Query 005013
Match_columns 719
No_of_seqs 278 out of 1748
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 99.8 6.9E-21 2.4E-25 171.8 7.2 100 4-108 9-108 (111)
2 3v43_A Histone acetyltransfera 99.8 1.1E-20 3.9E-25 171.5 7.0 102 1-102 7-110 (112)
3 2kwj_A Zinc finger protein DPF 99.8 4.5E-21 1.5E-25 174.8 4.1 102 1-102 3-106 (114)
4 2ysm_A Myeloid/lymphoid or mix 99.5 1.1E-14 3.7E-19 131.4 6.4 96 56-196 9-104 (111)
5 3v43_A Histone acetyltransfera 99.4 2E-13 6.8E-18 123.9 4.9 88 64-195 21-111 (112)
6 2kwj_A Zinc finger protein DPF 99.3 2.6E-13 9E-18 123.6 3.7 87 64-195 18-107 (114)
7 4gne_A Histone-lysine N-methyl 99.3 3.2E-12 1.1E-16 116.2 6.4 81 3-98 16-98 (107)
8 2e6s_A E3 ubiquitin-protein li 99.3 6.3E-12 2.2E-16 108.0 6.7 71 12-102 4-75 (77)
9 3asl_A E3 ubiquitin-protein li 99.2 6.6E-12 2.2E-16 105.9 5.0 56 47-103 12-68 (70)
10 3shb_A E3 ubiquitin-protein li 99.2 1.3E-11 4.3E-16 106.2 4.9 55 47-102 20-75 (77)
11 2e6r_A Jumonji/ARID domain-con 99.0 6.1E-11 2.1E-15 104.7 2.9 58 46-103 8-65 (92)
12 4gne_A Histone-lysine N-methyl 99.0 7E-10 2.4E-14 100.9 7.2 68 56-172 17-86 (107)
13 1f62_A Transcription factor WS 99.0 2.1E-10 7.3E-15 90.2 3.3 48 56-103 2-49 (51)
14 3ask_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 114.4 4.8 55 47-102 168-223 (226)
15 3lqh_A Histone-lysine N-methyl 98.9 6.7E-10 2.3E-14 109.3 3.1 63 136-198 1-65 (183)
16 1fp0_A KAP-1 corepressor; PHD 98.9 2.6E-09 8.8E-14 94.2 6.1 57 45-104 16-72 (88)
17 1mm2_A MI2-beta; PHD, zinc fin 98.8 3.3E-09 1.1E-13 87.0 4.2 45 56-103 11-55 (61)
18 2l5u_A Chromodomain-helicase-D 98.7 4.9E-09 1.7E-13 86.0 3.9 49 52-103 9-57 (61)
19 2lri_C Autoimmune regulator; Z 98.7 3.3E-09 1.1E-13 88.7 2.9 45 56-103 14-58 (66)
20 2yql_A PHD finger protein 21A; 98.7 3.2E-09 1.1E-13 85.5 2.4 44 56-102 11-54 (56)
21 1xwh_A Autoimmune regulator; P 98.7 3.6E-09 1.2E-13 87.9 2.3 45 56-103 10-54 (66)
22 2puy_A PHD finger protein 21A; 98.7 3.9E-09 1.3E-13 85.9 2.3 45 56-103 7-51 (60)
23 4bbq_A Lysine-specific demethy 98.7 4.9E-09 1.7E-13 94.8 3.1 109 53-197 6-115 (117)
24 1wev_A Riken cDNA 1110020M19; 98.6 1.1E-08 3.8E-13 89.6 2.3 49 56-104 18-72 (88)
25 2vpb_A Hpygo1, pygopus homolog 98.6 7E-09 2.4E-13 86.4 -0.1 54 139-194 10-64 (65)
26 2yt5_A Metal-response element- 98.6 1.2E-08 4E-13 84.1 1.2 48 56-103 8-60 (66)
27 1we9_A PHD finger family prote 98.5 2.5E-08 8.6E-13 81.7 2.3 54 136-196 5-58 (64)
28 2k16_A Transcription initiatio 98.5 3.2E-08 1.1E-12 83.5 2.9 48 56-103 20-67 (75)
29 3o36_A Transcription intermedi 98.5 5.2E-08 1.8E-12 94.7 4.3 46 56-104 6-51 (184)
30 1f62_A Transcription factor WS 98.5 7.3E-08 2.5E-12 75.7 4.2 37 16-55 12-48 (51)
31 2ku3_A Bromodomain-containing 98.5 2.2E-08 7.5E-13 84.8 1.0 45 56-102 18-64 (71)
32 3u5n_A E3 ubiquitin-protein li 98.5 5.5E-08 1.9E-12 96.3 3.8 47 56-105 9-55 (207)
33 2xb1_A Pygopus homolog 2, B-ce 98.5 3.5E-08 1.2E-12 89.0 1.9 56 139-196 5-61 (105)
34 2l43_A N-teminal domain from h 98.5 2.6E-08 8.8E-13 87.4 0.5 46 56-103 27-74 (88)
35 1fp0_A KAP-1 corepressor; PHD 98.4 1.8E-07 6E-12 82.6 5.0 51 3-61 26-76 (88)
36 2ro1_A Transcription intermedi 98.4 1.1E-07 3.9E-12 93.4 4.2 45 56-103 4-48 (189)
37 1mm2_A MI2-beta; PHD, zinc fin 98.4 1.4E-07 4.9E-12 77.2 3.3 45 3-55 10-54 (61)
38 2lri_C Autoimmune regulator; Z 98.4 1.8E-07 6.1E-12 78.2 3.8 44 4-55 14-57 (66)
39 2l5u_A Chromodomain-helicase-D 98.4 1.8E-07 6.3E-12 76.6 3.6 44 4-55 13-56 (61)
40 2yt5_A Metal-response element- 98.3 1E-07 3.5E-12 78.5 1.7 52 4-55 8-59 (66)
41 1wev_A Riken cDNA 1110020M19; 98.3 1.2E-07 4.3E-12 82.9 2.1 52 4-55 18-70 (88)
42 2puy_A PHD finger protein 21A; 98.3 1.7E-07 5.8E-12 76.2 2.5 44 4-55 7-50 (60)
43 1xwh_A Autoimmune regulator; P 98.3 1.6E-07 5.4E-12 77.9 2.2 44 4-55 10-53 (66)
44 2ku3_A Bromodomain-containing 98.3 2.4E-07 8.2E-12 78.4 2.8 48 3-55 17-64 (71)
45 2lv9_A Histone-lysine N-methyl 98.3 4E-07 1.4E-11 81.1 4.3 43 59-102 32-74 (98)
46 2yql_A PHD finger protein 21A; 98.3 1.8E-07 6.2E-12 75.2 1.9 44 4-55 11-54 (56)
47 1wep_A PHF8; structural genomi 98.3 2.5E-07 8.6E-12 79.1 2.8 53 137-197 12-64 (79)
48 2kgg_A Histone demethylase jar 98.3 5.7E-07 2E-11 71.4 4.6 47 140-194 5-52 (52)
49 2e6s_A E3 ubiquitin-protein li 98.3 5.2E-07 1.8E-11 77.5 4.2 47 4-55 28-75 (77)
50 3asl_A E3 ubiquitin-protein li 98.2 5.6E-07 1.9E-11 75.8 4.0 47 4-55 20-67 (70)
51 2l43_A N-teminal domain from h 98.2 3.1E-07 1E-11 80.6 2.3 46 4-54 27-72 (88)
52 2lbm_A Transcriptional regulat 98.2 1.1E-07 3.9E-12 90.3 -1.0 80 16-102 11-115 (142)
53 3o36_A Transcription intermedi 98.2 6.8E-07 2.3E-11 86.8 3.9 45 3-55 5-49 (184)
54 2e6r_A Jumonji/ARID domain-con 98.2 4.2E-07 1.4E-11 80.3 1.7 55 3-63 17-71 (92)
55 3u5n_A E3 ubiquitin-protein li 98.1 7.7E-07 2.6E-11 88.1 3.2 45 3-55 8-52 (207)
56 1wem_A Death associated transc 98.1 2.1E-07 7.2E-12 78.8 -0.8 54 138-196 17-70 (76)
57 3shb_A E3 ubiquitin-protein li 98.1 1.2E-06 4.2E-11 75.2 3.5 47 4-55 28-75 (77)
58 2k16_A Transcription initiatio 98.1 1.7E-06 5.6E-11 73.0 4.1 36 17-55 31-66 (75)
59 1wen_A Inhibitor of growth fam 98.1 1.9E-06 6.7E-11 72.8 4.2 48 137-197 16-66 (71)
60 1weu_A Inhibitor of growth fam 98.1 2E-06 6.7E-11 76.3 4.1 48 137-197 36-86 (91)
61 4bbq_A Lysine-specific demethy 98.1 8.3E-07 2.9E-11 80.2 1.6 93 2-103 7-113 (117)
62 2ro1_A Transcription intermedi 98.1 1.4E-06 4.8E-11 85.6 3.3 45 3-55 3-47 (189)
63 3o70_A PHD finger protein 13; 98.1 7.1E-07 2.4E-11 74.9 1.0 49 137-196 19-67 (68)
64 1wen_A Inhibitor of growth fam 98.0 2.9E-06 1E-10 71.7 3.9 44 56-103 18-64 (71)
65 2lv9_A Histone-lysine N-methyl 98.0 3E-06 1E-10 75.5 3.8 43 4-55 32-74 (98)
66 1wee_A PHD finger family prote 98.0 1.5E-06 5.1E-11 73.1 1.5 50 138-196 17-66 (72)
67 2g6q_A Inhibitor of growth pro 98.0 9.7E-07 3.3E-11 72.8 0.1 47 137-196 11-60 (62)
68 1weu_A Inhibitor of growth fam 97.9 4.7E-06 1.6E-10 73.8 4.0 44 56-103 38-84 (91)
69 2ri7_A Nucleosome-remodeling f 97.9 1.1E-06 3.6E-11 84.4 -0.3 53 136-196 7-59 (174)
70 3c6w_A P28ING5, inhibitor of g 97.9 1.2E-06 4.1E-11 71.6 -0.0 46 137-195 9-57 (59)
71 2vnf_A ING 4, P29ING4, inhibit 97.9 2.1E-06 7.3E-11 70.2 0.9 44 56-103 12-58 (60)
72 3kqi_A GRC5, PHD finger protei 97.9 1.2E-06 4.2E-11 74.2 -0.7 50 138-195 11-60 (75)
73 3c6w_A P28ING5, inhibitor of g 97.9 2.8E-06 9.5E-11 69.4 0.9 43 56-102 11-56 (59)
74 3o7a_A PHD finger protein 13 v 97.8 3.9E-06 1.3E-10 66.5 1.2 46 139-195 6-51 (52)
75 2vnf_A ING 4, P29ING4, inhibit 97.8 2.5E-06 8.6E-11 69.8 -0.2 46 137-195 10-58 (60)
76 2rsd_A E3 SUMO-protein ligase 97.8 3.2E-06 1.1E-10 70.5 0.3 51 139-195 12-64 (68)
77 2g6q_A Inhibitor of growth pro 97.8 4.3E-06 1.5E-10 69.0 0.9 44 56-103 13-59 (62)
78 2jmi_A Protein YNG1, ING1 homo 97.8 7.8E-06 2.7E-10 72.3 2.4 43 56-102 28-74 (90)
79 3o70_A PHD finger protein 13; 97.8 9.1E-06 3.1E-10 68.1 2.5 45 56-102 21-65 (68)
80 2jmi_A Protein YNG1, ING1 homo 97.7 7.6E-06 2.6E-10 72.4 1.8 45 137-194 26-74 (90)
81 3ql9_A Transcriptional regulat 97.7 1.6E-06 5.6E-11 81.2 -2.8 44 56-102 59-109 (129)
82 2lbm_A Transcriptional regulat 97.7 8.5E-06 2.9E-10 77.5 1.5 48 3-55 64-115 (142)
83 1we9_A PHD finger family prote 97.7 1.2E-05 4E-10 65.8 1.7 48 56-103 8-57 (64)
84 1wew_A DNA-binding family prot 97.6 6.1E-06 2.1E-10 70.5 -0.5 54 138-196 17-72 (78)
85 1wee_A PHD finger family prote 97.6 1.8E-05 6.1E-10 66.5 2.3 47 56-103 18-65 (72)
86 3ask_A E3 ubiquitin-protein li 97.6 3.7E-05 1.3E-09 78.1 4.7 48 139-195 176-224 (226)
87 2kgg_A Histone demethylase jar 97.5 2.1E-05 7.1E-10 62.4 1.2 47 56-102 4-52 (52)
88 1wep_A PHF8; structural genomi 97.4 3.2E-05 1.1E-09 66.1 1.2 47 56-103 14-62 (79)
89 1wem_A Death associated transc 97.4 1.3E-05 4.5E-10 67.8 -1.4 47 56-103 18-69 (76)
90 1x4i_A Inhibitor of growth pro 97.4 3E-05 1E-09 65.4 0.6 41 60-103 11-54 (70)
91 1x4i_A Inhibitor of growth pro 97.4 1.9E-05 6.4E-10 66.6 -0.9 45 138-195 7-54 (70)
92 3o7a_A PHD finger protein 13 v 97.3 8.5E-05 2.9E-09 58.8 2.7 43 59-102 8-50 (52)
93 3kv5_D JMJC domain-containing 97.3 2.5E-05 8.5E-10 87.0 -0.7 51 137-195 37-87 (488)
94 1wew_A DNA-binding family prot 97.3 6E-05 2.1E-09 64.3 1.2 47 56-103 18-71 (78)
95 2vpb_A Hpygo1, pygopus homolog 97.3 2.2E-05 7.4E-10 65.4 -1.6 47 56-102 10-64 (65)
96 2xb1_A Pygopus homolog 2, B-ce 97.3 5.5E-05 1.9E-09 68.2 0.8 48 56-103 5-60 (105)
97 3kqi_A GRC5, PHD finger protei 97.2 5.1E-05 1.7E-09 64.3 -0.3 45 59-103 14-60 (75)
98 2rsd_A E3 SUMO-protein ligase 97.2 0.00015 5E-09 60.4 2.3 45 59-103 14-64 (68)
99 2ri7_A Nucleosome-remodeling f 97.1 7.8E-05 2.7E-09 71.4 0.2 37 17-55 21-57 (174)
100 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.1 0.00014 4.9E-09 65.2 1.8 42 154-195 1-43 (140)
101 2equ_A PHD finger protein 20-l 97.1 0.00055 1.9E-08 58.5 5.2 58 656-717 9-66 (74)
102 3kv4_A PHD finger protein 8; e 97.0 9E-05 3.1E-09 81.8 -0.7 50 139-196 7-56 (447)
103 3ql9_A Transcriptional regulat 96.9 0.00018 6.3E-09 67.4 1.1 47 4-55 59-109 (129)
104 2ldm_A Uncharacterized protein 96.0 0.00013 4.5E-09 63.5 0.0 54 658-715 8-61 (81)
105 3lqh_A Histone-lysine N-methyl 96.7 0.00027 9.1E-09 69.7 0.4 48 56-103 4-62 (183)
106 2g3r_A Tumor suppressor P53-bi 96.7 0.0011 3.8E-08 61.4 4.4 45 655-700 3-47 (123)
107 3pur_A Lysine-specific demethy 96.6 0.00067 2.3E-08 76.1 2.6 41 150-195 53-93 (528)
108 3p8d_A Medulloblastoma antigen 96.6 0.0021 7.3E-08 54.1 4.7 45 657-703 7-51 (67)
109 3qii_A PHD finger protein 20; 96.5 0.0022 7.5E-08 56.3 4.7 48 654-703 19-66 (85)
110 1wil_A KIAA1045 protein; ring 96.4 0.0012 4.2E-08 57.9 2.4 40 16-55 26-74 (89)
111 3rsn_A SET1/ASH2 histone methy 96.3 0.0016 5.5E-08 64.0 2.9 51 143-197 10-60 (177)
112 1ssf_A Transformation related 95.9 0.0047 1.6E-07 59.4 3.6 46 655-701 7-52 (156)
113 3kv5_D JMJC domain-containing 95.8 0.00096 3.3E-08 74.4 -1.4 47 56-103 39-87 (488)
114 3kv4_A PHD finger protein 8; e 95.6 0.0011 3.7E-08 73.3 -2.3 45 59-103 9-55 (447)
115 1wil_A KIAA1045 protein; ring 95.4 0.0029 9.8E-08 55.6 0.4 46 56-102 17-74 (89)
116 1mhn_A SurviVal motor neuron p 95.4 0.017 5.9E-07 46.5 5.0 47 657-703 4-51 (59)
117 4a4f_A SurviVal of motor neuro 95.2 0.02 6.9E-07 47.0 4.8 47 657-703 9-56 (64)
118 4ap4_A E3 ubiquitin ligase RNF 95.2 0.00098 3.4E-08 59.4 -3.3 90 2-103 10-121 (133)
119 3s6w_A Tudor domain-containing 95.1 0.021 7E-07 45.2 4.3 46 658-703 3-49 (54)
120 1g5v_A SurviVal motor neuron p 94.9 0.027 9.4E-07 49.5 4.8 48 656-703 10-58 (88)
121 3pnw_C Tudor domain-containing 94.7 0.033 1.1E-06 47.5 4.9 60 644-703 5-65 (77)
122 3pur_A Lysine-specific demethy 94.6 0.012 4.2E-07 66.1 2.5 77 17-103 10-93 (528)
123 2d9t_A Tudor domain-containing 94.2 0.046 1.6E-06 46.6 4.7 55 657-713 10-65 (78)
124 1iym_A EL5; ring-H2 finger, ub 92.8 0.059 2E-06 41.3 2.7 44 1-55 7-50 (55)
125 2eqj_A Metal-response element- 92.7 0.15 5.2E-06 42.8 5.2 39 658-697 15-53 (66)
126 3rsn_A SET1/ASH2 histone methy 92.6 0.072 2.5E-06 52.4 3.7 30 59-88 9-39 (177)
127 2ku7_A MLL1 PHD3-CYP33 RRM chi 92.4 0.027 9.1E-07 50.3 0.3 37 18-54 1-41 (140)
128 4ap4_A E3 ubiquitin ligase RNF 91.6 0.0088 3E-07 53.1 -3.8 96 69-196 26-122 (133)
129 2kiz_A E3 ubiquitin-protein li 90.4 0.078 2.7E-06 42.5 1.1 43 1-55 16-58 (69)
130 2d8s_A Cellular modulator of i 90.3 0.086 2.9E-06 45.0 1.3 46 1-55 17-65 (80)
131 1x4j_A Ring finger protein 38; 89.8 0.047 1.6E-06 44.7 -0.7 42 2-55 26-67 (75)
132 2ecl_A Ring-box protein 2; RNF 89.8 0.16 5.6E-06 42.6 2.7 68 115-196 6-73 (81)
133 2l8d_A Lamin-B receptor; DNA b 89.6 0.44 1.5E-05 40.0 5.0 45 658-702 11-55 (66)
134 4hcz_A PHD finger protein 1; p 89.3 0.56 1.9E-05 38.5 5.3 38 659-697 6-43 (58)
135 2dig_A Lamin-B receptor; tudor 88.9 0.49 1.7E-05 39.8 4.8 52 658-711 14-65 (68)
136 2pv0_B DNA (cytosine-5)-methyl 88.6 0.14 4.9E-06 55.7 1.8 66 124-197 70-149 (386)
137 2ct0_A Non-SMC element 1 homol 88.5 0.16 5.6E-06 43.1 1.7 32 19-55 28-59 (74)
138 2ecm_A Ring finger and CHY zin 88.5 0.13 4.3E-06 39.3 1.0 44 1-55 7-50 (55)
139 2l0b_A E3 ubiquitin-protein li 88.4 0.087 3E-06 45.1 -0.1 42 2-55 43-84 (91)
140 2ect_A Ring finger protein 126 88.3 0.19 6.5E-06 41.2 2.0 43 1-55 17-59 (78)
141 1v87_A Deltex protein 2; ring- 88.0 0.16 5.6E-06 44.5 1.5 35 19-55 55-89 (114)
142 2m0o_A PHD finger protein 1; t 88.0 0.45 1.5E-05 41.1 4.1 41 656-697 26-66 (79)
143 3a1b_A DNA (cytosine-5)-methyl 87.6 0.046 1.6E-06 53.0 -2.5 65 124-196 56-134 (159)
144 2ecl_A Ring-box protein 2; RNF 87.6 0.09 3.1E-06 44.3 -0.4 30 19-55 42-71 (81)
145 3h8z_A FragIle X mental retard 87.2 0.62 2.1E-05 43.6 4.9 51 660-713 5-55 (128)
146 3h8z_A FragIle X mental retard 87.2 0.78 2.7E-05 42.9 5.6 53 657-713 61-120 (128)
147 2pv0_B DNA (cytosine-5)-methyl 87.0 0.09 3.1E-06 57.2 -0.9 45 56-103 95-147 (386)
148 2ep4_A Ring finger protein 24; 86.8 0.14 4.7E-06 41.6 0.3 42 2-55 18-59 (74)
149 3dpl_R Ring-box protein 1; ubi 86.6 0.23 7.8E-06 44.5 1.6 30 19-55 67-96 (106)
150 2e5p_A Protein PHF1, PHD finge 85.3 1.2 4.3E-05 37.5 5.2 40 658-698 11-50 (68)
151 2xk0_A Polycomb protein PCL; t 85.2 0.96 3.3E-05 38.3 4.5 39 657-698 16-54 (69)
152 1vyx_A ORF K3, K3RING; zinc-bi 84.6 0.13 4.5E-06 41.7 -0.9 45 1-55 8-54 (60)
153 3lrq_A E3 ubiquitin-protein li 83.6 0.32 1.1E-05 42.3 1.1 41 2-55 25-65 (100)
154 2egp_A Tripartite motif-contai 82.0 0.97 3.3E-05 36.7 3.3 32 24-55 29-60 (79)
155 2e5q_A PHD finger protein 19; 81.5 1.5 5.2E-05 36.5 4.2 39 658-697 9-47 (63)
156 2ea6_A Ring finger protein 4; 81.1 0.29 1E-05 38.6 -0.1 47 1-55 17-63 (69)
157 2ysl_A Tripartite motif-contai 81.0 0.52 1.8E-05 37.8 1.4 28 24-55 37-64 (73)
158 2wac_A CG7008-PA; unknown func 80.8 1.5 5E-05 42.4 4.7 44 657-702 52-96 (218)
159 2d8t_A Dactylidin, ring finger 80.6 0.62 2.1E-05 37.7 1.6 25 24-55 32-56 (71)
160 1iym_A EL5; ring-H2 finger, ub 79.9 0.55 1.9E-05 35.7 1.1 47 138-196 6-52 (55)
161 2ckl_B Ubiquitin ligase protei 79.7 0.58 2E-05 43.9 1.4 42 1-55 56-97 (165)
162 3a1b_A DNA (cytosine-5)-methyl 79.5 0.59 2E-05 45.3 1.4 47 4-55 81-132 (159)
163 2xjy_A Rhombotin-2; oncoprotei 79.4 1.1 3.9E-05 40.1 3.1 67 99-169 27-94 (131)
164 2lcd_A AT-rich interactive dom 80.1 0.41 1.4E-05 44.2 0.0 46 654-701 54-99 (118)
165 3l11_A E3 ubiquitin-protein li 78.1 1.4 4.7E-05 38.8 3.2 26 24-55 32-57 (115)
166 3ntk_A Maternal protein tudor; 77.7 1.4 4.8E-05 41.9 3.4 44 655-699 46-90 (169)
167 1chc_A Equine herpes virus-1 r 77.6 0.61 2.1E-05 37.0 0.7 28 21-55 20-47 (68)
