Query 005011
Match_columns 719
No_of_seqs 762 out of 4493
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_B Ankyrin repeat domain-c 99.9 3.8E-28 1.3E-32 253.7 9.2 227 196-468 10-243 (269)
2 1wdy_A 2-5A-dependent ribonucl 99.9 7.4E-27 2.5E-31 241.9 18.5 249 199-475 7-284 (285)
3 1yyh_A HN1;, notch 1, ankyrin 99.9 1E-26 3.4E-31 239.5 16.0 215 198-469 11-248 (253)
4 1n11_A Ankyrin; clathrin, BAND 99.9 3.2E-26 1.1E-30 254.2 19.4 247 199-474 115-374 (437)
5 4g8k_A 2-5A-dependent ribonucl 99.9 2.2E-26 7.7E-31 246.7 14.3 202 261-473 115-330 (337)
6 4gpm_A Engineered protein OR26 99.9 1.3E-25 4.3E-30 218.2 18.2 144 320-471 19-163 (169)
7 3aji_A 26S proteasome non-ATPa 99.9 1E-26 3.5E-31 234.8 10.4 218 199-469 8-230 (231)
8 1oy3_D Transcription factor in 99.9 6.8E-26 2.3E-30 235.1 16.5 223 197-473 9-254 (282)
9 3ljn_A Hypothetical protein; a 99.9 6.1E-27 2.1E-31 253.8 7.7 238 198-477 21-277 (364)
10 2f8y_A Notch homolog 1, transl 99.9 1.4E-25 4.7E-30 225.3 16.0 206 208-470 2-217 (223)
11 3d9h_A CDNA FLJ77766, highly s 99.9 4.5E-25 1.5E-29 231.8 19.9 239 199-494 17-263 (285)
12 1k1a_A B-cell lymphoma 3-encod 99.9 1.8E-26 6E-31 234.1 6.5 217 198-468 10-240 (241)
13 2fo1_E LIN-12 protein; beta-ba 99.9 2.6E-25 8.9E-30 242.8 15.8 241 198-470 95-372 (373)
14 3b7b_A Euchromatic histone-lys 99.9 1E-24 3.6E-29 220.9 19.0 145 335-496 74-220 (237)
15 3utm_A Tankyrase-1; tankyrase, 99.9 1.9E-25 6.6E-30 238.7 14.1 247 199-474 26-310 (351)
16 1yyh_A HN1;, notch 1, ankyrin 99.9 1E-24 3.5E-29 224.4 18.7 207 239-496 7-233 (253)
17 1n11_A Ankyrin; clathrin, BAND 99.9 5.6E-25 1.9E-29 244.2 18.0 247 198-473 15-274 (437)
18 2xai_A ASB-9, ankyrin repeat a 99.9 9E-25 3.1E-29 226.1 17.8 214 199-470 5-223 (261)
19 3d9h_A CDNA FLJ77766, highly s 99.9 2.1E-25 7.2E-30 234.3 12.6 213 196-471 58-281 (285)
20 4g8k_A 2-5A-dependent ribonucl 99.9 8.6E-25 2.9E-29 234.3 16.6 246 199-473 27-302 (337)
21 2dzn_A Probable 26S proteasome 99.9 1.9E-24 6.6E-29 217.4 17.4 203 199-494 4-216 (228)
22 2rfa_A Transient receptor pote 99.9 7.9E-25 2.7E-29 221.3 13.9 134 336-471 73-224 (232)
23 1k1a_A B-cell lymphoma 3-encod 99.9 5E-24 1.7E-28 216.0 18.8 205 238-493 5-223 (241)
24 1ikn_D Protein (I-kappa-B-alph 99.9 1.2E-24 4.1E-29 221.0 13.7 187 238-471 4-211 (236)
25 4gpm_A Engineered protein OR26 99.9 5.5E-24 1.9E-28 206.6 17.7 141 339-496 5-146 (169)
26 3aji_A 26S proteasome non-ATPa 99.9 4.8E-24 1.7E-28 215.1 17.7 203 240-493 4-212 (231)
27 4b93_B Ankyrin repeat domain-c 99.9 1.1E-23 3.8E-28 219.8 18.0 156 322-494 70-226 (269)
28 3utm_A Tankyrase-1; tankyrase, 99.9 5.3E-24 1.8E-28 227.5 15.6 247 199-469 60-334 (351)
29 3eu9_A Huntingtin-interacting 99.9 3.4E-24 1.2E-28 216.3 13.1 222 198-473 10-239 (240)
30 2etb_A Transient receptor pote 99.9 3.2E-24 1.1E-28 220.6 12.7 190 242-470 2-247 (256)
31 2pnn_A Transient receptor pote 99.9 3.6E-24 1.2E-28 222.6 12.7 205 238-472 9-262 (273)
32 3hra_A Ankyrin repeat family p 99.9 2E-23 6.8E-28 206.0 17.5 186 240-467 3-201 (201)
33 2rfm_A Putative ankyrin repeat 99.9 3.4E-23 1.2E-27 203.6 19.0 162 264-467 28-190 (192)
34 2fo1_E LIN-12 protein; beta-ba 99.9 1.7E-22 5.9E-27 220.4 21.1 248 204-495 73-355 (373)
35 3ljn_A Hypothetical protein; a 99.9 1.4E-23 4.8E-28 227.4 11.9 211 233-496 11-254 (364)
36 1oy3_D Transcription factor in 99.9 1.2E-22 4.1E-27 210.5 18.4 145 334-495 41-234 (282)
37 1s70_B 130 kDa myosin-binding 99.9 2.2E-23 7.6E-28 218.7 12.5 199 199-494 42-273 (299)
38 2f8y_A Notch homolog 1, transl 99.9 4.6E-22 1.6E-26 199.5 21.1 154 324-494 44-199 (223)
39 3jxi_A Vanilloid receptor-rela 99.9 1.1E-23 3.9E-28 216.8 8.9 200 241-470 4-251 (260)
40 1d9s_A Cyclin-dependent kinase 99.9 4.6E-23 1.6E-27 191.6 12.0 129 332-469 6-136 (136)
41 1wdy_A 2-5A-dependent ribonucl 99.9 5.3E-22 1.8E-26 205.3 20.8 229 241-495 4-262 (285)
42 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.3E-22 4.6E-27 193.2 14.1 126 335-469 35-162 (162)
43 1ikn_D Protein (I-kappa-B-alph 99.9 4.4E-22 1.5E-26 202.0 17.7 171 266-474 3-181 (236)
44 3v31_A Ankyrin repeat family A 99.9 3.6E-22 1.2E-26 191.6 16.0 140 323-470 21-161 (167)
45 2jab_A H10-2-G3; HER2, darpin, 99.9 4.2E-22 1.4E-26 185.0 15.8 125 335-467 11-136 (136)
46 3b7b_A Euchromatic histone-lys 99.9 1.6E-21 5.4E-26 197.4 21.0 180 263-493 3-184 (237)
47 2rfa_A Transient receptor pote 99.9 7.7E-22 2.6E-26 199.3 18.5 153 332-495 31-206 (232)
48 4hbd_A KN motif and ankyrin re 99.9 9.1E-23 3.1E-27 213.4 11.7 184 243-467 77-273 (276)
49 3kea_A K1L; tropism, ANK repea 99.9 2.2E-22 7.6E-27 211.3 14.0 145 321-474 78-225 (285)
50 3kea_A K1L; tropism, ANK repea 99.9 2E-23 6.9E-28 219.3 5.6 213 196-472 30-249 (285)
51 1bi7_B P16INK4A, MTS1, multipl 99.9 1.6E-22 5.3E-27 192.5 10.8 132 336-476 10-143 (156)
52 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.8E-21 6.1E-26 187.6 18.2 137 323-467 32-169 (169)
53 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.5E-21 5.1E-26 176.9 16.6 124 338-469 2-126 (126)
54 3f6q_A Integrin-linked protein 99.9 4.3E-22 1.5E-26 193.6 13.7 132 334-473 35-167 (179)
55 3v31_A Ankyrin repeat family A 99.9 1.8E-21 6.2E-26 186.6 17.7 141 338-495 3-144 (167)
56 3v30_A DNA-binding protein rfx 99.9 9.8E-22 3.3E-26 189.4 15.5 132 335-474 33-165 (172)
57 2xai_A ASB-9, ankyrin repeat a 99.9 2.2E-21 7.5E-26 200.6 19.2 198 270-495 2-208 (261)
58 3twr_A Tankyrase-2; ankyrin re 99.9 3.2E-22 1.1E-26 191.6 11.9 122 338-468 42-164 (165)
59 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2E-22 6.7E-27 205.9 10.8 131 337-475 36-170 (239)
60 3twr_A Tankyrase-2; ankyrin re 99.9 2.1E-21 7.1E-26 185.8 17.3 145 335-496 5-151 (165)
61 3eu9_A Huntingtin-interacting 99.9 1.6E-21 5.4E-26 196.7 16.8 201 239-495 6-219 (240)
62 2rfm_A Putative ankyrin repeat 99.9 2E-21 6.8E-26 190.9 16.6 146 333-495 30-176 (192)
63 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.7E-21 1.3E-25 185.3 17.8 141 337-494 13-154 (169)
64 1awc_B Protein (GA binding pro 99.9 3.2E-21 1.1E-25 182.4 16.7 125 339-472 3-128 (153)
65 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.4E-21 8.2E-26 183.4 15.4 125 332-466 30-155 (156)
66 3f6q_A Integrin-linked protein 99.9 5.2E-21 1.8E-25 185.9 18.0 130 337-474 4-135 (179)
67 1awc_B Protein (GA binding pro 99.9 7.5E-21 2.6E-25 179.9 18.0 133 322-463 19-152 (153)
68 1sw6_A Regulatory protein SWI6 99.9 1.3E-21 4.3E-26 209.8 13.7 222 261-493 42-323 (327)
69 3v30_A DNA-binding protein rfx 99.9 7.2E-21 2.5E-25 183.3 17.0 140 339-495 3-144 (172)
70 2etb_A Transient receptor pote 99.9 1.8E-21 6.2E-26 200.0 13.4 165 322-496 23-231 (256)
71 3hra_A Ankyrin repeat family p 99.9 1.1E-20 3.7E-25 186.3 18.1 143 335-494 36-186 (201)
72 1ihb_A P18-INK4C(INK6), cyclin 99.9 7.3E-21 2.5E-25 181.1 15.4 141 338-495 5-146 (162)
73 2dzn_A Probable 26S proteasome 99.8 1.6E-20 5.4E-25 188.7 18.1 143 335-494 33-182 (228)
74 1n0q_A 3ANK, 3 ankyrin repeats 99.8 7.7E-21 2.6E-25 164.6 13.0 93 371-469 1-93 (93)
75 2pnn_A Transient receptor pote 99.8 8.8E-21 3E-25 196.9 13.6 152 335-496 51-243 (273)
76 2vge_A RELA-associated inhibit 99.8 4.8E-21 1.7E-25 194.9 11.3 130 337-474 20-153 (229)
77 1bd8_A P19INK4D CDK4/6 inhibit 99.8 3.2E-20 1.1E-24 175.6 15.6 138 339-495 3-142 (156)
78 3c5r_A BARD-1, BRCA1-associate 99.8 4E-21 1.4E-25 178.3 8.3 126 335-468 7-133 (137)
79 3jxi_A Vanilloid receptor-rela 99.8 3.4E-20 1.2E-24 190.7 14.8 151 336-496 44-235 (260)
80 1sw6_A Regulatory protein SWI6 99.8 1.1E-21 3.6E-26 210.4 3.0 219 204-455 54-327 (327)
81 3c5r_A BARD-1, BRCA1-associate 99.8 6.1E-20 2.1E-24 170.3 14.2 117 362-494 1-117 (137)
82 3ehr_A Osteoclast-stimulating 99.8 1.2E-20 4E-25 190.0 9.7 131 336-474 71-203 (222)
83 3aaa_C Myotrophin, protein V-1 99.8 9.2E-20 3.1E-24 166.0 14.1 110 337-454 6-116 (123)
84 1s70_B 130 kDa myosin-binding 99.8 2.1E-19 7.2E-24 188.3 17.1 143 340-493 42-239 (299)
85 3t8k_A Uncharacterized protein 99.8 2.1E-20 7.3E-25 184.1 8.9 130 336-471 36-181 (186)
86 4hbd_A KN motif and ankyrin re 99.8 8.3E-20 2.8E-24 190.8 13.8 147 332-495 105-259 (276)
87 1ycs_B 53BP2, P53BP2; ankyrin 99.8 5.1E-20 1.8E-24 188.0 11.2 129 337-474 4-133 (239)
88 1d9s_A Cyclin-dependent kinase 99.8 8E-20 2.7E-24 169.5 10.6 117 362-494 2-119 (136)
89 3lvq_E ARF-GAP with SH3 domain 99.8 1.5E-19 5.1E-24 205.0 14.9 128 340-475 134-271 (497)
90 2cxk_A Camta1, calmodulin bind 99.8 1.1E-20 3.8E-25 163.8 4.3 88 164-257 4-91 (95)
91 3t8k_A Uncharacterized protein 99.8 5E-20 1.7E-24 181.5 9.5 142 338-497 6-165 (186)
92 1dcq_A PYK2-associated protein 99.8 3.6E-19 1.2E-23 186.6 16.3 124 339-470 131-264 (278)
93 3deo_A Signal recognition part 99.8 1.9E-19 6.5E-24 175.9 13.1 110 337-454 43-153 (183)
94 3ui2_A Signal recognition part 99.8 1.6E-19 5.6E-24 185.1 11.5 126 337-470 44-186 (244)
95 2dfs_A Myosin-5A; myosin-V, in 99.8 5.4E-19 1.9E-23 214.5 17.8 142 514-702 766-915 (1080)
96 3aaa_C Myotrophin, protein V-1 99.8 7.4E-19 2.5E-23 159.9 12.6 110 369-493 4-113 (123)
97 2b0o_E UPLC1; arfgap, structur 99.8 5.8E-19 2E-23 187.2 13.1 123 339-469 152-284 (301)
98 2l6b_A NR1C; ankyrin, consensu 99.8 2.1E-19 7.1E-24 161.4 7.8 102 367-474 4-105 (115)
99 3jue_A Arfgap with coiled-coil 99.8 1.3E-18 4.5E-23 189.4 14.0 125 338-470 199-327 (368)
100 1bi7_B P16INK4A, MTS1, multipl 99.8 7.5E-19 2.6E-23 166.9 9.0 111 332-451 39-151 (156)
101 2jab_A H10-2-G3; HER2, darpin, 99.8 4E-18 1.4E-22 158.0 12.6 113 368-495 10-122 (136)
102 2vge_A RELA-associated inhibit 99.7 5.4E-18 1.8E-22 172.3 12.1 110 358-473 3-116 (229)
103 1n0r_A 4ANK, 4 ankyrin repeats 99.7 2.3E-17 8E-22 149.1 13.2 109 371-494 1-109 (126)
104 2zgd_A 3 repeat synthetic anky 99.7 1.2E-17 4.2E-22 149.3 10.7 93 365-463 17-109 (110)
105 3deo_A Signal recognition part 99.7 7.4E-18 2.5E-22 164.5 9.9 110 368-493 40-150 (183)
106 3ehr_A Osteoclast-stimulating 99.7 7.5E-18 2.6E-22 169.3 10.0 112 368-494 69-181 (222)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.7 3E-17 1E-21 141.8 12.1 91 338-430 2-93 (93)
108 3ui2_A Signal recognition part 99.7 1.6E-17 5.3E-22 170.3 9.5 109 369-493 42-151 (244)
109 2l6b_A NR1C; ankyrin, consensu 99.7 4.1E-17 1.4E-21 146.3 6.9 106 335-448 6-112 (115)
110 2b0o_E UPLC1; arfgap, structur 99.6 1.8E-16 6.1E-21 168.0 9.7 109 335-457 187-299 (301)
111 2dfs_A Myosin-5A; myosin-V, in 99.6 3.5E-15 1.2E-19 181.2 21.7 122 512-643 787-914 (1080)
112 2aja_A Ankyrin repeat family p 99.6 4.2E-17 1.4E-21 178.1 -3.2 118 339-472 129-253 (376)
113 3jue_A Arfgap with coiled-coil 99.6 5.7E-15 2E-19 160.7 12.2 113 368-495 195-310 (368)
114 3lvq_E ARF-GAP with SH3 domain 99.6 6.8E-15 2.3E-19 166.6 13.0 97 335-433 168-268 (497)
115 2aja_A Ankyrin repeat family p 99.6 5E-16 1.7E-20 169.6 1.5 136 319-468 80-223 (376)
116 2zgd_A 3 repeat synthetic anky 99.5 3.8E-14 1.3E-18 126.4 10.7 87 336-424 22-109 (110)
117 1dcq_A PYK2-associated protein 99.5 5.9E-14 2E-18 146.8 13.8 111 371-496 129-248 (278)
118 2ix7_C Myosin-5A; contractIle 98.9 3.8E-09 1.3E-13 83.0 8.5 49 568-616 4-52 (58)
119 1n2d_C IQ2 and IQ3 motifs from 98.7 2.1E-08 7.2E-13 75.4 6.9 42 570-611 4-47 (48)
120 2ix7_C Myosin-5A; contractIle 98.5 4.7E-07 1.6E-11 70.9 8.5 48 591-639 4-51 (58)
121 1n2d_C IQ2 and IQ3 motifs from 98.4 7.9E-07 2.7E-11 66.7 6.6 42 591-633 2-45 (48)
122 3muj_A Transcription factor CO 98.1 1.9E-06 6.6E-11 77.4 3.9 84 166-256 5-90 (138)
123 3mlp_A Transcription factor CO 97.6 4.4E-05 1.5E-09 78.3 5.2 85 165-256 230-316 (402)
124 1wdc_A Scallop myosin; calcium 97.1 0.00099 3.4E-08 52.9 6.3 42 570-611 7-51 (64)
125 2bl0_A Major plasmodial myosin 97.0 0.0012 4.3E-08 52.1 6.2 40 571-610 6-48 (63)
126 1i84_S Smooth muscle myosin he 96.9 0.0057 1.9E-07 75.9 14.6 43 570-612 793-838 (1184)
127 1i84_S Smooth muscle myosin he 96.9 0.0093 3.2E-07 73.9 16.0 46 514-567 790-835 (1184)
128 1kk8_A Myosin heavy chain, str 96.9 0.0012 4.2E-08 78.1 7.7 44 569-612 779-825 (837)
129 1wdc_A Scallop myosin; calcium 96.8 0.0035 1.2E-07 49.7 7.4 38 591-628 5-45 (64)
130 2bl0_A Major plasmodial myosin 96.7 0.0029 1E-07 50.0 6.4 44 515-566 3-46 (63)
131 1uad_C RSEC5, exocyst complex 96.6 0.0033 1.1E-07 54.5 6.6 84 166-257 7-95 (99)
132 3tc9_A Hypothetical hydrolase; 96.3 0.0034 1.2E-07 69.0 5.9 90 163-258 14-107 (430)
133 2uzx_B Hepatocyte growth facto 96.0 0.0049 1.7E-07 72.3 5.2 92 166-259 541-638 (727)
134 1kk8_A Myosin heavy chain, str 95.9 0.014 4.9E-07 69.0 8.6 43 588-630 775-820 (837)
135 3kya_A Putative phosphatase; s 95.4 0.0081 2.8E-07 67.1 4.1 89 163-258 14-105 (496)
136 2uzx_B Hepatocyte growth facto 95.3 0.0031 1.1E-07 74.0 0.0 74 166-244 635-709 (727)
137 3hrp_A Uncharacterized protein 95.1 0.013 4.3E-07 64.0 4.4 88 163-257 14-105 (409)
138 4hw6_A Hypothetical protein, I 94.9 0.029 1E-06 61.6 6.6 90 163-258 16-109 (433)
139 2yrp_A Nuclear factor of activ 93.3 0.1 3.5E-06 45.8 5.2 92 162-257 4-109 (114)
140 2l53_B CAM, voltage-gated sodi 93.1 0.073 2.5E-06 35.4 3.1 16 551-566 7-22 (31)
141 2kxw_B Sodium channel protein 93.0 0.058 2E-06 34.7 2.4 16 550-565 6-21 (27)
142 3gn4_A Myosin-VI; unconvention 92.9 0.9 3.1E-05 41.6 11.1 30 592-621 45-74 (148)
143 3gn4_A Myosin-VI; unconvention 92.3 0.5 1.7E-05 43.4 8.6 31 571-601 47-77 (148)
144 2l53_B CAM, voltage-gated sodi 90.7 0.17 6E-06 33.5 2.7 20 569-588 6-25 (31)
145 2kxw_B Sodium channel protein 89.7 0.25 8.4E-06 31.8 2.7 18 569-586 6-23 (27)
146 4anj_A Unconventional myosin-V 87.0 0.97 3.3E-05 54.7 7.8 40 571-611 777-816 (1052)
147 1w7j_A Myosin VA; motor protei 78.7 1.4 4.6E-05 51.9 4.4 27 591-617 767-793 (795)
148 1w7j_A Myosin VA; motor protei 78.3 1.8 6.1E-05 50.9 5.3 26 570-595 769-794 (795)
149 4anj_A Unconventional myosin-V 75.0 3.7 0.00013 49.7 6.8 36 517-564 776-811 (1052)
150 1ikn_C P50D, protein (NF-kappa 72.3 5.7 0.00019 35.1 5.6 89 167-257 4-106 (119)
151 1my7_A NF-kappab P65 (RELA) su 71.0 8.2 0.00028 33.8 6.2 87 167-256 4-100 (114)
152 1oy3_C Transcription factor P6 63.2 14 0.00048 33.2 6.3 87 167-256 4-100 (136)
153 1u36_A DNA-binding, nuclear fa 62.4 9.9 0.00034 32.8 5.0 88 167-256 4-105 (106)
154 4dck_A Sodium channel protein 59.0 9.4 0.00032 35.8 4.6 18 571-588 132-149 (168)
155 4dck_A Sodium channel protein 58.2 10 0.00034 35.6 4.6 24 547-570 127-150 (168)
156 2v2t_A RELB, transcription fac 58.2 17 0.00058 37.1 6.7 89 165-256 189-287 (288)
157 1zk9_A Transcription factor RE 57.5 5.2 0.00018 34.8 2.4 91 164-256 10-109 (110)
158 2o61_A Transcription factor P6 46.3 19 0.00067 39.9 5.3 87 167-258 177-275 (540)
159 1ikn_A P65, protein (NF-kappa- 46.1 27 0.00091 35.6 5.8 90 165-257 174-273 (286)
160 1imh_C NF-AT5, tonebp, nuclear 45.0 32 0.0011 35.0 6.2 88 165-256 180-280 (281)
161 1a3q_A Protein (nuclear factor 42.4 41 0.0014 34.2 6.6 88 166-255 185-284 (285)
162 1nfk_A Protein (nuclear factor 39.6 54 0.0018 34.0 7.0 91 165-257 208-312 (325)
163 2ycu_A Non muscle myosin 2C, a 38.4 6.3 0.00021 47.6 -0.2 55 572-626 767-823 (995)
164 3orj_A Sugar-binding protein; 37.3 36 0.0012 36.4 5.4 70 165-245 112-188 (439)
165 3iag_C Recombining binding pro 37.0 17 0.00058 38.6 2.8 66 183-255 343-419 (422)
166 1p7h_L Nuclear factor of activ 32.0 80 0.0027 32.1 6.7 88 163-256 182-285 (286)
167 1gji_A C-REL protein, C-REL pr 28.7 87 0.003 31.6 6.3 88 164-256 176-274 (275)
168 1svc_P Protein (nuclear factor 27.9 65 0.0022 33.8 5.4 89 166-257 249-352 (365)
169 1g8x_A Myosin II heavy chain f 27.5 5.4E+02 0.018 30.9 14.1 34 574-607 777-810 (1010)
170 3dvk_B Voltage-dependent R-typ 21.7 55 0.0019 20.1 2.0 14 571-584 8-21 (23)
No 1
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=253.67 Aligned_cols=227 Identities=13% Similarity=0.063 Sum_probs=144.7
Q ss_pred ccCCCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc-----cCCCCCCCCCCC
Q 005011 196 LHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ-----LHAPVASSEDKS 270 (719)
Q Consensus 196 ~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~-----~~~~~~~~~d~~ 270 (719)
...+.+++||..|++++++.|++.|... ........-.....+.+|++.++........ ..+++++..|.+
T Consensus 10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~----~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 10 REVEKLLRAVADGDLEMVRYLLEWTEED----LEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------CCCCTTCCCTT
T ss_pred cchhHHHHHHHcCCHHHHHHHHHCCCcc----cccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 3446789999999999999999977321 0011110112334566788777655443322 135677778888
Q ss_pred CccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcC
Q 005011 271 KWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSK 350 (719)
Q Consensus 271 g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~ 350 (719)
|+||||++++... . +....|+..+.+.......+.++++.++..+.
T Consensus 86 G~TpLh~A~~~g~--------~--------------------------~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~ 131 (269)
T 4b93_B 86 GSSPLHVAALHGR--------A--------------------------DLIPLLLKHGANAGARNADQAVPLHLACQQGH 131 (269)
T ss_dssp SCCHHHHHHHTTC--------T--------------------------THHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCCHHHHHHHcCc--------H--------------------------HHHHHHHhcCCCcCccCCCCCCccccccccCh
Confidence 9999888764320 1 11234444445555555566777877777776
Q ss_pred hHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCC
Q 005011 351 LKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGA 429 (719)
Q Consensus 351 ~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga 429 (719)
.. ++++|++ |+++|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.++|++|+++||
T Consensus 132 ~~--~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga 209 (269)
T 4b93_B 132 FQ--VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA 209 (269)
T ss_dssp HH--HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence 53 6777777 88898888889999999999999999999999999999988889999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCC
Q 005011 430 KPNLVTDPTSQNPGGLNAADIASKKGF-DGLAAFLSEQAL 468 (719)
Q Consensus 430 ~~~~~td~~~~d~~G~TpL~lA~~~g~-~~iv~~Ll~~Ga 468 (719)
+++. +|..|.||||+|+.+|+ .+++++|...++
T Consensus 210 d~~~------~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~ 243 (269)
T 4b93_B 210 SVQV------LNKRQRTAVDCAEQNSKIMELLQVVPSCVA 243 (269)
T ss_dssp CSCC------CCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred CCCC------cCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence 8888 88889999999887775 234444444443
No 2
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.94 E-value=7.4e-27 Score=241.90 Aligned_cols=249 Identities=14% Similarity=0.148 Sum_probs=198.0
Q ss_pred CCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCCccH
Q 005011 199 SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSKWEE 274 (719)
Q Consensus 199 ~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g~t~ 274 (719)
+.+++||..|++++++.|++.|.. +.. .....|.||+|.|+..+..+.+ ..+.+++..|..|+||
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~-----~~~------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 75 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGAN-----VNF------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-----TTC------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCC-----ccc------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 468899999999999999998832 111 1134678999999998887766 2356677788999999
Q ss_pred HHHHH-----HHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhccc---CcHHHHHHHhcCCCCC----------cc
Q 005011 275 FQVQM-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCIS---NSWAYLFKSVGDKRTS----------LP 336 (719)
Q Consensus 275 l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~l~~~~~~----------~~ 336 (719)
||+++ +++++|...+.+++..... ...++..+... +..+.|++.+.+.... ..
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~---------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 146 (285)
T 1wdy_A 76 FLLAAIAGSVKLLKLFLSKGADVNECDFY---------GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCBCTT---------CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCcc---------cCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhcc
Confidence 99974 6888998888765432211 11223333222 2344555555444433 34
Q ss_pred cccchHHHHHHhcChHHHHHHHHHc--CCCCCcccCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCccccCCCCcHHH
Q 005011 337 EAKDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLGY----TWAILLFSWSGLSLDFRDKYGWTALH 410 (719)
Q Consensus 337 ~~~~~l~~aa~~~~~~e~lv~~Ll~--ga~in~~d~~G~T~LH~Aa~~g~----~~~v~~Ll~~Gadin~~d~~G~TpLh 410 (719)
.+.++++.++..++.. ++++|++ |++++..|..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||
T Consensus 147 ~g~t~L~~A~~~~~~~--~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 147 GGATALMDAAEKGHVE--VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CCCCHHHHHHHHTCHH--HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred CCCcHHHHHHHcCCHH--HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 4567888888877754 6777775 99999999999999999999999 99999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccc
Q 005011 411 WAAYYGREKMVVDLLS-AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM 475 (719)
Q Consensus 411 ~Aa~~G~~~iv~~Ll~-~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~ 475 (719)
+|+..|+.+++++|++ .|++++. +|..|.||||+|+..|+.+++++|+++|++++..|+
T Consensus 225 ~A~~~~~~~~v~~Ll~~~g~~~~~------~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQEHIEIND------TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HHHHTTCHHHHHHHHHSSSCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred HHHHcCCHHHHHHHHhccCCCccc------cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 9999999999999999 8999998 899999999999999999999999999999988764
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.94 E-value=1e-26 Score=239.47 Aligned_cols=215 Identities=14% Similarity=0.144 Sum_probs=153.8
Q ss_pred CCCcceEEEcC-------------CchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cC
Q 005011 198 LSKSNMFCVCG-------------EVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LH 260 (719)
Q Consensus 198 ~~~~~~ac~fG-------------~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~ 260 (719)
.+++|+||..| +.+++..|++.|... ....+..|.||||.|+..++.+.+ ..
T Consensus 11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~-----------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 79 (253)
T 1yyh_A 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL-----------HNQTDRTGETALHLAARYSRSDAAKRLLEA 79 (253)
T ss_dssp ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc-----------ccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 47899999988 899999999877321 111245788999999988887766 23
Q ss_pred CCCCCCCCCCCccHHHHHHH-----HHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCc
Q 005011 261 APVASSEDKSKWEEFQVQMR-----LAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSL 335 (719)
Q Consensus 261 ~~~~~~~d~~g~t~l~l~~r-----l~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~ 335 (719)
+.+++..|..|+||||+++. ++++|+..+. .+.....
T Consensus 80 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--------------------------------------~~~~~~~ 121 (253)
T 1yyh_A 80 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA--------------------------------------TDLDARM 121 (253)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT--------------------------------------SCTTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------------------------------------CCccccC
Confidence 56777788899999999764 3333333221 0223334
Q ss_pred ccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHH
Q 005011 336 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY 414 (719)
Q Consensus 336 ~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~ 414 (719)
..+.++++.++..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 122 ~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~ 199 (253)
T 1yyh_A 122 HDGTTPLILAARLAVEG--MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199 (253)
T ss_dssp TTCCCHHHHHHHHTCSS--HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCcHHHHHHHcChHH--HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 45678899988887764 7888888 99999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 005011 415 YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 469 (719)
Q Consensus 415 ~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~ 469 (719)
.|+.+++++|+++|++++. +|..|.||||+|+..|+.+|+++|....-.
T Consensus 200 ~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 200 EGSYETAKVLLDHFANRDI------TDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp HTCHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred CCCHHHHHHHHHcCCCccc------cccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 9999999999999999998 899999999999999999999999876543
No 4
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.94 E-value=3.2e-26 Score=254.19 Aligned_cols=247 Identities=14% Similarity=0.147 Sum_probs=190.9
Q ss_pred CCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCCccH
Q 005011 199 SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSKWEE 274 (719)
Q Consensus 199 ~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g~t~ 274 (719)
+++|+||..|+.+++..|++.|... ...+..|.||+|.|+..++.+.+ ..+.+++..+..|+||
T Consensus 115 t~L~~A~~~g~~~~v~~Ll~~~~~~------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 182 (437)
T 1n11_A 115 TPLHIAAREGHVETVLALLEKEASQ------------ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP 182 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCH
T ss_pred cHHHHHHHcCCHHHHHHHHhCCCCC------------cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence 4566777777777777777655211 11234567888888887776655 2345667778888899
Q ss_pred HHHHH-----HHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhccc---CcHHHHHHHhcCCCCCcccccchHHHHH
Q 005011 275 FQVQM-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCIS---NSWAYLFKSVGDKRTSLPEAKDSFFELT 346 (719)
Q Consensus 275 l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~l~~~~~~~~~~~~~l~~aa 346 (719)
||+++ .++++|+..+.+.+.... ....++..+... +....|++.+.+.+.....+.++++.++
T Consensus 183 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 253 (437)
T 1n11_A 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAW---------NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253 (437)
T ss_dssp HHHHHHTTCHHHHHHHGGGTCCSCCCCT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCcCC---------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 98864 577888877765432111 011223333222 2345566666666666667788899888
Q ss_pred HhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHH
Q 005011 347 LKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLL 425 (719)
Q Consensus 347 ~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll 425 (719)
..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+
T Consensus 254 ~~g~~~--~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 331 (437)
T 1n11_A 254 QEGHAE--MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331 (437)
T ss_dssp HTTCHH--HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred HCCCHH--HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 877754 7888988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Q 005011 426 SAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND 474 (719)
Q Consensus 426 ~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~ 474 (719)
++|++++. +|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 332 ~~gad~n~------~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~ 374 (437)
T 1n11_A 332 QHQADVNA------KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374 (437)
T ss_dssp HTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred hcCCCCCC------CCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCC
Confidence 99999998 89999999999999999999999999999986543
No 5
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.93 E-value=2.2e-26 Score=246.68 Aligned_cols=202 Identities=14% Similarity=0.090 Sum_probs=151.0
Q ss_pred CCCCCCCCCCCccHHHHHH-----HHHHHhhcCCCCcccccCCCCCC-ChHHHhhhhhhhhcccCc---HHHHHH-HhcC
Q 005011 261 APVASSEDKSKWEEFQVQM-----RLAHLLFSSFKGLNILSSKVPPN-SLKEAKKFASKSTCISNS---WAYLFK-SVGD 330 (719)
Q Consensus 261 ~~~~~~~d~~g~t~l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~li~-~l~~ 330 (719)
..+++..|..|+||||++. .++++|...+.++++........ .......++++.+...+. .+.|+. .+.+
T Consensus 115 ~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad 194 (337)
T 4g8k_A 115 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 194 (337)
T ss_dssp TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC
T ss_pred cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC
Confidence 3456677889999999974 68888888887765433211100 000011223333333232 344443 2455
Q ss_pred CCCCcccccchHHHHHHhcC--hHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCccccCCCC
Q 005011 331 KRTSLPEAKDSFFELTLKSK--LKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWS-GLSLDFRDKYGW 406 (719)
Q Consensus 331 ~~~~~~~~~~~l~~aa~~~~--~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~ 406 (719)
.+.....+.++++.++.... ..+.++++|++ |+++|.+|..|+||||+|+..|+.++++.|+.. |+++|.+|..|+
T Consensus 195 ~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~ 274 (337)
T 4g8k_A 195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 274 (337)
T ss_dssp TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSC
T ss_pred cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCC
Confidence 55556677788888877543 22347888888 999999999999999999999999999999975 899999999999
Q ss_pred cHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 005011 407 TALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN 473 (719)
Q Consensus 407 TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~ 473 (719)
||||+|+..|+.++|++||++||+++. + ||||+|+.+|+.+++++|+++||++++.
T Consensus 275 TpL~~A~~~g~~~iv~~Ll~~GAd~n~------~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 275 TALLLAVELKLKKIAELLCKRGASTDC------G-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp BHHHHHHHTTCHHHHHHHHTTSCSSTT------C-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCC------C-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 999999999999999999999999886 3 5999999999999999999999999764
No 6
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.93 E-value=1.3e-25 Score=218.24 Aligned_cols=144 Identities=22% Similarity=0.290 Sum_probs=128.0
Q ss_pred cHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 005011 320 SWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSL 398 (719)
Q Consensus 320 ~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadi 398 (719)
.++.|++.+.+.+....++.++++.++..+... +++.|++ |++++.+|..|+||||+||..|+.++|++|+++|+++
T Consensus 19 ~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~--~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadv 96 (169)
T 4gpm_A 19 RVKDLIENGADVNASDSDGRTPLHHAAENGHKE--VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 96 (169)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHH--HHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCC
Confidence 345666667777777778889999988888754 6778888 9999999999999999999999999999999999999
Q ss_pred ccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Q 005011 399 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQ 471 (719)
Q Consensus 399 n~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~ 471 (719)
|.+|..|+||||+|+..|+.++|++|+++|++++. +|..|.||||+|+..|+.+++++|+++||+.+
T Consensus 97 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~------~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 97 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT------SDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 99999999999999999999999999999999998 89999999999999999999999999999875
No 7
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.93 E-value=1e-26 Score=234.81 Aligned_cols=218 Identities=13% Similarity=0.062 Sum_probs=167.7
Q ss_pred CCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCCccH
Q 005011 199 SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSKWEE 274 (719)
Q Consensus 199 ~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g~t~ 274 (719)
+.+++||..|++++++.++..+.. .+ -..+..|.||+|.|+..+..+.+ ..+.+++..|..|+||
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~----------~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 76 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKS----------LA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGG----------GG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred chHHHHHHhCCHHHHHHHHHhchh----------hh-hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCH
Confidence 468999999999999999986521 01 12235677888888888777655 2355667778888899
Q ss_pred HHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHH
Q 005011 275 FQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEW 354 (719)
Q Consensus 275 l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~ 354 (719)
||+++.... . +....|++.+.+.+.....+.++++.++..++..
