Query 005012
Match_columns 719
No_of_seqs 160 out of 207
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 16:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2604 Subunit of cis-Golgi t 100.0 3E-142 6E-147 1179.0 59.8 682 12-716 3-696 (733)
2 PF04136 Sec34: Sec34-like fam 100.0 4.7E-43 1E-47 340.2 19.1 155 112-266 1-155 (157)
3 PF06419 COG6: Conserved oligo 98.7 0.0023 4.9E-08 75.8 52.1 404 110-580 30-479 (618)
4 KOG3758 Uncharacterized conser 97.4 0.42 9E-06 55.5 37.0 395 112-582 65-513 (655)
5 KOG2604 Subunit of cis-Golgi t 96.7 0.0052 1.1E-07 71.2 8.6 150 115-265 543-697 (733)
6 PF09763 Sec3_C: Exocyst compl 96.1 4.7 0.0001 48.8 47.4 144 115-265 34-187 (701)
7 PF04129 Vps52: Vps52 / Sac2 f 96.1 4.2 9.1E-05 47.4 42.5 340 116-469 15-397 (508)
8 KOG1961 Vacuolar sorting prote 90.7 41 0.00089 39.6 32.5 137 115-260 75-218 (683)
9 PF06008 Laminin_I: Laminin Do 83.9 63 0.0014 34.2 19.9 108 115-229 35-145 (264)
10 KOG0810 SNARE protein Syntaxin 82.4 78 0.0017 34.5 17.3 180 126-327 41-224 (297)
11 PF13949 ALIX_LYPXL_bnd: ALIX 74.6 33 0.00072 36.6 11.7 104 91-198 176-283 (296)
12 cd08915 V_Alix_like Protein-in 71.9 44 0.00095 36.8 12.1 104 91-198 226-333 (342)
13 COG3883 Uncharacterized protei 70.4 67 0.0014 34.4 12.4 102 106-217 33-138 (265)
14 PF04012 PspA_IM30: PspA/IM30 63.9 1.1E+02 0.0025 31.2 12.6 114 91-218 64-177 (221)
15 PF04899 MbeD_MobD: MbeD/MobD 63.5 89 0.0019 26.8 9.5 67 99-165 2-68 (70)
16 KOG1490 GTP-binding protein CR 60.1 38 0.00083 39.3 8.7 107 113-220 79-196 (620)
17 cd09234 V_HD-PTP_like Protein- 59.4 95 0.002 34.3 11.6 93 103-198 236-328 (337)
18 cd09237 V_ScBro1_like Protein- 57.5 71 0.0015 35.5 10.3 97 102-198 248-347 (356)
19 PF04048 Sec8_exocyst: Sec8 ex 54.1 2.1E+02 0.0045 27.5 12.7 50 91-144 42-91 (142)
20 PF00435 Spectrin: Spectrin re 53.9 1.4E+02 0.003 25.4 11.1 75 90-167 9-87 (105)
21 PF07393 Sec10: Exocyst comple 53.6 4.9E+02 0.011 31.7 18.6 51 135-185 2-52 (710)
22 cd09238 V_Alix_like_1 Protein- 51.6 1E+02 0.0022 34.1 10.3 88 106-197 242-329 (339)
23 PF06248 Zw10: Centromere/kine 49.8 5.1E+02 0.011 30.8 18.3 139 91-234 9-152 (593)
24 PF10191 COG7: Golgi complex c 49.4 6E+02 0.013 31.5 36.3 170 207-423 148-324 (766)
25 PF11554 DUF3232: Protein of u 49.0 74 0.0016 30.9 7.4 87 217-322 7-99 (152)
26 PF10168 Nup88: Nuclear pore c 49.0 2.3E+02 0.005 34.8 13.5 83 126-219 566-648 (717)
27 PF04108 APG17: Autophagy prot 48.1 4.7E+02 0.01 29.8 22.7 93 161-253 193-303 (412)
28 KOG0804 Cytoplasmic Zn-finger 47.5 1.9E+02 0.004 33.3 11.3 73 111-183 339-412 (493)
29 KOG2196 Nuclear porin [Nuclear 46.8 2.6E+02 0.0056 29.7 11.5 78 95-184 81-158 (254)
30 cd09236 V_AnPalA_UmRIM20_like 46.8 1.6E+02 0.0035 32.7 11.0 91 103-197 253-343 (353)
31 PF06103 DUF948: Bacterial pro 44.6 2E+02 0.0043 25.2 9.2 35 150-184 51-85 (90)
32 PF01031 Dynamin_M: Dynamin ce 44.1 4.3E+02 0.0093 28.3 17.2 59 211-270 33-91 (295)
33 PRK09039 hypothetical protein; 43.5 5E+02 0.011 28.8 14.7 133 107-246 45-185 (343)
34 PF08580 KAR9: Yeast cortical 42.8 1.5E+02 0.0032 36.1 10.5 102 86-222 33-146 (683)
35 PF11172 DUF2959: Protein of u 41.1 4.2E+02 0.0092 27.3 13.1 79 116-200 26-112 (201)
36 smart00150 SPEC Spectrin repea 40.2 2.3E+02 0.0049 23.9 10.7 91 90-183 6-100 (101)
37 PF06148 COG2: COG (conserved 39.7 42 0.00091 31.8 4.4 105 85-193 25-130 (133)
38 smart00503 SynN Syntaxin N-ter 37.3 2.2E+02 0.0048 25.6 8.6 57 126-182 9-65 (117)
39 COG1084 Predicted GTPase [Gene 37.0 2.5E+02 0.0053 31.3 10.0 102 112-214 78-190 (346)
40 PF07303 Occludin_ELL: Occludi 36.9 2.4E+02 0.0053 25.7 8.6 62 110-172 7-68 (101)
41 PHA03386 P10 fibrous body prot 35.8 1.7E+02 0.0038 26.4 7.1 54 127-184 7-60 (94)
42 PF08385 DHC_N1: Dynein heavy 33.7 8.2E+02 0.018 28.5 30.8 55 170-228 86-140 (579)
43 cd09235 V_Alix Middle V-domain 33.4 3.5E+02 0.0075 29.9 10.9 83 112-198 248-330 (339)
44 KOG1962 B-cell receptor-associ 32.2 1.8E+02 0.0038 30.4 7.7 58 120-177 153-210 (216)
45 PF00015 MCPsignal: Methyl-acc 31.2 3.1E+02 0.0068 27.1 9.4 14 91-104 95-108 (213)
46 PF14932 HAUS-augmin3: HAUS au 31.1 3.8E+02 0.0082 28.4 10.3 155 89-248 6-187 (256)
47 PF05600 DUF773: Protein of un 30.7 4.7E+02 0.01 30.8 11.8 78 89-166 397-494 (507)
48 cd00179 SynN Syntaxin N-termin 29.7 4.8E+02 0.01 24.6 13.0 46 169-214 87-141 (151)
49 PF04108 APG17: Autophagy prot 29.6 8.8E+02 0.019 27.6 21.0 105 92-196 213-323 (412)
50 PF14932 HAUS-augmin3: HAUS au 29.4 5.8E+02 0.013 27.0 11.4 53 171-225 136-188 (256)
51 PLN03094 Substrate binding sub 29.3 8.7E+02 0.019 27.4 13.9 126 92-220 230-367 (370)
52 cd07666 BAR_SNX7 The Bin/Amphi 27.8 7E+02 0.015 26.5 11.4 83 112-194 58-156 (243)
53 PF15290 Syntaphilin: Golgi-lo 27.8 5.6E+02 0.012 27.8 10.5 85 114-198 71-163 (305)
54 PF01865 PhoU_div: Protein of 27.6 6.4E+02 0.014 25.4 12.3 55 161-224 41-96 (214)
55 PF06005 DUF904: Protein of un 27.4 4E+02 0.0087 22.9 9.1 58 125-182 4-61 (72)
56 PF05700 BCAS2: Breast carcino 26.6 7.3E+02 0.016 25.7 11.7 73 111-183 132-219 (221)
57 PRK15352 type III secretion sy 26.5 4E+02 0.0087 24.1 7.8 51 125-175 67-117 (125)
58 PF12128 DUF3584: Protein of u 26.2 1.2E+03 0.026 30.4 15.5 112 113-229 846-980 (1201)
59 PF13874 Nup54: Nucleoporin co 25.8 4.8E+02 0.01 25.0 9.1 53 148-200 74-127 (141)
60 cd07624 BAR_SNX7_30 The Bin/Am 25.4 7.2E+02 0.016 25.2 11.5 20 113-132 19-38 (200)
61 cd08816 CARD_RIG-I_1 Caspase a 25.0 1.5E+02 0.0032 26.5 4.8 66 387-459 5-70 (89)
62 PF04136 Sec34: Sec34-like fam 24.9 6.7E+02 0.014 24.6 10.2 44 123-166 5-48 (157)
63 PF10372 YojJ: Bacterial membr 24.9 2.3E+02 0.005 24.3 5.8 50 113-162 15-65 (70)
64 PF00957 Synaptobrevin: Synapt 23.6 4.9E+02 0.011 22.6 8.7 52 115-166 7-58 (89)
65 PF09325 Vps5: Vps5 C terminal 23.6 7.8E+02 0.017 24.9 11.9 93 88-180 91-183 (236)
66 KOG1949 Uncharacterized conser 23.1 9.3E+02 0.02 29.7 12.1 88 315-418 147-248 (1005)
67 PF10146 zf-C4H2: Zinc finger- 23.1 8.9E+02 0.019 25.4 11.2 36 131-166 59-94 (230)
68 PRK04778 septation ring format 23.0 6.4E+02 0.014 29.9 11.3 114 92-231 425-538 (569)
69 PF06120 Phage_HK97_TLTM: Tail 22.6 1E+03 0.023 26.1 12.3 40 84-125 26-65 (301)
70 PRK10807 paraquat-inducible pr 22.4 6.6E+02 0.014 29.8 11.1 21 207-227 508-528 (547)
71 TIGR02680 conserved hypothetic 22.1 1.8E+03 0.04 29.3 16.1 65 87-151 245-309 (1353)
72 PF03920 TLE_N: Groucho/TLE N- 21.7 92 0.002 29.9 3.1 36 138-173 22-57 (135)
73 KOG1333 Uncharacterized conser 21.5 6.9E+02 0.015 26.0 9.4 36 504-539 149-185 (241)
74 PHA03332 membrane glycoprotein 21.3 3.1E+02 0.0067 34.9 8.0 69 173-241 972-1051(1328)
75 PF06419 COG6: Conserved oligo 21.0 9.3E+02 0.02 29.0 12.2 96 84-194 26-136 (618)
76 PF04111 APG6: Autophagy prote 21.0 3.4E+02 0.0075 29.7 7.9 79 99-181 12-92 (314)
77 KOG3976 Mitochondrial F1F0-ATP 20.8 1E+03 0.022 25.3 10.9 47 148-198 165-211 (247)
78 PF00261 Tropomyosin: Tropomyo 20.8 9.6E+02 0.021 24.9 11.2 74 109-182 111-184 (237)
79 PF11932 DUF3450: Protein of u 20.7 9.8E+02 0.021 25.0 14.6 7 225-231 142-148 (251)
80 TIGR01834 PHA_synth_III_E poly 20.6 6.2E+02 0.013 28.0 9.6 47 85-131 224-276 (320)
81 PF10408 Ufd2P_core: Ubiquitin 20.3 1E+03 0.022 28.6 12.4 100 314-423 222-333 (629)
82 PF02183 HALZ: Homeobox associ 20.2 3.6E+02 0.0078 21.1 5.6 39 145-183 4-42 (45)
No 1
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-142 Score=1178.99 Aligned_cols=682 Identities=41% Similarity=0.664 Sum_probs=620.4
Q ss_pred CCCcccccccchHhhhhhhCCCCHHHHHHHHHHHHhhccCCCCccccccCCCCCCCCCcccccCCCCCCCcchhhhhcCh
Q 005012 12 PKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNT 91 (719)
Q Consensus 12 ~~~~~~~~~~~~~~~We~~apLs~~q~~~i~~l~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (719)
+..+|.++.+.....|+..|||+|.|+..+..+.++..++|-|+.++.++.+.+... |-.+ +..++.++
T Consensus 3 ~~~~ar~~~~~~~~~~~~~a~l~e~q~~~~l~~~~~~~~~~~p~~l~~e~~~s~~~~------d~~l-----~~~~~~~~ 71 (733)
T KOG2604|consen 3 DQREARSRLNYWDRETDNDAPLPEQQTLENLELVHALSKEPRPSLLPIENSSSLTSQ------DISL-----GEENLTNT 71 (733)
T ss_pred chhHHHHHhhhhhcccccCCCCcHHHHHHHHHHHHHHHhCCCcccccccccccCCCC------CccC-----Ccccccch
Confidence 445677777878888888999999999999999999999999999988754321111 2222 24678999
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005012 92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR 171 (719)
Q Consensus 92 ~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~ 171 (719)
.+|+.||+++...|...++.+|+.|+++|....++|+.+|+|++++++.|++|..+|++|+.||++||++||+|+.||.+
T Consensus 72 ~~f~~wf~~~~~~~~~~~~~~y~~y~d~l~~~~~~c~~il~q~~~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~k 151 (733)
T KOG2604|consen 72 NQFLSWFTDLMNPIKQISRPKYRIYLDQLKKRIEECDAILDQTNNALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSK 151 (733)
T ss_pred hhhhHHHHhhhhHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHH
Q 005012 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRS 251 (719)
Q Consensus 172 L~~lae~I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~ 251 (719)
|.++||.|+.+|+||++||+++|+||+|+.+|++.+|.+||.+||+||.|+++||+|||++.|+.||||||+|||+|||+
T Consensus 152 l~elae~I~k~L~yF~~le~l~~~l~~pt~~v~~~sF~~~l~~ld~ci~~l~en~~fkd~~~Y~~k~kqcL~kA~~lik~ 231 (733)
T KOG2604|consen 152 LSELAEGIRKKLHYFAELEELNRRLNHPTLSVGKVSFKEMLAKLDECIMFLEENPDFKDAPAYLGKYKQCLSKALGLIKT 231 (733)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhh
Q 005012 252 HVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLS 331 (719)
Q Consensus 252 ~~~~~L~~~~~~V~~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~ 331 (719)
|++|+|++++++|.++-++ .....++.++++|+||.++|+++|+++++||+|+..+||.++|.+||+.||++|.+
T Consensus 232 y~~~vlkq~t~q~l~~~~~-----~~~~~~~~~sl~Y~kf~aaa~~~k~~i~eie~rs~~~e~~qlL~~~~~~Y~~qRl~ 306 (733)
T KOG2604|consen 232 YFTNVLKQTTSQVLKRSKN-----MNPHADLAFSLFYVKFSAAAHKLKPVIEEIEKRSEKEEYDQILAECHQHYFQQRLR 306 (733)
T ss_pred HHHHHHHHHHHHHhccCCC-----CCCccchhhhhhhhHHHHHHhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998766221 12233677899999999999999999999999998899999999999999999999
Q ss_pred hhhHHHHHHHHhHhccCCchhhHHhHHHHHHHHHHHHHHhhchhCCCCccChhchhhhHHHHHHHHHHhhcccccccCCH
Q 005012 332 LVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNV 411 (719)
Q Consensus 332 LL~p~i~~~l~e~~~~~~l~~l~r~~~~~l~~~C~dE~~Lf~~FF~~~~~~~~~l~~~le~Lc~~LYD~lRp~Ii~e~~L 411 (719)
|++|+|+.+|.+++..+++|+++|+||+||+++|.||++||.+||+.+ ...++.|+++||.++||..||+|+|+.|+
T Consensus 307 ll~pvi~~~i~~~~~~~~~~s~~rsg~afl~~~c~dE~kLf~Eff~~~---~f~~~~~~~~lc~~lyd~~r~~ilh~~~l 383 (733)
T KOG2604|consen 307 LLKPVIDYHIKEFFVKKDLCSLIRSGCAYLQQTCADENKLFREFFIMG---DFKLMHYLENLCQSLYDNSRPLILHEKHL 383 (733)
T ss_pred ccCcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHHHHHHhhcCCC---chHHHHHHHHhchHhhcchhhHHHHHHHH
Confidence 999999999999998889999999999999999999999999999987 35799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccCCCCchhhhhccCCCC
Q 005012 412 DLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKL 491 (719)
Q Consensus 412 ~~Lcel~~iL~~e~lee~~~~~~~~~~~~~~~~~~lLqDvQeRLiFRaq~yi~~~I~~Y~P~~~DL~yP~kL~~~~~~~~ 491 (719)
++||+.|++++.++++++.+ ....+++..++||++|+||||+||+|+||+++|.+|+|++|||+||+|+++......
