Query 005010
Match_columns 719
No_of_seqs 153 out of 172
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:38:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.9 0.03 1E-06 56.0 36.4 52 212-263 11-62 (284)
2 1i84_S Smooth muscle myosin he 97.7 8.1E-05 2.8E-09 92.5 11.5 47 300-346 857-903 (1184)
3 1i84_S Smooth muscle myosin he 97.7 7.6E-05 2.6E-09 92.8 10.7 15 558-572 1148-1162(1184)
4 2v71_A Nuclear distribution pr 96.8 0.054 1.9E-06 52.9 17.5 109 353-476 2-110 (189)
5 3na7_A HP0958; flagellar bioge 95.4 2.1 7.3E-05 43.6 22.0 108 208-343 19-126 (256)
6 3na7_A HP0958; flagellar bioge 94.8 0.97 3.3E-05 46.2 17.2 76 302-377 34-113 (256)
7 2v71_A Nuclear distribution pr 93.9 5.2 0.00018 39.0 23.0 66 370-438 90-155 (189)
8 3vkg_A Dynein heavy chain, cyt 93.2 12 0.00043 50.7 26.9 84 306-394 2013-2096(3245)
9 3vkg_A Dynein heavy chain, cyt 93.1 9.7 0.00033 51.7 25.6 56 447-502 1899-1958(3245)
10 3o0z_A RHO-associated protein 92.6 5 0.00017 38.3 16.2 105 363-477 8-113 (168)
11 3i00_A HIP-I, huntingtin-inter 92.2 1.2 4E-05 40.5 10.9 105 321-433 15-119 (120)
12 3q8t_A Beclin-1; autophagy, AT 89.4 9.2 0.00032 33.1 13.6 79 625-703 17-95 (96)
13 2dfs_A Myosin-5A; myosin-V, in 87.3 7.5 0.00026 47.7 15.9 37 617-653 982-1018(1080)
14 2v4h_A NF-kappa-B essential mo 86.9 6.6 0.00022 34.7 10.9 86 557-651 20-108 (110)
15 2dfs_A Myosin-5A; myosin-V, in 84.9 20 0.00068 44.0 18.0 126 517-660 918-1043(1080)
16 2fxo_A Myosin heavy chain, car 84.2 24 0.00082 32.0 16.6 106 593-699 15-121 (129)
17 2fxo_A Myosin heavy chain, car 83.3 26 0.0009 31.7 16.1 113 206-341 12-124 (129)
18 2v66_B Nuclear distribution pr 80.4 31 0.0011 30.6 15.2 97 324-438 6-102 (111)
19 2v66_B Nuclear distribution pr 79.4 20 0.00069 31.8 11.1 56 412-476 2-57 (111)
20 3s4r_A Vimentin; alpha-helix, 79.0 16 0.00056 31.3 10.3 38 227-264 55-92 (93)
21 3tnu_A Keratin, type I cytoske 78.9 20 0.00068 32.6 11.5 44 656-699 86-129 (131)
22 3q8t_A Beclin-1; autophagy, AT 78.3 18 0.00063 31.2 10.4 45 302-346 6-50 (96)
23 3tnu_B Keratin, type II cytosk 78.3 22 0.00076 32.2 11.6 44 656-699 84-127 (129)
24 3ghg_A Fibrinogen alpha chain; 78.2 23 0.0008 39.3 13.5 66 303-368 113-190 (562)
25 3o0z_A RHO-associated protein 77.9 49 0.0017 31.5 19.1 72 559-632 67-138 (168)
26 2efr_A General control protein 77.2 49 0.0017 31.1 21.5 115 506-656 35-149 (155)
27 3ol1_A Vimentin; structural ge 76.5 23 0.00078 31.7 11.0 70 353-432 12-81 (119)
28 1uii_A Geminin; human, DNA rep 72.0 22 0.00076 29.8 8.7 52 311-381 29-80 (83)
29 3tnu_B Keratin, type II cytosk 71.5 23 0.00079 32.0 9.9 18 412-429 81-98 (129)
30 2jee_A YIIU; FTSZ, septum, coi 69.8 39 0.0013 28.3 9.8 62 591-666 13-74 (81)
31 2eqb_B RAB guanine nucleotide 69.4 24 0.00082 30.6 8.7 60 202-261 7-66 (97)
32 3hnw_A Uncharacterized protein 69.0 71 0.0024 29.3 13.0 62 208-269 69-130 (138)
33 3tnu_A Keratin, type I cytoske 68.2 22 0.00077 32.3 9.0 36 307-342 17-52 (131)
34 2v4h_A NF-kappa-B essential mo 68.1 64 0.0022 28.5 13.2 33 301-333 25-57 (110)
35 3oja_B Anopheles plasmodium-re 66.6 48 0.0016 37.2 13.4 26 631-656 507-532 (597)
36 3oja_B Anopheles plasmodium-re 65.5 41 0.0014 37.7 12.6 21 636-656 505-525 (597)
37 2zxx_A Geminin; coiled-coil, c 65.3 32 0.0011 28.7 8.3 58 312-381 18-75 (79)
38 2eqb_B RAB guanine nucleotide 64.8 24 0.00082 30.6 7.8 61 638-698 3-63 (97)
39 3ol1_A Vimentin; structural ge 64.7 75 0.0026 28.3 11.6 44 594-644 65-108 (119)
40 1ic2_A Tropomyosin alpha chain 63.6 59 0.002 26.9 10.0 64 205-268 11-74 (81)
41 3a7p_A Autophagy protein 16; c 62.4 51 0.0017 30.8 10.1 32 625-656 102-133 (152)
42 3jsv_C NF-kappa-B essential mo 61.8 37 0.0013 29.2 8.3 72 582-653 14-88 (94)
43 2jee_A YIIU; FTSZ, septum, coi 61.5 66 0.0022 26.9 9.6 57 208-264 21-77 (81)
44 1wt6_A Myotonin-protein kinase 60.3 60 0.0021 27.1 9.1 44 228-271 31-74 (81)
45 3m91_A Proteasome-associated A 59.7 21 0.00073 27.2 5.9 41 600-640 11-51 (51)
46 1deq_A Fibrinogen (alpha chain 57.3 1.7E+02 0.0058 31.3 14.3 44 302-345 115-158 (390)
47 3trt_A Vimentin; cytoskeleton, 55.5 39 0.0013 27.5 7.4 71 417-491 6-76 (77)
48 1go4_E MAD1 (mitotic arrest de 55.3 16 0.00056 31.8 5.2 57 321-377 19-91 (100)
49 2wvr_A Geminin; DNA replicatio 54.6 48 0.0016 32.3 8.7 54 312-384 99-152 (209)
50 1x79_B RAB GTPase binding effe 54.5 75 0.0026 28.2 9.4 67 361-433 6-72 (112)
51 1deq_A Fibrinogen (alpha chain 53.4 1.6E+02 0.0054 31.5 13.2 27 690-716 135-161 (390)
52 3cve_A Homer protein homolog 1 53.1 93 0.0032 25.4 9.6 66 589-668 5-70 (72)
53 3ghg_A Fibrinogen alpha chain; 52.6 2.5E+02 0.0085 31.3 15.0 39 302-340 48-86 (562)
54 3m91_A Proteasome-associated A 52.6 40 0.0014 25.7 6.3 40 208-254 10-49 (51)
55 3oja_A Leucine-rich immune mol 51.0 1.8E+02 0.0062 31.6 14.4 56 629-691 431-486 (487)
56 3i00_A HIP-I, huntingtin-inter 49.4 66 0.0023 28.9 8.4 34 405-438 39-79 (120)
57 1xaw_A Occludin; coiled-coil, 48.7 1.6E+02 0.0056 27.0 12.7 86 307-394 45-135 (140)
58 2akf_A Coronin-1A; coiled coil 48.0 26 0.00089 23.4 3.9 28 686-713 3-30 (32)
59 3cvf_A Homer-3, homer protein 47.8 1.2E+02 0.0041 25.2 9.4 56 214-269 20-75 (79)
60 2lw1_A ABC transporter ATP-bin 47.7 1.2E+02 0.0042 25.3 9.5 58 321-378 22-80 (89)
61 2e7s_A RAB guanine nucleotide 47.0 60 0.002 29.8 7.7 13 558-570 71-83 (135)
62 1jcd_A Major outer membrane li 46.6 75 0.0026 24.3 7.0 28 240-267 23-50 (52)
63 3cvf_A Homer-3, homer protein 45.8 1.2E+02 0.0042 25.1 8.8 66 589-668 11-76 (79)
64 3lbx_A Spectrin alpha chain, e 45.5 1.8E+02 0.0063 26.7 14.6 81 301-383 30-117 (161)
65 2xdj_A Uncharacterized protein 44.6 1.1E+02 0.0039 25.5 8.6 29 238-266 30-58 (83)
66 3a7p_A Autophagy protein 16; c 44.4 1.3E+02 0.0043 28.1 9.6 61 205-265 73-133 (152)
67 1wlq_A Geminin; coiled-coil; 2 44.4 1.4E+02 0.0047 25.0 8.8 47 312-377 22-68 (83)
68 3hnw_A Uncharacterized protein 43.8 1.9E+02 0.0066 26.4 14.2 58 208-265 76-133 (138)
69 3tul_A Cell invasion protein S 38.9 1.9E+02 0.0065 26.8 9.7 48 447-494 45-92 (158)
70 3mq7_A Bone marrow stromal ant 36.5 2E+02 0.0069 25.6 9.1 75 518-614 30-108 (121)
71 3swk_A Vimentin; cytoskeleton, 35.4 1.5E+02 0.0051 24.8 8.0 16 417-432 46-61 (86)