T Consensus 77 L~~A~~~~~--------~--------------------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-- 120 (231)
T 3aji_A 77 LHIAASAGX--------D--------------------------EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE-- 120 (231)
T ss_dssp HHHHHHHTC--------H--------------------------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH--
T ss_pred HHHHHHcCH--------H--------------------------HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH--
Confidence 888764310 0 0112333333333334445667888888777654
Q ss_pred HHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCC
Q 005011 355 LLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL 433 (719)
Q Consensus 355 lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~ 433 (719)
++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 121 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200 (231)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence 6788887 999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 005011 434 VTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 469 (719)
Q Consensus 434 ~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~ 469 (719)
+|..|.||||+|+..++.+++++|+++|++
T Consensus 201 ------~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 201 ------ENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp ------CCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred ------CCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 888999999999988999999999988865
No 8
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.93 E-value=6.8e-26 Score=235.12 Aligned_cols=223 Identities=13% Similarity=0.026 Sum_probs=153.7
Q ss_pred cCCCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCCc
Q 005011 197 HLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSKW 272 (719)
Q Consensus 197 ~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g~ 272 (719)
..+++|+||.+|+.++++.|++.|.... .+. ..+..|.||||.|+..++.+.+ ..+++++..|..|+
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~ 79 (282)
T 1oy3_D 9 GDTALHLAVIHQHEPFLDFLLGFSAGHE--------YLD-LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH 79 (282)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHHTTSG--------GGG-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSC
T ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcc--------ccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 3478999999999999999998762110 011 1223556667776666655544 13455555566666
Q ss_pred cHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCc-----------------
Q 005011 273 EEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSL----------------- 335 (719)
Q Consensus 273 t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~----------------- 335 (719)
||||++++.. ...+++.+...+...
T Consensus 80 tpL~~A~~~~--------------------------------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 121 (282)
T 1oy3_D 80 TALHLACRVR--------------------------------------AHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121 (282)
T ss_dssp CHHHHHTTTT--------------------------------------CHHHHHHHSSSCCSSCCCC-------------
T ss_pred CHHHHHHHcC--------------------------------------CcchhHhhhccCCCCchhhHHHHhhcccccCc
Confidence 6666654321 122333443332221
Q ss_pred ccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCC-CCcHHHHHH
Q 005011 336 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKY-GWTALHWAA 413 (719)
Q Consensus 336 ~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~-G~TpLh~Aa 413 (719)
.....+++.++....... +...+.. +.+++..|..|.||||+|+..|+.+++++|+++|++++.++.. |+||||+|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~ 200 (282)
T 1oy3_D 122 DTSHAPAAVDSQPNPENE-EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200 (282)
T ss_dssp -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred chhcchhhhccccccchh-hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHH
Confidence 111122333332222222 3333334 7789999999999999999999999999999999999999865 999999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 005011 414 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN 473 (719)
Q Consensus 414 ~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~ 473 (719)
..|+.++|++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 201 ~~~~~~~v~~Ll~~gad~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 254 (282)
T 1oy3_D 201 EAQAASVLELLLKAGADPTA------RMYGGRTPLGSALLRPNPILARLLRAHGAPEPED 254 (282)
T ss_dssp HTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCC
T ss_pred HcCCHHHHHHHHHcCCCCcc------cccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcC
Confidence 99999999999999999998 8999999999999999999999999999998544
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.93 E-value=6.1e-27 Score=253.83 Aligned_cols=238 Identities=14% Similarity=0.117 Sum_probs=183.9
Q ss_pred CCCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc--cCCCCCCCCCCCCccHH
Q 005011 198 LSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ--LHAPVASSEDKSKWEEF 275 (719)
Q Consensus 198 ~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~--~~~~~~~~~d~~g~t~l 275 (719)
.+++|+||..|+.++++.|++.|+. +. ..+..|.||||.|+..++.+.+ +.....+..+.+|+|||
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~-----~~-------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L 88 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVS-----PT-------IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPI 88 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCC-----TT-------CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-----cc-------ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHH
Confidence 4689999999999999999998732 11 1245788999999999988876 33333344456899999
Q ss_pred HHHH-----HHHHHhhcC----CCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHH
Q 005011 276 QVQM-----RLAHLLFSS----FKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELT 346 (719)
Q Consensus 276 ~l~~-----rl~~lL~~~----~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa 346 (719)
|+++ .++++|+.. +...+.+-...... .. ...........+.++|+.++
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-----------------~~-----~~~~~~~~~~~g~t~L~~A~ 146 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDER-----------------EV-----NEIGSHVKHCKGQTALHWCV 146 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCC-----------------CE-----EEETTEEEEESCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchH-----------------hh-----hhhccccCCCCCCCHHHHHH
Confidence 9975 466666655 22211100000000 00 00011112345667888888
Q ss_pred Hhc--ChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCC-----CccccCCCCcHHHHHHHcCcH
Q 005011 347 LKS--KLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLS-----LDFRDKYGWTALHWAAYYGRE 418 (719)
Q Consensus 347 ~~~--~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gad-----in~~d~~G~TpLh~Aa~~G~~ 418 (719)
..+ +. + ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++ +|.+|..|+||||+|+..|+.
T Consensus 147 ~~g~~~~-~-~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~ 224 (364)
T 3ljn_A 147 GLGPEYL-E-MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224 (364)
T ss_dssp HSCGGGH-H-HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred HcCCchH-H-HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCH
Confidence 877 44 4 7899998 999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccc
Q 005011 419 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTL 477 (719)
Q Consensus 419 ~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l 477 (719)
++|++|+++|++++. +|..|.||||+|+..|+.+++++|+++|+++...+...
T Consensus 225 ~~v~~Ll~~gad~~~------~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 277 (364)
T 3ljn_A 225 DVAMRFVEMGIDVNM------EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPY 277 (364)
T ss_dssp HHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTT
T ss_pred HHHHHHHHcCCCCCC------CCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcc
Confidence 999999999999998 89999999999999999999999999999876555443
No 10
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.93 E-value=1.4e-25 Score=225.29 Aligned_cols=206 Identities=16% Similarity=0.183 Sum_probs=165.7
Q ss_pred CCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCCccHHHHHHH---
Q 005011 208 GEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSKWEEFQVQMR--- 280 (719)
Q Consensus 208 G~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g~t~l~l~~r--- 280 (719)
|+.++++.|++.|.. +.. ..+..|.||+|.|+..+..+.+ ..+.+++..|..|+||||+++.
T Consensus 2 g~~~~i~~Ll~~g~~-----~~~------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 70 (223)
T 2f8y_A 2 DAPAVISDFIYQGAS-----LHN------QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 70 (223)
T ss_dssp ---CCEETTEETTCC-----TTC------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CcHHHHHHHHHcCCC-----ccc------ccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 678888889887731 110 1234678899999888877765 2356677778889999998753
Q ss_pred --HHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHH
Q 005011 281 --LAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLER 358 (719)
Q Consensus 281 --l~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~ 358 (719)
++++|+..+. .+.......+.++++.++..++.. ++++
T Consensus 71 ~~~v~~Ll~~~~--------------------------------------~~~~~~~~~g~t~L~~A~~~~~~~--~~~~ 110 (223)
T 2f8y_A 71 QGVFQILIRNRA--------------------------------------TDLDARMHDGTTPLILAARLAVEG--MLED 110 (223)
T ss_dssp HHHHHHHHHBTT--------------------------------------SCTTCCCTTCCCHHHHHHHHTCHH--HHHH
T ss_pred HHHHHHHHHcCC--------------------------------------CCcccCCCCCCcHHHHHHHhCcHH--HHHH
Confidence 3333333221 022333445678888888887754 7888
Q ss_pred HHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCC
Q 005011 359 VVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDP 437 (719)
Q Consensus 359 Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~ 437 (719)
|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 111 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~---- 186 (223)
T 2f8y_A 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI---- 186 (223)
T ss_dssp HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC----
T ss_pred HHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc----
Confidence 888 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 005011 438 TSQNPGGLNAADIASKKGFDGLAAFLSEQALVA 470 (719)
Q Consensus 438 ~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~ 470 (719)
+|..|.||||+|+..|+.+++++|+++|+..
T Consensus 187 --~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 187 --TDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp --CCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred --ccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 8999999999999999999999999999965
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.93 E-value=4.5e-25 Score=231.79 Aligned_cols=239 Identities=14% Similarity=0.043 Sum_probs=159.2
Q ss_pred CCcceEEEcCCchhhHHHhhccce---eeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCC
Q 005011 199 SKSNMFCVCGEVRVPAEFVQAGVY---RCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSK 271 (719)
Q Consensus 199 ~~~~~ac~fG~~ev~~~li~~Gvl---~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g 271 (719)
+.+|+||+.|+.+.+..++..+-- ....-.+... ..+..|.||||.|+..+..+.+ ..+.+++..|.+|
T Consensus 17 ~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g 92 (285)
T 3d9h_A 17 RGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLM----GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH 92 (285)
T ss_dssp -------------------------CCSEECCCCTTC----SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC
T ss_pred HHHHHHhhcCCCCCcccCCCCccccccchhhhhCccc----CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 579999999998777776554310 0000011100 1234567777777777766654 1345566667777
Q ss_pred ccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcCh
Q 005011 272 WEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKL 351 (719)
Q Consensus 272 ~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~ 351 (719)
+||||+++...+ .+....|++.+.+.+.....+.++++.++..++.
T Consensus 93 ~t~L~~A~~~g~----------------------------------~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~ 138 (285)
T 3d9h_A 93 VSPLHEACLGGH----------------------------------LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 138 (285)
T ss_dssp CCHHHHHHHTTC----------------------------------HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH
T ss_pred CCHHHHHHHCCc----------------------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHH
Confidence 788777653210 0112334444444444455677889998888876
Q ss_pred HHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q 005011 352 KEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAK 430 (719)
Q Consensus 352 ~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~ 430 (719)
. ++++|++ |++++..+ .|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.|++
T Consensus 139 ~--~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 215 (285)
T 3d9h_A 139 D--CVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215 (285)
T ss_dssp H--HHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred H--HHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC
Confidence 4 7888888 99988644 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhh
Q 005011 431 PNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVD 494 (719)
Q Consensus 431 ~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~ 494 (719)
++ .|..|.||||+|+..|+.+++++|+++|++++.. +..+.||++.+.
T Consensus 216 ~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~---------d~~g~t~l~~A~ 263 (285)
T 3d9h_A 216 VN-------QGKGQDSPLHAVVRTASEELACLLMDFGADTQAK---------NAEGKRPVELVP 263 (285)
T ss_dssp TT-------CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCC---------CTTSCCGGGGSC
T ss_pred CC-------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc---------CCCCCCHHHHhc
Confidence 98 4678999999999999999999999999998543 344567776654
No 12
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.92 E-value=1.8e-26 Score=234.14 Aligned_cols=217 Identities=13% Similarity=0.072 Sum_probs=114.6
Q ss_pred CCCcceEEEcCCchhhHHHhh----ccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCC
Q 005011 198 LSKSNMFCVCGEVRVPAEFVQ----AGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDK 269 (719)
Q Consensus 198 ~~~~~~ac~fG~~ev~~~li~----~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~ 269 (719)
.+++|+||..|+.+++..|++ .|.. .. ..+..|.||+|.|+..++.+.+ ..+.+++..|.
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--------~~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 77 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRE--------LD----IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR 77 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCC--------SC----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CC----cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence 467899999999999998886 2311 00 1123455566666555544433 12334444455
Q ss_pred CCccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhc----CCCCCcccccchHHHH
Q 005011 270 SKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVG----DKRTSLPEAKDSFFEL 345 (719)
Q Consensus 270 ~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~----~~~~~~~~~~~~l~~a 345 (719)
.|+||||++++... . +....|++.+. +.+.....+.++++.+
T Consensus 78 ~g~t~l~~A~~~~~--------~--------------------------~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A 123 (241)
T 1k1a_A 78 HGQTAAHLACEHRS--------P--------------------------TCLRALLDSAAPGTLDLEARNYDGLTALHVA 123 (241)
T ss_dssp TSCCHHHHHHHTTC--------H--------------------------HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHcCC--------H--------------------------HHHHHHHHcCCCccccccccCcCCCcHHHHH
Confidence 55555555432110 0 00111222221 1122223344555555
Q ss_pred HHhcChHHHHHHHHHc-CCCCCccc-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHH
Q 005011 346 TLKSKLKEWLLERVVE-GSKTTEYD-VHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVD 423 (719)
Q Consensus 346 a~~~~~~e~lv~~Ll~-ga~in~~d-~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~ 423 (719)
+..++.. ++++|++ |++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 124 ~~~~~~~--~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 201 (241)
T 1k1a_A 124 VNTECQE--TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRT 201 (241)
T ss_dssp HHHTCHH--HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHH
T ss_pred HHcCCHH--HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 5554432 4555555 66666655 556666666666666666666666666666666666666666666666666666
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 005011 424 LLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQAL 468 (719)
Q Consensus 424 Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga 468 (719)
|+++|++++. +|..|.||||+|+..|+.++++.|++.++
T Consensus 202 Ll~~ga~~~~------~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 202 LVRSGADSSL------KNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHHTTCCTTC------CCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred HHhcCCCCCC------cCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 6666666655 55566666666666666666666655543
No 13
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.92 E-value=2.6e-25 Score=242.78 Aligned_cols=241 Identities=14% Similarity=0.129 Sum_probs=186.7
Q ss_pred CCCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEE-eCCCCccchhhccccCCcc--c----------CCCCC
Q 005011 198 LSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMS-LDGHKPISQVLNFEYRSPQ--L----------HAPVA 264 (719)
Q Consensus 198 ~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~-~~g~~~ls~~~~f~y~~~~--~----------~~~~~ 264 (719)
.+.+|+||. |+.+++..|+..++ .. .+ ..|+||||.|+..++.+.+ + .++++
T Consensus 95 ~t~L~~Aa~-~~~~~~~~L~~~~~----------n~----~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v 159 (373)
T 2fo1_E 95 PIKLHTEAA-GSYAITEPITRESV----------NI----IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159 (373)
T ss_dssp CCHHHHHHH-SSSCCCSCCSTTTT----------TT----CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT
T ss_pred ccHHHHHhc-CCchHHHHhccccc----------cc----cCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 367899998 44577777765321 11 12 4688999999998888765 1 25678
Q ss_pred CCCCCCCccHHHHHH-----HHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHh-------cCCC
Q 005011 265 SSEDKSKWEEFQVQM-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSV-------GDKR 332 (719)
Q Consensus 265 ~~~d~~g~t~l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l-------~~~~ 332 (719)
+..|..|+||||+++ .++++|+..+.++++.... ...++..+...+. ..+++.+ .+.+
T Consensus 160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~---------g~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~ 229 (373)
T 2fo1_E 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS---------ERSALHQAAANRD-FGMMVYMLNSTKLKGDIE 229 (373)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT---------CCCHHHHHHHTTC-HHHHHHHTTSHHHHHTTS
T ss_pred cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCC---------CCCHHHHHHHCCC-HHHHHHHHhcCccccChh
Confidence 888999999999974 6889999988776543211 1223333333333 2333333 3444
Q ss_pred CCcccccchHHHHHHhcC--hHHHHHHHHHc-CCCCCc--------ccCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCcc
Q 005011 333 TSLPEAKDSFFELTLKSK--LKEWLLERVVE-GSKTTE--------YDVHGQGVIHLCAMLGYTWAILLFSWSG-LSLDF 400 (719)
Q Consensus 333 ~~~~~~~~~l~~aa~~~~--~~e~lv~~Ll~-ga~in~--------~d~~G~T~LH~Aa~~g~~~~v~~Ll~~G-adin~ 400 (719)
.....+.++++.++..++ ..+ ++++|++ |++++. .|..|.||||+||..|+.++|++|++.| +++|.
T Consensus 230 ~~d~~g~t~L~~A~~~~~~~~~~-~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~ 308 (373)
T 2fo1_E 230 ELDRNGMTALMIVAHNEGRDQVA-SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308 (373)
T ss_dssp CCCTTSCCHHHHHHHSCSTTHHH-HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred hcCCCCCCHHHHHHHhCCcchHH-HHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence 556677888998888763 444 7888888 999886 6779999999999999999999999876 99999
Q ss_pred ccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 005011 401 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA 470 (719)
Q Consensus 401 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~ 470 (719)
+|..|+||||+|+..|+.++|++|+++|++++. +|..|.||||+|+.+|+.+++++|+++|++.
T Consensus 309 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~------~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 309 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA------VDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC------CCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC------CCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 999999999999999999999999999999998 8999999999999999999999999999864
No 14
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.92 E-value=1e-24 Score=220.92 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=128.5
Q ss_pred cccccchHHHHHHhcChHHHHHHHHHc-C-CCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHH
Q 005011 335 LPEAKDSFFELTLKSKLKEWLLERVVE-G-SKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 412 (719)
Q Consensus 335 ~~~~~~~l~~aa~~~~~~e~lv~~Ll~-g-a~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A 412 (719)
...+.++++.++..++.. ++++|++ | .+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|
T Consensus 74 ~~~g~t~L~~A~~~~~~~--~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 151 (237)
T 3b7b_A 74 DAEGSTCLHLAAKKGHYE--VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWA 151 (237)
T ss_dssp CTTSCCHHHHHHHTTCHH--HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCcHHHHHHHcCCHH--HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHH
Confidence 345667888888877754 7888888 6 89999999999999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhh
Q 005011 413 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTIT 492 (719)
Q Consensus 413 a~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~ 492 (719)
+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++.. +..+.||++.
T Consensus 152 ~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~---------d~~g~t~l~~ 216 (237)
T 3b7b_A 152 AFSGCVDIAEILLAAKCDLHA------VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK---------NKEGETPLQC 216 (237)
T ss_dssp HHHCCHHHHHHHHTTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC---------CTTSCCHHHH
T ss_pred HHCCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCcc---------CCCCCCHHHH
Confidence 999999999999999999998 8899999999999999999999999999988543 4456777776
Q ss_pred hhcC
Q 005011 493 VDTQ 496 (719)
Q Consensus 493 ~~~~ 496 (719)
+...
T Consensus 217 A~~~ 220 (237)
T 3b7b_A 217 ASLN 220 (237)
T ss_dssp SCTT
T ss_pred HHHH
Confidence 6443
No 15
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.92 E-value=1.9e-25 Score=238.68 Aligned_cols=247 Identities=13% Similarity=0.066 Sum_probs=183.0
Q ss_pred CCcceEEEcCCchhhHHHhhc-cceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCCcc
Q 005011 199 SKSNMFCVCGEVRVPAEFVQA-GVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSKWE 273 (719)
Q Consensus 199 ~~~~~ac~fG~~ev~~~li~~-Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g~t 273 (719)
+.+++||..|+.+++..++.. |+. ++ ..+..|.||+|.|+..++.+.+ ..+.+++..|..|+|
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~-----~~-------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 93 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVN-----CH-------ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLV 93 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTT-----CC-------CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCC-----cc-------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc
Confidence 468999999999999999864 311 11 1234678999999999888766 245677888999999
Q ss_pred HHHHHH-----HHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhccc---CcHHHHHHHhcCCCCCcccccch----
Q 005011 274 EFQVQM-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCIS---NSWAYLFKSVGDKRTSLPEAKDS---- 341 (719)
Q Consensus 274 ~l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~l~~~~~~~~~~~~~---- 341 (719)
|||+++ .++++|+..+.+++..... ...+++.+... +....|++.+.+.......+.++
T Consensus 94 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~---------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a 164 (351)
T 3utm_A 94 PLHNACSYGHYEVTELLLKHGACVNAMDLW---------QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTT---------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCC---------CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHH
Confidence 999974 6888888887665432211 11223333222 23445555555544444344333
Q ss_pred -----------------HHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCcc
Q 005011 342 -----------------FFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAML---GYTWAILLFSWSGLSLDF 400 (719)
Q Consensus 342 -----------------l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~---g~~~~v~~Ll~~Gadin~ 400 (719)
++.++..++.. .+..++. +......+..|.||||+|+.. +..+++++|+..|+++|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~ 242 (351)
T 3utm_A 165 PTPELRERLTYEFKGHSLLQAAREADLA--KVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE 242 (351)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC
T ss_pred hhhhhHHHHHhhhcccHHHHHHHhccHH--HHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC
Confidence 33444445443 2334444 444444678899999999999 558999999999999999
Q ss_pred ccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Q 005011 401 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND 474 (719)
Q Consensus 401 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~ 474 (719)
+|..|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 243 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~------~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~ 310 (351)
T 3utm_A 243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA------LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC
Confidence 999999999999999999999999999999998 89999999999999999999999999999986544
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.92 E-value=1e-24 Score=224.43 Aligned_cols=207 Identities=15% Similarity=0.141 Sum_probs=148.1
Q ss_pred EeCCCCccchhhccc-------------cCCcc--c--CCCCCC-CCCCCCccHHHHHHHHHHHhhcCCCCcccccCCCC
Q 005011 239 SLDGHKPISQVLNFE-------------YRSPQ--L--HAPVAS-SEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVP 300 (719)
Q Consensus 239 ~~~g~~~ls~~~~f~-------------y~~~~--~--~~~~~~-~~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~ 300 (719)
+..|.||||.|+..+ ..+.+ + .+.+++ ..|..|+||||++++..+ .
T Consensus 7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~--------~-------- 70 (253)
T 1yyh_A 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR--------S-------- 70 (253)
T ss_dssp ---------------------------------------------CCCTTSCCHHHHHHHTTC--------H--------
T ss_pred CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCC--------H--------
Confidence 446777788777654 33333 2 223332 347889999999764310 0
Q ss_pred CCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CC-CCCcccCCCCcHHHH
Q 005011 301 PNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GS-KTTEYDVHGQGVIHL 378 (719)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga-~in~~d~~G~T~LH~ 378 (719)
+..+.|++.+.+.+.....+.++|+.++..++.. ++++|++ |+ +++..|..|.||||+
T Consensus 71 ------------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~~~~~~~~~~~~g~t~L~~ 130 (253)
T 1yyh_A 71 ------------------DAAKRLLEASADANIQDNMGRTPLHAAVSADAQG--VFQILIRNRATDLDARMHDGTTPLIL 130 (253)
T ss_dssp ------------------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH--HHHHHHHSTTSCTTCCCTTCCCHHHH
T ss_pred ------------------HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH--HHHHHHHcCCCCccccCCCCCcHHHH
Confidence 1123334444444444556778899888887754 7888888 66 899999999999999
Q ss_pred HHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 005011 379 CAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDG 458 (719)
Q Consensus 379 Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~ 458 (719)
|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+
T Consensus 131 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~g~tpL~~A~~~~~~~ 204 (253)
T 1yyh_A 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM------QNNREETPLFLAAREGSYE 204 (253)
T ss_dssp HHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHHTCHH
T ss_pred HHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred HHHHHHHcCCCCCccccccccccccccccchhhhhhcC
Q 005011 459 LAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQ 496 (719)
Q Consensus 459 iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 496 (719)
++++|+++|++++.. +..+.+|.+.+...
T Consensus 205 ~v~~Ll~~ga~~~~~---------d~~g~tpl~~A~~~ 233 (253)
T 1yyh_A 205 TAKVLLDHFANRDIT---------DHMDRLPRDIAQER 233 (253)
T ss_dssp HHHHHHHTTCCTTCC---------CTTCCCHHHHHHHT
T ss_pred HHHHHHHcCCCcccc---------ccCCCCHHHHHHHc
Confidence 999999999998543 44567777766443
No 17
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.92 E-value=5.6e-25 Score=244.18 Aligned_cols=247 Identities=14% Similarity=0.178 Sum_probs=187.0
Q ss_pred CCCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc--c--CCCCCCCCCCCCcc
Q 005011 198 LSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ--L--HAPVASSEDKSKWE 273 (719)
Q Consensus 198 ~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~--~--~~~~~~~~d~~g~t 273 (719)
.+++|+||.+|+.++++.|++.|.. +.. .+..|.||+|.|+..++.+.+ + .+.+++..|..|+|
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~-----~~~-------~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 82 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGAS-----PNV-------SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT 82 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC-----SCC-------SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCC-----CCC-------CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3689999999999999999998732 211 124678999999998888766 2 35677888999999
Q ss_pred HHHHHH-----HHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccC---cHHHHHHHhcCCCCCcccccchHHHH
Q 005011 274 EFQVQM-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISN---SWAYLFKSVGDKRTSLPEAKDSFFEL 345 (719)
Q Consensus 274 ~l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~l~~~~~~~~~~~~~l~~a 345 (719)
|||+++ +++++|+..+.+++..... ...++..+...+ ....|++...+.......+.++++.+
T Consensus 83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~---------g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 153 (437)
T 1n11_A 83 PLHCAARIGHTNMVKLLLENNANPNLATTA---------GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCCCTT---------CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCCCCCC---------CCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence 999974 6788898888765432211 112233332222 23444544444444455666778887
Q ss_pred HHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHH
Q 005011 346 TLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDL 424 (719)
Q Consensus 346 a~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~L 424 (719)
+..++.. ++++|++ |++++..+..|.||||+|+..|+.+++++|+.+|++++..+..|+||||+|+..|+.+++++|
T Consensus 154 ~~~g~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 154 AKYGKVR--VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp HHTTCHH--HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHH--HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 7777654 6777777 888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 005011 425 LSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN 473 (719)
Q Consensus 425 l~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~ 473 (719)
+++|++++. .+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 232 l~~g~~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 274 (437)
T 1n11_A 232 LQYGGSANA------ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274 (437)
T ss_dssp HHTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred HHcCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC
Confidence 888888887 7788888888888888888888888888877543
No 18
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.92 E-value=9e-25 Score=226.10 Aligned_cols=214 Identities=13% Similarity=0.080 Sum_probs=102.9
Q ss_pred CCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCCccH
Q 005011 199 SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSKWEE 274 (719)
Q Consensus 199 ~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g~t~ 274 (719)
+++|+||..|+.++++.|++.|.. +. ..+..|.||+|.|+..++.+.+ ..+.+++..|..|+||
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~g~~-----~~-------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 72 (261)
T 2xai_A 5 SPMHEAAIHGHQLSLRNLISQGWA-----VN-------IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 72 (261)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC-----SS-------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCC-----CC-------CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 578999999999999999987621 11 1122444555555544444333 1233344444444454
Q ss_pred HHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHH
Q 005011 275 FQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEW 354 (719)
Q Consensus 275 l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~ 354 (719)
||+++.... . +..+.|++.+.+... ..++.++++.++..++..
T Consensus 73 L~~A~~~~~--------~--------------------------~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~-- 115 (261)
T 2xai_A 73 LFNACVSGS--------W--------------------------DCVNLLLQHGASVQP-ESDLASPIHEAARRGHVE-- 115 (261)
T ss_dssp HHHHHHHTC--------H--------------------------HHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHH--
T ss_pred HHHHHHcCC--------H--------------------------HHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHH--
Confidence 444433210 0 011233333333222 122334444444444332
Q ss_pred HHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCC
Q 005011 355 LLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL 433 (719)
Q Consensus 355 lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~ 433 (719)
++++|++ |++++..|..|.||||+|+..|+.+++++|+++|+++|. |..|+||||+|+..|+.+++++|+++|++++.
T Consensus 116 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~ 194 (261)
T 2xai_A 116 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQA 194 (261)
T ss_dssp HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 3444444 555555555555555555555555555555555555543 44455555555555555555555555555544
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 005011 434 VTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA 470 (719)
Q Consensus 434 ~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~ 470 (719)
+|..|.||||+|+.++ +++++|++++..+
T Consensus 195 ------~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~ 223 (261)
T 2xai_A 195 ------KNAEGKRPVELVPPES--PLAQLFLEREGPP 223 (261)
T ss_dssp ------CCTTSCCGGGGSCTTC--THHHHHHHC-CCC
T ss_pred ------cCCCCCChhhhccccc--cHHHHHHhccCCc
Confidence 4455555555554332 2445555544433
No 19
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=234.29 Aligned_cols=213 Identities=13% Similarity=0.076 Sum_probs=173.9
Q ss_pred ccCCCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCC
Q 005011 196 LHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSK 271 (719)
Q Consensus 196 ~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g 271 (719)
...+++|+||..|+.++++.|++.|.. +-..+..|.||||.|+..++.+.+ ..+.+++..|..|
T Consensus 58 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g 125 (285)
T 3d9h_A 58 SDWSPMHEAAIHGHQLSLRNLISQGWA------------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125 (285)
T ss_dssp CSCCHHHHHHHTTCHHHHHHHHHTTCC------------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTC
T ss_pred cCCCHHHHHHHcCCHHHHHHHHHCCCC------------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC
Confidence 344789999999999999999997721 113456889999999998887766 2456778889999
Q ss_pred ccHHHHHHH-----HHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHH
Q 005011 272 WEEFQVQMR-----LAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELT 346 (719)
Q Consensus 272 ~t~l~l~~r-----l~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa 346 (719)
+||||+++. ++++|+..+. +.... ..+.++++.++
T Consensus 126 ~t~L~~A~~~~~~~~v~~Ll~~g~---------------------------------------~~~~~-~~g~t~L~~A~ 165 (285)
T 3d9h_A 126 HTPLFNACVSGSWDCVNLLLQHGA---------------------------------------SVQPE-SDLASPIHEAA 165 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTC---------------------------------------CSSCS-CTTSCHHHHHH
T ss_pred CCHHHHHHHcCHHHHHHHHHHCCC---------------------------------------CCCCC-CCCCCHHHHHH
Confidence 999999864 4444443332 22211 23567888888
Q ss_pred HhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHH
Q 005011 347 LKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLL 425 (719)
Q Consensus 347 ~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll 425 (719)
..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|++.|++++. |..|+||||+|+..|+.+++++|+
T Consensus 166 ~~g~~~--~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll 242 (285)
T 3d9h_A 166 RRGHVE--CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLM 242 (285)
T ss_dssp HHTCHH--HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHH--HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 888754 7888888 999999999999999999999999999999999999995 899999999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Q 005011 426 SAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ-ALVAQ 471 (719)
Q Consensus 426 ~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~-Ga~~~ 471 (719)
++|++++. +|..|.||||+|+ ++.+++++|+++ |++..
T Consensus 243 ~~gad~~~------~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 243 DFGADTQA------KNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp HTTCCTTC------CCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred HCCCCCCC------cCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 99999998 9999999999999 456899999998 77653
No 20
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.92 E-value=8.6e-25 Score=234.35 Aligned_cols=246 Identities=15% Similarity=0.151 Sum_probs=188.0
Q ss_pred CCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEE-eCCCCccchhhccccCCcc--c--CCCCCCCCCCCCcc
Q 005011 199 SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMS-LDGHKPISQVLNFEYRSPQ--L--HAPVASSEDKSKWE 273 (719)
Q Consensus 199 ~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~-~~g~~~ls~~~~f~y~~~~--~--~~~~~~~~d~~g~t 273 (719)
+.++.||..|++++|+.||+.|+- +.. .+ ..|.||||.|+..++.+.+ + .+++++..+..+.+
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~Gad-----vn~-------~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~ 94 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEGGAN-----VNF-------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 94 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCC-----TTC-------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCC-----CCc-------cCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCc
Confidence 568999999999999999998832 211 11 2478999999999988876 2 46778888999999
Q ss_pred HHHHHH-----HHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhccc---CcHHHHHHHhcCCCCC----------c
Q 005011 274 EFQVQM-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCIS---NSWAYLFKSVGDKRTS----------L 335 (719)
Q Consensus 274 ~l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~l~~~~~~----------~ 335 (719)
+++... .....+...+.+++..... ..+++..+... +....+++.+.+.+.. .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---------g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~ 165 (337)
T 4g8k_A 95 PFILAAIAGSVKLLKLFLSKGADVNECDFY---------GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLR 165 (337)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTCBCTT---------CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CT
T ss_pred hhHHHHhcccchhhHHhhhccchhhhhccC---------CCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccccccccc
Confidence 998863 4555555555544332211 11223232222 2234444444443321 2
Q ss_pred ccccchHHHHHHhcChHHHHHHHHHc--CCCCCcccCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCccccCCCCcHH
Q 005011 336 PEAKDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLGY----TWAILLFSWSGLSLDFRDKYGWTAL 409 (719)
Q Consensus 336 ~~~~~~l~~aa~~~~~~e~lv~~Ll~--ga~in~~d~~G~T~LH~Aa~~g~----~~~v~~Ll~~Gadin~~d~~G~TpL 409 (719)
..+.++||.|+..++.. ++++|++ |+++|.+|..|.|+||+++..+. ..++++|+++|+++|.+|..|+|||
T Consensus 166 ~~g~T~L~~A~~~g~~~--~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L 243 (337)
T 4g8k_A 166 KGGATALMDAAEKGHVE--VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 243 (337)
T ss_dssp TCSCCHHHHHHHHTCHH--HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred CCCCcHHHHHHHCCCHH--HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 23567888888888764 7888875 99999999999999999887654 4688999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 005011 410 HWAAYYGREKMVVDLLSA-GAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN 473 (719)
Q Consensus 410 h~Aa~~G~~~iv~~Ll~~-Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~ 473 (719)
|+|+..|+.+++++|+.. |++++. +|..|.||||+|+..|+.+++++|+++||+++..
T Consensus 244 ~~a~~~~~~~~v~~Ll~~~~~~vn~------~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~ 302 (337)
T 4g8k_A 244 ILAVEKKHLGLVQRLLEQEHIEIND------TDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 302 (337)
T ss_dssp HHHHHTTCHHHHHHHHTSTTCCTTC------BCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC
T ss_pred HHHHHhhhhHHHHHHHHhcCCcccC------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence 999999999999999985 899998 8999999999999999999999999999998643
No 21
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.92 E-value=1.9e-24 Score=217.40 Aligned_cols=203 Identities=16% Similarity=0.153 Sum_probs=163.3
Q ss_pred CCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcccCCCCCCCCCCCCccHHHHH
Q 005011 199 SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQ 278 (719)
Q Consensus 199 ~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~~~~~~~~~~d~~g~t~l~l~ 278 (719)
+++|+||..|+.++++.|++.|.. . .+..|..|+||||++
T Consensus 4 t~L~~A~~~g~~~~v~~Ll~~~~~----------~------------------------------~~~~~~~g~t~L~~A 43 (228)
T 2dzn_A 4 YPLHQACMENEFFKVQELLHSKPS----------L------------------------------LLQKDQDGRIPLHWS 43 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGG----------G------------------------------TTCCCTTSCCHHHHH
T ss_pred cHHHHHHHhCCHHHHHHHHhcCcc----------c------------------------------cccCCCCCCCHHHHH
Confidence 568899999999999999986621 0 011355677888876
Q ss_pred H-----HHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHH
Q 005011 279 M-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKE 353 (719)
Q Consensus 279 ~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e 353 (719)
+ +++++|+..+.+.++.. .....+.++++.++..++..
T Consensus 44 ~~~~~~~~v~~Ll~~~~~~~~~~------------------------------------~~~~~g~t~L~~A~~~~~~~- 86 (228)
T 2dzn_A 44 VSFQAHEITSFLLSKMENVNLDD------------------------------------YPDDSGWTPFHIACSVGNLE- 86 (228)
T ss_dssp HHTTCHHHHHHHHHTCTTCCGGG------------------------------------CCCTTSCCHHHHHHHHCCHH-
T ss_pred HHcCCHHHHHHHHhccccccccc------------------------------------cCCCCCCCHHHHHHHcCCHH-
Confidence 4 45555555543211100 02234667888888887754
Q ss_pred HHHHHHHc-C--CCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCC-C
Q 005011 354 WLLERVVE-G--SKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAG-A 429 (719)
Q Consensus 354 ~lv~~Ll~-g--a~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~G-a 429 (719)
++++|++ | ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.| +
T Consensus 87 -~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 165 (228)
T 2dzn_A 87 -VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165 (228)
T ss_dssp -HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred -HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 7888888 7 899999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccccccccccccccccchhhhhh
Q 005011 430 KPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLS-EQALVAQFNDMTLAGNISGSLQTGSTITVD 494 (719)
Q Consensus 430 ~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll-~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~ 494 (719)
+++. +|..|.||||+|+..|+.+++++|+ ++|++++.. +..+.+|++.+.