T Consensus 384 ~tL~e~~si~~~~~le~~~~---~~~~~~~~~~~~il~dvqeRL~fr~~~yiq~dI~~y~Pt~~dL~~~~k~~~~~~~~~ 460 (733)
T KOG2604|consen 384 ETLCEVCSILQSEQLEEHVQ---ERLDAFAEFLNPILQDVQERLVFRVQTYIQTDIQNYSPTEEDLAYPAKLEMSEFILQ 460 (733)
T ss_pred HHHHHHHHhhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcCCCChhhccchHHHHhhHHHHh
Confidence 99999999999999988765 333478999999999999999999999999999999999999999999998532111
Q ss_pred CC---CC------CCCCccccccCCchHHHHHHHHHhhhhccChhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 005012 492 ET---TP------ADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQL 562 (719)
Q Consensus 492 ~~---~~------~~~~~~~~~~wYPpl~ktL~lLSkLy~~v~~~VF~~LA~eaV~~Ci~SL~~As~~I~~~~~~~D~~L 562 (719)
+. ++ .........+| |||+|||.||||||||||+.||+|+||+++|.||+||.+|++.|+++++++||+|
T Consensus 461 ~l~~~D~e~~~~~~~~~~~~~~s~-p~v~kTL~~LSklYrcids~vf~~lA~~~~~~CI~Sl~~A~~~i~knk~~lDa~L 539 (733)
T KOG2604|consen 461 SLRLSDEEKLDSDVPQKSAMTESW-PPVRKTLVCLSKLYRCIDSPVFDGLAQEALEDCIQSLSGAYKDISKNKTKLDAEL 539 (733)
T ss_pred hccCCchhhhcchhhhhhccccCC-chHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHhHHHHhhhccccccchh
Confidence 00 00 01112334567 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhhhccCcccccccccccccchhHHHHHHHHHccCCccccccchhhhhh---hccchhhhhhhhhHHHHHHH
Q 005012 563 FLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLAR---TLSPRVLESQIDAKKELEKS 639 (719)
Q Consensus 563 FlIKhLLiLReQI~~Fdi~f~~~e~~lDFs~~~~~~~~ll~~~~~lf~~ss~~~l~~---~l~P~v~e~~~Dsk~eld~~ 639 (719)
|+|||||||||||+||+|+|+++|+++|||++++++++++.+...+|+.+++|++++ .++|+|+++++|+|+|||.+
T Consensus 540 fliKhLLiLReQiapFriq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~q 619 (733)
T KOG2604|consen 540 FLIKHLLILREQIAPFRIQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQ 619 (733)
T ss_pred hHHHHHHHHHHhccccceeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999888999999988665 55999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhcCCCCcccccccccccccCCCCCHHHHHHHHHHHHHHHHhhh
Q 005012 640 LKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVCHVIKCLF 716 (719)
Q Consensus 640 Lk~~ce~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~fA~p~~i~~~~~~~~~~~~~~~ 716 (719)
||.+|+.||+.++.++++|+.+|+.++.+.+.....+.++-+......+.+.+++||+|..|..++++++..++...
T Consensus 620 Lr~a~~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~~~~V~~lv~~v~~~~~~~~ 696 (733)
T KOG2604|consen 620 LRSACEKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAAPTKVTVLVEAVQELIKNKL 696 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999887765555554444455677999999999999999999999998654
No 2
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=100.00 E-value=4.7e-43 Score=340.22 Aligned_cols=155 Identities=43% Similarity=0.748 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 005012 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (719)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~ 191 (719)
+|+.|.++|..+.++|+.++++++++++.|++|..+|..|+++|++||++|++|+.||++|++++++|+++|+||++||+
T Consensus 1 ~y~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 80 (157)
T PF04136_consen 1 KYRQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDP 80 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 192 IAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQA 266 (719)
Q Consensus 192 itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~~ 266 (719)
|+|+||+|+.+|.+++|.+||.+||+||+||++||+|||+++|++||+|||+|||+|||+||++.||.++++|.+
T Consensus 81 itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~~~~l~~~~~~vl~ 155 (157)
T PF04136_consen 81 ITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKNYVVNTLRSATNQVLK 155 (157)
T ss_pred HHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=98.69 E-value=0.0023 Score=75.80 Aligned_cols=404 Identities=15% Similarity=0.208 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 005012 110 EEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDEL 189 (719)
Q Consensus 110 ~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~L 189 (719)
-.....+++.+..-.++.+.+-.+++..-..-++|...-.....+|..+-+..+.|-.+++.++...+-+..-+..|.-=
T Consensus 30 l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls 109 (618)
T PF06419_consen 30 LKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLS 109 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445666666666666777777777777777777777777788899999999999999999999999999999998754
Q ss_pred HHHHHhhCCCCCccCCccHHHHHHHHH----HHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 190 ENIAASFYSPNMNVGNGNFFHLLKRLD----ECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQ 265 (719)
Q Consensus 190 e~itr~L~sp~~~V~~~~F~~~L~~LD----~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~ 265 (719)
+.=..-|.+... .-++.|...|.|.. +|-.=| .-++.+=+-..+.+--+.+.+|..-|-.++...++....+
T Consensus 110 ~~E~~~L~~~~~-~v~~~FF~~L~r~~~I~~~c~~LL-~~~~~~ag~~iM~~~~~~~e~a~erl~~w~q~e~~~l~~~-- 185 (618)
T PF06419_consen 110 EEEEDALTSGEE-PVDDEFFDALDRVQKIHEDCKILL-STENQRAGLEIMEQMSKYLERAYERLYRWVQRECRSLNLD-- 185 (618)
T ss_pred HHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--
Confidence 444455655422 34788999888874 465444 4446666666667777777777777777776655554110
Q ss_pred HHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHh
Q 005012 266 AAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFS 345 (719)
Q Consensus 266 ~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~e~~ 345 (719)
.+.. .+.++.-+..|..| |+ +.+.|.+.|.+.|.+.|..-.-..++.-.
T Consensus 186 ---------~~~~----------------~~~l~~al~~L~~r---p~---lf~~~l~~~~~~R~~~l~~~F~~aLt~g~ 234 (618)
T PF06419_consen 186 ---------NPEV----------------SPLLRRALRYLRER---PV---LFNYCLDEFAEARSKALLRRFLDALTRGG 234 (618)
T ss_pred ---------Cccc----------------chHHHHHHHHHhcC---hH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0001 22344444445444 44 46789999999999988775555554322
Q ss_pred c-----------cCCchhhHHhHHHHHHHHHHHHHHhhchhCCCCccC-------------------hhchhhhHHHHHH
Q 005012 346 K-----------KETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSED-------------------ISSLAPLIDPLST 395 (719)
Q Consensus 346 ~-----------~~~l~~l~r~~~~~l~~~C~dE~~Lf~~FF~~~~~~-------------------~~~l~~~le~Lc~ 395 (719)
. ++|-..++-.-.+|+-+..-.|.++....|...+.. ..-++.-++++|.
T Consensus 235 ~~~~~~rPIel~AhDP~RYvGDmLAwvHq~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~~l~r 314 (618)
T PF06419_consen 235 PGGSPSRPIELHAHDPLRYVGDMLAWVHQAIASEREFLESLFKFDEDEIAEGSSSGFDSNPWSEELINELLDRILEGLCR 314 (618)
T ss_pred CCCCCCCchhhhccChHHHHHHHHHHHHHHhhhHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHhH
Confidence 1 146778999999999999999999999999754311 1124556788888
Q ss_pred HHHHhhcccccccCCHHHHHHHHHHHHHH--HhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--C
Q 005012 396 FLYDILRPKLIHETNVDLLCELVDILKVE--VLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANY--I 471 (719)
Q Consensus 396 ~LYD~lRp~Ii~e~~L~~Lcel~~iL~~e--~lee~~~~~~~~~~~~~~~~~~lLqDvQeRLiFRaq~yi~~~I~~Y--~ 471 (719)
||=-.+-.-|-.+.+.-++-+++.+|+=| |+...++... .+-..+..+..-++.++.--.+.+++ .|.++ .
T Consensus 315 plk~RvEQvi~se~~~i~~yki~~LL~fY~~~~~k~i~~~s----~L~~tl~~L~~~a~~~f~~~l~~~~~-~l~~~~~~ 389 (618)
T PF06419_consen 315 PLKIRVEQVISSEEDPITLYKIANLLSFYQMTFSKLIGEDS----SLIETLKELQDLAQKKFFSSLRDHVA-KLLRSAPE 389 (618)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCC
Confidence 88877777777899999999999999974 5555543221 35555666666777666666666664 34444 5
Q ss_pred CCccCCCCchhhhhccCCCCCCCCCCCCccccccCCchHHHHHHHHHhhhhccChhhhh-------HHHHHHHHHHHHHH
Q 005012 472 PSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFT-------GLAQEAVEVCSESI 544 (719)
Q Consensus 472 P~~~DL~yP~kL~~~~~~~~~~~~~~~~~~~~~~wYPpl~ktL~lLSkLy~~v~~~VF~-------~LA~eaV~~Ci~SL 544 (719)
|.+.||.-|+-+ ..++..|.-|...-+.++.. .--..+|..++.-+
T Consensus 390 ~~~~DL~PP~~l---------------------------~d~l~~L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~idpl 442 (618)
T PF06419_consen 390 PPPADLSPPEWL---------------------------IDFLSLLREILDVYDSSLSPDDDRENDNDFKPILDEPIDPL 442 (618)
T ss_pred CCCCCCCCCHHH---------------------------HHHHHHHHHHHHHhhcccCCccchhhhhHHHHHHHHHhHHH
Confidence 556777766544 34444444444333222220 12234445555555
Q ss_pred HHHHHHHHhcCCCCcc-hhHHHHhHHHHhhhccCccc
Q 005012 545 QKASKLIAKRSTPMDG-QLFLIKYLLILREQIAPFDI 580 (719)
Q Consensus 545 ~~As~~I~~~~~~~D~-~LFlIKhLLiLReQI~~Fdi 580 (719)
.......+..-.+-|. ..|+|--|..++.-|.||+.
T Consensus 443 l~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L~~~~~ 479 (618)
T PF06419_consen 443 LQMCQKSASPLAPKDDRAIFMINCLDLIQSTLSPFEF 479 (618)
T ss_pred HHHHHHHhhccCChhhhHHHHHHhHHHHHHHccChHh
Confidence 5544444444466666 89999999999999999854
No 4
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.42 Score=55.47 Aligned_cols=395 Identities=15% Similarity=0.204 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 005012 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (719)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~ 191 (719)
.-..|+..++.-....+.+-.+++..-...++|..++..+..+|+.+-..-+++=.|..+++.-.+.|...|.-|.--..
T Consensus 65 iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~ 144 (655)
T KOG3758|consen 65 INEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSE 144 (655)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChH
Confidence 33467777777777888888888888888888999999999999999999999999999999999999999998865544
Q ss_pred HHHhhCCCCCccCCccHHHHHHHHH---HHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 005012 192 IAASFYSPNMNVGNGNFFHLLKRLD---ECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLS-VLKSASSQVQAA 267 (719)
Q Consensus 192 itr~L~sp~~~V~~~~F~~~L~~LD---~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~-~L~~~~~~V~~~ 267 (719)
=.+-|.+.|- -++.|...|++.- +.-.+|-+-|++.-+.--..+-...+-+|..-|-.+..+ .+++.
