||.||.-+.+-+..++ |
T Consensus 218 ~~el~eik~~~~~L~~~~e~Lk~~~~~e-------------------------~~~~~~~LqEEr~R~erLEeqlN---d 269 (395)
T PF10267_consen 218 LEELREIKESQSRLEESIEKLKEQYQRE-------------------------YQFILEALQEERYRYERLEEQLN---D 269 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHhHHHHHHHHHHHH---H
Confidence 4466666677777777777776653311 11222335555555555433333 5
Q ss_pred hHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHH
Q 005010 400 LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQ 467 (719)
Q Consensus 400 ~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk 467 (719)
..++++..+..++..++..|..++=.- -.-.++|...++++++||..|+
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Yqs-------------------~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAYQS-------------------YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-------------------HHHHhHHHHHHHHHHHHHHHHH
Confidence 555553333333333333332222111 2345678889999999999999
No 150
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=81.52 E-value=12 Score=33.52 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHH
Q 005010 509 ADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAI 588 (719)
Q Consensus 509 ~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~ 588 (719)
......+..|.+++.++++ ++|.-|. ++|. +..++..|+..+.+... -+..+.+.|..
T Consensus 27 ~~lE~k~~rl~~Ek~kadq-----kyfa~mr---~~d~------------l~~e~k~L~~~~~Ks~~--~i~~L~~~E~~ 84 (96)
T PF08647_consen 27 TILEQKKLRLEAEKAKADQ-----KYFAAMR---SKDA------------LDNEMKKLNTQLSKSSE--LIEQLKETEKE 84 (96)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHH---hHHH------------HHHHHHHHHHHHHHhHH--HHHHHHHHHHH
Confidence 3445667788888888888 7888887 3344 67788888888876543 34455566666
Q ss_pred HHHHHHhHHH
Q 005010 589 SQQRLAAAEA 598 (719)
Q Consensus 589 ~~~kl~~~e~ 598 (719)
..++|..+|-
T Consensus 85 ~~~~l~~~Ek 94 (96)
T PF08647_consen 85 FVRKLKNLEK 94 (96)
T ss_pred HHHHHHHhhc
Confidence 7777666653
No 151
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.37 E-value=56 Score=34.59 Aligned_cols=64 Identities=14% Similarity=0.350 Sum_probs=48.0
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPG--RKEIIAEFRALVSSFPEDMSAMQRQLSKYKE 475 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~--k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke 475 (719)
..++..+...+++++.+++.|+.+++....... .......++.-+..++.++..++..+.+.+.
T Consensus 19 ~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~ 84 (302)
T PF10186_consen 19 NNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRK 84 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888899999999999999999999666322 3456667777777777888887777765553
No 152
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.92 E-value=68 Score=35.78 Aligned_cols=69 Identities=6% Similarity=0.089 Sum_probs=52.1
Q ss_pred HHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 005010 502 ETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSL 570 (719)
Q Consensus 502 ~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L 570 (719)
.....+|.....-|..+..++....+....+|.-++-.+...+|.+.++.+.+|=.+++.|+..+--+|
T Consensus 283 s~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 283 SEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333445566667777888888888888888888888899999999999998777777777766655444
No 153
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.88 E-value=52 Score=37.85 Aligned_cols=22 Identities=32% Similarity=0.247 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 005010 583 IEAEAISQQRLAAAEAEIADMR 604 (719)
Q Consensus 583 ~e~e~~~~~kl~~~e~ei~~Lr 604 (719)
.+..|+|.+.+..+++++..||
T Consensus 281 eDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 281 EDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344578888888888888877
No 154
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.69 E-value=18 Score=42.42 Aligned_cols=90 Identities=26% Similarity=0.327 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHH
Q 005010 510 DQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAIS 589 (719)
Q Consensus 510 ~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~ 589 (719)
.....|+.+...++.+...+.+|+..++-++ .+++.|+.+|+....+.+.+...
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k--------------------~eie~L~~~l~~~~r~~~~~~~~------ 472 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELK--------------------REIEKLESELERFRREVRDKVRK------ 472 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHhh------
Confidence 3345677777777788888888877766553 34555555555544433333332
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhH
Q 005010 590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKN 625 (719)
Q Consensus 590 ~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~ 625 (719)
.+.+...+.+|+.|+++|...+..+..|...|....
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 256778888899999998888777777776555443
No 155
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.74 E-value=56 Score=31.41 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=57.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCCch-hhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhh
Q 005010 158 TGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSK-QKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDI 236 (719)
Q Consensus 158 ~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~~~~d~~~-~~~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~ 236 (719)
.....+-.+|..|+...+.-....+.+...+.... .|... ......|...+..++..+..++.++..+..++..+...
T Consensus 31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~-~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~ 109 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLR-SDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK 109 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666655555555554444321 01000 11444556666666666666666666666666666666
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 237 DAKDKAKLNRLKGELESAVKELEECNC 263 (719)
Q Consensus 237 ~~~~~~e~~~L~~eLe~~~~elek~~r 263 (719)
+-....++..+...+......+..-.|
T Consensus 110 ~k~~kee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 110 LKQEKEELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555555544444
No 156
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.35 E-value=1.8e+02 Score=36.59 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=24.8
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~ 444 (719)
.+.+..++.++.-|-..+.+...+++...+..|
T Consensus 323 ~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg 355 (1141)
T KOG0018|consen 323 KETIERLEKELKAVEGAKEEFEKEIEERSQERG 355 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456677777777788888888888888777555
No 157
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.17 E-value=1.3e+02 Score=34.80 Aligned_cols=180 Identities=15% Similarity=0.197 Sum_probs=111.4
Q ss_pred hhHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCc-------hhHHHHHHHHHHHHHHHHHHHhhhhh
Q 005010 500 ECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDS-------RDVLAARDLEYKAWAHVHSLKSSLDE 572 (719)
Q Consensus 500 e~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~-------rd~~~~~~~E~~~~ae~~~Lk~~L~e 572 (719)
....|.+.+....+.|..|+-++....+ +|-.|....-+. +..+- .|-+.
T Consensus 98 ~nesLeEqv~~~~d~vvql~hels~k~e-------llr~ys~~~ees~~~~v~~~P~~~---~~s~S------------- 154 (596)
T KOG4360|consen 98 DNESLEEQVDAPWDRVVQLGHELSRKDE-------LLRGYSAAIEESEAASVCSTPLVS---NESRS------------- 154 (596)
T ss_pred hhhhhHhhhcchHHHHHHhhhhhhhhhh-------hhheeeeccccccccccccCCCcc---Ccchh-------------
Confidence 3555666667778888899999888776 566665544443 11100 00000
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHH-HHHHHHHHHHHHHHhHHHHHHHHHH
Q 005010 573 QSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNE-EIEAYLSEIETIGQSYDDMQTQNQQ 651 (719)
Q Consensus 573 ~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~-e~~al~~Eie~~gqA~edmq~Qn~~ 651 (719)
.....+.| ..+.||...+.++..||.+..-.+..-....+ +++ --..+..|..-+-.+.--||+.-+.
T Consensus 155 ----~~~~~~~E---aL~ekLk~~~een~~lr~k~~llk~Et~~~~~----keq~~y~~~~KelrdtN~q~~s~~eel~~ 223 (596)
T KOG4360|consen 155 ----AFQRELLE---ALQEKLKPLEEENTQLRSKAMLLKTETLTYEE----KEQQLYGDCVKELRDTNTQARSGQEELQS 223 (596)
T ss_pred ----hHHHHHHH---HHHhhcCChHHHHHHHHHHHHHHHhhhcchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111222 45667888888888888877666432222211 111 2224456777777888888888888
Q ss_pred HHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhh
Q 005010 652 LLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQVC 713 (719)
Q Consensus 652 ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~ 713 (719)
+..++.-.-+-|.|||++-+-.+-+.+.+..||+.+..-++...-.-+-.......+|||.-
T Consensus 224 kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA 285 (596)
T KOG4360|consen 224 KTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA 285 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888888888888998888888888889999988876555444333333344445555543
No 158
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.28 E-value=98 Score=32.89 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=49.7
Q ss_pred HHhhcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHhhhhhhHHhhh----cchhHHHHHHHHHHHHHhhhhhH
Q 005010 455 LVSSFPEDMSAMQRQLSKYKE-AALDIHILRADVLSLTNVLERKVKECETLLA----SSADQVAEIHKLQAMVQDLTDSN 529 (719)
Q Consensus 455 Lissl~~~i~~Lk~Ev~R~Ke-~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~----~~~~~~~~ik~Lk~~l~ka~~~~ 529 (719)
|-.+-.+++.+++++++.|++ ..+.++.|..+++.+.+.+.....|+..|+. .|..-.-.|..|..++..+..++
T Consensus 57 le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~q 136 (258)
T PF15397_consen 57 LEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQ 136 (258)
T ss_pred HHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888888864 4467777777777777666554455554432 12222345666666666555432
Q ss_pred -HHHHHHHHHH
Q 005010 530 -LELKLILDMY 539 (719)
Q Consensus 530 -~elkl~ldmy 539 (719)
.||--+-.|+
T Consensus 137 qdEldel~e~~ 147 (258)
T PF15397_consen 137 QDELDELNEMR 147 (258)
T ss_pred HHHHHHHHHHH
Confidence 3444444444
No 159
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.27 E-value=1.6e+02 Score=35.35 Aligned_cols=143 Identities=14% Similarity=0.152 Sum_probs=68.5
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhhhhcH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---------Hhhh
Q 005010 550 LAARDLEY-KAWAHVHSLKSSLDEQSL-----ELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAF---------KRDM 614 (719)
Q Consensus 550 ~~~~~~E~-~~~ae~~~Lk~~L~e~~~-----~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~---------~~~~ 614 (719)
+....... ++..++.+|.+.|....- ......+++--..+.+++..++.+...||..+.-. .=.+
T Consensus 463 i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rV 542 (716)
T KOG4593|consen 463 ITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRV 542 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccce
Confidence 33333343 788889999988843211 11111223323355566666666666666332211 0000
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHH
Q 005010 615 VSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA 694 (719)
Q Consensus 615 ~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~ 694 (719)
.-+...+.++-. ...-+-.+.+|-.|.+|.--+++..+++...-...|-..-.+.- -.|...|..++..+
T Consensus 543 l~~~~npt~~~~---------~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~-~~ev~qlk~ev~s~ 612 (716)
T KOG4593|consen 543 LHMSTNPTSKAR---------QIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAF-SKEVAQLKKEVESA 612 (716)
T ss_pred eeecCCchHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcc-hHHHHHHHHHHHHH
Confidence 000111110000 01123345677778888888888888877666555554333322 23444444444444
Q ss_pred HhhHhhHH
Q 005010 695 NASLNFFD 702 (719)
Q Consensus 695 ~~~~e~~~ 702 (719)
+--..+++
T Consensus 613 ekr~~rlk 620 (716)
T KOG4593|consen 613 EKRNQRLK 620 (716)
T ss_pred HHHHHHHH
Confidence 44444443
No 160
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.77 E-value=69 Score=30.88 Aligned_cols=112 Identities=19% Similarity=0.269 Sum_probs=71.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 005010 591 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEG 670 (719)
Q Consensus 591 ~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~ 670 (719)
++...++.+|..|..++...+.++..+...|...+. .+.+.+..++..|.++..++-|=.+|-.- +.+++-..++
T Consensus 28 ~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~----~lee~~~~~~~~E~l~rriq~LEeele~a-e~~L~e~~ek 102 (143)
T PF12718_consen 28 QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE----KLEESEKRKSNAEQLNRRIQLLEEELEEA-EKKLKETTEK 102 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHhHHHHHhhHHHHHHHHHHH-HHHHHHHHHH
Confidence 566778888888888888888777777776654443 45566777777776666655555554333 3444555555
Q ss_pred HhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhh
Q 005010 671 VRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQVC 713 (719)
Q Consensus 671 ~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~ 713 (719)
+. -+--.-+.++.+++.+....+..-.++..++.+.+
T Consensus 103 l~------e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 103 LR------EADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HH------HHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 54 22233345666677777777777777776666644
No 161
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=77.35 E-value=1.3e+02 Score=33.67 Aligned_cols=224 Identities=20% Similarity=0.268 Sum_probs=112.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhhhhchHHHHhhhhhhhhhHHHHhhH
Q 005010 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWR------------ETELNMKIDLVDVFRRSSAVTDSKIADLGI 420 (719)
Q Consensus 353 S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~------------~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~ 420 (719)
++-...|...++.|+++++-.|...+.+|...-..... ++-|- +.++-+++++. .=--+.+-
T Consensus 290 sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfA---aMEetHQkkiE---dLQRqHqR 363 (593)
T KOG4807|consen 290 SDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFA---AMEETHQKKIE---DLQRQHQR 363 (593)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHH---HHHHHHHHHHH---HHHHHHHH
Confidence 44556888888888888888888877777665443220 01111 12222333322 12234566
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 005010 421 EIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKE 500 (719)
Q Consensus 421 ~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e 500 (719)
.|.++|.++|-|.++-.- ..+.-|.+|-++-+ ..|..|+.+-+-..++...||....
T Consensus 364 ELekLreEKdrLLAEETA--------ATiSAIEAMKnAhr---EEmeRELeKsqSvnsdveaLRrQyl------------ 420 (593)
T KOG4807|consen 364 ELEKLREEKDRLLAEETA--------ATISAIEAMKNAHR---EEMERELEKSQSVNSDVEALRRQYL------------ 420 (593)
T ss_pred HHHHHHHHHHhhhhhhhh--------hhhHHHHHHHHHHH---HHHHHHHHhhhccccChHHHHHHHH------------
Confidence 788899999988876432 22233333433333 3455666666555455555553321
Q ss_pred hHHhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHH
Q 005010 501 CETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVK 580 (719)
Q Consensus 501 ~~~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk 580 (719)
+++..+ +.||.++-+-|...+-+..-.++...+|+.+--+-..=-+.|-.|+.++
T Consensus 421 ------------eelqsv----------qRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQEL--- 475 (593)
T KOG4807|consen 421 ------------EELQSV----------QRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQEL--- 475 (593)
T ss_pred ------------HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---
Confidence 111111 2234444444544444443344333333222111111111222233322
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhH
Q 005010 581 TAIEAEAISQQRLAAAEAEIADMRQKLE----------AFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSY 642 (719)
Q Consensus 581 ~~~e~e~~~~~kl~~~e~ei~~Lr~~l~----------~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~ 642 (719)
| -| +-+||..||.-+. +..++..+|.--|..|+.|..-|..||-.+-...
T Consensus 476 --n-------nR---LaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDEL 535 (593)
T KOG4807|consen 476 --N-------NR---LAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDEL 535 (593)
T ss_pred --h-------hH---HHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 1 12 2246777776654 2345566777777777777777777776665433
No 162
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.34 E-value=38 Score=28.87 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRET 392 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~ 392 (719)
..++.|......+...+..|++++. -|+.+...+..++..++...++|+.++.++..++.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~e------------eLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENE------------ELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778888887777754 45555556666677777777777777777776653
No 163
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=76.32 E-value=1.8e+02 Score=34.97 Aligned_cols=410 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhh--ccCCCchhh--hhhhhHHHHHHHHHHHHHHHHHhHHhHHH
Q 005010 154 EDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD--LQDGGSKQK--ASSNLQSEVKNLRLALMDLHLKHKSLTRE 229 (719)
Q Consensus 154 ~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~--~~~d~~~~~--~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e 229 (719)
+.|++-.+.++..+..-++.+..++.-+ |. |++..+..- .-..|..-+..|+.+-+.||.-.--+.+.
T Consensus 200 d~L~~qLsk~~~~le~q~tlv~~LR~Yv--------Geq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVR 271 (739)
T PF07111_consen 200 DLLREQLSKTQEELEAQVTLVEQLRKYV--------GEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVR 271 (739)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH--------hhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhhHHhH-----------------------------------------------HHHHHHHHHHHHHHHHHHHHH
Q 005010 230 LQSRQDIDAKDK-----------------------------------------------AKLNRLKGELESAVKELEECN 262 (719)
Q Consensus 230 ~~~l~d~~~~~~-----------------------------------------------~e~~~L~~eLe~~~~elek~~ 262 (719)
++.+.+.++..+ ..+.+|.+++..++.++....
T Consensus 272 vqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~ 351 (739)
T PF07111_consen 272 VQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQ 351 (739)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhcccCCccccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005010 263 CKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQN 342 (719)
Q Consensus 263 rkL~~lk~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~ 342 (719)
..-+-|.-- ++|=.++++=-+--+..-..+|...+..+..+.+++...-.
T Consensus 352 qEqaiLq~S------------------------------LqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee 401 (739)
T PF07111_consen 352 QEQAILQHS------------------------------LQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEE 401 (739)
T ss_pred HHHHHHHHH------------------------------HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcccc-hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhH
Q 005010 343 TLKSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ-VEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGI 420 (719)
Q Consensus 343 ~l~~~-~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq-~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~ 420 (719)
.++.+ ++|.++..+ |..++..++..+.++..+-..|- +-+.-+.-+ --+.-|.-...+.......+-..+.++..