T Consensus 166 ~~~~------~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~---------~~~g~t~l~~A~ 216 (228)
T 2dzn_A 166 AVNW------QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV---------DNKGAKAEDVAL 216 (228)
T ss_dssp CSCC------CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCB---------CTTSCBGGGGCS
T ss_pred cccC------cCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCcc---------CCCCCcHHHHHH
Confidence 9998 8999999999999999999999999 899998544 344566766553
No 22
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.92 E-value=7.9e-25 Score=221.30 Aligned_cols=134 Identities=17% Similarity=0.183 Sum_probs=117.5
Q ss_pred ccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccC-------------CCCcHHHHHHHcCCHHHHHHHHHCCCCCccc
Q 005011 336 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDV-------------HGQGVIHLCAMLGYTWAILLFSWSGLSLDFR 401 (719)
Q Consensus 336 ~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~-------------~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~ 401 (719)
..+.++||.|+..++.. ++++|++ |++++..+. .|.||||+|+..|+.+++++|+++|+++|.+
T Consensus 73 ~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 150 (232)
T 2rfa_A 73 YEGQTALHIAVINQNVN--LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ 150 (232)
T ss_dssp TTTCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CCCcCHHHHHHHcCCHH--HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence 45678899988888754 7888888 999998765 7999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHcCcHHHH----HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Q 005011 402 DKYGWTALHWAAYYGREKMV----VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQ 471 (719)
Q Consensus 402 d~~G~TpLh~Aa~~G~~~iv----~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~ 471 (719)
|..|+||||+|+..|+.+++ ++|+++|++++...-.+.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus 151 d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp CTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 99999999999999999988 99999999984211112388999999999999999999999999997654
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.91 E-value=5e-24 Score=216.01 Aligned_cols=205 Identities=15% Similarity=0.102 Sum_probs=164.1
Q ss_pred EEeCCCCccchhhccccCCcc--c------CCCCCCCCCCCCccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhh
Q 005011 238 MSLDGHKPISQVLNFEYRSPQ--L------HAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKK 309 (719)
Q Consensus 238 v~~~g~~~ls~~~~f~y~~~~--~------~~~~~~~~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~ 309 (719)
.+..|.||+|.|+..+..+.+ + ...+++..|..|+||||+++.... .
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--------~----------------- 59 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL--------P----------------- 59 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC--------H-----------------
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCC--------H-----------------
Confidence 345788899999888877654 1 345677778889999998764310 0
Q ss_pred hhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CC----CCCcccCCCCcHHHHHHHcCC
Q 005011 310 FASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GS----KTTEYDVHGQGVIHLCAMLGY 384 (719)
Q Consensus 310 ~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga----~in~~d~~G~T~LH~Aa~~g~ 384 (719)
+....|++.+.+.......+.++++.++..++.. +++.|++ |+ +++..|..|.||||+|+..|+
T Consensus 60 ---------~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~--~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 128 (241)
T 1k1a_A 60 ---------SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPT--CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128 (241)
T ss_dssp ---------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH--HHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ---------HHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH--HHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC
Confidence 1123344444444444556778888888877754 6888887 76 889999999999999999999
Q ss_pred HHHHHHHHHCCCCCcccc-CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 005011 385 TWAILLFSWSGLSLDFRD-KYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 463 (719)
Q Consensus 385 ~~~v~~Ll~~Gadin~~d-~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~L 463 (719)
.+++++|++.|++++..| ..|.||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|
T Consensus 129 ~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~L 202 (241)
T 1k1a_A 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA------QMYSGSSALHSASGRGLLPLVRTL 202 (241)
T ss_dssp HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------BCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999999999 7899999999999999999999999999998 889999999999999999999999
Q ss_pred HHcCCCCCccccccccccccccccchhhhh
Q 005011 464 SEQALVAQFNDMTLAGNISGSLQTGSTITV 493 (719)
Q Consensus 464 l~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~ 493 (719)
+++|++++..+ ..+.||.+.+
T Consensus 203 l~~ga~~~~~~---------~~g~tpl~~A 223 (241)
T 1k1a_A 203 VRSGADSSLKN---------CHNDTPLMVA 223 (241)
T ss_dssp HHTTCCTTCCC---------TTSCCTTTTC
T ss_pred HhcCCCCCCcC---------CCCCCHHHHH
Confidence 99999985443 3456666554
No 24
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.91 E-value=1.2e-24 Score=221.03 Aligned_cols=187 Identities=16% Similarity=0.165 Sum_probs=155.4
Q ss_pred EEeCCCCccchhhccccCCcc--cCC------CCCCCCCCCCccHHHHHHH-----HHHHhhcCCCCcccccCCCCCCCh
Q 005011 238 MSLDGHKPISQVLNFEYRSPQ--LHA------PVASSEDKSKWEEFQVQMR-----LAHLLFSSFKGLNILSSKVPPNSL 304 (719)
Q Consensus 238 v~~~g~~~ls~~~~f~y~~~~--~~~------~~~~~~d~~g~t~l~l~~r-----l~~lL~~~~~~l~i~~~~~~~~~~ 304 (719)
++..|.||||.|+..+..+.+ +.. .+++..|..|+||||+++. ++++|+..+.
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------------- 69 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-------------- 69 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC--------------
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------------
Confidence 467899999999999888766 221 2567788999999999864 4444443332
Q ss_pred HHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCC------CCcccCCCCcHHH
Q 005011 305 KEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSK------TTEYDVHGQGVIH 377 (719)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~------in~~d~~G~T~LH 377 (719)
+.+.....+.++++.++..++.. ++++|++ |++ ++..|..|.||||
T Consensus 70 -------------------------~~~~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~ 122 (236)
T 1ikn_D 70 -------------------------DPELRDFRGNTPLHLACEQGCLA--SVGVLTQSCTTPHLHSILKATNYNGHTCLH 122 (236)
T ss_dssp -------------------------CSCCCCTTCCCHHHHHHHHTCHH--HHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred -------------------------CCCCcCCCCCCHHHHHHHcCCHH--HHHHHHhcccchhHHHHhhccCCCCCCHHH
Confidence 22223345678899988888764 7888888 765 5678889999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCccccC-CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCC
Q 005011 378 LCAMLGYTWAILLFSWSGLSLDFRDK-YGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGF 456 (719)
Q Consensus 378 ~Aa~~g~~~~v~~Ll~~Gadin~~d~-~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~ 456 (719)
+|+..|+.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+
T Consensus 123 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~g~tpl~~A~~~~~ 196 (236)
T 1ikn_D 123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR------VTYQGYSPYQLTWGRPS 196 (236)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCC------CCTTCCCGGGGCTTSSC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------ccCCCCCHHHHHHccCc
Confidence 99999999999999999999999998 999999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHcCCCCC
Q 005011 457 DGLAAFLSEQALVAQ 471 (719)
Q Consensus 457 ~~iv~~Ll~~Ga~~~ 471 (719)
.+++++|+++|+++.
T Consensus 197 ~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 197 TRIQQQLGQLTLENL 211 (236)
T ss_dssp HHHHHHHHTTSCGGG
T ss_pred hHHHHHHHHcchhhh
Confidence 999999999999774
No 25
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.91 E-value=5.5e-24 Score=206.62 Aligned_cols=141 Identities=21% Similarity=0.250 Sum_probs=128.3
Q ss_pred cchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCc
Q 005011 339 KDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGR 417 (719)
Q Consensus 339 ~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~ 417 (719)
.++|+.||..++.. +++.|++ |+++|.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus 5 g~~L~~Aa~~G~~~--~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 5 GKRLIEAAENGNKD--RVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHH--HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence 45788888888865 6888888 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhcC
Q 005011 418 EKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQ 496 (719)
Q Consensus 418 ~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 496 (719)
.++|++|+++|++++. +|..|+||||+|+..|+.+++++|+++|++++.. +..+.||++.+...
T Consensus 83 ~~~v~~Ll~~gadvn~------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~---------d~~G~TpL~~A~~~ 146 (169)
T 4gpm_A 83 KEVVKLLISKGADVNA------KDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS---------DSDGRTPLDLAREH 146 (169)
T ss_dssp HHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---------CTTSCCHHHHHHHT
T ss_pred HHHHHHHHHCcCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc---------CCCCCCHHHHHHHc
Confidence 9999999999999998 8999999999999999999999999999998544 34467887766443
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.91 E-value=4.8e-24 Score=215.14 Aligned_cols=203 Identities=16% Similarity=0.112 Sum_probs=163.7
Q ss_pred eCCCCccchhhccccCCcc--c---CCCCCCCCCCCCccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhh
Q 005011 240 LDGHKPISQVLNFEYRSPQ--L---HAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKS 314 (719)
Q Consensus 240 ~~g~~~ls~~~~f~y~~~~--~---~~~~~~~~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~ 314 (719)
|.+.+|++.|+..+..+.+ + .....+..|..|+||||+++...++
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~------------------------------ 53 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHT------------------------------ 53 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCH------------------------------
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcH------------------------------
Confidence 4567889998888776654 1 1223456688899999998654210
Q ss_pred hcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHH
Q 005011 315 TCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW 393 (719)
Q Consensus 315 ~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~ 393 (719)
+..+.|++.+.+.+.....+.++++.++..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|++
T Consensus 54 ----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 54 ----EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE--IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127 (231)
T ss_dssp ----HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHH--HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 1112333333344444456778898888887754 7888888 99999999999999999999999999999999
Q ss_pred CCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 005011 394 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN 473 (719)
Q Consensus 394 ~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~ 473 (719)
.|++++.+|..|.||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 128 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 201 (231)
T 3aji_A 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI------QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201 (231)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc------cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC
Confidence 9999999999999999999999999999999999999998 8999999999999999999999999999998543
Q ss_pred ccccccccccccccchhhhh
Q 005011 474 DMTLAGNISGSLQTGSTITV 493 (719)
Q Consensus 474 ~~~l~~~~~~~~~~~~~~~~ 493 (719)
+..+.+|.+.+
T Consensus 202 ---------~~~g~t~l~~A 212 (231)
T 3aji_A 202 ---------NKEEKTPLQVA 212 (231)
T ss_dssp ---------CTTSCCHHHHS
T ss_pred ---------CCCCCCHHHHH
Confidence 34456676655
No 27
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=219.79 Aligned_cols=156 Identities=18% Similarity=0.116 Sum_probs=136.9
Q ss_pred HHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc
Q 005011 322 AYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF 400 (719)
Q Consensus 322 ~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~ 400 (719)
..|+..+.+.+....++.+|||.||..++.. ++++|++ |++++..+..|.||||+|+..++.+++++|++.|+++|.
T Consensus 70 ~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~--~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~ 147 (269)
T 4b93_B 70 AKVPASGLGVNVTSQDGSSPLHVAALHGRAD--LIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK 147 (269)
T ss_dssp -----CCCCTTCCCTTSCCHHHHHHHTTCTT--HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH--HHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCC
Confidence 4455556666666777889999999988864 7888888 999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc
Q 005011 401 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGN 480 (719)
Q Consensus 401 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~ 480 (719)
+|..|+||||+||..|+.++|++|+++|++++. ++..|.||||+|+..|+.+++++|+++|++++..
T Consensus 148 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~------- 214 (269)
T 4b93_B 148 KDLSGNTPLIYACSGGHHELVALLLQHGASINA------SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL------- 214 (269)
T ss_dssp CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTC------BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC-------
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCc------cccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc-------
Confidence 999999999999999999999999999999998 8999999999999999999999999999998544
Q ss_pred cccccccchhhhhh
Q 005011 481 ISGSLQTGSTITVD 494 (719)
Q Consensus 481 ~~~~~~~~~~~~~~ 494 (719)
+..+.||++.+.
T Consensus 215 --d~~G~TpL~~A~ 226 (269)
T 4b93_B 215 --NKRQRTAVDCAE 226 (269)
T ss_dssp --CTTSCCSGGGSC
T ss_pred --CCCCCCHHHHHH
Confidence 445677877664
No 28
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.91 E-value=5.3e-24 Score=227.50 Aligned_cols=247 Identities=17% Similarity=0.181 Sum_probs=185.3
Q ss_pred CCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCCccH
Q 005011 199 SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSKWEE 274 (719)
Q Consensus 199 ~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g~t~ 274 (719)
+++|+||.+|+.++++.|++.|.. +. ..+..|.||+|.|+..++.+.+ ..+.+++..|..|+||
T Consensus 60 t~L~~A~~~g~~~~v~~Ll~~g~~-----~~-------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~ 127 (351)
T 3utm_A 60 TPLHLAAGYNRVRIVQLLLQHGAD-----VH-------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-----TT-------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-----CC-------ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 679999999999999999998732 11 1235788999999999888766 2456777889999999
Q ss_pred HHHHH-----HHHHHhhcCCCCcccccCCCCCCChHH-------------HhhhhhhhhcccCcHHHHHHHhcCCCC---
Q 005011 275 FQVQM-----RLAHLLFSSFKGLNILSSKVPPNSLKE-------------AKKFASKSTCISNSWAYLFKSVGDKRT--- 333 (719)
Q Consensus 275 l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~li~~l~~~~~--- 333 (719)
||+++ .++++|+..+.+.+....... ....- .................+...+.....
T Consensus 128 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (351)
T 3utm_A 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGK-SAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccCCCC-cchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccccc
Confidence 99974 688999998876654332111 00000 000011111122334444444333222
Q ss_pred CcccccchHHHHHHhcC--hHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHH
Q 005011 334 SLPEAKDSFFELTLKSK--LKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALH 410 (719)
Q Consensus 334 ~~~~~~~~l~~aa~~~~--~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh 410 (719)
....+.++++.++..+. ..+ ++++|++ |++++.+|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||
T Consensus 207 ~~~~~~t~L~~A~~~~~~~~~~-~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~ 285 (351)
T 3utm_A 207 QPQSHETALHCAVASLHPKRKQ-VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285 (351)
T ss_dssp CTTTCCCHHHHHHHCCSTTHHH-HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCCCCCHHHHHHHHhCccHHH-HHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 23445677887777643 234 7888888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 005011 411 WAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 469 (719)
Q Consensus 411 ~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~ 469 (719)
+|+..|+.++|++|+++|++++. +|..|.||+|+| +.+++++|.+.+..
T Consensus 286 ~A~~~~~~~~v~~Ll~~gad~~~------~~~~g~tal~~a----~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 286 RAALAGHLQTCRLLLSYGSDPSI------ISLQGFTAAQMG----NEAVQQILSESTPM 334 (351)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred HHHHcCcHHHHHHHHHcCCCCCC------cCCCCCChhhhh----hHHHHHHHHhcccc
Confidence 99999999999999999999998 899999999997 67899999988753
No 29
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.91 E-value=3.4e-24 Score=216.32 Aligned_cols=222 Identities=18% Similarity=0.119 Sum_probs=171.1
Q ss_pred CCCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc--c--CCCCCC-CCCCCCc
Q 005011 198 LSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ--L--HAPVAS-SEDKSKW 272 (719)
Q Consensus 198 ~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~--~--~~~~~~-~~d~~g~ 272 (719)
.+.+++||..|+.++++.|++.|.. +.. .+..|.||+|.|+..+..+.+ + .....+ ..+..|+
T Consensus 10 ~~~l~~A~~~g~~~~~~~Ll~~g~~-----~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 77 (240)
T 3eu9_A 10 TWDIVKATQYGIYERCRELVEAGYD-----VRQ-------PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS 77 (240)
T ss_dssp GCCHHHHHHTTCHHHHHHHHHTTCC-----TTC-------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTB
T ss_pred chHHHHHHHcCChHHHHHHHHcCCC-----cCC-------CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCC
Confidence 3678999999999999999998732 111 234677888888887776655 1 233333 2345588
Q ss_pred cHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChH
Q 005011 273 EEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLK 352 (719)
Q Consensus 273 t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~ 352 (719)
||||++++... . +....|++.+.+.......+.++++.++..++..
T Consensus 78 t~L~~A~~~~~--------~--------------------------~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 123 (240)
T 3eu9_A 78 TPLHWATRQGH--------L--------------------------SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123 (240)
T ss_dssp CHHHHHHHHTC--------H--------------------------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred ChhHHHHHcCC--------H--------------------------HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH
Confidence 99888765321 0 1123344444444444455678888888877754
Q ss_pred HHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCC-HHHHHHHHHCCCCCccccC-CCCcHHHHHHHcCcHHHHHHHHHCCC
Q 005011 353 EWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGY-TWAILLFSWSGLSLDFRDK-YGWTALHWAAYYGREKMVVDLLSAGA 429 (719)
Q Consensus 353 e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~-~~~v~~Ll~~Gadin~~d~-~G~TpLh~Aa~~G~~~iv~~Ll~~Ga 429 (719)
++++|++ |++++..|..|.||||+|+..++ .+++++|+..|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 124 --~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 124 --IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201 (240)
T ss_dssp --HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred --HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 7888888 99999999999999999997776 8999999999999999997 89999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 005011 430 KPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN 473 (719)
Q Consensus 430 ~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~ 473 (719)
+++. +|..|.||||+|+..|+.+++++|+++|++..+.
T Consensus 202 ~~~~------~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 202 NVDA------QNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp CTTC------BCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred CCCC------cCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
Confidence 9998 8899999999999999999999999999877554
No 30
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.90 E-value=3.2e-24 Score=220.59 Aligned_cols=190 Identities=16% Similarity=0.110 Sum_probs=152.9
Q ss_pred CCCccchhhccccCCcc---c-----CCCCCCC----CCCCCccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhh
Q 005011 242 GHKPISQVLNFEYRSPQ---L-----HAPVASS----EDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKK 309 (719)
Q Consensus 242 g~~~ls~~~~f~y~~~~---~-----~~~~~~~----~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~ 309 (719)
|+||||.|+..+..+.+ + .+.+++. .|..|+||||+++... ..++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~-----~~g~~----------------- 59 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNL-----QDGVN----------------- 59 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTC-----BTTBC-----------------
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHcc-----ccchH-----------------
Confidence 56789999888888754 1 3566776 7899999999987640 00001
Q ss_pred hhhhhhcccCcHHHHHHHhcCCC-----------CCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCC------
Q 005011 310 FASKSTCISNSWAYLFKSVGDKR-----------TSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVH------ 371 (719)
Q Consensus 310 ~~~~~~~~~~~~~~li~~l~~~~-----------~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~------ 371 (719)
+..+.|++.+.+.+ .....+.++||.|+..++.. ++++|++ |++++..|..
T Consensus 60 ---------~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~--~v~~Ll~~ga~~~~~~~~~~~~~~ 128 (256)
T 2etb_A 60 ---------ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQ--CVKLLVENGADVHLRACGRFFQKH 128 (256)
T ss_dssp ---------TTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCCSGGGSCC
T ss_pred ---------HHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHH--HHHHHHHcCCCCCccccccccccc
Confidence 11223333322221 11235778899988888754 7888988 9999999886
Q ss_pred -------CCcHHHHHHHcCCHHHHHHHHH---CCCCCccccCCCCcHHHHHHH--cCcHH-------HHHHHHHCCCCC-
Q 005011 372 -------GQGVIHLCAMLGYTWAILLFSW---SGLSLDFRDKYGWTALHWAAY--YGREK-------MVVDLLSAGAKP- 431 (719)
Q Consensus 372 -------G~T~LH~Aa~~g~~~~v~~Ll~---~Gadin~~d~~G~TpLh~Aa~--~G~~~-------iv~~Ll~~Ga~~- 431 (719)
|.||||+|+..|+.+++++|++ +|+++|.+|..|+||||+|+. .++.+ ++++|+++|+++
T Consensus 129 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~ 208 (256)
T 2etb_A 129 QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208 (256)
T ss_dssp SSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999 999999999999999999999 88888 999999999999
Q ss_pred ------CCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 005011 432 ------NLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA 470 (719)
Q Consensus 432 ------~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~ 470 (719)
+. +|..|.||||+|+..|+.+++++|+++|++.
T Consensus 209 ~~~~~~~~------~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 209 PTVQLEEI------SNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp TTCCGGGC------CCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccc------cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 66 8999999999999999999999999999754
No 31
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.90 E-value=3.6e-24 Score=222.59 Aligned_cols=205 Identities=16% Similarity=0.155 Sum_probs=154.5
Q ss_pred EEeCCCCccchhhccccCCcc--c------CCCCCC----CCCCCCccHHHHHHH--------HHHHhhcCCCCcccccC
Q 005011 238 MSLDGHKPISQVLNFEYRSPQ--L------HAPVAS----SEDKSKWEEFQVQMR--------LAHLLFSSFKGLNILSS 297 (719)
Q Consensus 238 v~~~g~~~ls~~~~f~y~~~~--~------~~~~~~----~~d~~g~t~l~l~~r--------l~~lL~~~~~~l~i~~~ 297 (719)
.+..|.||||.|+..+..+.+ + ....++ ..|..|+||||+++. ++++|+..+++.+
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~---- 84 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD---- 84 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT----
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc----
Confidence 456788999999999888876 1 122332 347899999999874 4455544332111
Q ss_pred CCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccC------
Q 005011 298 KVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDV------ 370 (719)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~------ 370 (719)
....++.. ........+.++||.|+..++.. ++++|++ |++++..+.
T Consensus 85 ----------------------~~~~~i~~--~~~~~d~~g~tpL~~A~~~g~~~--~v~~Ll~~ga~~~~~~~~~~~~~ 138 (273)
T 2pnn_A 85 ----------------------SLKQFVNA--SYTDSYYKGQTALHIAIERRNMT--LVTLLVENGADVQAAANGDFFKK 138 (273)
T ss_dssp ----------------------CHHHHHTC--CCCSTTTTTCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCBCSGGGSS
T ss_pred ----------------------chhHHhhc--ccccccCCCCCHHHHHHHcCCHH--HHHHHHHCCCCcCcccccccccc
Confidence 11111110 00112235778899988888754 7899998 999999987
Q ss_pred --------CCCcHHHHHHHcCCHHHHHHHHH---CCCCCccccCCCCcHHHHHHHcCc---------HHHHHHHHHCCCC
Q 005011 371 --------HGQGVIHLCAMLGYTWAILLFSW---SGLSLDFRDKYGWTALHWAAYYGR---------EKMVVDLLSAGAK 430 (719)
Q Consensus 371 --------~G~T~LH~Aa~~g~~~~v~~Ll~---~Gadin~~d~~G~TpLh~Aa~~G~---------~~iv~~Ll~~Ga~ 430 (719)
.|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+ .+++++|+++|++
T Consensus 139 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~ 218 (273)
T 2pnn_A 139 TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218 (273)
T ss_dssp CSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh
Confidence 79999999999999999999999 999999999999999999999998 8999999999999
Q ss_pred CCCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCc
Q 005011 431 PNLVTD-PTSQNPGGLNAADIASKKGFDGLAAFLSEQAL-VAQF 472 (719)
Q Consensus 431 ~~~~td-~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga-~~~~ 472 (719)
++...+ .+.+|..|.||||+|+..|+.+++++|+++|+ |+..
T Consensus 219 ~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~ 262 (273)
T 2pnn_A 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPEC 262 (273)
T ss_dssp HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC----
T ss_pred cccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh
Confidence 973110 01278999999999999999999999999999 6643
No 32
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.90 E-value=2e-23 Score=205.97 Aligned_cols=186 Identities=16% Similarity=0.196 Sum_probs=153.3
Q ss_pred eCCCCccchhhccccCCcc---c-C-CCCCCCCCCCCccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhh
Q 005011 240 LDGHKPISQVLNFEYRSPQ---L-H-APVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKS 314 (719)
Q Consensus 240 ~~g~~~ls~~~~f~y~~~~---~-~-~~~~~~~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~ 314 (719)
..+.+|++.|+..+..+.+ + . ..+++..|.+|+||||++++..+ +
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~--------~---------------------- 52 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND--------I---------------------- 52 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC--------H----------------------
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC--------H----------------------
Confidence 3466788888887777655 1 2 23677788899999999865421 0
Q ss_pred hcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc--CCCCCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 005011 315 TCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLGYTWAILLFS 392 (719)
Q Consensus 315 ~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~--ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll 392 (719)
+..+.|++.+.+.+.....+.++++.++..++.. ++++|++ +++++..|..|.||||+|+..|+.+++++|+
T Consensus 53 ----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~--~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 126 (201)
T 3hra_A 53 ----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTE--ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126 (201)
T ss_dssp ----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH--HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH--HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Confidence 1123344444444555556778899888888754 7888884 7899999999999999999999999999999
Q ss_pred HCC-CCCccccCCCCcHHHHHHHcCc-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 005011 393 WSG-LSLDFRDKYGWTALHWAAYYGR-----EKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ 466 (719)
Q Consensus 393 ~~G-adin~~d~~G~TpLh~Aa~~G~-----~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~ 466 (719)
+.| ++++.+|..|+||||+|+..|+ .+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++
T Consensus 127 ~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~------~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI------KDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc------cCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 999 9999999999999999999998 9999999999999998 899999999999999999999999998
Q ss_pred C
Q 005011 467 A 467 (719)
Q Consensus 467 G 467 (719)
|
T Consensus 201 G 201 (201)
T 3hra_A 201 N 201 (201)
T ss_dssp C
T ss_pred C
Confidence 7
No 33
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.90 E-value=3.4e-23 Score=203.61 Aligned_cols=162 Identities=21% Similarity=0.251 Sum_probs=142.7
Q ss_pred CCCCCCCCccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHH
Q 005011 264 ASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFF 343 (719)
Q Consensus 264 ~~~~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~ 343 (719)
.+..|..|+||||+++.... . +....|++.+.+.+.....+.+++|
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~--------~--------------------------~~v~~Ll~~~~~~~~~~~~g~t~L~ 73 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGM--------E--------------------------NAIDKLVENFDKLEDKDIEGSTALI 73 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTC--------G--------------------------GGHHHHHHHHCCTTCCCTTSCCHHH
T ss_pred HhCcCCCCCCHHHHHHHcCC--------H--------------------------HHHHHHHHhccccccccccCccHHH
Confidence 45678899999999877631 1 2235566666666666667888999
Q ss_pred HHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHH
Q 005011 344 ELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVV 422 (719)
Q Consensus 344 ~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~ 422 (719)
.++..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus 74 ~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 151 (192)
T 2rfm_A 74 WAVKNNRLG--IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151 (192)
T ss_dssp HHHHTTCHH--HHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHH--HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 998888754 7888888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 005011 423 DLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 467 (719)
Q Consensus 423 ~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~G 467 (719)
+|+++|++++. +|..|.||||+|+..|+.+++++|+++|
T Consensus 152 ~Ll~~ga~~~~------~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 152 KLLELGADISA------RDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHTTCCTTC------BCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCCCCC------cCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 99999999998 8999999999999999999999999875
No 34
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.89 E-value=1.7e-22 Score=220.38 Aligned_cols=248 Identities=13% Similarity=0.130 Sum_probs=175.0
Q ss_pred EEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc--cCCCCCCCCC-CCCccHHHHHHH
Q 005011 204 FCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ--LHAPVASSED-KSKWEEFQVQMR 280 (719)
Q Consensus 204 ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~--~~~~~~~~~d-~~g~t~l~l~~r 280 (719)
+...|+.+++..++... ....|.||+|.|+...+ +.+ +....++..| ..|+||||+++.
T Consensus 73 ~~~~g~~~~~~~~~~~~-----------------~~~~g~t~L~~Aa~~~~-~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~ 134 (373)
T 2fo1_E 73 NDFLGDFNHTNLQIPTE-----------------PEPESPIKLHTEAAGSY-AITEPITRESVNIIDPRHNRTVLHWIAS 134 (373)
T ss_dssp --------------------------------------CCCHHHHHHHSSS-CCCSCCSTTTTTTCCCSSCCCHHHHHHC
T ss_pred CCccccccccccccccC-----------------CCCCCccHHHHHhcCCc-hHHHHhccccccccCCcCCCCHHHHHHH
Confidence 44557777776655421 23467788998887554 333 3445677777 789999999753
Q ss_pred -------------HHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhccc---CcHHHHHHHhcCCCCCcccccchHHH
Q 005011 281 -------------LAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCIS---NSWAYLFKSVGDKRTSLPEAKDSFFE 344 (719)
Q Consensus 281 -------------l~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~l~~~~~~~~~~~~~l~~ 344 (719)
.++.|+..+.+++.... ...++++.+... +....|++.+.+.+.....+.++++.
T Consensus 135 ~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~---------~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~ 205 (373)
T 2fo1_E 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDC---------DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ 205 (373)
T ss_dssp TTCCSCCTTHHHHHHHHHHHTCCCTTCCCT---------TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcCCCC---------CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHH
Confidence 22334456655543221 112334333332 34566676667767667778889999
Q ss_pred HHHhcChHHHHHHHHHc-C---CCCCcccCCCCcHHHHHHHcC---CHHHHHHHHHCCCCCcc--------ccCCCCcHH
Q 005011 345 LTLKSKLKEWLLERVVE-G---SKTTEYDVHGQGVIHLCAMLG---YTWAILLFSWSGLSLDF--------RDKYGWTAL 409 (719)
Q Consensus 345 aa~~~~~~e~lv~~Ll~-g---a~in~~d~~G~T~LH~Aa~~g---~~~~v~~Ll~~Gadin~--------~d~~G~TpL 409 (719)
|+..++.. ++++|++ | ++++..|..|.||||+|+..| +.+++++|+++|++++. .|..|+|||
T Consensus 206 A~~~g~~~--~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~L 283 (373)
T 2fo1_E 206 AAANRDFG--MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283 (373)
T ss_dssp HHHTTCHH--HHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred HHHCCCHH--HHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHH
Confidence 98888754 7888888 6 799999999999999999998 89999999999999986 677899999
Q ss_pred HHHHHcCcHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccc
Q 005011 410 HWAAYYGREKMVVDLLSAG-AKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTG 488 (719)
Q Consensus 410 h~Aa~~G~~~iv~~Ll~~G-a~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~ 488 (719)
|+|+..|+.++|++|++.| ++++. +|..|.||||+|+..|+.+++++|+++|++++..+ ..+.+
T Consensus 284 h~A~~~g~~~~v~~Ll~~~~~~~n~------~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d---------~~g~t 348 (373)
T 2fo1_E 284 HYAAQVSNMPIVKYLVGEKGSNKDK------QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD---------ATDHT 348 (373)
T ss_dssp HHHHSSCCHHHHHHHHHHSCCCTTC------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC---------SSSCC
T ss_pred HHHHHhCCHHHHHHHHHhcCCCccC------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCC---------CCCCC
Confidence 9999999999999999876 99998 89999999999999999999999999999985543 34567
Q ss_pred hhhhhhc
Q 005011 489 STITVDT 495 (719)
Q Consensus 489 ~~~~~~~ 495 (719)
|++.+..
T Consensus 349 ~l~~A~~ 355 (373)
T 2fo1_E 349 ARQLAQA 355 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 35
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.89 E-value=1.4e-23 Score=227.37 Aligned_cols=211 Identities=15% Similarity=0.126 Sum_probs=161.9
Q ss_pred cceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCCccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHh
Q 005011 233 LFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAK 308 (719)
Q Consensus 233 ~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~ 308 (719)
..+...+..|.||||.|+..++.+.+ ..+++++..|..|+||||++++..+ +
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~--------~---------------- 66 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGC--------V---------------- 66 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCC--------H----------------
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC--------H----------------
Confidence 33334455677888888888877765 2355677778888888888764321 0
Q ss_pred hhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-----CCCCCc----------------
Q 005011 309 KFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-----GSKTTE---------------- 367 (719)
Q Consensus 309 ~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-----ga~in~---------------- 367 (719)
+....|++.+.+ ....++.++++.|+..++.. ++++|++ |++++.
T Consensus 67 ----------~~v~~Ll~~g~~--~~~~~g~t~L~~A~~~g~~~--~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (364)
T 3ljn_A 67 ----------DTAKYLASVGEV--HSLWHGQKPIHLAVMANKTD--LVVALVEGAKERGQMPESLLNECDEREVNEIGSH 132 (364)
T ss_dssp ----------HHHHHHHHHCCC--CCCBTTBCHHHHHHHTTCHH--HHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTE
T ss_pred ----------HHHHHHHHCCCC--ccccCCCCHHHHHHHcCCHH--HHHHHHHhccccCCCHHHHHhhcchHhhhhhccc
Confidence 112333333332 22235678888888887754 5676665 777776
Q ss_pred -ccCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCC-----CCCCCCCCC
Q 005011 368 -YDVHGQGVIHLCAMLG--YTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAK-----PNLVTDPTS 439 (719)
Q Consensus 368 -~d~~G~T~LH~Aa~~g--~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~-----~~~~td~~~ 439 (719)
.|..|.||||+|+..| +.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++ ++.
T Consensus 133 ~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~------ 206 (364)
T 3ljn_A 133 VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY------ 206 (364)
T ss_dssp EEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC------
T ss_pred cCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc------
Confidence 8889999999999999 99999999999999999999999999999999999999999999999 666
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhcC
Q 005011 440 QNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQ 496 (719)
Q Consensus 440 ~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 496 (719)
.|..|.||||+|+..|+.+++++|+++|++++.. +..+.||++.+...
T Consensus 207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~---------d~~g~tpL~~A~~~ 254 (364)
T 3ljn_A 207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME---------DNEHTVPLYLSVRA 254 (364)
T ss_dssp CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCC---------CTTSCCHHHHHHHT
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC---------CCCCCCHHHHHHHh
Confidence 8999999999999999999999999999998544 34566777765443
No 36
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.89 E-value=1.2e-22 Score=210.55 Aligned_cols=145 Identities=16% Similarity=0.093 Sum_probs=127.0
Q ss_pred CcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCC---------------
Q 005011 334 SLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLS--------------- 397 (719)
Q Consensus 334 ~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gad--------------- 397 (719)
....+.++||.|+..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+.+|++
T Consensus 41 ~~~~g~t~L~~A~~~g~~~--~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 118 (282)
T 1oy3_D 41 QNDLGQTALHLAAILGEAS--TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118 (282)
T ss_dssp CCTTSCCHHHHHHHHTCHH--HHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred cCCCCCCHHHHHHHcCCHH--HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccc
Confidence 3455778999999888764 7888888 999999999999999999999999999999998865
Q ss_pred --------------------------------CccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCC-CC
Q 005011 398 --------------------------------LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNP-GG 444 (719)
Q Consensus 398 --------------------------------in~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~-~G 444 (719)
++.+|..|+||||+|+..|+.+++++|+++|++++. .+. .|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~~g 192 (282)
T 1oy3_D 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK------PEPTCG 192 (282)
T ss_dssp -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC------CCTTTC
T ss_pred cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCC
Confidence 778899999999999999999999999999999998 664 59
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhc
Q 005011 445 LNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 445 ~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
.||||+|+..|+.+++++|+++|++++..+ ..+.||++.+..
T Consensus 193 ~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d---------~~g~tpL~~A~~ 234 (282)
T 1oy3_D 193 RTPLHLAVEAQAASVLELLLKAGADPTARM---------YGGRTPLGSALL 234 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------TTSCCHHHHHHT
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCCCcccc---------cCCCCHHHHHHH
Confidence 999999999999999999999999986543 345677665543
No 37
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.89 E-value=2.2e-23 Score=218.70 Aligned_cols=199 Identities=14% Similarity=0.118 Sum_probs=156.8
Q ss_pred CCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcccCCCCCCCCCCCCccHHHHH
Q 005011 199 SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQ 278 (719)
Q Consensus 199 ~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~~~~~~~~~~d~~g~t~l~l~ 278 (719)
+.+++||..|+.+++..|++.|. +++..|..|+||||++
T Consensus 42 t~l~~A~~~g~~~~v~~Ll~~g~-----------------------------------------~~~~~~~~g~t~L~~A 80 (299)
T 1s70_B 42 AVFLAACSSGDTEEVLRLLERGA-----------------------------------------DINYANVDGLTALHQA 80 (299)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHCC-----------------------------------------CTTCBCTTCCBHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCC-----------------------------------------CCcccCCCCCCHHHHH
Confidence 46889999999999999999772 1122355677888876
Q ss_pred HH-----HHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHH
Q 005011 279 MR-----LAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKE 353 (719)
Q Consensus 279 ~r-----l~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e 353 (719)
+. ++++|+..+ .+.+.....+.++||.|+..++..