T Consensus 145 E~~~L~~~g~--i~e~FF~vL~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~~E~a~erl~r~~qs~e~~~l------- 215 (655)
T KOG3758|consen 145 ELDLLTESGP--IDEDFFKVLDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALIQEGAYERLFRWSQSSECRNL------- 215 (655)
T ss_pred HHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhcCC-------
Confidence 4445544332 2577888887653 222344444443333332333223333333222222111 11110
Q ss_pred HHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhc
Q 005012 268 IRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRS-SKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSK 346 (719)
Q Consensus 268 l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~-~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~e~~~ 346 (719)
. +++ ..+..+++..--.+- .+|. +.+.|.+.|.+.|.+-| ++.-|+.+..
T Consensus 216 -----------~-~t~-----------~~E~~~il~kA~~~L~~~p~---lfk~~ide~~~aR~~~L---~~~Fisaltr 266 (655)
T KOG3758|consen 216 -----------T-GTD-----------SQEVSPILRKAFVFLSSRPV---LFKYLIDEVGTARSQSL---LRQFISALTR 266 (655)
T ss_pred -----------c-ccc-----------chhhHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHH---HHHHHHHHcc
Confidence 0 011 012333333322222 2333 45567788888887655 3344444432
Q ss_pred c-------------CCchhhHHhHHHHHHHHHHHHHHhhchhCCCCc-------------------cChhchhhhHHHHH
Q 005012 347 K-------------ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSS-------------------EDISSLAPLIDPLS 394 (719)
Q Consensus 347 ~-------------~~l~~l~r~~~~~l~~~C~dE~~Lf~~FF~~~~-------------------~~~~~l~~~le~Lc 394 (719)
+ +|-..++-.-.+|+-|.-..|.+++...|.... .|..-++..++++|
T Consensus 267 g~~~~~PrpIel~ahDPlRyIGDmLawlHq~ia~Ekelv~aLfd~~~~d~q~n~~~~en~~~vl~~~dn~lld~i~~gvc 346 (655)
T KOG3758|consen 267 GGPGGMPRPIELHAHDPLRYIGDMLAWLHQAIANEKELVEALFDFKKEDLQDNISISENLPNVLGGIDNKLLDDILEGVC 346 (655)
T ss_pred CCCCCCCCCccccCCChHHHHHHHHHHHHHHhhhHHHHHHHHhcchhhhhccCCCchhHhHHHHhchhhhHHHHHHHHhc
Confidence 1 356678999999999999999999999992110 11122446677777
Q ss_pred HHHHHhhcccccccCCHHHHHHHHHHHHH--HHhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-C
Q 005012 395 TFLYDILRPKLIHETNVDLLCELVDILKV--EVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANY-I 471 (719)
Q Consensus 395 ~~LYD~lRp~Ii~e~~L~~Lcel~~iL~~--e~lee~~~~~~~~~~~~~~~~~~lLqDvQeRLiFRaq~yi~~~I~~Y-~ 471 (719)
.||==.+-..+.-+.+.-.|-++..+|+= ++++.-++... .+-..+..|-.-.+.|.+=--..++. .+.++ .
T Consensus 347 rPlkvRvEqil~~e~~~Iilfki~nlL~FY~~~fs~~v~~ds----~l~~~l~~L~d~s~q~~~~~l~~~~~-~l~~~~l 421 (655)
T KOG3758|consen 347 RPLKVRVEQILQAEKNAIILFKISNLLKFYRVTFSKLVQDDS----ALLNTLKELEDISKQRFIGYLEDHVK-KLMRKEL 421 (655)
T ss_pred chhHHHHHHHHHcCcCceeehhHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcC
Confidence 77776666666778999999999999986 45654443221 23333333333333444333333443 33344 2
Q ss_pred CCccCCCCchhhhhccCCCCCCCCCCCCccccccCCchHHHHHHHHHhhhh---cc----------ChhhhhHHHHHHHH
Q 005012 472 PSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQ---CL----------EQAVFTGLAQEAVE 538 (719)
Q Consensus 472 P~~~DL~yP~kL~~~~~~~~~~~~~~~~~~~~~~wYPpl~ktL~lLSkLy~---~v----------~~~VF~~LA~eaV~ 538 (719)
|.|.||-.|. .|+..|.+|--|+. .+ ...+|.-+-.-++.
T Consensus 422 ~p~~DLlPpp---------------------------~v~~~l~ll~ei~~~~~a~~~~~d~~~~df~~l~s~vldpilq 474 (655)
T KOG3758|consen 422 SPPSDLLPPP---------------------------AVREYLNLLVEIFEIYEASHTAEDGEQLDFKLLLSCVLDPILQ 474 (655)
T ss_pred CCccccCCCH---------------------------HHHHHHHHHHHHHHHhhhhhccccccccchHHHHHHHHHHHHH
Confidence 3333666442 35555555544443 11 13445555566677
Q ss_pred HHHHHHHHHHHHHHhcCCCCcc-hhHHHHhHHHHhhhccCccccc
Q 005012 539 VCSESIQKASKLIAKRSTPMDG-QLFLIKYLLILREQIAPFDIEF 582 (719)
Q Consensus 539 ~Ci~SL~~As~~I~~~~~~~D~-~LFlIKhLLiLReQI~~Fdi~f 582 (719)
.|..+-.. . .+++--| ..|+|--|=..|.-+++|+.=+
T Consensus 475 ~c~~sae~---~---lp~~d~~~~if~iNcL~~iks~l~~~e~~~ 513 (655)
T KOG3758|consen 475 MCQKSAEA---H---LPTSDKGSLIFMINCLDLIKSRLARYEFLD 513 (655)
T ss_pred HHHHHHHh---c---CCCcccccceehhhhHHHHHhHHHHHHHHH
Confidence 77665411 1 1112222 4889998999999999988643
No 5
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.0052 Score=71.20 Aligned_cols=150 Identities=17% Similarity=0.077 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 005012 115 HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKT-----KTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDEL 189 (719)
Q Consensus 115 ~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT-----~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~L 189 (719)
.++=-|+..++-++ |.-.++++--.|+.+.+.+..|..++ .+.+.+|-+|+.|+.-...-.+-+..+.-++..=
T Consensus 543 KhLLiLReQiapFr-iq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~qLr 621 (733)
T KOG2604|consen 543 KHLLILREQIAPFR-IQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQLR 621 (733)
T ss_pred HHHHHHHHhccccc-eeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHHHH
Confidence 33444444444444 44567777778999999999999999 7889999999999998887777777777777777
Q ss_pred HHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 190 ENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQ 265 (719)
Q Consensus 190 e~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~ 265 (719)
..+.+...+....|.++.+.-++.-+|+|+.+...||++|++..|...|.||..++.+.++..+-..++...+-+.
T Consensus 622 ~a~~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~~~~V~~lv~~v~~~~~~~~~ 697 (733)
T KOG2604|consen 622 SACEKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAAPTKVTVLVEAVQELIKNKLY 697 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhHHH
Confidence 7777778888888999999999999999999999999999999999999999999999999988877777665443
No 6
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=96.15 E-value=4.7 Score=48.76 Aligned_cols=144 Identities=7% Similarity=0.078 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 005012 115 HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAA 194 (719)
Q Consensus 115 ~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~itr 194 (719)
.-...|+....+||.+-..++.-...|..++++=..++++.+.|+-+....-.=.+.|+.+.+.|.= =+.-.+
T Consensus 34 ~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i-------~~~~l~ 106 (701)
T PF09763_consen 34 SLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSI-------PEEHLE 106 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCC-------CHHHHH
Confidence 3444555556666666666666666666666677777776666665554433223333333333221 111122
Q ss_pred hhCCCCCc-cC-CccHHHHHHHHHHHHHHhh-----hCCCCcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 195 SFYSPNMN-VG-NGNFFHLLKRLDECILYVE-----GNPQYAES---SVYLLKFRQLQSRALGMIRSHVLSVLKSASSQV 264 (719)
Q Consensus 195 ~L~sp~~~-V~-~~~F~~~L~~LD~ci~Fl~-----~hp~fkda---~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V 264 (719)
.|.++.+. -+ =+..-.-+..|-.||.=+. .+|++..= .-++.+|+++..+=+.-+..|+.+.++....+.
T Consensus 107 ~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~~r~~~~l~~~F~~~~~~~ 186 (701)
T PF09763_consen 107 ALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFCKRLSRFLNNMFKNLVDEL 186 (701)
T ss_pred HHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23332221 00 1223334444555554443 23444332 236677888888888888888888888776654
Q ss_pred H
Q 005012 265 Q 265 (719)
Q Consensus 265 ~ 265 (719)
.
T Consensus 187 ~ 187 (701)
T PF09763_consen 187 L 187 (701)
T ss_pred H
Confidence 4
No 7
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=96.06 E-value=4.2 Score=47.38 Aligned_cols=340 Identities=16% Similarity=0.198 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHh
Q 005012 116 YVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAAS 195 (719)
Q Consensus 116 y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~itr~ 195 (719)
-+.+|......||.+|..+++.|..+ +.+-..++...++||+++..|-..-+.-...-+.++..+.--.-=+.+.+.
T Consensus 15 ~~~~Lh~~i~~cd~~L~~le~~L~~F---q~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~ 91 (508)
T PF04129_consen 15 NFADLHNQIQECDSILESLEEMLSNF---QNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRS 91 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHh
Confidence 45566677889999999888766554 344555666666666666555433222222222222211111111122222
Q ss_pred hCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHH
Q 005012 196 FYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVY---LLKFRQLQSRALGMIRSHVLSVLKSASS-----Q-VQA 266 (719)
Q Consensus 196 L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y---~~rfkqcltRAl~LIr~~~~~~L~~~~~-----~-V~~ 266 (719)
+..+. | ++.|..-+..+..=+.+...+..++++... ..-...|..+|++=||.|+++.++.... + +++
T Consensus 92 I~~~~--v-~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q~iQ~ 168 (508)
T PF04129_consen 92 ICEGP--V-NEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQIIQQ 168 (508)
T ss_pred HhcCC--C-CHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 22211 2 335666655666666666666666665554 5677788899999999999998877532 2 222
Q ss_pred HHHhcCC-------CCCCCCc-------chhhhhhHHHHHHHHHhHHHHHHHHHhhh----Chh--HHHHH-----HHHH
Q 005012 267 AIRSSGG-------SKTSVSE-------GVEASLIYVRFKAAASELKPVLEEIESRS----SKK--EYVQI-----LEEC 321 (719)
Q Consensus 267 ~l~~~~~-------~~~~~s~-------~~~~aLlY~kF~~~a~~lk~Li~eie~R~----~~~--Ey~sl-----L~dc 321 (719)
.+-+... -.+.+.. .++--.++..|+.+...+..|-...-.+. |.+ ....+ -..-
T Consensus 169 ~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~~~Y~~~F~~Y~~~L~kl~~~~~~~~~dL~g~~~~~~~~~~s~~~~~~~ 248 (508)
T PF04129_consen 169 VLLKYKELFQFLKKHSPELAKELRQAYVETMSWYYSSYFKRYIRSLEKLQLRIIDSKDDLIGVEDSSKGGFFSSKSSLKN 248 (508)
T ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCccccccccCCCccccc
Confidence 1111000 0000000 01113445556555444333321111111 000 00000 0011
Q ss_pred HHHHHH--HHhhhhh-----HHHHHHHHhHhc-cCCchhhHHhHHHHHHHHHHHHHHhhchhCCCCc-cChhchhhhHHH
Q 005012 322 HKLYCE--QRLSLVK-----GIVQQRISEFSK-KETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSS-EDISSLAPLIDP 392 (719)
Q Consensus 322 ~~~Yf~--~R~~LL~-----p~i~~~l~e~~~-~~~l~~l~r~~~~~l~~~C~dE~~Lf~~FF~~~~-~~~~~l~~~le~ 392 (719)
...||+ .|..+|. |++-.++.+-.. +..+..+.|+-.-.|+-.|..||.--..||.... ....-|.+.+++
T Consensus 249 ~~~~Fslg~R~~iL~~~~~~p~i~~~~a~~~~~k~~~E~iFRS~~~~L~Dn~t~Ey~F~~~FF~~~~~~~~~if~~If~~ 328 (508)
T PF04129_consen 249 RSSVFSLGRRIDILNSELDAPIIVPQIAEDNSQKYPIEEIFRSLNKALIDNATSEYLFISEFFSGSGDAAEDIFNQIFEP 328 (508)
T ss_pred chhhhhhhHHHHHHhhcccCCccccchhhcccccCCHHHHHHHHHHHHHHhhhHHHHHHHHHHcccccchHHHHHHHHHH
Confidence 233433 5776665 333334433221 2467789999999999999999988889997642 122347777888
Q ss_pred HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005012 393 LSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIAN 469 (719)
Q Consensus 393 Lc~~LYD~lRp~Ii~e~~L~~Lcel~~iL~~e~lee~~~~~~~~~~~~~~~~~~lLqDvQeRLiFRaq~yi~~~I~~ 469 (719)
-...+.+.+...+-...|.--|-=++-+.+....+ ..+++ ...++.++. -+.--||-|-|..++..|..
T Consensus 329 t~~~~~~~~~~~l~~~~D~iglll~Irl~~~~~~~--~~~R~--ip~ld~y~~----~~~~~LWprF~~i~d~nieS 397 (508)
T PF04129_consen 329 TFSLLQEFTEQLLSNSYDAIGLLLCIRLNQRYQFE--MQRRR--IPVLDSYLN----SLLMLLWPRFQKIMDANIES 397 (508)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH--HHhCC--CCchHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 88888888777655455544333233333332111 12221 123333333 34444677777777766653
No 8
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=90.67 E-value=41 Score=39.61 Aligned_cols=137 Identities=16% Similarity=0.277 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Q 005012 115 HYVNTLMGRIQTCDDILRQVDGTLDLFN----ELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELE 190 (719)
Q Consensus 115 ~y~~~L~~~~~~~d~ll~~~~~~l~~l~----~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le 190 (719)
.-+.+|-.....||.+|.++...|..|. .+..+-..+++|++.++-.=+ ..|....++++.|..-.-.=+-++
T Consensus 75 ~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~---Nrq~v~s~Ls~fVdd~iVpp~lI~ 151 (683)
T KOG1961|consen 75 ENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLE---NRQAVESKLSQFVDDLIVPPELIK 151 (683)
T ss_pred hhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHH---hHHHHHHHHHHHhccccCCHHHHH
Confidence 3455666778899999999888876654 455666666667666665433 334444444444443332222222
Q ss_pred HHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 005012 191 NIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLK---FRQLQSRALGMIRSHVLSVLKSA 260 (719)
Q Consensus 191 ~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~r---fkqcltRAl~LIr~~~~~~L~~~ 260 (719)
.|.. . -|+..+|..-|+.|+.=+.+.+.-...||+.....- -..+..+|++-||.|++..++..
