Query 005012
Match_columns 719
No_of_seqs 160 out of 207
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b1e_A Exocyst complex compone 96.2 1.2 4.3E-05 50.7 26.2 182 172-379 5-205 (564)
2 2pft_A Exocytosis protein; hel 95.8 3.7 0.00013 46.8 28.8 138 182-337 5-149 (571)
3 1u4q_A Spectrin alpha chain, b 76.3 16 0.00053 37.5 11.3 17 91-107 118-134 (322)
4 3vmx_A Voltage-gated hydrogen 60.1 35 0.0012 26.0 6.9 40 138-177 3-42 (48)
5 1s35_A Beta-I spectrin, spectr 51.9 1.6E+02 0.0055 27.8 18.2 19 90-108 8-26 (214)
6 3fb2_A Spectrin alpha chain, b 50.3 89 0.003 30.1 10.4 19 89-107 20-38 (218)
7 1u4q_A Spectrin alpha chain, b 47.3 2.3E+02 0.008 28.4 14.3 19 90-108 11-29 (322)
8 1u5p_A Spectrin alpha chain, b 46.6 56 0.0019 31.2 8.3 19 90-108 11-29 (216)
9 3uul_A Utrophin; spectrin repe 46.0 1.4E+02 0.0047 25.3 11.4 17 91-107 11-27 (118)
10 1cun_A Protein (alpha spectrin 41.0 2.3E+02 0.0079 26.5 15.5 17 91-107 9-25 (213)
11 3uun_A Dystrophin; triple heli 34.6 2.1E+02 0.0071 24.1 10.2 18 90-107 10-27 (119)
12 2xs1_A Programmed cell death 6 33.6 1.9E+02 0.0066 33.5 11.4 82 112-197 613-694 (704)
13 1ez3_A Syntaxin-1A; three heli 30.9 1.5E+02 0.0051 26.0 7.9 62 123-184 10-71 (127)
14 2cly_A ATP synthase B chain, m 28.3 4.4E+02 0.015 26.0 11.4 31 167-197 139-169 (214)
15 2ca5_A MXIH; transport protein 23.9 3.3E+02 0.011 23.0 7.9 51 207-261 22-72 (85)
16 2jqq_A Conserved oligomeric go 23.7 5.2E+02 0.018 25.2 12.0 173 101-317 16-193 (204)
17 3ol1_A Vimentin; structural ge 23.5 3.9E+02 0.013 23.7 11.3 77 111-187 16-103 (119)
18 3l39_A Putative PHOU-like phos 22.8 5.4E+02 0.018 25.0 11.5 54 162-224 58-112 (227)
19 3bas_A Myosin heavy chain, str 22.7 3.4E+02 0.012 22.8 11.5 29 155-183 58-86 (89)
20 3c3f_A Alpha/beta peptide with 22.0 1.2E+02 0.0042 21.2 4.0 30 154-183 2-31 (34)
21 2oxj_A Hybrid alpha/beta pepti 21.8 1.3E+02 0.0043 21.2 4.1 30 154-183 2-31 (34)
22 1cun_A Protein (alpha spectrin 21.2 5E+02 0.017 24.1 10.6 11 95-105 119-129 (213)
23 3lbx_B Beta-I spectrin, spectr 20.6 2.8E+02 0.0094 25.9 8.0 43 90-132 12-65 (185)
No 1
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=96.16 E-value=1.2 Score=50.70 Aligned_cols=182 Identities=16% Similarity=0.146 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhC-CCCCccCCccHHHHHHHHHHHHHHhhhC----CCCcChHHHHHHHHHHHHHHH
Q 005012 172 LIEFAEAVQSKLKYFDELENIAASFY-SPNMNVGNGNFFHLLKRLDECILYVEGN----PQYAESSVYLLKFRQLQSRAL 246 (719)
Q Consensus 172 L~~lae~I~~~L~yF~~Le~itr~L~-sp~~~V~~~~F~~~L~~LD~ci~Fl~~h----p~fkda~~Y~~rfkqcltRAl 246 (719)
++..-+.|.+-+.||+.....-..+. +|. .++-+.|...|.+|+++++||+.| +++|+.+-=+.+++.++.+++
T Consensus 5 Id~~l~~i~~v~~~~~~~~~~e~iI~~Gp~-~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~~g~ 83 (564)
T 2b1e_A 5 IESTLNSVASVKDLANEASKYEIILQKGIN-QVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSE 83 (564)
T ss_dssp ---CCGGGCCHHHHHHHHHHHHHHHHTCHH-HHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHH
Confidence 33444455566666665555444443 343 367789999999999999999874 478888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHHHHHHHHHHH
Q 005012 247 GMIRSHVLSVLKSASSQVQ--AAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKL 324 (719)
Q Consensus 247 ~LIr~~~~~~L~~~~~~V~--~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~ 324 (719)
.-+..+|.+.|+. +.-+. .-+..... -+.++ .+....++.+...+.... .-.+|.+.