T Consensus 81 ~~~g~~~~v~~Ll~~g---------------------------------------a~~~~~~~~g~tpL~~A~~~g~~~- 120 (299)
T 1s70_B 81 CIDDNVDMVKFLVENG---------------------------------------ANINQPDNEGWIPLHAAASCGYLD- 120 (299)
T ss_dssp HHTTCHHHHHHHHHTT---------------------------------------CCTTCCCTTSCCHHHHHHHHTCHH-
T ss_pred HHcCCHHHHHHHHHCC---------------------------------------CCCCCCCCCCCcHHHHHHHcCCHH-
Confidence 53 444444333 333334455778888888888754
Q ss_pred HHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCc--------------------------cccCCC
Q 005011 354 WLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW-SGLSLD--------------------------FRDKYG 405 (719)
Q Consensus 354 ~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~-~Gadin--------------------------~~d~~G 405 (719)
++++|++ |++++..|..|.||||+|+..|+.++++.|+. .|++++ ..+..|
T Consensus 121 -~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 199 (299)
T 1s70_B 121 -IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199 (299)
T ss_dssp -HHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred -HHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCC
Confidence 7888888 99999999999999999999999999887664 455443 356789
Q ss_pred CcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccc
Q 005011 406 WTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSL 485 (719)
Q Consensus 406 ~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~ 485 (719)
.||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++.. +..
T Consensus 200 ~t~L~~A~~~g~~~~v~~Ll~~g~d~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~---------d~~ 264 (299)
T 1s70_B 200 GTALHVAAAKGYTEVLKLLIQARYDVNI------KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV---------NKV 264 (299)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---------CTT
T ss_pred CCHHHHHHHCCcHHHHHHHHHcCCCCCC------cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc---------CCC
Confidence 9999999999999999999999999998 8999999999999999999999999999988543 344
Q ss_pred ccchhhhhh
Q 005011 486 QTGSTITVD 494 (719)
Q Consensus 486 ~~~~~~~~~ 494 (719)
+.||++.+.
T Consensus 265 g~t~l~~A~ 273 (299)
T 1s70_B 265 GQTAFDVAD 273 (299)
T ss_dssp SCCTTTSCC
T ss_pred CCCHHHHHH
Confidence 566666553
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.89 E-value=4.6e-22 Score=199.49 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=131.9
Q ss_pred HHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CC-CCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc
Q 005011 324 LFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GS-KTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFR 401 (719)
Q Consensus 324 li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga-~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~ 401 (719)
|++.+.+.+.....+.++++.|+..++.. ++++|++ ++ +++..+..|.||||+|+..|+.+++++|++.|++++.+
T Consensus 44 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 121 (223)
T 2f8y_A 44 LLEASADANIQDNMGRTPLHAAVSADAQG--VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121 (223)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHH--HHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHH--HHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc
Confidence 33333444444456778888888887754 7888887 65 89999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccc
Q 005011 402 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNI 481 (719)
Q Consensus 402 d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~ 481 (719)
|..|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 122 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~------- 188 (223)
T 2f8y_A 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDM------QNNREETPLFLAAREGSYETAKVLLDHFANRDITD------- 188 (223)
T ss_dssp CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-------
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc-------
Confidence 99999999999999999999999999999998 89999999999999999999999999999885443
Q ss_pred ccccccchhhhhh
Q 005011 482 SGSLQTGSTITVD 494 (719)
Q Consensus 482 ~~~~~~~~~~~~~ 494 (719)
..+.+|.+.+.
T Consensus 189 --~~g~t~l~~A~ 199 (223)
T 2f8y_A 189 --HMDRLPRDIAQ 199 (223)
T ss_dssp --TTCCCHHHHHH
T ss_pred --ccCCCHHHHHH
Confidence 33566666553
No 39
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.89 E-value=1.1e-23 Score=216.76 Aligned_cols=200 Identities=16% Similarity=0.100 Sum_probs=149.9
Q ss_pred CCCCccchhhccccCCcc---c-----CCCCCCCC----CCCCccHHHHHH--------HHHHHhhcCCCCcccccCCCC
Q 005011 241 DGHKPISQVLNFEYRSPQ---L-----HAPVASSE----DKSKWEEFQVQM--------RLAHLLFSSFKGLNILSSKVP 300 (719)
Q Consensus 241 ~g~~~ls~~~~f~y~~~~---~-----~~~~~~~~----d~~g~t~l~l~~--------rl~~lL~~~~~~l~i~~~~~~ 300 (719)
-|+++++.|+..+..+.+ + ....++.. |..|+||||+++ .++++|+..+.+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~-------- 75 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT-------- 75 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT--------
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc--------
Confidence 356778888877777654 1 23344433 367999999876 2334333322210
Q ss_pred CCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCccc----------
Q 005011 301 PNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYD---------- 369 (719)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d---------- 369 (719)
.....++. .........+.++||.|+..++.. ++++|++ |++++..|
T Consensus 76 ------------------~~~~~~~~--~~~~~~d~~g~t~L~~A~~~g~~~--~v~~Ll~~ga~~~~~~~~~~~~~~~~ 133 (260)
T 3jxi_A 76 ------------------GNMREFIN--SPFRDVYYRGQTALHIAIERRCKH--YVELLVEKGADVHAQARGRFFQPKDE 133 (260)
T ss_dssp ------------------TCHHHHHT--CCBCCSSEESBCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCEECCCSSSCC
T ss_pred ------------------cchHhhhc--ccccccccCCCCHHHHHHHcCCHH--HHHHHHhCCCCcCccccccccCcccc
Confidence 01111110 111222336778899998888764 7899998 99999998
Q ss_pred ----CCCCcHHHHHHHcCCHHHHHHHHH---CCCCCccccCCCCcHHHHHHHcCc---------HHHHHHHHHCCCCCCC
Q 005011 370 ----VHGQGVIHLCAMLGYTWAILLFSW---SGLSLDFRDKYGWTALHWAAYYGR---------EKMVVDLLSAGAKPNL 433 (719)
Q Consensus 370 ----~~G~T~LH~Aa~~g~~~~v~~Ll~---~Gadin~~d~~G~TpLh~Aa~~G~---------~~iv~~Ll~~Ga~~~~ 433 (719)
..|.||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|+ .+++++|+++|++++.
T Consensus 134 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~ 213 (260)
T 3jxi_A 134 GGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFP 213 (260)
T ss_dssp CCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccc
Confidence 689999999999999999999999 999999999999999999999888 7999999999999832
Q ss_pred CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 005011 434 VTD-PTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA 470 (719)
Q Consensus 434 ~td-~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~ 470 (719)
..+ .+.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 214 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 100 0128999999999999999999999999999865
No 40
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=4.6e-23 Score=191.57 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=119.9
Q ss_pred CCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCC-CCcHH
Q 005011 332 RTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKY-GWTAL 409 (719)
Q Consensus 332 ~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~-G~TpL 409 (719)
+.....+.++|+.++..++.. ++++|++ |++++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |+|||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVE--TVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred cCCCCCCccHHHHHHHcCCHH--HHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 334456778899988888764 7888888 99999999999999999999 9999999999999999999999 99999
Q ss_pred HHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 005011 410 HWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 469 (719)
Q Consensus 410 h~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~ 469 (719)
|+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|+|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGARLDV------CDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCCCCC------CSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCc------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999998 899999999999999999999999999986
No 41
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=5.3e-22 Score=205.29 Aligned_cols=229 Identities=16% Similarity=0.122 Sum_probs=179.5
Q ss_pred CCCCccchhhccccCCcc--c--CCCCCCCC-CCCCccHHHHHH-----HHHHHhhcCCCCcccccCCCCCCChHHHhhh
Q 005011 241 DGHKPISQVLNFEYRSPQ--L--HAPVASSE-DKSKWEEFQVQM-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKF 310 (719)
Q Consensus 241 ~g~~~ls~~~~f~y~~~~--~--~~~~~~~~-d~~g~t~l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~ 310 (719)
+|.+|++.|+..+..+.+ + .+.+++.. +..|+||||+++ +++++|+..+.+++.... ....
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------~g~t 74 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK---------NGAT 74 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------TCCC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC---------CCCC
Confidence 456788888888777665 1 34555555 778999999974 688899888876543221 1122
Q ss_pred hhhhhccc---CcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcc----------cCCCCcHH
Q 005011 311 ASKSTCIS---NSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEY----------DVHGQGVI 376 (719)
Q Consensus 311 ~~~~~~~~---~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~----------d~~G~T~L 376 (719)
+++.+... +....|++.+.+.+.....+.++++.++..++.. ++++|++ |++++.. +..|.|||
T Consensus 75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK--ALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH--HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH--HHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 33333222 3345566665555555666778899888888754 7888888 9999887 78899999
Q ss_pred HHHHHcCCHHHHHHHHHC-CCCCccccCCCCcHHHHHHHcCc----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q 005011 377 HLCAMLGYTWAILLFSWS-GLSLDFRDKYGWTALHWAAYYGR----EKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA 451 (719)
Q Consensus 377 H~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpLh~Aa~~G~----~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA 451 (719)
|+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+ .+++++|+++|++++. +|..|.||||+|
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~------~~~~g~t~L~~A 226 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV------RGERGKTPLILA 226 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC------CCTTSCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCC------cCCCCCcHHHHH
Confidence 999999999999999987 99999999999999999999999 9999999999999998 899999999999
Q ss_pred HHcCCHHHHHHHHH-cCCCCCccccccccccccccccchhhhhhc
Q 005011 452 SKKGFDGLAAFLSE-QALVAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 452 ~~~g~~~iv~~Ll~-~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
+..|+.+++++|++ .|++++.. +..+.||++.+..
T Consensus 227 ~~~~~~~~v~~Ll~~~g~~~~~~---------~~~g~t~l~~A~~ 262 (285)
T 1wdy_A 227 VEKKHLGLVQRLLEQEHIEINDT---------DSDGKTALLLAVE 262 (285)
T ss_dssp HHTTCHHHHHHHHHSSSCCTTCC---------CTTSCCHHHHHHH
T ss_pred HHcCCHHHHHHHHhccCCCcccc---------CCCCCcHHHHHHH
Confidence 99999999999999 89988543 3445677766543
No 42
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.88 E-value=1.3e-22 Score=193.16 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=113.7
Q ss_pred cccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHH
Q 005011 335 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA 413 (719)
Q Consensus 335 ~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa 413 (719)
...+.++++.++. ++. + ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 35 ~~~g~t~L~~A~~-~~~-~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 111 (162)
T 1ihb_A 35 NGFGRTALQVMKL-GNP-E-IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111 (162)
T ss_dssp CTTSCCHHHHCCS-SCH-H-HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CccCccHHHHHHc-CcH-H-HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 3456677777665 554 4 7888888 9999999999999999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 005011 414 YYGREKMVVDLLSAGAK-PNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 469 (719)
Q Consensus 414 ~~G~~~iv~~Ll~~Ga~-~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~ 469 (719)
..|+.+++++|+++|++ ++. +|..|.||||+|+..|+.+++++|+++||+
T Consensus 112 ~~~~~~~v~~Ll~~g~~~~~~------~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 112 KEGHLRVVEFLVKHTASNVGH------RNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HTTCHHHHHHHHHHSCCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HcCCHHHHHHHHHccCCCCCC------cCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999998 476 889999999999999999999999999985
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.88 E-value=4.4e-22 Score=202.01 Aligned_cols=171 Identities=16% Similarity=0.122 Sum_probs=138.2
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchHHHH
Q 005011 266 SEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFEL 345 (719)
Q Consensus 266 ~~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l~~a 345 (719)
..|.+|+||||+++... +..++...+... .....+.+.....+.++||.|
T Consensus 3 ~~d~~g~t~L~~A~~~g--------~~~~v~~Ll~~~----------------------~~~~~~~~~~~~~g~t~L~~A 52 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHE--------EKALTMEVIRQV----------------------KGDLAFLNFQNNLQQTPLHLA 52 (236)
T ss_dssp ----CCCCTTHHHHHTT--------CSSSSSCCCC---------------------------CCCCCCCCTTCCCHHHHH
T ss_pred cCCCCCCchhHHHHHcC--------ChhHHHHHHHHh----------------------hccHHHhhccCCCCCCHHHHH
Confidence 35788999999988763 233333333211 001123344445677889999
Q ss_pred HHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCC------CccccCCCCcHHHHHHHcCcH
Q 005011 346 TLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLS------LDFRDKYGWTALHWAAYYGRE 418 (719)
Q Consensus 346 a~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gad------in~~d~~G~TpLh~Aa~~G~~ 418 (719)
+..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+..|++ ++..|..|+||||+|+..|+.
T Consensus 53 ~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 130 (236)
T 1ikn_D 53 VITNQPE--IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130 (236)
T ss_dssp HHTTCHH--HHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH
T ss_pred HHcCCHH--HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCH
Confidence 8888754 7899998 999999999999999999999999999999999976 577888999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Q 005011 419 KMVVDLLSAGAKPNLVTDPTSQNP-GGLNAADIASKKGFDGLAAFLSEQALVAQFND 474 (719)
Q Consensus 419 ~iv~~Ll~~Ga~~~~~td~~~~d~-~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~ 474 (719)
+++++|+++|++++. ++. .|.||||+|+..|+.+++++|+++|++++..+
T Consensus 131 ~~v~~Ll~~g~~~~~------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 181 (236)
T 1ikn_D 131 GIVELLVSLGADVNA------QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 181 (236)
T ss_dssp HHHHHHHHHTCCTTC------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred HHHHHHHHcCCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Confidence 999999999999998 776 99999999999999999999999999986554
No 44
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.88 E-value=3.6e-22 Score=191.56 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=122.8
Q ss_pred HHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc
Q 005011 323 YLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFR 401 (719)
Q Consensus 323 ~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~ 401 (719)
.+++...+.+.....+.++++.++..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 21 ~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 98 (167)
T 3v31_A 21 TRIEQENVINHTDEEGFTPLMWAAAHGQIA--VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY 98 (167)
T ss_dssp HHHHHSSCTTCCCTTSCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC
T ss_pred HHHHcCCCcCCCCCCCCCHHHHHHHCCCHH--HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcC
Confidence 334444444444556778888888888754 7888888 9999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 005011 402 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA 470 (719)
Q Consensus 402 d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~ 470 (719)
|..|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|++++++.
T Consensus 99 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 99 DWNGGTPLLYAVHGNHVKCVKMLLESGADPTI------ETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 8899999999999999999999999988643
No 45
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=4.2e-22 Score=185.05 Aligned_cols=125 Identities=23% Similarity=0.270 Sum_probs=116.2
Q ss_pred cccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHH
Q 005011 335 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA 413 (719)
Q Consensus 335 ~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa 413 (719)
...+.++++.|+..++.. ++++|++ |++++..|..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDD--EVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHH--HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 345667888888888865 6888888 9999999999999999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 005011 414 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 467 (719)
Q Consensus 414 ~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~G 467 (719)
..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~~------~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVNA------QDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCcC------cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999998 8999999999999999999999999987
No 46
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.88 E-value=1.6e-21 Score=197.44 Aligned_cols=180 Identities=18% Similarity=0.247 Sum_probs=149.4
Q ss_pred CCCCCCCCCccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccccchH
Q 005011 263 VASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSF 342 (719)
Q Consensus 263 ~~~~~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~l 342 (719)
+++..|.+|+||||++++...+ +....|++.+.+.+.....+.+++
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~----------------------------------~~v~~Ll~~g~~~~~~~~~g~t~L 48 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHV----------------------------------DICHMLVQAGANIDTCSEDQRTPL 48 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCH----------------------------------HHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred CcccccCCCCCHHHHHHHcCcH----------------------------------HHHHHHHHcCCCcCccCCCCCCHH
Confidence 4566789999999998754210 011333444444444445567888
Q ss_pred HHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCccccCCCCcHHHHHHHcCcHHH
Q 005011 343 FELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSG-LSLDFRDKYGWTALHWAAYYGREKM 420 (719)
Q Consensus 343 ~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~Aa~~G~~~i 420 (719)
+.|+..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|++.| ++++..|..|+||||+|+..|+.++
T Consensus 49 ~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 126 (237)
T 3b7b_A 49 MEAAENNHLE--AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126 (237)
T ss_dssp HHHHHTTCHH--HHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHhCCHH--HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHH
Confidence 8888888754 7899999 9999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhh
Q 005011 421 VVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITV 493 (719)
Q Consensus 421 v~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~ 493 (719)
+++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++..+ ..+.+|++.+
T Consensus 127 ~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~---------~~g~t~L~~A 184 (237)
T 3b7b_A 127 VKLLLSKGSDINI------RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN---------IHGDSPLHIA 184 (237)
T ss_dssp HHHHHHTTCCTTC------CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC---------TTCCCHHHHH
T ss_pred HHHHHHCCCCCCc------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC---------CCCCCHHHHH
Confidence 9999999999998 88999999999999999999999999999986543 3345666544
No 47
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.88 E-value=7.7e-22 Score=199.30 Aligned_cols=153 Identities=17% Similarity=0.137 Sum_probs=131.0
Q ss_pred CCCcccccchHHHHHHhcChHHHHHHHHHc-CCCC-----CcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccC--
Q 005011 332 RTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKT-----TEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDK-- 403 (719)
Q Consensus 332 ~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~i-----n~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~-- 403 (719)
+.....+.++||.|+..++.. ++++|++ |+++ +..|..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus 31 ~~~~~~g~t~L~~A~~~g~~~--~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 108 (232)
T 2rfa_A 31 HQRGAMGETALHIAALYDNLE--AAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS 108 (232)
T ss_dssp TCCCTTSCCHHHHHHHTTCHH--HHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG
T ss_pred ccCCCCCCCHHHHHHHcCCHH--HHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc
Confidence 334456778899999888754 7888888 8887 66788999999999999999999999999999999876
Q ss_pred -----------CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHcCC
Q 005011 404 -----------YGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA----AFLSEQAL 468 (719)
Q Consensus 404 -----------~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv----~~Ll~~Ga 468 (719)
.|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++ ++|+++|+
T Consensus 109 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA------QDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 799999999999999999999999999998 899999999999999999988 99999999
Q ss_pred CCCccccccccccccccccchhhhhhc
Q 005011 469 VAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 469 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
++....+. +..+..+.||++.+..
T Consensus 183 ~~~~~~~~---~~~~~~g~tpl~~A~~ 206 (232)
T 2rfa_A 183 GDHLKSLE---LVPNNQGLTPFKLAGV 206 (232)
T ss_dssp SCSSCCGG---GCCCTTSCCHHHHHHH
T ss_pred chhhhhhh---ccCCCCCCCHHHHHHH
Confidence 88655442 2344556777776543
No 48
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.88 E-value=9.1e-23 Score=213.38 Aligned_cols=184 Identities=16% Similarity=0.103 Sum_probs=143.7
Q ss_pred CCccchhhccccCCcc------cCCCCCCCCCCCCccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhc
Q 005011 243 HKPISQVLNFEYRSPQ------LHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTC 316 (719)
Q Consensus 243 ~~~ls~~~~f~y~~~~------~~~~~~~~~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~ 316 (719)
++++|.++..++.+.. ..+..++..|.+|+||||++++... .
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~--------~------------------------ 124 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHAN--------F------------------------ 124 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTC--------H------------------------
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCC--------H------------------------
Confidence 3455665555444332 1123367789999999999864321 0
Q ss_pred ccCcHHHHHHHhc-CCCCCcccccchHHHHHHh----cChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHH
Q 005011 317 ISNSWAYLFKSVG-DKRTSLPEAKDSFFELTLK----SKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILL 390 (719)
Q Consensus 317 ~~~~~~~li~~l~-~~~~~~~~~~~~l~~aa~~----~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~ 390 (719)
+....|++.+. +.+.....+.++++.++.. .+..+ +++.|++ |.+++..|..|+||||+|+..|+.++|++
T Consensus 125 --~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~-~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~ 201 (276)
T 4hbd_A 125 --PVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIE-TVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKA 201 (276)
T ss_dssp --HHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHH-HHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred --HHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHH-HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 01123333333 3344445677888888742 22233 6777888 99999999999999999999999999999
Q ss_pred HHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 005011 391 FSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLS-AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 467 (719)
Q Consensus 391 Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~-~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~G 467 (719)
|+++|+++|.+|..|+||||+|+..|+.++|++|++ .|++++. +|..|.||||+|+..|+.+++++|++++
T Consensus 202 Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~------~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 202 LLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL------TDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcC------cCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999999999999999999999999999999999 8999998 8999999999999999999999999876
No 49
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.87 E-value=2.2e-22 Score=211.30 Aligned_cols=145 Identities=13% Similarity=-0.004 Sum_probs=128.3
Q ss_pred HHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCC-CcHHHHHHHcCCHHHHHHHHHCCCCC
Q 005011 321 WAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHG-QGVIHLCAMLGYTWAILLFSWSGLSL 398 (719)
Q Consensus 321 ~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G-~T~LH~Aa~~g~~~~v~~Ll~~Gadi 398 (719)
...|++.+.+.+.....+.+++|.|+..++.. ++++|++ |++++..|..| .||||+|+..|+.+++++|+++|+++
T Consensus 78 v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~--~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~ 155 (285)
T 3kea_A 78 VKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ--TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 155 (285)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH--HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred HHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHH--HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence 45556666665665667788999998888754 7899998 99999999999 79999999999999999999999887
Q ss_pred ccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCCCccc
Q 005011 399 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNA-ADIASKKGFDGLAAFLSEQALVAQFND 474 (719)
Q Consensus 399 n~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~Tp-L~lA~~~g~~~iv~~Ll~~Ga~~~~~~ 474 (719)
... ..|+||||+|+..|+.+++++|+++|++++. +|..|.|| ||+|+..|+.+++++|+++|++++..+
T Consensus 156 ~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~------~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 156 FDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNT------NNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN 225 (285)
T ss_dssp CCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCT------TCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred ccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCc------ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 333 2899999999999999999999999999998 89999998 999999999999999999999998776
No 50
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.87 E-value=2e-23 Score=219.30 Aligned_cols=213 Identities=13% Similarity=0.051 Sum_probs=168.4
Q ss_pred ccCCCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCCCccchhhccccCCcc----cCCCCCCCCCCCC
Q 005011 196 LHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSK 271 (719)
Q Consensus 196 ~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g 271 (719)
...+++|+||..|+.+++..|++.|... .. .+|.||+|.|+..++.+.+ ..+++++..|..|
T Consensus 30 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~---------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 95 (285)
T 3kea_A 30 HGHSASYYAIADNNVRLVCTLLNAGALK-----NL---------LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTGGG-----SC---------CTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTS
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCC-----CC---------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 3447899999999999999999988421 11 1478999999998888766 2467778889999
Q ss_pred ccHHHHHHHHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcccCcHHHHHHHhcCCCCCcccc-cchHHHHHHhcC
Q 005011 272 WEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEA-KDSFFELTLKSK 350 (719)
Q Consensus 272 ~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~~~-~~~l~~aa~~~~ 350 (719)
+||||++++..+ . +....|++.+.+.+.....+ .++++.|+..++
T Consensus 96 ~t~L~~A~~~g~--------~--------------------------~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~ 141 (285)
T 3kea_A 96 NTALYYAVDSGN--------M--------------------------QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141 (285)
T ss_dssp CCHHHHHHHTTC--------H--------------------------HHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred CcHHHHHHHcCC--------H--------------------------HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Confidence 999999764310 0 01133333433333334445 688888888877
Q ss_pred hHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcH-HHHHHHcCcHHHHHHHHHCC
Q 005011 351 LKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTA-LHWAAYYGREKMVVDLLSAG 428 (719)
Q Consensus 351 ~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~Tp-Lh~Aa~~G~~~iv~~Ll~~G 428 (719)
.. ++++|++ |+++... ..|.||||+|+..|+.+++++|+++|+++|.+|..|+|| ||+|+..|+.+++++|+++|
T Consensus 142 ~~--~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g 218 (285)
T 3kea_A 142 VS--IVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218 (285)
T ss_dssp HH--HHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred HH--HHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence 54 7899998 8776332 289999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 005011 429 AKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF 472 (719)
Q Consensus 429 a~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~ 472 (719)
++++. .| +.|+..|+.+++++|+++|++...
T Consensus 219 ad~~~------~~-------~~a~~~~~~~iv~~Ll~~g~~~~~ 249 (285)
T 3kea_A 219 INIYS------AN-------LENVLLDDAEIAKMIIEKHVEYKS 249 (285)
T ss_dssp BCSTT------TT-------GGGGTTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCC------CC-------hhhhhcCCHHHHHHHHHcCCCCCC
Confidence 99998 55 356779999999999999987643
No 51
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.87 E-value=1.6e-22 Score=192.51 Aligned_cols=132 Identities=20% Similarity=0.228 Sum_probs=115.9
Q ss_pred ccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCc-HHHHHH
Q 005011 336 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWT-ALHWAA 413 (719)
Q Consensus 336 ~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~T-pLh~Aa 413 (719)
..+.++||.|+..++.. ++++|++ |++++..|..|.||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+
T Consensus 10 ~~~~t~L~~A~~~g~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 10 EPSADWLATAAARGRVE--EVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86 (156)
T ss_dssp CCSTTHHHHHHHHTCHH--HHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred ccchHHHHHHHHcCCHH--HHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 44667888888888864 7888888 9999999999999999985 99999999999999999999999999 999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccc
Q 005011 414 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMT 476 (719)
Q Consensus 414 ~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~ 476 (719)
..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus 87 ~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~ 143 (156)
T 1bi7_B 87 REGFLDTLVVLHRAGARLDV------RDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHA 143 (156)
T ss_dssp HHTCHHHHHHHHHHTCCSSC------CCTTCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred HCCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcC
Confidence 99999999999999999998 8999999999999999999999999999998766533
No 52
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.87 E-value=1.8e-21 Score=187.56 Aligned_cols=137 Identities=25% Similarity=0.331 Sum_probs=118.6
Q ss_pred HHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc
Q 005011 323 YLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFR 401 (719)
Q Consensus 323 ~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~ 401 (719)
.|++.+.+.+.....+.+++|.|+..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 32 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 109 (169)
T 2y1l_E 32 ILMANGADVNAEDASGWTPLHLAAFNGHLE--IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109 (169)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHcCCHH--HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 344444444444456778888888887754 7888888 9999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 005011 402 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 467 (719)
Q Consensus 402 d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~G 467 (719)
|..|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|++.|
T Consensus 110 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA------QDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999999999999999999999988 8899999999999999999999999876
No 53
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.5e-21 Score=176.94 Aligned_cols=124 Identities=26% Similarity=0.356 Sum_probs=117.5
Q ss_pred ccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcC
Q 005011 338 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG 416 (719)
Q Consensus 338 ~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G 416 (719)
+.++++.|+..++.. +++.|++ |++++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~--~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLE--VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHH--HHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHH--HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence 567888888888764 7888888 9999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 005011 417 REKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 469 (719)
Q Consensus 417 ~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~ 469 (719)
+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++
T Consensus 80 ~~~~~~~Ll~~g~~~~~------~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999998 899999999999999999999999999986
No 54
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.87 E-value=4.3e-22 Score=193.59 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=115.7
Q ss_pred CcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHH
Q 005011 334 SLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 412 (719)
Q Consensus 334 ~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A 412 (719)
....+.++||.++..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 35 ~~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 112 (179)
T 3f6q_A 35 GDDHGFSPLHWACREGRSA--VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112 (179)
T ss_dssp CCTTSCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCcHH--HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 3445667888888877754 6888888 999999999999999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 005011 413 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN 473 (719)
Q Consensus 413 a~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~ 473 (719)
+..|+.+++++|+++|++++. +|..|.||||+|+..++.+++++|+++|++++..
T Consensus 113 ~~~~~~~~v~~Ll~~ga~~~~------~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~ 167 (179)
T 3f6q_A 113 CFWGQDQVAEDLVANGALVSI------CNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI 167 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCSSB------CCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCB
T ss_pred HHcCCHHHHHHHHHCCCCcch------hccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 999999999999999999888 8889999999999999999999999999988543
No 55
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.87 E-value=1.8e-21 Score=186.61 Aligned_cols=141 Identities=17% Similarity=0.069 Sum_probs=127.2
Q ss_pred ccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcC
Q 005011 338 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG 416 (719)
Q Consensus 338 ~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G 416 (719)
+.+++|.|+..++.. +++.|++ |++++..|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~--~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEML--YLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHH--HHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHH--HHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 457899999888865 6788888 9999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhc
Q 005011 417 REKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 417 ~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
+.+++++|+++|++++. .|..|.||||+|+..|+.+++++|+++|++++.. +..+.+|++.+..
T Consensus 81 ~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~---------~~~g~t~l~~A~~ 144 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNE------YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE---------TDSGYNSMDLAVA 144 (167)
T ss_dssp CHHHHHHHHHHTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---------CTTSCCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCc------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc---------CCCCCCHHHHHHH
Confidence 99999999999999998 8999999999999999999999999999998544 3345677665543
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.87 E-value=9.8e-22 Score=189.44 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=121.6
Q ss_pred cccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHH
Q 005011 335 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA 413 (719)
Q Consensus 335 ~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa 413 (719)
...+.++||.++..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 33 ~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 110 (172)
T 3v30_A 33 DERGFTPLIWASAFGEIE--TVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110 (172)
T ss_dssp CTTSCCHHHHHHHTTCHH--HHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHH--HHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 455678888888888754 7888888 9999999999999999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Q 005011 414 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND 474 (719)
Q Consensus 414 ~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~ 474 (719)
..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++....+
T Consensus 111 ~~~~~~~v~~Ll~~ga~~~~------~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~ 165 (172)
T 3v30_A 111 RGNHVKCVEALLARGADLTT------EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165 (172)
T ss_dssp HTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred HcCCHHHHHHHHHcCCCccc------cCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998 89999999999999999999999999998765443
No 57
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=200.56 Aligned_cols=198 Identities=17% Similarity=0.149 Sum_probs=158.9
Q ss_pred CCccHHHHHH-----HHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhccc---CcHHHHHHHhcCCCCCcccccch
Q 005011 270 SKWEEFQVQM-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCIS---NSWAYLFKSVGDKRTSLPEAKDS 341 (719)
Q Consensus 270 ~g~t~l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~l~~~~~~~~~~~~~ 341 (719)
+|+||||+++ ++++.|+..+.+++.... ...++++.+... +....|++.+.+.+.....+.++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 72 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA---------DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 72 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT---------TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC---------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 4789999874 677888888766543221 112334333332 34566777777766667778889
Q ss_pred HHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHH
Q 005011 342 FFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKM 420 (719)
Q Consensus 342 l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~i 420 (719)
++.++..++.. ++++|++ |++++. +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus 73 L~~A~~~~~~~--~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 149 (261)
T 2xai_A 73 LFNACVSGSWD--CVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 149 (261)
T ss_dssp HHHHHHHTCHH--HHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHH--HHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHH
Confidence 99999888754 7888888 999886 4569999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhc
Q 005011 421 VVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 421 v~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
+++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++. .+..+.||.+.+..
T Consensus 150 v~~Ll~~g~~~~-------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~---------~d~~g~tpl~~A~~ 208 (261)
T 2xai_A 150 VKKLLESGADVN-------QGKGQDSPLHAVARTASEELACLLMDFGADTQA---------KNAEGKRPVELVPP 208 (261)
T ss_dssp HHHHHHHTCCTT-------CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC---------CCTTSCCGGGGSCT
T ss_pred HHHHHHcCCCCC-------CCCCCCChHHHHHHcCCHHHHHHHHHcCCCCCC---------cCCCCCChhhhccc
Confidence 999999999998 467899999999999999999999999999853 44556788877653
No 58
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.87 E-value=3.2e-22 Score=191.55 Aligned_cols=122 Identities=21% Similarity=0.267 Sum_probs=99.0
Q ss_pred ccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcC
Q 005011 338 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG 416 (719)
Q Consensus 338 ~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G 416 (719)
+.+++|.++..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 42 g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 119 (165)
T 3twr_A 42 QSTPLHFAAGYNRVS--VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 119 (165)
T ss_dssp CCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred CCCHHHHHHHcChHH--HHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC
Confidence 456777777776653 6777777 8888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 005011 417 REKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQAL 468 (719)
Q Consensus 417 ~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga 468 (719)
+.+++++|+++|++++. +|..|.||||+|+. |+.+++++|+++|+
T Consensus 120 ~~~~v~~Ll~~ga~~~~------~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 120 KYEICKLLLQHGADPTK------KNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CHHHHHHHHHTTCCTTC------CCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CHHHHHHHHHcCCCCcc------cCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 88888888888888887 78888888888766 78888888888876
No 59
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.87 E-value=2e-22 Score=205.94 Aligned_cols=131 Identities=19% Similarity=0.250 Sum_probs=119.7
Q ss_pred cccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHc
Q 005011 337 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY 415 (719)
Q Consensus 337 ~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~ 415 (719)
.+.+++|.++..++.. +++.|++ |+++|..|..|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..
T Consensus 36 ~~~t~L~~A~~~g~~~--~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~ 113 (239)
T 1ycs_B 36 LPLALLLDSSLEGEFD--LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC 113 (239)
T ss_dssp -CHHHHHHHHHHTCHH--HHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred hhhHHHHHHHHcCCHH--HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 3567788888888764 7888888 999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CHHHHH--HHcCCHHHHHHHHHcCCCCCcccc
Q 005011 416 GREKMVVDLLSAGAKPNLVTDPTSQNPGGL-NAADIA--SKKGFDGLAAFLSEQALVAQFNDM 475 (719)
Q Consensus 416 G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~-TpL~lA--~~~g~~~iv~~Ll~~Ga~~~~~~~ 475 (719)
|+.+++++|+++|++++. ++..|. ||||+| +..|+.+++++|+++|++++..+.
T Consensus 114 ~~~~~v~~Ll~~ga~~~~------~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~ 170 (239)
T 1ycs_B 114 NNVQVCKFLVESGAAVFA------MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK 170 (239)
T ss_dssp TCHHHHHHHHHTTCCTTC------CCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGG
T ss_pred CCHHHHHHHHHcCCCcce------ecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccccccc
Confidence 999999999999999998 776776 999999 888999999999999998876543
No 60
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.87 E-value=2.1e-21 Score=185.84 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=127.4
Q ss_pred cccccchHHHHHHhcChHHHHHHHHHc--CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHH
Q 005011 335 LPEAKDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 412 (719)
Q Consensus 335 ~~~~~~~l~~aa~~~~~~e~lv~~Ll~--ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A 412 (719)
...+.++++.++..++.. +++.|++ +.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~--~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVE--TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHH--HHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHH--HHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 345667888888888865 5777777 678888999999999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhh
Q 005011 413 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTIT 492 (719)
Q Consensus 413 a~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~ 492 (719)
+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++.. +..+.+|++.