T Consensus 152 ~I~~---g---~vne~~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~~f 218 (683)
T KOG1961|consen 152 TIVD---G---DVNEPEFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIKAF 218 (683)
T ss_pred HHHc---C---CCCchHHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1 356779999999999999999977777777763221 22456789999999999887763
No 9
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.87 E-value=63 Score=34.25 Aligned_cols=108 Identities=14% Similarity=0.234 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 005012 115 HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAA 194 (719)
Q Consensus 115 ~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~itr 194 (719)
.|...+.......+.+-.++......++.|..+-..+..+...+....+..+..=..|....+.+...+. .+..
T Consensus 35 ~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~------~l~~ 108 (264)
T PF06008_consen 35 SYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQ------ELIE 108 (264)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 3344444444444444444555555555555555555555555555555555555555555555555433 2332
Q ss_pred h---hCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCc
Q 005012 195 S---FYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYA 229 (719)
Q Consensus 195 ~---L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fk 229 (719)
+ ++.-+....+.++..+|..++.-|.-|..+ +|.
T Consensus 109 ~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r-~f~ 145 (264)
T PF06008_consen 109 QVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR-DFT 145 (264)
T ss_pred HHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc-cch
Confidence 2 222122456789999999999999999888 454
No 10
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.42 E-value=78 Score=34.54 Aligned_cols=180 Identities=17% Similarity=0.239 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhC--CCCCcc
Q 005012 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFY--SPNMNV 203 (719)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~itr~L~--sp~~~V 203 (719)
.|+.|-+.++..-..++.|...+..+...++...+-+.+|=..-......|..|+.+|.=.+.--.--+..+ +++..+
T Consensus 41 ~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~ 120 (297)
T KOG0810|consen 41 DVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRT 120 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchh
Confidence 566677777777777888888888899999999999999998889999999999999875544433333322 334345
Q ss_pred CCccHHHHHHHHHHHHHHhhhCCCCcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcch
Q 005012 204 GNGNFFHLLKRLDECILYVEGNPQYAE-SSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGV 282 (719)
Q Consensus 204 ~~~~F~~~L~~LD~ci~Fl~~hp~fkd-a~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~~~l~~~~~~~~~~s~~~ 282 (719)
....+..+..++-+-|. +|.. -..|+.+|+.=..|=+..+.. +.++.+..+++-+.| +.
T Consensus 121 rrtq~~~~~kkf~~~M~------~f~~~~~~~r~~~k~~i~Rql~i~~~------~~~~de~ie~~ie~g--------~~ 180 (297)
T KOG0810|consen 121 RRTQTSALSKKLKELMN------EFNRTQSKYREEYKERIQRQLFIVGG------EETTDEEIEEMIESG--------GS 180 (297)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhCC------CcCChHHHHHHHHCC--------Ch
Confidence 55555555555555554 2322 235666666555554443332 123333223332211 11
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHhhhC-hhHHHHHHHHHHHHHHH
Q 005012 283 EASLIYVRFKAAASELKPVLEEIESRSS-KKEYVQILEECHKLYCE 327 (719)
Q Consensus 283 ~~aLlY~kF~~~a~~lk~Li~eie~R~~-~~Ey~slL~dc~~~Yf~ 327 (719)
. ...=+-+. .....++.+.+++.|.+ -.....-+.|+|+.+..
T Consensus 181 ~-~f~~~~i~-~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlD 224 (297)
T KOG0810|consen 181 E-VFTQKAIQ-DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLD 224 (297)
T ss_pred H-HHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111 33468889999999973 34666668888888765
No 11
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=74.57 E-value=33 Score=36.58 Aligned_cols=104 Identities=14% Similarity=0.237 Sum_probs=73.0
Q ss_pred hHHHHHHHHH----HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005012 91 TNQFYNWFTD----LELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (719)
Q Consensus 91 ~~~F~~W~~~----~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (719)
...+..+|.. -+..+..+...+|..+.+.+......=..|+.++...-+.+.... .....+..-+..|..|.
T Consensus 176 i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~----~~~~~~~~r~~~~~~l~ 251 (296)
T PF13949_consen 176 ISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSR----KSDQEQKERESALQRLE 251 (296)
T ss_dssp HHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHH
Confidence 4556666653 345666666677888888888888888888877777766664443 22222355566666677
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhhCC
Q 005012 167 IEKQRLIEFAEAVQSKLKYFDELENIAASFYS 198 (719)
Q Consensus 167 ~eq~~L~~lae~I~~~L~yF~~Le~itr~L~s 198 (719)
.--....++...|.+-++||+.|..+..+|..
T Consensus 252 ~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~ 283 (296)
T PF13949_consen 252 AAYDAYKELSSNLEEGLKFYNDLLEILNKLQQ 283 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66777779999999999999999998887643
No 12
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=71.94 E-value=44 Score=36.78 Aligned_cols=104 Identities=10% Similarity=0.178 Sum_probs=79.4
Q ss_pred hHHHHHHHHHH----HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005012 91 TNQFYNWFTDL----ELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (719)
Q Consensus 91 ~~~F~~W~~~~----e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (719)
...+..++... ...+-.+.-.+|..+.++|......=+.|+.++...-+.|..+... ...++.-+...++|-
T Consensus 226 ~~~ll~~~~~~~~~~~e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~----~~~~~~r~~~l~~L~ 301 (342)
T cd08915 226 LPKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNS----NDSLDPREEALQDLE 301 (342)
T ss_pred cHHHHHHhhccccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHHHHHH
Confidence 36777887532 2456667778899999999999999999999988888888666443 445555556666666
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhhCC
Q 005012 167 IEKQRLIEFAEAVQSKLKYFDELENIAASFYS 198 (719)
Q Consensus 167 ~eq~~L~~lae~I~~~L~yF~~Le~itr~L~s 198 (719)
.--....++...+.+-++||+.|-.+..+|..
T Consensus 302 ~ay~~y~el~~~l~eG~~FY~dL~~~~~~l~~ 333 (342)
T cd08915 302 ASYKKYLELKENLNEGSKFYNDLIEKVNRLLE 333 (342)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66677779999999999999999999887743
No 13
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.41 E-value=67 Score=34.41 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=68.5
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 005012 106 KSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRL----VIEKQRLIEFAEAVQS 181 (719)
Q Consensus 106 ~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~L----l~eq~~L~~lae~I~~ 181 (719)
....+.+|..-...+..-..+.+.|..+++++....+++...........+.|+..-+.+ -.+++-|.+-+..+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888999999999999999988888888888888777655433 2333333333333322
Q ss_pred cccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHH
Q 005012 182 KLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDE 217 (719)
Q Consensus 182 ~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ 217 (719)
+=.==.+|| .++++.+|.+|+.|++.
T Consensus 113 nG~~t~Yid----------vil~SkSfsD~IsRvtA 138 (265)
T COG3883 113 NGTATSYID----------VILNSKSFSDLISRVTA 138 (265)
T ss_pred cCChhHHHH----------HHHccCcHHHHHHHHHH
Confidence 111111111 14789999999999874
No 14
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=63.91 E-value=1.1e+02 Score=31.23 Aligned_cols=114 Identities=16% Similarity=0.233 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005012 91 TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQ 170 (719)
Q Consensus 91 ~~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~ 170 (719)
...--+|....+..+....++--+.++.....+......+-.+++.....+..|..++.....+...+....+.|.....
T Consensus 64 ~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 64 EEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999998775554
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHH
Q 005012 171 RLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDEC 218 (719)
Q Consensus 171 ~L~~lae~I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~c 218 (719)
-......|...+.-+ +..-...+|-.|=++|+..
T Consensus 144 -~a~a~~~~~~~~~~~-------------~~~~a~~~~er~e~ki~~~ 177 (221)
T PF04012_consen 144 -AAKAQKKVNEALASF-------------SVSSAMDSFERMEEKIEEM 177 (221)
T ss_pred -HHHHHHHHHHHhccC-------------CccchHHHHHHHHHHHHHH
Confidence 333333333322222 1111235677776666663
No 15
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=63.53 E-value=89 Score=26.78 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=54.8
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005012 99 TDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRL 165 (719)
Q Consensus 99 ~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~L 165 (719)
+++|.++.+.-+.-...|-.++......+.++-.....+-..-..|+.+....+.+...|.++-++|
T Consensus 2 teLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 2 TELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678888888888888888899888888888888888888888888888888888877777776655
No 16
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=60.11 E-value=38 Score=39.34 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 005012 113 YRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENI 192 (719)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~i 192 (719)
|+..++.|-. ..|+...|.+++.+...++.+..+|...-....++...|+.+-.--.++..++...+.-|.|++++-.-
T Consensus 79 y~dL~~~ly~-~dhYk~aLgqv~~ak~lv~~vakdyvrLlk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqh 157 (620)
T KOG1490|consen 79 YADLLNILYD-RDHYKIALGQVSTAKHLVENVARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQH 157 (620)
T ss_pred hHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4444444433 458999999999999999999999999999999999999988888999999999999999999998887
Q ss_pred HHhhC-----CCCC------ccCCccHHHHHHHHHHHHH
Q 005012 193 AASFY-----SPNM------NVGNGNFFHLLKRLDECIL 220 (719)
Q Consensus 193 tr~L~-----sp~~------~V~~~~F~~~L~~LD~ci~ 220 (719)
..++- .+++ .|+..+|...+.+=|.-+.
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevq 196 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ 196 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccC
Confidence 77754 3332 4777889988888776543
No 17
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=59.41 E-value=95 Score=34.26 Aligned_cols=93 Identities=12% Similarity=0.228 Sum_probs=70.0
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005012 103 LAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (719)
Q Consensus 103 ~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~ 182 (719)
..+..+...+|..+.+.|......=+.|+.++..+-..|... +..+...++.=......|..--....++...+.+-
T Consensus 236 e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~---r~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG 312 (337)
T cd09234 236 EDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPV---RKALSETKQKRESTISSLIASYEAYEDLLKKSQKG 312 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 335566667899999999999988889998888877777544 22224445555566666666667778999999999
Q ss_pred ccchhhHHHHHHhhCC
Q 005012 183 LKYFDELENIAASFYS 198 (719)
Q Consensus 183 L~yF~~Le~itr~L~s 198 (719)
++||+.|..+..+|..
T Consensus 313 ~~FY~dL~~~v~~~~~ 328 (337)
T cd09234 313 IDFYKKLEGNVSKLLQ 328 (337)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887743
No 18
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=57.48 E-value=71 Score=35.45 Aligned_cols=97 Identities=19% Similarity=0.287 Sum_probs=72.8
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 102 ELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNEL---QLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEA 178 (719)
Q Consensus 102 e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L---~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~ 178 (719)
+..+-.+...+|.-+.+.|......=+.|+.++...-+.|... ..........++.=....++|-.--....++...
T Consensus 248 ~e~lF~~eL~kf~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~~ 327 (356)
T cd09237 248 EKQLFPEELEKFKPLQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFKKFSAG 327 (356)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555666667899999999999999899998888877766433 2222233445556666667777777778899999
Q ss_pred HHhcccchhhHHHHHHhhCC
Q 005012 179 VQSKLKYFDELENIAASFYS 198 (719)
Q Consensus 179 I~~~L~yF~~Le~itr~L~s 198 (719)
+..-++||+.|-.+...|..
T Consensus 328 l~~G~~FY~dL~~~~~~l~~ 347 (356)
T cd09237 328 LPKGLEFYDDLLKMAKDLAK 347 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887643
No 19
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=54.14 E-value=2.1e+02 Score=27.52 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 91 TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNEL 144 (719)
Q Consensus 91 ~~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L 144 (719)
..+|.+++..++..+.+--.++|.. +...+..+..++..++++-+.+..|
T Consensus 42 ~~~f~~~~~~~~~~L~~vV~eh~q~----Fn~sI~sy~~i~~~i~~sq~~i~~l 91 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEVVNEHYQG----FNSSIGSYSQILSSISESQERIREL 91 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999998877777765 4555555666666666776666666
No 20
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=53.92 E-value=1.4e+02 Score=25.39 Aligned_cols=75 Identities=9% Similarity=0.307 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHH
Q 005012 90 NTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVAT----KTKTLHDACDRL 165 (719)
Q Consensus 90 ~~~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~----kT~~l~~~ce~L 165 (719)
...+|..|....+..+..... -.-++.+......+..+..++...-..++.+...-..+.+ .+..+...++.|
T Consensus 9 ~~~~l~~Wl~~~e~~l~~~~~---~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l 85 (105)
T PF00435_consen 9 EADELLDWLQETEAKLSSSEP---GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEEL 85 (105)
T ss_dssp HHHHHHHHHHHHHHHHCSCTH---SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 357899999999999844332 1122334444444455554444444444444444444422 234444444444
Q ss_pred HH
Q 005012 166 VI 167 (719)
Q Consensus 166 l~ 167 (719)
-.