72 2e7s_A RAB guanine nucleotide 35.0 1.1E+02 0.0039 27.9 7.6 57 205-261 30-86 (135)
73 2ocy_A RAB guanine nucleotide 35.0 2.9E+02 0.0098 25.8 16.5 13 558-570 83-95 (154)
74 4emc_A Monopolin complex subun 34.6 1.3E+02 0.0046 28.9 8.4 60 40-100 22-82 (190)
75 3twe_A Alpha4H; unknown functi 34.4 52 0.0018 20.9 3.6 21 245-265 4-24 (27)
76 3bas_A Myosin heavy chain, str 34.2 2.1E+02 0.0071 24.0 10.9 21 592-612 15-35 (89)
77 1x79_B RAB GTPase binding effe 32.1 1.9E+02 0.0065 25.6 8.4 32 413-444 13-44 (112)
78 2no2_A HIP-I, huntingtin-inter 31.5 2.6E+02 0.009 24.4 13.7 54 588-641 44-97 (107)
79 1ci6_A Transcription factor AT 30.2 1.2E+02 0.0042 23.8 6.3 34 357-390 26-59 (63)
80 1m1j_A Fibrinogen alpha subuni 29.8 5.9E+02 0.02 27.9 14.8 67 302-368 113-191 (491)
81 2b9c_A Striated-muscle alpha t 29.7 3.4E+02 0.011 25.0 14.7 41 675-715 101-141 (147)
82 2efr_A General control protein 28.7 3.6E+02 0.012 25.1 21.8 33 406-438 98-130 (155)
83 3u1c_A Tropomyosin alpha-1 cha 28.6 2.8E+02 0.0095 23.8 13.8 21 241-261 50-70 (101)
84 3u59_A Tropomyosin beta chain; 28.5 2.8E+02 0.0095 23.7 12.3 44 301-344 10-53 (101)
85 2yy0_A C-MYC-binding protein; 28.1 82 0.0028 24.1 4.7 21 205-225 24-44 (53)
86 2oto_A M protein; helical coil 27.6 3.6E+02 0.012 24.7 10.2 30 204-233 26-55 (155)
87 1go4_E MAD1 (mitotic arrest de 27.2 2.5E+02 0.0086 24.3 8.1 20 417-436 72-91 (100)
88 3oja_A Leucine-rich immune mol 26.8 4.9E+02 0.017 28.0 12.8 26 679-704 446-471 (487)
89 1wlq_A Geminin; coiled-coil; 2 26.8 1.2E+02 0.0041 25.4 5.7 37 447-483 38-74 (83)
90 2w83_C C-JUN-amino-terminal ki 26.8 2.7E+02 0.0091 22.9 8.7 72 635-713 4-75 (77)
91 1g6u_A Domain swapped dimer; d 26.6 1.7E+02 0.0057 21.0 5.6 28 249-276 20-47 (48)
92 2w83_C C-JUN-amino-terminal ki 26.6 2.7E+02 0.0092 22.9 7.6 37 358-394 34-70 (77)
93 3f31_A Spectrin alpha chain, b 26.4 1.5E+02 0.0052 26.8 7.3 80 300-380 19-104 (149)
94 1wt6_A Myotonin-protein kinase 25.9 1.5E+02 0.0051 24.7 6.1 38 218-255 35-72 (81)
95 1ic2_A Tropomyosin alpha chain 25.3 2.8E+02 0.0095 22.7 10.1 49 215-263 28-76 (81)
96 1uii_A Geminin; human, DNA rep 24.8 1.2E+02 0.0042 25.3 5.4 34 447-480 46-79 (83)
97 2xdj_A Uncharacterized protein 24.2 3.1E+02 0.011 22.8 9.1 32 625-656 33-64 (83)
98 1p9i_A Cortexillin I/GCN4 hybr 23.6 61 0.0021 21.3 2.6 23 451-473 3-25 (31)
99 4dzn_A Coiled-coil peptide CC- 23.1 1.7E+02 0.0059 19.4 5.0 11 600-610 4-14 (33)
100 2ocy_A RAB guanine nucleotide 22.2 4.8E+02 0.016 24.3 18.0 54 207-260 44-97 (154)
101 3iox_A AGI/II, PA; alpha helix 22.2 6.9E+02 0.024 27.6 12.3 103 409-524 5-108 (497)
102 3v86_A De novo design helix; c 21.9 1.3E+02 0.0043 19.2 3.7 21 458-478 4-24 (27)
103 2zxx_A Geminin; coiled-coil, c 21.7 1.4E+02 0.0048 24.8 5.2 36 448-483 35-70 (79)
104 4g1a_A AQ-C16C19 peptide; heli 21.5 74 0.0025 21.0 2.7 26 61-86 2-27 (32)
105 1ci6_A Transcription factor AT 21.1 2.2E+02 0.0077 22.2 6.2 11 241-251 50-60 (63)
106 3ra3_A P1C; coiled coil domain 21.0 1.1E+02 0.0036 19.7 3.3 24 41-64 3-26 (28)
107 3s4r_A Vimentin; alpha-helix, 20.7 3.8E+02 0.013 22.6 11.9 71 579-658 11-81 (93)
108 3a7o_A Autophagy protein 16; c 20.5 2.5E+02 0.0085 22.8 6.1 42 594-635 14-55 (75)
109 4efa_G V-type proton ATPase su 20.5 2.8E+02 0.0095 24.7 7.4 48 547-609 10-57 (119)
110 3q0x_A Centriole protein; cent 20.4 3.5E+02 0.012 26.9 8.8 62 346-436 161-222 (228)
111 1gmj_A ATPase inhibitor; coile 20.4 2.3E+02 0.0078 23.8 6.2 14 299-312 19-32 (84)
112 3nmd_A CGMP dependent protein 20.3 2.7E+02 0.0091 22.7 6.4 29 241-269 39-67 (72)
113 3qne_A Seryl-tRNA synthetase, 20.2 3.5E+02 0.012 29.9 9.8 70 361-438 33-103 (485)
114 4e61_A Protein BIM1; EB1-like 20.1 4.4E+02 0.015 23.0 8.8 26 620-645 33-61 (106)
115 3cve_A Homer protein homolog 1 20.1 3.5E+02 0.012 22.0 10.0 41 228-268 28-68 (72)
116 1zxa_A CGMP-dependent protein 20.1 1.6E+02 0.0054 23.7 5.0 41 230-270 13-53 (67)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.86 E-value=0.03 Score=56.03 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (719)
Q Consensus 212 Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~r 263 (719)
+...++.+......+..++..+...+......+..+...+..+...+..+..
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333343333333333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.74 E-value=8.1e-05 Score=92.50 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005010 300 RDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS 346 (719)
Q Consensus 300 ~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~ 346 (719)
+++..++.++++++.-...-...+.++......+..+...++..+..
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~ 903 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA 903 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777766666667777777777777777777766553
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.71 E-value=7.6e-05 Score=92.76 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhh
Q 005010 558 KAWAHVHSLKSSLDE 572 (719)
Q Consensus 558 ~~~ae~~~Lk~~L~e 572 (719)
.++.+++.|+..|++
T Consensus 1148 ~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1148 DLSEELEALKTELED 1162 (1184)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777777777765
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.84 E-value=0.054 Score=52.92 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=79.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHH
Q 005010 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (719)
Q Consensus 353 S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L 432 (719)
.|.|....+.+.+|+..+.++...+..++.+.+.|...=+++....| ..+..++.++.+|...+.++..+.+.+
T Consensus 2 ~~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE------~eL~~~Ek~~~~L~~~~~~L~~E~e~~ 75 (189)
T 2v71_A 2 AMDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELE------AQLVQAEQRNRDLQADNQRLKYEVEAL 75 (189)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999775455532222 111224677777777888888888888
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 005010 433 EMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (719)
Q Consensus 433 ~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~ 476 (719)
+.++... ..|....+++|++++..|......++..