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~---------~~~g~t~l~~ 147 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNV------ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK---------NRDGNTPLDL 147 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---------CTTSCCTGGG
T ss_pred HHcCcHHHHHHHHhCCCCCCC------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc---------CCCCCChhHh
Confidence 999999999999999999998 8999999999999999999999999999998544 3445677766
Q ss_pred hhcC
Q 005011 493 VDTQ 496 (719)
Q Consensus 493 ~~~~ 496 (719)
+..+
T Consensus 148 a~~~ 151 (165)
T 3twr_A 148 VKDG 151 (165)
T ss_dssp SCTT
T ss_pred HhcC
Confidence 5443
No 61
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=196.68 Aligned_cols=201 Identities=17% Similarity=0.110 Sum_probs=160.1
Q ss_pred EeCCCCccchhhccccCCcc----cCCCCCCCCCCCCccHHHHHHH-----HHHHhhcCCCCcccccCCCCCCChHHHhh
Q 005011 239 SLDGHKPISQVLNFEYRSPQ----LHAPVASSEDKSKWEEFQVQMR-----LAHLLFSSFKGLNILSSKVPPNSLKEAKK 309 (719)
Q Consensus 239 ~~~g~~~ls~~~~f~y~~~~----~~~~~~~~~d~~g~t~l~l~~r-----l~~lL~~~~~~l~i~~~~~~~~~~~~~~~ 309 (719)
+..|.+|++.|+..+..+.+ ..+.+++..+..|+||||++++ ++++|+..+
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-------------------- 65 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG-------------------- 65 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--------------------
T ss_pred ccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC--------------------
Confidence 34566788888888777665 2345666778888899988753 444443333
Q ss_pred hhhhhhcccCcHHHHHHHhcCCCCCc-ccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHH
Q 005011 310 FASKSTCISNSWAYLFKSVGDKRTSL-PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWA 387 (719)
Q Consensus 310 ~~~~~~~~~~~~~~li~~l~~~~~~~-~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~ 387 (719)
.+..... ..+.++++.++..++.. ++++|++ |++++..|..|.||||+|+..|+.++
T Consensus 66 -------------------~~~~~~~~~~~~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 124 (240)
T 3eu9_A 66 -------------------AIVDQLGGDLNSTPLHWATRQGHLS--MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI 124 (240)
T ss_dssp -------------------CCTTCCBTTTTBCHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred -------------------CcchhhcCCcCCChhHHHHHcCCHH--HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHH
Confidence 2222211 22567888888877754 7888888 99999999999999999999999999
Q ss_pred HHHHHHCCCCCccccCCCCcHHHHHHHcCc-HHHHHHHHHCCCCCCCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHH
Q 005011 388 ILLFSWSGLSLDFRDKYGWTALHWAAYYGR-EKMVVDLLSAGAKPNLVTDPTSQNP-GGLNAADIASKKGFDGLAAFLSE 465 (719)
Q Consensus 388 v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~-~~iv~~Ll~~Ga~~~~~td~~~~d~-~G~TpL~lA~~~g~~~iv~~Ll~ 465 (719)
+++|+++|++++.+|..|.||||+|+..++ .+++++|++.|++++. .+. .|.||||+|+..|+.+++++|++
T Consensus 125 ~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 125 VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL------GDKYHKNTALHWAVLAGNTTVISLLLE 198 (240)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTC------CCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcch------hhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999997776 8999999999999998 665 89999999999999999999999
Q ss_pred cCCCCCccccccccccccccccchhhhhhc
Q 005011 466 QALVAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 466 ~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
+|++++.. +..+.+|++.+..
T Consensus 199 ~g~~~~~~---------~~~g~t~l~~A~~ 219 (240)
T 3eu9_A 199 AGANVDAQ---------NIKGESALDLAKQ 219 (240)
T ss_dssp HTCCTTCB---------CTTSCBHHHHHHH
T ss_pred cCCCCCCc---------CCCCCCHHHHHHH
Confidence 99998544 3345677765543
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.87 E-value=2e-21 Score=190.93 Aligned_cols=146 Identities=18% Similarity=0.139 Sum_probs=130.8
Q ss_pred CCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHH
Q 005011 333 TSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHW 411 (719)
Q Consensus 333 ~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~ 411 (719)
.....+.++||.|+..++.. +++.|++ |++++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~--~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMEN--AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGG--GHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHH--HHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 33456788999999988765 6888888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhh
Q 005011 412 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTI 491 (719)
Q Consensus 412 Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~ 491 (719)
|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++.. +..+.+|++
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~---------~~~g~t~l~ 172 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVND------RNLEGETPLIVASKYGRSEIVKKLLELGADISAR---------DLTGLTAEA 172 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSC------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB---------CTTSCBHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc---------CCCCCCHHH
Confidence 9999999999999999999998 8999999999999999999999999999998543 344567776
Q ss_pred hhhc
Q 005011 492 TVDT 495 (719)
Q Consensus 492 ~~~~ 495 (719)
.+..
T Consensus 173 ~A~~ 176 (192)
T 2rfm_A 173 SARI 176 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.86 E-value=3.7e-21 Score=185.34 Aligned_cols=141 Identities=19% Similarity=0.212 Sum_probs=126.3
Q ss_pred cccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHc
Q 005011 337 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY 415 (719)
Q Consensus 337 ~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~ 415 (719)
...++++.|+..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus 13 ~~~~~l~~A~~~g~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDD--EVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp CHHHHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccchHHHHHHcCCHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 3456788888888765 6888888 999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhh
Q 005011 416 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVD 494 (719)
Q Consensus 416 G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~ 494 (719)
|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++..+ ..+.+|++.+.
T Consensus 91 ~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------~~g~t~l~~A~ 154 (169)
T 2y1l_E 91 GHLEIVEVLLKNGADVNA------NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD---------KFGKTAFDISI 154 (169)
T ss_dssp TCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------TTSCCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC---------CCCCCHHHHHH
Confidence 999999999999999998 88999999999999999999999999999885443 34566766553
No 64
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.86 E-value=3.2e-21 Score=182.44 Aligned_cols=125 Identities=23% Similarity=0.232 Sum_probs=97.9
Q ss_pred cchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCc
Q 005011 339 KDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGR 417 (719)
Q Consensus 339 ~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~ 417 (719)
.++|+.++..++.. +++.|++ |++++ .|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~--~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDD--EVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHH--HHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHH--HHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 45677777776654 5667776 77765 47778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 005011 418 EKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF 472 (719)
Q Consensus 418 ~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~ 472 (719)
.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 80 ~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 128 (153)
T 1awc_B 80 ANIVEVLLKHGADVNA------KDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128 (153)
T ss_dssp HHHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHcCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 8888888888888877 777888888888888888888888888887743
No 65
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.86 E-value=2.4e-21 Score=183.44 Aligned_cols=125 Identities=17% Similarity=0.227 Sum_probs=113.2
Q ss_pred CCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHH
Q 005011 332 RTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALH 410 (719)
Q Consensus 332 ~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh 410 (719)
+.....+.++++. |..++. + ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus 30 ~~~~~~g~t~L~~-~~~~~~-~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (156)
T 1bd8_A 30 DALNRFGKTALQV-MMFGST-A-IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106 (156)
T ss_dssp TCCCTTSCCHHHH-SCTTCH-H-HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred cccCCCCCcHHHH-HHcCCH-H-HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 3334556778888 766665 3 7888888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 005011 411 WAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ 466 (719)
Q Consensus 411 ~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~ 466 (719)
+|+..|+.+++++|++. ++++. +|..|.||||+|+..|+.+++++|+++
T Consensus 107 ~A~~~~~~~~v~~Ll~~-~~~~~------~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 107 LAVQEGHTAVVSFLAAE-SDLHR------RDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHTCHHHHHHHHTT-SCTTC------CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHhChHHHHHHHHhc-cCCCC------cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999999 88887 899999999999999999999999875
No 66
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.86 E-value=5.2e-21 Score=185.91 Aligned_cols=130 Identities=21% Similarity=0.193 Sum_probs=118.2
Q ss_pred cccchHHHHHHhcChHHHHHHHHHc--CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHH
Q 005011 337 EAKDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY 414 (719)
Q Consensus 337 ~~~~~l~~aa~~~~~~e~lv~~Ll~--ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~ 414 (719)
...++++.++..++.. +++.|++ +.+++..|..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+.
T Consensus 4 ~~~~~l~~A~~~g~~~--~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAV--AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ---CCHHHHHHHTCHH--HHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH--HHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 3557899999888875 5666666 77899999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Q 005011 415 YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND 474 (719)
Q Consensus 415 ~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~ 474 (719)
.|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 135 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADINA------VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135 (179)
T ss_dssp TTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCC
T ss_pred cCCHHHHHHHHHcCCCCCc------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhc
Confidence 9999999999999999998 89999999999999999999999999999986543
No 67
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.86 E-value=7.5e-21 Score=179.92 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=118.6
Q ss_pred HHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc
Q 005011 322 AYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF 400 (719)
Q Consensus 322 ~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~ 400 (719)
..+++.+.+.. ....+.++++.++..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 19 ~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 95 (153)
T 1awc_B 19 RILMANGAPFT-TDWLGTSPLHLAAQYGHFS--TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95 (153)
T ss_dssp HHHHHHTCCCC-CCTTCCCHHHHHHHHTCHH--HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred HHHHHcCCCCC-cCCCCCCHHHHHHHcCCHH--HHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCC
Confidence 34444444332 2345678888888888764 7889998 999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 005011 401 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 463 (719)
Q Consensus 401 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~L 463 (719)
+|..|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|
T Consensus 96 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 96 KDMLKMTALHWATEHNHQEVVELLIKYGADVHT------QSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc------cCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999999999999999999998 899999999999999999999987
No 68
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.86 E-value=1.3e-21 Score=209.80 Aligned_cols=222 Identities=13% Similarity=-0.000 Sum_probs=158.1
Q ss_pred CCCCCCCCCCCccHHHHHHHHHHHhhcCCCCcccccCCCCCCC----hHHHhhhh---hhhhcccCcHHHHHHHhcCCCC
Q 005011 261 APVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNS----LKEAKKFA---SKSTCISNSWAYLFKSVGDKRT 333 (719)
Q Consensus 261 ~~~~~~~d~~g~t~l~l~~rl~~lL~~~~~~l~i~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~li~~l~~~~~ 333 (719)
+++++..|..|.++++-...++++|+..+.+.+.-........ ....+... ....+..+....+++.+...+.
T Consensus 42 ga~i~~~~~~g~~~~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~ 121 (327)
T 1sw6_A 42 PLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 121 (327)
T ss_dssp SCCCEECBCCCCCCCHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCC
T ss_pred CcccccCCCCCCcccCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCC
Confidence 4566777888999999889999999988754321100000000 00000000 0112223455566666655433
Q ss_pred -----CcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCC---HHHHHHHHHCC-CCCccccC
Q 005011 334 -----SLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGY---TWAILLFSWSG-LSLDFRDK 403 (719)
Q Consensus 334 -----~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~---~~~v~~Ll~~G-adin~~d~ 403 (719)
....+.++||.||..++.. ++++|++ |++++.+|..|+||||+|+..|+ .++++.|+..+ ++++.+|.
T Consensus 122 dvn~~~d~~g~TpLh~Aa~~g~~~--~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~ 199 (327)
T 1sw6_A 122 NLNIPVDEHGNTPLHWLTSIANLE--LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 199 (327)
T ss_dssp CSCSCCSTTCCCHHHHHHHTTCHH--HHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred CcccccCCCCCcHHHHHHHcCCHH--HHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC
Confidence 4566788999999888764 7899999 99999999999999999999998 68888888887 78999999
Q ss_pred CCCcHHHHHHH----cCcHHHHHHHHHC--------------------CCCCCCCC-------------------CCCCC
Q 005011 404 YGWTALHWAAY----YGREKMVVDLLSA--------------------GAKPNLVT-------------------DPTSQ 440 (719)
Q Consensus 404 ~G~TpLh~Aa~----~G~~~iv~~Ll~~--------------------Ga~~~~~t-------------------d~~~~ 440 (719)
.|+||||+|+. .|+.+++++|++. |++++..+ +++.+
T Consensus 200 ~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~ 279 (327)
T 1sw6_A 200 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 279 (327)
T ss_dssp TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCC
Confidence 99999999999 8999999999987 55555432 35669
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhh
Q 005011 441 NPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITV 493 (719)
Q Consensus 441 d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~ 493 (719)
|..|.||||+|+..|+.+++++|+++|++++.. +..+.||++.+
T Consensus 280 d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~---------d~~G~TpL~~A 323 (327)
T 1sw6_A 280 DSNGDTCLNIAARLGNISIVDALLDYGADPFIA---------NKSGLRPVDFG 323 (327)
T ss_dssp CTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC---------CTTSCCGGGGT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc---------CCCCCCHHHHH
Confidence 999999999999999999999999999998544 34456676654
No 69
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.86 E-value=7.2e-21 Score=183.33 Aligned_cols=140 Identities=15% Similarity=0.042 Sum_probs=124.1
Q ss_pred cchHHHHHHhcChHHHHHHHHHc-CCC-CCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcC
Q 005011 339 KDSFFELTLKSKLKEWLLERVVE-GSK-TTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG 416 (719)
Q Consensus 339 ~~~l~~aa~~~~~~e~lv~~Ll~-ga~-in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G 416 (719)
.++++.++..++.. +++.|+. |.+ ++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~--~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 3 SLSIHQLAAQGELD--QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG 80 (172)
T ss_dssp -CCHHHHHHTTCHH--HHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred hhhHHHHHHcCCHH--HHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence 46789999888875 5777777 665 8889999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhc
Q 005011 417 REKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 417 ~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++.. +..+.+|++.+..
T Consensus 81 ~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~---------~~~g~t~l~~A~~ 144 (172)
T 3v30_A 81 YTDIVGLLLERDVDINI------YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE---------ADSGYTPMDLAVA 144 (172)
T ss_dssp CHHHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---------CTTSCCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc---------CCCCCCHHHHHHH
Confidence 99999999999999998 8999999999999999999999999999988543 3345677765543
No 70
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.85 E-value=1.8e-21 Score=199.97 Aligned_cols=165 Identities=13% Similarity=0.019 Sum_probs=134.0
Q ss_pred HHHHHHhcCCCC----CcccccchHHHHHHh---cChHHHHHHHHHc-CCCCCc-----------ccCCCCcHHHHHHHc
Q 005011 322 AYLFKSVGDKRT----SLPEAKDSFFELTLK---SKLKEWLLERVVE-GSKTTE-----------YDVHGQGVIHLCAML 382 (719)
Q Consensus 322 ~~li~~l~~~~~----~~~~~~~~l~~aa~~---~~~~e~lv~~Ll~-ga~in~-----------~d~~G~T~LH~Aa~~ 382 (719)
++++..+.+.+. ....+.++||.|+.. ++.. ++++|++ |++++. .|..|.||||+|+..
T Consensus 23 ~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~--~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~ 100 (256)
T 2etb_A 23 EYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA--CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK 100 (256)
T ss_dssp HHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCT--THHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT
T ss_pred HHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHH--HHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc
Confidence 345555555554 456778899999987 6654 6888888 877663 347899999999999
Q ss_pred CCHHHHHHHHHCCCCCccccCC-------------CCcHHHHHHHcCcHHHHHHHHH---CCCCCCCCCCCCCCCCCCCC
Q 005011 383 GYTWAILLFSWSGLSLDFRDKY-------------GWTALHWAAYYGREKMVVDLLS---AGAKPNLVTDPTSQNPGGLN 446 (719)
Q Consensus 383 g~~~~v~~Ll~~Gadin~~d~~-------------G~TpLh~Aa~~G~~~iv~~Ll~---~Ga~~~~~td~~~~d~~G~T 446 (719)
|+.+++++|+++|++++.+|.. |+||||+|+..|+.+++++|++ +|++++. +|..|.|
T Consensus 101 g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~------~d~~g~T 174 (256)
T 2etb_A 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA------TDSLGNT 174 (256)
T ss_dssp TCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC------CCTTSCC
T ss_pred CCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCc------cCCCCCC
Confidence 9999999999999999999986 9999999999999999999999 9999998 8999999
Q ss_pred HHHHHHH--cCCHH-------HHHHHHHcCCCCCccccccccccccccccchhhhhhcC
Q 005011 447 AADIASK--KGFDG-------LAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQ 496 (719)
Q Consensus 447 pL~lA~~--~g~~~-------iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 496 (719)
|||+|+. .++.+ ++++|+++|++++.... -.+..+..+.||++.+...
T Consensus 175 pLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~--~~~~~d~~g~tpL~~A~~~ 231 (256)
T 2etb_A 175 VLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ--LEEISNHQGLTPLKLAAKE 231 (256)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC--GGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccc--cccccCCCCCCHHHHHHHh
Confidence 9999999 88888 99999999998732210 0123445567888766443
No 71
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.85 E-value=1.1e-20 Score=186.26 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=127.2
Q ss_pred cccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCccccCCCCcHHHHH
Q 005011 335 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFS-WSGLSLDFRDKYGWTALHWA 412 (719)
Q Consensus 335 ~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll-~~Gadin~~d~~G~TpLh~A 412 (719)
...+.++|+.|+..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+ ..+++++..|..|.||||+|
T Consensus 36 ~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A 113 (201)
T 3hra_A 36 DTEGNTPLNIAVHNNDIE--IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPA 113 (201)
T ss_dssp CTTSCCHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHH
T ss_pred CCCCCCHHHHHHHcCCHH--HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHH
Confidence 345678899888888754 7888888 9999999999999999999999999999999 77889999999999999999
Q ss_pred HHcCcHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCccccccccccccccc
Q 005011 413 AYYGREKMVVDLLSAG-AKPNLVTDPTSQNPGGLNAADIASKKGF-----DGLAAFLSEQALVAQFNDMTLAGNISGSLQ 486 (719)
Q Consensus 413 a~~G~~~iv~~Ll~~G-a~~~~~td~~~~d~~G~TpL~lA~~~g~-----~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~ 486 (719)
+..|+.+++++|+++| ++++. +|..|.||||+|+..+. .+++++|+++|++++..+ ..+
T Consensus 114 ~~~~~~~~v~~Ll~~g~~~~~~------~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~---------~~g 178 (201)
T 3hra_A 114 AEKGHIDNVKLLLEDGREDIDF------QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD---------NSG 178 (201)
T ss_dssp HHTTCHHHHHHHHHHCCCCTTC------CCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCC---------TTS
T ss_pred HHcCCHHHHHHHHHcCCCCcCC------CCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccC---------CCC
Confidence 9999999999999999 89998 89999999999999988 999999999999985443 345
Q ss_pred cchhhhhh
Q 005011 487 TGSTITVD 494 (719)
Q Consensus 487 ~~~~~~~~ 494 (719)
.+|++.+.
T Consensus 179 ~t~l~~A~ 186 (201)
T 3hra_A 179 RTAMDYAN 186 (201)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 67766553
No 72
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.85 E-value=7.3e-21 Score=181.07 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=125.2
Q ss_pred ccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcC
Q 005011 338 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG 416 (719)
Q Consensus 338 ~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G 416 (719)
..++++.|+..++.. +++.|++ |++++..|..|.||||+|+. |+.+++++|++.|++++.+|..|+||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~--~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLE--QLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHH--HHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHH--HHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 456788888888764 6888888 99999999999999999999 9999999999999999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhc
Q 005011 417 REKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 417 ~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|+++. +..+..+.+|++.+..
T Consensus 82 ~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------~~~~~~g~t~l~~A~~ 146 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNI------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV--------GHRNHKGDTACDLARL 146 (162)
T ss_dssp CHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT--------TCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCC------cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC--------CCcCCCCCcHHHHHHH
Confidence 99999999999999998 89999999999999999999999999999741 2233445677766543
No 73
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.85 E-value=1.6e-20 Score=188.69 Aligned_cols=143 Identities=12% Similarity=-0.003 Sum_probs=125.2
Q ss_pred cccccchHHHHHHhcChHHHHHHHHHc-C--CCCCc-ccCCCCcHHHHHHHcCCHHHHHHHHHCC--CCCccccCCCCcH
Q 005011 335 LPEAKDSFFELTLKSKLKEWLLERVVE-G--SKTTE-YDVHGQGVIHLCAMLGYTWAILLFSWSG--LSLDFRDKYGWTA 408 (719)
Q Consensus 335 ~~~~~~~l~~aa~~~~~~e~lv~~Ll~-g--a~in~-~d~~G~T~LH~Aa~~g~~~~v~~Ll~~G--adin~~d~~G~Tp 408 (719)
...+.++++.|+..++.. ++++|++ | .+++. .|..|.||||+|+..|+.+++++|+++| ++++.+|..|+||
T Consensus 33 ~~~g~t~L~~A~~~~~~~--~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~ 110 (228)
T 2dzn_A 33 DQDGRIPLHWSVSFQAHE--ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110 (228)
T ss_dssp CTTSCCHHHHHHHTTCHH--HHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCH
T ss_pred CCCCCCHHHHHHHcCCHH--HHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCH
Confidence 445678888888887754 7888888 8 56666 8899999999999999999999999999 9999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccccccccccccccc
Q 005011 409 LHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA-LVAQFNDMTLAGNISGSLQT 487 (719)
Q Consensus 409 Lh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~G-a~~~~~~~~l~~~~~~~~~~ 487 (719)
||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++| ++++.. +..+.
T Consensus 111 L~~A~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------d~~g~ 175 (228)
T 2dzn_A 111 LHLAVGKKWFEVSQFLIENGASVRI------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ---------DKQGW 175 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSCC------CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCC---------CTTSC
T ss_pred HHHHHHcCCHhHHHHHHHcCCCccc------cCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCc---------CCCCC
Confidence 9999999999999999999999998 8999999999999999999999999999 877543 34456
Q ss_pred chhhhhh
Q 005011 488 GSTITVD 494 (719)
Q Consensus 488 ~~~~~~~ 494 (719)
||++.+.
T Consensus 176 t~L~~A~ 182 (228)
T 2dzn_A 176 TPLFHAL 182 (228)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 7766553
No 74
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=7.7e-21 Score=164.56 Aligned_cols=93 Identities=30% Similarity=0.380 Sum_probs=89.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q 005011 371 HGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADI 450 (719)
Q Consensus 371 ~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~l 450 (719)
+|+||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++. +|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCCCHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHcCCHHHHHHHHHcCCC
Q 005011 451 ASKKGFDGLAAFLSEQALV 469 (719)
Q Consensus 451 A~~~g~~~iv~~Ll~~Ga~ 469 (719)
|+..|+.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999985
No 75
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.84 E-value=8.8e-21 Score=196.89 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=125.6
Q ss_pred cccccchHHHHHHh---cChHHHHHHHHHc-CCCC-------Cc----ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCc
Q 005011 335 LPEAKDSFFELTLK---SKLKEWLLERVVE-GSKT-------TE----YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLD 399 (719)
Q Consensus 335 ~~~~~~~l~~aa~~---~~~~e~lv~~Ll~-ga~i-------n~----~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin 399 (719)
...+.++||.|+.. ++. + ++++|++ |+++ +. .|..|.||||+|+..|+.+++++|+++|++++
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~-~-~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~ 128 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQN-D-TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBC-H-HHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CcCCCCHHHHHHHHHhcCCh-H-HHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 34577889998875 554 3 7888888 7652 32 56789999999999999999999999999999
Q ss_pred cccC--------------CCCcHHHHHHHcCcHHHHHHHHH---CCCCCCCCCCCCCCCCCCCCHHHHHHHcCC------
Q 005011 400 FRDK--------------YGWTALHWAAYYGREKMVVDLLS---AGAKPNLVTDPTSQNPGGLNAADIASKKGF------ 456 (719)
Q Consensus 400 ~~d~--------------~G~TpLh~Aa~~G~~~iv~~Ll~---~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~------ 456 (719)
.+|. .|+||||+|+..|+.+++++|++ +|++++. +|..|.||||+|+..|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~------~d~~g~tpLh~A~~~~~~~~~~~ 202 (273)
T 2pnn_A 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA------RDSVGNTVLHALVEVADNTVDNT 202 (273)
T ss_dssp CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC------CCTTSCCHHHHHHHHCCSCHHHH
T ss_pred ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee------eCCCCCcHHHHHHHccCcchhHH
Confidence 9997 79999999999999999999999 9999998 89999999999999998
Q ss_pred ---HHHHHHHHHcCCCCCccccccccccccccccchhhhhhcC
Q 005011 457 ---DGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQ 496 (719)
Q Consensus 457 ---~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 496 (719)
.+++++|+++|++++..... .+..+..+.||++.+...
T Consensus 203 ~~~~~~v~~Ll~~ga~~n~~~~~--~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 203 KFVTSMYNEILILGAKLHPTLKL--EEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCG--GGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhccccccc--ccccCCCCCCHHHHHHHh
Confidence 89999999999987532110 123455567888766443
No 76
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.84 E-value=4.8e-21 Score=194.89 Aligned_cols=130 Identities=17% Similarity=0.265 Sum_probs=119.8
Q ss_pred cccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHc
Q 005011 337 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY 415 (719)
Q Consensus 337 ~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~ 415 (719)
++.++|+.|+..++.. +++.|++ |++++..|..|+||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..
T Consensus 20 ~~~t~L~~A~~~g~~~--~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 20 NPLVLLLDAALTGELE--VVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC 97 (229)
T ss_dssp CHHHHHHHHHHHTCHH--HHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred chhHHHHHHHHcCCHH--HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence 4456688888887764 6888888 999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCHHHHH--HHcCCHHHHHHHHHcCCCCCccc
Q 005011 416 GREKMVVDLLSAGAKPNLVTDPTSQN-PGGLNAADIA--SKKGFDGLAAFLSEQALVAQFND 474 (719)
Q Consensus 416 G~~~iv~~Ll~~Ga~~~~~td~~~~d-~~G~TpL~lA--~~~g~~~iv~~Ll~~Ga~~~~~~ 474 (719)
|+.+++++|+++|++++. .+ ..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 98 g~~~~v~~Ll~~ga~~~~------~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~ 153 (229)
T 2vge_A 98 NDTVICMALVQHGAAIFA------TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153 (229)
T ss_dssp TCHHHHHHHHTTTCCTTC------CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSG
T ss_pred CCHHHHHHHHHcCCCccc------ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccccc
Confidence 999999999999999998 65 6999999999 99999999999999999887765
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.83 E-value=3.2e-20 Score=175.62 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=121.9
Q ss_pred cchHHHHHHhcChHHHHHHHHHc--CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcC
Q 005011 339 KDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG 416 (719)
Q Consensus 339 ~~~l~~aa~~~~~~e~lv~~Ll~--ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G 416 (719)
.++++.|+..++.. +++.|++ +.+++..|..|.||||+ |..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~--~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 3 GDRLSGAAARGDVQ--EVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHTCHH--HHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred chHHHHHHHhCCHH--HHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 46788888888865 5666666 66999999999999999 9999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhc
Q 005011 417 REKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 417 ~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++ ++++.. +..+.+|++.+..
T Consensus 80 ~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~---------~~~g~t~l~~A~~ 142 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNV------PDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR---------DARGLTPLELALQ 142 (156)
T ss_dssp CHHHHHHHHHTTCCSCC------CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC---------CTTSCCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCC------cCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc---------CCCCCCHHHHHHH
Confidence 99999999999999998 889999999999999999999999999 777433 3445677776543
No 78
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=4e-21 Score=178.34 Aligned_cols=126 Identities=21% Similarity=0.167 Sum_probs=97.7
Q ss_pred cccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHH
Q 005011 335 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA 413 (719)
Q Consensus 335 ~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa 413 (719)
...+.++||.++..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 7 ~~~g~t~L~~A~~~~~~~--~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIP--SVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CTTCCCHHHHHHHHTCHH--HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHH--HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 345667777777777654 5677777 8888888888888888888888888888888888888888888888888888
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 005011 414 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQAL 468 (719)
Q Consensus 414 ~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga 468 (719)
..|+.+++++|+++|++++. +|..|.||||+|+..++.+++.+|.+.+.
T Consensus 85 ~~~~~~~v~~Ll~~ga~~~~------~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGASRNA------VNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HTTCHHHHHHHHHTTCCTTC------CCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HcCCHHHHHHHHHcCCCCCC------CCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 88888888888888888887 77888888888888877777777766554
No 79
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.83 E-value=3.4e-20 Score=190.72 Aligned_cols=151 Identities=12% Similarity=0.067 Sum_probs=123.8
Q ss_pred ccccchHHHHHH---hcChHHHHHHHHHc-CCC-----------CCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc
Q 005011 336 PEAKDSFFELTL---KSKLKEWLLERVVE-GSK-----------TTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF 400 (719)
Q Consensus 336 ~~~~~~l~~aa~---~~~~~e~lv~~Ll~-ga~-----------in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~ 400 (719)
..+.++||.|+. .++. + ++++|++ |++ ++..|..|+||||+||..|+.++|++|+++|++++.
T Consensus 44 ~~g~t~L~~A~~~~~~g~~-~-~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 121 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRN-D-TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA 121 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBC-T-HHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCcHHHHHHHHhhcCCH-H-HHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc
Confidence 447788888884 3443 3 6777877 643 445566999999999999999999999999999999
Q ss_pred cc--------------CCCCcHHHHHHHcCcHHHHHHHHH---CCCCCCCCCCCCCCCCCCCCHHHHHHHcCC-------
Q 005011 401 RD--------------KYGWTALHWAAYYGREKMVVDLLS---AGAKPNLVTDPTSQNPGGLNAADIASKKGF------- 456 (719)
Q Consensus 401 ~d--------------~~G~TpLh~Aa~~G~~~iv~~Ll~---~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~------- 456 (719)
+| ..|+||||+|+..|+.++|++|++ +|++++. +|..|.||||+|+..|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~------~d~~g~TpLh~A~~~~~~~~~~~~ 195 (260)
T 3jxi_A 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR------QDSRGNTVLHALVAIADNTRENTK 195 (260)
T ss_dssp CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC------CCTTSCCHHHHHHHHCCSSHHHHH
T ss_pred cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc------cCCCCCcHHHHHHHhccCchhHHH
Confidence 99 689999999999999999999999 9999998 89999999999999888
Q ss_pred --HHHHHHHHHcCCCCCccccccccccccccccchhhhhhcC
Q 005011 457 --DGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQ 496 (719)
Q Consensus 457 --~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 496 (719)
.+++++|+++|++++.... ..+..+..+.||++.+...
T Consensus 196 ~~~~~v~~Ll~~ga~~~~~~~--~~~~~d~~g~tpL~~A~~~ 235 (260)
T 3jxi_A 196 FVTKMYDLLLIKCAKLFPDTN--LEALLNNDGLSPLMMAAKT 235 (260)
T ss_dssp HHHHHHHHHHHHHHHHCTTCC--GGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccccccc--hhhcccCCCCCHHHHHHHc
Confidence 7999999999998743211 1134555677888776543
No 80
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.82 E-value=1.1e-21 Score=210.39 Aligned_cols=219 Identities=14% Similarity=0.055 Sum_probs=127.2
Q ss_pred EEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCC--------C--C---ccchhhccccCCcc--c--CCCCCCC
Q 005011 204 FCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDG--------H--K---PISQVLNFEYRSPQ--L--HAPVASS 266 (719)
Q Consensus 204 ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g--------~--~---~ls~~~~f~y~~~~--~--~~~~~~~ 266 (719)
++..|++++++.|++.|+.. +...+..+..+ + + ..|.++.....+.. + .+.+++.
T Consensus 54 ~~~~g~~~~v~~Ll~~g~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~ 125 (327)
T 1sw6_A 54 VNDNEQKMKLEAFLQRLLFP--------EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 125 (327)
T ss_dssp CCCHHHHHHHHHHHHHHHC---------------------------------------CHHHHHHHHHHHCTTSCCCSCS
T ss_pred cccCchhHHHHHHHHhccCC--------ccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCccc
Confidence 34559999999999998542 22222222222 1 1 11223222222222 2 3467777
Q ss_pred -CCCCCccHHHHHH-----HHHHHhhcCCCCcccccCCCCCCChHHHhhhhhhhhcc------cCcHHHHHHHh-cCCCC
Q 005011 267 -EDKSKWEEFQVQM-----RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCI------SNSWAYLFKSV-GDKRT 333 (719)
Q Consensus 267 -~d~~g~t~l~l~~-----rl~~lL~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~li~~l-~~~~~ 333 (719)
.|..|+||||+++ +++++|+..+++++..... ..++++.+.. .+....|++.+ .+.+.
T Consensus 126 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~---------g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~ 196 (327)
T 1sw6_A 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM---------GESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196 (327)
T ss_dssp CCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT---------CCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC---------CCCHHHHHHHhcccccHHHHHHHHHhhhccccC
Confidence 7999999999975 5777887777655432211 1123333322 13345666655 33444
Q ss_pred CcccccchHHHHHH----hcChHHHHHHHHHc---------------------CCCCCcccCCCCcHHHHHHHcCCHHHH
Q 005011 334 SLPEAKDSFFELTL----KSKLKEWLLERVVE---------------------GSKTTEYDVHGQGVIHLCAMLGYTWAI 388 (719)
Q Consensus 334 ~~~~~~~~l~~aa~----~~~~~e~lv~~Ll~---------------------ga~in~~d~~G~T~LH~Aa~~g~~~~v 388 (719)
....+.++||.++. .+.. + ++++|++ |++++..|..|.||||+|+. +
T Consensus 197 ~d~~g~tpLh~A~~~~~~~g~~-~-~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~ 268 (327)
T 1sw6_A 197 EDSMNRTILHHIIITSGMTGCS-A-AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------L 268 (327)
T ss_dssp ECTTCCCHHHHHHHHHTSTTCH-H-HHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------H
T ss_pred CCCCCCCHHHHHHHHccccccH-H-HHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------H
Confidence 44555666666665 3332 2 4444432 56666666777777776664 6
Q ss_pred HHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcC
Q 005011 389 LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 455 (719)
Q Consensus 389 ~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g 455 (719)
++|+.+ ++|.+|..|+||||+|+..|+.++|++|+++||+++. +|..|.||||+|+.+|
T Consensus 269 ~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~------~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 269 KWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI------ANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTC------CCTTSCCGGGGTCC--
T ss_pred HHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHhcC
Confidence 666666 6899999999999999999999999999999999998 9999999999998765
No 81
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.82 E-value=6.1e-20 Score=170.27 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=104.5
Q ss_pred CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCC
Q 005011 362 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQN 441 (719)
Q Consensus 362 ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d 441 (719)
|+|+ .+|..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++. +|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------~~ 73 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT------TG 73 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC------cC
Confidence 5677 7899999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhh
Q 005011 442 PGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVD 494 (719)
Q Consensus 442 ~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~ 494 (719)
..|.||||+|+..|+.+++++|+++|++++.. +..+.+|++.+.
T Consensus 74 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~---------~~~g~tpl~~A~ 117 (137)
T 3c5r_A 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV---------NIFGLRPVDYTD 117 (137)
T ss_dssp GGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---------CTTSCCGGGGCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC---------CCCCCCHHHHHh
Confidence 99999999999999999999999999998544 344566665543
No 82
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.82 E-value=1.2e-20 Score=189.97 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=111.1
Q ss_pred ccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCccccCCCCcHHHHHH
Q 005011 336 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWS-GLSLDFRDKYGWTALHWAA 413 (719)
Q Consensus 336 ~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpLh~Aa 413 (719)
..+.++||.||..++.. +++.|++ |++++..|..|+||||+||..|+.++|++|+.. |+++|.+|..|+||||+|+
T Consensus 71 ~~g~t~L~~A~~~g~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLS--WLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp EEESCHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccccCcHH--HHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 34667899998888764 6888888 999999999999999999999999999999999 9999999999999999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Q 005011 414 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND 474 (719)
Q Consensus 414 ~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~ 474 (719)
..|+.+++++|+++|++++. +|..|.||||+|+..|+.++++.|++.|++..+.+
T Consensus 149 ~~~~~~~v~~Ll~~ga~~~~------~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 149 WKGYADIVQLLLAKGARTDL------RNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp HHTCHHHHHHHHHHTCCSCC------CCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred HcCCHHHHHHHHHcCCCCcc------ccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence 99999999999999999998 89999999999999999999999999999887654
No 83
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=9.2e-20 Score=165.97 Aligned_cols=110 Identities=24% Similarity=0.267 Sum_probs=99.2
Q ss_pred cccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHc
Q 005011 337 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY 415 (719)
Q Consensus 337 ~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~ 415 (719)
.+.++++.++..++.. +++.|++ |++++..|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus 6 ~~~~~l~~A~~~~~~~--~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLD--EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp -CHHHHHHHHHTTCHH--HHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHH--HHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 3456788888888764 6777887 999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHc
Q 005011 416 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 454 (719)
Q Consensus 416 G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~ 454 (719)
|+.+++++|+++|++++. +|..|.||||+|...