T Consensus 86 ~~ 87 (105)
T PF00435_consen 86 NQ 87 (105)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 21
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=53.63 E-value=4.9e+02 Score=31.69 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005012 135 DGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKY 185 (719)
Q Consensus 135 ~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~y 185 (719)
+.+.+.++.|...-..|..+...+=++=+.+-..+.+-.+-.+-|+-+..+
T Consensus 2 ~~~~~~f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef 52 (710)
T PF07393_consen 2 QEAIDSFQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEF 52 (710)
T ss_pred hHHHHHHHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888888888888877777766666555544443
No 22
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=51.58 E-value=1e+02 Score=34.08 Aligned_cols=88 Identities=13% Similarity=0.215 Sum_probs=58.3
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005012 106 KSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKY 185 (719)
Q Consensus 106 ~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~y 185 (719)
-.++..+|..+.+.|......=+.|+.++...-+.|..+... ...++.=+..-..|-.--....++...+.+-++|
T Consensus 242 F~~eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~~~----~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~kF 317 (339)
T cd09238 242 FKEELKKYDSVREAVSKNISSQDDLLSRLRALNEKFSQIFDV----EGWRAATESHATQIRAAVAKYRELREGMEEGLRF 317 (339)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344556788888888888888888888888877777654322 1111111222223333334556888999999999
Q ss_pred hhhHHHHHHhhC
Q 005012 186 FDELENIAASFY 197 (719)
Q Consensus 186 F~~Le~itr~L~ 197 (719)
|+.|-.+..+|.
T Consensus 318 Y~dL~~~~~~l~ 329 (339)
T cd09238 318 YSGFQEAVRRLK 329 (339)
T ss_pred HHHHHHHHHHHH
Confidence 999998887763
No 23
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=49.84 E-value=5.1e+02 Score=30.79 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005012 91 TNQFYNWFTDLELAMKSETEEKYR---HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVI 167 (719)
Q Consensus 91 ~~~F~~W~~~~e~~~~~~~~~~y~---~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~ 167 (719)
..+.-.|.+.|+..+..-..+.+. ............++.++.++....+.++++.+. .+ .+.+...-.....
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~--~~---~~~i~~~l~~a~~ 83 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQS--EI---ENEIQPQLRDAAE 83 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--hc---cchhHHHHHHHHH
Confidence 446667788888777766665542 233345555667777777777777777555433 01 1223333333333
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhh--CCCCcChHHH
Q 005012 168 EKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEG--NPQYAESSVY 234 (719)
Q Consensus 168 eq~~L~~lae~I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~--hp~fkda~~Y 234 (719)
+...|..-.+....-+.--..|..|-..|.+-...+..++|......|++.=.-|.. .+.+.+..+|
T Consensus 84 e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~ 152 (593)
T PF06248_consen 84 ELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKIL 152 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHH
Confidence 333333333333333333333333333333322244667777655555555555554 4566665444
No 24
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=49.38 E-value=6e+02 Score=31.45 Aligned_cols=170 Identities=18% Similarity=0.254 Sum_probs=95.8
Q ss_pred cHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhh
Q 005012 207 NFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASL 286 (719)
Q Consensus 207 ~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~~~l~~~~~~~~~~s~~~~~aL 286 (719)
....-|..+-.||.=+..=|+|.|...-+..++.= --.+++--++..|.. . ..
T Consensus 148 ~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nr---LEa~vsp~Lv~al~~-----------~---------~~---- 200 (766)
T PF10191_consen 148 KIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNR---LEALVSPQLVQALNS-----------R---------DV---- 200 (766)
T ss_pred HHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH---HHHHhhHHHHHHHHh-----------c---------CH----
Confidence 45567888888888888888887766555544432 223333333332221 0 01
Q ss_pred hHHHHHHHHHhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcc---CCchhhHHhHHHHHHH
Q 005012 287 IYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKK---ETLPSLTRSGCAYLMQ 363 (719)
Q Consensus 287 lY~kF~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~e~~~~---~~l~~l~r~~~~~l~~ 363 (719)
..+..+..++..|.+ +.+..+.|+.+|.. |+.+.| .++... .++.....+.+..+..
T Consensus 201 ------~~~~~~~~if~~i~R----------~~~l~~~Y~~~r~~---~l~~~W-~~~~~~~~~~~~~~~L~~fyd~ll~ 260 (766)
T PF10191_consen 201 ------DAAKEYVKIFSSIGR----------EPQLEQYYCKCRKA---PLQRLW-QEYCQSDQSQSFAEWLPSFYDELLS 260 (766)
T ss_pred ------HHHHHHHHHHHHcCC----------HHHHHHHHHHHHHH---HHHHHH-HHHhhhccchhHHHHHHHHHHHHHH
Confidence 122233344444422 34567889999984 555555 333322 3577888888899999
Q ss_pred HHHHHHHhhchhCCCCcc-ChhchhhhHHHHHHHHHHhhcccccc-cC--CHHHHHHHHHHHHH
Q 005012 364 VCQLEHQLFDHFFPSSSE-DISSLAPLIDPLSTFLYDILRPKLIH-ET--NVDLLCELVDILKV 423 (719)
Q Consensus 364 ~C~dE~~Lf~~FF~~~~~-~~~~l~~~le~Lc~~LYD~lRp~Ii~-e~--~L~~Lcel~~iL~~ 423 (719)
.++.|.+-..+.||.+.. -..-+.+.|..|.-.+...+.-.+-. .. .++.|+++-.+-..
T Consensus 261 ~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~ 324 (766)
T PF10191_consen 261 LLHQELKWCSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEH 324 (766)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHH
Confidence 999999999999998641 00122333333333333333333211 12 27777776655443
No 25
>PF11554 DUF3232: Protein of unknown function (DUF3232); InterPro: IPR021618 This bacterial family of proteins has no known function. ; PDB: 2RDC_A.
Probab=49.05 E-value=74 Score=30.89 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=48.7
Q ss_pred HHHHHhhhCCCCcChHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhHHH
Q 005012 217 ECILYVEGNPQYAESSVYLLKFRQLQSRA------LGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVR 290 (719)
Q Consensus 217 ~ci~Fl~~hp~fkda~~Y~~rfkqcltRA------l~LIr~~~~~~L~~~~~~V~~~l~~~~~~~~~~s~~~~~aLlY~k 290 (719)
.-+.|+.+| .|-++.-..||+.+.... +.+|...+.+ ++.-..-|. ..+..+.+.|
T Consensus 7 ~~~~~~~~~--~~~~~~~~~rf~~v~~~~~~D~~~l~liE~~ids-~~~Y~~~V~---------------~mE~~l~t~r 68 (152)
T PF11554_consen 7 NVVSFVSSH--HKGSEETMNRFKRVISITKDDEDALDLIEELIDS-FKEYVLIVY---------------RMEDQLQTWR 68 (152)
T ss_dssp --------------TTSHHHHHHHHHHHHTTSHHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHC
T ss_pred hHHHHHHHH--HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHH
Confidence 345566554 366777788888776544 4444443322 222222121 1245788999
Q ss_pred HHHHHHhHHHHHHHHHhhhChhHHHHHHHHHH
Q 005012 291 FKAAASELKPVLEEIESRSSKKEYVQILEECH 322 (719)
Q Consensus 291 F~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~ 322 (719)
|+--++.+|.+++++.++- +..+.+++++|+
T Consensus 69 frlegeeYRd~vE~LDr~R-tnaH~a~ISd~k 99 (152)
T PF11554_consen 69 FRLEGEEYRDLVEELDRTR-TNAHNAAISDCK 99 (152)
T ss_dssp CTS-HHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999643 457788888887
No 26
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.97 E-value=2.3e+02 Score=34.75 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCC
Q 005012 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGN 205 (719)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~itr~L~sp~~~V~~ 205 (719)
+...+-.+.+.-++.+.++.+.-..+.++...|.+.+++..+.|+.|.+-++.+-..+. ...|.++..-
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~-----------~~~P~LS~AE 634 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN-----------SQLPVLSEAE 634 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccCCCCCHHH
Confidence 34445566667778888888888999999999999999999999888877766544321 2346666555
Q ss_pred ccHHHHHHHHHHHH
Q 005012 206 GNFFHLLKRLDECI 219 (719)
Q Consensus 206 ~~F~~~L~~LD~ci 219 (719)
..|..-|+++.+-+
T Consensus 635 r~~~~EL~~~~~~l 648 (717)
T PF10168_consen 635 REFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777777755
No 27
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=48.10 E-value=4.7e+02 Score=29.80 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhcccchhhHHHHHHhhCCCCC---------cc---CCccHHHHHHHHHHHHHHhhhCC-
Q 005012 161 ACDRLVIEKQRL-IEFAEAVQSKLKYFDELENIAASFYSPNM---------NV---GNGNFFHLLKRLDECILYVEGNP- 226 (719)
Q Consensus 161 ~ce~Ll~eq~~L-~~lae~I~~~L~yF~~Le~itr~L~sp~~---------~V---~~~~F~~~L~~LD~ci~Fl~~hp- 226 (719)
.-+.++.+...| .++|+-+..-=+||+.=-...+-..+... .| ....-.+++..|.+.+.=|.++.
T Consensus 193 ~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~ 272 (412)
T PF04108_consen 193 LMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEE 272 (412)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555 56777788888899988888776544211 12 33557778888888888887653
Q ss_pred C----CcChHHHHHHHHHHHHHHHHHHHHHH
Q 005012 227 Q----YAESSVYLLKFRQLQSRALGMIRSHV 253 (719)
Q Consensus 227 ~----fkda~~Y~~rfkqcltRAl~LIr~~~ 253 (719)
. ..+...........+..++..++.+-
T Consensus 273 ~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (412)
T PF04108_consen 273 RTKKLLQSQRDHIRELYNALSEALEELRKFG 303 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33333444444444444444444433
No 28
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.45 E-value=1.9e+02 Score=33.30 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=57.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005012 111 EKYRHYVN-TLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (719)
Q Consensus 111 ~~y~~y~~-~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L 183 (719)
+.+..|.+ +|+.....+...+...++.-...+++......|+.+-..++..-+++-+|.+.+.++-..+.+++
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44445555 89999999999999999988899999999999998888888888888777777766555555443
No 29
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=46.77 E-value=2.6e+02 Score=29.65 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005012 95 YNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIE 174 (719)
Q Consensus 95 ~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~ 174 (719)
.+|-.+|+.+ ++.|.++..+++.+ |..|=... ..+..|-..-..|...-+-|+..-+-++..|+.|+.
T Consensus 81 NkWs~el~~Q-----e~vF~~q~~qvNaW----Dr~LI~ng---ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~ 148 (254)
T KOG2196|consen 81 NKWSLELEEQ-----ERVFLQQATQVNAW----DRTLIENG---EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELED 148 (254)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHhHH----HHHHHhCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777664 55677776666654 44442211 233344444455556666677777777777777766
Q ss_pred HHHHHHhccc
Q 005012 175 FAEAVQSKLK 184 (719)
Q Consensus 175 lae~I~~~L~ 184 (719)
+-..+++.+.
T Consensus 149 ~L~~lE~k~~ 158 (254)
T KOG2196|consen 149 LLDPLETKLE 158 (254)
T ss_pred HHHHHHHHHh
Confidence 6555555443
No 30
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=46.75 E-value=1.6e+02 Score=32.68 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=66.7
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005012 103 LAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (719)
Q Consensus 103 ~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~ 182 (719)
..+-.+...+|.-+.+.|......=+.|+.++...-+.|...... ...++.-......|-.--....++...+.+-
T Consensus 253 e~lf~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~~~~----~~~~~~re~~lq~L~~ay~~y~el~~nl~eG 328 (353)
T cd09236 253 EDLFDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAFLQSRKG----DPATKERERALQSLDLAYFKYKEIVSNLDEG 328 (353)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567799999999999888889998888887777543221 2334444555666666667778999999999
Q ss_pred ccchhhHHHHHHhhC
Q 005012 183 LKYFDELENIAASFY 197 (719)
Q Consensus 183 L~yF~~Le~itr~L~ 197 (719)
++||+.|-.+..+|.
T Consensus 329 ~kFY~dL~~~~~~~~ 343 (353)
T cd09236 329 RKFYNDLAKILSQFR 343 (353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988877764
No 31
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=44.60 E-value=2e+02 Score=25.15 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=13.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005012 150 AVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (719)
Q Consensus 150 ~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~ 184 (719)
.+..+++.+-+..+.-++.-..+.+-+.++++.++
T Consensus 51 ~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 51 DLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444333
No 32
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=44.09 E-value=4.3e+02 Score=28.26 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005012 211 LLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRS 270 (719)
Q Consensus 211 ~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~~~l~~ 270 (719)
+=+.+..--.||.+||.|++.. -+.--..|..|--.++-.++.+.|=.+..+|.+++.+
T Consensus 33 ~~~a~~~E~~fF~~~~~~~~~~-~~~G~~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~ 91 (295)
T PF01031_consen 33 IEEARQKEKEFFSNHPWYSSPA-DRCGTPALRKRLSELLVEHIRKSLPSLKSEIQKKLQE 91 (295)
T ss_dssp HHHHHHHHHHHHHHSTTTGGGG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCcc-cccchHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3456778889999999999833 2333355666666777777777777777777666543
No 33
>PRK09039 hypothetical protein; Validated
Probab=43.54 E-value=5e+02 Score=28.84 Aligned_cols=133 Identities=15% Similarity=0.084 Sum_probs=80.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHH
Q 005012 107 SETEEKYRHYVNTLMGRIQTCDDIL----RQVDGTLDLFNELQLQHHAVATKTKTLHDACDR----LVIEKQRLIEFAEA 178 (719)
Q Consensus 107 ~~~~~~y~~y~~~L~~~~~~~d~ll----~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~----Ll~eq~~L~~lae~ 178 (719)
+++-+....-+++|+..+...-.+| ......-..+.+|+.+|......=..+..+-+. .-..+.++..+.++
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~ 124 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence 3334445555555655555554444 223333444445555555444444444443222 23346667777777
Q ss_pred HHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHH
Q 005012 179 VQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRAL 246 (719)
Q Consensus 179 I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl 246 (719)
+.+-..-|++--+-..+|+.--. ....-|..|+..|+..+..- +++...+..+++-+..|+
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~-----aLr~Qla~le~~L~~ae~~~--~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIA-----ALRRQLAALEAALDASEKRD--RESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 77777777777766666665322 23334999999999998766 888888888888888777
No 34
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=42.81 E-value=1.5e+02 Score=36.14 Aligned_cols=102 Identities=17% Similarity=0.289 Sum_probs=60.0
Q ss_pred hhhcChHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhh
Q 005012 86 AVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQH-----------HAVATK 154 (719)
Q Consensus 86 ~~i~~~~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~-----------~~V~~k 154 (719)
+.+..+.|+.+||.+=-.. +..|..-+ +.||.++..|..|-+.| .... .