T Consensus 76 k~K~~~~---------~~e~~~~~~~Lq~el~~l~~~~~~l~~~ 110 (189)
T 2v71_A 76 KEKLEHQ---------YAQSYKQVSVLEDDLSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777543 4455557888888888888877777665
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.42 E-value=2.1 Score=43.62 Aligned_cols=108 Identities=11% Similarity=0.143 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccCCC
Q 005010 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGN 287 (719)
Q Consensus 208 E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~~~ 287 (719)
++..|+.....|......+..++..+.+.+.....++.++..++..+..++..++.++.+.+.......
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~----------- 87 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK----------- 87 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----------
Confidence 344444444444445555555555555555555666666666666666666666666666554321110
Q ss_pred CCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 288 KHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNT 343 (719)
Q Consensus 288 ~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~ 343 (719)
+.+++..|..+++-++. ++..+..+...+..+++.++..
T Consensus 88 ----------~~kE~~aL~kEie~~~~-------~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 88 ----------SERELRSLNIEEDIAKE-------RSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp ----------SSSHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 13447777777776654 3334444444444444444443
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.77 E-value=0.97 Score=46.18 Aligned_cols=76 Identities=13% Similarity=0.004 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----hhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV----KCLSSSKAFLSVKNQLEKSKSEVFKYQALF 377 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~----~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ 377 (719)
+.++..++..+......-..++..+..+...+..++..++..+... .-|.+...|..|..++..++..+..+...+
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666666666665532 557788999999998888776665555554
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.86 E-value=5.2 Score=38.98 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 370 VFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 370 ld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
+..++..+..|+..+..+...++++...++--+-+.|.+ ..-+.+++..+-++.-.--.|..++.+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~---~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT---IMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455566667777777766655555333333332 467778888887777777777777764
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.17 E-value=12 Score=50.66 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 306 ESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKD 385 (719)
Q Consensus 306 ~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~ 385 (719)
+.++.++.+-.+.-..+|.+.+.++..+..++..|+.++... +..-..|+.++...+..++++..++..|-.|+.
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~-----~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL-----IRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 334444444444445566677777777777777777765432 234468889999999999999999999999998
Q ss_pred HHHHHHHHH
Q 005010 386 NLAWRETEL 394 (719)
Q Consensus 386 ~~~~~~~E~ 394 (719)
-+..+..++
T Consensus 2088 RW~~~~~~l 2096 (3245)
T 3vkg_A 2088 RWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 776665444
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.06 E-value=9.7 Score=51.67 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhhcHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhH
Q 005010 447 EIIAEFRALVSSFPEDMSAMQR----QLSKYKEAALDIHILRADVLSLTNVLERKVKECE 502 (719)
Q Consensus 447 ~~~~E~r~Lissl~~~i~~Lk~----Ev~R~Ke~~~e~~~Lr~e~~~l~~~l~~k~~e~~ 502 (719)
..+.-+++|.....+++...+. =+.|+.++...+..|+.++......+..++.+..
T Consensus 1899 eli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~ 1958 (3245)
T 3vkg_A 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQAN 1958 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666776665555544333 3367778888888888888887777766655533
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.60 E-value=5 Score=38.29 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcC
Q 005010 363 LEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASRE 442 (719)
Q Consensus 363 ~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~ 442 (719)
+..|..+++++... |++|-++..+..+-.- | ........+.-+.+|...+..+.+.+++|.-++...-..
T Consensus 8 i~~LekQL~E~n~k---Lk~EsE~~~rlkK~~t---E----l~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 8 LSQLQKQLEEANDL---LRTESDTAVRLRKSHT---E----MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp --CTHHHHHHHHHH---HHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHhHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555 5676666655433321 2 111223346667777778888888888888777764444
Q ss_pred CCC-hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 005010 443 PGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477 (719)
Q Consensus 443 ~~k-~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~ 477 (719)
-+. +.....+-.++.-++.+|..|..++.+.|..-
T Consensus 78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 45556667788889999999999998888753
No 11
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=92.21 E-value=1.2 Score=40.48 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDL 400 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~ 400 (719)
..++.|..++..|..+++.++++-. +.-..|+.++..|+++++..+....+...+.+.++............
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q--------~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~ 86 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQ--------RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRED 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566677777777777777766532 23348999999999999999988777777777777665433222232
Q ss_pred HHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHH
Q 005010 401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIE 433 (719)
Q Consensus 401 ~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~ 433 (719)
..-+.+.....+.+....|..+.++..-|-.|+
T Consensus 87 ~~~~q~~~~e~E~kAqa~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 87 TEKAQRSLSEIERKAQANEQRYSKLKEKYSELV 119 (120)
T ss_dssp ---------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333445556666777777777777776654
No 12
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.44 E-value=9.2 Score=33.10 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHH
Q 005010 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDM 703 (719)
Q Consensus 625 ~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~ 703 (719)
+.++..|+.|+..+-.-.+.+..+-..+=.+....|.---+...+.-.-.--+..+..+.+.|+.++....++++++.+
T Consensus 17 ~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 17 ALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555555555555555555555555555555444444444444444557778888888888888888887754
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.30 E-value=7.5 Score=47.72 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=19.2
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005010 617 LSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLL 653 (719)
Q Consensus 617 l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll 653 (719)
+...+...+++.+.+-.+++.+...++++++.+.++.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555544
No 14
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.87 E-value=6.6 Score=34.73 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHhhhhhhhHHhhhhHHHHHHHHH
Q 005010 557 YKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQ---KLEAFKRDMVSLSDALKSKNEEIEAYLS 633 (719)
Q Consensus 557 ~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~---~l~~~~~~~~~l~~~l~~~~~e~~al~~ 633 (719)
+..+.++..|+.+|.. |.++-+.-+..+..+..+|+.++. .+...+..+.-....+.+-...=+-+-+
T Consensus 20 ~~~~~ei~~L~~~L~~---------AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~ 90 (110)
T 2v4h_A 20 HMASMQLEDLRQQLQQ---------AEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVE 90 (110)
T ss_dssp CSSCCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHh
Confidence 3345567777776543 333333444445555555555555 3334444444445555555666666777
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 005010 634 EIETIGQSYDDMQTQNQQ 651 (719)
Q Consensus 634 Eie~~gqA~edmq~Qn~~ 651 (719)
|++.+-.-++-+|.||..
T Consensus 91 eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 91 KKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777777777777777654
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.93 E-value=20 Score=43.97 Aligned_cols=126 Identities=18% Similarity=0.254 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhH
Q 005010 517 KLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAA 596 (719)
Q Consensus 517 ~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~ 596 (719)
.++....++...+.+|+.-|+-......+-.+. +...+.+...++..|+..+++......- .. ....++..+
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~--~~~~~~~~~~e~~~L~~~l~~le~~~~e--~~----~~~~~v~~L 989 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK--MNNLEITYSTETEKLRSDVERLRMSEEE--AK----NATNRVLSL 989 (1080)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHH--HH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHH
Confidence 344444455555555555444332211111111 1123345666777777766554331100 00 223455666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 005010 597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERD 660 (719)
Q Consensus 597 e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~d 660 (719)
+++++.|+..+.....+...+++.+.. +..+++ .-...|..+|..|=+|+.+..
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~~-------~~~~L~---~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWADK-------YKHETE---QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666654433333322222 222222 333445556666666555544
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.22 E-value=24 Score=31.99 Aligned_cols=106 Identities=13% Similarity=0.221 Sum_probs=48.2
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHh
Q 005010 593 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVR 672 (719)
Q Consensus 593 l~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~k 672 (719)
+...+.+|..|+.++.........|........++-+.|...+..-...+.+..+...+|..+-.+.+...--+ .+|+-
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el-~~rle 93 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM-NKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44445555555555555555445555544444555555555555544445555555555544444433322222 12211
Q ss_pred -hhhHHHHHHHhHHHHHHHHHHHHhhHh
Q 005010 673 -ARQLQDALLMDKHMMESEIQQANASLN 699 (719)
Q Consensus 673 -a~q~~~~l~~ek~~l~~~~~~~~~~~e 699 (719)
--.....|..+|..|+.++..+..+++
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223344444445555555544444
No 17
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.31 E-value=26 Score=31.73 Aligned_cols=113 Identities=9% Similarity=0.114 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccccC
Q 005010 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNL 285 (719)
Q Consensus 206 ~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e~~~~~g~~~~~~~~ 285 (719)
..++..+...+..|..+..........+.........++..|..+|..-+.-+..+.-++.+|........