168 2jrp_A Putative cytoplasmic pr 77.5 1.1 3.9E-05 39.0 2.4 49 118-196 12-60 (81)
169 3fdr_A Tudor and KH domain-con 77.4 2.3 7.9E-05 36.6 4.4 45 656-701 27-72 (94)
170 1rut_X Flinc4, fusion protein 77.4 0.56 1.9E-05 45.2 0.5 67 100-170 31-98 (188)
171 2eqk_A Tudor domain-containing 77.2 2.3 7.8E-05 37.4 4.2 47 658-704 23-69 (85)
172 3ng2_A RNF4, snurf, ring finge 76.7 0.5 1.7E-05 37.7 -0.0 46 2-55 13-58 (71)
173 2ysj_A Tripartite motif-contai 76.7 0.66 2.3E-05 36.4 0.7 27 24-54 37-63 (63)
174 2djb_A Polycomb group ring fin 76.1 0.77 2.6E-05 37.2 0.9 30 19-55 28-57 (72)
175 2rgt_A Fusion of LIM/homeobox 76.0 2.4 8.2E-05 40.0 4.5 63 99-169 31-93 (169)
176 2jtn_A LIM domain-binding prot 75.3 2.3 8E-05 40.5 4.3 64 99-170 85-148 (182)
177 4a0k_B E3 ubiquitin-protein li 74.8 0.61 2.1E-05 42.7 0.0 26 23-55 82-107 (117)
178 2hqx_A P100 CO-activator tudor 74.7 2.8 9.6E-05 41.6 4.8 44 657-702 66-110 (246)
179 2yur_A Retinoblastoma-binding 74.6 0.96 3.3E-05 37.0 1.1 27 24-55 33-59 (74)
180 2ct2_A Tripartite motif protei 74.6 1.1 3.8E-05 37.0 1.6 28 24-55 36-63 (88)
181 1v87_A Deltex protein 2; ring- 74.2 1.4 4.7E-05 38.6 2.1 54 138-196 26-91 (114)
182 2y43_A E3 ubiquitin-protein li 73.8 1.1 3.9E-05 38.3 1.5 29 20-55 36-64 (99)
183 3k1l_B Fancl; UBC, ring, RWD, 73.6 1.1 3.8E-05 48.5 1.6 55 139-196 310-370 (381)
184 2ecj_A Tripartite motif-contai 72.9 1.5 5E-05 33.5 1.7 27 24-54 32-58 (58)
185 2xdp_A Lysine-specific demethy 72.7 3.7 0.00013 38.2 4.7 53 644-700 54-106 (123)
186 1jm7_A BRCA1, breast cancer ty 72.5 1.2 4E-05 38.6 1.3 28 24-55 38-65 (112)
187 2xeu_A Ring finger protein 4; 72.4 0.43 1.5E-05 37.1 -1.4 46 2-55 6-51 (64)
188 3fl2_A E3 ubiquitin-protein li 72.0 0.94 3.2E-05 40.5 0.5 26 24-55 69-94 (124)
189 4ayc_A E3 ubiquitin-protein li 71.9 1.1 3.6E-05 41.1 0.9 25 24-55 70-94 (138)
190 2ckl_A Polycomb group ring fin 71.8 1.4 4.7E-05 38.4 1.5 31 18-55 27-57 (108)
191 2jne_A Hypothetical protein YF 71.1 1.6 5.4E-05 39.4 1.8 37 96-145 33-69 (101)
192 2ct2_A Tripartite motif protei 70.4 0.93 3.2E-05 37.5 0.1 50 138-196 16-65 (88)
193 2ecm_A Ring finger and CHY zin 70.0 1.6 5.4E-05 33.0 1.3 47 138-196 6-52 (55)
194 3dpl_R Ring-box protein 1; ubi 69.1 1.3 4.5E-05 39.6 0.8 68 117-196 30-98 (106)
195 2cup_A Skeletal muscle LIM-pro 69.0 4.8 0.00016 34.3 4.3 64 99-169 31-94 (101)
196 1wgs_A MYST histone acetyltran 68.4 8.3 0.00028 36.0 6.1 37 658-695 14-54 (133)
197 2csy_A Zinc finger protein 183 68.1 1.3 4.4E-05 36.6 0.5 26 23-55 31-56 (81)
198 2ecy_A TNF receptor-associated 67.5 1.6 5.3E-05 34.7 0.9 27 23-55 31-57 (66)
199 2d8s_A Cellular modulator of i 67.4 1.1 3.8E-05 38.1 -0.0 50 138-197 16-68 (80)
200 1t1h_A Gspef-atpub14, armadill 66.4 1.8 6.1E-05 35.3 1.0 26 24-55 25-50 (78)
201 2ep4_A Ring finger protein 24; 66.1 0.91 3.1E-05 36.7 -0.8 50 138-200 16-65 (74)
202 2ecw_A Tripartite motif-contai 66.0 2 6.9E-05 34.9 1.3 31 24-55 36-66 (85)
203 2diq_A Tudor and KH domain-con 65.9 3.4 0.00012 36.6 2.8 46 656-702 32-78 (110)
204 3pfq_A PKC-B, PKC-beta, protei 65.9 3.2 0.00011 47.2 3.3 68 18-85 64-146 (674)
205 3k1l_B Fancl; UBC, ring, RWD, 65.2 1.9 6.6E-05 46.7 1.3 36 2-39 311-348 (381)
206 2ecn_A Ring finger protein 141 64.3 1.2 4E-05 35.6 -0.4 25 24-55 31-55 (70)
207 2ct0_A Non-SMC element 1 homol 63.7 2.5 8.6E-05 35.8 1.5 29 56-86 17-45 (74)
208 2ecv_A Tripartite motif-contai 62.9 1.9 6.4E-05 35.1 0.5 31 24-55 36-66 (85)
209 1b8t_A Protein (CRP1); LIM dom 62.9 3.8 0.00013 39.3 2.8 12 52-63 32-43 (192)
210 2qqr_A JMJC domain-containing 62.6 8.8 0.0003 35.5 5.0 53 644-700 53-105 (118)
211 1weq_A PHD finger protein 7; s 60.4 7.8 0.00027 34.0 4.0 35 15-55 42-77 (85)
212 3dlm_A Histone-lysine N-methyl 60.3 9.2 0.00031 38.6 5.0 46 655-701 7-54 (213)
213 2lq6_A Bromodomain-containing 60.2 3.7 0.00013 35.7 1.9 19 153-171 29-49 (87)
214 1z6u_A NP95-like ring finger p 59.7 2.6 8.7E-05 39.5 0.9 27 23-55 94-120 (150)
215 3ztg_A E3 ubiquitin-protein li 56.9 2.8 9.4E-05 35.2 0.5 27 24-55 31-57 (92)
216 2ecv_A Tripartite motif-contai 56.9 3.4 0.00012 33.5 1.1 50 138-197 20-69 (85)
217 4a0k_B E3 ubiquitin-protein li 55.9 2.8 9.5E-05 38.4 0.4 68 117-196 41-109 (117)
218 2lcc_A AT-rich interactive dom 54.8 24 0.00082 30.0 6.0 50 658-714 7-60 (76)
219 4b9w_A TDRD1, tudor domain-con 54.0 14 0.00049 35.7 5.2 52 657-711 66-118 (201)
220 1e4u_A Transcriptional repress 53.7 4.4 0.00015 34.1 1.3 26 24-55 32-57 (78)
221 2ea6_A Ring finger protein 4; 53.3 2.4 8.2E-05 33.2 -0.4 49 138-196 16-65 (69)
222 2jtn_A LIM domain-binding prot 53.3 8 0.00027 36.8 3.2 18 94-111 140-157 (182)
223 3nw0_A Non-structural maintena 52.9 5.4 0.00019 40.4 2.0 31 19-54 193-223 (238)
224 1g25_A CDK-activating kinase a 52.7 4.1 0.00014 32.1 0.9 27 23-55 24-50 (65)
225 2ckl_B Ubiquitin ligase protei 52.2 3.2 0.00011 38.8 0.2 46 138-197 55-100 (165)
226 3ng2_A RNF4, snurf, ring finge 52.0 2 6.7E-05 34.1 -1.1 49 138-196 11-60 (71)
227 2xqn_T Testin, TESS; metal-bin 51.7 8.5 0.00029 34.1 2.9 64 99-169 28-93 (126)
228 1jm7_B BARD1, BRCA1-associated 51.3 7.8 0.00027 34.2 2.6 15 24-38 40-54 (117)
229 1ib8_A Conserved protein SP14. 51.2 16 0.00056 35.0 4.9 36 657-694 101-139 (164)
230 2rgt_A Fusion of LIM/homeobox 50.5 7.9 0.00027 36.4 2.6 18 94-111 86-103 (169)
231 2f5k_A MORF-related gene 15 is 50.5 32 0.0011 30.9 6.4 47 658-713 24-72 (102)
232 3sd4_A PHD finger protein 20; 49.8 22 0.00077 29.2 4.9 38 658-696 14-51 (69)
233 2eqm_A PHD finger protein 20-l 49.2 25 0.00084 30.7 5.3 38 658-696 21-58 (88)
234 2ckl_A Polycomb group ring fin 49.1 6.9 0.00024 33.9 1.8 46 138-198 16-61 (108)
235 2ect_A Ring finger protein 126 49.1 5.5 0.00019 32.3 1.1 44 56-103 17-60 (78)
236 3nw0_A Non-structural maintena 48.8 5.3 0.00018 40.5 1.2 43 56-102 182-224 (238)
237 1y96_A Gemin6, SIP2, GEM-assoc 48.4 20 0.00068 31.5 4.6 35 657-692 14-49 (86)
238 1x4j_A Ring finger protein 38; 48.3 1.7 5.9E-05 35.3 -2.1 44 56-103 25-68 (75)
239 2eko_A Histone acetyltransfera 47.6 16 0.00056 31.9 4.0 40 658-697 11-55 (87)
240 3pfq_A PKC-B, PKC-beta, protei 47.2 10 0.00035 43.1 3.3 30 56-85 50-81 (674)
241 2kiz_A E3 ubiquitin-protein li 46.5 2.6 8.8E-05 33.5 -1.2 44 56-103 16-59 (69)
242 1rmd_A RAG1; V(D)J recombinati 45.8 5.7 0.00019 34.8 0.8 27 23-55 39-65 (116)
243 3lrq_A E3 ubiquitin-protein li 45.6 3.5 0.00012 35.6 -0.6 44 139-196 24-67 (100)
244 2enz_A NPKC-theta, protein kin 43.4 21 0.00073 28.7 3.8 36 136-172 22-57 (65)
245 2co8_A NEDD9 interacting prote 43.3 22 0.00077 29.4 4.0 12 100-111 41-52 (82)
246 1faq_A RAF-1; transferase, ser 43.3 13 0.00046 28.3 2.4 32 136-172 13-44 (52)
247 1bor_A Transcription factor PM 41.1 16 0.00056 28.1 2.7 13 24-36 23-35 (56)
248 2l0b_A E3 ubiquitin-protein li 41.0 3.3 0.00011 35.2 -1.5 44 56-103 42-85 (91)
249 3hct_A TNF receptor-associated 40.9 5.4 0.00018 35.3 -0.2 26 24-55 35-60 (118)
250 4b9x_A TDRD1, tudor domain-con 40.3 21 0.0007 35.3 3.9 44 657-701 66-110 (226)
251 3gj8_B Nuclear pore complex pr 40.1 12 0.0004 32.7 1.8 12 92-103 62-73 (92)
252 3bdl_A Staphylococcal nuclease 39.8 22 0.00077 39.8 4.6 44 657-702 412-456 (570)
253 2lq6_A Bromodomain-containing 38.1 10 0.00035 32.9 1.1 34 47-85 14-49 (87)
254 2eli_A Protein kinase C alpha 37.2 27 0.00093 29.7 3.7 36 136-172 27-62 (85)
255 1m3v_A FLIN4, fusion of the LI 37.1 8.7 0.0003 34.3 0.6 50 99-148 30-80 (122)
256 2qqr_A JMJC domain-containing 36.8 43 0.0015 31.0 5.1 38 658-697 7-44 (118)
257 2ro0_A Histone acetyltransfera 35.9 46 0.0016 29.3 5.0 38 658-697 25-64 (92)
258 4ic3_A E3 ubiquitin-protein li 35.4 26 0.00088 28.5 3.1 14 24-37 41-55 (74)
259 2bud_A Males-absent on the fir 35.4 66 0.0023 28.6 5.9 47 660-714 18-69 (92)
260 1ptq_A Protein kinase C delta 34.8 18 0.00061 27.3 1.9 35 136-171 10-44 (50)
261 4b6d_A RAC GTPase-activating p 34.4 19 0.00064 29.3 2.1 34 136-171 18-51 (61)
262 2dxu_A Biotin--[acetyl-COA-car 34.1 25 0.00085 35.2 3.4 43 659-705 188-230 (235)
263 2yuu_A NPKC-delta, protein kin 33.4 27 0.00093 29.5 3.1 36 135-171 26-61 (83)
264 1r79_A Diacylglycerol kinase, 33.3 19 0.00067 31.2 2.1 34 138-171 39-72 (84)
265 1wim_A KIAA0161 protein; ring 33.2 7.9 0.00027 32.9 -0.4 48 1-53 7-55 (94)
266 2fiy_A Protein FDHE homolog; F 32.2 12 0.00042 39.4 0.9 60 137-196 182-262 (309)
267 2egp_A Tripartite motif-contai 31.8 22 0.00076 28.5 2.1 30 74-103 29-61 (79)
268 3l11_A E3 ubiquitin-protein li 30.4 23 0.00078 30.9 2.2 27 74-103 32-58 (115)
269 2fnf_X Putative RAS effector N 29.2 34 0.0012 28.5 2.9 32 136-171 34-65 (72)
270 3rkx_A Biotin-[acetyl-COA-carb 28.8 41 0.0014 35.2 4.1 43 658-703 277-319 (323)
271 1iml_A CRIP, cysteine rich int 28.6 27 0.00093 28.2 2.2 30 100-131 26-56 (76)
272 2enn_A NPKC-theta, protein kin 28.5 33 0.0011 28.7 2.7 38 134-172 31-68 (77)
273 1y8f_A UNC-13 homolog A, MUNC1 28.1 28 0.00097 28.1 2.2 35 136-171 23-57 (66)
274 3uej_A NPKC-delta, protein kin 27.9 26 0.00089 28.2 1.9 35 136-171 19-53 (65)
275 3m9p_A MALE-specific lethal 3 27.9 1.1E+02 0.0038 27.9 6.2 47 658-712 21-78 (110)
276 2dlq_A GLI-kruppel family memb 27.1 63 0.0022 26.9 4.3 43 152-198 63-105 (124)
277 2cuq_A Four and A half LIM dom 26.9 57 0.002 26.3 3.9 14 99-112 39-52 (80)
278 2xdp_A Lysine-specific demethy 26.8 34 0.0012 31.8 2.7 40 656-697 6-45 (123)
279 2rnz_A Histone acetyltransfera 26.7 74 0.0025 28.2 4.7 38 658-697 27-66 (94)
280 2ysl_A Tripartite motif-contai 26.4 12 0.0004 29.8 -0.5 29 74-103 37-65 (73)
281 3knv_A TNF receptor-associated 26.2 9.8 0.00033 35.2 -1.1 26 23-54 47-72 (141)
282 3d0f_A Penicillin-binding 1 tr 25.9 39 0.0013 29.5 2.8 40 668-711 31-70 (106)
283 1i4k_A Putative snRNP SM-like 25.6 58 0.002 26.8 3.7 29 656-685 10-38 (77)
284 1x63_A Skeletal muscle LIM-pro 25.3 59 0.002 26.4 3.7 17 95-112 38-54 (82)
285 2k1p_A Zinc finger RAN-binding 25.3 45 0.0015 24.0 2.5 10 46-55 4-13 (33)
286 3bfm_A Biotin protein ligase-l 24.9 49 0.0017 32.8 3.7 39 657-703 191-229 (235)
287 4emg_A Probable U6 snRNA-assoc 24.2 52 0.0018 28.6 3.3 40 654-697 13-52 (93)
288 1z6u_A NP95-like ring finger p 24.2 18 0.0006 33.8 0.3 44 139-197 80-123 (150)
289 4emk_B U6 snRNA-associated SM- 23.9 56 0.0019 27.0 3.2 36 656-695 10-45 (75)
290 2d8y_A Eplin protein; LIM doma 23.7 46 0.0016 27.9 2.7 12 100-111 41-52 (91)
291 2dkt_A Ring finger and CHY zin 23.7 79 0.0027 30.1 4.6 73 70-162 28-105 (143)
292 4emk_A U6 snRNA-associated SM- 23.6 54 0.0019 28.8 3.3 37 657-697 27-63 (94)
293 2l4z_A DNA endonuclease RBBP8, 23.5 30 0.001 31.2 1.6 13 99-111 86-98 (123)
294 2dmd_A Zinc finger protein 64, 22.9 91 0.0031 24.9 4.4 41 153-197 34-74 (96)
295 2lk0_A RNA-binding protein 5; 22.5 29 0.001 24.8 1.1 17 47-63 4-28 (32)
296 1h64_1 SnRNP SM-like protein; 22.4 66 0.0023 26.4 3.4 29 656-685 10-38 (75)
297 1jm7_A BRCA1, breast cancer ty 21.5 21 0.00071 30.6 0.1 29 74-103 38-66 (112)
298 1rfh_A RAS association (ralgds 21.5 34 0.0012 27.3 1.4 31 137-171 22-52 (59)
299 2cu8_A Cysteine-rich protein 2 21.3 56 0.0019 26.2 2.7 13 100-112 35-47 (76)
300 2eay_A Biotin [acetyl-COA-carb 21.3 43 0.0015 33.4 2.4 42 658-704 186-227 (233)
301 2pk7_A Uncharacterized protein 21.1 39 0.0013 28.3 1.7 28 140-167 11-38 (69)
302 3m9q_A Protein MALE-specific l 21.0 1.9E+02 0.0064 26.0 6.2 49 658-713 21-79 (101)
303 2d9g_A YY1-associated factor 2 21.0 1.2E+02 0.004 24.2 4.4 22 91-112 7-36 (53)
304 6rxn_A Rubredoxin; electron tr 20.9 55 0.0019 25.5 2.4 31 71-102 6-37 (46)
305 3gj7_B Nuclear pore complex pr 20.8 40 0.0014 29.9 1.8 12 92-103 69-80 (98)
306 2hf1_A Tetraacyldisaccharide-1 20.8 34 0.0012 28.6 1.3 28 140-167 11-38 (68)
307 2l7y_A Putative endo-beta-N-ac 20.5 33 0.0011 30.8 1.2 47 661-709 7-53 (98)
308 2jr6_A UPF0434 protein NMA0874 20.3 35 0.0012 28.5 1.3 12 155-166 26-37 (68)
309 1nj3_A NPL4; NZF domain, rubre 20.0 41 0.0014 23.5 1.4 9 47-55 5-13 (31)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.82 E-value=6.9e-21 Score=171.83 Aligned_cols=100 Identities=30% Similarity=0.828 Sum_probs=86.7
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCccccccccCCCCCceeecCCCCCcccccc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYC 83 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr~C~VC~~sgd~~kLL~CdrC~raYH~~C 83 (719)
+|.+|+.+|. .++||.|+.|+++||+.||.+...+ ++.+.|+|++|.+|.+|+..+++..||.|+.|+++||.+|
T Consensus 9 ~C~~C~~~g~--~~~ll~C~~C~~~~H~~Cl~~~~~~---~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~C 83 (111)
T 2ysm_A 9 NCAVCDSPGD--LLDQFFCTTCGQHYHGMCLDIAVTP---LKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFC 83 (111)
T ss_dssp CBTTTCCCCC--TTTSEECSSSCCEECTTTTTCCCCT---TTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGG
T ss_pred CCcCCCCCCC--CcCCeECCCCCCCcChHHhCCcccc---ccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHh
Confidence 5666655552 3578999999999999999997643 3458999999999999999998889999999999999999
Q ss_pred cCCCCcCCCCCCcccCCCCccCCCC
Q 005013 84 QHPPHKNVSSGPYLCPKHTKCHSCG 108 (719)
Q Consensus 84 L~PpL~~Ip~g~W~CP~C~~C~sCg 108 (719)
+.|++..+|.+.|+|+.|..|..++
T Consensus 84 l~ppl~~~P~g~W~C~~C~~c~~g~ 108 (111)
T 2ysm_A 84 LQPVMKSVPTNGWKCKNCRICISGP 108 (111)
T ss_dssp SSSCCSSCCSSCCCCHHHHCCSCSC
T ss_pred cCCccccCCCCCcCCcCCcCcCCCC
Confidence 9999999999999999998877654
No 2
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.81 E-value=1.1e-20 Score=171.48 Aligned_cols=102 Identities=26% Similarity=0.772 Sum_probs=86.0
Q ss_pred CCccCcCCc-cCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCccccccccCC-CCCceeecCCCCCc
Q 005013 1 MCRLCFVGE-NEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTG-DPNKFMFCRRCDAA 78 (719)
Q Consensus 1 ~C~iC~~Ce-~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr~C~VC~~sg-d~~kLL~CdrC~ra 78 (719)
+|.+|...+ .+.++..++||.|+.|+++||++||+..+.....++.+.|+|++|++|.+|+..+ +++.||+|+.|+++
T Consensus 7 ~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~ 86 (112)
T 3v43_A 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRG 86 (112)
T ss_dssp SBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCE
T ss_pred cccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCCCCCe
Confidence 588888774 2233456799999999999999999976544344557899999999999999865 44589999999999
Q ss_pred ccccccCCCCcCCCCCCcccCCCC
Q 005013 79 YHCYCQHPPHKNVSSGPYLCPKHT 102 (719)
Q Consensus 79 YH~~CL~PpL~~Ip~g~W~CP~C~ 102 (719)
||..|+.|++..+|.+.|+|+.|.