T Consensus 33 a~~~~~~qi~~Wi~k~k~~------------l~~L~~~l-------~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~-~ 92 (683)
T PF08580_consen 33 ALSGAAEQILDWIQKAKDV------------LYGLREGL-------EEIDSAISRFLDLIEVYVSAIEDLQLREDIAN-S 92 (683)
T ss_pred hhHHHHHHHHHHHHHHHHH------------HHHHHHhH-------HHHHHHHHHHHHHHHhhccccccccccccccc-c
Confidence 4455677889998753332 22332222 44444444444444444 2333 5
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHh
Q 005012 155 TKTLHDACDRLVI-EKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYV 222 (719)
Q Consensus 155 T~~l~~~ce~Ll~-eq~~L~~lae~I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl 222 (719)
.-++.+.|.+|+. =+..|..+-+.+.--+.|.+-.+.+ ...+-..||+|+.-+
T Consensus 93 ~~dl~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~v---------------lg~l~~EIe~~~~~v 146 (683)
T PF08580_consen 93 LFDLIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDV---------------LGDLDNEIEECIRLV 146 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 7789999999987 4445556666666666655544443 345667889988764
No 35
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.08 E-value=4.2e+02 Score=27.31 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------chh
Q 005012 116 YVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK--------YFD 187 (719)
Q Consensus 116 y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~--------yF~ 187 (719)
.++.+..-.+.-..--++.+++|+.|..+ |.-..+.|....+.|-.+-...+..|++++.++. +|+
T Consensus 26 lvdrVe~Ardsq~eaqeQF~sALe~f~sl------~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~ 99 (201)
T PF11172_consen 26 LVDRVEDARDSQQEAQEQFKSALEQFKSL------VNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFD 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555433 2233444444444444444444444444444432 444
Q ss_pred hHHHHHHhhCCCC
Q 005012 188 ELENIAASFYSPN 200 (719)
Q Consensus 188 ~Le~itr~L~sp~ 200 (719)
+-+.=....++|+
T Consensus 100 EWe~EL~~Y~~~s 112 (201)
T PF11172_consen 100 EWEQELDQYSNAS 112 (201)
T ss_pred HHHHHHHHHcCHH
Confidence 4444444445554
No 36
>smart00150 SPEC Spectrin repeats.
Probab=40.22 E-value=2.3e+02 Score=23.93 Aligned_cols=91 Identities=13% Similarity=0.248 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHH
Q 005012 90 NTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVAT----KTKTLHDACDRL 165 (719)
Q Consensus 90 ~~~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~----kT~~l~~~ce~L 165 (719)
+..++.+|....+..+.+... -.-++.+....+.++.+..+++..-..++.+...-..+.+ ....+...++.|
T Consensus 6 ~~~~l~~Wl~~~e~~l~~~~~---~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l 82 (101)
T smart00150 6 DADELEAWLSEKEALLASEDL---GKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEEL 82 (101)
T ss_pred HHHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 467889999999966654322 1234445555555555555554444444444444333332 233455555555
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 005012 166 VIEKQRLIEFAEAVQSKL 183 (719)
Q Consensus 166 l~eq~~L~~lae~I~~~L 183 (719)
-..-..|...++.-...|
T Consensus 83 ~~~w~~l~~~~~~r~~~L 100 (101)
T smart00150 83 NERWEELKELAEERRQKL 100 (101)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 555555555555544433
No 37
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=39.71 E-value=42 Score=31.76 Aligned_cols=105 Identities=12% Similarity=0.216 Sum_probs=36.3
Q ss_pred hhhhcC-hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005012 85 EAVLVN-TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACD 163 (719)
Q Consensus 85 ~~~i~~-~~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce 163 (719)
..++++ -.+.-.+...+..++.+--...|..|++ |.++....++. ++.+..-+..+...-..|.+.-..-.+..+
T Consensus 25 ~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~-Ls~~L~g~~~~---i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~ 100 (133)
T PF06148_consen 25 YVSLEDLRKDLRSYSKELKNELIELINDDYADFVS-LSTNLVGMDEK---IEELRKPLSQFREEVESVRDELDNTQEEIE 100 (133)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355665 4677778888999998888888888877 66665555554 444555666666667777777777788888
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 005012 164 RLVIEKQRLIEFAEAVQSKLKYFDELENIA 193 (719)
Q Consensus 164 ~Ll~eq~~L~~lae~I~~~L~yF~~Le~it 193 (719)
..+.+++++.+.-..++..+.+...++.+-
T Consensus 101 ~~l~~~~~l~~~k~~l~~~l~~~~~~~kle 130 (133)
T PF06148_consen 101 DKLEERKELREEKALLKLLLDISESLEKLE 130 (133)
T ss_dssp HHHHHHHHHHHHHHT-SSSSHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 888888888888777777776666665543
No 38
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=37.30 E-value=2.2e+02 Score=25.58 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005012 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (719)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~ 182 (719)
.|+.|-..+..+-..++.|...+...-..+.......++|-.....-..++..|...
T Consensus 9 ~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 65 (117)
T smart00503 9 KVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAK 65 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333322233333333333334444444443
No 39
>COG1084 Predicted GTPase [General function prediction only]
Probab=37.05 E-value=2.5e+02 Score=31.27 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 005012 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (719)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~ 191 (719)
=|+...|-|-+ ++++..-|..++.+-..++.+...|-.-.....+..++.+=.=+--.|...+.+.|+..|.|-...-.
T Consensus 78 FY~eLidvl~d-~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~ 156 (346)
T COG1084 78 FYRELIDVLVD-IDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARD 156 (346)
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35555555553 44777888889999999999999998888777776654444344467888999999999999999988
Q ss_pred HHHhhC-----CCCC------ccCCccHHHHHHH
Q 005012 192 IAASFY-----SPNM------NVGNGNFFHLLKR 214 (719)
Q Consensus 192 itr~L~-----sp~~------~V~~~~F~~~L~~ 214 (719)
.+++|- .|+. +|+..+|...+.+
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~ 190 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTT 190 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhc
Confidence 888864 3433 3666677664443
No 40
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=36.91 E-value=2.4e+02 Score=25.72 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005012 110 EEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRL 172 (719)
Q Consensus 110 ~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L 172 (719)
.+.++.|.......-.++..|-..++++...|.+|...-......+....... +++.|=.++
T Consensus 7 ~eqR~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~ 68 (101)
T PF07303_consen 7 SEQRQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHH
Confidence 45667788888888888888888889998899999888888888888877777 777666665
No 41
>PHA03386 P10 fibrous body protein; Provisional
Probab=35.79 E-value=1.7e+02 Score=26.38 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005012 127 CDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (719)
Q Consensus 127 ~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~ 184 (719)
+-.|++++.+.-+.++.|+.+-..|.+++..|....++| ..+......|+..|.
T Consensus 7 Ll~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa~~~qL----~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 7 LTQILDAVQEVDTKVDALQTQLNGLEEDSQPLDGLPAQL----TELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcchhhhhHHHHH----HHHHHHHHHHHHhcC
Confidence 446778888888888889888888888888888888877 345555555555554
No 42
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=33.75 E-value=8.2e+02 Score=28.47 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCC
Q 005012 170 QRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQY 228 (719)
Q Consensus 170 ~~L~~lae~I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~f 228 (719)
.++.+-.++-..+.+|+..|+++...|.+.. -.+..+.+..|=.+|..+-.|..|
T Consensus 86 ~~l~~~~~ea~d~~~fL~~l~~~~~~l~~~~----~~~i~~~i~~l~~~l~~iw~~S~~ 140 (579)
T PF08385_consen 86 RELKEALNEAKDNNKFLKPLEPPFELLEASD----LSEIQESIPPLFHHLRLIWRISRY 140 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3555777888889999999999999885532 235556666666677667777764
No 43
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=33.44 E-value=3.5e+02 Score=29.89 Aligned_cols=83 Identities=11% Similarity=0.259 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 005012 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (719)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~ 191 (719)
+|..+.++|......=+.|+.++..+-..|.... .+...++.=......|-.--....++...+.+-++||+.|-.
T Consensus 248 ~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~----~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~ 323 (339)
T cd09235 248 VYGPLQKQVQESLSRQESLLANIQVAHQEFSKEK----QSNSGANEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTE 323 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4888888888888888888888877776664321 112223333455555555556677999999999999999998
Q ss_pred HHHhhCC
Q 005012 192 IAASFYS 198 (719)
Q Consensus 192 itr~L~s 198 (719)
+..+|..
T Consensus 324 ~~~~~~~ 330 (339)
T cd09235 324 ILVKFQN 330 (339)
T ss_pred HHHHHHH
Confidence 8887743
No 44
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.15 E-value=1.8e+02 Score=30.37 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005012 120 LMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAE 177 (719)
Q Consensus 120 L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae 177 (719)
.....+..+.+-+++.+.-..++..+.+...+..+...+....++|++|-.+|.+-.+
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3444455556666666667777777777777777777777777777766666655443
No 45
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=31.15 E-value=3.1e+02 Score=27.08 Aligned_cols=14 Identities=0% Similarity=0.155 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHH
Q 005012 91 TNQFYNWFTDLELA 104 (719)
Q Consensus 91 ~~~F~~W~~~~e~~ 104 (719)
+.+.-.+...+...
T Consensus 95 ~~~I~~~i~~i~~~ 108 (213)
T PF00015_consen 95 AKEISEIIEEIQEQ 108 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhh
Confidence 44444455555544
No 46
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=31.14 E-value=3.8e+02 Score=28.44 Aligned_cols=155 Identities=15% Similarity=0.224 Sum_probs=86.2
Q ss_pred cChHHHHHHHHH-HH-HHHhhhcH-HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHH
Q 005012 89 VNTNQFYNWFTD-LE-LAMKSETE-EKYRHYVNTLMG-----RIQTCDDILRQVDGTLDLFNEL-QLQHHAVATKTKTLH 159 (719)
Q Consensus 89 ~~~~~F~~W~~~-~e-~~~~~~~~-~~y~~y~~~L~~-----~~~~~d~ll~~~~~~l~~l~~L-~~~~~~V~~kT~~l~ 159 (719)
.....|++||.. |. ..+.++.+ ..|. +|.. .-+.+|..|+.+...-..+.++ ............++.
T Consensus 6 ~e~~~FL~W~c~~V~~~NvLS~~El~~~~----~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e~~le~Le~el~~l~ 81 (256)
T PF14932_consen 6 EEFESFLDWFCSNVNESNVLSEEELQAFE----ELQKSGKILEGEALDEALKTISAFSPKLLELEEEDLEALEEELEALQ 81 (256)
T ss_pred ccHHHHHHHHHccCChhccCCHHHHHHHH----HHHHcCCcCCHHHHHHHHHHcccccCCccccchHHHHHHHHHHHHHH
Confidence 357899999987 43 33333333 3443 2222 1233444443333222111111 234455666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhHHH-HHHhhCCCCCc------cCCccHHHHHHHHHHHHHHhhh--------
Q 005012 160 DACDRLVIEKQRLIEFAEAVQSKLKYFDELEN-IAASFYSPNMN------VGNGNFFHLLKRLDECILYVEG-------- 224 (719)
Q Consensus 160 ~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~-itr~L~sp~~~------V~~~~F~~~L~~LD~ci~Fl~~-------- 224 (719)
+.++.....-+.+..++..+...+...+.... ....+...+.. -.+.....++..+-.-+.++..
T Consensus 82 ~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~~~~~~~~~~ 161 (256)
T PF14932_consen 82 EYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELAHAHSGQQQN 161 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 77777777777788888888877766655332 33334322211 1233455666666666666653
Q ss_pred CC---CCcChHHHHHHHHHHHHHHHHH
Q 005012 225 NP---QYAESSVYLLKFRQLQSRALGM 248 (719)
Q Consensus 225 hp---~fkda~~Y~~rfkqcltRAl~L 248 (719)
+| .+-+=+.|+.+-.+| +++|++
T Consensus 162 ~~~flsq~~l~~Y~~~ee~~-t~~L~~ 187 (256)
T PF14932_consen 162 PPVFLSQMPLEQYLSQEEQF-TKYLTS 187 (256)
T ss_pred CCchhhhCCHHHHHHHHHHH-HHHHHH
Confidence 22 466788888888888 566653
No 47
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=30.68 E-value=4.7e+02 Score=30.77 Aligned_cols=78 Identities=13% Similarity=0.246 Sum_probs=45.1
Q ss_pred cChHHHHHHHHHHHHHHhhhcHHHHH---------HHHHHHHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 005012 89 VNTNQFYNWFTDLELAMKSETEEKYR---------HYVNTLMG----RIQTCDDIL-------RQVDGTLDLFNELQLQH 148 (719)
Q Consensus 89 ~~~~~F~~W~~~~e~~~~~~~~~~y~---------~y~~~L~~----~~~~~d~ll-------~~~~~~l~~l~~L~~~~ 148 (719)
.+..+.-.|...++.-+..=+...-+ .|++.|.. ....++.+. .+..++...+.++.-.-
T Consensus 397 ~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL 476 (507)
T PF05600_consen 397 QTAESIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKL 476 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56778888998888766554444332 34444333 333333332 33445566666666666
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 005012 149 HAVATKTKTLHDACDRLV 166 (719)
Q Consensus 149 ~~V~~kT~~l~~~ce~Ll 166 (719)
..+.++|+.|+..||+-|
T Consensus 477 ~~l~~~Tr~Lq~~iE~~I 494 (507)
T PF05600_consen 477 DALVERTRELQKQIEADI 494 (507)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666677777777666654
No 48
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=29.72 E-value=4.8e+02 Score=24.58 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcccchhhHH---------HHHHhhCCCCCccCCccHHHHHHH
Q 005012 169 KQRLIEFAEAVQSKLKYFDELE---------NIAASFYSPNMNVGNGNFFHLLKR 214 (719)
Q Consensus 169 q~~L~~lae~I~~~L~yF~~Le---------~itr~L~sp~~~V~~~~F~~~L~~ 214 (719)
+.....+......-|.-|..+. .|.|++.-.+..++.+....++..