T Consensus 402 ~Lk~v~eav~S~q~~--L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiq-GL~Ark~Alaqlrqe~~~~~pp~~~dL~~ 478 (739)
T PF07111_consen 402 QLKLVSEAVSSSQQW--LESQMAKVEQALARLPSLSNRLSYAVRRVHTIQ-GLMARKLALAQLRQEQCPPSPPSVTDLSL 478 (739)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHhcccchhH-HHHHHHHHHHHHHhccCCCCCCchhhHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 005010 421 EIQKQIDEKNRIEMRLEEASREPGR--KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKV 498 (719)
Q Consensus 421 ~LarvR~ere~L~~e~e~~~~~~~k--~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~ 498 (719)
.|.+||.+||-|-+++....+=..+ +..-.++.+=.-.|.....+|+..+..+.+. +..+...+.-...-+..++
T Consensus 479 ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~---la~l~~QL~~Ar~~lqes~ 555 (739)
T PF07111_consen 479 ELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQES---LAELEEQLEAARKSLQEST 555 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHH
Q ss_pred hhhHHhhhcchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHH
Q 005010 499 KECETLLASSADQV-AEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLEL 577 (719)
Q Consensus 499 ~e~~~l~~~~~~~~-~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~ 577 (719)
.+...+...+..+- .|-+.|...+. .-|.+++..+.++..+|.+..+
T Consensus 556 eea~~lR~EL~~QQ~~y~~alqekvs------------------------------evEsrl~E~L~~~E~rLNeARR-- 603 (739)
T PF07111_consen 556 EEAAELRRELTQQQEVYERALQEKVS------------------------------EVESRLREQLSEMEKRLNEARR-- 603 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005010 578 RVKTAIEAEAISQQRLA-AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQI 656 (719)
Q Consensus 578 rvk~~~e~e~~~~~kl~-~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql 656 (719)
.--+|--+-+-.+++.. .++---+-++.+-++.+.....|...+...+..-+-++ ++++.-|
T Consensus 604 EHtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqelerdkNl~l-----------------~rl~~~l 666 (739)
T PF07111_consen 604 EHTKAVVSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQELERDKNLML-----------------QRLLAVL 666 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------------HHHHHhc
No 164
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.14 E-value=1.1e+02 Score=32.27 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHH
Q 005010 354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN--MKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNR 431 (719)
Q Consensus 354 ~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~--~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~ 431 (719)
+.|+....+-..|+--.-.|..-+...+.|.+.|..--+|.. +..+. ..++++.-+++.+-+|++-+-+-
T Consensus 6 ~~fss~~eE~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL--------~q~etrnrdl~t~nqrl~~E~e~ 77 (333)
T KOG1853|consen 6 KTFSSDLEEDQYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQL--------DQLETRNRDLETRNQRLTTEQER 77 (333)
T ss_pred ccccchhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666555666665544323332 11111 11244445555555555444444
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 005010 432 IEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (719)
Q Consensus 432 L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~ 473 (719)
+.-+++ ....++-.-++.|...+.++.....-+
T Consensus 78 ~Kek~e---------~q~~q~y~q~s~Leddlsqt~aikeql 110 (333)
T KOG1853|consen 78 NKEKQE---------DQRVQFYQQESQLEDDLSQTHAIKEQL 110 (333)
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333 333344445556666665555544333
No 165
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.89 E-value=38 Score=34.76 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=10.9
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 005010 591 QRLAAAEAEIADMRQKLEAF 610 (719)
Q Consensus 591 ~kl~~~e~ei~~Lr~~l~~~ 610 (719)
.+++.++.+++.|+.+++..
T Consensus 93 ~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554
No 166
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.68 E-value=2.4e+02 Score=36.00 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHH-HHHHHHHHHHhhhh
Q 005010 510 DQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEY-KAWAHVHSLKSSLD 571 (719)
Q Consensus 510 ~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~-~~~ae~~~Lk~~L~ 571 (719)
-..+.|..|..+|+..-.+......+|..-+. .-+.++-+.+++ +++...+.++...+
T Consensus 1508 ~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~----di~ra~~L~s~A~~a~~~A~~v~~~ae 1566 (1758)
T KOG0994|consen 1508 LTPEQIQQLTGEIQERVASLPNVDAILSRTKG----DIARAENLQSEAERARSRAEDVKGQAE 1566 (1758)
T ss_pred CCHHHHHHHHHHHHHHHHhcccHHHHHHhhhh----hHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34578888888888888888888888765543 223444455555 66666666666543
No 167
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.32 E-value=1.5e+02 Score=33.55 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005010 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKL 666 (719)
Q Consensus 625 ~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl 666 (719)
..-...|..||+..+|+ .|+|-+-+.++-||+|
T Consensus 448 ~~~~~Slaaeid~~sqd---------eLmqafqeqeeiNfRL 480 (502)
T KOG0982|consen 448 FSLFFSLAAEIDEMSQD---------ELMQAFQEQEEINFRL 480 (502)
T ss_pred HHHHHHHHHHHHHHhHH---------HHHHHHHHHHHhhhHH
Confidence 44566788899988875 4778888888888876
No 168
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=75.08 E-value=1.6e+02 Score=33.71 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005010 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS 346 (719)
Q Consensus 303 e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~ 346 (719)
-+|+..+--++.-...+-..+..|+-.|.-|.+.+..||++.-.
T Consensus 313 maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~k 356 (527)
T PF15066_consen 313 MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITK 356 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhh
Confidence 34666777777777778888999999999999999999998653
No 169
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.58 E-value=87 Score=34.11 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq 381 (719)
+.+|...+.|+.+--.+-+..--.|-.+...+.-++..||.+|.+. ...|-.++.++..-..++++.+..+..|+
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~-----eE~~~~~~re~~eK~~elEr~K~~~d~L~ 153 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL-----EETLAQLQREYREKIRELERQKRAHDSLR 153 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888877777777777777788888888888888887765 13344555555555555555555555566
Q ss_pred HHHHHHHHHH
Q 005010 382 VEKDNLAWRE 391 (719)
Q Consensus 382 ~er~~~~~~~ 391 (719)
.+++.++.++
T Consensus 154 ~e~~~Lre~L 163 (302)
T PF09738_consen 154 EELDELREQL 163 (302)
T ss_pred HHHHHHHHHH
Confidence 6665555554
No 170
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=73.55 E-value=2.4e+02 Score=34.95 Aligned_cols=48 Identities=19% Similarity=0.395 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Q 005010 49 KLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDL 96 (719)
Q Consensus 49 kL~rqLe~~kre~~~Le~rie~Le~rq~~~d~~L~~Vnr~W~QL~ddi 96 (719)
.|.+-..+++...+-++..++.|+.|..+-++...-+..-|+-+.+.+
T Consensus 554 r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l 601 (984)
T COG4717 554 RIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDEL 601 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 444445567888899999999999999999999988899998887776
No 171
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=73.28 E-value=1.6e+02 Score=32.89 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005010 316 ASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN 395 (719)
Q Consensus 316 a~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~ 395 (719)
.+.-+.||++..+-...|..-.+.||..+.- . |.=.++.||.||--+-+-+..++
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~kr--------d-----------------y~fi~etLQEERyR~erLEEqLN 316 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKR--------D-----------------YKFIAETLQEERYRYERLEEQLN 316 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-----------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667777777777777777777665431 1 12223346777766666554454
Q ss_pred hhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHH
Q 005010 396 MKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQL 470 (719)
Q Consensus 396 ~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev 470 (719)
+..++++..+++++.+++-+|...+=. .++ --+++..-++|++.||.-|+...
T Consensus 317 ---dlteLqQnEi~nLKqElasmeervaYQ----------------syE---RaRdIqEalEscqtrisKlEl~q 369 (455)
T KOG3850|consen 317 ---DLTELQQNEIANLKQELASMEERVAYQ----------------SYE---RARDIQEALESCQTRISKLELQQ 369 (455)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666666666666555544332 222 23566677889999988776544
No 172
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.18 E-value=1e+02 Score=30.63 Aligned_cols=62 Identities=11% Similarity=0.383 Sum_probs=33.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005010 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLL 653 (719)
Q Consensus 592 kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll 653 (719)
.+.....++.+++..+.........++.......+....+..+++.+-..|..|.+.-..+.
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444445555666666666666666666665555
No 173
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.16 E-value=83 Score=29.54 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=54.4
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 005010 593 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEE---IEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLE 669 (719)
Q Consensus 593 l~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e---~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E 669 (719)
|+..|.|+..|+..+......-..+...|.....+ ..+...++..+-.-+.+++.....+|+=+.||.+.+--|-.+
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~D 104 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34444455555555444444444444443333333 356677888888889999999999999999999888776655
Q ss_pred hHhhhhHHH
Q 005010 670 GVRARQLQD 678 (719)
Q Consensus 670 ~~ka~q~~~ 678 (719)
=.--+.+|+
T Consensus 105 v~DlK~myr 113 (120)
T PF12325_consen 105 VQDLKEMYR 113 (120)
T ss_pred HHHHHHHHH
Confidence 444444443
No 174
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=72.90 E-value=2.7e+02 Score=35.29 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Q 005010 50 LVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNK 87 (719)
Q Consensus 50 L~rqLe~~kre~~~Le~rie~Le~rq~~~d~~L~~Vnr 87 (719)
+..-+++-+..+..++..|.-++++...+...|..++.
T Consensus 219 ~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~ 256 (1074)
T KOG0250|consen 219 IMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ 256 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777777777777777776665554
No 175
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.13 E-value=2e+02 Score=33.60 Aligned_cols=191 Identities=14% Similarity=0.193 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCCCCCCCCCc---cchhh------hhhhHHHHHHHH
Q 005010 242 AKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRV---RDEQR------DLRDMESVHKEL 312 (719)
Q Consensus 242 ~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~------~~e~L~~eleE~ 312 (719)
.+...|+-+++++..+|+.++..++-++.-.......+..... .|- ....+ .+.++ .+-+|+.++..+
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~--~g~-e~EesLLqESaakE~~yl~kI~eleneLKq~ 119 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVAR--DGE-EREESLLQESAAKEEYYLQKILELENELKQL 119 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cch-hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888887666211111001100000 000 00000 11111 146777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhhcC--------hhHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 005010 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSS--------KAFLSVKNQLEKSKSEVFKYQAL---FEKL 380 (719)
Q Consensus 313 k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~-~~I~~S--------~~yk~L~~q~~~lk~eld~~r~~---~ekL 380 (719)
+....+--.|.+.+...+..+..-+..+..+..-+ +-|++. ..|+-|..+.-.|..++.-+|.- ++-|
T Consensus 120 r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEgl 199 (772)
T KOG0999|consen 120 RQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGL 199 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHH
Confidence 77666666666666666666655444433332211 222211 24444443333344444444332 2222
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 381 QVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 381 q~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
..+..-+-.. .|+ ++.-.+++ .+....++.++.+.=.+|+.=|..+.-|+-++.+
T Consensus 200 kheikRleEe-~el-ln~q~ee~-~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 200 KHEIKRLEEE-TEL-LNSQLEEA-IRLKEIAEKQLEEALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred HHHHHHHHHH-HHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2222211111 122 11112232 2323335777877777888999999999999988
No 176
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=70.57 E-value=2.8e+02 Score=34.49 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=27.6
Q ss_pred HHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHH
Q 005010 423 QKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQR 468 (719)
Q Consensus 423 arvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~ 468 (719)
.++.+++.+...+..+.+...- +..+.+++-|....+.|..+|..
T Consensus 1109 ~~~~kdK~e~er~~rE~n~s~i-~~~V~e~krL~~~~~k~~e~L~k 1153 (1189)
T KOG1265|consen 1109 DKVIKDKAERERRKRELNSSNI-KEFVEERKRLAEKQSKRQEQLVK 1153 (1189)
T ss_pred ccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333332 47788888888888888888864
No 177
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.51 E-value=2.2e+02 Score=33.42 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 322 ELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (719)
Q Consensus 322 ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~ 391 (719)
|+++-..|+..|..++..|+..+.+-.+- ...|.. +..+..+....+.+++.+++.+...+
T Consensus 302 Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS--~~dve~-------mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 302 EIEEKEEEIEKLQKENDELKKQIELQGIS--GEDVER-------MNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666665533111 233334 44455555556666777777777665
No 178
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.46 E-value=24 Score=34.69 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=48.5
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKE 475 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke 475 (719)
+.++.+|..++..+..+.-.|++++...... |++.||+..|..+..++..|++.+..++.
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~----~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSE----PTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777788888888888888887776554 66899999999999999999988877765
No 179
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=70.20 E-value=2.1e+02 Score=32.87 Aligned_cols=189 Identities=23% Similarity=0.279 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhHHhhhcchh---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCc
Q 005010 470 LSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSAD---QVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDS 546 (719)
Q Consensus 470 v~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~~l~~~~~~---~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~ 546 (719)
+.|+|.+...-...-.+++.-...|..+..| |.-...+ -++.|.+|+.-+..|-+ |-|+-
T Consensus 319 L~kLk~tn~kQq~~IqdLq~sN~yLe~kvke---LQ~k~~kQqvfvDiinkLk~niEeLIe---------dKY~v----- 381 (527)
T PF15066_consen 319 LQKLKHTNRKQQNRIQDLQCSNLYLEKKVKE---LQMKITKQQVFVDIINKLKENIEELIE---------DKYRV----- 381 (527)
T ss_pred HHHHHhhhHHHHHHHHHhhhccHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHH---------hHhHh-----
Confidence 3566655554444455555555666555433 2222222 25788888888776655 33321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhh---
Q 005010 547 RDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKS--- 623 (719)
Q Consensus 547 rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~--- 623 (719)
- |++-+.+-..+.+.++-+..|..|.....+...|+.+|...+-.-.-|+++-..
T Consensus 382 -------------i---------LEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQ 439 (527)
T PF15066_consen 382 -------------I---------LEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQ 439 (527)
T ss_pred -------------h---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 0 111111113344566666777788888888888888888877666666653222
Q ss_pred hHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhh-hHHHHHHHhHHHHHHHHHHHHhhHhhH
Q 005010 624 KNEEIEAYLSEIETIGQSY-DDMQTQNQQLLQQITERDDYNIKLVLEGVRAR-QLQDALLMDKHMMESEIQQANASLNFF 701 (719)
Q Consensus 624 ~~~e~~al~~Eie~~gqA~-edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~-q~~~~l~~ek~~l~~~~~~~~~~~e~~ 701 (719)
.+...-.+.-||+.+---- |+++ -||+++..=+ ||- .....|.+||+..+.+...++ .|.|
T Consensus 440 qKnksvsqclEmdk~LskKeeeve-----rLQ~lkgelE----------kat~SALdlLkrEKe~~EqefLslq--eEfQ 502 (527)
T PF15066_consen 440 QKNKSVSQCLEMDKTLSKKEEEVE-----RLQQLKGELE----------KATTSALDLLKREKETREQEFLSLQ--EEFQ 502 (527)
T ss_pred HhhhHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 1222333555666543222 2222 2455553322 222 345678899999999887775 5677
Q ss_pred HHHHHHHHhhhhh
Q 005010 702 DMKAARIENQVCL 714 (719)
Q Consensus 702 ~~~~~~~e~~~~~ 714 (719)
+-.-.+|+|..++
T Consensus 503 k~ekenl~ERqkL 515 (527)
T PF15066_consen 503 KHEKENLEERQKL 515 (527)
T ss_pred HHHHhhHHHHHHH
Confidence 7777778777654
No 180
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.96 E-value=27 Score=29.82 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=50.1
Q ss_pred HHHHHhhhhhhhhhHHHHHh-------HhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhh
Q 005010 651 QLLQQITERDDYNIKLVLEG-------VRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQVC 713 (719)
Q Consensus 651 ~ll~ql~e~dd~n~kl~~E~-------~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~ 713 (719)
.+...|+|+|+....||.|+ .+-++..+.|+-....++.++..+...++.....+..+++..+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667889999988888887 4566777888888888888888888888888888888877654
No 181
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=69.26 E-value=55 Score=29.80 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=35.4
Q ss_pred HHHHH-HHHHHHHHHHhhh-hhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Q 005010 553 RDLEY-KAWAHVHSLKSSL-DEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDAL 621 (719)
Q Consensus 553 ~~~E~-~~~ae~~~Lk~~L-~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l 621 (719)
++.|| |+|+++..||+.+ ++.. ....+.+.-....+-|+..+.|++-|.=..+...+.+..|...+
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~---k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQA---KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666 8999999999986 3321 11122222222334455555566666555555544444444433
No 182
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.06 E-value=79 Score=34.54 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=12.7
Q ss_pred HHHHhHHHHHHHHHHHHhhHhhHH
Q 005010 679 ALLMDKHMMESEIQQANASLNFFD 702 (719)
Q Consensus 679 ~l~~ek~~l~~~~~~~~~~~e~~~ 702 (719)
.+..+.+.+..++..+..+++++.
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 183
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.76 E-value=73 Score=34.82 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q 005010 642 YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIEN 710 (719)
Q Consensus 642 ~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~ 710 (719)
.+.++.++..+.+++...+..-..+-.+-.+--..+..+..+...+.++...++.+++.....+.+|..
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444555677788888888999999999999888888888764
No 184
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=68.49 E-value=61 Score=29.23 Aligned_cols=64 Identities=25% Similarity=0.364 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhh---hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQD---IDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d---~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~l 268 (719)
+-.+...++..++.|+++...++.++..+.. .......+.+.++.++.++..++..+..++..+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667778888888888888888888876 366677788888888888887777777766544
No 185
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.84 E-value=2.6e+02 Score=33.07 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETEL 394 (719)
Q Consensus 354 ~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~ 394 (719)
..|..++..+..++..+.+++.....++.+.+-+..++.|+
T Consensus 161 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 161 KAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777777777777777777665
No 186
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.83 E-value=1.3e+02 Score=29.80 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 307 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (719)
Q Consensus 307 ~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq 381 (719)
.++.+.....+.-..||+++......+..++..++...... ...++.+...+..+...+..+...+..++
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL-----RELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666666554433 13444555555555555555555555555
No 187
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=67.44 E-value=1.2e+02 Score=29.19 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhhh
Q 005010 512 VAEIHKLQAMVQDLTDS 528 (719)
Q Consensus 512 ~~~ik~Lk~~l~ka~~~ 528 (719)
..+|.+|...+..+...
