Query 005010
Match_columns 719
No_of_seqs 153 out of 172
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 12:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005010.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005010hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 50.6 58 0.0042 26.1 12.0 66 204-269 32-98 (110)
2 d1ivsa1 a.2.7.3 (A:797-862) Va 45.3 36 0.0026 25.0 7.4 34 321-354 4-37 (66)
3 d1lrza1 a.2.7.4 (A:245-309) Me 44.7 36 0.0026 25.4 7.1 55 323-377 5-60 (65)
4 d1cxzb_ a.2.6.1 (B:) Protein k 35.2 63 0.0046 25.3 7.5 60 380-440 23-83 (86)
5 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 30.8 1.5E+02 0.011 25.1 12.2 64 202-265 44-107 (196)
6 d1seta1 a.2.7.1 (A:1-110) Sery 27.4 1.4E+02 0.01 23.6 9.8 57 599-655 36-93 (110)
7 d2ap3a1 a.24.27.1 (A:12-196) H 26.9 1.5E+02 0.011 23.8 16.1 176 308-488 9-185 (185)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 18.9 2E+02 0.015 22.5 9.6 77 317-393 21-104 (107)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 18.1 2.3E+02 0.017 22.8 12.1 18 308-325 85-102 (133)
10 d1vcsa1 a.47.2.1 (A:8-96) Vesi 18.0 2E+02 0.015 22.1 9.5 57 431-487 13-83 (89)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=50.58 E-value=58 Score=26.15 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhh-hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQD-IDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (719)
Q Consensus 204 ~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d-~~~~~~~e~~~L~~eLe~~~~elek~~rkL~~lk 269 (719)
.+-.+...++..++.|+++...++.++..... .......+.+.|+.++..+..++..+..++..+-
T Consensus 32 ~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888898988888888865432 2233456666666666666666666666554443
No 2
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=45.32 E-value=36 Score=25.01 Aligned_cols=34 Identities=12% Similarity=-0.098 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhcCh
Q 005010 321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSK 354 (719)
Q Consensus 321 ~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~ 354 (719)
.|+.+|..+...+..++..++..|.|+.||..-|
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP 37 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRKLASPGFREKAP 37 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCC
Confidence 5788999999999999999999999987776443
No 3
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=44.66 E-value=36 Score=25.40 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-cchhhhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 005010 323 LKGLHDGRIKVLQQLYNLQNTLK-SVKCLSSSKAFLSVKNQLEKSKSEVFKYQALF 377 (719)
Q Consensus 323 Le~l~~e~~~L~~e~~~Lk~~l~-~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ 377 (719)
|..|+.+...|..++..+..+|. +|+.=..-..+..|.+|+.....-++++..+.
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~li 60 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQ 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888889999999988887 55433333466677777777777777766664
No 4
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.17 E-value=63 Score=25.29 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHH-HHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHh
Q 005010 380 LQVEKDNLAWRE-TELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEAS 440 (719)
Q Consensus 380 Lq~er~~~~~~~-~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~ 440 (719)
|+..|..+++.+ +|+.+|. ..|-.+++.++-+......+..|..+-.--..|+-++++..
T Consensus 23 le~~r~~lr~eI~KELKIKe-GAENL~~attd~kk~~~~V~~eL~~sN~kL~~L~~eL~eLn 83 (86)
T d1cxzb_ 23 LELERERLRREIRKELKLKE-GAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH-hHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666777766 7776665 44444554332222335555566655555566666655543
No 5
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.78 E-value=1.5e+02 Score=25.07 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (719)
Q Consensus 202 ~~~L~~E~~~Lq~~~~~L~~k~k~ls~e~~~l~d~~~~~~~e~~~L~~eLe~~~~elek~~rkL 265 (719)
...+..++..+...+..+..+.+.....+..-.........-+..|...+-++..++..+..+.