T Consensus 84 ~~L~~~F~~lL~~-s~p~~p~~~i~k~~p-~p~l~------------~~~l~~L~~Ia~~m~~~g-------~~~~~~~i 142 (564)
T 2b1e_A 84 AQLRVYFISILNS-IKPFDPQINITKKMP-FPYYE------------DQQLGALSWILDYFHGNS-------EGSIIQDI 142 (564)
T ss_dssp HHHHHHHHHHHTT-SCCCCHHHHHHHTCC-CCCCC------------HHHHHHHHHHHHHHHHTT-------CHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHhhccCCC-CCCCC------------HHHHHHHHHHHHHHHhcC-------CchHHHHH
Confidence 9999999988874 11000 00111000 00000 122335555555544432 13579999
Q ss_pred HHHHHhhhhhHHHHHHHHhHhc------c------CCchhhHHhHHHHHHHHHHHHHHhhchhCCCC
Q 005012 325 YCEQRLSLVKGIVQQRISEFSK------K------ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSS 379 (719)
Q Consensus 325 Yf~~R~~LL~p~i~~~l~e~~~------~------~~l~~l~r~~~~~l~~~C~dE~~Lf~~FF~~~ 379 (719)
|.+.|...|...+. .+.. + +....-+..-..-+..+.+.|+.|..+.|+..
T Consensus 143 Y~~~R~~~l~~sL~----~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~~l~~~E~~L~~~vf~~~ 205 (564)
T 2b1e_A 143 LVGERSKLILKCMA----FLEPFAKEISTAKNAPYEKGSSGMNSYTEALLGFIANEKSLVDDLYSQY 205 (564)
T ss_dssp HHHHHHHHHHHHHT----TTSTTCC------------CCSTHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHH----HhhhhccccccccCCchhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999776555432 2210 0 00111223333344667889999999999874
No 2
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=95.78 E-value=3.7 Score=46.79 Aligned_cols=138 Identities=12% Similarity=0.172 Sum_probs=81.7
Q ss_pred cccchhhHHHHHHhhC-CCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 182 KLKYFDELENIAASFY-SPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSA 260 (719)
Q Consensus 182 ~L~yF~~Le~itr~L~-sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~ 260 (719)
-+.||+.....-+.+. .|. .+-+.|+..+++|.+.+.||..|+- ++ ..+.|.+.++..||.-+...|...|..-
T Consensus 5 v~~~~d~~~~~e~~i~~gp~--~~l~~yL~av~~l~~a~~~~~~~~~--~s-~~l~~~~~Ll~~a~~~Le~eF~~lL~~~ 79 (571)
T 2pft_A 5 VISYYHVASDTEKIIREGPT--GRLEEYLGSMAKIQKAVEYFQDNSP--DS-PELNKVKLLFERGKESLESEFRSLMTRH 79 (571)
T ss_dssp TSTHHHHHHHHHHHHHHCCT--TCHHHHHHHHHHHHHHHHHHHHHST--TC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchhhhhhhhcCcH--hhHHHHHHHHHHHHHHHHHHHhcCC--Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666554433332 454 5678999999999999999998542 22 2489999999999999999999988874
Q ss_pred HHH-----HHHHHHhcCCCCCCCCcchhhhhhHHHH-HHHHHhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhhhh
Q 005012 261 SSQ-----VQAAIRSSGGSKTSVSEGVEASLIYVRF-KAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVK 334 (719)
Q Consensus 261 ~~~-----V~~~l~~~~~~~~~~s~~~~~aLlY~kF-~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~ 334 (719)
+.- +...+..... . .+.+. .. +..+ ....+.++.+...+..+.. ..+|.+.|...|...|.