T Consensus 34 E~EI~sL~~K~~~lE~e 50 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEE 50 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 188
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.11 E-value=96 Score=32.08 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc------hhhhcC-------hhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 324 KGLHDGRIKVLQQLYNLQNTLKSV------KCLSSS-------KAFLSVK--NQLEKSKSEVFKYQALFEKLQVEKDNLA 388 (719)
Q Consensus 324 e~l~~e~~~L~~e~~~Lk~~l~~~------~~I~~S-------~~yk~L~--~q~~~lk~eld~~r~~~ekLq~er~~~~ 388 (719)
+++++++.....-++.+|+=+... +.|+.- .-.+.|+ -.+.+++.....++..++.+|.++..++
T Consensus 76 ~kf~eeLrg~VGhiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~ 155 (290)
T COG4026 76 EKFFEELRGMVGHIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELL 155 (290)
T ss_pred HHHHHHHHHhhhhhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777888888888876632 333311 1122332 2345678888888888899999999988
Q ss_pred HHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC
Q 005010 389 WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (719)
Q Consensus 389 ~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~ 444 (719)
....++.. +..+..-+. -..+.+.+.|+..+.++-.++..|+.+|.+.-...+
T Consensus 156 ~eleele~--e~ee~~erl-k~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 156 KELEELEA--EYEEVQERL-KRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 88766542 333443332 224667788888888888888888888888766544
No 189
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.73 E-value=40 Score=28.43 Aligned_cols=61 Identities=13% Similarity=0.273 Sum_probs=47.8
Q ss_pred HHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 005010 416 ADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (719)
Q Consensus 416 ~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~ 476 (719)
.+||..+.+.....--|..++++.+..+.. ..-..+.++-..+|..+|.+|+.+-.-|.+.
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777788888888777774 3556677888889999999999999888877
No 190
>PRK11281 hypothetical protein; Provisional
Probab=66.44 E-value=3.8e+02 Score=34.54 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCCCCCCCCCc----cchhhhhhhHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRV----RDEQRDLRDMESVHKELMDQA 316 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~e~L~~eleE~k~la 316 (719)
+.+...|+.+++++-.++..+.+++++++....... + ....+.+...- ..-...+.+.+..+.++....
T Consensus 79 ~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~----~---~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqL 151 (1113)
T PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET----R---ETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQL 151 (1113)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccc----c---ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999998874211110 0 00000000000 000111233344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----hhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 005010 317 SHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQALF 377 (719)
Q Consensus 317 ~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~----~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ 377 (719)
...-...+..+.........++.++..+.+. +-+. -.....|+.+...++++++-.+.++
T Consensus 152 i~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~-~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 152 VSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALR-PSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666667777777766653 1111 1235567777777777777666664
No 191
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=66.43 E-value=2.6e+02 Score=32.65 Aligned_cols=75 Identities=12% Similarity=0.298 Sum_probs=44.6
Q ss_pred HHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHH-HhcCCCChhH----HHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 005010 401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE-ASREPGRKEI----IAEFRALVSSFPEDMSAMQRQLSKYKE 475 (719)
Q Consensus 401 ~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~-~~~~~~k~~~----~~E~r~Lissl~~~i~~Lk~Ev~R~Ke 475 (719)
.++.+......+..+.+.....+++-...|.+...+.. .......... ..++++=...++++|..|..++.-++.
T Consensus 223 l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~ 302 (511)
T PF09787_consen 223 LELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRA 302 (511)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433334566677776677777788888777766 2221111111 467777777777777777777755553
No 192
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=66.14 E-value=2.1e+02 Score=31.43 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=30.1
Q ss_pred HhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 225 SLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 225 ~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
.++.-+...++.......++..|...|.+++-|..-.|.++++.+..
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 33344444444444456777777777777777777777777777644
No 193
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.36 E-value=69 Score=33.85 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
+.++..+..++++...=..+++..|.++.
T Consensus 5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 5 QKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555555555555554
No 194
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=65.16 E-value=71 Score=33.37 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005010 369 EVFKYQALFEKLQVEKDNLAWRE 391 (719)
Q Consensus 369 eld~~r~~~ekLq~er~~~~~~~ 391 (719)
-+.+|+.+.+.|..||..|...+
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677776665554
No 195
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=64.99 E-value=2.2e+02 Score=31.20 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQL 320 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl 320 (719)
...+..+.+-+..+......+..++..++.-.... + ..+..++..+..++.++..-.+.+.
T Consensus 169 ~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~------~-------------~~D~~eL~~lr~eL~~~~~~i~~~k 229 (325)
T PF08317_consen 169 DKQLEQLDELLPKLRERKAELEEELENLKQLVEEI------E-------------SCDQEELEALRQELAEQKEEIEAKK 229 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------h-------------hcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566665665555321110 0 0112336666666666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTL 344 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l 344 (719)
.+|.+++.++..+..++..+..+.
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555555555443
No 196
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.94 E-value=47 Score=34.09 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHH----hHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 205 LQSEVKNLRLALMDLHLKHKS----LTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~----ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
++.++..|+..+..+...... +..++....+.....+.++++|+.+++.++.+++.++.++++++
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333322 22223333333444566666677777777777766666666665
No 197
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=64.93 E-value=3.3e+02 Score=33.28 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 240 DKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 240 ~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
...++.+|..+|..++.++..++.++..++..
T Consensus 235 ~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~ 266 (754)
T TIGR01005 235 ATQQLAELNTELSRARANRAAAEGTADSVKKA 266 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888777644
No 198
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.67 E-value=69 Score=27.07 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhhh
Q 005010 559 AWAHVHSLKSSLD 571 (719)
Q Consensus 559 ~~ae~~~Lk~~L~ 571 (719)
+.+++..|+.+|+
T Consensus 3 Lea~~~~Lr~rLd 15 (69)
T PF14197_consen 3 LEAEIATLRNRLD 15 (69)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 199
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.65 E-value=1.9e+02 Score=30.47 Aligned_cols=50 Identities=6% Similarity=0.181 Sum_probs=30.3
Q ss_pred hhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 005010 411 TDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (719)
Q Consensus 411 ~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~ 476 (719)
+...+..+...+++.+.+|+.+..+++......+. =+..|+.|+.||+..
T Consensus 161 ~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~----------------a~~~~k~e~~Rf~~~ 210 (243)
T cd07666 161 IQAELDSKVEALANKKADRDLLKEEIEKLEDKVEC----------------ANNALKADWERWKQN 210 (243)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH
Confidence 34556666777777777777666666554333331 144477888888654
No 200
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=64.51 E-value=1.7e+02 Score=29.80 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=43.0
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHHHHH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSS---FPEDMSAMQRQLSKYKEAALDI 480 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Liss---l~~~i~~Lk~Ev~R~Ke~~~e~ 480 (719)
..+|.-++.++-+-..-+..+..++.++.+... ...+.|+.|-+. +..+|..+..++.--|-.+.++
T Consensus 10 nrri~~leeele~aqErl~~a~~KL~Eaeq~~d--E~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~a 79 (205)
T KOG1003|consen 10 NRRIQLLEEELDRAQERLATALQKLEEAEQAAD--ESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKA 79 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888877888888888888777666 555566665432 3445666666654433333333
No 201
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.17 E-value=51 Score=38.80 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHH
Q 005010 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLE 437 (719)
Q Consensus 358 ~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e 437 (719)
.|..+++.|+..+++++..+++|..+.+.+.+.+ .. .-.-.+.+...+.+|..|+..|..-....++|.-+|.
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~-~~------~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESELERFRREV-RD------KVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666654 11 0111222233467888888888888888888888888
Q ss_pred HHh
Q 005010 438 EAS 440 (719)
Q Consensus 438 ~~~ 440 (719)
++.
T Consensus 506 ~l~ 508 (652)
T COG2433 506 ELR 508 (652)
T ss_pred HHH
Confidence 743
No 202
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.77 E-value=3e+02 Score=32.46 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHH
Q 005010 356 FLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMR 435 (719)
Q Consensus 356 yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e 435 (719)
+..+..++..++.....|...++.+-..+..+...+..+ ......+..++..+.+++.++..+-.+
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l--------------~~~~~~le~L~~el~~l~~~l~~~a~~ 368 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQL--------------DDSDESLEALEEEVDKLEEELDKAAVA 368 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH--------------hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666555555555555554444222 112456667777777777777777666
Q ss_pred HHHH
Q 005010 436 LEEA 439 (719)
Q Consensus 436 ~e~~ 439 (719)
+...
T Consensus 369 Ls~~ 372 (563)
T TIGR00634 369 LSLI 372 (563)
T ss_pred HHHH
Confidence 6653
No 203
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=63.68 E-value=2.9e+02 Score=32.11 Aligned_cols=75 Identities=19% Similarity=0.381 Sum_probs=46.9
Q ss_pred hHHHHHHHhHHHHHHHHHHH----HhcCCCC---hhHHHHHHHHHhhcHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhH
Q 005010 419 GIEIQKQIDEKNRIEMRLEE----ASREPGR---KEIIAEFRALVSSFPEDMSAMQRQLSK-YKEAALDIHILRADVLSL 490 (719)
Q Consensus 419 E~~LarvR~ere~L~~e~e~----~~~~~~k---~~~~~E~r~Lissl~~~i~~Lk~Ev~R-~Ke~~~e~~~Lr~e~~~l 490 (719)
+..++.+-..++.|..+|+. ...+.++ .....-|..|+.=+.+.+...+..|.. +++...+...|..++..+
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L 177 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNL 177 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666667766 2223332 244456778888889999888888844 455666667777776665
Q ss_pred HHH
Q 005010 491 TNV 493 (719)
Q Consensus 491 ~~~ 493 (719)
...
T Consensus 178 ~~~ 180 (475)
T PRK10361 178 QQL 180 (475)
T ss_pred HHH
Confidence 443
No 204
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.65 E-value=2.4e+02 Score=31.88 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 005010 596 AEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657 (719)
Q Consensus 596 ~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~ 657 (719)
-++-..+|+.+++..+.....+++++.....+..++..=|-..--+.-++|+.|..|.-...
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777888888888899999988888888899999999988876544
No 205
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=63.00 E-value=2.3e+02 Score=30.88 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=14.4
Q ss_pred HHHhhhhhHHHHHHHHHHHh
Q 005010 521 MVQDLTDSNLELKLILDMYR 540 (719)
Q Consensus 521 ~l~ka~~~~~elkl~ldmy~ 540 (719)
++..+.....+|+.-|.+|.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~ 222 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYS 222 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777788884
No 206
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=62.58 E-value=1.4e+02 Score=28.18 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=10.8
Q ss_pred HHhhcHHHHHHHHHHHHHHHHH
Q 005010 455 LVSSFPEDMSAMQRQLSKYKEA 476 (719)
Q Consensus 455 Lissl~~~i~~Lk~Ev~R~Ke~ 476 (719)
.-.++..+-..|+.++.-++..
T Consensus 92 ~e~sw~~qk~~le~e~~~~~~r 113 (132)
T PF07926_consen 92 SEASWEEQKEQLEKELSELEQR 113 (132)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555444433
No 207
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=62.45 E-value=3.1e+02 Score=32.11 Aligned_cols=166 Identities=12% Similarity=0.069 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCC
Q 005010 207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLG 286 (719)
Q Consensus 207 ~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~ 286 (719)
..+...+..+..|-...+.-+.+++.+.+...+.+.++-.=.+++-++--.+++--.++...-++.+...
T Consensus 118 ~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt---------- 187 (570)
T COG4477 118 EDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELT---------- 187 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc----------
Confidence 3455666677777777777778888888888888888888888777777666664444433323322221
Q ss_pred CCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccc---hhhhcC----hhHHH
Q 005010 287 NKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRI-KVLQQLYNLQNTLKSV---KCLSSS----KAFLS 358 (719)
Q Consensus 287 ~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~-~L~~e~~~Lk~~l~~~---~~I~~S----~~yk~ 358 (719)
+ +|.+.. ..+.-.+.++.......-+.++=.|-.+.+ .+=.++++|+.-.++. .|.-.. ..|..
T Consensus 188 ~----~Gd~ie----A~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~ 259 (570)
T COG4477 188 S----SGDYIE----AREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLER 259 (570)
T ss_pred c----CCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHH
Confidence 0 111211 222333344444444444445444444432 4556777777776643 332222 23444
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 359 VKNQLEKS-----KSEVFKYQALFEKLQVEKDNLAWR 390 (719)
Q Consensus 359 L~~q~~~l-----k~eld~~r~~~ekLq~er~~~~~~ 390 (719)
|+.++... .=++|++...+.-+|...+.+-..
T Consensus 260 L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~ 296 (570)
T COG4477 260 LKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDL 296 (570)
T ss_pred HHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444431 223444455544455555444443
No 208
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.07 E-value=3.9e+02 Score=33.15 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 005010 325 GLHDGRIKVLQQLYNLQNTLKSV 347 (719)
Q Consensus 325 ~l~~e~~~L~~e~~~Lk~~l~~~ 347 (719)
........+.+++..+++.+.+.
T Consensus 330 ~~~~~~~~~~~e~~~~~~~l~~~ 352 (980)
T KOG0980|consen 330 PRELQIEQLSREVAQLKAQLENL 352 (980)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhH
Confidence 33344455566666666655544
No 209
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.30 E-value=1.3e+02 Score=29.57 Aligned_cols=93 Identities=27% Similarity=0.305 Sum_probs=62.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcc
Q 005010 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFF 280 (719)
Q Consensus 201 ~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~ 280 (719)
....+..++..|+.++..|....+.+..++..+....+. .+|...++.+..++.....||..++.. +.+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~-----~~~- 141 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSG-----SKP- 141 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCC-
Confidence 445567788888888888888888888888888665543 346666777777777777777666631 000
Q ss_pred ccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 005010 281 PVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQL 320 (719)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl 320 (719)
....+...+...+..+......|.
T Consensus 142 ----------------vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 142 ----------------VSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 012235667777777777666664
No 210
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=61.04 E-value=2.7e+02 Score=30.90 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=10.6
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHHH
Q 005010 414 KIADLGIEIQKQIDEKNRIEMRLE 437 (719)
Q Consensus 414 ~i~~lE~~LarvR~ere~L~~e~e 437 (719)
++.+++..+...+...+.++..+.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444433
No 211
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=60.76 E-value=4.7e+02 Score=33.62 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=59.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHh---------hhhhhhhhhhhHHHHhhhccCCCchhh-hhhhhHHHHHHHHHHHHHHHH
Q 005010 152 MEEDRETGIPRTKNIVSNILAA---------VDNLWHLKGGLYAAVLKDLQDGGSKQK-ASSNLQSEVKNLRLALMDLHL 221 (719)
Q Consensus 152 ~e~~L~~R~~~tk~~l~~lv~~---------~~~~~~~~~~l~~~l~~~~~~d~~~~~-~~~~L~~E~~~Lq~~~~~L~~ 221 (719)
+=..|..|...+......|-+. |.....+...+...|.+. +++. ....|......|+.++..++.
T Consensus 1172 il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~-----svs~~~i~~l~~~~~~lr~~l~~~~e 1246 (1758)
T KOG0994|consen 1172 ILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAP-----SVSAEDIAQLASATESLRRQLQALTE 1246 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666555555554432 333333444444334322 1111 344455566666666666666
Q ss_pred HhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 222 KHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 222 k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
+.-.....+....+.+.....++.-|..+.+.+..-+...+-++..++
T Consensus 1247 ~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1247 DLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred hhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666655556655555555566666666666655555555555554444
No 212
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.48 E-value=88 Score=35.95 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVK 348 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~ 348 (719)
+..|-..+.+++ .+++.+..+|..|..|++.|+....+++
T Consensus 61 lrTlva~~k~~r-------~~~~~l~~~N~~l~~eN~~L~~r~~~id 100 (472)
T TIGR03752 61 LRTLVAEVKELR-------KRLAKLISENEALKAENERLQKREQSID 100 (472)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 345555555555 4888999999999999999998877763
No 213
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.23 E-value=2.4e+02 Score=30.13 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=34.9
Q ss_pred chhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 347 VKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAW 389 (719)
Q Consensus 347 ~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~ 389 (719)
+++|.+|.-|.-|=+++.-+..-++--+..++....+...+..
T Consensus 120 idvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~ 162 (265)
T COG3883 120 IDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEE 162 (265)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999988888887766666644433
No 214
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=60.09 E-value=4e+02 Score=32.62 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=40.5
Q ss_pred HHHhhHHHHHHHhHHHHHHHHHHH---HhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005010 415 IADLGIEIQKQIDEKNRIEMRLEE---ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT 491 (719)
Q Consensus 415 i~~lE~~LarvR~ere~L~~e~e~---~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~ 491 (719)
++-|..+-+++|...-.|.-.|-+ +...+|-.+.+-| +-||+..|-+|+.+|.- .......|....+.|.
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~E----l~sLqSlN~~Lq~ql~e---s~k~~e~lq~kneell 461 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLE----LFSLQSLNMSLQNQLQE---SLKSQELLQSKNEELL 461 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchh----hHHHHHHHHHHHHHHHH---HHHhHHHHHHhHHHHH
Confidence 345555555666554455444444 3333332344544 34778899999988743 3333444554445555
Q ss_pred HHHHh
Q 005010 492 NVLER 496 (719)
Q Consensus 492 ~~l~~ 496 (719)
.++..