T Consensus 44 ~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~ 107 (196)
T d1fioa_ 44 ASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNY 107 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777778888888888888877777766655555666777888888888888888776654
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=27.36 E-value=1.4e+02 Score=23.64 Aligned_cols=57 Identities=14% Similarity=0.324 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHh-hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005010 599 EIADMRQKLEAFKRDMVSLSDAL-KSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQ 655 (719)
Q Consensus 599 ei~~Lr~~l~~~~~~~~~l~~~l-~~~~~e~~al~~Eie~~gqA~edmq~Qn~~ll~q 655 (719)
+...+..+++..+.....++..+ +.+.++.++++.++..++.-...+..+-..+-.+
T Consensus 36 ~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~ 93 (110)
T d1seta1 36 EVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444433334444444 2344555667777777777666666555444433
No 7
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=26.93 E-value=1.5e+02 Score=23.80 Aligned_cols=176 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 308 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL 387 (719)
Q Consensus 308 eleE~k~la~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~~~~~I~~S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~ 387 (719)
.+.....-.......+..+...+..+..++..+...+.....-.-......+..++..+...+......+..+..+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (185)
T d2ap3a1 9 AYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKA 88 (185)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhchHHHHhhhhhhhhhHHHHhhHHHHHHHhHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhcHHHHHHH
Q 005010 388 AWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAM 466 (719)
Q Consensus 388 ~~~~~E~~~k~E~~e~~~~~~~~~~~~i~~lE~~LarvR~ere~L~~e~e~~~~~~~k-~~~~~E~r~Lissl~~~i~~L 466 (719)
....... ...............+..+...+..+...+..+............. ...+.+++..+..+...+..+
T Consensus 89 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 163 (185)
T d2ap3a1 89 KSHVDNI-----DNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKL 163 (185)
T ss_dssp -----CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 005010 467 QRQLSKYKEAALDIHILRADVL 488 (719)
Q Consensus 467 k~Ev~R~Ke~~~e~~~Lr~e~~ 488 (719)
...+..+......+..-+.++.
T Consensus 164 ~~~~~~~~~~~~~~~~ek~~le 185 (185)
T d2ap3a1 164 KEVSDKYTKVLNKVQKEKQDVD 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhcC
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.92 E-value=2e+02 Score=22.50 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cc-hh-hhc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005010 317 SHQLLELKGLHDGRIKVLQQLYNLQNTLK---SV-KC-LSS--SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAW 389 (719)
Q Consensus 317 ~~Rl~ELe~l~~e~~~L~~e~~~Lk~~l~---~~-~~-I~~--S~~yk~L~~q~~~lk~eld~~r~~~ekLq~er~~~~~ 389 (719)
..+..+|+.-..++.....++..+.-+.. -+ .+ |.. ......|......+...++.+......++.+...+..
T Consensus 21 ~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 21 SVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677777777776654422 00 11 111 1245577788888888888888877777777777766
Q ss_pred HHHH
Q 005010 390 RETE 393 (719)
Q Consensus 390 ~~~E 393 (719)
.+.+
T Consensus 101 ~l~~ 104 (107)
T d1fxka_ 101 NIQE 104 (107)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6533
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.11 E-value=2.3e+02 Score=22.78 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005010 308 VHKELMDQASHQLLELKG 325 (719)
Q Consensus 308 eleE~k~la~~Rl~ELe~ 325 (719)
.++++......|..+|+.
T Consensus 85 ~~~eA~~~l~~ri~~l~~ 102 (133)
T d1fxkc_ 85 NFEDAMESIKSQKNELES 102 (133)
T ss_dssp EHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 445566666666655443
No 10
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.01 E-value=2e+02 Score=22.08 Aligned_cols=57 Identities=16% Similarity=0.316 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCC--ChhHHHHHHHHHhhcHHHHHHHHHHH------------HHHHHHHHHHHHHHHhh
Q 005010 431 RIEMRLEEASREPG--RKEIIAEFRALVSSFPEDMSAMQRQL------------SKYKEAALDIHILRADV 487 (719)
Q Consensus 431 ~L~~e~e~~~~~~~--k~~~~~E~r~Lissl~~~i~~Lk~Ev------------~R~Ke~~~e~~~Lr~e~ 487 (719)
++..++..+..-+| ++..+.++..-+.-..+=+.+|.-|+ .|+|...+++..|+.++
T Consensus 13 ~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~el 83 (89)
T d1vcsa1 13 EITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDF 83 (89)
T ss_dssp HHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444545444444 46778888887777778888888777 34455555555555443
Done!