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~ 141 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLES 141 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHc
Confidence 4455566666677777777776 344444333323566666666654
No 49
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=29.61 E-value=8.8e+02 Score=27.58 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHH
Q 005012 92 NQFYNWFTDLELAMK-----SETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQ-HHAVATKTKTLHDACDRL 165 (719)
Q Consensus 92 ~~F~~W~~~~e~~~~-----~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~-~~~V~~kT~~l~~~ce~L 165 (719)
..+-.+|.+-...+. ..+.+.|...++-|..-..+.++++..+.+.++.+...... ...+.++...+...+..+
T Consensus 213 ~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~ 292 (412)
T PF04108_consen 213 ESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNAL 292 (412)
T ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 23335566666666666666666666666666666555444 222555556666666666
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHhh
Q 005012 166 VIEKQRLIEFAEAVQSKLKYFDELENIAASF 196 (719)
Q Consensus 166 l~eq~~L~~lae~I~~~L~yF~~Le~itr~L 196 (719)
...-..|.++.+.++.++.-|..++.+....
T Consensus 293 ~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~ 323 (412)
T PF04108_consen 293 SEALEELRKFGERLPSYLAAFHDFEERWEEE 323 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666554443
No 50
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=29.35 E-value=5.8e+02 Score=27.00 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhC
Q 005012 171 RLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGN 225 (719)
Q Consensus 171 ~L~~lae~I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~h 225 (719)
.+..+.+.+.+-...|.....- .-..|+..+..-+|-+-+..-|.|+.+|..+
T Consensus 136 ~l~~l~~~v~~l~~~~~~~~~~--~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y 188 (256)
T PF14932_consen 136 ELNQLLGEVSKLASELAHAHSG--QQQNPPVFLSQMPLEQYLSQEEQFTKYLTSY 188 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccCCCCchhhhCCHHHHHHHHHHHHHHHHHH
Confidence 5556666666555555443211 1234555667788999999999999998753
No 51
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=29.33 E-value=8.7e+02 Score=27.43 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHHHHHHHH
Q 005012 92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQH------HAVATKTKTLHDACDRL 165 (719)
Q Consensus 92 ~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~------~~V~~kT~~l~~~ce~L 165 (719)
.+...=++++-..+......+--...+++....+..+.++.++......++.+-.+. ..++.=|..+.++.+++
T Consensus 230 d~L~~~ltrL~~~~~~~~v~~l~~~~~~~a~~~~~~~~ll~~l~~l~~~l~~ll~~l~~~~lL~Nle~lt~~LA~as~~l 309 (370)
T PLN03094 230 DELVGICTRLAREMEAIGVAKMYALAERAADLMEEARPLLLKIQAMAEDLQPLLSEVRDSGLLKEVEKLTRVAAEASEDL 309 (370)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 344444666666665554555556677777777777777777666666666663322 23444455555555544
Q ss_pred HHHH------HHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHH
Q 005012 166 VIEK------QRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECIL 220 (719)
Q Consensus 166 l~eq------~~L~~lae~I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ci~ 220 (719)
-.-. +.+..+.+.+.+--.-|..++.++..++. .+..+.|..-|.++=++|.
T Consensus 310 ~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~---ft~D~~~r~~Lr~li~~Ls 367 (370)
T PLN03094 310 RRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISG---FTGDEATRRNLKQLIQSLS 367 (370)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHh
Confidence 3331 12355666666666677777777777655 4566678888887766653
No 52
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.77 E-value=7e+02 Score=26.46 Aligned_cols=83 Identities=13% Similarity=0.167 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHH------HHHHH--HHHHHHH
Q 005012 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATK--------TKTLHDACD------RLVIE--KQRLIEF 175 (719)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~k--------T~~l~~~ce------~Ll~e--q~~L~~l 175 (719)
.-+.|++.|+..+.+.+.+...+-.-...+.+...+|..+-.- +..|+..|. ..+.+ ..-.+.+
T Consensus 58 Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f 137 (243)
T cd07666 58 EMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQL 137 (243)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888875554333334444444443332 222332222 22222 1223467
Q ss_pred HHHHHhcccchhhHHHHHH
Q 005012 176 AEAVQSKLKYFDELENIAA 194 (719)
Q Consensus 176 ae~I~~~L~yF~~Le~itr 194 (719)
++.|.+++.|...+-.+.+
T Consensus 138 ~~~Lkeyv~y~~slK~vlk 156 (243)
T cd07666 138 LPVIHEYVLYSETLMGVIK 156 (243)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888888888877776544
No 53
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.76 E-value=5.6e+02 Score=27.81 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cc
Q 005012 114 RHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL--------KY 185 (719)
Q Consensus 114 ~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L--------~y 185 (719)
|.....|....+.+.+=-..|++...+|..|+++|-.=+=.--+=+-+=..-=+|-++|..+.|.+.+.| +|
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKY 150 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKY 150 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Confidence 4455667777777766667788888999999999954211000011111112345567777777777777 58
Q ss_pred hhhHHHHHHhhCC
Q 005012 186 FDELENIAASFYS 198 (719)
Q Consensus 186 F~~Le~itr~L~s 198 (719)
|-.+.--.+||.+
T Consensus 151 FvDINiQN~KLEs 163 (305)
T PF15290_consen 151 FVDINIQNKKLES 163 (305)
T ss_pred HhhhhhhHhHHHH
Confidence 8887766666643
No 54
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=27.62 E-value=6.4e+02 Score=25.35 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCC-ccCCccHHHHHHHHHHHHHHhhh
Q 005012 161 ACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNM-NVGNGNFFHLLKRLDECILYVEG 224 (719)
Q Consensus 161 ~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~itr~L~sp~~-~V~~~~F~~~L~~LD~ci~Fl~~ 224 (719)
..+.++.+-..++.-|+.|... |...|+...+ -+.++++..+...+|+.+++++.
T Consensus 41 ~~~~~~~~i~~lE~~aD~i~~~---------i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~ 96 (214)
T PF01865_consen 41 DVEELLEEIKELEHEADEIKRE---------IREELYKSFITPFDREDILRLISSLDDIADYIED 96 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666677666654 4444544333 25788999999999999999874
No 55
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.40 E-value=4e+02 Score=22.89 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005012 125 QTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (719)
Q Consensus 125 ~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~ 182 (719)
+.++.|-.++..+++.+..|+..-....++-.++.+.-+.|-.+-.+|..=.....++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777777777777776666666555554443
No 56
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=26.64 E-value=7.3e+02 Score=25.65 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005012 111 EKYRHYVNTLMGRIQTCDDILRQVDG---------------TLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEF 175 (719)
Q Consensus 111 ~~y~~y~~~L~~~~~~~d~ll~~~~~---------------~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~l 175 (719)
..++.|.++|......++.-+..+.. +-..|..|...|.....+.-.+..+|.+|=.+-.+|..-
T Consensus 132 naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 132 NAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666655533222 344566899999999999999999999999888888877
Q ss_pred HHHHHhcc
Q 005012 176 AEAVQSKL 183 (719)
Q Consensus 176 ae~I~~~L 183 (719)
+.+.+.+.
T Consensus 212 ~~~~~~~~ 219 (221)
T PF05700_consen 212 AAELKENQ 219 (221)
T ss_pred HHHHhccc
Confidence 77666543
No 57
>PRK15352 type III secretion system protein SsaO; Provisional
Probab=26.46 E-value=4e+02 Score=24.08 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005012 125 QTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEF 175 (719)
Q Consensus 125 ~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~l 175 (719)
.....+..+..+-+..=..|..+|.....+-+.|++..+.|++.+++...+
T Consensus 67 ~qma~lftqaqsfltqrqql~nqyqqlvs~~s~lq~n~nalmk~kekitmv 117 (125)
T PRK15352 67 QQMAGLFTQAQSFLTQRQQLENQYQQLVSRRSELQKNFNALMKKKEKITMV 117 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence 344556667777888888899999999999999999999999877765543
No 58
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.18 E-value=1.2e+03 Score=30.40 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005012 113 YRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAV---------ATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (719)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V---------~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L 183 (719)
|..-..++.......+..+.++++.+..+..+......+ ....+.++..|++++....++ .+.|...+
T Consensus 846 ~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~~~ 922 (1201)
T PF12128_consen 846 VKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRL---REELKKAV 922 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344445555555555555566666555444443333221 112345557777777655443 33333333
Q ss_pred cchh-------------hHHHHHHhhCC-CCCccCCccHHHHHHHHHHHHHHhhhCCCCc
Q 005012 184 KYFD-------------ELENIAASFYS-PNMNVGNGNFFHLLKRLDECILYVEGNPQYA 229 (719)
Q Consensus 184 ~yF~-------------~Le~itr~L~s-p~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fk 229 (719)
..|. ..+....+.+. +...+..++....+..|.+.++.+ ||+++
T Consensus 923 ~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ 980 (1201)
T PF12128_consen 923 ERFKGVLTKHSGSELAENWEELRSEDSFLSDKGINSDDYRQWAPDLQELLDVL--IPQQQ 980 (1201)
T ss_pred HHHHHHHHhccccchHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHhh--hHHHH
Confidence 3332 22333112221 111234556777788888888877 55544
No 59
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=25.80 E-value=4.8e+02 Score=25.05 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=11.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhhHHHHHHhhCCCC
Q 005012 148 HHAVATKTKTLHDACDRLVIEKQRLIEFAEAV-QSKLKYFDELENIAASFYSPN 200 (719)
Q Consensus 148 ~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I-~~~L~yF~~Le~itr~L~sp~ 200 (719)
...+..+-..|...+=+++..+.-+....-.| .+-=.--..|+.+.+.++.|+
T Consensus 74 l~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~p~ 127 (141)
T PF13874_consen 74 LEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNAPA 127 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCch
Confidence 33333334445555555554444443333333 222233355667777788876
No 60
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.43 E-value=7.2e+02 Score=25.18 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005012 113 YRHYVNTLMGRIQTCDDILR 132 (719)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~ 132 (719)
-+.|+++|..++.+.+.+..
T Consensus 19 ~~eyi~~L~~~l~~~~kv~~ 38 (200)
T cd07624 19 MNEYLTLFGEKLGTIERISQ 38 (200)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 35688888887777666654
No 61
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=25.04 E-value=1.5e+02 Score=26.49 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhhhhccchhhhhchHHHHHHHHHHHHHHHHHHH
Q 005012 387 APLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRA 459 (719)
Q Consensus 387 ~~~le~Lc~~LYD~lRp~Ii~e~~L~~Lcel~~iL~~e~lee~~~~~~~~~~~~~~~~~~lLqDvQeRLiFRa 459 (719)
...|+.+.+.+=++|||-.| |.-+.+||..++.+-...++.+....-..+|..-|+..|++=+||+
T Consensus 5 k~nL~af~~yi~ktl~P~yI-------l~~m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~l~~lee~GWFqa 70 (89)
T cd08816 5 KRNLQRFRDYIKKILRPSYI-------LGFMTTWLEDEEVERILSEEEKGVTSAAQLFLDYVLKLEEEGWFQA 70 (89)
T ss_pred HHHHHHHHHHHHHhhchHHH-------HHHHHHhcCHHHHHHHHHHhccChHHHHHHHHHHHHHHccccHHHH
Confidence 34566777777888888755 6778889988764433332223333334556667778889999976
No 62
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=24.86 E-value=6.7e+02 Score=24.60 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005012 123 RIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (719)
Q Consensus 123 ~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (719)
+.+.+....+..+.+++.+++....-..+..+.....+....|-
T Consensus 5 y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~ 48 (157)
T PF04136_consen 5 YLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLH 48 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444444455566666666666666665555555555555444
No 63
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=24.86 E-value=2.3e+02 Score=24.34 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHH
Q 005012 113 YRHYVNTLMGRIQTCDDILRQVDGT-LDLFNELQLQHHAVATKTKTLHDAC 162 (719)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~-l~~l~~L~~~~~~V~~kT~~l~~~c 162 (719)
-++++.++.......-.-+++-+.| |..|++|...+..++.-+++|+-+|
T Consensus 15 lk~~L~~I~~~~~~i~~~ld~~~~ClL~e~e~i~~~f~~~q~~AssyYLq~ 65 (70)
T PF10372_consen 15 LKQYLEQIEEEISQIIQTLDEDDCCLLCEFEEIREKFLDIQTLASSYYLQC 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TT--GGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCceechhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444444444443 6778899999999999999999877
No 64
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=23.65 E-value=4.9e+02 Score=22.58 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005012 115 HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (719)
Q Consensus 115 ~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (719)
.-.++++...+....=++.+-+--+.+++|..........+..|+..+.++=
T Consensus 7 ~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~ 58 (89)
T PF00957_consen 7 QIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLK 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3334444444333333344444455666777777777777777777766653
No 65
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=23.56 E-value=7.8e+02 Score=24.94 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=51.5
Q ss_pred hcChHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005012 88 LVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVI 167 (719)
Q Consensus 88 i~~~~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~ 167 (719)
+.+..+.+...+.-+.....+.-..|..|++.+..-...-+.++.+...+...+..-..+......+...=.+..+.+..
T Consensus 91 ~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ 170 (236)
T PF09325_consen 91 FEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAEN 170 (236)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 33444455555555555555666677777777777766666666677777777777666666555442221333444444
Q ss_pred HHHHHHHHHHHHH
Q 005012 168 EKQRLIEFAEAVQ 180 (719)
Q Consensus 168 eq~~L~~lae~I~ 180 (719)
+-..++.-.+.+.