T Consensus 462 k~~e~ 466 (861)
T PF15254_consen 462 KVIEN 466 (861)
T ss_pred HHHHH
Confidence 55533
No 215
>PRK10869 recombination and repair protein; Provisional
Probab=59.04 E-value=3.7e+02 Score=31.83 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETEL 394 (719)
Q Consensus 354 ~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~ 394 (719)
..|+.++..+..++..+++++......+..++-+..++.|+
T Consensus 157 ~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 157 QEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888778888888888887666
No 216
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=57.34 E-value=2.3e+02 Score=29.07 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q 005010 549 VLAARDLEYKAWAHVHSLKSSLDEQSL----------ELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLS 618 (719)
Q Consensus 549 ~~~~~~~E~~~~ae~~~Lk~~L~e~~~----------~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~ 618 (719)
++..++.++.+..+++.+...+.+... +...+.+-+....++..+..++.++..++..++..+..+..|+
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~ 126 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQ 126 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666777777777776654322 1111222222234555666666677777777777766666666
Q ss_pred HHhhhhHHHHHHHHHHH
Q 005010 619 DALKSKNEEIEAYLSEI 635 (719)
Q Consensus 619 ~~l~~~~~e~~al~~Ei 635 (719)
..+...+.-...|+.-.
T Consensus 127 ~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 127 AKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66665555555554444
No 217
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=56.59 E-value=74 Score=25.85 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAAL 268 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~l 268 (719)
..++.-|...+..++.|-..++.||+..
T Consensus 23 s~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 23 SSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444445555566666666666666543
No 218
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=56.06 E-value=2.2e+02 Score=28.85 Aligned_cols=57 Identities=23% Similarity=0.372 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005010 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQ 650 (719)
Q Consensus 594 ~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~ 650 (719)
...+.+|.+|..++-..++....+...-.+...+...+-++++.|.++.+++--+-+
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777777777766777778888888888888888887765443
No 219
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.53 E-value=3.4e+02 Score=30.36 Aligned_cols=56 Identities=9% Similarity=0.228 Sum_probs=42.4
Q ss_pred hHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHH
Q 005010 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQR 468 (719)
Q Consensus 413 ~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~ 468 (719)
..|..+-..|++|-.+.+....++++.-....-+.-.-.+|..+..|.++|.+|.-
T Consensus 294 ~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdv 349 (359)
T PF10498_consen 294 EGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDV 349 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 45666777888888888998888888555444445566788888888888888863
No 220
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.06 E-value=92 Score=27.02 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=43.4
Q ss_pred HHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 005010 415 IADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (719)
Q Consensus 415 i~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~ 476 (719)
+.+||..+++....-.-|+.++++.+..+.. ..-+..+++=-+.|..+|.+|+.|-.-|.+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777778888887777763 2333444444455888899999888888877
No 221
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=55.01 E-value=87 Score=30.91 Aligned_cols=77 Identities=23% Similarity=0.258 Sum_probs=50.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhh-----h----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005010 591 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKS-----K----------NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQ 655 (719)
Q Consensus 591 ~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~-----~----------~~e~~al~~Eie~~gqA~edmq~Qn~~ll~q 655 (719)
..|...|+||..||+-|.+.++...+|+..|-. . =+..++|. =..|+.||-.+-.--.+++.+
T Consensus 36 ~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~--gqKTsaa~s~~g~~i~~Kl~d 113 (162)
T PF04201_consen 36 SELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYK--GQKTSAAFSSVGSAISRKLGD 113 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888888888888875421 1 13445555 456667777777777777777
Q ss_pred hhhhhhhhhHHHHHhH
Q 005010 656 ITERDDYNIKLVLEGV 671 (719)
Q Consensus 656 l~e~dd~n~kl~~E~~ 671 (719)
++.- .-||-+.|++
T Consensus 114 mrnS--~tFKSfEeKV 127 (162)
T PF04201_consen 114 MRNS--PTFKSFEEKV 127 (162)
T ss_pred Hhcc--hHHHhHHHHh
Confidence 5433 3455555554
No 222
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=52.97 E-value=4.7e+02 Score=31.29 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 005010 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (719)
Q Consensus 447 ~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~ 476 (719)
..+..+..++.+-..++..|.++-..+|..
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~p 423 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAP 423 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456899999999999999999998888765
No 223
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.77 E-value=3.4e+02 Score=31.10 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc---hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKSV---KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMK 397 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~~---~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k 397 (719)
.+|+-.++....+..+...|+.+..|. ..|. ..--+.++..+..+..++...+++-..|....+.+..+++++.
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~-e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~-- 423 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIV-ERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE-- 423 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--
Confidence 355666666667777777777776665 2222 2344567777777777777777777777777777777765553
Q ss_pred hchHHHHhhhhhhhhhHHHHhhHHHHHHH
Q 005010 398 IDLVDVFRRSSAVTDSKIADLGIEIQKQI 426 (719)
Q Consensus 398 ~E~~e~~~~~~~~~~~~i~~lE~~LarvR 426 (719)
|....+. ...+..|.+|+.+|.-|+
T Consensus 424 -e~~~~~~---~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 424 -EREKEAL---GSKDEKITDLQEQLRDLM 448 (493)
T ss_pred -HHHHHHH---HHHHHHHHHHHHHHHhHh
Confidence 2222222 223566666666655543
No 224
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.76 E-value=5.2e+02 Score=31.73 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 005010 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERD 660 (719)
Q Consensus 594 ~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~d 660 (719)
.++...+..|-.+|...+-++...+..+..-....+.-++||+-+-+-.-+.|+-|.+|+..-.+..
T Consensus 447 etLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~ 513 (1118)
T KOG1029|consen 447 ETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELN 513 (1118)
T ss_pred HHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3333344444444444444444445555555666677788888777777766666666665544433
No 225
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=52.16 E-value=1.1e+02 Score=25.33 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhcCh
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSK 354 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~ 354 (719)
.|+.+|..+...+..++..+...|.|+.|+..-|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP 37 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAP 37 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCC
Confidence 5788999999999999999999999988777554
No 226
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=51.95 E-value=2.1e+02 Score=27.88 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHH
Q 005010 366 SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (719)
Q Consensus 366 lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~ 439 (719)
|...++..+.-...|-.+...++.+ .|+ |..+++ .++......|+++..|||+|+-++=++
T Consensus 90 Lqd~~~~hksa~~aLas~L~~Lr~q-~e~----e~keaa--------~qL~~~~a~L~~v~~ERD~Lr~kLlqa 150 (152)
T PF15186_consen 90 LQDQAEEHKSAAWALASELKRLREQ-REM----ERKEAA--------FQLQLTQAALQEVQKERDLLRWKLLQA 150 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6667777777777777777777777 466 555553 677778899999999999999887553
No 227
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=51.23 E-value=1.7e+02 Score=25.51 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=42.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 005010 591 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERD 660 (719)
Q Consensus 591 ~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~d 660 (719)
.||..+-..|.-|+..++.. ++....|..|++.+...-+.+..+|.+|=++-.-=.
T Consensus 11 ~KIqqAvdtI~LLqmEieEL--------------Kekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEEL--------------KEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46777777899999998887 667777778888877777888888877766554433
No 228
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.11 E-value=6.3e+02 Score=31.91 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=44.7
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHI 482 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~ 482 (719)
...+..+...+..+....+++.+++-...-..- ..+-..-+++|..+|..|..++..+.....++..
T Consensus 747 ~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqL----t~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~ 813 (1200)
T KOG0964|consen 747 GKELEEIKTSLHKLESQSNYFESELGSELFSQL----TPEELERLSKLNKEINKLSVKLRALREERIDIET 813 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhc----CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777766321111 1244556788899999999999888766544444
No 229
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=49.89 E-value=1e+02 Score=25.54 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 005010 211 NLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEEC 261 (719)
Q Consensus 211 ~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~ 261 (719)
.++..++.++.-+..+..+++.. +.++.+|..+++.+..+++.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqea-------E~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEA-------EKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666 444444555555544444443
No 230
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.64 E-value=2.9e+02 Score=27.89 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=41.2
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKE-AALDIHILRADVLSL 490 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke-~~~e~~~Lr~e~~~l 490 (719)
...+..+...+..++.....|..+++.+....+...--..+-.-+..|..++..|+.++..|.. .-..+..++.++..+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455666666666666666666666665433332222222333344555666666666655542 112334444444333
Q ss_pred HHHH
Q 005010 491 TNVL 494 (719)
Q Consensus 491 ~~~l 494 (719)
....
T Consensus 148 ~~~a 151 (188)
T PF03962_consen 148 KEAA 151 (188)
T ss_pred HHHH
Confidence 3333
No 231
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=49.31 E-value=3.3e+02 Score=28.46 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhh
Q 005010 630 AYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANAS 697 (719)
Q Consensus 630 al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~ 697 (719)
-|..||+-+-+.+..--++-+.-=++|-..++-.-.+-+|+-+.......+++|..-|.+++..+...
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777766666666666666777777787777788888888888888888887777777766555
No 232
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=49.19 E-value=4.4e+02 Score=29.77 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHH
Q 005010 512 VAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQ 591 (719)
Q Consensus 512 ~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~ 591 (719)
...|..|+.++..++....+| ..-| ..+++++.. ++++++.++..|...-.. + .. ....
T Consensus 253 ~~~i~~l~~~l~~le~~l~~l---~~~y---~~~hP~v~~-------l~~~i~~l~~~l~~e~~~--~--~~----~~~~ 311 (444)
T TIGR03017 253 NPIIQNLKTDIARAESKLAEL---SQRL---GPNHPQYKR-------AQAEINSLKSQLNAEIKK--V--TS----SVGT 311 (444)
T ss_pred ChHHHHHHHHHHHHHHHHHHH---HHHh---CCCCcHHHH-------HHHHHHHHHHHHHHHHHH--H--HH----HHHH
Confidence 356778888888887755554 3345 558888877 777888888877532110 0 00 1111
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005010 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQN 649 (719)
Q Consensus 592 kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn 649 (719)
.+..+...+..|+..++..+..+..+.. ...+-..|-.|.+..-.-|+.+-.+-
T Consensus 312 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~----~~~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 312 NSRILKQREAELREALENQKAKVLELNR----QRDEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233334444444444444333332222 23444555566666666665555443
No 233
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=47.97 E-value=2.5e+02 Score=26.59 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=53.1
Q ss_pred ChhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHH
Q 005010 353 SKAFLSVKNQLEKSKSEV---------FKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQ 423 (719)
Q Consensus 353 S~~yk~L~~q~~~lk~el---------d~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~La 423 (719)
-++|+.|-..|..|-... +......+.+..+...+.-.+.... =..++..+....+.....+++..+.
T Consensus 15 dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q---~~~~~n~~e~e~Y~~~~~~i~~~i~ 91 (139)
T PF05615_consen 15 DRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQ---LILEMNKRERENYEQLNEEIEQEIE 91 (139)
T ss_pred chhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666655565544433 3444445555555555544432211 0222222333334555566666666
Q ss_pred HHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcH
Q 005010 424 KQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFP 460 (719)
Q Consensus 424 rvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~ 460 (719)
.++.+-+.|+.++..+..--..+.-.+.+-..|++.+
T Consensus 92 ~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~~p 128 (139)
T PF05615_consen 92 QAKKEIEELKEELEEAKRVRQNKEEYDALAKKINSQP 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6666666666666665554444444555555555544
No 234
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.86 E-value=6.1e+02 Score=31.10 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=13.3
Q ss_pred hHHHHhhHHHHHHHhHHHHHHHHHH
Q 005010 413 SKIADLGIEIQKQIDEKNRIEMRLE 437 (719)
Q Consensus 413 ~~i~~lE~~LarvR~ere~L~~e~e 437 (719)
.++..+...+.+++...+..+..++
T Consensus 646 ~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 646 DQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555544444
No 235
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.41 E-value=72 Score=24.66 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA 388 (719)
Q Consensus 355 ~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~ 388 (719)
.|-.|+..+..|++.++.+..+.+.|+++...+.
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666665554443
No 236
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=45.95 E-value=2.5e+02 Score=31.11 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHH
Q 005010 328 DGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (719)
Q Consensus 328 ~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~ 376 (719)
..+..+....+.|...|.+++++.....|+.|..++..|...+..|+.-
T Consensus 7 ~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~ 55 (363)
T COG0216 7 EKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREY 55 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788888999999999999999999998887777776655
No 237
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.86 E-value=2.4e+02 Score=25.80 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=28.7
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005010 234 QDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERD 273 (719)
Q Consensus 234 ~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~ 273 (719)
.+.+-..++.+..+..++|.+.+.-..+.+|+..|..+-.
T Consensus 32 ~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 32 KEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334778888888888888888888888887776544
No 238
>PRK11519 tyrosine kinase; Provisional
Probab=45.22 E-value=6.6e+02 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=27.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 237 DAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 237 ~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
....+.-+.-|..++..+..+|..++.++...+.+
T Consensus 262 ~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 262 SEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666778999999999999999999888755
No 239
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.17 E-value=3.8e+02 Score=27.99 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQV 382 (719)
Q Consensus 303 e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~ 382 (719)
..+..........+..--...+++..+...+..++..| ..+...++..++++...+..++.
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l-------------------~~e~e~L~~~~~~l~~~v~~q~~ 84 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQL-------------------EREIENLEVYNEQLERQVASQEQ 84 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555544444 44444444444444444444444
Q ss_pred HHHHHHHHH
Q 005010 383 EKDNLAWRE 391 (719)
Q Consensus 383 er~~~~~~~ 391 (719)
+...+..++
T Consensus 85 el~~L~~qi 93 (251)
T PF11932_consen 85 ELASLEQQI 93 (251)
T ss_pred HHHHHHHHH
Confidence 444444443
No 240
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=45.06 E-value=4.6e+02 Score=28.91 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHH
Q 005010 449 IAEFRALVSSFPEDMSAMQRQLSKY 473 (719)
Q Consensus 449 ~~E~r~Lissl~~~i~~Lk~Ev~R~ 473 (719)
...|..++.-+.++|..|+.++.-|
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4566667777777777777777544
No 241
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=44.87 E-value=3.6e+02 Score=28.99 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHH
Q 005010 240 DKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQ 319 (719)
Q Consensus 240 ~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~R 319 (719)
.++||.+|+.||.-++.++..-++.=..++ +
T Consensus 87 RetEI~eLksQL~RMrEDWIEEECHRVEAQ---------------------------------------L---------- 117 (305)
T PF15290_consen 87 RETEIDELKSQLARMREDWIEEECHRVEAQ---------------------------------------L---------- 117 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------H----------
Confidence 488999999999988888877665321111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHH
Q 005010 320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQAL 376 (719)
Q Consensus 320 l~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~ 376 (719)
-|.+++.|++.|.+=++.++..|.+-| +-++.+|.+.+.++..+-.+
T Consensus 118 --ALKEARkEIkQLkQvieTmrssL~ekD--------kGiQKYFvDINiQN~KLEsL 164 (305)
T PF15290_consen 118 --ALKEARKEIKQLKQVIETMRSSLAEKD--------KGIQKYFVDINIQNKKLESL 164 (305)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhhchhh--------hhHHHHHhhhhhhHhHHHHH
Confidence 255677788888999999999887643 45556666666666555555
No 242
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=44.59 E-value=3.4e+02 Score=29.05 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHH
Q 005010 550 LAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIE 629 (719)
Q Consensus 550 ~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~ 629 (719)
+++...|+-+++-+.....+++...-.+--.+- .|+..-.||.....|++.+|+.+++. ..=--
T Consensus 101 lel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvas--dea~L~~Kierrk~ElEr~rkRle~L--------------qsiRP 164 (338)
T KOG3647|consen 101 LELLEVEKVLKSAIQAIQVRLQSSRAQLNNVAS--DEAALGSKIERRKAELERTRKRLEAL--------------QSIRP 164 (338)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hhcch
Confidence 456678888888888888887765433222222 24466678888888888888888887 44556
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 005010 630 AYLSEIETIGQSYDDMQTQNQQLLQQITER 659 (719)
Q Consensus 630 al~~Eie~~gqA~edmq~Qn~~ll~ql~e~ 659 (719)
+|+.|.|.+- |.+|.+-.+.+-.++..
T Consensus 165 ~~MdEyE~~E---eeLqkly~~Y~l~f~nl 191 (338)
T KOG3647|consen 165 AHMDEYEDCE---EELQKLYQRYFLRFHNL 191 (338)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHhhH
Confidence 8999988764 67788877777666554
No 243
>PRK10722 hypothetical protein; Provisional
Probab=44.59 E-value=1.8e+02 Score=30.54 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhH---HhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcc
Q 005010 207 SEVKNLRLALMDLHLKHK---SLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR-AERDVT 275 (719)
Q Consensus 207 ~E~~~Lq~~~~~L~~k~k---~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk-~e~~~~ 275 (719)
..-..||..+.......- .++.|-.+++-......+++..|..+.-+++.+|....+||..|. .|++-+
T Consensus 138 ~~p~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLS 210 (247)
T PRK10722 138 QIPAQVRPLYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQLS 210 (247)
T ss_pred ccchhhhHHHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677766665533 566666766666666789999999999999999999999999997 455543
No 244
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=44.50 E-value=2.3e+02 Score=25.49 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005010 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN 395 (719)
Q Consensus 361 ~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~ 395 (719)
+++-.+-.+.-.+...++.|+++++.+..++....