T Consensus 80 ~~~~~p~~ll~~~~~~~~-~--~~~~~--~~-~~~~~~~~~~~L~~Ia~~m~~~g~-------~~~~~~~Y~~~R~~~l~ 146 (571)
T 2pft_A 80 SKVVSPVLLLDLISADDE-L--EVQED--VV-LEHLPESVLRDVVRISRWLVEYGR-------NQDFMNVYYQIRSSQLD 146 (571)
T ss_dssp CCCCCHHHHHHHHHHTCC-C--C-----------SSCHHHHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHHHHHH
T ss_pred CcCCChHHHHhccccccc-c--Ccccc--cc-ccCCCHHHHHHHHHHHHHHHHcCC-------chHHHHHHHHHHHHHHH
Confidence 421 1111211100 0 00000 00 0001 1222344544444333321 25799999999988877
Q ss_pred HHH
Q 005012 335 GIV 337 (719)
Q Consensus 335 p~i 337 (719)
..+
T Consensus 147 ~sL 149 (571)
T 2pft_A 147 RSI 149 (571)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 3
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=76.33 E-value=16 Score=37.48 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHhh
Q 005012 91 TNQFYNWFTDLELAMKS 107 (719)
Q Consensus 91 ~~~F~~W~~~~e~~~~~ 107 (719)
..+|..|....+..+.+
T Consensus 118 ~~~~~~Wl~e~e~~~~~ 134 (322)
T 1u4q_A 118 MDDEESWIKEKKLLVSS 134 (322)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 45567788887766544
No 4
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=60.15 E-value=35 Score=26.00 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005012 138 LDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAE 177 (719)
Q Consensus 138 l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae 177 (719)
...+..|...+..+..+...|...|..+-.|-.||..+-.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999888887654
No 5
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=51.93 E-value=1.6e+02 Score=27.83 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHHHHhhh
Q 005012 90 NTNQFYNWFTDLELAMKSE 108 (719)
Q Consensus 90 ~~~~F~~W~~~~e~~~~~~ 108 (719)
...+|..|....+..+.+.
T Consensus 8 ~~~~l~~Wl~~~~~~l~~~ 26 (214)
T 1s35_A 8 DLDDFQAWLSITQKAVASE 26 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4678899999999888654
No 6
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=50.28 E-value=89 Score=30.06 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=15.5
Q ss_pred cChHHHHHHHHHHHHHHhh
Q 005012 89 VNTNQFYNWFTDLELAMKS 107 (719)
Q Consensus 89 ~~~~~F~~W~~~~e~~~~~ 107 (719)
....++..|....+..+.+
T Consensus 20 ~~~~~l~~Wl~~~~~~l~~ 38 (218)
T 3fb2_A 20 SDFRDLMSWINGIRGLVSS 38 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3467888999999999864
No 7
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=47.29 E-value=2.3e+02 Score=28.40 Aligned_cols=19 Identities=26% Similarity=0.601 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHHHHhhh
Q 005012 90 NTNQFYNWFTDLELAMKSE 108 (719)
Q Consensus 90 ~~~~F~~W~~~~e~~~~~~ 108 (719)
...++..|....+..+.+.