T Consensus 87 yH~~Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 87 FHMECCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp ECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred eecccCCCCCCCCCCCCeECCCCC
Confidence 999999999999999999999985
No 3
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.81 E-value=4.5e-21 Score=174.77 Aligned_cols=102 Identities=28% Similarity=0.800 Sum_probs=87.0
Q ss_pred CCccCcCCcc--CCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCccccccccCCCCCceeecCCCCCc
Q 005013 1 MCRLCFVGEN--EGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAA 78 (719)
Q Consensus 1 ~C~iC~~Ce~--~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr~C~VC~~sgd~~kLL~CdrC~ra 78 (719)
+|.||...+. ...+..++||.|+.|+++||+.||++.......++.+.|+|++|..|.+|+...+++.||.|+.|+++
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~ 82 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRG 82 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCE
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCcc
Confidence 5888876641 12334679999999999999999998765433445689999999999999998878899999999999
Q ss_pred ccccccCCCCcCCCCCCcccCCCC
Q 005013 79 YHCYCQHPPHKNVSSGPYLCPKHT 102 (719)
Q Consensus 79 YH~~CL~PpL~~Ip~g~W~CP~C~ 102 (719)
||.+|+.|++..+|.+.|+|+.|.
T Consensus 83 yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 83 YHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp EETTTSSSCCSSCCSSCCCCHHHH
T ss_pred ccccccCCCccCCCCCCeECcccc
Confidence 999999999999999999999875
No 4
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=131.38 Aligned_cols=96 Identities=26% Similarity=0.648 Sum_probs=76.5
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCccCCCCCCCCCCCCccccccCccccCCCccccc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFV 135 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~lfv 135 (719)
+|.+|+..++...||.|+.|+++||..|+.+.+..++.+.|+|+.|..|..|+..
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~------------------------- 63 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQS------------------------- 63 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCC-------------------------
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCcc-------------------------
Confidence 6888899887778899999999999999999887778899999999766655432
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
.+...||.|+.|+++||..|+.+... .+ +.+.|+|+.|..-
T Consensus 64 --------------~~~~~ll~Cd~C~~~yH~~Cl~ppl~-----~~-P~g~W~C~~C~~c 104 (111)
T 2ysm_A 64 --------------GEDSKMLVCDTCDKGYHTFCLQPVMK-----SV-PTNGWKCKNCRIC 104 (111)
T ss_dssp --------------SCCTTEEECSSSCCEEEGGGSSSCCS-----SC-CSSCCCCHHHHCC
T ss_pred --------------CCCCCeeECCCCCcHHhHHhcCCccc-----cC-CCCCcCCcCCcCc
Confidence 12346999999999999999985311 12 3568999999753
No 5
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.38 E-value=2e-13 Score=123.91 Aligned_cols=88 Identities=23% Similarity=0.495 Sum_probs=66.5
Q ss_pred CCCCceeecCCCCCcccccccCCC--C-cCCCCCCcccCCCCccCCCCCCCCCCCCccccccCccccCCCcccccccccc
Q 005013 64 GDPNKFMFCRRCDAAYHCYCQHPP--H-KNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYC 140 (719)
Q Consensus 64 gd~~kLL~CdrC~raYH~~CL~Pp--L-~~Ip~g~W~CP~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~lfvK~nyC 140 (719)
+..+.||.|+.|++.||..|++.. + ..++.+.|+|+.|..|..|+..
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~------------------------------ 70 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQ------------------------------ 70 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCC------------------------------
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCc------------------------------
Confidence 455689999999999999999853 2 2457889999999776666532
Q ss_pred ccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 141 PVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 141 ~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
..+...||.||.|+++||..|+.+.. ...+.+.|+|+.|+.
T Consensus 71 --------~~~~~~ll~Cd~C~~~yH~~Cl~p~l------~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 71 --------GKNADNMLFCDSCDRGFHMECCDPPL------TRMPKGMWICQICRP 111 (112)
T ss_dssp --------CCTTCCCEECTTTCCEECGGGCSSCC------SSCCSSCCCCTTTSC
T ss_pred --------CCCccceEEcCCCCCeeecccCCCCC------CCCCCCCeECCCCCC
Confidence 11245799999999999999996421 122456899999985
No 6
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.35 E-value=2.6e-13 Score=123.60 Aligned_cols=87 Identities=22% Similarity=0.511 Sum_probs=67.3
Q ss_pred CCCCceeecCCCCCcccccccCCCCc---CCCCCCcccCCCCccCCCCCCCCCCCCccccccCccccCCCcccccccccc
Q 005013 64 GDPNKFMFCRRCDAAYHCYCQHPPHK---NVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYC 140 (719)
Q Consensus 64 gd~~kLL~CdrC~raYH~~CL~PpL~---~Ip~g~W~CP~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~lfvK~nyC 140 (719)
++.+.||.|+.|++.||..|+++... .++.+.|+|+.|..|..|+..
T Consensus 18 g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~------------------------------ 67 (114)
T 2kwj_A 18 GRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTS------------------------------ 67 (114)
T ss_dssp CCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCC------------------------------
T ss_pred CCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCccccc------------------------------
Confidence 34568999999999999999997643 357789999998776666532
Q ss_pred ccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 141 PVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 141 ~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
.+++.||.||.|+++||..|+.+.. ...+.+.|+|+.|..
T Consensus 68 ---------~~~~~ll~Cd~C~~~yH~~Cl~ppl------~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 68 ---------ENDDQLLFCDDCDRGYHMYCLNPPV------AEPPEGSWSCHLCWE 107 (114)
T ss_dssp ---------TTTTTEEECSSSCCEEETTTSSSCC------SSCCSSCCCCHHHHH
T ss_pred ---------CCCCceEEcCCCCccccccccCCCc------cCCCCCCeECccccc
Confidence 1246799999999999999998421 122457899999964
No 7
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.28 E-value=3.2e-12 Score=116.20 Aligned_cols=81 Identities=25% Similarity=0.599 Sum_probs=68.8
Q ss_pred ccCcCCccCCcccCCceEEeC--cCCCcchhhhcCCCcccccccCCCCCCCCCCccccccccCCCCCceeecCCCCCccc
Q 005013 3 RLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYH 80 (719)
Q Consensus 3 ~iC~~Ce~~Gse~~eeLL~Cd--~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr~C~VC~~sgd~~kLL~CdrC~raYH 80 (719)
++|+.|..+| +||.|+ .|+++||..||+... ++.+.|+||.| .|.+|++... +.|..|+++||
T Consensus 16 ~~C~~C~~~G-----~ll~CD~~~Cp~~fH~~Cl~L~~-----~P~g~W~Cp~c-~C~~C~k~~~----~~C~~Cp~sfC 80 (107)
T 4gne_A 16 DYCFQCGDGG-----ELVMCDKKDCPKAYHLLCLNLTQ-----PPYGKWECPWH-QCDECSSAAV----SFCEFCPHSFC 80 (107)
T ss_dssp SSCTTTCCCS-----EEEECCSTTCCCEECTGGGTCSS-----CCSSCCCCGGG-BCTTTCSBCC----EECSSSSCEEC
T ss_pred CCCCcCCCCC-----cEeEECCCCCCcccccccCcCCc-----CCCCCEECCCC-CCCcCCCCCC----cCcCCCCcchh
Confidence 3566676555 899999 899999999998432 23589999999 7999998763 89999999999
Q ss_pred ccccCCCCcCCCCCCccc
Q 005013 81 CYCQHPPHKNVSSGPYLC 98 (719)
Q Consensus 81 ~~CL~PpL~~Ip~g~W~C 98 (719)
..|+.+.+...+...|+|
T Consensus 81 ~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 81 KDHEKGALVPSALEGRLC 98 (107)
T ss_dssp TTTCTTSCEECTTTTCEE
T ss_pred hhccCCcceecCCCCcee
Confidence 999999998888899987
No 8
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=6.3e-12 Score=107.99 Aligned_cols=71 Identities=34% Similarity=0.872 Sum_probs=61.1
Q ss_pred CcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCC
Q 005013 12 GCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV 91 (719)
Q Consensus 12 Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~I 91 (719)
|+.+. ..+.|..|... +.|.|++| .|.+|+...+.+.||+|+.|+++||++|++|++..+
T Consensus 4 ~~~~~-~~~~c~~C~~~------------------~~w~C~~c-~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~ 63 (77)
T 2e6s_A 4 GSSGR-NDTECDLCGGD------------------PEKKCHSC-SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKV 63 (77)
T ss_dssp CCCCC-CCCCCTTTCSC------------------SSSCCSSS-SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSC
T ss_pred ccccc-CCccChhhcCC------------------CCeECCCC-CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCC
Confidence 34443 67788877642 45999999 999999988788999999999999999999999999
Q ss_pred CCC-CcccCCCC
Q 005013 92 SSG-PYLCPKHT 102 (719)
Q Consensus 92 p~g-~W~CP~C~ 102 (719)
|.+ .|+|+.|.
T Consensus 64 P~g~~W~C~~C~ 75 (77)
T 2e6s_A 64 PEEEYWYCPSCK 75 (77)
T ss_dssp CCSSCCCCTTTC
T ss_pred CCCCCcCCcCcc
Confidence 999 99999985
No 9
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.22 E-value=6.6e-12 Score=105.89 Aligned_cols=56 Identities=36% Similarity=0.948 Sum_probs=52.4
Q ss_pred CCCCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCC-CcccCCCCc
Q 005013 47 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKHTK 103 (719)
Q Consensus 47 ~~W~Cp~Cr~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g-~W~CP~C~~ 103 (719)
..|.|+.| .|.+|++..+.+.||.|+.|+++||+.|++|++..+|.+ .|+|+.|..
T Consensus 12 ~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 12 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 67999999 999999888778999999999999999999999999999 999999863
No 10
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=106.23 Aligned_cols=55 Identities=36% Similarity=0.959 Sum_probs=52.5
Q ss_pred CCCCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCC-cccCCCC
Q 005013 47 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGP-YLCPKHT 102 (719)
Q Consensus 47 ~~W~Cp~Cr~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~-W~CP~C~ 102 (719)
..|+|+.| .|.+|++..+++.||+|+.|+++||++|+.|++..+|.+. |+|+.|.
T Consensus 20 ~~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 20 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred CCCCCCCC-cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 67999999 9999999998889999999999999999999999999998 9999985
No 11
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=6.1e-11 Score=104.75 Aligned_cols=58 Identities=34% Similarity=0.828 Sum_probs=54.1
Q ss_pred CCCCCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 46 WSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 46 ~~~W~Cp~Cr~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
...|.|.++.+|.+|+..++++.||.|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus 8 ~s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 8 HSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CchhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3679999999999999998777899999999999999999999999999999999865
No 12
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.97 E-value=7e-10 Score=100.86 Aligned_cols=68 Identities=26% Similarity=0.688 Sum_probs=55.5
Q ss_pred cccccccCCCCCceeecC--CCCCcccccccCCCCcCCCCCCcccCCCCccCCCCCCCCCCCCccccccCccccCCCccc
Q 005013 56 ICEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRL 133 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~Cd--rC~raYH~~CL~PpL~~Ip~g~W~CP~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~l 133 (719)
+|.+|+..+ .||.|+ .|+++||..|++ +..+|.+.|+||.|. |..|+..
T Consensus 17 ~C~~C~~~G---~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~-C~~C~k~----------------------- 67 (107)
T 4gne_A 17 YCFQCGDGG---ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ-CDECSSA----------------------- 67 (107)
T ss_dssp SCTTTCCCS---EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB-CTTTCSB-----------------------
T ss_pred CCCcCCCCC---cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC-CCcCCCC-----------------------
Confidence 567777655 799999 899999999998 788999999999984 5555432
Q ss_pred cccccccccccccccCCCCCCceeccCCCCeeccCCCCC
Q 005013 134 FVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 172 (719)
Q Consensus 134 fvK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~l 172 (719)
..+.|..|+..||.+|+..
T Consensus 68 --------------------~~~~C~~Cp~sfC~~c~~g 86 (107)
T 4gne_A 68 --------------------AVSFCEFCPHSFCKDHEKG 86 (107)
T ss_dssp --------------------CCEECSSSSCEECTTTCTT
T ss_pred --------------------CCcCcCCCCcchhhhccCC
Confidence 1267999999999999873
No 13
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.97 E-value=2.1e-10 Score=90.24 Aligned_cols=48 Identities=31% Similarity=0.971 Sum_probs=44.3
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
.|.+|+..++++.||.|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588899888888999999999999999999999999999999999864
No 14
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.94 E-value=3.7e-10 Score=114.37 Aligned_cols=55 Identities=36% Similarity=0.960 Sum_probs=48.1
Q ss_pred CCCCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCC-CcccCCCC
Q 005013 47 SSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSG-PYLCPKHT 102 (719)
Q Consensus 47 ~~W~Cp~Cr~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g-~W~CP~C~ 102 (719)
..|.|..| .|.+|+...+++.||+|+.|+++||..|+.|++..+|.+ .|+||.|.
T Consensus 168 ~~w~C~~c-~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 168 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp TTSCCTTT-SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred cCEecCCC-CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence 57999999 999999988888999999999999999999999999999 99999985
No 15
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.86 E-value=6.7e-10 Score=109.30 Aligned_cols=63 Identities=37% Similarity=0.943 Sum_probs=51.6
Q ss_pred cccccccccccccCCC-CCCceeccCCCCeeccCCCCCChHHHhhhc-cCCCCceeCCCCCCCCC
Q 005013 136 KGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISDEKYLQFQ-VDGNLQYRCPTCRGECY 198 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsd-gg~MIqCD~C~~wFH~eCL~lsdEkye~~~-id~d~~Y~CptCr~~~~ 198 (719)
+++||++|.++|++++ +..||+||.|..|||..|++++++.++.+. .+.+..|.|+.|+....
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 4789999999998876 678999999999999999999887776653 22234799999997654
No 16
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.85 E-value=2.6e-09 Score=94.19 Aligned_cols=57 Identities=21% Similarity=0.566 Sum_probs=50.8
Q ss_pred CCCCCCCCCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCcc
Q 005013 45 HWSSWKCPSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKC 104 (719)
Q Consensus 45 ~~~~W~Cp~Cr~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~C 104 (719)
....|....-.+|.+|+..+ .||+|+.|+++||.+|+.|++..+|.+.|+|+.|..+
T Consensus 16 ~~~~~~d~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 16 DEFGTLDDSATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCCCSSSSSSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccccccCCCCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34678888777999999877 7999999999999999999999999999999999764
No 17
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.78 E-value=3.3e-09 Score=86.99 Aligned_cols=45 Identities=33% Similarity=1.026 Sum_probs=39.7
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
+|.+|+..+ .||.|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus 11 ~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 11 FCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred cCCCCCCCC---CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 566667655 799999999999999999999999999999999864
No 18
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.74 E-value=4.9e-09 Score=85.98 Aligned_cols=49 Identities=31% Similarity=0.844 Sum_probs=41.8
Q ss_pred CCCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 52 PSCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 52 p~Cr~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
..-.+|.+|+..+ .||.|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus 9 ~~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGG---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCS---SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCC---cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3334677777755 899999999999999999999999999999999854
No 19
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.74 E-value=3.3e-09 Score=88.67 Aligned_cols=45 Identities=22% Similarity=0.590 Sum_probs=39.5
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
.|.+|++.+ .||.|+.|+++||.+|+.|++..+|.+.|+|+.|..
T Consensus 14 ~C~vC~~~~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 14 RCGVCGDGT---DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTTSCCT---TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CcCCCCCCC---eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 466667655 799999999999999999999999999999999853
No 20
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=3.2e-09 Score=85.45 Aligned_cols=44 Identities=34% Similarity=1.099 Sum_probs=38.9
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCC
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 102 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~ 102 (719)
+|.+|+..+ .||.|+.|+++||..|+.|++..+|.+.|+|+.|.