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 34444444555556666667888888888875553
No 245
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=44.33 E-value=4.5e+02 Score=28.56 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 307 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDN 386 (719)
Q Consensus 307 ~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~ 386 (719)
-+.+|.--+=.+--.++-.++..|..|.++++....+ |..|..++.+.+..+-+---.++.+|.+..+
T Consensus 123 r~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK------------~nsLe~elh~trdaLrEKtL~lE~~QrdL~Q 190 (305)
T PF14915_consen 123 RARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESK------------FNSLEIELHHTRDALREKTLALESVQRDLSQ 190 (305)
T ss_pred HHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566777777888888888877766 4577888888888888888788888998888
Q ss_pred HHHHHHHHh--hhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHH
Q 005010 387 LAWRETELN--MKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA 439 (719)
Q Consensus 387 ~~~~~~E~~--~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~ 439 (719)
-.-+++|+. -.+|-+-+ -.+-..-..++..|+++-++---|+-.++.+
T Consensus 191 tq~q~KE~e~m~qne~~kv-----~k~~~Kqes~eERL~QlqsEN~LLrQQLddA 240 (305)
T PF14915_consen 191 TQCQIKEIEHMYQNEQDKV-----NKYIGKQESLEERLSQLQSENMLLRQQLDDA 240 (305)
T ss_pred HHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877776662 11221111 1112333566777777777766666666663
No 246
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=43.79 E-value=3e+02 Score=26.32 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=27.5
Q ss_pred HHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 227 TRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 227 s~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
..+++.++..+...++-++.|+.++..-..++...+.+|+.+.
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666667777777777777777776666554
No 247
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=43.59 E-value=5.7e+02 Score=29.55 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=34.1
Q ss_pred hhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHH
Q 005010 661 DYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKA 705 (719)
Q Consensus 661 d~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~ 705 (719)
++-.++-+=+|+++++.-.+++++..+-.++-++-.-+-..+..|
T Consensus 555 ~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~I 599 (622)
T COG5185 555 DAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKINI 599 (622)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 455567778999999999999999999999987655444444333
No 248
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=43.50 E-value=7.5e+02 Score=30.87 Aligned_cols=28 Identities=7% Similarity=0.187 Sum_probs=19.7
Q ss_pred hhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 411 TDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 411 ~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
.+.+...+...++.+|.+..+|..++.+
T Consensus 422 ~e~ry~klkek~t~l~~~h~~lL~K~~d 449 (980)
T KOG0980|consen 422 AENRYEKLKEKYTELRQEHADLLRKYDD 449 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777766
No 249
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.89 E-value=4.3e+02 Score=27.93 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=14.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 237 DAKDKAKLNRLKGELESAVKELEECNCK 264 (719)
Q Consensus 237 ~~~~~~e~~~L~~eLe~~~~elek~~rk 264 (719)
+....+++.+.+.-++.+..||..+..-
T Consensus 8 l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 8 LSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333555555555555555566665543
No 250
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.78 E-value=1.5e+02 Score=30.77 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=20.0
Q ss_pred HHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 227 TRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (719)
Q Consensus 227 s~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~l 268 (719)
..++...++.+...+.++.+|...+..+--++.+.++|++.|
T Consensus 162 e~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 162 EAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 333333444444445555555555555555555555555444
No 251
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.96 E-value=7.3e+02 Score=30.32 Aligned_cols=112 Identities=7% Similarity=0.054 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC
Q 005010 365 KSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (719)
Q Consensus 365 ~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~ 444 (719)
.+..++..++..++..+.....|+.+- ... +...-+. . .-.++.+++.+++.++.....|...+ .+
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~fr~~~-~~~---d~~~ea~-~---~l~~~~~l~~ql~~l~~~~~~l~~~~------~~ 336 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVYRQQR-DSV---DLNLEAK-A---VLEQIVNVDNQLNELTFREAEISQLY------KK 336 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC---CCCHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHh------cc
Confidence 366666666666666666666666652 221 1000011 1 12455666666666665555544332 22
Q ss_pred ChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005010 445 RKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490 (719)
Q Consensus 445 k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l 490 (719)
+-|.+..++.-+.+++.++..+++++..+-....++..|..+++-.
T Consensus 337 ~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~ 382 (726)
T PRK09841 337 DHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAG 382 (726)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3588888888888888888888888877766666677776666543
No 252
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=41.00 E-value=2.4e+02 Score=29.21 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhH
Q 005010 597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIK 665 (719)
Q Consensus 597 e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~k 665 (719)
-.+...++..+.... .+.+..+..+++-+.|-.|++..+..++..|+++--|..|.-+..+--.+
T Consensus 133 ~~~~~~lk~~~~~~~----~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 133 MKENEALKKQLENSS----KLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred HHHHHHHHHhhhccc----chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 335666666666542 27788888899999999999999999999999999999888776654333
No 253
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=40.64 E-value=2.9e+02 Score=25.20 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=35.5
Q ss_pred HHHHhHHHHHHHH--HHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005010 591 QRLAAAEAEIADM--RQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQ 655 (719)
Q Consensus 591 ~kl~~~e~ei~~L--r~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~q 655 (719)
+|+...|.+++.| +..+... +-+...+-.+|.+++..+..+..|..-|+.+
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L--------------~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDL--------------QLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666 5555555 4466667777888888888888887777754
No 254
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.59 E-value=5.4e+02 Score=28.41 Aligned_cols=118 Identities=13% Similarity=0.220 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 317 SHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNM 396 (719)
Q Consensus 317 ~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~ 396 (719)
..|-.|-++|+-.+++|..++-..+. .|-..+...++|++.+-+.+++..-||...+++.+...|..
T Consensus 95 ~e~q~e~~qL~~qnqkL~nqL~~~~~------------vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke- 161 (401)
T PF06785_consen 95 EERQQESEQLQSQNQKLKNQLFHVRE------------VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKE- 161 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH------------HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH-
Confidence 34455666666666666555554432 34456666677777777777777777777777776665552
Q ss_pred hhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005010 397 KIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK 472 (719)
Q Consensus 397 k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R 472 (719)
| +.+.|-.+|+.-+.=.-.|..+.. ...-|=+.++..+|.-|+.|++-|+.
T Consensus 162 --e--------------esq~LnrELaE~layqq~L~~eyQ---------atf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 162 --E--------------ESQTLNRELAEALAYQQELNDEYQ---------ATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred --H--------------HHHHHHHHHHHHHHHHHHHHHHhh---------cccccchhhhHHHHHHHHHHHHHHHH
Confidence 1 111221122211111112222221 23334456888888888888887755
No 255
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=39.78 E-value=6.9e+02 Score=29.40 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=34.4
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 352 SSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (719)
Q Consensus 352 ~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~ 391 (719)
.+.+|+.|++-+..+.+.+......-++++...++++.-.
T Consensus 373 ~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdE 412 (570)
T COG4477 373 QEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDE 412 (570)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999888888888877764
No 256
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.50 E-value=8.2e+02 Score=30.17 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhhcChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAF-LSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAW 389 (719)
Q Consensus 312 ~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~-~~I~~S~~y-k~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~ 389 (719)
+++-...+-.||+.|+..++.|...+.+...++.+. ..|-+..-| -..-....++.+.+.+++..+.+|--|+..+-.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344455667889999999999999999988888766 344433333 344566667777777777777777777766655
Q ss_pred HH
Q 005010 390 RE 391 (719)
Q Consensus 390 ~~ 391 (719)
++
T Consensus 515 ql 516 (1118)
T KOG1029|consen 515 QL 516 (1118)
T ss_pred HH
Confidence 54
No 257
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.80 E-value=5.6e+02 Score=28.05 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=22.7
Q ss_pred HhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 005010 503 TLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRR 541 (719)
Q Consensus 503 ~l~~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~ 541 (719)
.+..++..-...|+..+.++..+...+.++.-+++-.++
T Consensus 229 e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~ 267 (312)
T smart00787 229 ELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRG 267 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333334444556666666666666666666666665544
No 258
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.74 E-value=2.4e+02 Score=23.70 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 005010 247 LKGELESAVKELE 259 (719)
Q Consensus 247 L~~eLe~~~~ele 259 (719)
|....+.+...++
T Consensus 40 L~ekne~Ar~rvE 52 (65)
T TIGR02449 40 LLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 259
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.72 E-value=4.9e+02 Score=27.34 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (719)
Q Consensus 358 ~L~~q~~~lk~eld~~r~~~ekLq~er~~~ 387 (719)
|++..+..++..+...+...+.|+...+.+
T Consensus 17 C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 17 CVNNRLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 260
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=38.59 E-value=2.4e+02 Score=26.75 Aligned_cols=18 Identities=6% Similarity=0.333 Sum_probs=8.7
Q ss_pred HHHHHHHHhhcHHHHHHH
Q 005010 449 IAEFRALVSSFPEDMSAM 466 (719)
Q Consensus 449 ~~E~r~Lissl~~~i~~L 466 (719)
+..+++++..|...|..+
T Consensus 105 v~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 105 VDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555554444
No 261
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=37.57 E-value=4.9e+02 Score=27.01 Aligned_cols=129 Identities=15% Similarity=0.201 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCCCCCCCCC----ccchhhhhhhHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDR----VRDEQRDLRDMESVHKELMDQA 316 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~e~L~~eleE~k~la 316 (719)
..+...+...++++-.++..+++.|..++.. ...+. +.. .+.+... .......+.++...+.......
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~--~~~~~--~~~----~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l 108 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQ--DAPSK--EIL----ANLSLEELEQRLSQEQAQLQELQEQLQQENSQL 108 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc--ccccc--cCc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999888754 11111 110 0111000 0111112344444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----hhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 005010 317 SHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQALF 377 (719)
Q Consensus 317 ~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~----~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ 377 (719)
...-.-.+.++.......+.++.+...|.++ +...+...+..|+.+...+..+++.++.++
T Consensus 109 ~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el 173 (240)
T PF12795_consen 109 IEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQEL 173 (240)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555667777777777777777777754 122223455566666666777766666654
No 262
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.40 E-value=2.6e+02 Score=25.42 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHhh--hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 207 SEVKNLRLALMDLHLKHKSLTRELQSR--QDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 207 ~E~~~Lq~~~~~L~~k~k~ls~e~~~l--~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
.++..|...++....+-..+..+++++ ++.+...+-++.+++|++..+...+.-..+.++.|-
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555 566666688888888888888888888877766553
No 263
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.15 E-value=2.3e+02 Score=30.06 Aligned_cols=29 Identities=10% Similarity=0.320 Sum_probs=23.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 237 DAKDKAKLNRLKGELESAVKELEECNCKL 265 (719)
Q Consensus 237 ~~~~~~e~~~L~~eLe~~~~elek~~rkL 265 (719)
+...+.+|.+|.|++|..++++..+.++-
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33339999999999999999999987743
No 264
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.09 E-value=4.5e+02 Score=26.49 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=23.6
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 005010 418 LGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477 (719)
Q Consensus 418 lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~ 477 (719)
+-..+..++.+...|..+++.. ...=+..+..|+.++..+++++
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~----------------~~~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKY----------------SENDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HhcCHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555532 2233456666666666666653
No 265
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=37.05 E-value=8.6e+02 Score=29.72 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=28.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 236 IDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 236 ~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
+......-+.-|..+|..+..+|..++.++...+.+
T Consensus 261 k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 261 QAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667779999999999999999999888865
No 266
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.05 E-value=9e+02 Score=29.95 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=67.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhH
Q 005010 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGV 671 (719)
Q Consensus 592 kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ 671 (719)
.+..+..++..++.+|..++..+.+|+..|...+....++..+|+..-.-|+++..+..-+--.+.+.-...-.|-.|--
T Consensus 611 ~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 611 ELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777778888888888899999999999999889988888866554444443334444444444
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHH
Q 005010 672 RARQLQDALLMDKHMMESEIQQAN 695 (719)
Q Consensus 672 ka~q~~~~l~~ek~~l~~~~~~~~ 695 (719)
+-++.+.-+......|+.++....
T Consensus 691 ~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 691 KERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHHhcchhhhhHHHHHHHHHHhhh
Confidence 444444444444445555444433
No 267
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.91 E-value=4.5e+02 Score=26.43 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNT 343 (719)
Q Consensus 313 k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~ 343 (719)
..+.+.--.+|+.++..|..|..++.+|..+
T Consensus 80 ~qvN~lLReQLEq~~~~N~~L~~dl~klt~~ 110 (182)
T PF15035_consen 80 AQVNALLREQLEQARKANEALQEDLQKLTQD 110 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555555555554443
No 268
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=36.85 E-value=1.4e+02 Score=30.11 Aligned_cols=54 Identities=33% Similarity=0.468 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHH-HHHHHhHHHHHHHH
Q 005010 590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI-ETIGQSYDDMQTQN 649 (719)
Q Consensus 590 ~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Ei-e~~gqA~edmq~Qn 649 (719)
.+.|...|+||-.||+-|.+.+|-..+|+..|--. .+.|+ ..|++.|-|+|.-+
T Consensus 50 r~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt------~~~EL~qnisksw~d~q~st 104 (208)
T KOG4010|consen 50 RTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLT------VLKELKQNISKSWKDVQAST 104 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------hHHHHHHHHHHHHhhhhhHH
Confidence 35678899999999999999999999998865432 23333 45777777776644
No 269
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.79 E-value=2.3e+02 Score=25.01 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQL 320 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl 320 (719)
-.+|..++..+-....+|+.+++||- +. . .+ + ..=..++.++.+++..+..=-
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~----------~~---e-------Ls-----~--e~R~~lE~E~~~l~~~l~~~E 56 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLR----------RR---E-------LS-----P--EARRSLEKELNELKEKLENNE 56 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHc----------cc---C-------CC-----h--HHHHHHHHHHHHHHHHhhccH
Confidence 34666677777777777777777661 00 0 01 1 113677888999999999888
Q ss_pred HHHHHHHHHHHH
Q 005010 321 LELKGLHDGRIK 332 (719)
Q Consensus 321 ~ELe~l~~e~~~ 332 (719)
.+|..|+.+|..
T Consensus 57 ~eL~~LrkENrK 68 (85)
T PF15188_consen 57 KELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHhhhh
Confidence 999999988865
No 270
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.77 E-value=2e+02 Score=33.26 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 005010 241 KAKLNRLKGEL 251 (719)
Q Consensus 241 ~~e~~~L~~eL 251 (719)
+++++.|+.++
T Consensus 110 EaE~~~Lk~Ql 120 (475)
T PRK13729 110 GQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 271
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.62 E-value=2.7e+02 Score=23.75 Aligned_cols=61 Identities=15% Similarity=0.364 Sum_probs=30.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005010 591 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQ 651 (719)
Q Consensus 591 ~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ 651 (719)
.+|+..++.|+.|+..-...-.....+...++........+=..|..++...++....-..
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666655555544444444444444444444444455554444444443333
No 272
>PLN02939 transferase, transferring glycosyl groups
Probab=36.45 E-value=1e+03 Score=30.34 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=30.3
Q ss_pred hHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC--hhHHHHHHHH---HhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPGR--KEIIAEFRAL---VSSFPEDMSAMQRQLSKYKEAALDIHILRA 485 (719)
Q Consensus 413 ~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k--~~~~~E~r~L---issl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~ 485 (719)
..+.=+|..|-++|+ ++-+.....|- -+...|+-.| .-+|.+.|..|+.++.-.+++-..+..|.+
T Consensus 194 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (977)
T PLN02939 194 IHVEILEEQLEKLRN-------ELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEK 264 (977)
T ss_pred ccchhhHHHHHHHhh-------hhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344555555555544 44443343331 2444444332 224555555555555555444444444433
No 273
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.74 E-value=9.1e+02 Score=29.63 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=22.9
Q ss_pred HHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 227 TRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 227 s~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
..++..+++.....+..-..|.+.++++...-+.+.+|++++.
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl 620 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555666666666666666665543
No 274
>PRK10869 recombination and repair protein; Provisional
Probab=34.07 E-value=8.5e+02 Score=28.78 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=16.8
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
+..+..|+..+.++..++..+..++..
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655
No 275
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.97 E-value=1.2e+02 Score=35.02 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=24.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHH
Q 005010 589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI 635 (719)
Q Consensus 589 ~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Ei 635 (719)
.|.+...+|.+++.|++.++...+....++..|+..+.+...|...|
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666665444444444555554444444444444
No 276
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.89 E-value=2.7e+02 Score=23.00 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHH
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESA 254 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~ 254 (719)
+..|+.+.+..+-.+..+.+........+ ..+|..|..+++++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL-------~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNREL-------EQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 33444444444444444444444444444 44444444444443
No 277
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.58 E-value=1.7e+02 Score=22.64 Aligned_cols=9 Identities=33% Similarity=0.578 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 005010 241 KAKLNRLKG 249 (719)
Q Consensus 241 ~~e~~~L~~ 249 (719)
.+++..|++
T Consensus 32 ~aev~~L~~ 40 (45)
T PF02183_consen 32 RAEVQELKE 40 (45)
T ss_pred HHHHHHHHH
Confidence 444444443
No 278
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.33 E-value=2.5e+02 Score=32.77 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 307 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQ 341 (719)
Q Consensus 307 ~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk 341 (719)
..+.++......-..++.++.++...|..++..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444455555555555554443
No 279
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.53 E-value=1.1e+02 Score=32.01 Aligned_cols=29 Identities=21% Similarity=0.076 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhh
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSR 233 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l 233 (719)
|..|+..|+..++.|+++++.|..+-..+
T Consensus 102 L~een~~L~~en~~Lr~~n~~L~~~n~el 130 (292)
T KOG4005|consen 102 LTEENEILQNENDSLRAINESLLAKNHEL 130 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66677777777777777777766665555
No 280
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=32.12 E-value=5.4e+02 Score=25.87 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 005010 588 ISQQRLAAAEAEIADMRQKLEAF 610 (719)
Q Consensus 588 ~~~~kl~~~e~ei~~Lr~~l~~~ 610 (719)
.-+.+|+.++.|...||..|.-+
T Consensus 157 ~~qe~i~qL~~EN~~LRelL~Is 179 (181)
T PF05769_consen 157 EEQEIIAQLETENKGLRELLQIS 179 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667777777887777777654
No 281
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=31.95 E-value=4.2e+02 Score=27.48 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhhh
Q 005010 558 KAWAHVHSLKSSLDE 572 (719)
Q Consensus 558 ~~~ae~~~Lk~~L~e 572 (719)
++..+++.++..+..