T Consensus 11 ~~~~l~~Wl~~~e~~l~~~ 29 (322)
T 1u4q_A 11 GIKDFDFWLSEVEALLASE 29 (322)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3577888999999988764
No 8
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=46.59 E-value=56 Score=31.21 Aligned_cols=19 Identities=26% Similarity=0.601 Sum_probs=14.9
Q ss_pred ChHHHHHHHHHHHHHHhhh
Q 005012 90 NTNQFYNWFTDLELAMKSE 108 (719)
Q Consensus 90 ~~~~F~~W~~~~e~~~~~~ 108 (719)
+..++..|....+..+.+.
T Consensus 11 ~~~~l~~Wl~~~e~~l~~~ 29 (216)
T 1u5p_A 11 GIKDFDFWLSEVEALLASE 29 (216)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 3567788999999988764
No 9
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=46.02 E-value=1.4e+02 Score=25.35 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHhh
Q 005012 91 TNQFYNWFTDLELAMKS 107 (719)
Q Consensus 91 ~~~F~~W~~~~e~~~~~ 107 (719)
..++..|..+.|..+.+
T Consensus 11 l~el~~WL~e~e~~l~~ 27 (118)
T 3uul_A 11 LEEVLTWLLSAEDTFQE 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 57889999999988765
No 10
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=41.04 E-value=2.3e+02 Score=26.53 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHhh
Q 005012 91 TNQFYNWFTDLELAMKS 107 (719)
Q Consensus 91 ~~~F~~W~~~~e~~~~~ 107 (719)
..++..|....+..+.+
T Consensus 9 ~~~~~~Wl~e~e~~l~~ 25 (213)
T 1cun_A 9 MDDEESWIKEKKLLVSS 25 (213)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHhcC
Confidence 45667788887776554
No 11
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=34.55 E-value=2.1e+02 Score=24.09 Aligned_cols=18 Identities=11% Similarity=0.405 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHHHHhh
Q 005012 90 NTNQFYNWFTDLELAMKS 107 (719)
Q Consensus 90 ~~~~F~~W~~~~e~~~~~ 107 (719)
...++..|....|..+.+
T Consensus 10 ~l~el~~WL~~~e~~l~~ 27 (119)
T 3uun_A 10 ALEEVLSWLLSAEDTLQA 27 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 357888999999988765
No 12
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=33.60 E-value=1.9e+02 Score=33.48 Aligned_cols=82 Identities=12% Similarity=0.316 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 005012 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (719)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~ 191 (719)
+|..+.+.+......=+.|+.++...-+.|..+... ...+..=+..+.+|-.--....++...+.+-++||+.|..
T Consensus 613 ~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~----~~~~~~re~~~~~l~~ay~~y~el~~~l~eG~~FY~~L~~ 688 (704)
T 2xs1_A 613 VYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQS----NNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTE 688 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 588888888888888888888888777777655321 1112222344444444445566899999999999999998
Q ss_pred HHHhhC
Q 005012 192 IAASFY 197 (719)
Q Consensus 192 itr~L~ 197 (719)
+..++.
T Consensus 689 ~~~~~~ 694 (704)
T 2xs1_A 689 ILVRFQ 694 (704)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877763
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.89 E-value=1.5e+02 Score=26.02 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005012 123 RIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (719)
Q Consensus 123 ~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L~ 184 (719)
..+.++.|-..++.+-..+++|...+..+-..++......++|=.--......+..|..+|+
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk 71 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLK 71 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444433222222222222333344555555544
No 14
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=28.29 E-value=4.4e+02 Score=25.99 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhhC
Q 005012 167 IEKQRLIEFAEAVQSKLKYFDELENIAASFY 197 (719)
Q Consensus 167 ~eq~~L~~lae~I~~~L~yF~~Le~itr~L~ 197 (719)
...+++..++.++..+|.|--++|...|+..