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe--------- 82 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLE--------- 82 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------
Confidence 34566666666666666666666666777777777888888888888877777777777777764432221
Q ss_pred CCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 286 GNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQ 341 (719)
Q Consensus 286 ~~~~~~~~~~~~~~~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk 341 (719)
..+.++...+++....++.-..+-.++..+...|.++++.+.
T Consensus 83 --------------~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 83 --------------AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 115556666666555555544455555555555555555443
No 18
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.44 E-value=31 Score=30.64 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 005010 324 KGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDV 403 (719)
Q Consensus 324 e~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~ 403 (719)
.+|+..+..|..+++.++.++.. .+.+ .......++.++..|+..+..+...++++..+++--+=
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~------------~~~e---~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEH------------QYAQ---SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 45566667777777777766442 1111 12233334444445566666666666666555553333
Q ss_pred HhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 404 FRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 404 ~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
+.|.+ -.-+.++|..+-+....--.|..++.+
T Consensus 71 ~~R~t---~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 71 AKRAT---IVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 366778888887777666666666654
No 19
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.37 E-value=20 Score=31.84 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=43.8
Q ss_pred hhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 005010 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~ 476 (719)
+.+..+|.....++..++|.++.++.+...+. -..+++|++++..|......|+..
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~---------~~~~~~Lq~El~~lr~~~~~l~~~ 57 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQS---------YKQVSVLEDDLSQTRAIKEQLHKY 57 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999998854433 347778888888888777666655
No 20
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.99 E-value=16 Score=31.32 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=19.4
Q ss_pred HHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 227 TRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264 (719)
Q Consensus 227 s~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rk 264 (719)
..++..++..+.....+..+|..+++.+..+++....|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444555555555555555555555444
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.85 E-value=20 Score=32.61 Aligned_cols=44 Identities=25% Similarity=0.141 Sum_probs=29.9
Q ss_pred hhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHh
Q 005010 656 ITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699 (719)
Q Consensus 656 l~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e 699 (719)
|...+....++-.+-....+-|..|+.=|-.|+.+|.+-...+|
T Consensus 86 i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLLE 129 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence 33445555555556666667788888888889988887665543
No 22
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=78.29 E-value=18 Score=31.19 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS 346 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~ 346 (719)
.+.+..++..++.--+.-+.+|.++..+...+-.++..++.+...
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~ 50 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAER 50 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 567788888888888888899999999999999999888888663
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.27 E-value=22 Score=32.15 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=29.8
Q ss_pred hhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHh
Q 005010 656 ITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699 (719)
Q Consensus 656 l~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e 699 (719)
|...+....++-.+-....+-|..|+.=|-.|+.++.+-...+|
T Consensus 84 i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 84 LAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLLE 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence 33445555555556666667788888888889988887665543
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.16 E-value=23 Score=39.30 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------cchhhhcChhHHHHHHHHHHHHH
Q 005010 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK------------SVKCLSSSKAFLSVKNQLEKSKS 368 (719)
Q Consensus 303 e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~------------~~~~I~~S~~yk~L~~q~~~lk~ 368 (719)
++|+..+..+++-.++.+..|..|+.-+.++..++++|.+++. ..+|-..-.-|..++.|+..+.+
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhh
Confidence 5788888888888888899999999999999999999998865 11334444578888888777554
No 25
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.93 E-value=49 Score=31.48 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHH
Q 005010 559 AWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYL 632 (719)
Q Consensus 559 ~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~ 632 (719)
+..++..|+..|+.-.. ....+.+.-++.+.|+..+..++..++..+....-+...|.+.+...+.+...+-
T Consensus 67 Leke~~~LQa~L~qEr~--~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 67 TDKDYYQLQAILEAERR--DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555555532111 1112333334555677777777777777777776666666666666665555544
No 26
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=77.19 E-value=49 Score=31.10 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=62.9
Q ss_pred hcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHH
Q 005010 506 ASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEA 585 (719)
Q Consensus 506 ~~~~~~~~~ik~Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~ 585 (719)
++......-|..|..++..+.+..+-|...-+-|. +.|-....++..|...|.+... | +.
T Consensus 35 ERae~aE~k~~eLEeeL~~v~~nlKsLE~seekas-------------qrEd~yEeqIk~L~~kLKEAE~--R---AE-- 94 (155)
T 2efr_A 35 ERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYS-------------QKEDKYEEEIKVLSDKLKEAET--R---AE-- 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH--H---HH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHH-------------HHHHHHHHHHHHHHHHHHHHHH--H---HH--
Confidence 33344456666777777766666555554444331 1333455666666665543221 1 11
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005010 586 EAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQI 656 (719)
Q Consensus 586 e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql 656 (719)
.+.+.+..++.+|.+|--.|... +..-..+..||+.|-..+-.|+.-|-+|-..|
T Consensus 95 --~AERsv~kLEk~id~lEd~L~~~--------------Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 95 --FAERSVTKLEKSIDDLEDELYAQ--------------KLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 22345555555555555555554 66667777777777666666666665554433
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.52 E-value=23 Score=31.75 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHH
Q 005010 353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (719)
Q Consensus 353 S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L 432 (719)
|..|..+..++..|+.+++.....-..|..+.++++....+|..|-|. ++.. -..+|.++..+|+.-|..
T Consensus 12 ~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~-E~~~---------r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE-EMLQ---------REEAENTLQSFRQDVDNA 81 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHH---------HHHHHHHHHHhhhcccHH
Confidence 456677777888888888888887777888888877776666655542 2221 134566777777666543
No 28
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=72.03 E-value=22 Score=29.84 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 311 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (719)
Q Consensus 311 E~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq 381 (719)
=.+.+|..|-.=|.+.-.+|..|..+++.| +.++..++.++++++.+++..|
T Consensus 29 YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l-------------------~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 29 YWKEVAEKRRKALYEALKENEKLHKEIEQK-------------------DNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999988887664 4455667778888888876554
No 29
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.54 E-value=23 Score=32.05 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=8.8
Q ss_pred hhHHHHhhHHHHHHHhHH
Q 005010 412 DSKIADLGIEIQKQIDEK 429 (719)
Q Consensus 412 ~~~i~~lE~~LarvR~er 429 (719)
...|..+|..|+++|.+-
T Consensus 81 q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 344455555555554443
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=69.79 E-value=39 Score=28.29 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=43.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005010 591 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKL 666 (719)
Q Consensus 591 ~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl 666 (719)
.||..+-..|.-|+..++.. ++...+|-.|.+.+..--+.+..+|.+|-++...-+++.-.|
T Consensus 13 ~KIq~avdtI~lLqmEieEL--------------KekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEEL--------------KEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777788888888887 556666677777777777777777777777766666555444
No 31
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.44 E-value=24 Score=30.56 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 005010 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEEC 261 (719)
Q Consensus 202 ~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~ 261 (719)
...+..++..|+..+.....+...+..++..-+......+.+...+..+||++++-|..-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeE 66 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 66 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777888888888888888888888888888888899999999999999999998763
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.95 E-value=71 Score=29.33 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 208 E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
|.-.++..+..|......+..++..+...+...+.++..+..++++++.++..+.+++.+|.
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555566666666666666666666666666554
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.16 E-value=22 Score=32.26 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005010 307 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQN 342 (719)
Q Consensus 307 ~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~ 342 (719)
..+++++..+..--..|...+.++..+...++.|+.
T Consensus 17 ~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~ 52 (131)
T 3tnu_A 17 TKTEELNREVATNSELVQSGKSEISELRRTMQNLEI 52 (131)
T ss_dssp ------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333
No 34
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.13 E-value=64 Score=28.48 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKV 333 (719)
Q Consensus 301 ~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L 333 (719)
.+.+|...+..+....+....+++++.++....
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~ 57 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQH 57 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888877887777765553
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.55 E-value=48 Score=37.17 Aligned_cols=26 Identities=4% Similarity=-0.119 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005010 631 YLSEIETIGQSYDDMQTQNQQLLQQI 656 (719)
Q Consensus 631 l~~Eie~~gqA~edmq~Qn~~ll~ql 656 (719)
+-.++..+.+-...+...+++..+++
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 44444444444444545555544444
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.52 E-value=41 Score=37.70 Aligned_cols=21 Identities=5% Similarity=0.327 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHh
Q 005010 636 ETIGQSYDDMQTQNQQLLQQI 656 (719)
Q Consensus 636 e~~gqA~edmq~Qn~~ll~ql 656 (719)
+.+++.+..+++.++.+...+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~ 525 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRET 525 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHH
Confidence 445555555544444444333
No 37
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=65.28 E-value=32 Score=28.71 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381 (719)
Q Consensus 312 ~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq 381 (719)
.+.+|..|-.=|.+.-.+|..|-.+++.++..+. .|+.+...|+..+++.+.+++.|+
T Consensus 18 Wk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~------------~LkeEN~~L~el~~~~~~laevl~ 75 (79)
T 2zxx_A 18 WKEVAEQRRKALYEALKENEKLHKEIEQKDSEIA------------RLRKENKDLAEVAEHVQYMAEVIE 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999988887753 566666666666666666654443
No 38
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.82 E-value=24 Score=30.56 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=43.1
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhH
Q 005010 638 IGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASL 698 (719)
Q Consensus 638 ~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~ 698 (719)
+|+.|+.+.++-.+|-.++...|....+|+.+-......-..+-.++..++.++-.+.+++
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777777777777777777777776666554
No 39
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.67 E-value=75 Score=28.30 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHH
Q 005010 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDD 644 (719)
Q Consensus 594 ~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~ed 644 (719)
..+|.+|..|++-++...-.-..|.. ..++|..||.-+-+-|+.