T Consensus 84 ~~~~~v~~Ll~~ga~~~~------~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADKTV------KGPDGLTAFEATDNQ 116 (123)
T ss_dssp TCHHHHHHHHHTTCCTTC------CCTTSCCHHHHCCCH
T ss_pred CCHHHHHHHHHcCCCCCC------cCCCCCCHHHHhCCH
Confidence 999999999999999998 899999999999443
No 84
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.81 E-value=2.1e-19 Score=188.33 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=90.1
Q ss_pred chHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcH
Q 005011 340 DSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 418 (719)
Q Consensus 340 ~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~ 418 (719)
++++.||..++.. +++.|++ |+++|..|..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 42 t~l~~A~~~g~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~ 119 (299)
T 1s70_B 42 AVFLAACSSGDTE--EVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119 (299)
T ss_dssp HHHHHHHHHTCHH--HHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred cHHHHHHHcCCHH--HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Confidence 4445554444433 3445555 556655555666666666666666666666666666666665666666666666666
Q ss_pred HHHHHHHHCCCCCCCCCC------------------------------------------------------CCCCCCCC
Q 005011 419 KMVVDLLSAGAKPNLVTD------------------------------------------------------PTSQNPGG 444 (719)
Q Consensus 419 ~iv~~Ll~~Ga~~~~~td------------------------------------------------------~~~~d~~G 444 (719)
+++++|+++|++++..+. ....+..|
T Consensus 120 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 199 (299)
T 1s70_B 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199 (299)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred HHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCC
Confidence 666666666655554210 11245679
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhh
Q 005011 445 LNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITV 493 (719)
Q Consensus 445 ~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~ 493 (719)
.||||+|+..|+.+++++|+++|++++..+ ..+.||++.+
T Consensus 200 ~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d---------~~g~tpL~~A 239 (299)
T 1s70_B 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKD---------YDGWTPLHAA 239 (299)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTTTCCTTCCC---------TTCCCHHHHH
T ss_pred CCHHHHHHHCCcHHHHHHHHHcCCCCCCcC---------CCCCcHHHHH
Confidence 999999999999999999999999986543 3456676654
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.81 E-value=2.1e-20 Score=184.12 Aligned_cols=130 Identities=10% Similarity=-0.005 Sum_probs=113.7
Q ss_pred ccccchHHHHHHhcChH--HHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCC------HHHHHHHHHCCCCCccccCCCC
Q 005011 336 PEAKDSFFELTLKSKLK--EWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGY------TWAILLFSWSGLSLDFRDKYGW 406 (719)
Q Consensus 336 ~~~~~~l~~aa~~~~~~--e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~------~~~v~~Ll~~Gadin~~d~~G~ 406 (719)
..+.++||.|+..++.. ..++++|++ |+++|.+|..|+||||+|+..|+ .+++++|+++|+++|.+|..|+
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ 115 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence 34677888887766532 127888888 99999999999999999999987 5789999999999999999999
Q ss_pred -cHHHHHHHcC-----cHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Q 005011 407 -TALHWAAYYG-----REKMVVDLLS-AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQ 471 (719)
Q Consensus 407 -TpLh~Aa~~G-----~~~iv~~Ll~-~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~ 471 (719)
||||+|+..| +.+++++|++ +|++++. +|..|.||||+|+..|+.+++++|++...+.+
T Consensus 116 ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~------~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI------KDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp BCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC------CCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc------cCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999944 4679999999 9999998 99999999999999999999999998765443
No 86
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.81 E-value=8.3e-20 Score=190.84 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=130.8
Q ss_pred CCCcccccchHHHHHHhcChHHHHHHHHHc-CC-CCCcccCCCCcHHHHHH-----HcCCHHHHHHHHHCCCCCccccCC
Q 005011 332 RTSLPEAKDSFFELTLKSKLKEWLLERVVE-GS-KTTEYDVHGQGVIHLCA-----MLGYTWAILLFSWSGLSLDFRDKY 404 (719)
Q Consensus 332 ~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga-~in~~d~~G~T~LH~Aa-----~~g~~~~v~~Ll~~Gadin~~d~~ 404 (719)
+..+.++.++||.|+..++.. ++++|++ |+ +++..|..|.||||+|+ ..++.+++++|+..|++++..|..
T Consensus 105 n~~d~~g~T~Lh~A~~~g~~~--~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~ 182 (276)
T 4hbd_A 105 NIADSNGNTALHYSVSHANFP--VVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA 182 (276)
T ss_dssp TCCCTTSCCHHHHHHHTTCHH--HHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTT
T ss_pred cCCCCCCCCHHHHHHHCCCHH--HHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCC
Confidence 445567889999999888864 7888888 87 99999999999999999 668899999999999999999999
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccccccccccc
Q 005011 405 GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE-QALVAQFNDMTLAGNISG 483 (719)
Q Consensus 405 G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~-~Ga~~~~~~~~l~~~~~~ 483 (719)
|+||||+|+..|+.++|++|+++|++++. +|..|.||||+|+..|+.+++++|++ .|++++.. +
T Consensus 183 g~tpLh~A~~~g~~~~v~~Ll~~gad~n~------~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~---------d 247 (276)
T 4hbd_A 183 GQTALMLAVSHGRVDVVKALLACEADVNV------QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLT---------D 247 (276)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCC---------C
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCc---------C
Confidence 99999999999999999999999999998 89999999999999999999999999 89998543 3
Q ss_pred ccccchhhhhhc
Q 005011 484 SLQTGSTITVDT 495 (719)
Q Consensus 484 ~~~~~~~~~~~~ 495 (719)
..+.||++.+..
T Consensus 248 ~~g~TpL~~A~~ 259 (276)
T 4hbd_A 248 RDGSTALMVALD 259 (276)
T ss_dssp TTSCCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 456777776543
No 87
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.81 E-value=5.1e-20 Score=187.95 Aligned_cols=129 Identities=16% Similarity=0.056 Sum_probs=93.8
Q ss_pred cccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHc
Q 005011 337 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY 415 (719)
Q Consensus 337 ~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~ 415 (719)
.+.++|+.++..+... +++.|++ |++++.. ..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..
T Consensus 4 ~g~t~L~~a~~~~~~~--~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRK--TGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHH--HHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 4567787777766543 6778888 9999864 7899999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Q 005011 416 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND 474 (719)
Q Consensus 416 G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~ 474 (719)
|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 81 g~~~~v~~Ll~~ga~~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 133 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNA------ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133 (239)
T ss_dssp TCHHHHHHHHHHTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCHHHHHHHHHcCCCCCc------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceec
Confidence 999999999999999998 89999999999999999999999999999986554
No 88
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.80 E-value=8e-20 Score=169.55 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=107.3
Q ss_pred CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCC
Q 005011 362 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQN 441 (719)
Q Consensus 362 ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d 441 (719)
+++++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+. |+.+++++|+++|++++. +|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~------~~ 74 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC------AD 74 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC------CB
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC------cC
Confidence 56889999999999999999999999999999999999999999999999999 999999999999999998 88
Q ss_pred CC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhh
Q 005011 442 PG-GLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVD 494 (719)
Q Consensus 442 ~~-G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~ 494 (719)
.. |.||||+|+..|+.+++++|+++|++++.. +..+.+|++.+.
T Consensus 75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~---------d~~g~tpl~~A~ 119 (136)
T 1d9s_A 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVC---------DAWGRLPVDLAE 119 (136)
T ss_dssp TTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCC---------SSSSSCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc---------CCCCCCHHHHHH
Confidence 88 999999999999999999999999998544 344567776554
No 89
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.5e-19 Score=204.95 Aligned_cols=128 Identities=22% Similarity=0.184 Sum_probs=113.0
Q ss_pred chHHHHHHhcChHHHHHHHHHc-CCCCCcc------cCCCCcHHHHHHH---cCCHHHHHHHHHCCCCCccccCCCCcHH
Q 005011 340 DSFFELTLKSKLKEWLLERVVE-GSKTTEY------DVHGQGVIHLCAM---LGYTWAILLFSWSGLSLDFRDKYGWTAL 409 (719)
Q Consensus 340 ~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~------d~~G~T~LH~Aa~---~g~~~~v~~Ll~~Gadin~~d~~G~TpL 409 (719)
..|+.|+..++.. .++.|++ |+++|.. |..|.||||+||. .|+.+++++|+++|+++|.+|..|+|||
T Consensus 134 ~~L~~A~~~g~~~--~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLL--SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHH--HHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred HHHHHHHhccCHH--HHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 4588888888865 5666666 9999987 8899999999976 8999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccc
Q 005011 410 HWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM 475 (719)
Q Consensus 410 h~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~ 475 (719)
|+|+..|+.++|++|+++||+++. +|..|.||||+|+..|+.+++++|+++|++++...+
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~ 271 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGT------VNEAGETALDIARKKHHKECEELLEQAQAGTFAFPL 271 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSC------CCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCcc
Confidence 999999999999999999999998 899999999999999999999999999999876543
No 90
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=99.80 E-value=1.1e-20 Score=163.84 Aligned_cols=88 Identities=34% Similarity=0.696 Sum_probs=81.0
Q ss_pred CCceeeEEecCCCccCCCCeEEEEEccCcCccccCCCcceEEEcCCchhhHHHhhccceeeecCCCCCCcceEEEEeCCC
Q 005011 164 EHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGH 243 (719)
Q Consensus 164 ~~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~G~v~l~v~~~g~ 243 (719)
..++.|+||||+|+|..|||||+|+|.|+.. ..+|.|+||+.+++++++++|+|+|++|||.+|.|+|+|.++|.
T Consensus 4 ~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~-----gs~~~~~fG~~~vpa~~~s~~vl~C~tPp~~~G~v~~~v~~d~~ 78 (95)
T 2cxk_A 4 GSSGMVTDYSPEWSYPEGGVKVLITGPWQEA-----SNNYSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQ 78 (95)
T ss_dssp -CCSCCCEEECSEECTTCCCEEEEESSCCCC-----SSCEEEEETTEEEECEEEETTEEEEECCCCCSEEEEEEEEETTE
T ss_pred CCcEEEEEECCCcccCCCCEEEEEEeECCCC-----CccEEEEECCEEEeEEEeECCEEEEEecCCCCceEeEEEEECCe
Confidence 3578999999999999999999999999964 35799999999999999999999999999999999999999988
Q ss_pred CccchhhccccCCc
Q 005011 244 KPISQVLNFEYRSP 257 (719)
Q Consensus 244 ~~ls~~~~f~y~~~ 257 (719)
. +++.+.|+|++.
T Consensus 79 ~-~s~~~~FeY~~~ 91 (95)
T 2cxk_A 79 I-ISNSVVFEYKSG 91 (95)
T ss_dssp E-CSCCEEEEECCC
T ss_pred e-cCCceEEEEeCC
Confidence 5 599999999974
No 91
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.80 E-value=5e-20 Score=181.46 Aligned_cols=142 Identities=10% Similarity=-0.044 Sum_probs=118.3
Q ss_pred ccchHHHHHHhcChHHHHHHHHHcCCCCCccc-CCCCcHHHHHHHcCCH----HHHHHHHHCCCCCccccCCCCcHHHHH
Q 005011 338 AKDSFFELTLKSKLKEWLLERVVEGSKTTEYD-VHGQGVIHLCAMLGYT----WAILLFSWSGLSLDFRDKYGWTALHWA 412 (719)
Q Consensus 338 ~~~~l~~aa~~~~~~e~lv~~Ll~ga~in~~d-~~G~T~LH~Aa~~g~~----~~v~~Ll~~Gadin~~d~~G~TpLh~A 412 (719)
...+++.++..++..+ +..++. .+++..+ ..|+||||+|+..|+. +++++|+++|+++|.+|..|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~--~~~l~~-~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYED--FLELFE-KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHH--HHHHHH-HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHH--HHHHHh-cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 3467899999998765 444444 2245555 7899999999999975 489999999999999999999999999
Q ss_pred HHcCc------HHHHHHHHHCCCCCCCCCCCCCCCCCCC-CHHHHHHHcCC-----HHHHHHHHH-cCCCCCcccccccc
Q 005011 413 AYYGR------EKMVVDLLSAGAKPNLVTDPTSQNPGGL-NAADIASKKGF-----DGLAAFLSE-QALVAQFNDMTLAG 479 (719)
Q Consensus 413 a~~G~------~~iv~~Ll~~Ga~~~~~td~~~~d~~G~-TpL~lA~~~g~-----~~iv~~Ll~-~Ga~~~~~~~~l~~ 479 (719)
+..|+ .+++++|+++||+++. +|..|. ||||+|+..++ .+++++|++ +|++++.
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~------~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~------- 149 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADITA------LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI------- 149 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCSSS------CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC-------
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCCCc------cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc-------
Confidence 99997 6889999999999998 899999 99999999554 569999999 9999954
Q ss_pred ccccccccchhhhhhcCC
Q 005011 480 NISGSLQTGSTITVDTQN 497 (719)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~ 497 (719)
.+..+.||++.+...+
T Consensus 150 --~d~~G~TpL~~A~~~~ 165 (186)
T 3t8k_A 150 --KDKWGLTALEFVKRCQ 165 (186)
T ss_dssp --CCTTSCCHHHHHHTTT
T ss_pred --cCCCCCCHHHHHHHcC
Confidence 4456778888776553
No 92
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.80 E-value=3.6e-19 Score=186.58 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=111.2
Q ss_pred cchHHHHHHhcChHHHHHHHHHc-CCCCC------cccCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCccccCCCCcH
Q 005011 339 KDSFFELTLKSKLKEWLLERVVE-GSKTT------EYDVHGQGVIHLCAML---GYTWAILLFSWSGLSLDFRDKYGWTA 408 (719)
Q Consensus 339 ~~~l~~aa~~~~~~e~lv~~Ll~-ga~in------~~d~~G~T~LH~Aa~~---g~~~~v~~Ll~~Gadin~~d~~G~Tp 408 (719)
..+++.++..++... +..++. |++++ ..|..|.||||+||.. |+.+++++|+++|+++|.+|..|+||
T Consensus 131 l~~l~~a~~~~d~~~--~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~Tp 208 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFG--LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHTTCHHH--HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred hhhhhhHhhhcccHH--HHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCH
Confidence 346777777777653 555555 88854 4588999999999999 89999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 005011 409 LHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA 470 (719)
Q Consensus 409 Lh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~ 470 (719)
||+|+..|+.++|++|+++||+++. +|..|.||||+|+..|+.+++++|+++|++.
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASIEI------ANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCC------ccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999998 8999999999999999999999999999965
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.80 E-value=1.9e-19 Score=175.89 Aligned_cols=110 Identities=29% Similarity=0.416 Sum_probs=101.4
Q ss_pred cccchHHHHHHhcChHHHHHHHHHcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccc-CCCCcHHHHHHHc
Q 005011 337 EAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRD-KYGWTALHWAAYY 415 (719)
Q Consensus 337 ~~~~~l~~aa~~~~~~e~lv~~Ll~ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d-~~G~TpLh~Aa~~ 415 (719)
.+.+++|.++..++.. +++.|++|++++..|..|+||||+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..
T Consensus 43 ~g~t~L~~A~~~g~~~--~v~~Ll~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 43 EYETPWWTAARKADEQ--ALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHHHTTCHH--HHHHHTTTSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHH--HHHHHHhcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence 3567888888888764 677777799999999999999999999999999999999999999998 8899999999999
Q ss_pred CcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHc
Q 005011 416 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 454 (719)
Q Consensus 416 G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~ 454 (719)
|+.+++++|+++|++++. +|..|.||||+|+..
T Consensus 121 ~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~ 153 (183)
T 3deo_A 121 VRPEVVEALVELGADIEV------EDERGLTALELAREI 153 (183)
T ss_dssp TCHHHHHHHHHHTCCTTC------CCTTSCCHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCCcC------CCCCCCCHHHHHHHh
Confidence 999999999999999998 899999999998876
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.79 E-value=1.6e-19 Score=185.14 Aligned_cols=126 Identities=28% Similarity=0.408 Sum_probs=114.1
Q ss_pred cccchHHHHHHhcChHHHHHHHHHcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccc-CCCCcHHHHHHHc
Q 005011 337 EAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRD-KYGWTALHWAAYY 415 (719)
Q Consensus 337 ~~~~~l~~aa~~~~~~e~lv~~Ll~ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d-~~G~TpLh~Aa~~ 415 (719)
.+.++||.++..++.. +++.|++|+++|..|..|+||||+||..|+.++|++|+++|+++|.+| ..|+||||+|+..
T Consensus 44 ~g~t~L~~A~~~g~~~--~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 44 EYETPWWTAARKADEQ--ALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHTTTCHH--HHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHH--HHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 3567788888777764 678887899999999999999999999999999999999999999999 7899999999999
Q ss_pred CcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH----------------HcCCHHHHHHHHHcCCCC
Q 005011 416 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS----------------KKGFDGLAAFLSEQALVA 470 (719)
Q Consensus 416 G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~----------------~~g~~~iv~~Ll~~Ga~~ 470 (719)
|+.++|++|+++|++++. +|..|.||||+|+ ..|+.+++++|++++.+.
T Consensus 122 g~~~~v~~Ll~~ga~~~~------~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~ 186 (244)
T 3ui2_A 122 VRPEVVEALVELGADIEV------EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY 186 (244)
T ss_dssp TCHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred CCHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence 999999999999999998 8889999988887 678999999999987653
No 95
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.79 E-value=5.4e-19 Score=214.47 Aligned_cols=142 Identities=30% Similarity=0.445 Sum_probs=121.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhhhhHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 005011 514 TAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKM------AAAARIQHRFRSWKVRKE 587 (719)
Q Consensus 514 ~~~~aa~~IQ~~~R~~~~R~r~~~~r~~~~~~~~~~~~Aa~~iQ~~~R~~~~rk~~------~aai~IQs~~Rg~~~Rk~ 587 (719)
....+|+.||++||||+.|++|.+++ .|++.||++|||+.+|+.+ .||+.||++||||++|+.
T Consensus 766 ~l~~aa~~IQa~~Rg~l~Rk~~~~~r-----------~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~ 834 (1080)
T 2dfs_A 766 KLRAACIRIQKTIRGWLMRKKYMRMR-----------RAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKR 834 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH-----------HHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHH
Confidence 34679999999999999999998887 8999999999999998754 389999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCchhHHHHHHHH
Q 005011 588 FLNMRRQAIKIQAAFRGFQVRKQYGKILW--SVGVLEKAILRWRLKRKGFRGLQVDRVEVEAVSDPNHEGDAEEDFYRAS 665 (719)
Q Consensus 588 ~~~~r~aai~IQa~~Rg~~~R~~y~~~~~--a~~~iQ~~~R~~r~~r~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~k~~ 665 (719)
|..++.+++.||++|||+++|+.|+.++. +++.||++||+| ..|+.++
T Consensus 835 y~~lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~-l~R~~y~----------------------------- 884 (1080)
T 2dfs_A 835 YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW-LARVHYH----------------------------- 884 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHTT-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-----------------------------
Confidence 99999999999999999999999998774 899999999999 4443332
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005011 666 RKQAEERVERSVVRVQSMFRSKKAQEEYRRMKLAHDQ 702 (719)
Q Consensus 666 r~q~e~~~~~a~~~IQs~~R~~~aR~~~~rl~~~~~~ 702 (719)
+..+|++.||++||++.+|++|++|+.+++.
T Consensus 885 ------~~~~aai~iQs~~R~~laRr~~~~Lk~ear~ 915 (1080)
T 2dfs_A 885 ------RTLKAIVYLQCCYRRMMAKRELKKLKIEARS 915 (1080)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHTTTC------
T ss_pred ------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1258899999999999999999999888764
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.78 E-value=7.4e-19 Score=159.91 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=98.5
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q 005011 369 DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAA 448 (719)
Q Consensus 369 d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL 448 (719)
+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++. +|..|.|||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~d~~g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA------PDKHHITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC------CCTTSCCHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc------CCCCCCCHH
Confidence 45788999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhh
Q 005011 449 DIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITV 493 (719)
Q Consensus 449 ~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~ 493 (719)
|+|+..|+.+++++|+++|++++.. +..+.+|++.+
T Consensus 78 ~~A~~~~~~~~v~~Ll~~ga~~~~~---------~~~g~t~l~~A 113 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSKGADKTVK---------GPDGLTAFEAT 113 (123)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCC---------CTTSCCHHHHC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCc---------CCCCCCHHHHh
Confidence 9999999999999999999998544 33455666554
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=187.18 Aligned_cols=123 Identities=23% Similarity=0.215 Sum_probs=113.0
Q ss_pred cchHHHHHHhcChHHHHHHHHHc-CCCCCc------ccCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCccccCCCCcH
Q 005011 339 KDSFFELTLKSKLKEWLLERVVE-GSKTTE------YDVHGQGVIHLCAML---GYTWAILLFSWSGLSLDFRDKYGWTA 408 (719)
Q Consensus 339 ~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~------~d~~G~T~LH~Aa~~---g~~~~v~~Ll~~Gadin~~d~~G~Tp 408 (719)
.++|+.++..++.. .+..|+. |++++. .|..|.||||+|+.. |+.+++++|+.+|+++|.+|..|+||
T Consensus 152 ~~~L~~A~~~g~~~--~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 152 PQRLWTAICNRDLL--SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229 (301)
T ss_dssp HHHHHHHHHTTCHH--HHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred HHHHhhhhhccCHH--HHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 35588888888765 3555556 999998 699999999999997 89999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 005011 409 LHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 469 (719)
Q Consensus 409 Lh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~ 469 (719)
||+|+..|+.++|++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~~~------~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALVGT------VNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCCSC------CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 9999999999999999999999998 899999999999999999999999999986
No 98
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=2.1e-19 Score=161.45 Aligned_cols=102 Identities=25% Similarity=0.268 Sum_probs=97.4
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q 005011 367 EYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLN 446 (719)
Q Consensus 367 ~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~T 446 (719)
.+|..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++. +|..|.|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------~d~~g~t 77 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA------RSKDGNT 77 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC------CCTTCCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc------cCCCCCC
Confidence 4688999999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccc
Q 005011 447 AADIASKKGFDGLAAFLSEQALVAQFND 474 (719)
Q Consensus 447 pL~lA~~~g~~~iv~~Ll~~Ga~~~~~~ 474 (719)
|||+|+..|+.+++++|+++|++++..+
T Consensus 78 pl~~A~~~~~~~~~~~Ll~~ga~~n~~~ 105 (115)
T 2l6b_A 78 PEHLAKKNGHHEIVKLLDAKGADVNARS 105 (115)
T ss_dssp TTHHHHTTTCHHHHHHHHTTSSSHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCcCC
Confidence 9999999999999999999999986554
No 99
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.77 E-value=1.3e-18 Score=189.42 Aligned_cols=125 Identities=14% Similarity=0.179 Sum_probs=112.8
Q ss_pred ccchHHHHHHh-cChHHHHHHHHHc-CCCCCccc--CCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHH
Q 005011 338 AKDSFFELTLK-SKLKEWLLERVVE-GSKTTEYD--VHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA 413 (719)
Q Consensus 338 ~~~~l~~aa~~-~~~~e~lv~~Ll~-ga~in~~d--~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa 413 (719)
..++||.|+.. +++ + +++.|++ |+++|..| ..|.||||+||..|+.+++++|+.+|+++|.+|..|+||||+|+
T Consensus 199 ~~t~L~~Aa~~~g~~-~-~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 199 PGALLFRASGHPPSL-P-TMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT 276 (368)
T ss_dssp HHHHHHHHTSSSCCH-H-HHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHccCCH-H-HHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 44567777766 554 4 6777777 99999988 89999999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 005011 414 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA 470 (719)
Q Consensus 414 ~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~ 470 (719)
..|+.++|++|+++|++++. +|..|.||||+|+..|+.+++++|+..+...
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~------~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~ 327 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGA------RDSEGRDPLTIAMETANADIVTLLRLAKMRE 327 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HcCcHHHHHHHHHCcCCCCC------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence 99999999999999999998 8999999999999999999999999988543
No 100
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.76 E-value=7.5e-19 Score=166.92 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=83.9
Q ss_pred CCCcccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCc-HHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHH
Q 005011 332 RTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQG-VIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTAL 409 (719)
Q Consensus 332 ~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T-~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpL 409 (719)
+.....+.+++|.++ .++. + ++++|++ |++++.+|..|.| |||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus 39 ~~~~~~g~t~L~~A~-~~~~-~-~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl 115 (156)
T 1bi7_B 39 NAPNSYGRRPIQVMM-MGSA-R-VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115 (156)
T ss_dssp TCCCSSSCCTTTSSC-TTCH-H-HHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHH
T ss_pred CCCCCCCCCHHHHHH-cCCH-H-HHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 333445667787763 5544 4 7899999 9999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q 005011 410 HWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA 451 (719)
Q Consensus 410 h~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA 451 (719)
|+|+..|+.+++++|+++|++++. +|..|.||.+-+
T Consensus 116 ~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~g~t~~~~~ 151 (156)
T 1bi7_B 116 DLAEELGHRDVARYLRAAAGGTRG------SNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHTCHHHHHHHSSCC-----------------------
T ss_pred HHHHHhCHHHHHHHHHHcCCCCCc------cCcCcCcccccC
Confidence 999999999999999999999998 889999998743
No 101
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.75 E-value=4e-18 Score=158.04 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=100.9
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q 005011 368 YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNA 447 (719)
Q Consensus 368 ~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~Tp 447 (719)
....|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++. +|..|.||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~d~~g~t~ 83 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA------VDAIGFTP 83 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTCCCH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------CCCCCCCH
Confidence 345688999999999999999999999999999999999999999999999999999999999998 88999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhc
Q 005011 448 ADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 448 L~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
||+|+..|+.+++++|+++|++++.. +..+.+|++.+..
T Consensus 84 L~~A~~~~~~~~v~~Ll~~g~~~~~~---------~~~g~tpl~~A~~ 122 (136)
T 2jab_A 84 LHLAAFIGHLEIAEVLLKHGADVNAQ---------DKFGKTAFDISIG 122 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCC---------CTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcCc---------CCCCCCHHHHHHH
Confidence 99999999999999999999988543 3345677765543
No 102
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=172.33 Aligned_cols=110 Identities=16% Similarity=0.050 Sum_probs=97.3
Q ss_pred HHHc-CCCCCc---ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCC
Q 005011 358 RVVE-GSKTTE---YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL 433 (719)
Q Consensus 358 ~Ll~-ga~in~---~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~ 433 (719)
.|++ |++++. .+..|.||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 3 ~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~ 82 (229)
T 2vge_A 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS 82 (229)
T ss_dssp -------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred ehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 3444 777665 455677889999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 005011 434 VTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN 473 (719)
Q Consensus 434 ~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~ 473 (719)
+|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 83 ------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~ 116 (229)
T 2vge_A 83 ------PDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116 (229)
T ss_dssp ------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred ------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 8999999999999999999999999999998644
No 103
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.73 E-value=2.3e-17 Score=149.10 Aligned_cols=109 Identities=27% Similarity=0.302 Sum_probs=99.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q 005011 371 HGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADI 450 (719)
Q Consensus 371 ~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~l 450 (719)
+|+||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.|++++. +|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc------cCCCCCcHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhh
Q 005011 451 ASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVD 494 (719)
Q Consensus 451 A~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~ 494 (719)
|+..|+.+++++|+++|++++..+ ..+.+|++.+.
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~~~~~---------~~g~t~l~~A~ 109 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADVNAKD---------KNGRTPLHLAA 109 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCC---------TTSCCHHHHHH
T ss_pred HHHcChHHHHHHHHHcCCCCcccC---------CCCCCHHHHHH
Confidence 999999999999999999885433 33456665543
No 104
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=1.2e-17 Score=149.27 Aligned_cols=93 Identities=29% Similarity=0.272 Sum_probs=86.1
Q ss_pred CCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q 005011 365 TTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGG 444 (719)
Q Consensus 365 in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G 444 (719)
+...|.+|.||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++. +|..|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g 90 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA------QDKFG 90 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTS
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc------cccCC
Confidence 445678999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCHHHHHHHcCCHHHHHHH
Q 005011 445 LNAADIASKKGFDGLAAFL 463 (719)
Q Consensus 445 ~TpL~lA~~~g~~~iv~~L 463 (719)
.||||+|+..|+.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 9999999999999999987
No 105
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.72 E-value=7.4e-18 Score=164.55 Aligned_cols=110 Identities=21% Similarity=0.089 Sum_probs=99.6
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCC-CCCCC
Q 005011 368 YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQN-PGGLN 446 (719)
Q Consensus 368 ~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d-~~G~T 446 (719)
.+..|.||||+||..|+.++++.|+. |+++|.+|..|+||||+|+..|+.+++++|+++|++++. ++ ..|.|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~~g~t 112 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH------RDMRGGLT 112 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------CCSSSSCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------CCCCCCCC
Confidence 35678999999999999999999999 999999999999999999999999999999999999998 66 89999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhh
Q 005011 447 AADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITV 493 (719)
Q Consensus 447 pL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~ 493 (719)
|||+|+..|+.+++++|+++|++++.. +..+.+|++.+
T Consensus 113 pL~~A~~~~~~~~v~~Ll~~ga~~~~~---------d~~g~tpl~~A 150 (183)
T 3deo_A 113 ALHMAAGYVRPEVVEALVELGADIEVE---------DERGLTALELA 150 (183)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCC---------CTTSCCHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHcCCCCcCC---------CCCCCCHHHHH
Confidence 999999999999999999999998543 34456776655
No 106
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.72 E-value=7.5e-18 Score=169.34 Aligned_cols=112 Identities=21% Similarity=0.135 Sum_probs=101.8
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q 005011 368 YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA-GAKPNLVTDPTSQNPGGLN 446 (719)
Q Consensus 368 ~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~-Ga~~~~~td~~~~d~~G~T 446 (719)
.+..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.++|++|++. |++++. +|..|.|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~------~d~~g~t 142 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ------QNKLGDT 142 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC------CCTTSCC
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc------cCCCCCC
Confidence 467899999999999999999999999999999999999999999999999999999998 999998 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhh
Q 005011 447 AADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVD 494 (719)
Q Consensus 447 pL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~ 494 (719)
|||+|+..|+.+++++|+++|++++..+ ..+.+|++.+.
T Consensus 143 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~---------~~g~t~l~~A~ 181 (222)
T 3ehr_A 143 ALHAAAWKGYADIVQLLLAKGARTDLRN---------IEKKLAFDMAT 181 (222)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSCCCC---------TTSCCHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccc---------CCCCCHHHHhc
Confidence 9999999999999999999999985543 34456665543
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.72 E-value=3e-17 Score=141.76 Aligned_cols=91 Identities=29% Similarity=0.376 Sum_probs=85.2
Q ss_pred ccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcC
Q 005011 338 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG 416 (719)
Q Consensus 338 ~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G 416 (719)
+.+++|.++..++.. ++++|++ |+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~--~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLE--VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHH--HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 568899998888764 7888888 9999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHCCCC
Q 005011 417 REKMVVDLLSAGAK 430 (719)
Q Consensus 417 ~~~iv~~Ll~~Ga~ 430 (719)
+.+++++|+++||+
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999985
No 108
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.70 E-value=1.6e-17 Score=170.34 Aligned_cols=109 Identities=21% Similarity=0.093 Sum_probs=98.8
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCH
Q 005011 369 DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQN-PGGLNA 447 (719)
Q Consensus 369 d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d-~~G~Tp 447 (719)
+..|.||||+||..|+.++++.|+. |+++|.+|..|+||||+|+..|+.++|++|+++|++++. ++ ..|.||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------~~~~~g~t~ 114 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH------RDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC------CCSSSCCCH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc------CCCCCCCCH
Confidence 3568899999999999999999999 999999999999999999999999999999999999998 66 789999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhh
Q 005011 448 ADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITV 493 (719)
Q Consensus 448 L~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~ 493 (719)
||+|+..|+.+++++|+++|++++.. +..+.+|++.+
T Consensus 115 L~~A~~~g~~~~v~~Ll~~ga~~~~~---------d~~g~t~l~~A 151 (244)
T 3ui2_A 115 LHMAAGYVRPEVVEALVELGADIEVE---------DERGLTALELA 151 (244)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCC---------CTTCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCC---------CCCCCcHHHHH
Confidence 99999999999999999999998544 34456676654
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.67 E-value=4.1e-17 Score=146.32 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=96.0
Q ss_pred cccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHH
Q 005011 335 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA 413 (719)
Q Consensus 335 ~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa 413 (719)
+.++.++||.++..++.. +++.|++ |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 6 d~~g~t~L~~A~~~~~~~--~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAE--EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp SCSSCCHHHHHHHHTCHH--HHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred CCCCCCHHHHHHHcCCHH--HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 345778899999888764 7888888 9999999999999999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q 005011 414 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAA 448 (719)
Q Consensus 414 ~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL 448 (719)
..|+.+++++|+++|++++. ++..|.||-
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~------~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNA------RSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHH------HSCCCC---
T ss_pred HCCCHHHHHHHHHcCCCCCc------CCccccccc
Confidence 99999999999999999998 788888874
No 110
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=168.00 Aligned_cols=109 Identities=14% Similarity=0.036 Sum_probs=92.0
Q ss_pred cccccchHHHHHHh---cChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHH
Q 005011 335 LPEAKDSFFELTLK---SKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALH 410 (719)
Q Consensus 335 ~~~~~~~l~~aa~~---~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh 410 (719)
...+.++||.|+.. +.. + ++++|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 187 ~~~g~t~Lh~A~~~~~~~~~-~-iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~ 264 (301)
T 2b0o_E 187 QAPEELVLHLAVKVANQASL-P-LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264 (301)
T ss_dssp CSCEECHHHHHHHTCCTTTH-H-HHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHH
T ss_pred CCCCccHHHHHHHhcccCcH-H-HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 45677888888876 443 4 8899998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCH
Q 005011 411 WAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFD 457 (719)
Q Consensus 411 ~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~ 457 (719)
+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 265 ~A~~~~~~~iv~~Ll~~ga~------------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 265 IARKKHHKECEELLEQAQAG------------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTCHHHHHHHHHHHHH------------TTSSCCC--------
T ss_pred HHHHcCCHHHHHHHHHhcCC------------CCCChhHHHHhcCCc
Confidence 99999999999999999876 367999999999874
No 111
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.64 E-value=3.5e-15 Score=181.24 Aligned_cols=122 Identities=27% Similarity=0.387 Sum_probs=106.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 005011 512 YRTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMA----AAARIQHRFRSWKVRKE 587 (719)
Q Consensus 512 ~r~~~~aa~~IQ~~~R~~~~R~r~~~~r~~~~~~~~~~~~Aa~~iQ~~~R~~~~rk~~~----aai~IQs~~Rg~~~Rk~ 587 (719)
|+....+++.||++|||+..|+++..+ ++..||++||++||||.+|+.+. +++.||++|||+++|+.
T Consensus 787 ~~~~r~aai~IQ~~~Rg~~aR~~~~~l---------r~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~ 857 (1080)
T 2dfs_A 787 YMRMRRAAITIQRYVRGHQARCYATFL---------RRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNK 857 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccccc---------ccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999988544 35789999999999999998775 89999999999999999
Q ss_pred HHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 005011 588 FLNMRR--QAIKIQAAFRGFQVRKQYGKILWSVGVLEKAILRWRLKRKGFRGLQVDRV 643 (719)
Q Consensus 588 ~~~~r~--aai~IQa~~Rg~~~R~~y~~~~~a~~~iQ~~~R~~r~~r~~~r~~r~~~~ 643 (719)
|..++. +++.||++|||+++|+.|++.+.+++.||+.||+| .+|+.++.++.++.
T Consensus 858 ~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~-laRr~~~~Lk~ear 914 (1080)
T 2dfs_A 858 YQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM-MAKRELKKLKIEAR 914 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHH-HHHHHTTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 998775 89999999999999999999999999999999999 78888888876653
No 112
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.59 E-value=4.2e-17 Score=178.15 Aligned_cols=118 Identities=15% Similarity=0.069 Sum_probs=75.3
Q ss_pred cchHHHHHHhcChHHHHHHHHHc-CCCC---CcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc--ccCCCCcHHHHH
Q 005011 339 KDSFFELTLKSKLKEWLLERVVE-GSKT---TEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF--RDKYGWTALHWA 412 (719)
Q Consensus 339 ~~~l~~aa~~~~~~e~lv~~Ll~-ga~i---n~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~--~d~~G~TpLh~A 412 (719)
.++|+.||..++.. ++++|++ |+++ +..+.+ .||||+||..|+.++|++|+++|++++. .|..|+||||+|
T Consensus 129 ~tpL~~Aa~~G~~e--iv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~A 205 (376)
T 2aja_A 129 YQAFRLAAENGHLH--VLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205 (376)
T ss_dssp HHHHHHHHHTTCHH--HHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHH--HHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHH
Confidence 34666666665543 5666666 6542 211222 6777777777777777777777777666 666677777777
Q ss_pred H-HcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 005011 413 A-YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF 472 (719)
Q Consensus 413 a-~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~ 472 (719)
+ ..|+.++|++|++.|+ .|.||||+|+.+|+.+++++|+++|++.+.