T Consensus 131 ~~~~~~~~lk~~~~~ 145 (216)
T KOG1962|consen 131 KAMKENEALKKQLEN 145 (216)
T ss_pred HHHHHHHHHHHhhhc
Confidence 355566666666654
No 282
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=31.81 E-value=4.6e+02 Score=25.01 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 005010 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVT 275 (719)
Q Consensus 206 ~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~ 275 (719)
..|+-+|...--+|.-.-...+=.+.+...+. ..+++..+|..+++.+..++....+.++.++....++
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~-eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKH-ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666555555444444444444443332 2367777888888888888888888888887654433
No 283
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=31.79 E-value=8.2e+02 Score=27.92 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=9.3
Q ss_pred HhhHHHHHHHhHHHHHHHHHHH
Q 005010 417 DLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 417 ~lE~~LarvR~ere~L~~e~e~ 438 (719)
....+|..++.+.+.++..+..
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 284
>PLN02678 seryl-tRNA synthetase
Probab=31.42 E-value=6.6e+02 Score=28.97 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHhh---hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 208 EVKNLRLALMDLHLKHKSLTRELQSR---QDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 208 E~~~Lq~~~~~L~~k~k~ls~e~~~l---~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
+-..++..++.|.++...++.++..+ .+..+....+.+.|+.++..+..++..+..++..+-..
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666531 22334455667777777777777777777776555443
No 285
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=31.18 E-value=2.5e+02 Score=23.91 Aligned_cols=47 Identities=28% Similarity=0.483 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHH-----HHHH---HHHHHHHHHHHhhhhHHHHH
Q 005010 448 IIAEFRALVSSFPEDMSAMQRQL-----SKYK---EAALDIHILRADVLSLTNVL 494 (719)
Q Consensus 448 ~~~E~r~Lissl~~~i~~Lk~Ev-----~R~K---e~~~e~~~Lr~e~~~l~~~l 494 (719)
.+.+++.+...|...+....+++ .+|+ .+..++..++.++..+...+
T Consensus 20 s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l 74 (87)
T PF08700_consen 20 SIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLL 74 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888777777 4444 46666666666655555444
No 286
>PF15456 Uds1: Up-regulated During Septation
Probab=31.08 E-value=4.6e+02 Score=24.75 Aligned_cols=68 Identities=22% Similarity=0.265 Sum_probs=47.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHhHHHH-------Hhh-----------hhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005010 201 ASSNLQSEVKNLRLALMDLHLKHKSLTREL-------QSR-----------QDIDAKDKAKLNRLKGELESAVKELEECN 262 (719)
Q Consensus 201 ~~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~-------~~l-----------~d~~~~~~~e~~~L~~eLe~~~~elek~~ 262 (719)
..+.|+.|...|...++.+..++. +..++ ..+ .+...+.+.++..+...+|++..+|.+++
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le 101 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLE 101 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 556677777777777777665555 33333 222 23455667888888889999999999999
Q ss_pred HHHHHHH
Q 005010 263 CKLAALR 269 (719)
Q Consensus 263 rkL~~lk 269 (719)
+++.+++
T Consensus 102 ~R~~~~~ 108 (124)
T PF15456_consen 102 NRLAEVR 108 (124)
T ss_pred HHHHHHH
Confidence 8887776
No 287
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.06 E-value=2.7e+02 Score=26.46 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT 343 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~ 343 (719)
+..|+++++.+...-+-|..+....-+....-+.+...++..
T Consensus 29 l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~ 70 (126)
T PF09403_consen 29 LNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAE 70 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666655555555544444444333333333333333
No 288
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=30.98 E-value=2.3e+02 Score=27.85 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=54.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 267 (719)
Q Consensus 202 ~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~ 267 (719)
-+.+..+...|+..++.|++.++.+...+..+.+.....+..-.+|..++..++...-...+++..
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e 149 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKE 149 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888999999999999888888888888888888888888888888888887777643
No 289
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.97 E-value=2.9e+02 Score=22.48 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHH
Q 005010 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELES 253 (719)
Q Consensus 209 ~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~ 253 (719)
+..|-+.+..|..+.-.|+.++..++..+.....|-.+-...|+.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666666666666644444444444444444443
No 290
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.91 E-value=2.3e+02 Score=24.28 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005010 597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQN 649 (719)
Q Consensus 597 e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn 649 (719)
|+-|.+|.-+++-.++.+.+|+..+.......+-+-.=|.-+-.-|.++|++|
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~ 59 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSA 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34444555555555555555555555555444444444444444444444443
No 291
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.77 E-value=6.4e+02 Score=26.32 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=9.1
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHH
Q 005010 617 LSDALKSKNEEIEAYLSEIETIG 639 (719)
Q Consensus 617 l~~~l~~~~~e~~al~~Eie~~g 639 (719)
++..+.+.+++...|-..|+.+.
T Consensus 75 l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 75 LERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433333333
No 292
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.72 E-value=2.6e+02 Score=27.61 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~l 268 (719)
+..|+..|+..+..|+.++..| +.++..|..++..+..+|...-.=++++
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~L--------------e~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEEL--------------EKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555554 3444444444455555555544433333
No 293
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=30.49 E-value=7.1e+02 Score=26.75 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccC
Q 005010 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNL 285 (719)
Q Consensus 206 ~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~ 285 (719)
..++..|..+.+.||.|+..-+.-+..+...+.+.+.+...+.-..+.++..|+.+.+-+. -.++.|....
T Consensus 8 ga~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~e-----Llaa~gc~a~---- 78 (389)
T KOG4687|consen 8 GAEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELE-----LLAACGCDAK---- 78 (389)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH-----HHHhcCCCch----
Confidence 3567788888999999999988889999777777777776666666666666655544331 1222221110
Q ss_pred CCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHH
Q 005010 286 GNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEK 365 (719)
Q Consensus 286 ~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~ 365 (719)
..++.+-.+|-+.++++++ |=.+|..+...|..+...|+.+ ...|..--.||..
T Consensus 79 ----------~e~gterqdLaa~i~etke-------eNlkLrTd~eaL~dq~adLhgD---------~elfReTeAq~es 132 (389)
T KOG4687|consen 79 ----------IEFGTERQDLAADIEETKE-------ENLKLRTDREALLDQKADLHGD---------CELFRETEAQFES 132 (389)
T ss_pred ----------hhccchhhHHHHHHHHHHH-------HhHhhhHHHHHHHHHHHHHhch---------HHHHHHHHHHHHH
Confidence 1111123556666666554 2233444444444444444433 2333333333332
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 366 S-KSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 366 l-k~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
- .+...+. --.....+.|+..+.+ ...+. .. +..+...|+.+|.-+..++++|..+-..
T Consensus 133 e~~a~aseN------aarneeelqwrrdean----fic~~-Eg---Lkak~a~LafDLkamideKEELimERDa 192 (389)
T KOG4687|consen 133 EKMAGASEN------AARNEEELQWRRDEAN----FICAH-EG---LKAKCAGLAFDLKAMIDEKEELIMERDA 192 (389)
T ss_pred HHhcccccc------cccchHHHHhhHHHHH----HHHHH-HH---HHHHhhhhhhHHHHHhchHHHHHHHHHH
Confidence 0 0000000 0112233455542331 11111 11 3678889999999888888888766544
No 294
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=30.26 E-value=8.6e+02 Score=27.87 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccc--hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 326 LHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (719)
Q Consensus 326 l~~e~~~L~~e~~~Lk~~l~~~--~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~ 387 (719)
|..+-..|...+++|+.-+.++ ||+. +-.+....|+..+..++..+...+.+++.-....
T Consensus 211 L~~~sd~Ll~kVdDLQD~VE~LRkDV~~--RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 211 LSEESDRLLTKVDDLQDLVEDLRKDVVQ--RGVRPSPKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555666666655554 4433 4555566666666666666666665555544443
No 295
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=30.23 E-value=2e+02 Score=29.06 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=51.5
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~ 476 (719)
++....|+.+|+..+...-.|.-.++-++...+. .....++....+++++.+..|+-++.++++.
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777888887777777777777776666664 4777799999999999999999999888864
No 296
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.01 E-value=6.1e+02 Score=29.10 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhh----hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQD----IDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d----~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
|-.+-..+...++.|+++.+.++.++..... ......++++.|+.+++++...+..+...+..+-..
T Consensus 34 ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ 104 (429)
T COG0172 34 LDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLT 104 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 4445667777888888888888888874322 235577888888888888888888888777666544
No 297
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=29.55 E-value=1.1e+03 Score=28.79 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhH---HHHHHHHHHHHhcC
Q 005010 366 SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDE---KNRIEMRLEEASRE 442 (719)
Q Consensus 366 lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~e---re~L~~e~e~~~~~ 442 (719)
+...+..++-...+-+...+.+.+.+.+.+ +++ ...+.+|.-+|..+.-.-.+ -..+..+++...+.
T Consensus 33 ~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~--------aqk--~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lan 102 (916)
T KOG0249|consen 33 LEHSLPEARKDLIKAEEMNTKLQRDIREAM--------AQK--EDMEERITTLEKRFLNAQRESTSIHDLNDKLENELAN 102 (916)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhhhhHH--------hhh--cccccccchHHHHHHhccCCCCCcccchHHHHHHHhC
Confidence 344555556666566666666666654443 111 12356666666666542111 12334444444443
Q ss_pred CCChhHHHHHHHHHhhcHHHHHHHHHHH
Q 005010 443 PGRKEIIAEFRALVSSFPEDMSAMQRQL 470 (719)
Q Consensus 443 ~~k~~~~~E~r~Lissl~~~i~~Lk~Ev 470 (719)
.. ..++.+..-+-+++.++...+-++
T Consensus 103 kd--a~lrq~eekn~slqerLelaE~~l 128 (916)
T KOG0249|consen 103 KD--ADLRQNEEKNRSLQERLELAEPKL 128 (916)
T ss_pred cc--hhhchhHHhhhhhhHHHHHhhHhh
Confidence 33 445556666667888888777666
No 298
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=29.55 E-value=3.7e+02 Score=24.71 Aligned_cols=47 Identities=28% Similarity=0.259 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005010 548 DVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEA 609 (719)
Q Consensus 548 d~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~ 609 (719)
-|-+|+++|+++..-|...|++= -.|.|.|.+ .++.||+..+.+.+.
T Consensus 7 GIqQLLqAEK~A~e~V~~ARk~K-----~~RLKQAKe----------EA~~Eie~yr~qrE~ 53 (108)
T KOG1772|consen 7 GIQQLLQAEKRAAEKVEEARKRK-----LRRLKQAKE----------EAEKEIEEYRSQREK 53 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 48899999999999999998852 124555543 456677777766554
No 299
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.18 E-value=1e+03 Score=28.17 Aligned_cols=153 Identities=10% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccccccccCC
Q 005010 44 QFQNQ--KLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDV 121 (719)
Q Consensus 44 qfQn~--kL~rqLe~~kre~~~Le~rie~Le~rq~~~d~~L~~Vnr~W~QL~ddi~lL~~r~~~~~~~~~~~~~~~~~~~ 121 (719)
.||.. -|.++.+.|-.++..++.+++.+++++..-.+.+--+.---.-|+.-+.-|..+++....
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp------------- 651 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELP------------- 651 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCC-------------
Q ss_pred CCCCCchHHHHHHhhcccCCCCCCCCCcchHHHHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCCchhhh
Q 005010 122 TPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKA 201 (719)
Q Consensus 122 ~~~~~~~~fL~~Ll~~~~t~ss~~~~~~~~~e~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~~~~d~~~~~~ 201 (719)
+...++-.| ..++ .-+..-...-.+.+..+-..++.++.-++..-.++.+. .
T Consensus 652 ~l~~AErdF------------------k~El-q~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~---------~ 703 (741)
T KOG4460|consen 652 VLSDAERDF------------------KKEL-QLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKP---------T 703 (741)
T ss_pred cchhHHHHH------------------HHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---------c
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhh
Q 005010 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDID 237 (719)
Q Consensus 202 ~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~ 237 (719)
...-...-.-+++-+..|-..+..++-+....+..+
T Consensus 704 Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~v 739 (741)
T KOG4460|consen 704 YILSAYQRKCIQSILKELGEHIREMVKQVKDIRNHV 739 (741)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 300
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=29.17 E-value=4.6e+02 Score=24.18 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (719)
Q Consensus 206 ~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~r 263 (719)
..-+..|+..+.....-+..+..+-..|...+...++........+.+++..+..+++
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444433
No 301
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.95 E-value=4.7e+02 Score=24.15 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=12.4
Q ss_pred HhhHHHHHHHhHHHHHHHHHHH
Q 005010 417 DLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 417 ~lE~~LarvR~ere~L~~e~e~ 438 (719)
+++..+.+.-.++..+...+-+
T Consensus 83 ~l~~r~~k~~~dka~lel~l~e 104 (107)
T PF09304_consen 83 ELESRLLKAQKDKAILELKLAE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHh
Confidence 4555555555666665555544
No 302
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=28.87 E-value=1.8e+02 Score=22.77 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=23.2
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005010 41 AVLQFQNQK--LVQKLETQKVEYSALENKFAQLKERQ 75 (719)
Q Consensus 41 ~vLqfQn~k--L~rqLe~~kre~~~Le~rie~Le~rq 75 (719)
.++.||++. ..+.|- +..+.+..|++.|+.++
T Consensus 13 slv~FQ~~v~~~lq~Lt---~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 13 SLVAFQNKVTSALQSLT---QKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence 389999984 344444 34888888998888775
No 303
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.05 E-value=3.7e+02 Score=31.86 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccc-hhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT-LKSV-KCLSSSKAFLSVKNQLEKSKSEVFKYQALFE 378 (719)
Q Consensus 301 ~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~-l~~~-~~I~~S~~yk~L~~q~~~lk~eld~~r~~~e 378 (719)
..++++..+++....-..|..+|.. ..+...+.+.+..|+-. ++++ +.......|..|+.++...+..+..++ .
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~---~ 240 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAK---N 240 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3688889999999999999998874 66677777777777664 4555 444444566666666644444444333 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 005010 379 KLQVEKDNLAWRETEL 394 (719)
Q Consensus 379 kLq~er~~~~~~~~E~ 394 (719)
.|+.++.++..+..++
T Consensus 241 ~l~~~~~~~~~~~~~l 256 (555)
T TIGR03545 241 DLQNDKKQLKADLAEL 256 (555)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3677777777776444
No 304
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=28.02 E-value=5.3e+02 Score=24.51 Aligned_cols=37 Identities=14% Similarity=0.006 Sum_probs=22.3
Q ss_pred hhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 348 KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEK 384 (719)
Q Consensus 348 ~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er 384 (719)
.||.+.+.++.++.....+...+..+-...-.++.+.
T Consensus 21 ~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l 57 (150)
T PF07200_consen 21 AFVKSLPQVQELQQEREELLAENEELAEQNLSLEPEL 57 (150)
T ss_dssp HHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 6777788888888888887777776665543333333
No 305
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.72 E-value=9.6e+02 Score=27.41 Aligned_cols=133 Identities=16% Similarity=0.121 Sum_probs=87.7
Q ss_pred HHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcc----ccccCC---
Q 005010 214 LALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFF----PVLNLG--- 286 (719)
Q Consensus 214 ~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~----~~~~~~--- 286 (719)
...+.+-++|+++..++.++.+..-..+.+++.|+..++++..-+.+--+.--++..+...-.-..+ .-.++-
T Consensus 145 e~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~ll 224 (446)
T KOG4438|consen 145 ELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLL 224 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 4445566779999999999999999999999999999999888888776655554433211110000 000000
Q ss_pred CCCC-CCCCc--cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005010 287 NKHV-AGDRV--RDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS 346 (719)
Q Consensus 287 ~~~~-~~~~~--~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~ 346 (719)
-.+. .+... .......+.|...++|.+.+..++..-+.++......|...++.|+.=-.+
T Consensus 225 v~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e 287 (446)
T KOG4438|consen 225 VVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKE 287 (446)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 0000 00000 000001467888899999999999999999999999999998888865444
No 306
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=27.66 E-value=2.6e+02 Score=28.64 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005010 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL 344 (719)
Q Consensus 312 ~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l 344 (719)
++.+|..|-.-|.+..+||..|.++++.+..++
T Consensus 109 Wk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi 141 (200)
T PF07412_consen 109 WKELAEERRKALEEALEENEKLHKEIEQKDEEI 141 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999988888888766653
No 307
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.65 E-value=3.7e+02 Score=26.88 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=17.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 236 IDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (719)
Q Consensus 236 ~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~l 268 (719)
...+...+++.|+.+|++...+++...++...+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666555555555544444
No 308
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=27.57 E-value=7.1e+02 Score=25.80 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 326 LHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (719)
Q Consensus 326 l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~ 391 (719)
+..+..-+..++..++..+..-. ..-..++.+...+...+......+..||.-.+..+...