T Consensus 11 ~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 11 FCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCSSSCCSS---CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCccCCCCC---eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 456667665 79999999999999999999999999999999984
No 21
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.71 E-value=3.6e-09 Score=87.87 Aligned_cols=45 Identities=31% Similarity=0.890 Sum_probs=39.3
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
+|.+|+..+ .||.|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus 10 ~C~vC~~~g---~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 10 ECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SBSSSSCCS---SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCccCCCCC---CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 455566655 799999999999999999999999999999999864
No 22
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.70 E-value=3.9e-09 Score=85.94 Aligned_cols=45 Identities=33% Similarity=1.078 Sum_probs=39.8
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
+|.+|+..+ .||.|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus 7 ~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 7 FCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp SCTTTCCCS---SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCcCCCCCC---cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 566677765 899999999999999999999999999999999853
No 23
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=98.70 E-value=4.9e-09 Score=94.84 Aligned_cols=109 Identities=18% Similarity=0.373 Sum_probs=70.4
Q ss_pred CCccccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCccCCCCCCCCCCCCccccccCccccCCCcc
Q 005013 53 SCRICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGR 132 (719)
Q Consensus 53 ~Cr~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~ 132 (719)
+|.+|.+|++.. |+.|...||+.|++++ .|.|..|+.+.-++.. ...|..|
T Consensus 6 rC~~C~~C~~~~-------C~~C~~c~~~~~~~~~-------~~~~~~c~~~~~~~~~-------------~~~~~~c-- 56 (117)
T 4bbq_A 6 RCRKCKACVQGE-------CGVCHYCRDMKKFGGP-------GRMKQSCVLRQCLAPR-------------LPHSVTC-- 56 (117)
T ss_dssp CCSCSHHHHSCC-------CSCSHHHHHSGGGTSC-------CCSCCCCGGGCCSSCB-------------CCTTCBC--
T ss_pred cCCcCcCcCCcC-------CCCCCCCcCCcccCCC-------Cccccchhheeecccc-------------ccccccc--
Confidence 577788888642 9999999999999864 4888887664433221 1122222
Q ss_pred ccccccccccccccccCCC-CCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 005013 133 LFVKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 197 (719)
Q Consensus 133 lfvK~nyC~VC~K~Y~dsd-gg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~ 197 (719)
.+|..|...+.+.+ ...||+|+.|..|||..|+++..+.+. ..+....|.|+.|...+
T Consensus 57 -----~~c~~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~--~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 57 -----SLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLL--NEELPNCWECPKCYQED 115 (117)
T ss_dssp -----TTTCCBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEE--CSSSSSEEECTTTC---
T ss_pred -----cccCcccccccccccCcceEEeeecCCeEECCCCCCCccccc--cccCCCCeECCCCcCCC
Confidence 34555555543332 456999999999999999997544321 11223469999998764
No 24
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.60 E-value=1.1e-08 Score=89.58 Aligned_cols=49 Identities=24% Similarity=0.633 Sum_probs=41.9
Q ss_pred cccccccCCC--CCceeecCCCCCcccccccCCCCcC----CCCCCcccCCCCcc
Q 005013 56 ICEICRRTGD--PNKFMFCRRCDAAYHCYCQHPPHKN----VSSGPYLCPKHTKC 104 (719)
Q Consensus 56 ~C~VC~~sgd--~~kLL~CdrC~raYH~~CL~PpL~~----Ip~g~W~CP~C~~C 104 (719)
+|.+|+.... .+.||+|+.|+++||++|+.|++.. +|.+.|+|+.|..-
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred cCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 6778887654 3589999999999999999999984 89999999998753
No 25
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.56 E-value=7e-09 Score=86.43 Aligned_cols=54 Identities=26% Similarity=0.776 Sum_probs=46.3
Q ss_pred ccccccccccCCCCCCceecc-CCCCeeccCCCCCChHHHhhhccCCCCceeCCCCC
Q 005013 139 YCPVCLKVYRDSESTPMVCCD-VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 194 (719)
Q Consensus 139 yC~VC~K~Y~dsdgg~MIqCD-~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr 194 (719)
.|++|.++|++. ..||+|| .|..|||..|++++.+.|..+...+...|+|+.|.
T Consensus 10 ~C~~C~~p~~~~--~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDD--QDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTT--SCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCC--CCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 589999998764 5799999 99999999999999888887764556799999985
No 26
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.56 E-value=1.2e-08 Score=84.06 Aligned_cols=48 Identities=29% Similarity=0.852 Sum_probs=40.0
Q ss_pred cccccccC--CCCCceeecCCCCCcccccccCCCCcC--C-CCCCcccCCCCc
Q 005013 56 ICEICRRT--GDPNKFMFCRRCDAAYHCYCQHPPHKN--V-SSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~s--gd~~kLL~CdrC~raYH~~CL~PpL~~--I-p~g~W~CP~C~~ 103 (719)
+|.+|+.. .+.+.||+|+.|+++||..|+.|++.. + |.+.|+|+.|..
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 57777766 334689999999999999999998876 4 889999999864
No 27
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.53 E-value=2.5e-08 Score=81.72 Aligned_cols=54 Identities=30% Similarity=0.839 Sum_probs=42.5
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
...||++|.++|++ +..||+||.|..|||..|+++..+.... ...|+|+.|+..
T Consensus 5 e~~~C~~C~~~~~~--~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~-----~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAA--DEFWICCDLCEMWFHGKCVKITPARAEH-----IKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCS--SSCEEECSSSCCEEETTTTTCCTTGGGG-----CSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCC--CCCEEEccCCCCCCCccccCcChhHhcC-----CCcEECCCCcCc
Confidence 34689999998854 4679999999999999999987553322 247999999764
No 28
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.52 E-value=3.2e-08 Score=83.46 Aligned_cols=48 Identities=27% Similarity=0.593 Sum_probs=41.2
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
+|.+|+...+...||.|+.|+.|||..|++++...++.+.|+|+.|..
T Consensus 20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 566678777666899999999999999999988877788999999864
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.50 E-value=5.2e-08 Score=94.68 Aligned_cols=46 Identities=26% Similarity=0.808 Sum_probs=41.0
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCcc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKC 104 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~C 104 (719)
+|.+|+.++ .+++|+.|+++||..|+.|++..+|.+.|+|+.|...
T Consensus 6 ~C~~C~~~g---~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 6 WCAVCQNGG---ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCTTTCCCS---SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred ccccCCCCC---eeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 567777766 6999999999999999999999999999999999763
No 30
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.50 E-value=7.3e-08 Score=75.74 Aligned_cols=37 Identities=27% Similarity=0.821 Sum_probs=30.9
Q ss_pred CCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 16 ARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 16 ~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.++||.|+.|.++||..|+.|+.... +.+.|+|+.|.
T Consensus 12 ~~~ll~Cd~C~~~~H~~Cl~p~l~~~---P~g~W~C~~C~ 48 (51)
T 1f62_A 12 DDKLILCDECNKAFHLFCLRPALYEV---PDGEWQCPACQ 48 (51)
T ss_dssp CSCCEECTTTCCEECHHHHCTTCCSC---CSSCCSCTTTS
T ss_pred CCCEEECCCCChhhCcccCCCCcCCC---CCCcEECcCcc
Confidence 34899999999999999999865543 35899999994
No 31
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.49 E-value=2.2e-08 Score=84.77 Aligned_cols=45 Identities=31% Similarity=0.777 Sum_probs=38.7
Q ss_pred cccccccCC--CCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCC
Q 005013 56 ICEICRRTG--DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 102 (719)
Q Consensus 56 ~C~VC~~sg--d~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~ 102 (719)
+|.+|+..+ +++.||+|+.|+++||..|++|+. +|.+.|+|+.|.
T Consensus 18 ~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~ 64 (71)
T 2ku3_A 18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCL 64 (71)
T ss_dssp SCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCc
Confidence 677778765 556899999999999999999874 889999999985
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.48 E-value=5.5e-08 Score=96.32 Aligned_cols=47 Identities=23% Similarity=0.741 Sum_probs=41.5
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCccC
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCH 105 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~C~ 105 (719)
+|.+|+.++ .|++|+.|+++||..|+.|++..+|.+.|+||.|....
T Consensus 9 ~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 9 WCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 566777766 69999999999999999999999999999999997643
No 33
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.47 E-value=3.5e-08 Score=89.04 Aligned_cols=56 Identities=23% Similarity=0.713 Sum_probs=47.1
Q ss_pred ccccccccccCCCCCCceecc-CCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 139 YCPVCLKVYRDSESTPMVCCD-VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 139 yC~VC~K~Y~dsdgg~MIqCD-~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
.|++|.++|++ .+.||+|+ .|..|||..|++++.+.+..+...++..|+|+.|+..
T Consensus 5 ~C~iC~~p~~~--~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVND--DQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCT--TSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCccCC--CCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 59999999976 35699998 9999999999999988887764445678999999854
No 34
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.45 E-value=2.6e-08 Score=87.40 Aligned_cols=46 Identities=30% Similarity=0.771 Sum_probs=39.1
Q ss_pred cccccccCC--CCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTG--DPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sg--d~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
+|.+|+..+ +++.||+|+.|+.+||..|++|++ +|.+.|+|+.|..
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 667778765 456899999999999999999874 8899999999864
No 35
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.42 E-value=1.8e-07 Score=82.56 Aligned_cols=51 Identities=22% Similarity=0.570 Sum_probs=40.1
Q ss_pred ccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCccccccc
Q 005013 3 RLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICR 61 (719)
Q Consensus 3 ~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr~C~VC~ 61 (719)
++|.+|+.+| +||+|+.|+++||+.|+.|+....| .+.|+|+.|..+...+
T Consensus 26 ~~C~vC~~~g-----~LL~CD~C~~~fH~~Cl~PpL~~~P---~g~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 26 TICRVCQKPG-----DLVMCNQCEFCFHLDCHLPALQDVP---GEEWSCSLCHVLPDLK 76 (88)
T ss_dssp SCCSSSCSSS-----CCEECTTSSCEECTTSSSTTCCCCC---SSSCCCCSCCCCCSSC
T ss_pred CcCcCcCCCC-----CEEECCCCCCceecccCCCCCCCCc---CCCcCCccccCCCccc
Confidence 4677776655 7999999999999999998765433 5899999997664443
No 36
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.42 E-value=1.1e-07 Score=93.38 Aligned_cols=45 Identities=24% Similarity=0.826 Sum_probs=41.4
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
.|.+|+..+ .+++|+.|+++||..|+.|++..+|.+.|+|+.|..
T Consensus 4 ~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 4 ICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 48 (189)
T ss_dssp CBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred cCccCCCCC---ceeECCCCCchhccccCCCCcccCCCCCCCCcCccC
Confidence 688888777 699999999999999999999999999999999975
No 37
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.38 E-value=1.4e-07 Score=77.24 Aligned_cols=45 Identities=31% Similarity=0.818 Sum_probs=35.9
Q ss_pred ccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 3 RLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 3 ~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.+|.+|..+| +||.|+.|.++||..|+.++.... +.+.|+|+.|.
T Consensus 10 ~~C~vC~~~g-----~ll~Cd~C~~~fH~~Cl~ppl~~~---p~g~W~C~~C~ 54 (61)
T 1mm2_A 10 EFCRVCKDGG-----ELLCCDTCPSSYHIHCLNPPLPEI---PNGEWLCPRCT 54 (61)
T ss_dssp SSCTTTCCCS-----SCBCCSSSCCCBCSSSSSSCCSSC---CSSCCCCTTTT
T ss_pred CcCCCCCCCC-----CEEEcCCCCHHHcccccCCCcCcC---CCCccCChhhc
Confidence 4566665544 899999999999999999876543 35899999993
No 38
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.38 E-value=1.8e-07 Score=78.19 Aligned_cols=44 Identities=25% Similarity=0.559 Sum_probs=35.0
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|.+|+.+| +||.|+.|.++||.+||.++....+ .+.|+|+.|.
T Consensus 14 ~C~vC~~~~-----~ll~Cd~C~~~~H~~Cl~P~l~~~P---~g~W~C~~C~ 57 (66)
T 2lri_C 14 RCGVCGDGT-----DVLRCTHCAAAFHWRCHFPAGTSRP---GTGLRCRSCS 57 (66)
T ss_dssp CCTTTSCCT-----TCEECSSSCCEECHHHHCTTTCCCC---SSSCCCTTTT
T ss_pred CcCCCCCCC-----eEEECCCCCCceecccCCCccCcCC---CCCEECcccc
Confidence 455565544 7999999999999999998765443 5889999993
No 39
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.37 E-value=1.8e-07 Score=76.58 Aligned_cols=44 Identities=30% Similarity=0.816 Sum_probs=35.0
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
+|..|..+| +||.|+.|.++||..|+.++.... +.+.|+|+.|.
T Consensus 13 ~C~vC~~~g-----~ll~CD~C~~~fH~~Cl~p~l~~~---p~g~W~C~~C~ 56 (61)
T 2l5u_A 13 YCEVCQQGG-----EIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHCE 56 (61)
T ss_dssp SCTTTSCCS-----SEEECSSSSCEEEHHHHCTTCCSC---CCSSCCCTTGG
T ss_pred CCccCCCCC-----cEEECCCCChhhhhhccCCCCCCC---CCCceECcccc
Confidence 566665544 899999999999999999975433 35899999984
No 40
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.35 E-value=1e-07 Score=78.46 Aligned_cols=52 Identities=25% Similarity=0.624 Sum_probs=36.5
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
+|.+|..+.++..+.||+|+.|.++||+.|+.++.......+.+.|+|+.|.
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~ 59 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCc
Confidence 3444443323344689999999999999999997543211145899999984
No 41
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.34 E-value=1.2e-07 Score=82.92 Aligned_cols=52 Identities=21% Similarity=0.608 Sum_probs=37.5
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCccccc-ccCCCCCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRD-LFHWSSWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~-~~~~~~W~Cp~Cr 55 (719)
+|.+|........+.||+|+.|.++||++|+.|+....+ .++.+.|+|+.|.
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~ 70 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred cCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCcccc
Confidence 455554443333458999999999999999999765311 1346899999985
No 42
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.33 E-value=1.7e-07 Score=76.24 Aligned_cols=44 Identities=32% Similarity=0.864 Sum_probs=35.0
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
+|.+|+.+| +||.|+.|.++||+.|+.|+.... +.+.|+|+.|.
T Consensus 7 ~C~vC~~~g-----~ll~Cd~C~~~fH~~Cl~ppl~~~---p~g~W~C~~C~ 50 (60)
T 2puy_A 7 FCSVCRKSG-----QLLMCDTCSRVYHLDCLDPPLKTI---PKGMWICPRCQ 50 (60)
T ss_dssp SCTTTCCCS-----SCEECSSSSCEECGGGSSSCCSSC---CCSCCCCHHHH
T ss_pred CCcCCCCCC-----cEEEcCCCCcCEECCcCCCCcCCC---CCCceEChhcc
Confidence 466665544 899999999999999999876543 35899999983
No 43
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.32 E-value=1.6e-07 Score=77.95 Aligned_cols=44 Identities=27% Similarity=0.771 Sum_probs=34.8
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
+|.+|..+| +||.|+.|.++||+.||.|+.... +.+.|+|+.|.
T Consensus 10 ~C~vC~~~g-----~ll~CD~C~~~fH~~Cl~ppl~~~---P~g~W~C~~C~ 53 (66)
T 1xwh_A 10 ECAVCRDGG-----ELICCDGCPRAFHLACLSPPLREI---PSGTWRCSSCL 53 (66)
T ss_dssp SBSSSSCCS-----SCEECSSCCCEECTTTSSSCCSSC---CSSCCCCHHHH
T ss_pred CCccCCCCC-----CEEEcCCCChhhcccccCCCcCcC---CCCCeECcccc
Confidence 456665544 899999999999999999876543 35899999984
No 44
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.30 E-value=2.4e-07 Score=78.42 Aligned_cols=48 Identities=19% Similarity=0.495 Sum_probs=37.8
Q ss_pred ccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 3 RLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 3 ~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.+|.+|..+++...++||+|+.|+++||+.|++++. ++.+.|+|+.|.
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~-----vP~g~W~C~~C~ 64 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-----IPEGQWLCRHCL 64 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS-----CCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc-----CCCCCcCCccCc
Confidence 456666555555667999999999999999999863 235899999983
No 45
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.29 E-value=4e-07 Score=81.11 Aligned_cols=43 Identities=26% Similarity=0.607 Sum_probs=36.7
Q ss_pred ccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCC
Q 005013 59 ICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 102 (719)
Q Consensus 59 VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~ 102 (719)
+|+...+...||.|+.|+.|||..|+++++..+|. .|+|+.|.
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~ 74 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQ 74 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTS
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCc
Confidence 56666666689999999999999999998877774 79999985
No 46
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=1.8e-07 Score=75.16 Aligned_cols=44 Identities=32% Similarity=0.864 Sum_probs=34.8
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
+|.+|...| +||.|+.|.++||+.|+.|+.... +.+.|+|+.|.
T Consensus 11 ~C~vC~~~g-----~ll~Cd~C~~~~H~~Cl~ppl~~~---p~g~W~C~~C~ 54 (56)
T 2yql_A 11 FCSVCRKSG-----QLLMCDTCSRVYHLDCLDPPLKTI---PKGMWICPRCQ 54 (56)
T ss_dssp SCSSSCCSS-----CCEECSSSSCEECSSSSSSCCCSC---CCSSCCCHHHH
T ss_pred CCccCCCCC-----eEEEcCCCCcceECccCCCCcCCC---CCCceEChhhh
Confidence 466665544 899999999999999999876543 35899999883
No 47
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.29 E-value=2.5e-07 Score=79.10 Aligned_cols=53 Identities=34% Similarity=0.842 Sum_probs=41.6
Q ss_pred ccccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 005013 137 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 197 (719)
Q Consensus 137 ~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~ 197 (719)
..|| +|++.|++ +..||+||.|..|||..|+++..+.... ...|+|+.|+...
T Consensus 12 ~~~C-~C~~~~d~--~~~MIqCd~C~~WfH~~Cvgl~~~~~~~-----~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNV--NHFMIECGLCQDWFHGSCVGIEEENAVD-----IDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCS--SSCEEEBTTTCCEEEHHHHTCCHHHHTT-----CSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCC--CCceEEcCCCCCcEEeeecCcccccccC-----CCeEECCCccccc
Confidence 3477 89988743 5789999999999999999987664422 2479999998653
No 48
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=98.28 E-value=5.7e-07 Score=71.40 Aligned_cols=47 Identities=34% Similarity=0.723 Sum_probs=37.4
Q ss_pred cccccccccCCCCCCceecc-CCCCeeccCCCCCChHHHhhhccCCCCceeCCCCC
Q 005013 140 CPVCLKVYRDSESTPMVCCD-VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 194 (719)
Q Consensus 140 C~VC~K~Y~dsdgg~MIqCD-~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr 194 (719)
|.+|.++|++ +..||+|| .|..|||..|++++.+... ...|+|+.|+
T Consensus 5 cc~C~~p~~~--~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~------~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKD--KVDWVQCDGGCDEWFHQVCVGVSPEMAE------NEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCT--TCCEEECTTTTCCEEETTTTTCCHHHHH------HSCCCCSCC-
T ss_pred CCCCcCccCC--CCcEEEeCCCCCccCcccccCCCccccC------CCCEECCCCC
Confidence 6789998854 56799999 8999999999998766432 1479999995
No 49
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=5.2e-07 Score=77.49 Aligned_cols=47 Identities=30% Similarity=0.632 Sum_probs=35.2
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCC-CCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWS-SWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~-~W~Cp~Cr 55 (719)
+|.+|+... ..++||.|+.|.++||+.||.|+....| .+ .|+|+.|.
T Consensus 28 ~C~vC~~~~--~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P---~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKH--EPNMQLLCDECNVAYHIYCLNPPLDKVP---EEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCC--CSTTEEECSSSCCEEETTSSSSCCSSCC---CSSCCCCTTTC
T ss_pred CCcCcCCcC--CCCCEEEcCCCCccccccccCCCccCCC---CCCCcCCcCcc
Confidence 455554322 2358999999999999999998765433 46 89999994
No 50
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.25 E-value=5.6e-07 Score=75.80 Aligned_cols=47 Identities=26% Similarity=0.669 Sum_probs=35.5
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCC-CCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWS-SWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~-~W~Cp~Cr 55 (719)
+|.+|+..+ ..+.||.|+.|.++||+.||+|+....+ .+ .|+|+.|.
T Consensus 20 ~C~~C~~~~--~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P---~g~~W~C~~C~ 67 (70)
T 3asl_A 20 ACHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPLSSVP---SEDEWYCPECR 67 (70)
T ss_dssp SBTTTCCCS--CGGGEEECTTTCCEEEGGGSSSCCSSCC---SSSCCCCTTTS
T ss_pred CCcCCCCcC--CCCCEEEcCCCCCceecccCCCCcCCCC---CCCCcCCcCcc
Confidence 455554322 2358999999999999999998765443 46 99999994
No 51
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.24 E-value=3.1e-07 Score=80.57 Aligned_cols=46 Identities=20% Similarity=0.536 Sum_probs=36.2
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCC
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 54 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~C 54 (719)
+|.+|..+++...++||+|+.|..+||+.|+.++. ++.+.|+|+.|
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~-----vP~g~W~C~~C 72 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-----IPEGQWLCRHC 72 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS-----CCSSCCCCHHH
T ss_pred cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc-----cCCCceECccc
Confidence 45555555545566999999999999999999864 23589999998
No 52
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.22 E-value=1.1e-07 Score=90.27 Aligned_cols=80 Identities=18% Similarity=0.442 Sum_probs=60.0
Q ss_pred CCceEEeCcCCCcchhhhcCCC-cccccccCCCCCCCCCCc-----------------cccccccCCCCCceeecCCCCC
Q 005013 16 ARRMLSCKSCGKKYHRNCLKNW-AQNRDLFHWSSWKCPSCR-----------------ICEICRRTGDPNKFMFCRRCDA 77 (719)
Q Consensus 16 ~eeLL~Cd~CgksYH~~CL~p~-~e~~~~~~~~~W~Cp~Cr-----------------~C~VC~~sgd~~kLL~CdrC~r 77 (719)
..+-+.|..|+...... ..+ ....|. ...|.|..|+ +|.+|+..| .++.|+.|++
T Consensus 11 ~~~~i~Ct~Cg~~~~~~--q~~~~~~HPl--l~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~GG---~LlcCD~Cpr 83 (142)
T 2lbm_A 11 LHGIVSCTACGQQVNHF--QKDSIYRHPS--LQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGG---NLICCDFCHN 83 (142)
T ss_dssp CCCCCBCTTTCSBSTTT--CSSSEEEETT--TTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCCS---SEEECSSSCC
T ss_pred CcCCCEecCCCCccccc--cccchhcCCC--ccccccHHHHHHHhcCCceecCCCCCCeecccCCCC---cEEeCCCCCC
Confidence 44788999999876321 111 111122 3567888888 899999888 7999999999
Q ss_pred cccccccCCCCc-----C--CCCCCcccCCCC
Q 005013 78 AYHCYCQHPPHK-----N--VSSGPYLCPKHT 102 (719)
Q Consensus 78 aYH~~CL~PpL~-----~--Ip~g~W~CP~C~ 102 (719)
+||..|+.|++. . .|.+.|.|+.|.