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~-------~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLER-------KVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 46678888888888876544444444 456667777777666653
No 40
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.61 E-value=59 Score=26.87 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~l 268 (719)
|..+..+....+..+..+.+............+.....++..|.++++.+...|..+..+|...
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555556777777777777777777776666443
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=62.37 E-value=51 Score=30.82 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005010 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQI 656 (719)
Q Consensus 625 ~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql 656 (719)
..|..+|--+...+-+....++..|..||+.+
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666666666666544
No 42
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.83 E-value=37 Score=29.20 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005010 582 AIEAEAISQQRLAAAEAEIADMRQ---KLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLL 653 (719)
Q Consensus 582 ~~e~e~~~~~kl~~~e~ei~~Lr~---~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll 653 (719)
+.++-+.-|..|....++|+.++. .+...+..+.-....+.+-.+.=+-+-+|.+.+-.-++-+|.||.+|-
T Consensus 14 aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 14 AEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444445544442 222232333333333444444444455555555555555555554443
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=61.52 E-value=66 Score=26.92 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264 (719)
Q Consensus 208 E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rk 264 (719)
.+.-||-.+..|..++..+..+.+.++........++.+|+.+...-+.++...-.|
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555555555555555555666666666666655555554433
No 44
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=60.31 E-value=60 Score=27.07 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=21.5
Q ss_pred HHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005010 228 RELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (719)
Q Consensus 228 ~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~e 271 (719)
.++...+...-..++++++-.....++..++...+.++..|+.+
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333333333344455555555555555555555555555544
No 45
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=59.70 E-value=21 Score=27.23 Aligned_cols=41 Identities=20% Similarity=0.426 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHH
Q 005010 600 IADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQ 640 (719)
Q Consensus 600 i~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gq 640 (719)
+.+|+..+...-.....|...|....++...|..+||.+++
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~Laq 51 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 51 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33445555555555555666777778888888888888874
No 46
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.27 E-value=1.7e+02 Score=31.27 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK 345 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~ 345 (719)
.++|+..+.-++.-....+..|.-|+..+.++.-++.+|.+++.
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888889999999999999999999999999999999984
No 47
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=55.46 E-value=39 Score=27.52 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=0.0
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005010 417 DLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT 491 (719)
Q Consensus 417 ~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~ 491 (719)
+|-.-|+.||.+||.+-.+.-.-...-= ..-+.++...+..-...+...+.|+..++-. +..|..++++++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y-~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~---iq~L~~el~slk 76 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWY-KSKFADLSEAANRNNDALRQAKQESTEYRRQ---VQSLTMEVDALK 76 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhc
No 48
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.30 E-value=16 Score=31.79 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-----------hhhhc--Ch---hHHHHHHHHHHHHHHHHHHHHHH
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKSV-----------KCLSS--SK---AFLSVKNQLEKSKSEVFKYQALF 377 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~~-----------~~I~~--S~---~yk~L~~q~~~lk~eld~~r~~~ 377 (719)
.+++.|..++..|.+++..|.++|..- .||+= +| .|+..+..+..|.++++++|..+
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888888888888887641 23321 22 55555555555555555555544
No 49
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=54.58 E-value=48 Score=32.34 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEK 384 (719)
Q Consensus 312 ~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er 384 (719)
++.+|..|-.=|.+...||..|..+++. |+.++..|+.++++++.+++.+|.-.
T Consensus 99 Wk~lAE~RR~AL~eaLeEN~~Lh~~ie~-------------------l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 99 WKEVAEKRRKALYEALKENEKLHKEIEQ-------------------KDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999998888765 44556667777777777766555433
No 50
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=54.46 E-value=75 Score=28.22 Aligned_cols=67 Identities=10% Similarity=0.005 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHH
Q 005010 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIE 433 (719)
Q Consensus 361 ~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~ 433 (719)
+|...|..++.+++..++++..+|+.+.... . +..+-....+..+..++...|..|.-++..+-...
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w---~---~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q 72 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFI---K---QSSEDSSHQISALVLRAQASEILLEELQQGLSQAK 72 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666666665554442 1 11122222223445555555555555555444443
No 51
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.38 E-value=1.6e+02 Score=31.53 Aligned_cols=27 Identities=11% Similarity=0.005 Sum_probs=22.4
Q ss_pred HHHHHHhhHhhHHHHHHHHHhhhhhhc
Q 005010 690 EIQQANASLNFFDMKAARIENQVCLFG 716 (719)
Q Consensus 690 ~~~~~~~~~e~~~~~~~~~e~~~~~~~ 716 (719)
.++.|+..|+.|..+|.|||-....|.
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id~c~ 161 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDIDIKI 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888999999999998887764
No 52
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=53.12 E-value=93 Score=25.44 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=40.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 005010 589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 668 (719)
Q Consensus 589 ~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~ 668 (719)
+.+||.++|....+|..++..+ +..|...+.+-+.+-.|+-.+ .++-.-+|++|.+--+-..||..
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~l-------e~~Le~s~~~q~~~~~Elk~~-------~e~Ld~KI~eL~elrq~LakL~~ 70 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEM-------EQRLEKSQSEQDAFRSNLKTL-------LEILDGKIFELTELRDNLAKLLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHhcc
Confidence 4567777777776666666554 333344455555555555544 44455678888887777777653
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.65 E-value=2.5e+02 Score=31.31 Aligned_cols=39 Identities=15% Similarity=0.025 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNL 340 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~L 340 (719)
-+.|+..+.+.-.=..+|+.+|...-++++...+.+...
T Consensus 48 GCrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy 86 (562)
T 3ghg_A 48 GCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSL 86 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHH
Confidence 477887777777777777777666666665555555444
No 54
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=52.63 E-value=40 Score=25.74 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHH
Q 005010 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESA 254 (719)
Q Consensus 208 E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~ 254 (719)
....|+..+..|-+++..|..-+... +.+|..|+.+++.+
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~A-------R~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEA-------RQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 34567777888877777777777777 55555555555543
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.97 E-value=1.8e+02 Score=31.55 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHH
Q 005010 629 EAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEI 691 (719)
Q Consensus 629 ~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~ 691 (719)
+-...+++.++...+.+.++|.|+-..+.+ +.-.=.++++.|..+-.-++.|+.|+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 431 NNAIRDWDMYQHKETQLAEENARLKKLNGE-------ADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhhHHHHHHHHhhhhhhhhhh-------hhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 334444455555555555555555544444 33344567788888888888887764
No 56
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=49.43 E-value=66 Score=28.89 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=19.8
Q ss_pred hhhhhhhhhHHHHhhHHHHHHHhH-------HHHHHHHHHH
Q 005010 405 RRSSAVTDSKIADLGIEIQKQIDE-------KNRIEMRLEE 438 (719)
Q Consensus 405 ~~~~~~~~~~i~~lE~~LarvR~e-------re~L~~e~e~ 438 (719)
++.+..++.+|.+|+.+|+.-|+. .+.|+.+++.
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344566777777777776655 4445555554
No 57
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=48.69 E-value=1.6e+02 Score=27.03 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 005010 307 SVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSE-----VFKYQALFEKLQ 381 (719)
Q Consensus 307 ~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~e-----ld~~r~~~ekLq 381 (719)
.+....+..-+.-..|-..|+.++..+.+++..|-..|.++. ..|+.|+.+-+++..++.. .-+-+..++-|.
T Consensus 45 eqR~rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~--~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~ 122 (140)
T 1xaw_A 45 QQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDYR--EESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLK 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--TTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 356677888888888888999999999999999998888652 5688888777777766432 344444555566
Q ss_pred HHHHHHHHHHHHH
Q 005010 382 VEKDNLAWRETEL 394 (719)
Q Consensus 382 ~er~~~~~~~~E~ 394 (719)
+....+.+.|.++
T Consensus 123 ~KLsHIK~lI~~Y 135 (140)
T 1xaw_A 123 SKLSHIKKMVGDY 135 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 6655555554443
No 58
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=47.95 E-value=26 Score=23.45 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhHhhHHHHHHHHHhhhh
Q 005010 686 MMESEIQQANASLNFFDMKAARIENQVC 713 (719)
Q Consensus 686 ~l~~~~~~~~~~~e~~~~~~~~~e~~~~ 713 (719)
.|+..+..+++-+..+...+.||||...