T Consensus 206 a~~~G~~eiv~~Ll~~ga-------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~ 253 (376)
T 2aja_A 206 AVGRGHHNVINFLLDCPV-------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKE 253 (376)
T ss_dssp HSTTCCHHHHHHHTTSHH-------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhCCC-------------ccchHHHHHHHCCCHHHHHHHHhcCccccc
Confidence 7 7777777777776542 256777777777777777777777765543
No 113
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.57 E-value=5.7e-15 Score=160.69 Aligned_cols=113 Identities=15% Similarity=0.036 Sum_probs=100.6
Q ss_pred ccCCCCcHHHHHHHc-CCHHHHHHHHHCCCCCcccc--CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q 005011 368 YDVHGQGVIHLCAML-GYTWAILLFSWSGLSLDFRD--KYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGG 444 (719)
Q Consensus 368 ~d~~G~T~LH~Aa~~-g~~~~v~~Ll~~Gadin~~d--~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G 444 (719)
.+..+.|+||+|+.. |+.++++.|+..|+++|..| ..|+||||+|+..|+.++|++|+++|++++. .|..|
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~------~d~~G 268 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ------ADSAG 268 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTS
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC------CCCCC
Confidence 344567999999999 99999999999999999998 8899999999999999999999999999998 89999
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhc
Q 005011 445 LNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDT 495 (719)
Q Consensus 445 ~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~ 495 (719)
.||||+|+..|+.+++++|+++|++++.. +..+.+|++.+..
T Consensus 269 ~TpLh~A~~~g~~~~v~~LL~~Gad~~~~---------d~~G~TpL~~A~~ 310 (368)
T 3jue_A 269 RGPLHHATILGHTGLACLFLKRGADLGAR---------DSEGRDPLTIAME 310 (368)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCC---------CTTSCCHHHHHHH
T ss_pred CCHHHHHHHcCcHHHHHHHHHCcCCCCCc---------CCCCCCHHHHHHH
Confidence 99999999999999999999999998544 3445677776543
No 114
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.57 E-value=6.8e-15 Score=166.62 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=85.8
Q ss_pred cccccchHHHHHH---hcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHH
Q 005011 335 LPEAKDSFFELTL---KSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALH 410 (719)
Q Consensus 335 ~~~~~~~l~~aa~---~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh 410 (719)
...+.++||.|+. .++. + ++++|++ |+++|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~-~-~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 245 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASL-P-LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 245 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTH-H-HHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHH
T ss_pred ccccchHHHHHHHhcccccH-H-HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 4567788988866 4444 4 7899998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHHCCCCCCC
Q 005011 411 WAAYYGREKMVVDLLSAGAKPNL 433 (719)
Q Consensus 411 ~Aa~~G~~~iv~~Ll~~Ga~~~~ 433 (719)
+|+..|+.+++++|+++||+++.
T Consensus 246 ~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 246 IARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HHHHTTCHHHHHHHHHTCC----
T ss_pred HHHHcCCHHHHHHHHHhCCCCCC
Confidence 99999999999999999999986
No 115
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.55 E-value=5e-16 Score=169.60 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=105.8
Q ss_pred CcHHHHHHHhcCCCCCcccccchHHHHHHhcChHHHHHHHHHc-CCCC---CcccCCCCcHHHHHHHcCCHHHHHHHHHC
Q 005011 319 NSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKT---TEYDVHGQGVIHLCAMLGYTWAILLFSWS 394 (719)
Q Consensus 319 ~~~~~li~~l~~~~~~~~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~i---n~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~ 394 (719)
..++++++.+. +..++||.||..++.. ++++|++ |+.. +..+..|.||||+||..|+.++|++|+++
T Consensus 80 ~~~~~l~~~g~-------~~~T~Lh~Aa~~G~~e--~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~ 150 (376)
T 2aja_A 80 QLWSDAHKKGI-------KSEVICFVAAITGCSS--ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150 (376)
T ss_dssp THHHHHHHHTC-------CHHHHHHHHHHHCCHH--HHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred HHHHHHHHcCC-------CcCCHHHHHHHcCCHH--HHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 34556655432 2358899999888865 7888988 7622 23456788999999999999999999999
Q ss_pred CCCC---ccccCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCC
Q 005011 395 GLSL---DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS-KKGFDGLAAFLSEQAL 468 (719)
Q Consensus 395 Gadi---n~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~Ga~~~~~td~~~~d~~G~TpL~lA~-~~g~~~iv~~Ll~~Ga 468 (719)
|+++ +..+.+ +||||+||..|+.++|++|+++|++++. +..|..|.||||+|+ .+|+.+++++|+++|+
T Consensus 151 gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~----~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 151 APTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEAT----AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223 (376)
T ss_dssp CTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred CCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccch----hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence 9862 333333 9999999999999999999999998652 003557999999999 9999999999999874
No 116
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.52 E-value=3.8e-14 Score=126.41 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=80.3
Q ss_pred ccccchHHHHHHhcChHHHHHHHHHc-CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccccCCCCcHHHHHHH
Q 005011 336 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY 414 (719)
Q Consensus 336 ~~~~~~l~~aa~~~~~~e~lv~~Ll~-ga~in~~d~~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~Aa~ 414 (719)
.++.+++|.++..++.. +++.|++ |++++.+|..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 22 ~~g~t~L~~A~~~g~~~--~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 99 (110)
T 2zgd_A 22 SDLGKKLLEAARAGQDD--EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99 (110)
T ss_dssp CCHHHHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CccchHHHHHHHcCCHH--HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence 45667888888888764 6888888 99999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHH
Q 005011 415 YGREKMVVDL 424 (719)
Q Consensus 415 ~G~~~iv~~L 424 (719)
.|+.+++++|
T Consensus 100 ~~~~~~~~~L 109 (110)
T 2zgd_A 100 NGNEDLAEIL 109 (110)
T ss_dssp HTCHHHHHHH
T ss_pred cCCHHHHHHh
Confidence 9999999987
No 117
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.52 E-value=5.9e-14 Score=146.79 Aligned_cols=111 Identities=13% Similarity=-0.014 Sum_probs=98.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCc------cccCCCCcHHHHHHHc---CcHHHHHHHHHCCCCCCCCCCCCCCC
Q 005011 371 HGQGVIHLCAMLGYTWAILLFSWSGLSLD------FRDKYGWTALHWAAYY---GREKMVVDLLSAGAKPNLVTDPTSQN 441 (719)
Q Consensus 371 ~G~T~LH~Aa~~g~~~~v~~Ll~~Gadin------~~d~~G~TpLh~Aa~~---G~~~iv~~Ll~~Ga~~~~~td~~~~d 441 (719)
...++||.|+..|..+.+..++..|++++ ..|..|+||||+|+.. |+.+++++|+++|++++. +|
T Consensus 129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~------~d 202 (278)
T 1dcq_A 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK------QT 202 (278)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC------CC
T ss_pred hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc------cC
Confidence 34579999999999999999999999954 4588999999999999 899999999999999998 89
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccchhhhhhcC
Q 005011 442 PGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQ 496 (719)
Q Consensus 442 ~~G~TpL~lA~~~g~~~iv~~Ll~~Ga~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 496 (719)
..|.||||+|+..|+.+++++|+++|++++.. +..+.||++.+...
T Consensus 203 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~---------d~~g~tpL~~A~~~ 248 (278)
T 1dcq_A 203 GKGSTALHYCCLTDNAECLKLLLRGKASIEIA---------NESGETPLDIAKRL 248 (278)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---------CTTSCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc---------cCCCCCHHHHHHHc
Confidence 99999999999999999999999999998544 44567888766543
No 118
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.91 E-value=3.8e-09 Score=82.99 Aligned_cols=49 Identities=39% Similarity=0.544 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005011 568 KMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQAAFRGFQVRKQYGKILW 616 (719)
Q Consensus 568 ~~~aai~IQs~~Rg~~~Rk~~~~~r~aai~IQa~~Rg~~~R~~y~~~~~ 616 (719)
...+++.||+.||||+.|+.|..++.+++.||++|||+++|+.|..++.
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~ 52 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRR 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999988764
No 119
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.73 E-value=2.1e-08 Score=75.45 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHH
Q 005011 570 AAAARIQHRFRSWKVRKEFLNMRR--QAIKIQAAFRGFQVRKQY 611 (719)
Q Consensus 570 ~aai~IQs~~Rg~~~Rk~~~~~r~--aai~IQa~~Rg~~~R~~y 611 (719)
.+++.||++|||+++|+.|..+++ ++++||++|||+.+|+.|
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 478889999999999999998887 899999999999999877
No 120
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.48 E-value=4.7e-07 Score=70.89 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005011 591 MRRQAIKIQAAFRGFQVRKQYGKILWSVGVLEKAILRWRLKRKGFRGLQ 639 (719)
Q Consensus 591 ~r~aai~IQa~~Rg~~~R~~y~~~~~a~~~iQ~~~R~~r~~r~~~r~~r 639 (719)
+..+++.||++|||++.|+.|.+++.+++.||++|||+ ..|+.+..++
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~-~aR~~~~~~r 51 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGY-QARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45789999999999999999999999999999999999 6666665544
No 121
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.36 E-value=7.9e-07 Score=66.73 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 005011 591 MRRQAIKIQAAFRGFQVRKQYGKILW--SVGVLEKAILRWRLKRK 633 (719)
Q Consensus 591 ~r~aai~IQa~~Rg~~~R~~y~~~~~--a~~~iQ~~~R~~r~~r~ 633 (719)
++.+++.||++|||+++|+.|..++. +++.||++|||| ..|+
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~-~~Rk 45 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGH-SIRA 45 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHH
Confidence 46789999999999999999999887 999999999999 4444
No 122
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=98.07 E-value=1.9e-06 Score=77.43 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=70.1
Q ss_pred ceeeEEecCCCccCCCCeEEEEEccCcCccccCCCcceEEEcCCchhhHHHhhccceeeecCCCC-CCcceEEEEeCCCC
Q 005011 166 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS-PGLFLLYMSLDGHK 244 (719)
Q Consensus 166 l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~-~G~v~l~v~~~g~~ 244 (719)
-+.|+-++|+.|...||+.|.|.|..|. .++-|+||+..+-.++|....++|.+||+. ||.|.+.+...+.+
T Consensus 5 ~P~I~~i~P~eG~~~GG~~V~I~G~nF~-------~GlqV~FG~t~~w~e~itphairv~~PP~~~pG~V~VTl~~k~kq 77 (138)
T 3muj_A 5 TPCIKAISPSEGWTTGGATVIIIGDNFF-------DGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQ 77 (138)
T ss_dssp CCEEEEEESSEEETTCCCEEEEEEESCC-------TTCEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTEE
T ss_pred CCceeEecCCCCCccCCeEEEEeCCCcc-------cCCEEEECCeeeeeeeecccceEEECCCCCCCCceEEEEeecCcc
Confidence 3689999999999999999999999875 457899999998888899999999999995 89999999877765
Q ss_pred ccch-hhccccCC
Q 005011 245 PISQ-VLNFEYRS 256 (719)
Q Consensus 245 ~ls~-~~~f~y~~ 256 (719)
-+.. ...|.|..
T Consensus 78 f~~g~p~~F~Y~~ 90 (138)
T 3muj_A 78 FCKGAPGRFVYTA 90 (138)
T ss_dssp ECTTSCEEEEEEC
T ss_pred cccCCCceEEEec
Confidence 4432 24566654
No 123
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=97.60 E-value=4.4e-05 Score=78.34 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=71.4
Q ss_pred CceeeEEecCCCccCCCCeEEEEEccCcCccccCCCcceEEEcCCchhhHHHhhccceeeecCCCC-CCcceEEEEeCCC
Q 005011 165 HLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS-PGLFLLYMSLDGH 243 (719)
Q Consensus 165 ~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~-~G~v~l~v~~~g~ 243 (719)
..+.|+-++|..|+..||+.|+|.|..|. .++-++||...+-.++|.+..++|.+||+. ||.|.+.+...+.
T Consensus 230 ~tP~IkaIsPnEG~~tGG~tV~IiGenFf-------~GLQVvFGtt~vWselITphAIRV~tPPr~~PGvVdVTLs~ksK 302 (402)
T 3mlp_A 230 ATPCIKAISPSEGWTTGGATVIIIGDNFF-------DGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSK 302 (402)
T ss_dssp SCCEEEECSSCEECTTCCCEEEEEEECCC-------TTCEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTE
T ss_pred CCcceEEecCCCCCccCCeEEEEeCCCcc-------cCCEEEEccEeeeeEEecccceEEECCCCCCCCceEEEEEecCc
Confidence 35799999999999999999999999886 457799999999899999999999999995 9999999988776
Q ss_pred Cccch-hhccccCC
Q 005011 244 KPISQ-VLNFEYRS 256 (719)
Q Consensus 244 ~~ls~-~~~f~y~~ 256 (719)
+.+-. ...|.|..
T Consensus 303 qf~kg~pgrF~YtA 316 (402)
T 3mlp_A 303 QFCKGTPGRFIYTA 316 (402)
T ss_dssp EESTTSCEEEEEC-
T ss_pred ccccCCCCceeeec
Confidence 64442 24566654
No 124
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.07 E-value=0.00099 Score=52.88 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHH
Q 005011 570 AAAARIQHRFRSWKVRKEFLNM---RRQAIKIQAAFRGFQVRKQY 611 (719)
Q Consensus 570 ~aai~IQs~~Rg~~~Rk~~~~~---r~aai~IQa~~Rg~~~R~~y 611 (719)
..++.||+.+||+++|+.|..+ +.++..||..+|++..++.+
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3567778888888888887776 55666778888777766543
No 125
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.99 E-value=0.0012 Score=52.14 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHH
Q 005011 571 AAARIQHRFRSWKVRKEFLNM---RRQAIKIQAAFRGFQVRKQ 610 (719)
Q Consensus 571 aai~IQs~~Rg~~~Rk~~~~~---r~aai~IQa~~Rg~~~R~~ 610 (719)
.++.||+.+||+++|+.|..+ +.++..||..+|++..++.
T Consensus 6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456677777777777777766 4566677777777766554
No 126
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.93 E-value=0.0057 Score=75.85 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHH
Q 005011 570 AAAARIQHRFRSWKVRKEFLNMR---RQAIKIQAAFRGFQVRKQYG 612 (719)
Q Consensus 570 ~aai~IQs~~Rg~~~Rk~~~~~r---~aai~IQa~~Rg~~~R~~y~ 612 (719)
..++.||++||||++|+.|.+++ .+++.||+.||+|..|+.|.
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 47899999999999999998874 58889999999999987653
No 127
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.89 E-value=0.0093 Score=73.93 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhhhhHHHHH
Q 005011 514 TAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRK 567 (719)
Q Consensus 514 ~~~~aa~~IQ~~~R~~~~R~r~~~~r~~~~~~~~~~~~Aa~~iQ~~~R~~~~rk 567 (719)
....+++.||+++|||+.|++|.+++ .+..|+++||+.||+|+.++
T Consensus 790 ~l~~~~~~iQ~~~Rg~l~R~~~~k~~--------~~~~a~~~iQ~~~r~~~~~k 835 (1184)
T 1i84_S 790 KITDVIIAFQAQCRGYLARKAFAKRQ--------QQLESIFCIQYNVRSFMNVX 835 (1184)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999986655 22345566666666665544
No 128
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.89 E-value=0.0012 Score=78.06 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHH
Q 005011 569 MAAAARIQHRFRSWKVRKEFLNM---RRQAIKIQAAFRGFQVRKQYG 612 (719)
Q Consensus 569 ~~aai~IQs~~Rg~~~Rk~~~~~---r~aai~IQa~~Rg~~~R~~y~ 612 (719)
...++.||++||||++|++|+++ |.+++.||++||+|+.|++|.
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 34688899999999999998887 568888999999888887663
No 129
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.81 E-value=0.0035 Score=49.65 Aligned_cols=38 Identities=29% Similarity=0.628 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHH
Q 005011 591 MRRQAIKIQAAFRGFQVRKQYGKI---LWSVGVLEKAILRW 628 (719)
Q Consensus 591 ~r~aai~IQa~~Rg~~~R~~y~~~---~~a~~~iQ~~~R~~ 628 (719)
+...++.||+.+||+++|+.|.++ +.|+.+||..+|.|
T Consensus 5 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~ 45 (64)
T 1wdc_A 5 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 45 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999998 57888999999988
No 130
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.73 E-value=0.0029 Score=49.97 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhhhhHHHH
Q 005011 515 AAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVR 566 (719)
Q Consensus 515 ~~~aa~~IQ~~~R~~~~R~r~~~~r~~~~~~~~~~~~Aa~~iQ~~~R~~~~r 566 (719)
....++.||+..||++.|++|+++. .+..|+..||+.+|+|...
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~--------~~~~A~~iIQrn~R~~~~l 46 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAR--------EKSVSARIIQDNIRAYLEF 46 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999997654 2234455555555555543
No 131
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=96.63 E-value=0.0033 Score=54.50 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=57.7
Q ss_pred ceeeEEecCCCccCCCCeEEEEEccCcCccccCCCcc-eEEEcCCchhhH--HHhhccceeeecCCCC--CCcceEEEEe
Q 005011 166 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSN-MFCVCGEVRVPA--EFVQAGVYRCFLPPHS--PGLFLLYMSL 240 (719)
Q Consensus 166 l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~~~~~-~ac~fG~~ev~~--~li~~Gvl~c~~p~~~--~G~v~l~v~~ 240 (719)
.+.|++|+|..++. |++|+|.|.+|.... .. ..+..|..+..- +......|.|..+|+. .|.|.+.+..
T Consensus 7 ~P~It~i~P~~Gp~--GT~vTI~G~nlg~~~----sdv~~V~vgg~~C~~~~~~~s~~~IvC~~~~~~~~~g~V~V~v~~ 80 (99)
T 1uad_C 7 PPLVTGISPNEGIP--WTKVTIRGENLGTGP----TDLIGLTICGHNCLLTAEWMSASKIVCRVGQAKNDKGDIIVTTKS 80 (99)
T ss_dssp CCEEEEEESSEEST--TCEEEEEEECSCSSG----GGEEEEEETTEECGGGCEEEETTEEEEECCCCSSSSCCEEEEETT
T ss_pred CCEEEEEECCCcCC--CCEEEEEEEeCCCCc----ccceEEEECCEEceEeeceeecCEEEEEeCCCCCcceeEEEEECC
Confidence 58999999999988 799999999886421 11 368888865443 3456678999998886 4555555522
Q ss_pred CCCCccchhhccccCCc
Q 005011 241 DGHKPISQVLNFEYRSP 257 (719)
Q Consensus 241 ~g~~~ls~~~~f~y~~~ 257 (719)
+..+.+ ...|.|.++
T Consensus 81 -~~~~~s-~~~F~y~~P 95 (99)
T 1uad_C 81 -GGRGTS-TVSFKLLKP 95 (99)
T ss_dssp -TEECEE-SSCCEECCC
T ss_pred -CCcEEe-cceEEEeCc
Confidence 222333 347888754
No 132
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.30 E-value=0.0034 Score=69.05 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=71.4
Q ss_pred CCCceeeEEecCCCccCCCCeEEEEEccCcCccccCCCcceEEEcCCchhhHHHhhccceeeecCCCCC-CcceEEEEeC
Q 005011 163 PEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSP-GLFLLYMSLD 241 (719)
Q Consensus 163 ~~~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~-G~v~l~v~~~ 241 (719)
+.+.+.|++|+|..+. .|++|+|.|.+|.+. .....++||..+..-..++...|.|.+|.+.. |.+++.+...
T Consensus 14 ~~~p~~i~~~~P~~g~--~~~~~~i~G~nfg~~----~~~~~v~~~~~~~~v~~~~~~~i~~~vp~~~~~g~~~v~~~~~ 87 (430)
T 3tc9_A 14 PNKPVVISEFSPKEGG--LGTRMLLYGENFGSD----ISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLSILND 87 (430)
T ss_dssp TTSCCEEEEEECSEEC--TTCEEEEEEECCCSC----GGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEEECT
T ss_pred CCCCCEEEEEcCCCCC--CCCEEEEEEEcCCCC----ccceEEEECCEEEEEEEECCCEEEEEeCCCCCCccEEEEEecC
Confidence 4556799999999998 799999999988642 35689999998887666899999999999987 9999888776
Q ss_pred CCC---ccchhhccccCCcc
Q 005011 242 GHK---PISQVLNFEYRSPQ 258 (719)
Q Consensus 242 g~~---~ls~~~~f~y~~~~ 258 (719)
+.. -...-..|+|....
T Consensus 88 ~~~~~~~~~~~~~F~y~~~~ 107 (430)
T 3tc9_A 88 EGEEIANTEANEKFVYQKKM 107 (430)
T ss_dssp TSCEEEEEECSSCCEECCCE
T ss_pred CcceeeEEEEeeEEEEEEEe
Confidence 643 12234678887654
No 133
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=95.96 E-value=0.0049 Score=72.28 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred ceeeEEecCCCccCCCCeEEEEEccCcCcccc--CCCcceEEEcCCchhhH--HHhhccceeeecCCCCCC--cceEEEE
Q 005011 166 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLH--LSKSNMFCVCGEVRVPA--EFVQAGVYRCFLPPHSPG--LFLLYMS 239 (719)
Q Consensus 166 l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~--~~~~~~ac~fG~~ev~~--~li~~Gvl~c~~p~~~~G--~v~l~v~ 239 (719)
.+.|+.|+|..|+..||+.|+|+|.+|..... .......+.+|..+..- ..+....|.|.+||...| .|.+.+.
T Consensus 541 ~P~ItsI~P~~Gp~~GGT~vTI~G~nf~~~~~~~~~~~~~~V~igg~~C~~~~~~~s~t~I~C~tp~~~~~~~~v~V~v~ 620 (727)
T 2uzx_B 541 LPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKCTVGPAMNKHFNMSIIIS 620 (727)
T ss_dssp CCEEEEEESSBCCSSCCCEEEEEEECCCEEETTEEESTTCEEEETTEECEECGGGCCSSEEEEECCC-----CCCEEEEE
T ss_pred CCEEeccCCCcccCCCCEEEEEEEecCCCCcccccCCcccEEEECCCccceeeeeccCCEEEEEeCCCCCCCccEEEEEe
Confidence 58999999999999999999999998863210 00134678999875432 245677899999998644 4555544
Q ss_pred eCCCCccchhhccccCCccc
Q 005011 240 LDGHKPISQVLNFEYRSPQL 259 (719)
Q Consensus 240 ~~g~~~ls~~~~f~y~~~~~ 259 (719)
..+. ......|.|.++.+
T Consensus 621 ~~~~--~~~~~~FtY~~P~I 638 (727)
T 2uzx_B 621 NGHG--TTQYSTFSYVDPVI 638 (727)
T ss_dssp CSSC--EEEEECCBCCCC--
T ss_pred CCcc--eeccccccccccee
Confidence 3332 23345788875543
No 134
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=95.86 E-value=0.014 Score=68.97 Aligned_cols=43 Identities=26% Similarity=0.499 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 005011 588 FLNMRRQAIKIQAAFRGFQVRKQYGKI---LWSVGVLEKAILRWRL 630 (719)
Q Consensus 588 ~~~~r~aai~IQa~~Rg~~~R~~y~~~---~~a~~~iQ~~~R~~r~ 630 (719)
-..+...++.||++|||++.|++|+++ +.|+.+||+.||+|..
T Consensus 775 ~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~ 820 (837)
T 1kk8_A 775 DERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLV 820 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556789999999999999999998 5789999999999943
No 135
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.44 E-value=0.0081 Score=67.14 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=68.8
Q ss_pred CCCceeeEEecCCCccCCCCeEEEEEccCcCccccCCCcceEEEcCCchhhHHHhhccceeeecCCCCC-CcceEEEEeC
Q 005011 163 PEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSP-GLFLLYMSLD 241 (719)
Q Consensus 163 ~~~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~~-G~v~l~v~~~ 241 (719)
+.+...|++|+|..+.. |++|+|+|..|.+ ......++||..+..-.-+....|.|.+|.+.. |.+++.|...
T Consensus 14 p~~p~~i~~~~P~~G~~--~t~~~I~G~nFg~----d~~~i~V~~~~~~a~v~~~~~~~i~~~vp~~~~~G~~~v~v~~~ 87 (496)
T 3kya_A 14 PSKPVAISDFTPKEGGA--YQKLLIYGENFGT----DVSKVKVKIGGKDAIVINVKSTYVYCFVPSGAFSGEIEITVGEG 87 (496)
T ss_dssp TTSCCEEEEEECSEECT--TCEEEEEEECCCS----CGGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEESCG
T ss_pred CCCCcEEEEEcCCCCCC--CCEEEEEeecCCC----CcceeEEEECCEEEEEEEECCCEEEEEECCCCCCCcEEEEEEec
Confidence 45668999999999987 7999999998864 246799999998876556788899999999985 8888877654
Q ss_pred CC--CccchhhccccCCcc
Q 005011 242 GH--KPISQVLNFEYRSPQ 258 (719)
Q Consensus 242 g~--~~ls~~~~f~y~~~~ 258 (719)
.. .+. ....|+|....
T Consensus 88 ~~~~~~~-~~~~F~Y~~~~ 105 (496)
T 3kya_A 88 ENAVTTT-ASTTFSYEKKM 105 (496)
T ss_dssp GGCEEEE-CSSCCEECCCE
T ss_pred CCceEEE-ecceEEEEEEE
Confidence 32 222 24678887643
No 136
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=95.28 E-value=0.0031 Score=73.98 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=1.5
Q ss_pred ceeeEEecCCCccCCCCeEEEEEccCcCccccCCCcceEEEcCCchhhHHHhhccceeeecCCCC-CCcceEEEEeCCCC
Q 005011 166 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS-PGLFLLYMSLDGHK 244 (719)
Q Consensus 166 l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~-~G~v~l~v~~~g~~ 244 (719)
.+.|+.++|.+++..||+.|+|+|.+|... ....+.||..+..-..+++..+.|.+|+.. +|.+++.|.-+|..
T Consensus 635 ~P~I~sisP~~G~~sGGt~ITI~G~nf~~~-----~~~~V~ig~~~C~i~~~s~t~I~C~tP~~~~~g~~~V~V~idg~~ 709 (727)
T 2uzx_B 635 DPVITSISPKYGPMAGGTLLTLTGNYLNSG-----NSRHISIGGKTCTLKSVSNSILECYTPAQTISTEFAVKLKIDLAN 709 (727)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cceeEEECCCccccCCCEEEEEEEECCCCC-----CceEEEECCEEeeEEeecCCEEEEEcCCCCCCceEEEEEEECCEE
Confidence 688999999999999999999999998643 346788998776655678889999999986 78888888887753
No 137
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.12 E-value=0.013 Score=63.96 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=69.4
Q ss_pred CCCceeeEEecCCCccCCCCeEEEEEccCcCccccCCCcceEEEcCC----chhhHHHhhccceeeecCCCCCCcceEEE
Q 005011 163 PEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGE----VRVPAEFVQAGVYRCFLPPHSPGLFLLYM 238 (719)
Q Consensus 163 ~~~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~~~~~~ac~fG~----~ev~~~li~~Gvl~c~~p~~~~G~v~l~v 238 (719)
+.+...|++|+|..+. .|++|+|.|.+|.+. .....++||+ .+..-..+....+.|.+|.+.+|..++.|
T Consensus 14 ~~~~~~~~~~~p~~g~--~~~~~~i~g~nfg~~----~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~vp~~~~g~~~i~v 87 (409)
T 3hrp_A 14 PNQPVTVESFMPVEGK--LREKVIVKGSNFGTD----KSKVKVYFVDEAAERLSTVIGIDNNTLYCLAPRQLPGGNRIKV 87 (409)
T ss_dssp TTSCCEEEEEECSEEC--TTCEEEEEEECCCSC----GGGEEEEEECSSCEEEEEEEEEETTEEEEECCSCCSEEEEEEE
T ss_pred CCCCcEEEEEcCCCCC--CCcEEEEEeEcCCCC----ccceEEEECCcccceEEEEEEECCCEEEEEECCCCCCcEEEEE
Confidence 4556799999999987 799999999988642 4668999999 66666667888999999999999888888
Q ss_pred EeCCCCccchhhccccCCc
Q 005011 239 SLDGHKPISQVLNFEYRSP 257 (719)
Q Consensus 239 ~~~g~~~ls~~~~f~y~~~ 257 (719)
...+.+ ...-..|.|...
T Consensus 88 ~~~~~~-~~~~~~F~y~~~ 105 (409)
T 3hrp_A 88 IVDGKE-VTTDGTFKYEQA 105 (409)
T ss_dssp EETTEE-EECSSCEEECCC
T ss_pred EECCee-EEEeeeEEEecc
Confidence 877753 233356777654
No 138
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=94.92 E-value=0.029 Score=61.64 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCCceeeEEecCCCccCCCCeEEEEEccCcCccccCCCcceEEEcCCchhhHHHhhccceeeecCCCC-CCcceEEEEeC
Q 005011 163 PEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS-PGLFLLYMSLD 241 (719)
Q Consensus 163 ~~~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~-~G~v~l~v~~~ 241 (719)
+.+...|++|+|..+.. |++|+|.|.+|.+ ......++||..+..-.-.+...|.|.+|+.. .|.+.+.|..+
T Consensus 16 ~~~p~~i~~~~P~~g~~--~~~~~i~G~nfg~----~~~~~~v~~~~~~a~v~~~~~~~i~~~vp~~~~~g~~~v~v~~~ 89 (433)
T 4hw6_A 16 PKEEIVVEKFLPTEGRK--GTRVVVYGRNFGN----DVSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVSVVGD 89 (433)
T ss_dssp TTSCCEEEEEESSEECT--TCEEEEEEECCCS----CGGGEEEEETTEEEEEEEECSSEEEEECCTTCTTCCEEEEEECT
T ss_pred CCCCCEEEEECCCCCCC--CCEEEEEeECCCC----CcceeEEEECCEEEEEEEeCCCEEEEEeCCCCCCCCEEEEEecC
Confidence 34557999999999966 9999999998864 24679999999887655577789999999997 48888887766
Q ss_pred CCC---ccchhhccccCCcc
Q 005011 242 GHK---PISQVLNFEYRSPQ 258 (719)
Q Consensus 242 g~~---~ls~~~~f~y~~~~ 258 (719)
+.. .......|.|....
T Consensus 90 ~~~~~~~~~~~~~F~y~~~~ 109 (433)
T 4hw6_A 90 DEAELKSGVCEAKFDYQYNY 109 (433)
T ss_dssp TSCEEEEEECSSCCEECCCE
T ss_pred CcceeeEEEeeeEEEEEeee
Confidence 642 12334677777644
No 139
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.28 E-value=0.1 Score=45.84 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=64.3
Q ss_pred CCCCceeeEEecCCCccCCCCeEEEEEccCcCccccC-----C---CcceEEEcCCchhhHHHhhccceeeecCCCC---
Q 005011 162 VPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHL-----S---KSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS--- 230 (719)
Q Consensus 162 ~~~~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~-----~---~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~--- 230 (719)
+...++.|...|-.-++..||-+|.|+|..+..-..+ . ...|- ++|+.. +...+...|+|.+||-.
T Consensus 4 ~a~~~P~I~k~s~~s~~v~GG~Ev~Ll~~k~~kd~kV~F~E~~~dG~~~WE-~~a~f~--~d~~~q~aivf~tPpY~~~~ 80 (114)
T 2yrp_A 4 GSSGLPQVEAYSPSACSVRGGEELVLTGSNFLPDSKVVFIERGPDGKLQWE-EEATVN--RLQSNEVTLTLTVPEYSNKR 80 (114)
T ss_dssp CCCSCCEEEEEESSCEETTCCSEEEEEEESCCTTCEEEEECBCTTSCBCCC-CBCCBC--TTTCBTTEEEEECCCCSCCS
T ss_pred CCCCCCEEEEecCcccccCCCCEEEEEecccCCCCEEEEEEECCCCCcceE-EeeEEC--hHHcccccEEEecCCCCCCc
Confidence 3567999999999999999999999999866311110 0 01132 234443 35567788999999874
Q ss_pred ---CCcceEEEEeCCCCccchhhccccCCc
Q 005011 231 ---PGLFLLYMSLDGHKPISQVLNFEYRSP 257 (719)
Q Consensus 231 ---~G~v~l~v~~~g~~~ls~~~~f~y~~~ 257 (719)
|=.|.|++ ++|.-..|+...|+|...
T Consensus 81 I~~pV~V~~~l-~~~~rk~Se~~~FtY~P~ 109 (114)
T 2yrp_A 81 VSRPVQVYFYV-SNGRRKRSPTQSFRFLPV 109 (114)
T ss_dssp CSSCEEEEEEE-ECSSSCBCCCEEEEEECC
T ss_pred cCCCeEEEEEE-CCCCCcccCCcCcEEech
Confidence 45667777 555445799999999863
No 140
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=93.14 E-value=0.073 Score=35.36 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhhHHHH
Q 005011 551 IAALKIQHAFRNFEVR 566 (719)
Q Consensus 551 ~Aa~~iQ~~~R~~~~r 566 (719)
.+|++||++||+|+.+
T Consensus 7 ~aA~vIQrA~R~yl~r 22 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQ 22 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 141
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=93.00 E-value=0.058 Score=34.72 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhhhHHH
Q 005011 550 IIAALKIQHAFRNFEV 565 (719)
Q Consensus 550 ~~Aa~~iQ~~~R~~~~ 565 (719)
+.||++||++||+|+.
T Consensus 6 e~aA~vIQrA~R~yl~ 21 (27)
T 2kxw_B 6 EVSAIVIQRAYRRYLL 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555544
No 142
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=92.86 E-value=0.9 Score=41.63 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005011 592 RRQAIKIQAAFRGFQVRKQYGKILWSVGVL 621 (719)
Q Consensus 592 r~aai~IQa~~Rg~~~R~~y~~~~~a~~~i 621 (719)
+.++++||+.+|||++|++|+........+
T Consensus 45 ~~~~i~iQktvR~~L~rkkhkPRi~g~~kv 74 (148)
T 3gn4_A 45 AEACIKMQKTIRMWLCKRRHKPRIDGLVKV 74 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345566666666666666665554444333
No 143
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=92.34 E-value=0.5 Score=43.36 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005011 571 AAARIQHRFRSWKVRKEFLNMRRQAIKIQAA 601 (719)
Q Consensus 571 aai~IQs~~Rg~~~Rk~~~~~r~aai~IQa~ 601 (719)
+++.||+.+|||++|+.|+..-....++.+.
T Consensus 47 ~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L 77 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKPRIDGLVKVGTL 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 7888888888888888887655555444433
No 144
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=90.68 E-value=0.17 Score=33.55 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005011 569 MAAAARIQHRFRSWKVRKEF 588 (719)
Q Consensus 569 ~~aai~IQs~~Rg~~~Rk~~ 588 (719)
..+|+.||++||+|+.|+..
T Consensus 6 e~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 6 EVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999988753
No 145
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=89.67 E-value=0.25 Score=31.80 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005011 569 MAAAARIQHRFRSWKVRK 586 (719)
Q Consensus 569 ~~aai~IQs~~Rg~~~Rk 586 (719)
..||+.||++||+|+.++
T Consensus 6 e~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 6 EVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 347788888888887764
No 146
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=86.95 E-value=0.97 Score=54.72 Aligned_cols=40 Identities=10% Similarity=0.236 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005011 571 AAARIQHRFRSWKVRKEFLNMRRQAIKIQAAFRGFQVRKQY 611 (719)
Q Consensus 571 aai~IQs~~Rg~~~Rk~~~~~r~aai~IQa~~Rg~~~R~~y 611 (719)
+++.|| .+|||++|++|++++++++.||..+|+...|+.+
T Consensus 777 ~~~~iq-~~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 777 LAELVK-RVNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555555 5799999999999999999999988887655543
No 147
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=78.69 E-value=1.4 Score=51.93 Aligned_cols=27 Identities=33% Similarity=0.645 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005011 591 MRRQAIKIQAAFRGFQVRKQYGKILWS 617 (719)
Q Consensus 591 ~r~aai~IQa~~Rg~~~R~~y~~~~~a 617 (719)
+..+++.||++||||+.|++|++++.+
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~~~~r~a 793 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKYMRMRRG 793 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777777776654
No 148
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=78.34 E-value=1.8 Score=50.91 Aligned_cols=26 Identities=46% Similarity=0.843 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005011 570 AAAARIQHRFRSWKVRKEFLNMRRQA 595 (719)
Q Consensus 570 ~aai~IQs~~Rg~~~Rk~~~~~r~aa 595 (719)
.+++.||++||||++|++|+++|+++
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777777777777777777777653
No 149
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=74.98 E-value=3.7 Score=49.70 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhhhhHH
Q 005011 517 EAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFE 564 (719)
Q Consensus 517 ~aa~~IQ~~~R~~~~R~r~~~~r~~~~~~~~~~~~Aa~~iQ~~~R~~~ 564 (719)
.+++ +|+.+|||+.|++|++++ .+++.||+.+|++.