T Consensus 84 ~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 84 AFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp EEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred eeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 999999998875 2 478999999985
No 53
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.19 E-value=6.8e-07 Score=86.82 Aligned_cols=45 Identities=33% Similarity=0.729 Sum_probs=36.2
Q ss_pred ccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 3 RLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 3 ~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
++|.+|+.+| +||+|+.|+++||..|+.|+.... +.+.|.|+.|+
T Consensus 5 ~~C~~C~~~g-----~ll~Cd~C~~~~H~~C~~p~l~~~---p~~~W~C~~C~ 49 (184)
T 3o36_A 5 DWCAVCQNGG-----ELLCCEKCPKVFHLSCHVPTLTNF---PSGEWICTFCR 49 (184)
T ss_dssp SSCTTTCCCS-----SCEECSSSSCEECTTTSSSCCSSC---CSSCCCCTTTS
T ss_pred CccccCCCCC-----eeeecCCCCcccCccccCCCCCCC---CCCCEECcccc
Confidence 3566776655 799999999999999999876543 35889999984
No 54
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.17 E-value=4.2e-07 Score=80.28 Aligned_cols=55 Identities=25% Similarity=0.637 Sum_probs=39.7
Q ss_pred ccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCccccccccC
Q 005013 3 RLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCRICEICRRT 63 (719)
Q Consensus 3 ~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr~C~VC~~s 63 (719)
.+|.+|...+. .+.||.|+.|.++||+.||.|+.... +.+.|+|+.|. -..|.++
T Consensus 17 ~~C~vC~~~~~--~~~ll~CD~C~~~~H~~Cl~Ppl~~~---P~g~W~C~~C~-~~~~~~~ 71 (92)
T 2e6r_A 17 YICQVCSRGDE--DDKLLFCDGCDDNYHIFCLLPPLPEI---PRGIWRCPKCI-LAECKQP 71 (92)
T ss_dssp CCCSSSCCSGG--GGGCEECTTTCCEECSSSSSSCCSSC---CSSCCCCHHHH-HHHHSCC
T ss_pred CCCccCCCcCC--CCCEEEcCCCCchhccccCCCCcccC---CCCCcCCccCc-CccccCC
Confidence 45666655442 35799999999999999999876543 35899999994 3334443
No 55
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.15 E-value=7.7e-07 Score=88.14 Aligned_cols=45 Identities=31% Similarity=0.690 Sum_probs=36.9
Q ss_pred ccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 3 RLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 3 ~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
++|..|+.+| +||+|+.|+++||..|+.|+.... +.+.|.|+.|.
T Consensus 8 ~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~p~l~~~---p~~~W~C~~C~ 52 (207)
T 3u5n_A 8 DWCAVCQNGG-----DLLCCEKCPKVFHLTCHVPTLLSF---PSGDWICTFCR 52 (207)
T ss_dssp SSBTTTCCCE-----EEEECSSSSCEECTTTSSSCCSSC---CSSCCCCTTTS
T ss_pred CCCCCCCCCC-----ceEEcCCCCCccCCccCCCCCCCC---CCCCEEeCcee
Confidence 5677776665 799999999999999999876543 35889999985
No 56
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.14 E-value=2.1e-07 Score=78.84 Aligned_cols=54 Identities=33% Similarity=0.851 Sum_probs=40.9
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
.|| +|++.|. +..||+||.|..|||..|+++.......+.. ....|+|+.|+..
T Consensus 17 ~~C-~C~~~~~---~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~-~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHN---NRFMICCDRCEEWFHGDCVGISEARGRLLER-NGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCC---SSCEEECSSSCCEEEHHHHSCCHHHHHHHHH-HTCCCCCHHHHHH
T ss_pred CEE-ECCCccC---CCCEEEeCCCCCcEeCeEEccchhhhhhccC-CCCeEECcCCcCc
Confidence 467 7988764 4579999999999999999988665443311 1357999999753
No 57
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.12 E-value=1.2e-06 Score=75.24 Aligned_cols=47 Identities=26% Similarity=0.671 Sum_probs=34.9
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCC-CCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSS-WKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~-W~Cp~Cr 55 (719)
.|.+|+..+ ..+.||.|+.|.++||++||.|+....+ .+. |+|+.|+
T Consensus 28 ~C~vC~~~~--d~~~ll~CD~C~~~yH~~Cl~PpL~~~P---~g~~W~C~~C~ 75 (77)
T 3shb_A 28 ACHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPLSSVP---SEDEWYCPECR 75 (77)
T ss_dssp SBTTTCCCS--CGGGEEECTTTCCEEETTTSSSCCSSCC---SSSCCCCTTTC
T ss_pred cCCccCCCC--CCcceeEeCCCCCccCcccCCCcccCCC---CCCceECcCcc
Confidence 344444332 3458999999999999999998866443 466 9999994
No 58
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.11 E-value=1.7e-06 Score=72.98 Aligned_cols=36 Identities=31% Similarity=0.794 Sum_probs=30.3
Q ss_pred CceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 17 RRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 17 eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
+.||.|+.|..+||..|+++.....+ .+.|+|+.|.
T Consensus 31 ~~mi~CD~C~~wfH~~Cv~~~~~~~~---~~~w~C~~C~ 66 (75)
T 2k16_A 31 SPMIGCDDCDDWYHWPCVGIMAAPPE---EMQWFCPKCA 66 (75)
T ss_dssp CCEEECSSSSSEEEHHHHTCSSCCCS---SSCCCCTTTH
T ss_pred CCEEEcCCCCcccccccCCCCccCCC---CCCEEChhcc
Confidence 47999999999999999999765433 3789999994
No 59
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.10 E-value=1.9e-06 Score=72.80 Aligned_cols=48 Identities=33% Similarity=0.904 Sum_probs=37.3
Q ss_pred ccccccccccccCCCCCCceeccC--CC-CeeccCCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 005013 137 GNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 197 (719)
Q Consensus 137 ~nyC~VC~K~Y~dsdgg~MIqCD~--C~-~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~ 197 (719)
..|| +|++.+ .+.||+||. |+ .|||..|+++... +.+.|+|+.|+...
T Consensus 16 ~~~C-~C~~~~----~g~MI~CD~~~C~~~wfH~~Cvgl~~~--------p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVS----YGEMIGCDNPDCSIEWFHFACVGLTTK--------PRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCS----CSSEECCSCSSCSCCCEETTTTTCSSC--------CSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCC----CCCEeEeeCCCCCCccEecccCCcCcC--------CCCCEECCCCCccc
Confidence 3578 798764 357999999 88 6999999997532 34689999998754
No 60
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.08 E-value=2e-06 Score=76.27 Aligned_cols=48 Identities=33% Similarity=0.904 Sum_probs=37.7
Q ss_pred ccccccccccccCCCCCCceeccC--CC-CeeccCCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 005013 137 GNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 197 (719)
Q Consensus 137 ~nyC~VC~K~Y~dsdgg~MIqCD~--C~-~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~ 197 (719)
..|| +|++.+ .+.||+||. |+ .|||..|+++... +...|+|+.|+...
T Consensus 36 ~~yC-iC~~~~----~g~MI~CD~~dC~~~WfH~~CVgl~~~--------p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVS----YGEMIGCDNPDCSIEWFHFACVGLTTK--------PRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBC----CSCCCCCSCSSCSCCCCCSTTTTCSSC--------CCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCC----CCCEeEecCCCCCCCCEecccCCcCcC--------CCCCEECcCccCcC
Confidence 3578 898864 357999999 87 7999999997532 24689999998754
No 61
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=98.07 E-value=8.3e-07 Score=80.19 Aligned_cols=93 Identities=20% Similarity=0.345 Sum_probs=58.1
Q ss_pred CccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccc------cC---CCCCCCCCCccccccccCCC-CCceee
Q 005013 2 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDL------FH---WSSWKCPSCRICEICRRTGD-PNKFMF 71 (719)
Q Consensus 2 C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~------~~---~~~W~Cp~Cr~C~VC~~sgd-~~kLL~ 71 (719)
|.+|..|... .|+.|...||..|++.+...... .. ...+.|..|..|..|....+ +..||.
T Consensus 7 C~~C~~C~~~---------~C~~C~~c~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~c~~c~~c~~c~~~~~~~~~m~~ 77 (117)
T 4bbq_A 7 CRKCKACVQG---------ECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLME 77 (117)
T ss_dssp CSCSHHHHSC---------CCSCSHHHHHSGGGTSCCCSCCCCGGGCCSSCBCCTTCBCTTTCCBCCHHHHCCGGGSCEE
T ss_pred CCcCcCcCCc---------CCCCCCCCcCCcccCCCCccccchhheeeccccccccccccccCcccccccccccCcceEE
Confidence 7788777532 29999999999999876432110 00 01122333333334433332 236899
Q ss_pred cCCCCCcccccccCCCCcCCC----CCCcccCCCCc
Q 005013 72 CRRCDAAYHCYCQHPPHKNVS----SGPYLCPKHTK 103 (719)
Q Consensus 72 CdrC~raYH~~CL~PpL~~Ip----~g~W~CP~C~~ 103 (719)
|+.|..+||..|+.+....+. ...|.||.|..
T Consensus 78 C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 78 CCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp ETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 999999999999997654332 34599999853
No 62
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.07 E-value=1.4e-06 Score=85.64 Aligned_cols=45 Identities=24% Similarity=0.654 Sum_probs=36.5
Q ss_pred ccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 3 RLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 3 ~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
++|.+|+.+| +||+|+.|.++||..|+.|+.... +.+.|.|+.|.
T Consensus 3 ~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~p~l~~~---p~g~W~C~~C~ 47 (189)
T 2ro1_A 3 TICRVCQKPG-----DLVMCNQCEFCFHLDCHLPALQDV---PGEEWSCSLCH 47 (189)
T ss_dssp CCBTTTCCCS-----SCCCCTTTCCBCCSTTSTTCCSSC---CCTTCCTTTTS
T ss_pred CcCccCCCCC-----ceeECCCCCchhccccCCCCcccC---CCCCCCCcCcc
Confidence 4577776655 799999999999999999876543 35899999994
No 63
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.07 E-value=7.1e-07 Score=74.86 Aligned_cols=49 Identities=31% Similarity=0.859 Sum_probs=38.0
Q ss_pred ccccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 137 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 137 ~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
..|| +|++.+. +..||+||.|..|||..|+++.... + ...|+|+.|+..
T Consensus 19 ~~~C-iC~~~~~---~~~MIqCd~C~~WfH~~Cvgi~~~~-----~--~~~~~C~~C~~s 67 (68)
T 3o70_A 19 LVTC-FCMKPFA---GRPMIECNECHTWIHLSCAKIRKSN-----V--PEVFVCQKCRDS 67 (68)
T ss_dssp CCCS-TTCCCCT---TCCEEECTTTCCEEETTTTTCCTTS-----C--CSSCCCHHHHTC
T ss_pred ceEe-ECCCcCC---CCCEEECCCCCccccccccCcCccc-----C--CCcEECCCCCCC
Confidence 3477 8988653 5679999999999999999986431 1 248999999753
No 64
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.02 E-value=2.9e-06 Score=71.72 Aligned_cols=44 Identities=20% Similarity=0.717 Sum_probs=35.7
Q ss_pred cccccccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~Cdr--C~-raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
+| +|++... ..||.|+. |+ .|||..|++ +..+|.+.|+||.|..
T Consensus 18 ~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 18 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp CS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSS
T ss_pred EE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCc
Confidence 55 5777544 47999999 88 699999999 6677889999999864
No 65
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.00 E-value=3e-06 Score=75.47 Aligned_cols=43 Identities=23% Similarity=0.632 Sum_probs=33.8
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
+|..+...| .||.|+.|..+||..|+++.....+ ..|+|+.|+
T Consensus 32 iC~~~~~~~-----~mi~Cd~C~~w~H~~C~~~~~~~~p----~~w~C~~C~ 74 (98)
T 2lv9_A 32 ICGFTHDDG-----YMICCDKCSVWQHIDCMGIDRQHIP----DTYLCERCQ 74 (98)
T ss_dssp TTSCCSCSS-----CEEEBTTTCBEEETTTTTCCTTSCC----SSBCCTTTS
T ss_pred ECCCccCCC-----cEEEcCCCCCcCcCcCCCCCccCCC----CCEECCCCc
Confidence 666665444 8999999999999999998754332 479999994
No 66
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.99 E-value=1.5e-06 Score=73.08 Aligned_cols=50 Identities=28% Similarity=0.601 Sum_probs=37.4
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
.|| +|++.+++ +..||+||.|..|||..|+++.... .....|+|+.|+..
T Consensus 17 ~~C-~C~~~~~~--g~~mI~Cd~C~~W~H~~Cvg~~~~~------~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDD--GERMLACDGCGVWHHTRCIGINNAD------ALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCC--SSCEEECSSSCEEEETTTTTCCTTS------CCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCC--CCcEEECCCCCCccCCeeeccCccc------cCCCcEECCCccCC
Confidence 467 68886533 4579999999999999999976431 11358999999753
No 67
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.97 E-value=9.7e-07 Score=72.85 Aligned_cols=47 Identities=34% Similarity=0.948 Sum_probs=36.7
Q ss_pred ccccccccccccCCCCCCceeccC--CC-CeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 137 GNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 137 ~nyC~VC~K~Y~dsdgg~MIqCD~--C~-~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
..|| +|++.+ .+.||+||. |+ .|||..|+++... +.+.|+|+.|+..
T Consensus 11 ~~yC-~C~~~~----~g~MI~CD~c~C~~~WfH~~Cvgl~~~--------p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYC-LCNQVS----YGEMIGCDNEQCPIEWFHFSCVSLTYK--------PKGKWYCPKCRGD 60 (62)
T ss_dssp CEET-TTTEEC----CSEEEECSCTTCSSCEEETGGGTCSSC--------CSSCCCCHHHHTC
T ss_pred CcEE-ECCCCC----CCCeeeeeCCCCCcccEecccCCcCcC--------CCCCEECcCcccC
Confidence 3578 898863 357999999 66 9999999997532 3468999999764
No 68
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.95 E-value=4.7e-06 Score=73.84 Aligned_cols=44 Identities=20% Similarity=0.717 Sum_probs=35.7
Q ss_pred cccccccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~Cdr--C~-raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
+| +|++... ..||.|+. |+ .|||..|++ +...|.+.|+||.|..
T Consensus 38 yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 38 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 84 (91)
T ss_dssp CS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCC
T ss_pred EE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccC
Confidence 55 7777544 47999999 77 799999999 5667789999999854
No 69
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.94 E-value=1.1e-06 Score=84.41 Aligned_cols=53 Identities=34% Similarity=0.733 Sum_probs=41.1
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
...|| +|++.+. +++.||+||.|+.|||..|+++...... ....|+|+.|+..
T Consensus 7 ~~~~C-~C~~~~~--~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~-----~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPED--ESKFYIGCDRCQNWYHGRCVGILQSEAE-----LIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECC--TTSCEEECTTTCCEEEHHHHTCCHHHHT-----TCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCC--CCCCEeECCCCCchhChhhcCCchhhcc-----CccCeecCCCcch
Confidence 34589 9998864 3568999999999999999998654321 2358999999853
No 70
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.94 E-value=1.2e-06 Score=71.59 Aligned_cols=46 Identities=30% Similarity=0.857 Sum_probs=36.2
Q ss_pred ccccccccccccCCCCCCceeccC--CC-CeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 137 GNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 137 ~nyC~VC~K~Y~dsdgg~MIqCD~--C~-~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
..|| +|++.+ .+.||+||. |+ .|||..|+++... +.+.|+|+.|+.
T Consensus 9 ~~yC-~C~~~~----~g~mi~CD~~~C~~~wfH~~Cvgl~~~--------p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS----YGEMIGCDNPDCPIEWFHFACVDLTTK--------PKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC----CSEEEECSCTTCSSCEEETGGGTCSSC--------CSSCCCCHHHHC
T ss_pred CcEE-ECCCCC----CCCeeEeeCCCCCCCCEecccCCcccC--------CCCCEECcCccC
Confidence 3578 898864 357999999 88 6999999997532 346899999975
No 71
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.90 E-value=2.1e-06 Score=70.20 Aligned_cols=44 Identities=20% Similarity=0.717 Sum_probs=35.6
Q ss_pred cccccccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~Cdr--C~-raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
+| +|++... ..||.|+. |+ .|||..|++ +..+|.+.|+||.|..
T Consensus 12 ~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 12 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 45 6777644 47999999 66 799999999 6677889999999853
No 72
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.90 E-value=1.2e-06 Score=74.24 Aligned_cols=50 Identities=36% Similarity=0.882 Sum_probs=37.9
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
.|| +|++.|.+ +..||+||.|..|||..|+++....... ...|+|+.|+.
T Consensus 11 ~yC-iC~~~~~~--~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~-----~~~~~C~~C~~ 60 (75)
T 3kqi_A 11 VYC-VCRLPYDV--TRFMIECDACKDWFHGSCVGVEEEEAPD-----IDIYHCPNCEK 60 (75)
T ss_dssp EET-TTTEECCT--TSCEEECTTTCCEEEHHHHTCCTTTGGG-----BSSCCCHHHHH
T ss_pred eEE-ECCCcCCC--CCCEEEcCCCCCCEecccccccccccCC-----CCEEECCCCcc
Confidence 456 79887643 5689999999999999999986542211 24799999974
No 73
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.86 E-value=2.8e-06 Score=69.42 Aligned_cols=43 Identities=21% Similarity=0.718 Sum_probs=35.0
Q ss_pred cccccccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCcccCCCC
Q 005013 56 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHT 102 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~Cdr--C~-raYH~~CL~PpL~~Ip~g~W~CP~C~ 102 (719)
+| +|++... ..||.|+. |+ .|||..|++ +...|.+.|+||.|.
T Consensus 11 yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~ 56 (59)
T 3c6w_A 11 YC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCV 56 (59)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHH
T ss_pred EE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCcc
Confidence 45 6777543 47999999 87 699999999 566778999999985
No 74
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.83 E-value=3.9e-06 Score=66.52 Aligned_cols=46 Identities=33% Similarity=0.966 Sum_probs=35.5
Q ss_pred ccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 139 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 139 yC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
|| +|++.+ +++.||+|+.|..|||..|+++..+. + ...|+|+.|+.
T Consensus 6 ~C-~C~~~~---~~~~MI~Cd~C~~W~H~~Cvgi~~~~-----~--~~~~~C~~C~~ 51 (52)
T 3o7a_A 6 TC-FCMKPF---AGRPMIECNECHTWIHLSCAKIRKSN-----V--PEVFVCQKCRD 51 (52)
T ss_dssp CS-TTCCBC---TTCCEEECTTTCCEEETTTTTCCGGG-----C--CSSCCCHHHHT
T ss_pred EE-EeCCcC---CCCCEEEcCCCCccccccccCCCccc-----C--CCcEECcCCCC
Confidence 44 587754 36789999999999999999987542 1 24899999964
No 75
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.81 E-value=2.5e-06 Score=69.76 Aligned_cols=46 Identities=33% Similarity=0.916 Sum_probs=35.8
Q ss_pred ccccccccccccCCCCCCceeccC--CC-CeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 137 GNYCPVCLKVYRDSESTPMVCCDV--CQ-RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 137 ~nyC~VC~K~Y~dsdgg~MIqCD~--C~-~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
..|| +|++.+ .+.||+||. |+ .|||..|+++... +.+.|+|+.|..