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788899999999999999999999753
No 59
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=47.84 E-value=1.2e+02 Score=25.21 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 214 LALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 214 ~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
..+..|..+-..+-..+...+......+++++.+-+.|+---.+|-..+..|++|-
T Consensus 20 ~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 20 TRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 33333333444444445555555555678888888888888888888888777764
No 60
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.66 E-value=1.2e+02 Score=25.30 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhh-cChhHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLS-SSKAFLSVKNQLEKSKSEVFKYQALFE 378 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~-~S~~yk~L~~q~~~lk~eld~~r~~~e 378 (719)
.||+.|-..+..|-.++..|...+.|+++-. ....+..|..++..+..+++.+-..-+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888999999999999999999986543 334556677777777777666655543
No 61
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.02 E-value=60 Score=29.79 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhh
Q 005010 558 KAWAHVHSLKSSL 570 (719)
Q Consensus 558 ~~~ae~~~Lk~~L 570 (719)
++..|+++|-.+|
T Consensus 71 ~ie~ElE~LTasL 83 (135)
T 2e7s_A 71 KLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4666777777766
No 62
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=46.57 E-value=75 Score=24.31 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 240 DKAKLNRLKGELESAVKELEECNCKLAA 267 (719)
Q Consensus 240 ~~~e~~~L~~eLe~~~~elek~~rkL~~ 267 (719)
...++..|...+..++.|-.++..||+.
T Consensus 23 LssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 23 ASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3566666777777888888888888764
No 63
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=45.84 E-value=1.2e+02 Score=25.13 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=40.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 005010 589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 668 (719)
Q Consensus 589 ~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~ 668 (719)
+.+||.++|....+|..++..+ +..|...+.+-+.+-.|+-.+ .++-.-+|++|.+--+-..||..
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~l-------e~~Le~s~~~q~~~~~Elk~l-------~e~Ld~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAM-------ERSLEEARAERERARAEVGRA-------AQLLDVSLFELSELREGLARLAE 76 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHhcc
Confidence 4466777776666666666554 333333455555555555444 44555688888888887777764
No 64
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=45.45 E-value=1.8e+02 Score=26.68 Aligned_cols=81 Identities=7% Similarity=0.031 Sum_probs=52.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------chhhhcChhHHHHHHHHHHHHHHHHHH
Q 005010 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS-------VKCLSSSKAFLSVKNQLEKSKSEVFKY 373 (719)
Q Consensus 301 ~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~-------~~~I~~S~~yk~L~~q~~~lk~eld~~ 373 (719)
....+......+...+..|...|+... ........+..+..=+.. .+| .....-..+..++..+.+++...
T Consensus 30 r~~~l~~rw~~L~~~a~~R~~~Le~s~-~lq~F~~d~~el~~Wi~ek~~~a~~~~~-~d~~~v~~ll~kH~afe~El~a~ 107 (161)
T 3lbx_A 30 RRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTK 107 (161)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCCc-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 377888999999999999999999987 677777777776544332 122 22233334555555566666555
Q ss_pred HHHHHHHHHH
Q 005010 374 QALFEKLQVE 383 (719)
Q Consensus 374 r~~~ekLq~e 383 (719)
...++.+...
T Consensus 108 ~~~~~~l~~~ 117 (161)
T 3lbx_A 108 SRLMSELEKT 117 (161)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 65
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.62 E-value=1.1e+02 Score=25.51 Aligned_cols=29 Identities=10% Similarity=0.361 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 238 AKDKAKLNRLKGELESAVKELEECNCKLA 266 (719)
Q Consensus 238 ~~~~~e~~~L~~eLe~~~~elek~~rkL~ 266 (719)
...+.+|.+|.|++|...+++..+.++-.
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33389999999999999999999877553
No 66
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=44.42 E-value=1.3e+02 Score=28.14 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL 265 (719)
|..++..|+..+..|....+.-..-+..++|.+...+.+...+.+.+..++.|...+-.|+
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666655555555555667777777777777777777777777776666555
No 67
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=44.42 E-value=1.4e+02 Score=25.05 Aligned_cols=47 Identities=9% Similarity=0.059 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 005010 312 LMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALF 377 (719)
Q Consensus 312 ~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ 377 (719)
.+.+|..|-.-|.+..++|..|.+.++.++. ++..++.++.+++.++
T Consensus 22 Wk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~e-------------------Ei~~Lk~en~~L~elA 68 (83)
T 1wlq_A 22 WKEVAEQRRKALYEALKENEKLHKEIEQKDS-------------------EIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH
Confidence 4778999999999999999988888776544 4555566666666664
No 68
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.77 E-value=1.9e+02 Score=26.39 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (719)
Q Consensus 208 E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL 265 (719)
++..|+..+..+......|--++-.++-.......++.+|..++..++-++-+.+..+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333333334444444444444444444444444444444333
No 69
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=38.89 E-value=1.9e+02 Score=26.77 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005010 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVL 494 (719)
Q Consensus 447 ~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~Lr~e~~~l~~~l 494 (719)
....||...+++-++-+..++..+.+|..+.+.++.|...+.-+...+
T Consensus 45 qlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 45 QVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 344578888888999999999999999998888888776655444433
No 70
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.48 E-value=2e+02 Score=25.57 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH----HHHHHhhhhhhcHHHHHHHHHHHHHHHHHHH
Q 005010 518 LQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAH----VHSLKSSLDEQSLELRVKTAIEAEAISQQRL 593 (719)
Q Consensus 518 Lk~~l~ka~~~~~elkl~ldmy~~~~~d~rd~~~~~~~E~~~~ae----~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl 593 (719)
|..++..+++ .|.+..-...+=.+-++.++++=.+.+++ +++|+- .++.++ ++|
T Consensus 30 Lq~qLTqAQe------~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqg---------EI~~Ln-------q~L 87 (121)
T 3mq7_A 30 LQQELTEAQK------GFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEG---------EITTLN-------HKL 87 (121)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-------HHH
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-------HHH
Q ss_pred HhHHHHHHHHHHHHHHHHhhh
Q 005010 594 AAAEAEIADMRQKLEAFKRDM 614 (719)
Q Consensus 594 ~~~e~ei~~Lr~~l~~~~~~~ 614 (719)
..+.+++++||.......-.+
T Consensus 88 q~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 88 QDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchhhhhHh
No 71
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=35.38 E-value=1.5e+02 Score=24.85 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=8.0
Q ss_pred HhhHHHHHHHhHHHHH
Q 005010 417 DLGIEIQKQIDEKNRI 432 (719)
Q Consensus 417 ~lE~~LarvR~ere~L 432 (719)
..|.++.-+|+.-|.+
T Consensus 46 ~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 46 EAENTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhhHHHH
Confidence 3455555555555543
No 72
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.04 E-value=1.1e+02 Score=27.93 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 005010 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEEC 261 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~ 261 (719)
+..+...|.+.+..+..+...+..++..-+......+.+...+..+||++++-|..-
T Consensus 30 l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeE 86 (135)
T 2e7s_A 30 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 86 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666677777777788888888888888999999999999999999999874
No 73
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.95 E-value=2.9e+02 Score=25.83 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhh
Q 005010 558 KAWAHVHSLKSSL 570 (719)
Q Consensus 558 ~~~ae~~~Lk~~L 570 (719)
++..|+++|-.+|
T Consensus 83 ~ie~ElEeLTasL 95 (154)
T 2ocy_A 83 KLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4666777777766
No 74
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.55 E-value=1.3e+02 Score=28.94 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH-HHHhh
Q 005010 40 TAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITD-LESCS 100 (719)
Q Consensus 40 ~~vLqfQn~kL~rqLe~~kre~~~Le~rie~Le~rq~~~d~~L~~Vnr~W~QL~dd-i~lL~ 100 (719)
..-|+.+|..|.++++.+..++..|..++..++.....+++.+..-..- -+++.| +..|.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~-i~i~~DL~e~LT 82 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAEN-SEVIKDLYEYLC 82 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh-hhHHHHHHHHcc
Confidence 3467889999999999999999999999999999998888877643333 334444 44443
No 75
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.41 E-value=52 Score=20.94 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005010 245 NRLKGELESAVKELEECNCKL 265 (719)
Q Consensus 245 ~~L~~eLe~~~~elek~~rkL 265 (719)
.+|-.+|++++..|-+.++||
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356778999999999999887
No 76
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=34.20 E-value=2.1e+02 Score=24.01 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=13.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHh
Q 005010 592 RLAAAEAEIADMRQKLEAFKR 612 (719)
Q Consensus 592 kl~~~e~ei~~Lr~~l~~~~~ 612 (719)
.|...+.++..|+..+.....