T Consensus 155 l~ae~~~l~~~~~~le~el~s~~-----~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~e 215 (240)
T PF12795_consen 155 LQAELAALEAQIEMLEQELLSNN-----NRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQE 215 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544331 11124455555566666677777666777777766664
No 309
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.41 E-value=1.3e+03 Score=28.91 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=8.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHH
Q 005010 518 LQAMVQDLTDSNLELKLILDMY 539 (719)
Q Consensus 518 Lk~~l~ka~~~~~elkl~ldmy 539 (719)
+..++..+.....+++..++-|
T Consensus 557 l~~e~~~le~~~~~l~~~~~~~ 578 (908)
T COG0419 557 LKEELRQLEDRLQELKELLEEL 578 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444433
No 310
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=27.24 E-value=1.5e+03 Score=29.42 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
..+.+.++..++++-.++..+++++++++
T Consensus 64 ~~~~~~~~~~i~~ap~~~~~~~~~l~~~~ 92 (1109)
T PRK10929 64 LERAKQYQQVIDNFPKLSAELRQQLNNER 92 (1109)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 77888888899999988888888887655
No 311
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=27.23 E-value=9.7e+02 Score=27.32 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=6.8
Q ss_pred hhHHHHHHHhHHHHHHHH
Q 005010 418 LGIEIQKQIDEKNRIEMR 435 (719)
Q Consensus 418 lE~~LarvR~ere~L~~e 435 (719)
++..+..++.....|.++
T Consensus 102 ~~~~~~~~~~~~~rL~a~ 119 (457)
T TIGR01000 102 LEQQLDNLKDQKKSLDTL 119 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 312
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.21 E-value=5.5e+02 Score=24.38 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=26.1
Q ss_pred HHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 214 LALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (719)
Q Consensus 214 ~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~l 268 (719)
+.++.|-.+..+...=....++.++..+..+.++.+.++..+.-....+.|+.++
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444445555555555555555555555555544
No 313
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.12 E-value=7.7e+02 Score=26.46 Aligned_cols=88 Identities=23% Similarity=0.237 Sum_probs=64.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHhhhhhhhh
Q 005010 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQN----QQLLQQITERDDYN 663 (719)
Q Consensus 588 ~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn----~~ll~ql~e~dd~n 663 (719)
..+||+.+.-..|..|++.|+..+-.-.-+.......+-.-+++-+|.+-+..---||--.| +.|.-.|.+-..-|
T Consensus 20 AlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeN 99 (389)
T KOG4687|consen 20 ALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEEN 99 (389)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHh
Confidence 34566666777777788877777665555555555556667777788887777666777777 89999999999999
Q ss_pred hHHHHHhHhhhh
Q 005010 664 IKLVLEGVRARQ 675 (719)
Q Consensus 664 ~kl~~E~~ka~q 675 (719)
+||-+++----+
T Consensus 100 lkLrTd~eaL~d 111 (389)
T KOG4687|consen 100 LKLRTDREALLD 111 (389)
T ss_pred HhhhHHHHHHHH
Confidence 999888754333
No 314
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.86 E-value=2.2e+02 Score=30.37 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=41.4
Q ss_pred HHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 219 LHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 219 L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
|++-.+....+++.+++.+.-.-+....|...|+.-..+|+..++||..|.+-
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqsi 162 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSI 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555666666677777778888889999999999999999999998743
No 315
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.78 E-value=8.7e+02 Score=26.57 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (719)
Q Consensus 207 ~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~r 263 (719)
.+...++..+..+...+.....++..+++.+......|+....+..++..++..+++
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666655566666555555555555555555555555555554
No 316
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=26.72 E-value=85 Score=26.69 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005010 624 KNEEIEAYLSEIETIGQSYDDMQTQNQQ 651 (719)
Q Consensus 624 ~~~e~~al~~Eie~~gqA~edmq~Qn~~ 651 (719)
..++...+++|+|.|+..|-+||.--+.
T Consensus 33 ld~~~~ClL~e~e~i~~~f~~~q~~Ass 60 (70)
T PF10372_consen 33 LDEDDCCLLCEFEEIREKFLDIQTLASS 60 (70)
T ss_dssp TT-TT--GGGGHHHHHHHHHHHHHHHHH
T ss_pred hccCCceechhHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999976544
No 317
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.60 E-value=6.9e+02 Score=25.36 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcH--HHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Q 005010 549 VLAARDLEYKAWAHVHSLKSSLDEQSL--ELRVKTAIEAE-AISQQRLAAAEAEIADMRQKLEAFKRDMVSLSD 619 (719)
Q Consensus 549 ~~~~~~~E~~~~ae~~~Lk~~L~e~~~--~~rvk~~~e~e-~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~ 619 (719)
++..++...++..+++.+...+.+... ..=++..+|.- ..+..+....+..+..|...++.....+..|..
T Consensus 46 ~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~ 119 (221)
T PF04012_consen 46 LARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKE 119 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666665544322 11111112211 134444445555555555555554443333333
No 318
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=26.58 E-value=2.9e+02 Score=22.74 Aligned_cols=59 Identities=22% Similarity=0.451 Sum_probs=35.8
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHH---HhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEE---ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK 472 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~---~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R 472 (719)
+.++..|+.++.++..+.+.+...+.. ...++. .++..=+.-...+..++..|...+..
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~--eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPE--EVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-C--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777777777765 444444 55555555555555555555554433
No 319
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.38 E-value=6.4e+02 Score=24.93 Aligned_cols=18 Identities=0% Similarity=0.364 Sum_probs=9.4
Q ss_pred HhhcHHHHHHHHHHHHHH
Q 005010 456 VSSFPEDMSAMQRQLSKY 473 (719)
Q Consensus 456 issl~~~i~~Lk~Ev~R~ 473 (719)
|+.+..+|..++-++-||
T Consensus 140 i~~lr~~iE~~K~~~lr~ 157 (177)
T PF07798_consen 140 IANLRTEIESLKWDTLRW 157 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555555
No 320
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=26.30 E-value=1.7e+02 Score=28.37 Aligned_cols=29 Identities=10% Similarity=0.313 Sum_probs=22.2
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHhh
Q 005010 72 KERQQPYDSTLKVVNKSWEELITDLESCS 100 (719)
Q Consensus 72 e~rq~~~d~~L~~Vnr~W~QL~ddi~lL~ 100 (719)
-.+..+.+....+++..|+++|.++-+--
T Consensus 69 ~g~~~~~~~~~q~~~qvW~~~V~~~ll~~ 97 (145)
T PF13623_consen 69 NGRSPTEQEQNQIRNQVWNQMVQNILLEQ 97 (145)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666678899999999999986543
No 321
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.94 E-value=2.4e+02 Score=30.20 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=33.9
Q ss_pred HhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 225 SLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 225 ~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
.+..+++..++.+....++-..|...++.-..||+.+++||..|+
T Consensus 173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555577888899999999999999999998887
No 322
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=25.86 E-value=7.2e+02 Score=26.09 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=48.1
Q ss_pred HHHHHHHHHHH--HHHhhhhhhcHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHH
Q 005010 554 DLEYKAWAHVH--SLKSSLDEQSLEL-RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEA 630 (719)
Q Consensus 554 ~~E~~~~ae~~--~Lk~~L~e~~~~~-rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~a 630 (719)
-.|++.++++. .+...+.-|..-- ..|.|. .-++||...|-|-++-..+|.++ ++..--
T Consensus 91 ~~eakvraei~~mkVt~kvn~h~kI~g~rKtA~----~~~rKl~~ke~E~~EKErqlSeA--------------eEn~kl 152 (265)
T PF06409_consen 91 HMEAKVRAEIRKMKVTTKVNSHYKINGKRKTAK----KHLRKLSMKECEHAEKERQLSEA--------------EENGKL 152 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhHHHhhH----HHHHHHHHHHHHHHHHHhhhhhh--------------hhccch
Confidence 46777888887 4444454443311 122232 12466776666666655555554 334444
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 005010 631 YLSEIETIGQSYDDMQTQNQQ 651 (719)
Q Consensus 631 l~~Eie~~gqA~edmq~Qn~~ 651 (719)
-+.||.+--+-|.+||++-+|
T Consensus 153 ~mkei~tY~~~fQ~~Qel~~R 173 (265)
T PF06409_consen 153 AMKEIHTYKQMFQRMQELQQR 173 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999997654
No 323
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=25.78 E-value=8.5e+02 Score=26.13 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=38.8
Q ss_pred HHhhHHHHHHHhHHHHHHH----HHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 005010 416 ADLGIEIQKQIDEKNRIEM----RLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKE 475 (719)
Q Consensus 416 ~~lE~~LarvR~ere~L~~----e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke 475 (719)
......|++++++.+|... +.+..+.+-++ +....|-..+.+|+..+-..|+.++....+
T Consensus 88 ~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se 152 (268)
T PF11802_consen 88 TLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE 152 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 3445556666666666533 22334444444 577788888999999999999888754433
No 324
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.58 E-value=5.7e+02 Score=24.05 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 005010 311 ELMDQASHQLL 321 (719)
Q Consensus 311 E~k~la~~Rl~ 321 (719)
++......|..
T Consensus 94 eA~~~l~~~~~ 104 (140)
T PRK03947 94 EAIEILDKRKE 104 (140)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 325
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.55 E-value=1.3e+03 Score=28.38 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhH
Q 005010 629 EAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIK 665 (719)
Q Consensus 629 ~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~k 665 (719)
+.|-+=-|-+....|-.-+.|.++.--+-++|+..++
T Consensus 451 e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~ 487 (861)
T PF15254_consen 451 ELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE 487 (861)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444445555566777777777777765443
No 326
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=25.39 E-value=6.6e+02 Score=24.76 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHH
Q 005010 513 AEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQR 592 (719)
Q Consensus 513 ~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~k 592 (719)
.+...++.++...+..+.+.=.-+|-+.. .|+++|..+-..-...+.+..+ .+|.|=|.-...|-+
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~-------------~er~aR~rL~eVS~~f~~ysE~-dik~AYe~A~~lQ~~ 92 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEK-------------RERQARQRLAEVSRNFDRYSEE-DIKEAYEEAHELQVR 92 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhcccCHH-HHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHH-------HHHHHHHHHHHHHHhHHHHHH
Q 005010 593 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNE-------EIEAYLSEIETIGQSYDDMQT 647 (719)
Q Consensus 593 l~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~-------e~~al~~Eie~~gqA~edmq~ 647 (719)
|....++-..||..-+..++.+..+...+.-.+. -.+-|.+.+..+|.++++++.
T Consensus 93 L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 93 LAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 327
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.14 E-value=95 Score=30.07 Aligned_cols=121 Identities=9% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccccccccCCCCCCCc
Q 005010 48 QKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSH 127 (719)
Q Consensus 48 ~kL~rqLe~~kre~~~Le~rie~Le~rq~~~d~~L~~Vnr~W~QL~ddi~lL~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (719)
+.+.-.|+.|+.++..|...|..|+.-+..++..+.+|+..| .+-.+|..=.+...-. ......
T Consensus 6 q~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~----~~~eiLVPLg~s~yV~------------g~i~d~ 69 (144)
T PRK14011 6 QNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK----TSEEILIPLGPGAFLK------------AKIVDP 69 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCCeEEEEcCCCcEEe------------EEecCC
Q ss_pred hHHHHHHhhcccCCCCCCCCCcchHHHHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHh
Q 005010 128 DAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVL 189 (719)
Q Consensus 128 ~~fL~~Ll~~~~t~ss~~~~~~~~~e~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~ 189 (719)
+.++..+ -+|-.-.-+ .++.-+.+..|+.........|...+.......+.|...|.
T Consensus 70 dkVlVdI-GtGy~VEk~----~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~ 126 (144)
T PRK14011 70 DKAILGV-GSDIYLEKD----VSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELE 126 (144)
T ss_pred CeEEEEc-cCCeEEEec----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 328
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=25.03 E-value=1.5e+03 Score=28.92 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005010 49 KLVQKLETQKVEYSALENKF 68 (719)
Q Consensus 49 kL~rqLe~~kre~~~Le~ri 68 (719)
+|+.+...-+..+..++.++
T Consensus 188 ~l~er~k~~~~~l~~l~~~l 207 (1047)
T PRK10246 188 MVFEQHKSARTELEKLQAQA 207 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555
No 329
>PRK11519 tyrosine kinase; Provisional
Probab=24.99 E-value=1.3e+03 Score=28.09 Aligned_cols=113 Identities=8% Similarity=0.075 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhc
Q 005010 362 QLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASR 441 (719)
Q Consensus 362 q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~ 441 (719)
-...+..++...+..++..+.....|+.+-.-. +...-++.. -..+..++.++..+.....+|..
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~v----d~~~ea~~~----l~~~~~l~~ql~~l~~~~~~l~~------- 332 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV----DLPLEAKAV----LDSMVNIDAQLNELTFKEAEISK------- 332 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 334466666666666666666666666653111 111101111 13345555555555444444332
Q ss_pred CCC-ChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005010 442 EPG-RKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLS 489 (719)
Q Consensus 442 ~~~-k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~ 489 (719)
..+ +-|.+..+..-..+++.++..+++++..+-....++..|..+++-
T Consensus 333 ~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~ 381 (719)
T PRK11519 333 LYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVES 381 (719)
T ss_pred HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 233 246666666666777777777777776666666666666666553
No 330
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.88 E-value=5.9e+02 Score=23.96 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=20.4
Q ss_pred hhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcC
Q 005010 410 VTDSKIADLGIEIQKQIDEKNRIEMRLEEASRE 442 (719)
Q Consensus 410 ~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~ 442 (719)
.++..+..+..+++.++...+.+...+.+..+.
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666777666666666664433
No 331
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.78 E-value=74 Score=29.48 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 005010 322 ELKGLHDGRIKVLQQLYNLQNTLKS 346 (719)
Q Consensus 322 ELe~l~~e~~~L~~e~~~Lk~~l~~ 346 (719)
+++.|..++..|..++..|+..+..
T Consensus 33 ~~~~l~~e~~~L~~~~~~l~~~l~~ 57 (131)
T PF05103_consen 33 ELERLQRENAELKEEIEELQAQLEE 57 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5556666777777777776666543
No 332
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.61 E-value=4.1e+02 Score=22.30 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=11.7
Q ss_pred HhHHHHHhhhhhhHHhHHHHHHHHHHH
Q 005010 225 SLTRELQSRQDIDAKDKAKLNRLKGEL 251 (719)
Q Consensus 225 ~ls~e~~~l~d~~~~~~~e~~~L~~eL 251 (719)
.+..+...+.++...++++|+-|=..|
T Consensus 32 ~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 32 TWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444455554444433
No 333
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=24.50 E-value=7.8e+02 Score=25.27 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 005010 62 SALENKFAQLKERQQPYDSTLKVVNKSWEELITD 95 (719)
Q Consensus 62 ~~Le~rie~Le~rq~~~d~~L~~Vnr~W~QL~dd 95 (719)
.+|+.+|+-++.-|.+|...|.+|..|-++|..-
T Consensus 2 ~ELdakielfrsvq~t~~~Llk~i~~yq~~l~~l 35 (204)
T cd07661 2 AELDAKLELFRSVQDTCLELLKIIDNYQERLCIL 35 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999998876543
No 334
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=24.33 E-value=6.3e+02 Score=25.30 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 313 MDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRET 392 (719)
Q Consensus 313 k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~ 392 (719)
..+-..=+.|++.++.-...-..++.+|..- .+..|.-+.+-.-++-|.+++.||+=|.+++.++.
T Consensus 97 ~~L~~~T~~Elq~mr~~ln~FR~qm~dlE~~--------------l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElq 162 (179)
T PF14723_consen 97 RELYSCTVQELQQMRRSLNSFREQMMDLELH--------------LMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQ 162 (179)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555667777666666666666666554 34455555555556778888889999999988876
Q ss_pred HH
Q 005010 393 EL 394 (719)
Q Consensus 393 E~ 394 (719)
|+
T Consensus 163 EL 164 (179)
T PF14723_consen 163 EL 164 (179)
T ss_pred HH
Confidence 66
No 335
>PRK02119 hypothetical protein; Provisional
Probab=24.20 E-value=1.7e+02 Score=25.01 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHh
Q 005010 60 EYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESC 99 (719)
Q Consensus 60 e~~~Le~rie~Le~rq~~~d~~L~~Vnr~W~QL~ddi~lL 99 (719)
++..++.||..|+.|.+.-++++-.+|..-..--..|..|
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L 42 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKM 42 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 336
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=23.92 E-value=8.2e+02 Score=25.74 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred ccCCCCCCCC---CcchHHHHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCCchhhhhhhhHHHHHHHHH
Q 005010 138 GATESSSADN---CPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRL 214 (719)
Q Consensus 138 ~~t~ss~~~~---~~~~~e~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~~~~d~~~~~~~~~L~~E~~~Lq~ 214 (719)
|-..++.+|. ....++.+|+.|+.....+...+-....... +. +.....+||-
T Consensus 145 G~ll~~~~ngq~l~Gd~l~~eLqkr~~~v~~l~~q~~k~~~~qv-----------~~-------------in~qlErLRL 200 (289)
T COG4985 145 GKLLRFDSNGQELDGDPLERELQKRLLEVETLRDQVDKMVEQQV-----------RV-------------INSQLERLRL 200 (289)
T ss_pred hheeeeccCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-------------HHHHHHHHHH
Q ss_pred HHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 005010 215 ALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEE 260 (719)
Q Consensus 215 ~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek 260 (719)
.--.|+...+--+.-.+++....+..+.+.+.|.++|+.++.++.+
T Consensus 201 ~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 201 EKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
No 337
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=23.85 E-value=4.4e+02 Score=22.11 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCC--ChhHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 005010 430 NRIEMRLEEASREPG--RKEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (719)
Q Consensus 430 e~L~~e~e~~~~~~~--k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~ 473 (719)
+.+...+.......| +...+.++...+....+-+.+|+-|++-+
T Consensus 6 ~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 6 AEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555444444 36777777788888888888888777433
No 338
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.76 E-value=4e+02 Score=28.55 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=36.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 267 (719)
Q Consensus 202 ~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~ 267 (719)
...+..++..++..++.+......+..++..-+..+...+.+++-|+.=.=..+.||++++..|..