T Consensus 10 ~~~C-~C~~~~----~g~mi~CD~cdC~~~wfH~~Cvgl~~~--------p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS----YGEMIGCDNPDCSIEWFHFACVGLTTK--------PRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC----CSEEEECSCTTCSSCEEETGGGTCSSC--------CSSCCCCHHHHC
T ss_pred CCEE-ECCCcC----CCCEEEeCCCCCCCceEehhcCCCCcC--------CCCCEECcCccC
Confidence 3578 798864 357999999 77 8999999996532 346899999974
No 76
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.80 E-value=3.2e-06 Score=70.49 Aligned_cols=51 Identities=29% Similarity=0.640 Sum_probs=35.2
Q ss_pred ccccccccccCCCCCCceecc--CCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 139 YCPVCLKVYRDSESTPMVCCD--VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 139 yC~VC~K~Y~dsdgg~MIqCD--~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
+| +|+.. .+.+.||+|+ .|..|||..|+++..+......+ ...|+|+.|+.
T Consensus 12 ~C-~C~~~---~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~--p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RC-ICSST---MVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEV--PPVFYCELCRL 64 (68)
T ss_dssp CC-TTCCC---SCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCC--CSSCCCHHHHH
T ss_pred Ee-ECCCC---cCCCCEEEECCCCCCCeEchhhCCCCcccccccCC--CCcEECcCccC
Confidence 46 68653 2356899999 59999999999976442221111 23799999974
No 77
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.79 E-value=4.3e-06 Score=68.96 Aligned_cols=44 Identities=23% Similarity=0.662 Sum_probs=34.9
Q ss_pred cccccccCCCCCceeecCC--CC-CcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRR--CD-AAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~Cdr--C~-raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
+| +|++... ..||.|+. |+ .|||..|++ +...|.+.|+||.|..
T Consensus 13 yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 13 YC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred EE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 45 6777543 37999999 66 999999999 4566789999999853
No 78
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.78 E-value=7.8e-06 Score=72.30 Aligned_cols=43 Identities=23% Similarity=0.566 Sum_probs=34.2
Q ss_pred cccccccCCCCCceeecCCCC---CcccccccCCCCcCCCCCCcccCC-CC
Q 005013 56 ICEICRRTGDPNKFMFCRRCD---AAYHCYCQHPPHKNVSSGPYLCPK-HT 102 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~---raYH~~CL~PpL~~Ip~g~W~CP~-C~ 102 (719)
+| +|+.... ..||.|+.|+ .|||..|++ +...|.+.|+||. |.
T Consensus 28 yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 28 YC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred EE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 45 6676544 3699999966 899999999 5667788999999 75
No 79
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.76 E-value=9.1e-06 Score=68.13 Aligned_cols=45 Identities=22% Similarity=0.551 Sum_probs=36.6
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCC
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 102 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~ 102 (719)
+| +|+.+.+...||.|+.|..|||..|++.....++ ..|+|+.|.
T Consensus 21 ~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~ 65 (68)
T 3o70_A 21 TC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR 65 (68)
T ss_dssp CS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHH
T ss_pred Ee-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCC
Confidence 45 7788776667999999999999999997655444 689999985
No 80
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.75 E-value=7.6e-06 Score=72.37 Aligned_cols=45 Identities=33% Similarity=0.848 Sum_probs=34.9
Q ss_pred ccccccccccccCCCCCCceeccCCC---CeeccCCCCCChHHHhhhccCCCCceeCCC-CC
Q 005013 137 GNYCPVCLKVYRDSESTPMVCCDVCQ---RWVHCQCDGISDEKYLQFQVDGNLQYRCPT-CR 194 (719)
Q Consensus 137 ~nyC~VC~K~Y~dsdgg~MIqCD~C~---~wFH~eCL~lsdEkye~~~id~d~~Y~Cpt-Cr 194 (719)
..|| +|.+.+ .+.||+||.|. .|||..|+++... +.+.|+|+. |+
T Consensus 26 ~~yC-iC~~~~----~g~MI~CD~c~C~~eWfH~~CVgl~~~--------p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 26 EVYC-FCRNVS----YGPMVACDNPACPFEWFHYGCVGLKQA--------PKGKWYCSKDCK 74 (90)
T ss_dssp SCCS-TTTCCC----SSSEECCCSSSCSCSCEETTTSSCSSC--------TTSCCCSSHHHH
T ss_pred CcEE-EeCCCC----CCCEEEecCCCCccccCcCccCCCCcC--------CCCCccCChhhc
Confidence 3478 898753 24799999966 8999999997532 246899999 96
No 81
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.73 E-value=1.6e-06 Score=81.20 Aligned_cols=44 Identities=18% Similarity=0.517 Sum_probs=37.8
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCC-----cCC--CCCCcccCCCC
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPH-----KNV--SSGPYLCPKHT 102 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL-----~~I--p~g~W~CP~C~ 102 (719)
+|.+|+..+ .++.|+.|+++||..|+.|++ ..+ +.+.|.|+.|.
T Consensus 59 ~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 59 QCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp SCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred cCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 788889887 899999999999999999864 233 78999999984
No 82
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.70 E-value=8.5e-06 Score=77.51 Aligned_cols=48 Identities=17% Similarity=0.567 Sum_probs=36.7
Q ss_pred ccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCccccc---c-cCCCCCCCCCCc
Q 005013 3 RLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRD---L-FHWSSWKCPSCR 55 (719)
Q Consensus 3 ~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~---~-~~~~~W~Cp~Cr 55 (719)
++|..|..+| +||.|+.|++.||..||.++..+.. + .+.+.|.|+.|.
T Consensus 64 d~C~vC~~GG-----~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 64 EQCRWCAEGG-----NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CSCSSSCCCS-----SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CeecccCCCC-----cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 4566776666 8999999999999999997654211 1 245899999994
No 83
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.67 E-value=1.2e-05 Score=65.82 Aligned_cols=48 Identities=19% Similarity=0.516 Sum_probs=35.7
Q ss_pred cccccccCCC-CCceeecCCCCCcccccccCCCCcCCC-CCCcccCCCCc
Q 005013 56 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd-~~kLL~CdrC~raYH~~CL~PpL~~Ip-~g~W~CP~C~~ 103 (719)
+|.+|+++.+ ...||.|+.|..|||..|++....... ...|+|+.|..
T Consensus 8 ~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 8 QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3445677654 357999999999999999997554432 36899999854
No 84
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.63 E-value=6.1e-06 Score=70.49 Aligned_cols=54 Identities=26% Similarity=0.545 Sum_probs=37.9
Q ss_pred cccccccccccCCCCCCceecc--CCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCD--VCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD--~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
.|| +|++.. +.+.||+|| .|..|||..|+++........ ......|+|+.|+..
T Consensus 17 ~~C-iC~~~~---~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~-~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 17 VRC-VCGNSL---ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGN-PPLPESFYCEICRLT 72 (78)
T ss_dssp CCC-SSCCCC---CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSC-SCSCSSCCCHHHHHC
T ss_pred EEe-ECCCcC---CCCCEEEECCccCCccccCEEEcccccccccc-ccCCCCEECCCCCcc
Confidence 367 688762 456899999 999999999999865421100 011358999999754
No 85
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.63 E-value=1.8e-05 Score=66.51 Aligned_cols=47 Identities=19% Similarity=0.496 Sum_probs=36.2
Q ss_pred cccccccCCCCC-ceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPN-KFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~-kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
+| +|+.+.+.. .||.|+.|..|||..|++..........|+|+.|..
T Consensus 18 ~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred Ee-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 45 578775543 699999999999999999764333457899999854
No 86
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.61 E-value=3.7e-05 Score=78.11 Aligned_cols=48 Identities=25% Similarity=0.574 Sum_probs=31.9
Q ss_pred ccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCC-ceeCCCCCC
Q 005013 139 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNL-QYRCPTCRG 195 (719)
Q Consensus 139 yC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~-~Y~CptCr~ 195 (719)
+|.+|++. .+++.||.||.|+++||..|+.+... .+ +.+ .|+|+.|..
T Consensus 176 ~C~vC~~~---~~~~~lL~CD~C~~~yH~~CL~PPL~-----~v-P~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGR---QDPDKQLMCDECDMAFHIYCLDPPLS-----SV-PSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCC---CC--CCEECSSSCCEECSCC--CCCC-----SC-CSSSCCCCGGGC-
T ss_pred CCcCCCCC---CCCCCeEEcCCCCcceeCccCCCCcc-----cC-CCCCCCCCcCCcC
Confidence 47777653 34678999999999999999984211 12 345 899999975
No 87
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.52 E-value=2.1e-05 Score=62.38 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=35.5
Q ss_pred cccccccCCCC-CceeecC-CCCCcccccccCCCCcCCCCCCcccCCCC
Q 005013 56 ICEICRRTGDP-NKFMFCR-RCDAAYHCYCQHPPHKNVSSGPYLCPKHT 102 (719)
Q Consensus 56 ~C~VC~~sgd~-~kLL~Cd-rC~raYH~~CL~PpL~~Ip~g~W~CP~C~ 102 (719)
.|-+|+++.++ ..||.|+ .|..|||..|++..........|+|+.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 34578888753 4699999 89999999999965433224789999973
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.42 E-value=3.2e-05 Score=66.08 Aligned_cols=47 Identities=23% Similarity=0.580 Sum_probs=36.1
Q ss_pred cccccccCCC-CCceeecCCCCCcccccccCCCCcCC-CCCCcccCCCCc
Q 005013 56 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNV-SSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd-~~kLL~CdrC~raYH~~CL~PpL~~I-p~g~W~CP~C~~ 103 (719)
+| +|+.+.+ ...||.|+.|..|||..|++...... ....|+|+.|..
T Consensus 14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccc
Confidence 44 7788764 45899999999999999999654332 246899999864
No 89
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.40 E-value=1.3e-05 Score=67.79 Aligned_cols=47 Identities=28% Similarity=0.698 Sum_probs=36.3
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCC-----CCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNV-----SSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~I-----p~g~W~CP~C~~ 103 (719)
+| +|+.+.+...||.|+.|..|||..|++...... ....|+|+.|..
T Consensus 18 ~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 18 YC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred EE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 45 678877656899999999999999999643321 346899999854
No 90
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.39 E-value=3e-05 Score=65.38 Aligned_cols=41 Identities=22% Similarity=0.543 Sum_probs=32.4
Q ss_pred cccCCCCCceeecCCCC---CcccccccCCCCcCCCCCCcccCCCCc
Q 005013 60 CRRTGDPNKFMFCRRCD---AAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 60 C~~sgd~~kLL~CdrC~---raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
|++... ..||.|+.|+ .|||..|++. ...|.+.|+||.|..
T Consensus 11 C~~~~~-g~MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 11 CNQVSY-GEMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCTA 54 (70)
T ss_dssp TSCCCC-SSEECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHHH
T ss_pred cCCCCC-CCEeEeCCCCCCccCCccccccc--CcCCCCCEECCCCCc
Confidence 565543 3899999975 8999999994 456788999999854
No 91
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.37 E-value=1.9e-05 Score=66.64 Aligned_cols=45 Identities=33% Similarity=0.846 Sum_probs=34.4
Q ss_pred cccccccccccCCCCCCceeccCCC---CeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQ---RWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~---~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
.||. |.+++ .+.||+||.|. .|||..|+++... +...|+|+.|..
T Consensus 7 ~yC~-C~~~~----~g~MI~CD~cdC~~~WfH~~Cvgl~~~--------p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 7 GYCI-CNQVS----YGEMVGCDNQDCPIEWFHYGCVGLTEA--------PKGKWYCPQCTA 54 (70)
T ss_dssp CCST-TSCCC----CSSEECCSCTTCSCCCEEHHHHTCSSC--------CSSCCCCHHHHH
T ss_pred eEEE-cCCCC----CCCEeEeCCCCCCccCCcccccccCcC--------CCCCEECCCCCc
Confidence 4674 87752 34899999974 8999999997542 356899999974
No 92
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.34 E-value=8.5e-05 Score=58.79 Aligned_cols=43 Identities=21% Similarity=0.492 Sum_probs=35.5
Q ss_pred ccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCC
Q 005013 59 ICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 102 (719)
Q Consensus 59 VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~ 102 (719)
+|+.+.+...||.|+.|..|||..|++.....++ ..|+|+.|.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~ 50 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR 50 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCC
Confidence 6788776668999999999999999997655443 689999874
No 93
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.34 E-value=2.5e-05 Score=87.00 Aligned_cols=51 Identities=33% Similarity=0.877 Sum_probs=39.1
Q ss_pred ccccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 137 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 137 ~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
.-|| +|++.|++ ++.||+||.|..|||..|+++..+.... ...|+|+.|+.
T Consensus 37 ~~yC-~C~~~~d~--~~~MIqCd~C~~WfH~~Cvgl~~~~~~~-----~~~~~C~~C~~ 87 (488)
T 3kv5_D 37 PVYC-VCRQPYDV--NRFMIECDICKDWFHGSCVGVEEHHAVD-----IDLYHCPNCAV 87 (488)
T ss_dssp CEET-TTTEECCT--TSCEEEBTTTCCEEEHHHHTCCGGGGGG-----EEEBCCHHHHH
T ss_pred CeEE-eCCCcCCC--CCCeEEccCCCCceeeeecCcCcccccC-----CCEEECCCCcC
Confidence 3467 89987633 5789999999999999999987553222 13799999974
No 94
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.28 E-value=6e-05 Score=64.33 Aligned_cols=47 Identities=21% Similarity=0.528 Sum_probs=35.8
Q ss_pred cccccccCCCCCceeecC--CCCCcccccccCCCCcC-----CCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKN-----VSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~Cd--rC~raYH~~CL~PpL~~-----Ip~g~W~CP~C~~ 103 (719)
+| +|+...+...||.|+ .|..|||..|++..... .....|+|+.|..
T Consensus 18 ~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 18 RC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred Ee-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 45 678875556899999 99999999999954432 1236899999864
No 95
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.27 E-value=2.2e-05 Score=65.42 Aligned_cols=47 Identities=19% Similarity=0.499 Sum_probs=35.6
Q ss_pred cccccccCCCC-CceeecC-CCCCcccccccCCCCcC------CCCCCcccCCCC
Q 005013 56 ICEICRRTGDP-NKFMFCR-RCDAAYHCYCQHPPHKN------VSSGPYLCPKHT 102 (719)
Q Consensus 56 ~C~VC~~sgd~-~kLL~Cd-rC~raYH~~CL~PpL~~------Ip~g~W~CP~C~ 102 (719)
.|.+|+++.++ ..|+.|+ .|..|||..|++..... .+...|+|+.|.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 45566887544 4799999 99999999999965421 356789999874
No 96
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.26 E-value=5.5e-05 Score=68.23 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=36.5
Q ss_pred cccccccCCCC-CceeecC-CCCCcccccccCCCCcC------CCCCCcccCCCCc
Q 005013 56 ICEICRRTGDP-NKFMFCR-RCDAAYHCYCQHPPHKN------VSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~-~kLL~Cd-rC~raYH~~CL~PpL~~------Ip~g~W~CP~C~~ 103 (719)
.|.+|+++.++ ..|+.|+ .|..|||..|++..... .+...|+||.|..
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 56667887433 4799998 99999999999965321 3567899999875
No 97
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.18 E-value=5.1e-05 Score=64.26 Aligned_cols=45 Identities=24% Similarity=0.547 Sum_probs=35.1
Q ss_pred ccccCCC-CCceeecCCCCCcccccccCCCCcCCC-CCCcccCCCCc
Q 005013 59 ICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHTK 103 (719)
Q Consensus 59 VC~~sgd-~~kLL~CdrC~raYH~~CL~PpL~~Ip-~g~W~CP~C~~ 103 (719)
+|+.+.+ ...||.|+.|..|||..|++......+ ...|+|+.|..
T Consensus 14 iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 7787754 457999999999999999996544433 35799999865
No 98
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.16 E-value=0.00015 Score=60.42 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=33.4
Q ss_pred ccccCCCCCceeecC--CCCCcccccccCCCCcCC----CCCCcccCCCCc
Q 005013 59 ICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKNV----SSGPYLCPKHTK 103 (719)
Q Consensus 59 VC~~sgd~~kLL~Cd--rC~raYH~~CL~PpL~~I----p~g~W~CP~C~~ 103 (719)
+|+...+...||.|+ .|..|||..|++...... ....|+|+.|..
T Consensus 14 ~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 14 ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 677776667899999 599999999998533221 124799999853
No 99
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.10 E-value=7.8e-05 Score=71.42 Aligned_cols=37 Identities=22% Similarity=0.708 Sum_probs=29.4
Q ss_pred CceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 17 RRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 17 eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
+.||.|+.|.++||..|++....... ....|.|+.|+
T Consensus 21 ~~mi~Cd~C~~WfH~~Cv~~~~~~~~--~~~~~~C~~C~ 57 (174)
T 2ri7_A 21 KFYIGCDRCQNWYHGRCVGILQSEAE--LIDEYVCPQCQ 57 (174)
T ss_dssp SCEEECTTTCCEEEHHHHTCCHHHHT--TCSSCCCHHHH
T ss_pred CCEeECCCCCchhChhhcCCchhhcc--CccCeecCCCc
Confidence 47999999999999999998654321 23689999984
No 100
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.10 E-value=0.00014 Score=65.20 Aligned_cols=42 Identities=36% Similarity=0.912 Sum_probs=33.8
Q ss_pred CceeccCCCCeeccCCCCCChHHHhhhcc-CCCCceeCCCCCC
Q 005013 154 PMVCCDVCQRWVHCQCDGISDEKYLQFQV-DGNLQYRCPTCRG 195 (719)
Q Consensus 154 ~MIqCD~C~~wFH~eCL~lsdEkye~~~i-d~d~~Y~CptCr~ 195 (719)
.||+||.|..|||..|+++.++.+..+.. +....|.|+.|..
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 49999999999999999987765555543 4456899999974
No 101
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=0.00055 Score=58.48 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=47.5
Q ss_pred cccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcCcceeEeeecccccc
Q 005013 656 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQKRS 717 (719)
Q Consensus 656 ~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lgk~~i~~~~~~~k~~ 717 (719)
.=.||-+|.-.|+ |+.||.++|++++.. .+..|.|+|+..|+|.+. .|+-+|..+|+.
T Consensus 9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~~~--~lrplp~~~k~~ 66 (74)
T 2equ_A 9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLKRM--HIKAMPEDAKGQ 66 (74)
T ss_dssp CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEECGG--GEECCCGGGTCC
T ss_pred CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEecHH--HCeeCChhHhhc
Confidence 3468999999997 999999999999863 459999999988877654 578888766643
No 102
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=96.98 E-value=9e-05 Score=81.77 Aligned_cols=50 Identities=38% Similarity=0.900 Sum_probs=38.9
Q ss_pred ccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 139 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 139 yC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
|| +|++.|+ +++.||+||.|..|||..|+++....... ...|+|+.|+..
T Consensus 7 yC-iC~~~~d--~~~~MIqCD~C~~WfH~~CVgi~~~~~~~-----~~~y~C~~C~~~ 56 (447)
T 3kv4_A 7 YC-LCRLPYD--VTRFMIECDMCQDWFHGSCVGVEEEKAAD-----IDLYHCPNCEVL 56 (447)
T ss_dssp ET-TTTEECC--TTSCEEECTTTCCEEEHHHHTCCHHHHTT-----EEECCCHHHHHH
T ss_pred EE-eCCCcCC--CCCCeEEcCCCCcccccccCCcCcccccC-----CCEEECCCCccc
Confidence 45 7998773 36789999999999999999987654322 247999999753
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=96.95 E-value=0.00018 Score=67.41 Aligned_cols=47 Identities=19% Similarity=0.572 Sum_probs=34.7
Q ss_pred cCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccc---cc-cCCCCCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNR---DL-FHWSSWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~---~~-~~~~~W~Cp~Cr 55 (719)
+|..|.++| +|+.|+.|++.||..||.+...+. .+ .+.+.|.|+.|.
T Consensus 59 ~C~vC~dGG-----~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 59 QCRWCAEGG-----NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp SCTTTCCCS-----EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred cCeecCCCC-----eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 466665666 899999999999999999763211 11 135889999994
No 104
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.99 E-value=0.00013 Score=63.50 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=45.8
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcCcceeEeeecccc
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQKQK 715 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lgk~~i~~~~~~~k 715 (719)
.+|-+|-..|+ |+.||.++|++|... .+..|.|+||.+|+|.+. .|+=++++|+
T Consensus 8 kvGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s--~LrPl~~~~~ 61 (81)
T 2ldm_A 8 QINEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI--HVKAFSKDQN 61 (81)
Confidence 57889999998 999999999999753 369999999999999876 4777777776
No 105
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.73 E-value=0.00027 Score=69.65 Aligned_cols=48 Identities=31% Similarity=0.720 Sum_probs=34.2
Q ss_pred cccccccCCCCC----ceeecCCCCCcccccccCCCCc------CCC-CCCcccCCCCc
Q 005013 56 ICEICRRTGDPN----KFMFCRRCDAAYHCYCQHPPHK------NVS-SGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~----kLL~CdrC~raYH~~CL~PpL~------~Ip-~g~W~CP~C~~ 103 (719)
+|.+|+++.+++ .||.|+.|..|||..|++.... ..| ...|+||.|..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~ 62 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 62 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCC
Confidence 455666665544 4999999999999999996431 112 13799999864
No 106
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.72 E-value=0.0011 Score=61.39 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=38.3
Q ss_pred CcccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhh
Q 005013 655 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTL 700 (719)
Q Consensus 655 g~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~ 700 (719)
|.+.||.||-.-|++|..||-|+|+.+ .+..++.|.||||.+.+|
T Consensus 3 ~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~~v 47 (123)
T 2g3r_A 3 MNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDV 47 (123)
T ss_dssp --CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEEEE
T ss_pred CccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCeeEe
Confidence 678999999999987668999999885 566689999999999876
No 107
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.62 E-value=0.00067 Score=76.12 Aligned_cols=41 Identities=29% Similarity=0.792 Sum_probs=33.0
Q ss_pred CCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 150 SESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 150 sdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
+.+..||+||.|..|||..|++++.+.+.. ...|+||.|..