T Consensus 15 Em~~~eeel~~lke~l~k~e~ 35 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTER 35 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777766666533
No 77
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=32.13 E-value=1.9e+02 Score=25.58 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=21.2
Q ss_pred hHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCC
Q 005010 413 SKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (719)
Q Consensus 413 ~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~ 444 (719)
....++..+|.+.+.+|.+|...+.+.+++..
T Consensus 13 ~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k 44 (112)
T 1x79_B 13 LMLRQANDQLEKTMKDKQELEDFIKQSSEDSS 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666777777888888777666554443
No 78
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=31.53 E-value=2.6e+02 Score=24.37 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=39.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHh
Q 005010 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQS 641 (719)
Q Consensus 588 ~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA 641 (719)
....++...-..++.|+..|.....++..+...+....++...+.+.++.+..-
T Consensus 44 ~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~E 97 (107)
T 2no2_A 44 QGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666677888888888888888888887777777777777766555443
No 79
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.19 E-value=1.2e+02 Score=23.76 Aligned_cols=34 Identities=9% Similarity=-0.035 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 357 LSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWR 390 (719)
Q Consensus 357 k~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~ 390 (719)
..|..++..|+.+++.++..+..|+.|...+..-
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555556666666666666666665544433
No 80
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=29.78 E-value=5.9e+02 Score=27.88 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------cchhhhcChhHHHHHHHHHHHHH
Q 005010 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK------------SVKCLSSSKAFLSVKNQLEKSKS 368 (719)
Q Consensus 302 ~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~------------~~~~I~~S~~yk~L~~q~~~lk~ 368 (719)
.++|+..+.-++.-.+....-|.-|+.-+.++.-++.+|..++. ..+|...-..|-.++.|+..+.+
T Consensus 113 S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqLeQv~a 191 (491)
T 1m1j_A 113 STELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQASS 191 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHHHHhhc
Confidence 35666667777777777788888888889999999999888765 12555556788899998888533
No 81
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=29.67 E-value=3.4e+02 Score=25.03 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=36.3
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhhhh
Q 005010 675 QLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQVCLF 715 (719)
Q Consensus 675 q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~~~ 715 (719)
..+..|..+...+...++.+..+-+...+.-...|++++.+
T Consensus 101 ~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 101 GKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 44558888999999999999999999999999999999875
No 82
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=28.71 E-value=3.6e+02 Score=25.12 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=21.9
Q ss_pred hhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 406 RSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 406 ~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
+....++..|..+|+.|..-...|..+.-++.+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777777777777666666666654
No 83
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.64 E-value=2.8e+02 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEEC 261 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~ 261 (719)
..++..+.++++.+...|..+
T Consensus 50 ~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 50 EKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 84
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=28.50 E-value=2.8e+02 Score=23.69 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005010 301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL 344 (719)
Q Consensus 301 ~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l 344 (719)
.+..|..+.+.+.+-|..--.++..+......+-.++..|+-++
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46677777777777777777777777777777776666665553
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.12 E-value=82 Score=24.09 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHH
Q 005010 205 LQSEVKNLRLALMDLHLKHKS 225 (719)
Q Consensus 205 L~~E~~~Lq~~~~~L~~k~k~ 225 (719)
|..|+..|+..+..|...|..
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333
No 86
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=27.57 E-value=3.6e+02 Score=24.71 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHHhh
Q 005010 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSR 233 (719)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l 233 (719)
.+..++..|+..+..+......+......+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL 55 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEEL 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455555555554444333333333333
No 87
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.24 E-value=2.5e+02 Score=24.33 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=10.2
Q ss_pred HhhHHHHHHHhHHHHHHHHH
Q 005010 417 DLGIEIQKQIDEKNRIEMRL 436 (719)
Q Consensus 417 ~lE~~LarvR~ere~L~~e~ 436 (719)
+.+.++.+++.+.+-|+..+
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.84 E-value=4.9e+02 Score=28.03 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=13.3
Q ss_pred HHHHhHHHHHHHHHHHHhhHhhHHHH
Q 005010 679 ALLMDKHMMESEIQQANASLNFFDMK 704 (719)
Q Consensus 679 ~l~~ek~~l~~~~~~~~~~~e~~~~~ 704 (719)
.++++++.++..+..+...++.-+.+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 446 QLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 44555555555555555555444333
No 89
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.79 E-value=1.2e+02 Score=25.41 Aligned_cols=37 Identities=5% Similarity=0.161 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHIL 483 (719)
Q Consensus 447 ~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~L 483 (719)
.-|..++..|+.+.++|..|+.++..+++-+..+.-|
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~l 74 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778888888888888888887765554443
No 90
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.77 E-value=2.7e+02 Score=22.94 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=43.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHhHhhhhHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHhhhh
Q 005010 635 IETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQVC 713 (719)
Q Consensus 635 ie~~gqA~edmq~Qn~~ll~ql~e~dd~n~kl~~E~~ka~q~~~~l~~ek~~l~~~~~~~~~~~e~~~~~~~~~e~~~~ 713 (719)
+...|.-+|.+=.+|..|+.---..+=.-.-|+ ....-|--|+++|..++..+.....++..+|..+|+..+
T Consensus 4 ~~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI-------~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 4 PEFMGREVENLILENTQLLETKNALNIVKNDLI-------AKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888999988864333221111111 134466778888888888888888888888888888765
No 91
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.61 E-value=1.7e+02 Score=21.01 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 005010 249 GELESAVKELEECNCKLAALRAERDVTK 276 (719)
Q Consensus 249 ~eLe~~~~elek~~rkL~~lk~e~~~~~ 276 (719)
++|..+..+|...++||+.+++.-++..
T Consensus 20 eelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566667777778888888887655543
No 92
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.56 E-value=2.7e+02 Score=22.91 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETEL 394 (719)
Q Consensus 358 ~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~ 394 (719)
.|=.++..|..+.+-++.++..++..++.+..+++|+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555556666655565555555555444
No 93
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=26.41 E-value=1.5e+02 Score=26.76 Aligned_cols=80 Identities=9% Similarity=0.029 Sum_probs=48.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhH------HHHHHHHHHHHHHHHHH
Q 005010 300 RDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAF------LSVKNQLEKSKSEVFKY 373 (719)
Q Consensus 300 ~~~e~L~~eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~y------k~L~~q~~~lk~eld~~ 373 (719)
.....+...+..+...+..|...|+.... .......+..+..=+..-..+..+..| ..+..++..+.+++...
T Consensus 19 ~r~~~l~~r~~~L~~~a~~R~~~Le~s~~-l~~F~~d~~el~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El~a~ 97 (149)
T 3f31_A 19 ERRQQVLDRYHRFKELSTLRRQKLEDSYR-FQFFQRDAEELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQAN 97 (149)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33678888899999999999999999874 777777777765444422122222233 23444444455555444
Q ss_pred HHHHHHH
Q 005010 374 QALFEKL 380 (719)
Q Consensus 374 r~~~ekL 380 (719)
..-++.+
T Consensus 98 ~~~l~~v 104 (149)
T 3f31_A 98 SGAIVKL 104 (149)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 94
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.89 E-value=1.5e+02 Score=24.69 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=16.7
Q ss_pred HHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHH
Q 005010 218 DLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAV 255 (719)
Q Consensus 218 ~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~ 255 (719)
.+.+.+..+..+++...-.......++..|+.++++++
T Consensus 35 ~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 35 AIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444442233333555555555555543
No 95
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.33 E-value=2.8e+02 Score=22.67 Aligned_cols=49 Identities=20% Similarity=0.183 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 215 ALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (719)
Q Consensus 215 ~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~r 263 (719)
.+............++..++-++...+.++......|.+++..|+.+++
T Consensus 28 ~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 28 DKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444455555555555555555555443
No 96
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.76 E-value=1.2e+02 Score=25.33 Aligned_cols=34 Identities=6% Similarity=0.157 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 005010 447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDI 480 (719)
Q Consensus 447 ~~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~ 480 (719)
.-|..++..|++++++|..|+.++..+++-+..+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888889999999999888888765443
No 97
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.25 E-value=3.1e+02 Score=22.82 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005010 625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQI 656 (719)
Q Consensus 625 ~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql 656 (719)
..|...|-+.||...--.+.|+++...+.++|
T Consensus 33 q~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 33 QSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555
No 98
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=23.60 E-value=61 Score=21.28 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=17.9
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHH
Q 005010 451 EFRALVSSFPEDMSAMQRQLSKY 473 (719)
Q Consensus 451 E~r~Lissl~~~i~~Lk~Ev~R~ 473 (719)
.+..|+.|+..+|.+|+..|..+
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999998876443
No 99
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.07 E-value=1.7e+02 Score=19.42 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 005010 600 IADMRQKLEAF 610 (719)
Q Consensus 600 i~~Lr~~l~~~ 610 (719)
|+.|.+.+.+.