T Consensus 171 ei~~~~~~~~~~~ 183 (236)
T PF09325_consen 171 EIEEAERRVEQAK 183 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 4333333333333
No 66
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.11 E-value=9.3e+02 Score=29.70 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHH----------hhhhhHHHHHHHHhHhccCCchhhHHhHHHHHHHHHHHHHHhhchhCCCCccCh-
Q 005012 315 VQILEECHKLYCEQR----------LSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDI- 383 (719)
Q Consensus 315 ~slL~dc~~~Yf~~R----------~~LL~p~i~~~l~e~~~~~~l~~l~r~~~~~l~~~C~dE~~Lf~~FF~~~~~~~- 383 (719)
.+-+.++...+..+| -+|..|+++..|..-- +-+|++. ..||..|||..+.|.
T Consensus 147 ~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~N------s~VrsnA----------a~lf~~~fP~~dpd~~ 210 (1005)
T KOG1949|consen 147 HSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARN------SEVRSNA----------ALLFVEAFPIRDPDLH 210 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCc------hhhhhhH----------HHHHHHhccCCCCCcc
Confidence 334555665666666 3566777766654321 1134443 348999999876554
Q ss_pred -hchhhhHHHHHHHHHHhhccccccc--CCHHHHHHHH
Q 005012 384 -SSLAPLIDPLSTFLYDILRPKLIHE--TNVDLLCELV 418 (719)
Q Consensus 384 -~~l~~~le~Lc~~LYD~lRp~Ii~e--~~L~~Lcel~ 418 (719)
+.....++.=-..||+-||.-.+.+ .-+.-+|.+.
T Consensus 211 ~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~ 248 (1005)
T KOG1949|consen 211 AEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKIT 248 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 5667788877888999888776644 3344555544
No 67
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.07 E-value=8.9e+02 Score=25.44 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005012 131 LRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (719)
Q Consensus 131 l~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (719)
-+|++..-+.+...........+.+..+|+.+..|.
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555444444
No 68
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.99 E-value=6.4e+02 Score=29.93 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005012 92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR 171 (719)
Q Consensus 92 ~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~ 171 (719)
..+..+-..++..-...-...|..+...+...+..+..-|++ .--.+..+...|..+.+.-..|.++++.|+.....
T Consensus 425 ~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~---g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~ 501 (569)
T PRK04778 425 NKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE---KPINMEAVNRLLEEATEDVETLEEETEELVENATL 501 (569)
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcCh
Q 005012 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAES 231 (719)
Q Consensus 172 L~~lae~I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda 231 (719)
++.+.+. ..++.+ .|..+=..+.++...| .+-+|+.|
T Consensus 502 lE~~Iqy--------------~nRfr~--------~~~~V~~~f~~Ae~lF-~~~~Y~~a 538 (569)
T PRK04778 502 TEQLIQY--------------ANRYRS--------DNEEVAEALNEAERLF-REYDYKAA 538 (569)
T ss_pred HHHHHHH--------------HhccCC--------CCHHHHHHHHHHHHHH-HhCChHHH
No 69
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.61 E-value=1e+03 Score=26.05 Aligned_cols=40 Identities=13% Similarity=0.359 Sum_probs=25.0
Q ss_pred hhhhhcChHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 005012 84 IEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQ 125 (719)
Q Consensus 84 ~~~~i~~~~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~ 125 (719)
|...+--+..||-||...|....+. -.|-.-++++.....
T Consensus 26 ~Gl~ml~AgA~Y~~yQ~~EQAr~~A--~~fA~~ld~~~~kl~ 65 (301)
T PF06120_consen 26 PGLVMLGAGAWYYFYQNAEQARQEA--IEFADSLDELKEKLK 65 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHH
Confidence 4455556889999998888864443 345555555544443
No 70
>PRK10807 paraquat-inducible protein B; Provisional
Probab=22.40 E-value=6.6e+02 Score=29.85 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHHHHhhhCCC
Q 005012 207 NFFHLLKRLDECILYVEGNPQ 227 (719)
Q Consensus 207 ~F~~~L~~LD~ci~Fl~~hp~ 227 (719)
++..+++.|..=+++|+.||+
T Consensus 508 ~l~~~~r~lr~l~~~L~~~P~ 528 (547)
T PRK10807 508 RLDQVLRELQPVLKTLNEKSN 528 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 456677888888889999996
No 71
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.14 E-value=1.8e+03 Score=29.28 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=34.4
Q ss_pred hhcChHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 87 VLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAV 151 (719)
Q Consensus 87 ~i~~~~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V 151 (719)
.+.....|..-|......+.......|+....++.....+....-++++.+...+..+.......
T Consensus 245 ~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 309 (1353)
T TIGR02680 245 LERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEAL 309 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666555555556665555555555555555544444444444444443333
No 72
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=21.65 E-value=92 Score=29.95 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005012 138 LDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLI 173 (719)
Q Consensus 138 l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~ 173 (719)
.+.++.+.+.|..+..+..++.-.||+|-.|++...
T Consensus 22 ~es~drIKeEf~~lqaq~hslk~E~eKla~EK~emq 57 (135)
T PF03920_consen 22 SESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQ 57 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcchhhcccchHH
Confidence 344455666777777777889999999998887654
No 73
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.54 E-value=6.9e+02 Score=25.97 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=28.2
Q ss_pred ccCCchHHHHHH-HHHhhhhccChhhhhHHHHHHHHH
Q 005012 504 KTWYPPLEKTVS-CLSKLYQCLEQAVFTGLAQEAVEV 539 (719)
Q Consensus 504 ~~wYPpl~ktL~-lLSkLy~~v~~~VF~~LA~eaV~~ 539 (719)
.+|--+.--.|. .||.+|.||+++||-.+-+|+.|.
T Consensus 149 ktw~e~~~~sl~Nflst~~qc~p~pvi~~~~~e~ar~ 185 (241)
T KOG1333|consen 149 KTWIEIYYVSLHNFLSTLFQCMPVPVILNFDAECQRT 185 (241)
T ss_pred hhhhHhhhhhHHhHHHHHHHcCCcceeehHHHHHhcc
Confidence 456666666666 899999999999999888887543
No 74
>PHA03332 membrane glycoprotein; Provisional
Probab=21.28 E-value=3.1e+02 Score=34.86 Aligned_cols=69 Identities=23% Similarity=0.325 Sum_probs=47.6
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhCCCCCcc--CCccHHHHHHHHHHHH--------HHhhhCCCCcC-hHHHHHHHHHH
Q 005012 173 IEFAEAVQSKLKYFDELENIAASFYSPNMNV--GNGNFFHLLKRLDECI--------LYVEGNPQYAE-SSVYLLKFRQL 241 (719)
Q Consensus 173 ~~lae~I~~~L~yF~~Le~itr~L~sp~~~V--~~~~F~~~L~~LD~ci--------~Fl~~hp~fkd-a~~Y~~rfkqc 241 (719)
.+-.+.....-.||.+|...+..+-....-. .-+.|..+|+.|+..- -|++.||+|.- ..+|-+-|++-
T Consensus 972 N~~ie~~~aaalyYQQlnsltnqv~~saskL~~qv~myrTCl~Sl~aG~L~GCP~~~pfl~dnpdy~mv~SVyga~Yrg~ 1051 (1328)
T PHA03332 972 NERIEEVMAAALYYQQLNSLTNQVTQSASKLGYQVGMYRTCLKSLLAGTLAGCPTDAPFLRDNPDYTMVKSVYGALYRGQ 1051 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccCCCCCChhhhcCCcchhhhhhhhhhcccc
Confidence 3444455566789999999988764433222 2367999999998864 58999999874 44566666654
No 75
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=20.99 E-value=9.3e+02 Score=28.97 Aligned_cols=96 Identities=19% Similarity=0.294 Sum_probs=54.7
Q ss_pred hhhhhcChHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005012 84 IEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACD 163 (719)
Q Consensus 84 ~~~~i~~~~~F~~W~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce 163 (719)
+...|....+|++=|..+-+++. .-...++.|-..-+.+.+.++.-..+...+.++++.|+.+-+
T Consensus 26 E~~~l~~~~~~L~~f~~v~~~l~---------------~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~ 90 (618)
T PF06419_consen 26 EKRLLKINQEFLKEFSPVNRQLK---------------RLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKE 90 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777666666655432 222233333333333334444445667777777777777766
Q ss_pred HHHHHHHHHHHHHH----------HHHh-----cccchhhHHHHHH
Q 005012 164 RLVIEKQRLIEFAE----------AVQS-----KLKYFDELENIAA 194 (719)
Q Consensus 164 ~Ll~eq~~L~~lae----------~I~~-----~L~yF~~Le~itr 194 (719)
.+-..++-|..+-+ .+.. .=.||..|+++.+
T Consensus 91 ~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~ 136 (618)
T PF06419_consen 91 ELELKKKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQK 136 (618)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 66666665555432 2222 3579999998865
No 76
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.96 E-value=3.4e+02 Score=29.73 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005012 99 TDLELAMKSETEE--KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFA 176 (719)
Q Consensus 99 ~~~e~~~~~~~~~--~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~la 176 (719)
..++.++.....+ .|..++..|+ .-...-.+++.+.+.++.|...-....+.-..+...++++.+|...|+.-.
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~----~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLE----EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHh
Q 005012 177 EAVQS 181 (719)
Q Consensus 177 e~I~~ 181 (719)
+.+.+
T Consensus 88 ~~l~~ 92 (314)
T PF04111_consen 88 EELDE 92 (314)
T ss_dssp HHHHH
T ss_pred HHHHH
No 77
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=20.84 E-value=1e+03 Score=25.29 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=34.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCC
Q 005012 148 HHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYS 198 (719)
Q Consensus 148 ~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~itr~L~s 198 (719)
.-.|..++-.++.. ..+++++..++.++..+|.|.-+-+...|++.-
T Consensus 165 lfd~~keni~l~lE----~~yre~~~~v~~E~K~~lDy~v~~e~~~rr~eq 211 (247)
T KOG3976|consen 165 LFDVSKENIALQLE----ATYREQLVRVAKEVKRRLDYWVETEASKRRLEQ 211 (247)
T ss_pred hhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333 246788899999999999999999999998754
No 78
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.79 E-value=9.6e+02 Score=24.93 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005012 109 TEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (719)
Q Consensus 109 ~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~ 182 (719)
.+.+|...-..|......+...-..++.+-..+.+|......|.++-+++....++.-.....++.-...+..+
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~ 184 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEK 184 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555666666666666666666666665555554444444444333333
No 79
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.74 E-value=9.8e+02 Score=25.01 Aligned_cols=7 Identities=0% Similarity=0.083 Sum_probs=2.8
Q ss_pred CCCCcCh
Q 005012 225 NPQYAES 231 (719)
Q Consensus 225 hp~fkda 231 (719)
.++.-.+
T Consensus 142 ~~dv~~~ 148 (251)
T PF11932_consen 142 DADVSLA 148 (251)
T ss_pred ccCCCHH
Confidence 3344444
No 80
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.58 E-value=6.2e+02 Score=28.01 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=28.7
Q ss_pred hhhhcChHHHHH-HHHHHHHHHhhhcH-HHHH----HHHHHHHHHHHHHHHHH
Q 005012 85 EAVLVNTNQFYN-WFTDLELAMKSETE-EKYR----HYVNTLMGRIQTCDDIL 131 (719)
Q Consensus 85 ~~~i~~~~~F~~-W~~~~e~~~~~~~~-~~y~----~y~~~L~~~~~~~d~ll 131 (719)
..++.+..+|++ |....|....+.-. ++|. ..++..-..+.+.+.+.
T Consensus 224 g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe~~ 276 (320)
T TIGR01834 224 GKPVKTAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQEIV 276 (320)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999 88888776554433 2343 34444444444555544
No 81
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=20.34 E-value=1e+03 Score=28.63 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhccCCchhhHHhHHHHHHHHHHHHHHhhchh----CCCCccChhchh--
Q 005012 314 YVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHF----FPSSSEDISSLA-- 387 (719)
Q Consensus 314 y~slL~dc~~~Yf~~R~~LL~p~i~~~l~e~~~~~~l~~l~r~~~~~l~~~C~dE~~Lf~~F----F~~~~~~~~~l~-- 387 (719)
+..-+..+...+...+..|+.|-+.... ..|.+..+.|+.++. |....+..- .|.++..+..|.
T Consensus 222 ~~~~~~~~~~~~~~~e~~L~~p~~~~~~---------~~F~~~~~~wL~~~~-~~~~~~~~~~~~~~Plp~~~p~~f~~l 291 (629)
T PF10408_consen 222 LKEQLDKLMSEKLSLEAVLLDPDFLSRC---------LQFYNFVAQWLLRLA-DPSNQYPENKPPKLPLPEEPPPQFAYL 291 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-HHHHHHH---------HHHHHHHHHHHHHHH-STT--TTS-S---S-SS----TTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHH---------HHHHHHHHHHHHHHh-cccccccccCCcCCCCCCCCChHHHhC
Confidence 3444666677777777778877554333 345688889999887 222222210 111111112232
Q ss_pred --hhHHHHHHHHHHhh----cccccccCCHHHHHHHHHHHHH
Q 005012 388 --PLIDPLSTFLYDIL----RPKLIHETNVDLLCELVDILKV 423 (719)
Q Consensus 388 --~~le~Lc~~LYD~l----Rp~Ii~e~~L~~Lcel~~iL~~ 423 (719)
-++|.+++.+.=.. .|.++....++.++..|.++-.
T Consensus 292 PE~~iedi~d~~~f~~~~~~~~~~l~~~~~~~l~~f~i~fm~ 333 (629)
T PF10408_consen 292 PEFFIEDIVDFLLFLRRFNNSPDLLSSQDLDELVTFCITFMG 333 (629)
T ss_dssp BTHHHHHHHHHHHHHTTSTT-TTTT-T-THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCChhhhhhhhHHHHHHHHHHHhC
Confidence 26888888886666 6888999999999999988765
No 82
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.19 E-value=3.6e+02 Score=21.05 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005012 145 QLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (719)
Q Consensus 145 ~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L 183 (719)
..+|...-..=.+|....+.|..|...|......+..+|
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444566666777777776666666655554
Done!