T Consensus 53 n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~-----~~~y~Cp~C~~ 93 (528)
T 3pur_A 53 KNDFQWIGCDSCQTWYHFLCSGLEQFEYYL-----YEKFFCPKCVP 93 (528)
T ss_dssp TSTTSEEECTTTCCEEEGGGTTCCGGGTTT-----EEECCCTTTHH
T ss_pred CcCCCEEECCCCCcCCCCcCCCCChhHhcC-----CCeEECcCCcC
Confidence 346789999999999999999987654332 24799999985
No 108
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=96.57 E-value=0.0021 Score=54.09 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=40.1
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcC
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELG 703 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lg 703 (719)
=.||-+|-.-| .|+.||.++|++|.+. .+..|.|+||..|+|.+.
T Consensus 7 ~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~ 51 (67)
T 3p8d_A 7 FQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (67)
T ss_dssp CCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred cccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHH
Confidence 36899999999 9999999999999876 459999999999988764
No 109
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.53 E-value=0.0022 Score=56.33 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=41.3
Q ss_pred hCcccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcC
Q 005013 654 LGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELG 703 (719)
Q Consensus 654 lg~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lg 703 (719)
...-.||.+|.--| .|+.||.++|++|.+. .+..|.|+||..+||...
T Consensus 19 ~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~~ 66 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 66 (85)
T ss_dssp --CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred CcccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecHH
Confidence 44668999999999 9999999999999876 469999999999988764
No 110
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.41 E-value=0.0012 Score=57.88 Aligned_cols=40 Identities=23% Similarity=0.738 Sum_probs=29.2
Q ss_pred CCceEEeCcCCCcchhhhcCCCc--------cc-ccccCCCCCCCCCCc
Q 005013 16 ARRMLSCKSCGKKYHRNCLKNWA--------QN-RDLFHWSSWKCPSCR 55 (719)
Q Consensus 16 ~eeLL~Cd~CgksYH~~CL~p~~--------e~-~~~~~~~~W~Cp~Cr 55 (719)
.++|+.|..|++.||..||.... +. ........|.|+.|.
T Consensus 26 ~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 26 AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 35899999999999999997631 11 111245799999983
No 111
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=96.32 E-value=0.0016 Score=64.00 Aligned_cols=51 Identities=16% Similarity=0.406 Sum_probs=35.3
Q ss_pred ccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 005013 143 CLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 197 (719)
Q Consensus 143 C~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~ 197 (719)
|++. ...+..||+|..|.+|||..|+....... +..+..+.|.|..|..+.
T Consensus 10 CG~~--~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~--lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 10 EENG--RQLGEVELQCGICTKWFTADTFGIDTSSC--LPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp -CTT--CCTTSCEEECTTTCCEEEGGGGTCCCTTC--CTTCCSEEEECTTTSTTS
T ss_pred cCCC--CCCCceeEeeccccceecHHHhcccccCc--cccceeEEEEccccCCCC
Confidence 5553 23467899999999999999998432111 122246789999999754
No 112
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=95.87 E-value=0.0047 Score=59.39 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=40.5
Q ss_pred CcccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhh
Q 005013 655 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE 701 (719)
Q Consensus 655 g~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~ 701 (719)
|.+.||.||-..|+.++-||.|+|+.+.+.+ +..|.||||.+++|.
T Consensus 7 ~~~~iG~rVfArWsd~~yyYpG~V~~~~~~~-~Y~V~FdDG~~k~v~ 52 (156)
T 1ssf_A 7 GNSFVGLRVVAKWSSNGYFYSGKITRDVGAG-KYKLLFDDGYECDVL 52 (156)
T ss_dssp -CCSTTCEEEECSSCSSEEEEEEEEECCTTT-EEEEECTTSCEEEEE
T ss_pred CcchhccEEEEEcCCCCcccccEEEEeccCC-EEEEEEcCCCeeEee
Confidence 7789999999999999999999999985554 699999999999875
No 113
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.85 E-value=0.00096 Score=74.37 Aligned_cols=47 Identities=23% Similarity=0.566 Sum_probs=36.0
Q ss_pred cccccccCCC-CCceeecCCCCCcccccccCCCCcCCC-CCCcccCCCCc
Q 005013 56 ICEICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd-~~kLL~CdrC~raYH~~CL~PpL~~Ip-~g~W~CP~C~~ 103 (719)
+| +|+.+.+ ...|+.|+.|..|||..|++....... ...|+|+.|..
T Consensus 39 yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 39 YC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp ET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred EE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 45 7888754 457999999999999999996443322 25799999865
No 114
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.58 E-value=0.0011 Score=73.30 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=34.7
Q ss_pred ccccCCC-CCceeecCCCCCcccccccCCCCcCCC-CCCcccCCCCc
Q 005013 59 ICRRTGD-PNKFMFCRRCDAAYHCYCQHPPHKNVS-SGPYLCPKHTK 103 (719)
Q Consensus 59 VC~~sgd-~~kLL~CdrC~raYH~~CL~PpL~~Ip-~g~W~CP~C~~ 103 (719)
+|+.+.+ ...|+.|+.|..|||..|++....... ...|+|+.|..
T Consensus 9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 7787754 457999999999999999995443322 36799999864
No 115
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.44 E-value=0.0029 Score=55.60 Aligned_cols=46 Identities=17% Similarity=0.488 Sum_probs=33.3
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCC------------CcCCCCCCcccCCCC
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPP------------HKNVSSGPYLCPKHT 102 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~Pp------------L~~Ip~g~W~CP~C~ 102 (719)
.|.||..-. .+.++.|..|++.||..|+.+. +...+...|.|+.|.
T Consensus 17 ~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 17 MCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred ccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 566666433 2378999999999999998752 122356789999984
No 116
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=95.44 E-value=0.017 Score=46.53 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=40.0
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-CchhhhhcC
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG 703 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~lg 703 (719)
=.+|-.+-.-|+-|+.||.++|.++.....+..|.|.| |..|++.+.
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~ 51 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 51 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHH
Confidence 35788999999889999999999998766679999998 887776654
No 117
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=95.24 E-value=0.02 Score=47.01 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=39.2
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-CchhhhhcC
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG 703 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~lg 703 (719)
-.+|-.+...|.-|+.||.++|.++.....+..|.|.| |..|++.+.
T Consensus 9 ~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~ 56 (64)
T 4a4f_A 9 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 56 (64)
T ss_dssp CCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHH
Confidence 36899999999999999999999999866679999988 676665543
No 118
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.23 E-value=0.00098 Score=59.36 Aligned_cols=90 Identities=27% Similarity=0.679 Sum_probs=54.8
Q ss_pred CccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc------------------cccccccC
Q 005013 2 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR------------------ICEICRRT 63 (719)
Q Consensus 2 C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr------------------~C~VC~~s 63 (719)
|.||+.--... ...+..+.-..|++.||..|+..|.... -.||.|+ .|.+|...
T Consensus 10 C~IC~~~~~~~-~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~ 81 (133)
T 4ap4_A 10 CPICMDGYSEI-VQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPTCRKKINHKRYHPIYIGSGTVSCPICMDG 81 (133)
T ss_dssp CTTTCCBHHHH-HHTTCCEEEETTCCEEEHHHHHHHHTTC-------SBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCB
T ss_pred CcccChhhhCc-cccccCeEecCCCChhhHHHHHHHHHhC-------CCCCCCCCcCccccccccccCCCCCCCCCCCCc
Confidence 77776442110 0002344455899999999999886432 3799998 67777654
Q ss_pred CCC----CceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 64 GDP----NKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 64 gd~----~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
-.. ...+....|+..||..|+..-+.. ...||.|..
T Consensus 82 ~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~ 121 (133)
T 4ap4_A 82 YSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRK 121 (133)
T ss_dssp HHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCC
T ss_pred cccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCC
Confidence 221 133455678888888888753322 236776643
No 119
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=95.10 E-value=0.021 Score=45.18 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=36.0
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-CchhhhhcC
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG 703 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~lg 703 (719)
.+|-.+-.-|+.|+.||.++|.+++....+..|.|.| |..|++.+.
T Consensus 3 k~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~ 49 (54)
T 3s6w_A 3 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 49 (54)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHH
Confidence 3688888999999999999999998765668899987 777666543
No 120
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=94.85 E-value=0.027 Score=49.47 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=40.4
Q ss_pred cccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-CchhhhhcC
Q 005013 656 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG 703 (719)
Q Consensus 656 ~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~lg 703 (719)
.-.+|-.+...|..|+.||.++|.++.....+..|.|.| |..|++.|.
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~ 58 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 58 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHH
Confidence 456899999999999999999999999855679999987 777766554
No 121
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=94.71 E-value=0.033 Score=47.55 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=44.7
Q ss_pred hhhhHHHHHHhCcccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-CchhhhhcC
Q 005013 644 IMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELG 703 (719)
Q Consensus 644 ~~d~~~il~~lg~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~lg 703 (719)
++++..--....+-.+|-.+-.-|+.|+.||.++|.+++....+..|.|.| |..+++.+.
T Consensus 5 ~l~~~~~~e~~~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~ 65 (77)
T 3pnw_C 5 ILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 65 (77)
T ss_dssp ------CHHHHTTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGG
T ss_pred ccccccchhhcCCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHH
Confidence 345555555666778999999999999999999999998766678899988 777766543
No 122
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=94.60 E-value=0.012 Score=66.05 Aligned_cols=77 Identities=19% Similarity=0.386 Sum_probs=43.2
Q ss_pred CceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCC-----Ccccccccc-CCCCCceeecCCCCCcccccccCCCCcC
Q 005013 17 RRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPS-----CRICEICRR-TGDPNKFMFCRRCDAAYHCYCQHPPHKN 90 (719)
Q Consensus 17 eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~-----Cr~C~VC~~-sgd~~kLL~CdrC~raYH~~CL~PpL~~ 90 (719)
.+-..|..|++.-|..=+..-... .|.+ + .+.-+.. +++...|+.|+.|..|||..|++.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-s~kk~~~~~n~~~~mI~CD~C~~WfH~~CVgi~~~~ 79 (528)
T 3pur_A 10 KESDRCGGCGKFTHEDDLIALEEE---------KKKEKEKPLM-SKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFE 79 (528)
T ss_dssp CCSCCCTTTCCCC----------------------------CC-SCCCTTTTTTSTTSEEECTTTCCEEEGGGTTCCGGG
T ss_pred CccchhhcccCCCchhhHHHHHHH---------hhhhhhhccc-cccccccCCCcCCCEEECCCCCcCCCCcCCCCChhH
Confidence 356789999998887422210000 0111 0 1111222 2334479999999999999999965443
Q ss_pred CC-CCCcccCCCCc
Q 005013 91 VS-SGPYLCPKHTK 103 (719)
Q Consensus 91 Ip-~g~W~CP~C~~ 103 (719)
.. ...|+||.|..
T Consensus 80 a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 80 YYLYEKFFCPKCVP 93 (528)
T ss_dssp TTTEEECCCTTTHH
T ss_pred hcCCCeEECcCCcC
Confidence 32 36899999865
No 123
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=94.23 E-value=0.046 Score=46.63 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=45.3
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-CchhhhhcCcceeEeeecc
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLELGKQGVRFVPQK 713 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~lgk~~i~~~~~~ 713 (719)
-.+|..+-..|.-|+.||.++|.++.....+..|.|-| |..|++.+. .||-|+..
T Consensus 10 ~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~--~Lr~l~~~ 65 (78)
T 2d9t_A 10 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS--NIKPVQTE 65 (78)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG--GEEECCCC
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH--HeEeCCHH
Confidence 46899999999889999999999998766679999988 888888764 46666553
No 124
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=92.78 E-value=0.059 Score=41.26 Aligned_cols=44 Identities=27% Similarity=0.810 Sum_probs=29.2
Q ss_pred CCccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 1 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 1 ~C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|.||+.--..+ +..+....|++.||..|+..|... ...||.|+
T Consensus 7 ~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Ci~~w~~~-------~~~CP~Cr 50 (55)
T 1iym_A 7 ECAVCLAELEDG----EEARFLPRCGHGFHAECVDMWLGS-------HSTCPLCR 50 (55)
T ss_dssp CCTTTCCCCCTT----SCCEECSSSCCEECTTHHHHTTTT-------CCSCSSSC
T ss_pred cCccCCccccCC----CceEECCCCCCcccHHHHHHHHHc-------CCcCcCCC
Confidence 377777543322 234444579999999999988643 24688874
No 125
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=92.72 E-value=0.15 Score=42.84 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=35.7
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCch
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 697 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~ 697 (719)
-+|--|..+| +|.--|.|+|+.|...+.+-.|+|.||.+
T Consensus 15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~ 53 (66)
T 2eqj_A 15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSK 53 (66)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEE
T ss_pred cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCE
Confidence 4688899999 99999999999999988889999999975
No 126
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=92.61 E-value=0.072 Score=52.40 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=23.4
Q ss_pred ccccCCCCC-ceeecCCCCCcccccccCCCC
Q 005013 59 ICRRTGDPN-KFMFCRRCDAAYHCYCQHPPH 88 (719)
Q Consensus 59 VC~~sgd~~-kLL~CdrC~raYH~~CL~PpL 88 (719)
.|+.+++.+ .|++|.+|.+|||..|+....
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~ 39 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDT 39 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCC
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccc
Confidence 678877665 689999999999999998443
No 127
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=92.38 E-value=0.027 Score=50.32 Aligned_cols=37 Identities=19% Similarity=0.538 Sum_probs=26.9
Q ss_pred ceEEeCcCCCcchhhhcCCCcccccc----cCCCCCCCCCC
Q 005013 18 RMLSCKSCGKKYHRNCLKNWAQNRDL----FHWSSWKCPSC 54 (719)
Q Consensus 18 eLL~Cd~CgksYH~~CL~p~~e~~~~----~~~~~W~Cp~C 54 (719)
.||.|+.|..+||..|++........ .....|.||.|
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C 41 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC 41 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCC
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccc
Confidence 38999999999999999986421111 11246899998
No 128
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=91.62 E-value=0.0088 Score=53.12 Aligned_cols=96 Identities=21% Similarity=0.424 Sum_probs=54.4
Q ss_pred eeecCCCCCcccccccCCCCcCCCCCCcccCCCCccCCCCCCCCCCCCccccccCccccCCCcccccccccccccccccc
Q 005013 69 FMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYR 148 (719)
Q Consensus 69 LL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~lfvK~nyC~VC~K~Y~ 148 (719)
.+.-..|+..||..|+..-+.. .-.||.|..-. .... .. .. ........|++|...+.
T Consensus 26 ~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~------~~~~--l~--~l--------~i~~~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 26 LIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI------NHKR--YH--PI--------YIGSGTVSCPICMDGYS 83 (133)
T ss_dssp CEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBC------TTTC--EE--EC--------BCSSSSCBCTTTCCBHH
T ss_pred CeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcC------cccc--cc--cc--------ccCCCCCCCCCCCCccc
Confidence 3455589999999999743321 22777765411 1100 00 00 01122345888887664
Q ss_pred CC-CCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 149 DS-ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 149 ds-dgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
+. +....+....|.+.||..|+.. +.. ....||.|+..
T Consensus 84 ~~~~~~~~~~~~~CgH~fc~~Ci~~----~~~------~~~~CP~Cr~~ 122 (133)
T 4ap4_A 84 EIVQNGRLIVSTECGHVFCSQCLRD----SLK------NANTCPTCRKK 122 (133)
T ss_dssp HHHHTTCCEEEETTSBEEEHHHHHH----HHH------HCSBCTTTCCB
T ss_pred cccccCcceEeCCCCChhhHHHHHH----HHH------cCCCCCCCCCc
Confidence 32 1223445667999999999752 111 13689999975
No 129
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=90.41 E-value=0.078 Score=42.54 Aligned_cols=43 Identities=30% Similarity=0.780 Sum_probs=27.8
Q ss_pred CCccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 1 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 1 ~C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|.||+.--..+ ..+....|++.||..|+..|.... ..||.|+
T Consensus 16 ~C~IC~~~~~~~-----~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP~Cr 58 (69)
T 2kiz_A 16 KCTICLSILEEG-----EDVRRLPCMHLFHQVCVDQWLITN-------KKCPICR 58 (69)
T ss_dssp SBTTTTBCCCSS-----SCEEECTTSCEEEHHHHHHHHHHC-------SBCTTTC
T ss_pred CCeeCCccccCC-----CcEEEeCCCCHHHHHHHHHHHHcC-------CCCcCcC
Confidence 377776432222 334455799999999999886532 2577774
No 130
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.30 E-value=0.086 Score=45.03 Aligned_cols=46 Identities=22% Similarity=0.764 Sum_probs=28.5
Q ss_pred CCccCcCCccCCcccCCceE-Ee--CcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 1 MCRLCFVGENEGCERARRML-SC--KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 1 ~C~iC~~Ce~~Gse~~eeLL-~C--d~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|.||+.-...+ +.|+ .| .+..+.||..||..|.... ....||.|+
T Consensus 17 ~C~IC~~~~~~~----~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~-----~~~~CplCr 65 (80)
T 2d8s_A 17 ICRICHCEGDDE----SPLITPCHCTGSLHFVHQACLQQWIKSS-----DTRCCELCK 65 (80)
T ss_dssp CCSSSCCCCCSS----SCEECSSSCCSSSCCEETTHHHHHHHHH-----CCSBCSSSC
T ss_pred CCeEcCccccCC----CeeEeccccCCcCCeeCHHHHHHHHhhC-----CCCCCCCCC
Confidence 478887543222 2444 22 2335999999999997642 235677775
No 131
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.83 E-value=0.047 Score=44.73 Aligned_cols=42 Identities=26% Similarity=0.898 Sum_probs=27.7
Q ss_pred CccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 2 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 2 C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
|.||+.--..+ +.+..-.|++.||..|+..|.... ..||.|+
T Consensus 26 C~IC~~~~~~~-----~~~~~l~C~H~fh~~Ci~~w~~~~-------~~CP~Cr 67 (75)
T 1x4j_A 26 CVVCMCDFESR-----QLLRVLPCNHEFHAKCVDKWLKAN-------RTCPICR 67 (75)
T ss_dssp ETTTTEECCBT-----CEEEEETTTEEEETTHHHHHHHHC-------SSCTTTC
T ss_pred CeECCcccCCC-----CeEEEECCCCHhHHHHHHHHHHcC-------CcCcCcC
Confidence 66776432222 344555699999999999886432 3677774
No 132
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.79 E-value=0.16 Score=42.63 Aligned_cols=68 Identities=19% Similarity=0.506 Sum_probs=45.7
Q ss_pred CCccccccCccccCCCccccccccccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCC
Q 005013 115 GLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCR 194 (719)
Q Consensus 115 i~s~RW~~~~slC~aC~~lfvK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr 194 (719)
...|+|......|..|...+ ...|++|...|...+. .+.-..|.+.||..|+.. +.. ..-.||.||
T Consensus 6 ~~~w~~~~~~~~C~IC~~~~--~~~C~iC~~~~~~~~~--~~~~~~C~H~FH~~Ci~~----Wl~------~~~~CP~CR 71 (81)
T 2ecl_A 6 SGMWSWDVECDTCAICRVQV--MDACLRCQAENKQEDC--VVVWGECNHSFHNCCMSL----WVK------QNNRCPLCQ 71 (81)
T ss_dssp CCCCCCSCCCSCBTTTTBCT--TSCCTTHHHHTCTTTC--CEEEETTSCEEEHHHHHH----HTT------TCCBCTTTC
T ss_pred eEEeeecCCCCCCcccChhh--hccCcccccccCCCce--EEEeCCCCCccChHHHHH----HHH------hCCCCCCcC
Confidence 34667777777888887655 3459999887755432 333346999999999751 111 124899999
Q ss_pred CC
Q 005013 195 GE 196 (719)
Q Consensus 195 ~~ 196 (719)
..