T Consensus 4 iaalkqeiaal 14 (33)
T 4dzn_A 4 IAALKQEIAAL 14 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 100
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.22 E-value=4.8e+02 Score=24.29 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 005010 207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEE 260 (719)
Q Consensus 207 ~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek 260 (719)
.+...|.........+...+..++..-+......+.+...+..+||++.+-|..
T Consensus 44 ~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 44 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555566666677777777777766655
No 101
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=22.21 E-value=6.9e+02 Score=27.57 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 005010 409 AVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQL-SKYKEAALDIHILRADV 487 (719)
Q Consensus 409 ~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k~~~~~E~r~Lissl~~~i~~Lk~Ev-~R~Ke~~~e~~~Lr~e~ 487 (719)
+.+...++....+|+||.++...+.+..+.+.++.. .-|.++++-..+.+.+|..-+..- ..+.....++.+-.+++
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~--a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANN--AANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHhhhhhhHHhhhcchhHHHHHHHHHHHHHh
Q 005010 488 LSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQD 524 (719)
Q Consensus 488 ~~l~~~l~~k~~e~~~l~~~~~~~~~~ik~Lk~~l~k 524 (719)
-+....+..- ...-..+.+..+++.+
T Consensus 83 AeY~~kl~aY-----------e~~~~~~~k~lae~ek 108 (497)
T 3iox_A 83 ADYPVKLKAY-----------EDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHhh
No 102
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=21.95 E-value=1.3e+02 Score=19.22 Aligned_cols=21 Identities=5% Similarity=0.305 Sum_probs=15.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHH
Q 005010 458 SFPEDMSAMQRQLSKYKEAAL 478 (719)
Q Consensus 458 sl~~~i~~Lk~Ev~R~Ke~~~ 478 (719)
.|.++.+.|++||+-+|+...
T Consensus 4 qlkdevgelkgevralkdevk 24 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHh
Confidence 456778888888887776643
No 103
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.71 E-value=1.4e+02 Score=24.80 Aligned_cols=36 Identities=6% Similarity=0.155 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 448 IIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHIL 483 (719)
Q Consensus 448 ~~~E~r~Lissl~~~i~~Lk~Ev~R~Ke~~~e~~~L 483 (719)
-|..++.-|+.++++|..|+.+...|++.+....-|
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777777777665544443
No 104
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=21.50 E-value=74 Score=21.02 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHH
Q 005010 61 YSALENKFAQLKERQQPYDSTLKVVN 86 (719)
Q Consensus 61 ~~~Le~rie~Le~rq~~~d~~L~~Vn 86 (719)
+..|+.+|.-|+.+.+.++..+..+.
T Consensus 2 iaaleqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998877653
No 105
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.13 E-value=2.2e+02 Score=22.24 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 005010 241 KAKLNRLKGEL 251 (719)
Q Consensus 241 ~~e~~~L~~eL 251 (719)
+.++..|++-|
T Consensus 50 ~~E~~~Lk~ll 60 (63)
T 1ci6_A 50 AKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455454443
No 106
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.98 E-value=1.1e+02 Score=19.71 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 41 AVLQFQNQKLVQKLETQKVEYSAL 64 (719)
Q Consensus 41 ~vLqfQn~kL~rqLe~~kre~~~L 64 (719)
+.|.|.|.+|-+.+-.-+..++.|
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 468899999887766555555443
No 107
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.74 E-value=3.8e+02 Score=22.60 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 005010 579 VKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE 658 (719)
Q Consensus 579 vk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~ql~e 658 (719)
++.+|..-|.+--|.+.+|.+...|..++...... ....-...|.++|..+=.-.+++...|.++.-++..
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~---------~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ---------GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566667777777777777666554321 012234557777777777777777777777776654
No 108
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.52 E-value=2.5e+02 Score=22.76 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHHHHHHH
Q 005010 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI 635 (719)
Q Consensus 594 ~~~e~ei~~Lr~~l~~~~~~~~~l~~~l~~~~~e~~al~~Ei 635 (719)
......++.||..|....+.+..|++.++.+....+-|-.||
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEi 55 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDEL 55 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHH
No 109
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=20.50 E-value=2.8e+02 Score=24.71 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005010 547 RDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEA 609 (719)
Q Consensus 547 rd~~~~~~~E~~~~ae~~~Lk~~L~e~~~~~rvk~~~e~e~~~~~kl~~~e~ei~~Lr~~l~~ 609 (719)
--|-+|+++|+++..-|...|.. +-.|+|.|- ..++.||+..|.+-+.
T Consensus 10 ~GIQqLL~AEk~A~~iV~~ARk~-----k~~rLKqAK----------~EA~~EIe~yR~qkE~ 57 (119)
T 4efa_G 10 NGIATLLQAEKEAHEIVSKARKY-----RQDKLKQAK----------TDAAKEIDSYKIQKDK 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 35888999999999999988874 222455454 2556778877776555
No 110
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.42 E-value=3.5e+02 Score=26.90 Aligned_cols=62 Identities=5% Similarity=0.104 Sum_probs=0.0
Q ss_pred cchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHH
Q 005010 346 SVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQ 425 (719)
Q Consensus 346 ~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~Larv 425 (719)
+.+.|+ ..|...+..+++.+......+++.+.|++++..++.+.+ ..++.+
T Consensus 161 sde~Ik-----~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~------------------------~~~~~~ 211 (228)
T 3q0x_A 161 NDSVVK-----QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCR------------------------QQLAQL 211 (228)
T ss_dssp CHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHH
T ss_pred CHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHH
Q ss_pred HhHHHHHHHHH
Q 005010 426 IDEKNRIEMRL 436 (719)
Q Consensus 426 R~ere~L~~e~ 436 (719)
|..||.+..++
T Consensus 212 ~~~~~~~~~~~ 222 (228)
T 3q0x_A 212 REQYDKHLLEV 222 (228)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHhhhheee
No 111
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.37 E-value=2.3e+02 Score=23.82 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=6.3
Q ss_pred hhhhhhHHHHHHHH
Q 005010 299 QRDLRDMESVHKEL 312 (719)
Q Consensus 299 ~~~~e~L~~eleE~ 312 (719)
+..|-..++..|+.
T Consensus 19 ggaFgKrEaA~Ee~ 32 (84)
T 1gmj_A 19 GGAFGKREQAEEER 32 (84)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CCCcccHHHHhHHH
Confidence 33354455444443
No 112
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.28 E-value=2.7e+02 Score=22.71 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 241 KAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 241 ~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
+..|.+|..+|.+...++...+..|+.++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555555555554
No 113
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.25 E-value=3.5e+02 Score=29.89 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHH
Q 005010 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID-LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE 438 (719)
Q Consensus 361 ~q~~~lk~eld~~r~~~ekLq~er~~~~~~~~E~~~k~E-~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~ 438 (719)
+++-.+-.+.-.++..++.|+++++.+.+++.......+ ..++ ..++..+..++..+-.+...+..++..
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l--------~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDL--------IAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666667778888888887744322122 2222 344555555555555555555555554
No 114
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.14 E-value=4.4e+02 Score=23.03 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=17.1
Q ss_pred HhhhhHHHHHHHHH---HHHHHHHhHHHH
Q 005010 620 ALKSKNEEIEAYLS---EIETIGQSYDDM 645 (719)
Q Consensus 620 ~l~~~~~e~~al~~---Eie~~gqA~edm 645 (719)
.+...+.|-+=|++ .||.++|-..++
T Consensus 33 ~ve~lEkERDFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 33 TVSTLEIEREFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333556666665 788888887665
No 115
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.13 E-value=3.5e+02 Score=21.96 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 228 RELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (719)
Q Consensus 228 ~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~l 268 (719)
..+...+......+++++.+-+.|+---.+|-..+..|++|
T Consensus 28 ~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 28 QRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 33344444444457777777777777777777777777665
No 116
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.07 E-value=1.6e+02 Score=23.74 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=29.2
Q ss_pred HHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005010 230 LQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRA 270 (719)
Q Consensus 230 ~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk~ 270 (719)
.+.+...+......+.+|+..|+....++...++.|+++++
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556788888988999999999998888888763
Done!