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 344455555555556555555555555555554444444555555554444455677777776643
No 339
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=23.64 E-value=8.1e+02 Score=25.12 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=18.3
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHH
Q 005010 455 LVSSFPEDMSAMQRQLSKYKEAA 477 (719)
Q Consensus 455 Lissl~~~i~~Lk~Ev~R~Ke~~ 477 (719)
-|.++..+|..++-++.+|.+..
T Consensus 5 ~va~lnrri~~leeele~aqErl 27 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERL 27 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999998887653
No 340
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.30 E-value=1.3e+03 Score=27.35 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHh
Q 005010 628 IEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVR 672 (719)
Q Consensus 628 ~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~k 672 (719)
.+-++.+|+.|-|-.+.|--.-+.-=|-++|++-....|..+|-|
T Consensus 516 ~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk 560 (654)
T KOG4809|consen 516 IEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRK 560 (654)
T ss_pred HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999988888888899999999999988876
No 341
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=23.25 E-value=1.3e+03 Score=27.23 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhhhcccCCCCcc-ccccccccCCCCCC
Q 005010 47 NQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQE-SRCLSIIEDVTPHP 125 (719)
Q Consensus 47 n~kL~rqLe~~kre~~~Le~rie~Le~rq~~~d~~L~~Vnr~W~QL~ddi~lL~~r~~~~~~~~~-~~~~~~~~~~~~~~ 125 (719)
+..|.+|..+....|..||..-+..-=...-..-.|-.=+..|.++...+.-.-........... ..+....+......
T Consensus 304 ~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l~~~~e~~se~s~~~~ 383 (518)
T PF10212_consen 304 REGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVLSEASEQQSEASSQSV 383 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhccccccccccccccc
Q ss_pred CchHHHHHHhhcccCCCCCCCCCcchHHHHHhhhhhhHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCCchhhhhhhh
Q 005010 126 SHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNL 205 (719)
Q Consensus 126 ~~~~fL~~Ll~~~~t~ss~~~~~~~~~e~~L~~R~~~tk~~l~~lv~~~~~~~~~~~~l~~~l~~~~~~d~~~~~~~~~L 205 (719)
..+.+...+..+-...+-.+ .++.+..=..-...-...|..|+........+. +. .
T Consensus 384 ~e~~~~t~l~gml~~~~~~~---~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa------~~---------------f 439 (518)
T PF10212_consen 384 DEPLQPTSLSGMLTSTSEQE---SPEEESREQLIKSYYMSRIEELTSQLQHADSKA------VH---------------F 439 (518)
T ss_pred cccccccccccccccccccc---CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---------------H
Q ss_pred HHHHHHHHHHHH-------HHHHHhHHhHHHHHhhhhhhHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 206 QSEVKNLRLALM-------DLHLKHKSLTRELQSRQDIDAKDK----AKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 206 ~~E~~~Lq~~~~-------~L~~k~k~ls~e~~~l~d~~~~~~----~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
..|+..|+..+. .+....+.....+.+++|.++..+ ..+.-|.++|-.+...|.+-...++.||
T Consensus 440 ~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 440 YAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 342
>PF14992 TMCO5: TMCO5 family
Probab=23.12 E-value=9.7e+02 Score=25.87 Aligned_cols=165 Identities=13% Similarity=0.149 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhhhcCh--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 305 MESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS---VKCLSSSK--AFLSVKNQLEKSKSEVFKYQALFEK 379 (719)
Q Consensus 305 L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~---~~~I~~S~--~yk~L~~q~~~lk~eld~~r~~~ek 379 (719)
+....-.+.+.+..=+.-+++....++.|.+++..+---+.. .++|.+-+ .|+.|.-.-..|...++....-+..
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~e 88 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQE 88 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhh
Confidence 444555566777788889999999999999999988765553 25555332 3455554445555555554333344
Q ss_pred HHHHHHHHHHHH---HHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005010 380 LQVEKDNLAWRE---TELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALV 456 (719)
Q Consensus 380 Lq~er~~~~~~~---~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Li 456 (719)
||.+.+.--..+ .+. ++. +..-+......+...++.+|..+++|.++|+...--- ..+..+=+.+..-++.+-
T Consensus 89 lq~k~~e~~~~~~~e~~~-~~~-~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~--eDq~~~i~klkE~L~rmE 164 (280)
T PF14992_consen 89 LQRKQDEQETNVQCEDPQ-LSQ-SLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLC--EDQANEIKKLKEKLRRME 164 (280)
T ss_pred hhhhhccccCCCCCCccc-hhc-ccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 555533110000 000 000 0000111112234455566666666666555431111 112222112222333333
Q ss_pred hhcHHHHHHHHHHHHHHHH
Q 005010 457 SSFPEDMSAMQRQLSKYKE 475 (719)
Q Consensus 457 ssl~~~i~~Lk~Ev~R~Ke 475 (719)
+ ..+|..|..++.+|-.
T Consensus 165 ~--ekE~~lLe~el~k~q~ 181 (280)
T PF14992_consen 165 E--EKEMLLLEKELSKYQM 181 (280)
T ss_pred H--HHHHHHHHHHHHHHhc
Confidence 3 6677777777777754
No 343
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.89 E-value=2.4e+02 Score=22.93 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 005010 625 NEEIEAYLSEIETIGQSYDDMQTQN 649 (719)
Q Consensus 625 ~~e~~al~~Eie~~gqA~edmq~Qn 649 (719)
..+...|..++..+.+.+..|..+|
T Consensus 39 ~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 39 ESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566666666666666666666655
No 344
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.81 E-value=2.8e+02 Score=27.44 Aligned_cols=56 Identities=18% Similarity=0.375 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHH---------HHHHHhHHHHHHHHHHH
Q 005010 597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI---------ETIGQSYDDMQTQNQQL 652 (719)
Q Consensus 597 e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Ei---------e~~gqA~edmq~Qn~~l 652 (719)
|+|-++||..|...+..+..|...|.+|+....-|..-+ ..+++-|.++|.=|.=+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~ 92 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYK 92 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHH
Confidence 455677888888888888888888888877666554332 34566666666666544
No 345
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.71 E-value=7.1e+02 Score=24.18 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005010 309 HKELMDQASHQLLELKGLHD 328 (719)
Q Consensus 309 leE~k~la~~Rl~ELe~l~~ 328 (719)
++++-+...+|..+|++..+
T Consensus 92 ~~eAie~l~k~~~~l~~~~~ 111 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIE 111 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 346
>PRK15396 murein lipoprotein; Provisional
Probab=22.50 E-value=3.6e+02 Score=23.40 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (719)
Q Consensus 208 E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~l 268 (719)
++..|.++++.|..+.-.+.. .+..+......++.|-.+++.|||..
T Consensus 26 kvd~LssqV~~L~~kvdql~~--------------dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSN--------------DVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666555555444 44444555555556666666666543
No 347
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.39 E-value=1.2e+03 Score=26.81 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=14.8
Q ss_pred HHHhhHhhHHHHHHHHHhhhhhhccc
Q 005010 693 QANASLNFFDMKAARIENQVCLFGIF 718 (719)
Q Consensus 693 ~~~~~~e~~~~~~~~~e~~~~~~~~~ 718 (719)
+.+..+......|..|+||.|=+..|
T Consensus 425 ~~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 425 REKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhee
Confidence 33344444556667777777665544
No 348
>PLN02678 seryl-tRNA synthetase
Probab=22.18 E-value=5.1e+02 Score=29.85 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETE 393 (719)
Q Consensus 361 ~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E 393 (719)
+++-.+-.+.-.+...++.|+.+++.+..++..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555666677777777777644
No 349
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.07 E-value=3.4e+02 Score=31.95 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (719)
Q Consensus 208 E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~r 263 (719)
|...|+..-..|+....++-.++..++..+-..+.++.+|+++++.++-.++.++.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34444444444444444455555555555666677777777777777777766654
No 350
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.86 E-value=6.3e+02 Score=23.96 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=19.7
Q ss_pred hcchhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005010 506 ASSADQVAEIHKLQAMVQDLTDSNLELKLI 535 (719)
Q Consensus 506 ~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ 535 (719)
.+.......|+..|.++..+...-.|+.++
T Consensus 30 ~R~~~lk~dik~~k~~~enledA~~EieL~ 59 (131)
T KOG1760|consen 30 SRKDDLKADIKEAKTEIENLEDASNEIELL 59 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 344455667777777777777766666554
No 351
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=21.65 E-value=6.1e+02 Score=23.02 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
+...+.+++...-.+...++.+..++..+......... -..+..+|+.++.+|...+++...++
T Consensus 15 l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 15 LQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666777777777777777555544444 55678888899999999888887776
No 352
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.60 E-value=8.5e+02 Score=24.66 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL 344 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l 344 (719)
+.+++..+.+++.....-...-..+..+...+..++..+....
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777777777777777777777777666553
No 353
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=21.55 E-value=6.1e+02 Score=22.96 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHH---HHHHHHH---HHHHHHHHHHHHHH
Q 005010 308 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVK---NQLEKSK---SEVFKYQALFEKLQ 381 (719)
Q Consensus 308 eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~---~q~~~lk---~eld~~r~~~ekLq 381 (719)
.....++.-+.--.|-..|+.+...+.+.+..|...|....- .|..|+.+. .++..++ ...-+-+..+.-|.
T Consensus 9 qR~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~--~s~ey~~i~~I~~eY~k~Kk~~p~y~~~K~Rc~yL~ 86 (101)
T PF07303_consen 9 QRQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPP--GSQEYKRIAQILQEYNKKKKRDPNYQEKKKRCEYLH 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-T--TSHHHHHHH---HHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 445666777777778888999999999999999999876522 688888887 6666664 34455555555566
Q ss_pred HHHHHHHHHHHH
Q 005010 382 VEKDNLAWRETE 393 (719)
Q Consensus 382 ~er~~~~~~~~E 393 (719)
....-+.+++.+
T Consensus 87 ~KL~HIK~~I~~ 98 (101)
T PF07303_consen 87 NKLSHIKQLIQD 98 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666555555433
No 354
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.50 E-value=2e+02 Score=24.11 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 005010 63 ALENKFAQLKERQQPYDSTLKVVNKSWEELITD 95 (719)
Q Consensus 63 ~Le~rie~Le~rq~~~d~~L~~Vnr~W~QL~dd 95 (719)
.++.||.+|+.+.+.-++++-.+|..-.+--..
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~ 33 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQ 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999888774443333
No 355
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=21.49 E-value=5.8e+02 Score=22.67 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005010 556 EYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAF 610 (719)
Q Consensus 556 E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~ 610 (719)
...+.++...|...|++.... ..++.+..+..+.....+.+..|...+...
T Consensus 41 ~~~I~~~f~~l~~~L~~~e~~----ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l 91 (127)
T smart00502 41 EAQIKAAFDELRNALNKRKKQ----LLEDLEEQKENKLKVLEQQLESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777654332 234444455566666666666666655554
No 356
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.41 E-value=7e+02 Score=28.94 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHH
Q 005010 355 AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEM 434 (719)
Q Consensus 355 ~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~ 434 (719)
.++.++.++..+..+|+.++.+.+.|+...+++-.++... +..+ + ..+..+..+|..+++++....+.|.-
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a-v~~~-----~---~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA-VQSE-----T---QELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHhh-----h---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666555555555555554221 1111 1 11245566666666666666666666
Q ss_pred HHHH
Q 005010 435 RLEE 438 (719)
Q Consensus 435 e~e~ 438 (719)
.+..
T Consensus 138 ~l~~ 141 (472)
T TIGR03752 138 RLAG 141 (472)
T ss_pred HHhh
Confidence 6543
No 357
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=21.21 E-value=6.1e+02 Score=26.22 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHH
Q 005010 599 EIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQD 678 (719)
Q Consensus 599 ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~ 678 (719)
+|...|++|+..+=+....+..+...+.+...+-.||+.--.-|+.-.+.-...|+.|.+.+.-.++-+.+=|.|.--|.
T Consensus 115 ~i~k~RKkLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~lv~AQl~Yh 194 (215)
T cd07593 115 EYHSARKKLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESSEDVEARMVAIKESEADQYRDLTDLLDAELDYH 194 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433444466889999999999999999999999999999999888888887754443
No 358
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.17 E-value=1.9e+02 Score=23.76 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=11.2
Q ss_pred hhcHHHHHHHHHHHHHHHH
Q 005010 457 SSFPEDMSAMQRQLSKYKE 475 (719)
Q Consensus 457 ssl~~~i~~Lk~Ev~R~Ke 475 (719)
.-+..||..|+.|+.|+|.
T Consensus 28 ~El~eRIalLq~EIeRlkA 46 (65)
T COG5509 28 AELEERIALLQAEIERLKA 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666654
No 359
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.16 E-value=6.9e+02 Score=26.49 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 005010 204 NLQSEVKNLRLALMDL 219 (719)
Q Consensus 204 ~L~~E~~~Lq~~~~~L 219 (719)
.|..++.++|.....|
T Consensus 54 ~L~~e~~s~Q~~~~~L 69 (247)
T COG3879 54 DLVKELRSLQKKVNTL 69 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555555
No 360
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.89 E-value=5.6e+02 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=8.9
Q ss_pred hhHHHHhhHHHHHHHhHHH
Q 005010 412 DSKIADLGIEIQKQIDEKN 430 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere 430 (719)
+..|-+||..-.+++..||
T Consensus 45 r~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 45 RQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 361
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.87 E-value=7.8e+02 Score=28.04 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHhhh-h--hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 207 SEVKNLRLALMDLHLKHKSLTRELQSRQ-D--IDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 207 ~E~~~Lq~~~~~L~~k~k~ls~e~~~l~-d--~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
.+-..++..++.|+.+...++.++.... + .......+.+.|+.++..+...+..++.++..+-..
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666666666665421 1 233456677777777777777777777766555433
No 362
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.80 E-value=5.3e+02 Score=21.96 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHHhh
Q 005010 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSR 233 (719)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l 233 (719)
.|+.|+..|+.....|...+..+..+...+
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555444444443333333333333
No 363
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.76 E-value=3.6e+02 Score=31.79 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005010 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLL 653 (719)
Q Consensus 595 ~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll 653 (719)
.+..+|++++.+.+.. +..+-.++.|..+|..+||..--+++++-++|.-.|
T Consensus 104 el~seI~~~n~kiEel-------k~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEEL-------KRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHHhHHHHHHHHHHHH-------HHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Confidence 3445666666666654 445666788999999999999999999988887554
No 364
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.72 E-value=6.1e+02 Score=22.66 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHH---HHhHHHHHHHHHHHHhhHhhHHHHHHH
Q 005010 631 YLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDAL---LMDKHMMESEIQQANASLNFFDMKAAR 707 (719)
Q Consensus 631 l~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l---~~ek~~l~~~~~~~~~~~e~~~~~~~~ 707 (719)
+-+|++.+..-|.=+..-|..--....+.++....+-..--.-++.|..+ ....+.++.++..+...+..+..-..+
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544444333333333444444 344555666999999999999999999
Q ss_pred HHhhhhh
Q 005010 708 IENQVCL 714 (719)
Q Consensus 708 ~e~~~~~ 714 (719)
||.+.+-
T Consensus 92 LE~k~k~ 98 (99)
T PF10046_consen 92 LESKFKK 98 (99)
T ss_pred HHHHhhc
Confidence 9988763
No 365
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=20.64 E-value=5.2e+02 Score=24.59 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAA 267 (719)
Q Consensus 209 ~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~ 267 (719)
+..++..+..+...+..+....-.++..+...+.++..+-.++..+..++...+.++..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555444444443333444444444444444444444444444433
No 366
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.62 E-value=3.3e+02 Score=24.64 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHH
Q 005010 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDM 645 (719)
Q Consensus 598 ~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edm 645 (719)
+|.+.|-.++=.....+..|+....+-++|.=.|-+|--++||-.|-+
T Consensus 56 EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 56 EEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 344444444444444455566677777889999999999999988765
No 367
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.60 E-value=9.2e+02 Score=24.66 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~ 345 (719)
+.++...+.+.+...+.-...-..+..+...+...+.++.....
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~ 76 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE 76 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888888888888888877776643
No 368
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.26 E-value=3.6e+02 Score=27.53 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=44.4
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQR----QLSKYKEAALDIHILRAD 486 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~Lk~----Ev~R~Ke~~~e~~~Lr~e 486 (719)
+.++++||..|.++..+-+.- ..-...+ ..+..||..|+.=...+...+++ .-..++....++..++.+
T Consensus 102 krELa~Le~~l~~~~~~~~~~------~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 102 KRELAELEEKLSKVEQAAESR------RSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQ 175 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------ccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 455555555555554433322 1111111 35667777777766666666652 113334455666667777
Q ss_pred hhhHHHHHHhhhhh
Q 005010 487 VLSLTNVLERKVKE 500 (719)
Q Consensus 487 ~~~l~~~l~~k~~e 500 (719)
|..|...|..+..+
T Consensus 176 V~~Le~~L~~k~~e 189 (195)
T PF12761_consen 176 VDGLESHLSSKKQE 189 (195)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777554333
Done!