T Consensus 139 ~yre~~~~v~~EvK~rLDy~v~~e~~~r~~e 169 (214)
T 2cly_A 139 TYRERLHRVYREVKNRLDYHISVQNMMRQKE 169 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999864
No 15
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=23.88 E-value=3.3e+02 Score=23.04 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 207 NFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSAS 261 (719)
Q Consensus 207 ~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~ 261 (719)
.-..+-+.+..+++=|+.+| +-+..+++|++.+.. .+++|+.-.+++|..-
T Consensus 22 ga~~~~~~v~~Ai~~L~~~P---snPa~LAeyQ~kl~e-ysl~rNaqSttiKa~K 72 (85)
T 2ca5_A 22 GTQTLQGELTLALDKLAKNP---SNPQLLAEYQSKLSE-YTLYRNAQSNTVKVIK 72 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44678899999999999999 789999999998776 6899999888877644
No 16
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=23.75 E-value=5.2e+02 Score=25.20 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=80.0
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 101 LELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQ 180 (719)
Q Consensus 101 ~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I~ 180 (719)
++..+.++....|-.|. .-|+..-++-++++..+.....+-.++.+|-..|- + ..+....|.|.
T Consensus 16 m~~~LLe~i~~~YddY~-------~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~qL~---~------~~i~~Tre~v~ 79 (204)
T 2jqq_A 16 MVQTLLEQIRSNYDDYL-------TFSNTYTDEENETLINLEKTQSDLQKFMTQLDHLI---K------DDISNTQEIIK 79 (204)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHHH---H------HSCSTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHH-------HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---h------hhhhhHHHHHH
Confidence 34444555555555443 35555555555666666666555555444433332 2 23446678889
Q ss_pred hcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 181 SKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSA 260 (719)
Q Consensus 181 ~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~ 260 (719)
..+.|-..||.|...|+.- +.=.+-..+..+|-.|+.=|..... -|-+....=-+| |-++
T Consensus 80 d~l~YLkkLD~l~~~Lq~h---~~Lse~l~l~kqLs~sLh~mC~~~p-ld~eLc~~l~~q----------------L~~L 139 (204)
T 2jqq_A 80 DVLEYLKKLDEIYGSLRNH---SQLTEALSLGKRLSKSLHEMCGIEP-LEEEICSGLIEQ----------------LYKL 139 (204)
T ss_dssp HHHHHHHHHHHHHHTCSSS---SHHHHHHHHHHHHHHHHHHHHTSSC-CCHHHHHHHHHH----------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHHHH----------------HHHH
Confidence 9999999999999999773 3344566677788888888877744 454443322221 2111
Q ss_pred HHHH---HHHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhh--ChhHHHHH
Q 005012 261 SSQV---QAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRS--SKKEYVQI 317 (719)
Q Consensus 261 ~~~V---~~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~--~~~Ey~sl 317 (719)
..-+ ...+.+ .+..-..-+=+.|..++..++.-+.-+-.|| .+.+|..+
T Consensus 140 ~~~~~~ll~~l~d--------l~Sp~l~h~RN~yq~i~q~Fqi~lk~LtdkClE~p~~~~~l 193 (204)
T 2jqq_A 140 ITASRRILESCAD--------SNSPYIHHLRNDYQDLLQEFQISLKILTEKCLENPSSLQNL 193 (204)
T ss_dssp HHHHHHHHHHHCS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred HHHHHHHHHHHHh--------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhH
Confidence 1111 112221 1112234556778888888888888887777 33455543
No 17
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.51 E-value=3.9e+02 Score=23.69 Aligned_cols=77 Identities=10% Similarity=0.196 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005012 111 EKYRHYVNTLMGRIQT----CDDILRQVDGTLDLFNELQLQHH-------AVATKTKTLHDACDRLVIEKQRLIEFAEAV 179 (719)
Q Consensus 111 ~~y~~y~~~L~~~~~~----~d~ll~~~~~~l~~l~~L~~~~~-------~V~~kT~~l~~~ce~Ll~eq~~L~~lae~I 179 (719)
..|..|++.|...+.. -..+.-+++++...++++...|. .|+.....|+...+..---+..|+.-.+.+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 3455555555444332 23455566777777777766654 455555556666666655666677777777
Q ss_pred Hhcccchh
Q 005012 180 QSKLKYFD 187 (719)
Q Consensus 180 ~~~L~yF~ 187 (719)
.+-|.|..