T Consensus 776 ~~~~-~iq~~r~~l~r~~~~k~~-----------~~a~~i~~~~r~~~ 811 (1052)
T 4anj_A 776 HLAE-LVKRVNHWLICSRWKKVQ-----------WCSLSVIKLKNKIK 811 (1052)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4444 455689999999998777 66666666555543
No 150
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=72.29 E-value=5.7 Score=35.09 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=57.2
Q ss_pred eeeEEecCCCccCCCCeEEEEEccCcCc-cccC-------CCcceEEEcCCchhhHHHhhccceeeecCCCC------CC
Q 005011 167 FSITDVSPAWAFSNEKTKILVTGFFHKD-CLHL-------SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS------PG 232 (719)
Q Consensus 167 ~~I~d~sP~w~~~~gg~kVlI~G~~~~~-~~~~-------~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~------~G 232 (719)
..|...|=.-+++.||.+|.|+|..+.- --.+ ....|-+ +|+.. ...+-....++|.+||-. |=
T Consensus 4 l~I~r~s~~s~~v~GG~Ev~Llc~kv~K~dikV~F~e~~~~g~~WE~-~~~f~-~~dvh~Q~aIvf~tPpY~~~~I~~pV 81 (119)
T 1ikn_C 4 LKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEG-FGDFS-PTDVHRQFAIVFKTPKYKDVNITKPA 81 (119)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTSEEEEEEEECTTSCEEEE-ECCCC-GGGEETTTEEEEECCCCSCTTCSSCE
T ss_pred CEEEEeeCCccccCCCCEEEEEeccccCCCCEEEEEEeCCCCCceEE-eEEeC-hhhccccceEEEECCCCCCCCcCCCE
Confidence 6799999999999999999999986641 1000 1122432 33321 122334578899999874 33
Q ss_pred cceEEEEeCCCCccchhhccccCCc
Q 005011 233 LFLLYMSLDGHKPISQVLNFEYRSP 257 (719)
Q Consensus 233 ~v~l~v~~~g~~~ls~~~~f~y~~~ 257 (719)
.|.+++-.......|+...|+|...
T Consensus 82 ~V~i~L~r~sd~~~Sep~~FtY~P~ 106 (119)
T 1ikn_C 82 SVFVQLRRKSDLETSEPKPFLYYPE 106 (119)
T ss_dssp EEEEEEEETTTCCBCCCEEEEEECC
T ss_pred EEEEEEEcCCCCCccCCcccEeecC
Confidence 4555665533335799999999863
No 151
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A
Probab=71.01 E-value=8.2 Score=33.77 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=57.9
Q ss_pred eeeEEecCCCccCCCCeEEEEEccCcCccccC----CCcceEEEcCCchhhHHHhhccceeeecCCCC------CCcceE
Q 005011 167 FSITDVSPAWAFSNEKTKILVTGFFHKDCLHL----SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS------PGLFLL 236 (719)
Q Consensus 167 ~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~----~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~------~G~v~l 236 (719)
..|...|=.-+++.||-+|.++|..+.- ++. ....|-+. |+..- ..+.....++|.+||-. |=.|.+
T Consensus 4 L~I~r~s~~sg~v~GG~Ev~LLc~kv~K-~Di~VrF~e~~WE~~-g~f~~-~Dvh~Q~aIvfktPpY~~~~I~~pV~V~i 80 (114)
T 1my7_A 4 LKICRVNRRSGSCLGGDEIFLLCDKVQK-EDIEVYFTGPGWEAR-GSFSQ-ADVHRQVAIVFRTPPYADPSLQAPVRVSM 80 (114)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCT-TSCEEEEEETTEEEE-CBCCG-GGBCTTSEEEEECCCCSCTTCCSCEEEEE
T ss_pred cEEEEecCCceecCCCcEEEEEeccccc-CCCEEEEEccCeEEe-cccCh-hhcccceeEEEECCCCCCCccCCCEEEEE
Confidence 5799999999999999999999986532 111 11245543 32221 23446678899999874 334555
Q ss_pred EEEeCCCCccchhhccccCC
Q 005011 237 YMSLDGHKPISQVLNFEYRS 256 (719)
Q Consensus 237 ~v~~~g~~~ls~~~~f~y~~ 256 (719)
++-..+....|+...|+|..
T Consensus 81 ~L~r~sd~~~Sep~~FtY~P 100 (114)
T 1my7_A 81 QLRRPSDRELSEPMEFQYLP 100 (114)
T ss_dssp EEEETTTTEECCCEEEEEEC
T ss_pred EEEeCCCCCcCCCcccEEec
Confidence 55543334679999999986
No 152
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Probab=63.25 E-value=14 Score=33.22 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=57.7
Q ss_pred eeeEEecCCCccCCCCeEEEEEccCcCccccC----CCcceEEEcCCchhhHHHhhccceeeecCCCC------CCcceE
Q 005011 167 FSITDVSPAWAFSNEKTKILVTGFFHKDCLHL----SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS------PGLFLL 236 (719)
Q Consensus 167 ~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~----~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~------~G~v~l 236 (719)
..|..+|=.-+++.||-||.|+|..+.- ++. ....|-+. |+..- +.+.....++|.+||-. |=.|.+
T Consensus 4 L~I~r~s~~sg~v~GG~Ev~LLceKv~K-~Di~VrF~e~~WE~~-g~f~~-~dVh~Q~AIvfkTPpY~~~~I~~pV~V~i 80 (136)
T 1oy3_C 4 LKICRVNRNSGSCLGGDEIFLLCDKVQK-EDIEVYFTGPGWEAR-GSFSQ-ADVHRQVAIVFRTPPYADPSLQAPVRVSM 80 (136)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCT-TSCEEEEEETTEEEE-CBCCG-GGBCTTSEEEEECCCCSCTTCCSCEEEEE
T ss_pred cEEEEecCCccccCCCcEEEEEcccccc-CCCEEEEEccCeEEe-cccCh-hheecceEEEEECCCCCCccCCCCeEEEE
Confidence 5799999999999999999999975532 111 11246553 22221 23345667889999873 344555
Q ss_pred EEEeCCCCccchhhccccCC
Q 005011 237 YMSLDGHKPISQVLNFEYRS 256 (719)
Q Consensus 237 ~v~~~g~~~ls~~~~f~y~~ 256 (719)
++-.-+....|+...|+|..
T Consensus 81 qL~rpsd~~~Sep~~F~Y~P 100 (136)
T 1oy3_C 81 QLRRPSDRELSEPMEFQYLP 100 (136)
T ss_dssp EEEETTTTEECCCEEEEEEC
T ss_pred EEEeCCCCCccCCcceEEec
Confidence 66543333679999999986
No 153
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=62.45 E-value=9.9 Score=32.82 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=54.2
Q ss_pred eeeEEecCCCccCCCCeEEEEEccCcCc-cccC-------CCcceEEEcCCchhhHHHhhccceeeecCCCC------CC
Q 005011 167 FSITDVSPAWAFSNEKTKILVTGFFHKD-CLHL-------SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS------PG 232 (719)
Q Consensus 167 ~~I~d~sP~w~~~~gg~kVlI~G~~~~~-~~~~-------~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~------~G 232 (719)
..|.+.|=.-+++.||-+|.++|..+.- --.+ ....|-+ +|+..- ..+-....++|.+||-. |=
T Consensus 4 l~I~r~s~~s~~v~GG~Ev~Llc~kv~K~dikV~F~E~~~~g~~WE~-~~~f~~-~dvh~Q~aIvf~tPpY~~~~I~~pV 81 (106)
T 1u36_A 4 LKIVRMDRTAGCVTGGEEIWLLCDKVQKDDIQIRFYEEEENGGVWEG-FGDFSP-TDVHRQFAICFKTPKYKDVNITKPA 81 (106)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEECC----CEEE-ECBCCG-GGEETTTEEEEECCCCSCTTCSSCE
T ss_pred CEEEEeeCCccccCCCCEEEEEeccccCCCCEEEEEEeCCCCCceEE-eeecCH-HHcccceEEEEECCCCCCCccCCCE
Confidence 6799999999999999999999986641 1000 0112332 222211 12224577889999874 33
Q ss_pred cceEEEEeCCCCccchhhccccCC
Q 005011 233 LFLLYMSLDGHKPISQVLNFEYRS 256 (719)
Q Consensus 233 ~v~l~v~~~g~~~ls~~~~f~y~~ 256 (719)
.|.+++-.......|+...|+|..
T Consensus 82 ~V~~~l~r~sd~~~Sep~~FtY~P 105 (106)
T 1u36_A 82 SVFVQLRRKSDLETSEPKPFLYYP 105 (106)
T ss_dssp EEEEEEECTTTCCBCCCEEEEEEC
T ss_pred EEEEEEEcCCCCCccCCcCcEEcC
Confidence 455555543333579999999864
No 154
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=59.00 E-value=9.4 Score=35.81 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005011 571 AAARIQHRFRSWKVRKEF 588 (719)
Q Consensus 571 aai~IQs~~Rg~~~Rk~~ 588 (719)
||+.||++||.|+.|+.+
T Consensus 132 aA~~IQra~R~~~~r~~~ 149 (168)
T 4dck_A 132 SAMVIQRAFRRHLLQRSL 149 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 444445555554444443
No 155
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=58.16 E-value=10 Score=35.62 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Q 005011 547 AQNIIAALKIQHAFRNFEVRKKMA 570 (719)
Q Consensus 547 ~~~~~Aa~~iQ~~~R~~~~rk~~~ 570 (719)
.+...||++||++||.|+.|+...
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 355667777777777777665544
No 156
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A
Probab=58.16 E-value=17 Score=37.09 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=57.2
Q ss_pred CceeeEEecCCCccCCCCeEEEEEccCcCccccC----CCcceEEEcCCchhhHHHhhccceeeecCCCC------CCcc
Q 005011 165 HLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHL----SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS------PGLF 234 (719)
Q Consensus 165 ~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~----~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~------~G~v 234 (719)
+-..|.++|-.-+++.||-||.|+|..+.- ++. ....|-+ +|+.. ...+-....++|.+||-. |=.|
T Consensus 189 ~eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K-~dikV~F~e~~WE~-~~~f~-~~Dvh~Q~aIvf~tPpY~~~~I~~pV~V 265 (288)
T 2v2t_A 189 SELRICRINKESGPCTGGEELYLLCDKVQK-EDISVVFSTASWEG-RADFS-QADVHRQIAIVFKTPPYEDLEISEPVTV 265 (288)
T ss_dssp SCCCBCCCSCSCCCSSCCCEEEEEBSSCCT-TSEEEEEECSSCEE-ECCCC-GGGEETTTEEEEECCCCTTCCCSSCCBC
T ss_pred CCCeEEEeeCCccccCCCCEEEEEeccccc-CCCEEEEEecceEE-eeEeC-hhhccceeEEEEECCCCCCCCcCCCeEE
Confidence 346899999999999999999999976531 110 0122322 22221 122234457889999874 4566
Q ss_pred eEEEEeCCCCccchhhccccCC
Q 005011 235 LLYMSLDGHKPISQVLNFEYRS 256 (719)
Q Consensus 235 ~l~v~~~g~~~ls~~~~f~y~~ 256 (719)
.+++.......+|+...|+|..
T Consensus 266 ~iqL~r~sd~~~Sep~~FtY~P 287 (288)
T 2v2t_A 266 NVFLQRLTDGVCSEPLPFTYLP 287 (288)
T ss_dssp CEEEEETTTCCBCCCBCCBCCC
T ss_pred EEEEEeCCCCCcCCCcCcEEcC
Confidence 6777663333679999999964
No 157
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=57.51 E-value=5.2 Score=34.78 Aligned_cols=91 Identities=10% Similarity=0.035 Sum_probs=57.6
Q ss_pred CCceeeEEecCCCccCCCCeEEEEEccCcCc-cccC--CCcceEEEcCCchhhHHHhhccceeeecCCCC----CC--cc
Q 005011 164 EHLFSITDVSPAWAFSNEKTKILVTGFFHKD-CLHL--SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS----PG--LF 234 (719)
Q Consensus 164 ~~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~-~~~~--~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~----~G--~v 234 (719)
..-..|.+.|=.-+++.||-+|.++|..+.- --.+ ..-.|-+ +|+.. ...+.....++|.+||-. .. .|
T Consensus 10 ~~~L~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~V~F~e~~WE~-~~~f~-~~Dvh~Q~aIvf~tPpY~~~~I~~pV~V 87 (110)
T 1zk9_A 10 TSELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSTASWEG-RADFS-QADVHRQIAIVFKTPPYEDLEISEPVTV 87 (110)
T ss_dssp CTTSCEEEESCSCCCTTCCCCCCEEESCCCTTSCCCEEEETTEEE-ECCCC-GGGCCCCCCCCCCCCCCSCTTCSSCEEE
T ss_pred CCCCEEEEecCCccccCCCCEEEEEecccccCCcEEEEechheee-ccccC-cccccccceEEEECCCCCCcccCCCeEE
Confidence 3458899999999999999999999986532 1110 0114544 44421 123445677889999873 22 33
Q ss_pred eEEEEeCCCCccchhhccccCC
Q 005011 235 LLYMSLDGHKPISQVLNFEYRS 256 (719)
Q Consensus 235 ~l~v~~~g~~~ls~~~~f~y~~ 256 (719)
.+++-..+....|+...|+|..
T Consensus 88 ~i~L~r~sd~~~Sep~~FtY~P 109 (110)
T 1zk9_A 88 NVFLQRLTDGVCSEPLPFTYLP 109 (110)
T ss_dssp EECCBCTTTCCBCCCEEEEECC
T ss_pred EEEEEeCCCCCccCCcCcEEcC
Confidence 3444432344679999999864
No 158
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=46.28 E-value=19 Score=39.86 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=56.9
Q ss_pred eeeEEecCCCccCCCCeEEEEEccCcCccccC----CCcceEEE--cCCchhhHHHhhccceeeecCCCC------CCcc
Q 005011 167 FSITDVSPAWAFSNEKTKILVTGFFHKDCLHL----SKSNMFCV--CGEVRVPAEFVQAGVYRCFLPPHS------PGLF 234 (719)
Q Consensus 167 ~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~----~~~~~ac~--fG~~ev~~~li~~Gvl~c~~p~~~------~G~v 234 (719)
..|.++|-.-+++.||-+|.|+|..+.- ++. ..-.|-+. |...+ +.....++|.+||-. |=.|
T Consensus 177 L~I~r~s~~sgsv~GG~Ev~LLc~kv~K-~DikVrF~e~~WE~~a~f~~~D----vh~Q~AIvfkTPpY~~~~I~~pV~V 251 (540)
T 2o61_A 177 LKICRVNRNSGSCLGGDEIFLLCDKVQK-EDIEVYFTGPGWEARGSFSQAD----VHRQVAIVFRTPPYADPSLQAPVRV 251 (540)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESSCBT-TBCEEEEEETTEEEECBCCGGG----EETTTEEEEECCCCSSSCCSSCEEE
T ss_pred CeEEEecCCccccCCCCeEEEEeccccc-CCcEEEEecccceeccccChhh----hcceeeEEEeCCCCCCCCCCCCeEE
Confidence 4799999999999999999999986632 111 01124332 33223 335577889999874 3345
Q ss_pred eEEEEeCCCCccchhhccccCCcc
Q 005011 235 LLYMSLDGHKPISQVLNFEYRSPQ 258 (719)
Q Consensus 235 ~l~v~~~g~~~ls~~~~f~y~~~~ 258 (719)
.+++...+....|+...|+|....
T Consensus 252 ~iqL~r~sd~~~Sep~~FtY~P~~ 275 (540)
T 2o61_A 252 SMQLRRPSDRELSEPMEFQYLPDG 275 (540)
T ss_dssp EEEEECGGGCCBCCCEEEEEECC-
T ss_pred EEEEEeCCCCCcCCCcCcEEecCC
Confidence 556654223356999999999754
No 159
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A
Probab=46.10 E-value=27 Score=35.60 Aligned_cols=90 Identities=12% Similarity=0.101 Sum_probs=57.6
Q ss_pred CceeeEEecCCCccCCCCeEEEEEccCcCccccC----CCcceEEEcCCchhhHHHhhccceeeecCCCC------CCcc
Q 005011 165 HLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHL----SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS------PGLF 234 (719)
Q Consensus 165 ~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~----~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~------~G~v 234 (719)
+-..|.++|-.-+++.||-+|.|+|..+.- ++. ..-.|-+. |+..- ..+-....++|.+||-. |=.|
T Consensus 174 ~eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K-~di~V~F~e~~WE~~-~~f~~-~dvh~Q~aIvf~tPpY~~~~I~~pV~V 250 (286)
T 1ikn_A 174 AELKICRVNRNSGSCLGGDEIFLLCDKVQK-EDIEVYFTGPGWEAR-GSFSQ-ADVHRQVAIVFRTPPYADPSLQAPVRV 250 (286)
T ss_dssp CCCCEEEESCSEEETTCCCEEEEEESCCCT-TSCEEEEEETTEEEE-CBCCG-GGBCTTSEEEEECCCCSCTTCSSCEEE
T ss_pred CCCeEEEecCCccccCCCCEEEEEeccccc-CCCEEEEeccceEEe-eecCH-HHhccceeEEEECCCCCCCCcCCCEEE
Confidence 445899999999999999999999986631 110 11135432 22211 12224567889999874 3345
Q ss_pred eEEEEeCCCCccchhhccccCCc
Q 005011 235 LLYMSLDGHKPISQVLNFEYRSP 257 (719)
Q Consensus 235 ~l~v~~~g~~~ls~~~~f~y~~~ 257 (719)
.+++-..+....|+...|+|...
T Consensus 251 ~i~L~r~sd~~~Sep~~FtY~P~ 273 (286)
T 1ikn_A 251 SMQLRRPSDRELSEPMEFQYLPD 273 (286)
T ss_dssp EEEEECTTTCCBCCCEEEEEECC
T ss_pred EEEEEeCCCCCcCCCcCcEEecC
Confidence 55555433346799999999874
No 160
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=44.97 E-value=32 Score=34.96 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=59.4
Q ss_pred CceeeEEecCCCccCCCCeEEEEEccCcCccccC-------CCcceEEEcCCchhhHHHhhccceeeecCCCC------C
Q 005011 165 HLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHL-------SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS------P 231 (719)
Q Consensus 165 ~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~-------~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~------~ 231 (719)
..+.|.++|-.-+++.||-+|.|+|..+..--.+ ....|-+ ||+.. ...+....++|.+||-. |
T Consensus 180 ~~l~I~r~s~~sg~v~GG~Ev~Llc~kv~KdikVrF~E~~~d~~~WE~-~~~f~--~~dvhQ~aIvf~tPpY~~~~I~~p 256 (281)
T 1imh_C 180 GVPEILKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQENVSDENSWKS-EAEID--MELFHQNHLIVKVPPYHDQHITLP 256 (281)
T ss_dssp CCCEEEEESCCEEETTCCCEEEEEEECCCTTCEEEEESSSCTTCSCEE-EECBC--GGGCCSSEEEEECCCCSCTTCSSC
T ss_pred CCCeEEEEecCccccCCCcEEEEEeeccCCCcEEEEEEeCCCCCceEE-eEEeC--hhhcccceEEEECCCCccCccCCC
Confidence 5799999999999999999999999754310000 1234655 55544 22334678999999874 3
Q ss_pred CcceEEEEeCCCCccchhhccccCC
Q 005011 232 GLFLLYMSLDGHKPISQVLNFEYRS 256 (719)
Q Consensus 232 G~v~l~v~~~g~~~ls~~~~f~y~~ 256 (719)
=.|.+++-. +....|+...|+|..
T Consensus 257 V~V~iqL~r-sd~~~S~p~~FtY~P 280 (281)
T 1imh_C 257 VSVGIYVVT-NAGRSHDVQPFTYTP 280 (281)
T ss_dssp EEEEEEEEE-TTEECCSCEEEEEEC
T ss_pred eEEEEEEEe-CCCCccCCcCceecC
Confidence 345566655 333568899999864
No 161
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A
Probab=42.41 E-value=41 Score=34.20 Aligned_cols=88 Identities=10% Similarity=0.068 Sum_probs=56.0
Q ss_pred ceeeEEecCCCccCCCCeEEEEEccCcCcc------ccCCCcceEEEcCCchhhHHHhhccceeeecCCCC------CCc
Q 005011 166 LFSITDVSPAWAFSNEKTKILVTGFFHKDC------LHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS------PGL 233 (719)
Q Consensus 166 l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~------~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~------~G~ 233 (719)
-..|.++|-.-+++.||-+|.|+|..+.-. .......|-+ +|+..- ..+-....++|.+||-. |=.
T Consensus 185 eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~Di~V~F~E~~~~gWE~-~~~f~~-~dvh~Q~aIvf~tPpY~~~~I~~pV~ 262 (285)
T 1a3q_A 185 NLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDENGWQA-FGDFSP-TDVHKQYAIVFRTPPYHKMKIERPVT 262 (285)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESSCCTTTEEEEEEECSSSCEEE-ECBCCG-GGEETTTEEEEECCCCSCTTCSSCEE
T ss_pred CCeEEEecCCccccCCCCEEEEEeccccCCCCEEEEEecCCCCCEE-eeEeCH-HHccceeeEEEECCCCCCCCCCCCeE
Confidence 358999999999999999999999865311 0111122544 222211 12223567889999874 334
Q ss_pred ceEEEEeCCCCccchhhccccC
Q 005011 234 FLLYMSLDGHKPISQVLNFEYR 255 (719)
Q Consensus 234 v~l~v~~~g~~~ls~~~~f~y~ 255 (719)
|.+++........|+...|+|.
T Consensus 263 V~iqL~r~sd~~~Sep~~FtY~ 284 (285)
T 1a3q_A 263 VFLQLKRKRGGDVSDSKQFTYY 284 (285)
T ss_dssp EEEEEEETTTCCBCCCEEEEEE
T ss_pred EEEEEEeCCCCCccCCCCceeC
Confidence 5556655333457999999985
No 162
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B
Probab=39.59 E-value=54 Score=33.96 Aligned_cols=91 Identities=10% Similarity=0.054 Sum_probs=57.6
Q ss_pred CceeeEEecCCCccCCCCeEEEEEccCcCc-cccC-----C--CcceEEEcCCchhhHHHhhccceeeecCCCC------
Q 005011 165 HLFSITDVSPAWAFSNEKTKILVTGFFHKD-CLHL-----S--KSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS------ 230 (719)
Q Consensus 165 ~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~-~~~~-----~--~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~------ 230 (719)
+-..|.++|-.-+++.||-+|.|+|..+.- --.+ . ...|-+ +|+.. +..+-....++|.+||-.
T Consensus 208 ~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~VrF~E~~~~g~~WE~-~g~f~-~~Dvh~Q~AIvfkTPpY~~~~I~~ 285 (325)
T 1nfk_A 208 SNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEG-FGDFS-PTDVHRQFAIVFKTPKYKDVNITK 285 (325)
T ss_dssp CCCCEEEESCSCEESSCCCEEEEEESCCCTTTEEEEEEECCCSSCCEEE-ECBCC-GGGBCTTSEEEEECCCTTSSCCCS
T ss_pred CCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEEEeCCCCCeeEE-eeeeC-HHHccceeEEEEECCCCCCCCcCC
Confidence 345899999999999999999999975531 1000 0 112443 22221 122234567889999874
Q ss_pred CCcceEEEEeCCCCccchhhccccCCc
Q 005011 231 PGLFLLYMSLDGHKPISQVLNFEYRSP 257 (719)
Q Consensus 231 ~G~v~l~v~~~g~~~ls~~~~f~y~~~ 257 (719)
|=.|.+++........|+...|+|...
T Consensus 286 pV~V~iqL~r~sd~~~Sep~~FtY~P~ 312 (325)
T 1nfk_A 286 PASVFVQLRRKSDLETSEPKPFLYYPE 312 (325)
T ss_dssp SEEEEEEEEETTTCCBCCCEEEEEECC
T ss_pred CeEEEEEEEcCCCCCccCCccceeecC
Confidence 334555555433336799999999863
No 163
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=38.40 E-value=6.3 Score=47.64 Aligned_cols=55 Identities=15% Similarity=0.034 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHH
Q 005011 572 AARIQHRFRSWKVRKEFLNMRRQAIKIQAAFRGFQVRKQYGKILW--SVGVLEKAIL 626 (719)
Q Consensus 572 ai~IQs~~Rg~~~Rk~~~~~r~aai~IQa~~Rg~~~R~~y~~~~~--a~~~iQ~~~R 626 (719)
+..++.|+|+...+..++..+.+++.||+++|++..++.+.+..+ ....||.+++
T Consensus 767 a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekpp~~~ek~rLeal~~ 823 (995)
T 2ycu_A 767 ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYN 823 (995)
T ss_dssp HHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 445667777777777677777777788888887777666655432 2344444443
No 164
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=37.34 E-value=36 Score=36.40 Aligned_cols=70 Identities=19% Similarity=0.138 Sum_probs=49.8
Q ss_pred CceeeEEecCCCccCCCCeEEEEEccCcCccccCCCcceEEEcCC-chhhHHH-h--hccceeeecCCCCC---CcceEE
Q 005011 165 HLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGE-VRVPAEF-V--QAGVYRCFLPPHSP---GLFLLY 237 (719)
Q Consensus 165 ~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~~~~~~ac~fG~-~ev~~~l-i--~~Gvl~c~~p~~~~---G~v~l~ 237 (719)
..+.|+.+||+.+ ..|..|.|.|.+|... -.+.||. +++.... + +...|+-.+|.... |.+ .
T Consensus 112 PaPtITSISpe~~--~aGd~VTItGsNF~~i-------skV~FgG~veaT~~~svs~S~T~ItVtVPaGA~~~sG~I--t 180 (439)
T 3orj_A 112 AAPSITKISNCMP--NVGEPIIVYGSGLTEI-------AKVVFPGNVVVTEGIISDLDGEYFMVDMPAGVSEEGGSI--F 180 (439)
T ss_dssp SCCEEEEESCSSC--CTTCEEEEEEECCTTC-------CEEEETTTEEECSSCEECTTSSEEEEECCTTCCTTCBCC--E
T ss_pred CCCEEEEeCCCCC--CCCCEEEEEccCCCce-------eEEEECCCeeEEEEEEecCCCCEEEEEecCCCcCCCceE--E
Confidence 4589999999875 6789999999999743 6788984 5554112 3 56678888898744 655 4
Q ss_pred EEeCCCCc
Q 005011 238 MSLDGHKP 245 (719)
Q Consensus 238 v~~~g~~~ 245 (719)
|...+++.
T Consensus 181 VvT~~GtA 188 (439)
T 3orj_A 181 VEGSNGGA 188 (439)
T ss_dssp EEETTEEE
T ss_pred EEeCCCcE
Confidence 55655554
No 165
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=37.03 E-value=17 Score=38.56 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=48.4
Q ss_pred eEEEEEccCcCccccCCCcceEEEcCCchhhHHHhhccceeeecCCCC-----------CCcceEEEEeCCCCccchhhc
Q 005011 183 TKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS-----------PGLFLLYMSLDGHKPISQVLN 251 (719)
Q Consensus 183 ~kVlI~G~~~~~~~~~~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~-----------~G~v~l~v~~~g~~~ls~~~~ 251 (719)
.-|-|.|.+|. .++.+.||++++-..+-.+-.|.|..|+-. |-.||+.+-.+.+..-+....
T Consensus 343 amlEl~G~nF~-------~~L~VWFG~v~aeT~yR~~e~l~c~vP~~~~~~~~w~~~~~~~~Vpi~LVR~DGviy~t~~t 415 (422)
T 3iag_C 343 AMLELTGQNFT-------PNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGVIYSTSLT 415 (422)
T ss_dssp CEEEEEEESCC-------TTEEEEETTEECCEEEEETTEEEEECCCGGGTSTTCSSCCSCEEEEEEEEETTSEEEEEEEE
T ss_pred eEEEEEccCCC-------CCceEEECCCCceeEEeccceEEEeCCCHHHhccCccccCCceEEEEEEEecCCEEeeCCcc
Confidence 45778888885 569999999999988888888999999832 456787777666543344455
Q ss_pred cccC
Q 005011 252 FEYR 255 (719)
Q Consensus 252 f~y~ 255 (719)
|.|.
T Consensus 416 fty~ 419 (422)
T 3iag_C 416 FTYT 419 (422)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6554
No 166
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A*
Probab=31.98 E-value=80 Score=32.07 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=60.4
Q ss_pred CCCceeeEEecCCCccCCCCeEEEEEccCcCccccC----------CCcceEEEcCCchhhHHHhhccceeeecCCCC--
Q 005011 163 PEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHL----------SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS-- 230 (719)
Q Consensus 163 ~~~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~----------~~~~~ac~fG~~ev~~~li~~Gvl~c~~p~~~-- 230 (719)
...++.|.+.|-.-+++.||-+|.|+|..+.. +. ....|-+ +|+.. ........++|.+||-.
T Consensus 182 ~~~~l~I~r~s~~sg~v~GG~Ei~Llc~kv~K--DikVrF~E~~~dg~~~We~-~g~f~--~dvh~Q~AIvfkTPpY~~~ 256 (286)
T 1p7h_L 182 AHELPMVERQDTDSCLVYGGQQMILTGQNFTS--ESKVVFTEKTTDGQQIWEM-EATVD--KDKSQPNMLFVEIPEYRNK 256 (286)
T ss_dssp CCCCCEEEEESCSEEETTCCCEEEEEEESCCS--SCEEEEEEECSSSCEEEEE-EECBC--TTTCBTTEEEEECCCCSCT
T ss_pred CCCCCeEEEeccccccccCCcEEEEEecccCC--CcEEEEEEECCCCCcceEE-eEEeC--ccccccceEEEECCCCccC
Confidence 34578999999999999999999999976531 11 0123542 33433 23456688999999874
Q ss_pred ----CCcceEEEEeCCCCccchhhccccCC
Q 005011 231 ----PGLFLLYMSLDGHKPISQVLNFEYRS 256 (719)
Q Consensus 231 ----~G~v~l~v~~~g~~~ls~~~~f~y~~ 256 (719)
|=.|.+++-... -..|+...|+|..
T Consensus 257 ~I~~pV~V~~~l~r~d-~~~Sep~~FtY~P 285 (286)
T 1p7h_L 257 HIRTPVKVNFYVINGK-RKRSQPQHFTYHP 285 (286)
T ss_dssp TCSSCEEEEEEEEETT-TEECCCEEEEEEC
T ss_pred ccCCCeEEEEEEeCCC-CCcCCCcCceEec
Confidence 445556665552 3579999999964
No 167
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3
Probab=28.71 E-value=87 Score=31.60 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=56.7
Q ss_pred CCceeeEEecCCCccCCCCeEEEEEccCcCccccC----CCcceEEE--cCCchhhHHHhhccceeeecCCCC-----CC
Q 005011 164 EHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHL----SKSNMFCV--CGEVRVPAEFVQAGVYRCFLPPHS-----PG 232 (719)
Q Consensus 164 ~~l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~----~~~~~ac~--fG~~ev~~~li~~Gvl~c~~p~~~-----~G 232 (719)
.+-..|.+.|=.-+++.||-+|.|+|..+.- ++. ..-.|-+. |...+ +-....++|.+||-. |=
T Consensus 176 ~~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K-~di~VrF~e~~We~~~~f~~~D----vh~Q~AIvf~TPpY~~~I~~pV 250 (275)
T 1gji_A 176 TAELRICRVNKNCGSVKGGDEIFILCDKVQK-DDIEVRFVLDNWEAKGSFSQAD----VHRQVAIVFRTPPFLRDITEPI 250 (275)
T ss_dssp TSCCCEEEESCSEEETTCCCEEEEEESCCCG-GGCEEEEEETTEEEECBCCGGG----EETTTEEEEECCCCSSCCSSCE
T ss_pred CCCCEEEEeeCCccccCCCCEEEEEeccccc-CCCEEEEEccceeeccccChhh----hcceeeEEEeCCCCCcCCCCCE
Confidence 3556899999999999999999999976531 111 01135443 33333 334567889999874 33
Q ss_pred cceEEEEeCCCCccchhhccccCC
Q 005011 233 LFLLYMSLDGHKPISQVLNFEYRS 256 (719)
Q Consensus 233 ~v~l~v~~~g~~~ls~~~~f~y~~ 256 (719)
.|.+++-......+|+...|+|..
T Consensus 251 ~V~iqL~r~sd~~~Sep~~FtY~P 274 (275)
T 1gji_A 251 TVKMQLRRPSDQEVSEPMDFRYLP 274 (275)
T ss_dssp EEEEEEEEGGGTEECCCEEEEEEC
T ss_pred EEEEEEEcCCCCCccCCcCcEEcC
Confidence 344555442223579999999864
No 168
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=27.91 E-value=65 Score=33.84 Aligned_cols=89 Identities=10% Similarity=0.050 Sum_probs=56.5
Q ss_pred ceeeEEecCCCccCCCCeEEEEEccCcCccccC-------CCc--ceEEEcCCchhhHHHhhccceeeecCCCC------
Q 005011 166 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHL-------SKS--NMFCVCGEVRVPAEFVQAGVYRCFLPPHS------ 230 (719)
Q Consensus 166 l~~I~d~sP~w~~~~gg~kVlI~G~~~~~~~~~-------~~~--~~ac~fG~~ev~~~li~~Gvl~c~~p~~~------ 230 (719)
-..|.++|-.-+++.||-+|.|+|..+.- ++. ... .|-+ ||+.. +..+-....++|.+||-.
T Consensus 249 eL~I~R~s~~sgsv~GG~Ev~LLc~Kv~K-~DikVrF~E~~~~g~~WE~-~g~f~-~~DVH~Q~AIvfkTPpY~~~~I~~ 325 (365)
T 1svc_P 249 NLKIVRMDRTAGCVTGGEEIYLLCDKVQK-DDIQIRFYEEEENGGVWEG-FGDFS-PTDVHRQFAIVFKTPKYKDINITK 325 (365)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESSCCG-GGCEEEEEEEETTTEEEEE-ECBCC-GGGEETTTEEEEECCCCSCSCCSS
T ss_pred CCeEEEecCCccccCCCCEEEEEeccccc-CCCEEEEEEeCCCCCeeEE-eeeeC-hHHhcceeeEEEECCCCCCCCcCC
Confidence 45899999999999999999999976531 111 011 2433 22221 122234567889999874
Q ss_pred CCcceEEEEeCCCCccchhhccccCCc
Q 005011 231 PGLFLLYMSLDGHKPISQVLNFEYRSP 257 (719)
Q Consensus 231 ~G~v~l~v~~~g~~~ls~~~~f~y~~~ 257 (719)
|=.|.+++.......+|+...|+|...
T Consensus 326 pV~V~iqL~R~sd~~~Sep~~FtY~P~ 352 (365)
T 1svc_P 326 PASVFVQLRRKSDLETSEPKPFLYYPE 352 (365)
T ss_dssp CEEEEEEEECTTTCCBCCCEEEEEECC
T ss_pred CeEEEEEEEcCCCCCccCCccceeecC
Confidence 334555554432335799999999863
No 169
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=27.47 E-value=5.4e+02 Score=30.88 Aligned_cols=34 Identities=6% Similarity=0.035 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005011 574 RIQHRFRSWKVRKEFLNMRRQAIKIQAAFRGFQV 607 (719)
Q Consensus 574 ~IQs~~Rg~~~Rk~~~~~r~aai~IQa~~Rg~~~ 607 (719)
.++.|+|+..++...+.....+..||+.++++..
T Consensus 777 ~L~~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f~~ 810 (1010)
T 1g8x_A 777 ELVQWINDKQASLESRDFGDSIESVQSFMNAHKE 810 (1010)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 4556666666655444444467889988887643
No 170
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=21.72 E-value=55 Score=20.06 Aligned_cols=14 Identities=36% Similarity=0.365 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 005011 571 AAARIQHRFRSWKV 584 (719)
Q Consensus 571 aai~IQs~~Rg~~~ 584 (719)
|+..||..||.++.
T Consensus 8 A~llI~d~~r~~k~ 21 (23)
T 3dvk_B 8 AAMMIMDYYKQSKV 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34444444444443
Done!