T Consensus 96 ~eEl~FLK 103 (119)
T 3ol1_A 96 QEEIAFLK 103 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666654
No 18
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=22.75 E-value=5.4e+02 Score=25.04 Aligned_cols=54 Identities=7% Similarity=0.063 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCC-ccCCccHHHHHHHHHHHHHHhhh
Q 005012 162 CDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNM-NVGNGNFFHLLKRLDECILYVEG 224 (719)
Q Consensus 162 ce~Ll~eq~~L~~lae~I~~~L~yF~~Le~itr~L~sp~~-~V~~~~F~~~L~~LD~ci~Fl~~ 224 (719)
.+.+..+-..++.-|+.|... |...|+..-+ -+.++++..+...+|+.+++++.
T Consensus 58 ~~~~~~~I~~lE~~aD~i~~~---------i~~~L~~~fitP~dReDI~~L~~~lDdI~D~ie~ 112 (227)
T 3l39_A 58 RADYYKQIKDMEREGDRLTHL---------IFDELSTTFITPFDREDIHDLASCMDDVIDGINS 112 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666667666543 4455554333 25788999999999999999974
No 19
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=22.67 E-value=3.4e+02 Score=22.78 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005012 155 TKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (719)
Q Consensus 155 T~~l~~~ce~Ll~eq~~L~~lae~I~~~L 183 (719)
.....+.|++|...+..|+....++..+|
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66678889999999999988888887765
No 20
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.03 E-value=1.2e+02 Score=21.24 Aligned_cols=30 Identities=3% Similarity=0.041 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005012 154 KTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (719)
Q Consensus 154 kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L 183 (719)
.-+.|.+.+|.|+.+...|+.-..-+.+-|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 356788899999999998887766665543
No 21
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.75 E-value=1.3e+02 Score=21.20 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005012 154 KTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (719)
Q Consensus 154 kT~~l~~~ce~Ll~eq~~L~~lae~I~~~L 183 (719)
.-+.|.+.+|.|+.+...|+.-.+.+++-|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 357788999999999998887777666544
No 22
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=21.15 E-value=5e+02 Score=24.08 Aligned_cols=11 Identities=9% Similarity=0.317 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 005012 95 YNWFTDLELAM 105 (719)
Q Consensus 95 ~~W~~~~e~~~ 105 (719)
..|..+.+..+
T Consensus 119 ~~Wl~~~e~~l 129 (213)
T 1cun_A 119 EAWINEKMTLV 129 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 23
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=20.56 E-value=2.8e+02 Score=25.85 Aligned_cols=43 Identities=7% Similarity=0.174 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHHHhhhc-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 005012 90 NTNQFYNWFTDLELAMKSET-----------EEKYRHYVNTLMGRIQTCDDILR 132 (719)
Q Consensus 90 ~~~~F~~W~~~~e~~~~~~~-----------~~~y~~y~~~L~~~~~~~d~ll~ 132 (719)
...++..|....+..+.+.. ..++..+...+..+...+..+.+
T Consensus 12 ~~~dl~~Wl~~~~~~l~~~e~~~d~~~~e~ll~~H~~~~~ei~~~~~~~~~l~~ 65 (185)
T 3lbx_B 12 MARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLE 65 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC--CCSSSCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45788899999998877532 24556677777776666666653
Done!