T Consensus 72 ~~ 73 (81)
T 2ecl_A 72 QD 73 (81)
T ss_dssp CB
T ss_pred CC
Confidence 75
No 133
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=89.65 E-value=0.44 Score=39.97 Aligned_cols=45 Identities=16% Similarity=0.069 Sum_probs=40.7
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhc
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLEL 702 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~l 702 (719)
+||--|---||-|+..|++.|+++++..---.|.|-||-+|+|.-
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~~ 55 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALKE 55 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEEG
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeech
Confidence 688899999999999999999999988888999999998887753
No 134
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=89.31 E-value=0.56 Score=38.51 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=34.7
Q ss_pred ccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCch
Q 005013 659 IGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 697 (719)
Q Consensus 659 i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~ 697 (719)
.|--|-+.| +|+-.|-|+|..|+....+-.|+|+|+.+
T Consensus 6 ~GedVLarw-sDG~fYlGtI~~V~~~~~~clV~F~D~s~ 43 (58)
T 4hcz_A 6 EGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQ 43 (58)
T ss_dssp TTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTSCE
T ss_pred cCCEEEEEe-cCCCEEeEEEEEEecCCCEEEEEEcCCCe
Confidence 577789999 99999999999999998889999999976
No 135
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=88.88 E-value=0.49 Score=39.82 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=43.2
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcCcceeEeee
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVP 711 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lgk~~i~~~~ 711 (719)
+||-.|.--||-|+..|++.|+++++..---.|.|-||-+|+|.- .-|+-+|
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~~--kDIKp~~ 65 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELKE--NDIKSGP 65 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEET--TTEECCC
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEech--hccccCC
Confidence 688899999999999999999999988888999999988776643 3344443
No 136
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=88.62 E-value=0.14 Score=55.68 Aligned_cols=66 Identities=18% Similarity=0.484 Sum_probs=44.4
Q ss_pred ccccCCCccccc----------cccccccccccccCCCCCCceecc--CCCCeeccCCCCC--ChHHHhhhccCCCCcee
Q 005013 124 YTCCDACGRLFV----------KGNYCPVCLKVYRDSESTPMVCCD--VCQRWVHCQCDGI--SDEKYLQFQVDGNLQYR 189 (719)
Q Consensus 124 ~slC~aC~~lfv----------K~nyC~VC~K~Y~dsdgg~MIqCD--~C~~wFH~eCL~l--sdEkye~~~id~d~~Y~ 189 (719)
..+|..|...|. ...||.+|. +++.+++|+ .|.+.|=..|+.. ....+..+. ....|.
T Consensus 70 v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~------~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~--~~d~W~ 141 (386)
T 2pv0_B 70 GGICAPCKDKFLDALFLYDDDGYQSYCSICC------SGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVH--AMSNWV 141 (386)
T ss_dssp SBCCHHHHHHHHTTTTCBCSSSSBCSCTTTC------CCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHH--HCSSCC
T ss_pred cchhhHHHHHHhccCcccCCCCCcccceEcC------CCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhh--ccCCce
Confidence 456666655333 234699997 478999999 9999999999862 222222221 245799
Q ss_pred CCCCCCCC
Q 005013 190 CPTCRGEC 197 (719)
Q Consensus 190 CptCr~~~ 197 (719)
|-.|....
T Consensus 142 Cf~C~p~p 149 (386)
T 2pv0_B 142 CYLCLPSS 149 (386)
T ss_dssp CTTTSSCC
T ss_pred EEEcCCcc
Confidence 99998753
No 137
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.51 E-value=0.16 Score=43.08 Aligned_cols=32 Identities=31% Similarity=0.837 Sum_probs=24.2
Q ss_pred eEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 19 MLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 19 LL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
-+.|..|+..||..|+..|..... .=.||.|+
T Consensus 28 g~~C~~C~h~fH~~Ci~kWl~~~~-----~~~CP~Cr 59 (74)
T 2ct0_A 28 GQSCETCGIRMHLPCVAKYFQSNA-----EPRCPHCN 59 (74)
T ss_dssp SEECSSSCCEECHHHHHHHSTTCS-----SCCCTTTC
T ss_pred CCccCCCCchhhHHHHHHHHHhcC-----CCCCCCCc
Confidence 357889999999999999875431 13688774
No 138
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=88.49 E-value=0.13 Score=39.26 Aligned_cols=44 Identities=25% Similarity=0.737 Sum_probs=29.2
Q ss_pred CCccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 1 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 1 ~C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|.||+.--..+ +..+....|+..||..|+..|.... ..||.|+
T Consensus 7 ~C~IC~~~~~~~----~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~Cr 50 (55)
T 2ecm_A 7 GCPICLEDIHTS----RVVAHVLPCGHLLHRTCYEEMLKEG-------YRCPLCS 50 (55)
T ss_dssp SCTTTCCCCCTT----TSCEEECTTSCEEETTHHHHHHHHT-------CCCTTSC
T ss_pred cCcccChhhcCC----CcCeEecCCCCcccHHHHHHHHHcC-------CcCCCCC
Confidence 367776432111 2456667899999999999876532 4688774
No 139
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=88.36 E-value=0.087 Score=45.13 Aligned_cols=42 Identities=31% Similarity=0.820 Sum_probs=26.8
Q ss_pred CccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 2 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 2 C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
|.||+.--..+ +.+..-.|++.||..|+..|... .-.||.|+
T Consensus 43 C~IC~~~~~~~-----~~~~~l~C~H~Fh~~Ci~~wl~~-------~~~CP~Cr 84 (91)
T 2l0b_A 43 CPICCSEYVKG-----DVATELPCHHYFHKPCVSIWLQK-------SGTCPVCR 84 (91)
T ss_dssp ETTTTEECCTT-----CEEEEETTTEEEEHHHHHHHHTT-------TCBCTTTC
T ss_pred CcccChhhcCC-----CcEEecCCCChHHHHHHHHHHHc-------CCcCcCcC
Confidence 67776432222 23333359999999999988642 23677774
No 140
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=88.33 E-value=0.19 Score=41.20 Aligned_cols=43 Identities=26% Similarity=0.716 Sum_probs=26.6
Q ss_pred CCccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 1 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 1 ~C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|.||+.--..+ ..+.--.|++.||..|+..|... ...||.|+
T Consensus 17 ~C~IC~~~~~~~-----~~~~~~~C~H~fc~~Ci~~~~~~-------~~~CP~Cr 59 (78)
T 2ect_A 17 ECPVCKEDYALG-----ESVRQLPCNHLFHDSCIVPWLEQ-------HDSCPVCR 59 (78)
T ss_dssp CCTTTTSCCCTT-----SCEEECTTSCEEETTTTHHHHTT-------TCSCTTTC
T ss_pred CCeeCCccccCC-----CCEEEeCCCCeecHHHHHHHHHc-------CCcCcCcC
Confidence 377776432222 23333369999999999987642 23677764
No 141
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=88.05 E-value=0.16 Score=44.55 Aligned_cols=35 Identities=29% Similarity=0.577 Sum_probs=23.6
Q ss_pred eEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 19 MLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 19 LL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.+.-..|++.||..||..|..... ......||.|+
T Consensus 55 ~~~~~~C~H~Fh~~Ci~~wl~~~~--~~~~~~CP~CR 89 (114)
T 1v87_A 55 VGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCPSCK 89 (114)
T ss_dssp CEEESSSCCEECHHHHHHHHHHTC--CSSCCBCTTTC
T ss_pred ceecCCCCCcccHHHHHHHHHccc--CCCCCcCCCCC
Confidence 334568999999999998863211 01345788885
No 142
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=88.00 E-value=0.45 Score=41.09 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=36.2
Q ss_pred cccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCch
Q 005013 656 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 697 (719)
Q Consensus 656 ~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~ 697 (719)
+=.+|.-|-++| +|+-.|-|+|..|+....+-.|+|+|+.+
T Consensus 26 ~f~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~ 66 (79)
T 2m0o_A 26 RLWEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQ 66 (79)
T ss_dssp CCCTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCE
T ss_pred eeccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCe
Confidence 335677788999 99999999999999998899999999976
No 143
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=87.65 E-value=0.046 Score=52.96 Aligned_cols=65 Identities=18% Similarity=0.496 Sum_probs=44.3
Q ss_pred ccccCCCccccc----------cccccccccccccCCCCCCceecc--CCCCeeccCCCCC--ChHHHhhhccCCCCcee
Q 005013 124 YTCCDACGRLFV----------KGNYCPVCLKVYRDSESTPMVCCD--VCQRWVHCQCDGI--SDEKYLQFQVDGNLQYR 189 (719)
Q Consensus 124 ~slC~aC~~lfv----------K~nyC~VC~K~Y~dsdgg~MIqCD--~C~~wFH~eCL~l--sdEkye~~~id~d~~Y~ 189 (719)
..+|..|...|. ...||.+|. +++.+|.|+ .|.+.|=..|+.. ....+..+ .....|.
T Consensus 56 v~lC~~Ck~~y~e~~f~~DeDG~~~yC~wC~------~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i--~~~d~W~ 127 (159)
T 3a1b_A 56 GGMCQNCKNCFLECAYQYDDDGYQSYCTICC------GGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAA--IKEDPWN 127 (159)
T ss_dssp SEECHHHHHHHHHHTTCBCTTSSBSSCTTTS------CCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHH--HTSSSCC
T ss_pred chhhHHHHHHHhhcccccCCCCCcceeeEec------CCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHH--hccCCCE
Confidence 445666654432 334799997 478999999 8999999999862 22223322 1246899
Q ss_pred CCCCCCC
Q 005013 190 CPTCRGE 196 (719)
Q Consensus 190 CptCr~~ 196 (719)
|-.|...
T Consensus 128 Cy~C~P~ 134 (159)
T 3a1b_A 128 CYMCGHK 134 (159)
T ss_dssp CTTTCSS
T ss_pred EEecCCc
Confidence 9999865
No 144
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.62 E-value=0.09 Score=44.26 Aligned_cols=30 Identities=23% Similarity=0.888 Sum_probs=21.7
Q ss_pred eEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 19 MLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 19 LL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
++.-..|++.||..|+..|.... -.||.|+
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~~-------~~CP~CR 71 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQN-------NRCPLCQ 71 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTTC-------CBCTTTC
T ss_pred EEEeCCCCCccChHHHHHHHHhC-------CCCCCcC
Confidence 33334799999999999987532 2677774
No 145
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=87.18 E-value=0.62 Score=43.59 Aligned_cols=51 Identities=27% Similarity=0.418 Sum_probs=34.8
Q ss_pred cceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcCcceeEeeecc
Q 005013 660 GKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVPQK 713 (719)
Q Consensus 660 ~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lgk~~i~~~~~~ 713 (719)
+-.|||.- ..++||+|+|++|.+.. +.|.|+|.-...-.+.=+-||+.|..
T Consensus 5 ~~~VEV~~-~~G~~y~a~V~~v~~d~--~~V~f~n~w~~~~~vp~~~vRlpP~~ 55 (128)
T 3h8z_A 5 GLPVEVRG-SNGAFYKGFVKDVHEDS--VTIFFENNWQSERQIPFGDVRLPPPA 55 (128)
T ss_dssp TCEEEEEC-TTSCEEEEEEEEECSSE--EEEEETTCTTCCEEEEGGGEECCCCC
T ss_pred ccEEEEec-CCCCEEEEEEEEEeCCc--EEEEEccccCcceEechhhEEcCCCc
Confidence 45789988 77999999999997666 99999885321112222345665543
No 146
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=87.17 E-value=0.78 Score=42.91 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=37.2
Q ss_pred ccccceEEEEecCCC----CeeeeeEEEeecCceeEEEEecCCch---hhhhcCcceeEeeecc
Q 005013 657 DAIGKRVEVHQQSDN----SWHKGVVTDTVEGTSTLSITLDDSRV---KTLELGKQGVRFVPQK 713 (719)
Q Consensus 657 ~~i~krv~v~~~~d~----~w~~g~v~~~~~~~~~~~v~~ddg~~---~~~~lgk~~i~~~~~~ 713 (719)
=++|-.||||+..++ .|+.|+|+.+.+.- +.|.|++-+. |.++ -+.||-+++.
T Consensus 61 f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg~f--~~V~y~~~~~~~~EiV~--~~rlR~~n~~ 120 (128)
T 3h8z_A 61 ITEGDEVEVYSRANEQEPCGWWLARVRMMKGDF--YVIEYAACDATYNEIVT--LERLRPVNPN 120 (128)
T ss_dssp CCTTCEEEEEECC---CCCEEEEEEEEEEETTE--EEEEETTC----CEEEC--GGGEEECCCC
T ss_pred CCCCCEEEEEecCCCCCcCccEEEEEEEeeCCE--EEEEEcCCCCCcceEEe--hhheEeCCCC
Confidence 378999999998888 89999999999765 9999888442 2333 3455555443
No 147
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=87.03 E-value=0.09 Score=57.20 Aligned_cols=45 Identities=18% Similarity=0.470 Sum_probs=35.1
Q ss_pred cccccccCCCCCceeecC--CCCCcccccccCCCCcC------CCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCR--RCDAAYHCYCQHPPHKN------VSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~Cd--rC~raYH~~CL~PpL~~------Ip~g~W~CP~C~~ 103 (719)
+|.+|+..+ .++.|+ .|.++|=..|+...+.. .....|.|-.|..
T Consensus 95 yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 95 YCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 888888877 799999 99999999998743321 2357899988754
No 148
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.78 E-value=0.14 Score=41.60 Aligned_cols=42 Identities=31% Similarity=0.877 Sum_probs=26.5
Q ss_pred CccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 2 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 2 C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
|.||+.--..+ ..+... .|++.||..|+..|.... ..||.|+
T Consensus 18 C~IC~~~~~~~----~~~~~~-~C~H~f~~~Ci~~~~~~~-------~~CP~Cr 59 (74)
T 2ep4_A 18 CAVCLEDFKPR----DELGIC-PCKHAFHRKCLIKWLEVR-------KVCPLCN 59 (74)
T ss_dssp CSSSCCBCCSS----SCEEEE-TTTEEEEHHHHHHHHHHC-------SBCTTTC
T ss_pred CcCCCcccCCC----CcEEEc-CCCCEecHHHHHHHHHcC-------CcCCCcC
Confidence 77776543222 123322 599999999999886532 2577774
No 149
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=86.64 E-value=0.23 Score=44.53 Aligned_cols=30 Identities=20% Similarity=0.662 Sum_probs=22.0
Q ss_pred eEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 19 MLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 19 LL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.+.-..|++.||..|+..|... .-.||.|+
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~-------~~~CP~Cr 96 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKT-------RQVCPLDN 96 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTT-------CSBCSSSC
T ss_pred eEeecccCcEECHHHHHHHHHc-------CCcCcCCC
Confidence 3444489999999999998653 23688774
No 150
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.32 E-value=1.2 Score=37.45 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=35.6
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchh
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVK 698 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~ 698 (719)
-+|.-|-++| +|.-.|-|+|+.|+..+..-.|+|.|+.+-
T Consensus 11 ~eGqdVLarW-sDGlfYlGtV~kV~~~~~~ClV~FeD~s~~ 50 (68)
T 2e5p_A 11 WEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF 50 (68)
T ss_dssp CTTCEEEEEC-TTSSEEEEEEEEEETTTTEEEEEETTTEEE
T ss_pred ccCCEEEEEe-cCCcEEEeEEEEEecCCcEEEEEEccCCee
Confidence 4677889999 999999999999999888899999998763
No 151
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=85.24 E-value=0.96 Score=38.31 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=31.7
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchh
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVK 698 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~ 698 (719)
=.+|-.|-++| +|+-.|=|+|++ ..+.+..|+|+|-.+-
T Consensus 16 ~~~geDVL~rw-~DG~fYLGtIVd--~~~~~ClV~FeD~S~~ 54 (69)
T 2xk0_A 16 YALQEDVFIKC-NDGRFYLGTIID--QTSDQYLIRFDDQSEQ 54 (69)
T ss_dssp CCTTCEEEEEC-TTSCEEEEEEEE--ECSSCEEEEETTCCEE
T ss_pred cccCCeEEEEe-cCCCEEEEEEEe--cCCceEEEEecCCcce
Confidence 35788899999 999999999955 5555599999998763
No 152
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=84.59 E-value=0.13 Score=41.66 Aligned_cols=45 Identities=27% Similarity=0.669 Sum_probs=27.4
Q ss_pred CCccCcCCccCCcccCCceEEe--CcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 1 MCRLCFVGENEGCERARRMLSC--KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 1 ~C~iC~~Ce~~Gse~~eeLL~C--d~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|.||+.-. + + .-+..| .+.-+.||..||..|.... +.+.|+.|+
T Consensus 8 ~CrIC~~~~--~-~--~l~~PC~C~gs~~~~H~~Cl~~W~~~~-----~~~~C~~C~ 54 (60)
T 1vyx_A 8 VCWICNEEL--G-N--ERFRACGCTGELENVHRSCLSTWLTIS-----RNTACQICG 54 (60)
T ss_dssp EETTTTEEC--S-C--CCCCSCCCSSGGGSCCHHHHHHHHHHH-----TCSBCTTTC
T ss_pred EeEEeecCC--C-C--ceecCcCCCCchhhhHHHHHHHHHHhC-----CCCccCCCC
Confidence 378887531 1 1 124454 2444699999999997532 345677764
No 153
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=83.56 E-value=0.32 Score=42.25 Aligned_cols=41 Identities=29% Similarity=0.849 Sum_probs=29.2
Q ss_pred CccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 2 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 2 C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
|.||+.- ..+-+.|..|++.||..|+..|.... ...||.|+
T Consensus 25 C~IC~~~-------~~~p~~~~~CgH~FC~~Ci~~~~~~~------~~~CP~Cr 65 (100)
T 3lrq_A 25 CFICMEK-------LRDARLCPHCSKLCCFSCIRRWLTEQ------RAQCPHCR 65 (100)
T ss_dssp CTTTCSB-------CSSEEECTTTCCEEEHHHHHHHHHHT------CSBCTTTC
T ss_pred CccCCcc-------ccCccccCCCCChhhHHHHHHHHHHC------cCCCCCCC
Confidence 6777632 23567778999999999999876532 24677774
No 154
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=81.96 E-value=0.97 Score=36.70 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=21.1
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..+.............||.|+
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr 60 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPVCG 60 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSC
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCC
Confidence 69999999999987653211112345677764
No 155
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.54 E-value=1.5 Score=36.46 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=35.0
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCch
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 697 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~ 697 (719)
-+|--|-++| +|.-.|=|+|+.|+.....-.|+|.|+.+
T Consensus 9 ~eGqdVLarW-sDGlfYlgtV~kV~~~~~~ClV~FeD~s~ 47 (63)
T 2e5q_A 9 TEGQYVLCRW-TDGLYYLGKIKRVSSSKQSCLVTFEDNSK 47 (63)
T ss_dssp CTTCEEEEEC-TTSCEEEEEECCCCSTTSEEEEEETTSCE
T ss_pred ecCCEEEEEe-cCCCEEEEEEEEEecCCCEEEEEEccCce
Confidence 3677889999 99999999999999988889999999876
No 156
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.13 E-value=0.29 Score=38.63 Aligned_cols=47 Identities=30% Similarity=0.787 Sum_probs=29.4
Q ss_pred CCccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 1 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 1 ~C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|.||+.--... .....++.-..|++.||..|+..|... ...||.|+
T Consensus 17 ~C~IC~~~~~~~-~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~Cr 63 (69)
T 2ea6_A 17 SCPICMDGYSEI-VQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPTCR 63 (69)
T ss_dssp CCTTTCCCHHHH-TTTTCCEEECSSSCEEEHHHHHHHHHH-------CSSCTTTC
T ss_pred CCcccCcccccc-ccccCCeEeCCCCChhcHHHHHHHHHc-------CCCCCCCC
Confidence 377777542111 001245566689999999999988653 23688774
No 157
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.03 E-value=0.52 Score=37.84 Aligned_cols=28 Identities=25% Similarity=0.866 Sum_probs=20.3
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..|.... .....||.|+
T Consensus 37 ~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr 64 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGETS----CGFFKCPLCK 64 (73)
T ss_dssp TTCCEEEHHHHHHHCSSS----CSCCCCSSSC
T ss_pred CCCChhhHHHHHHHHHcC----CCCCCCCCCC
Confidence 899999999998876421 1345688774
No 158
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=80.80 E-value=1.5 Score=42.40 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=37.0
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-Cchhhhhc
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLEL 702 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~l 702 (719)
-.+|.-+-+.|+-|+.||.|.|+++..+ +..|.|-| |..+++.+
T Consensus 52 ~~~g~~c~a~~~~d~~wyRa~V~~v~~~--~~~V~~vDyG~~~~v~~ 96 (218)
T 2wac_A 52 PKRGDLVAAQFTLDNQWYRAKVERVQGS--NATVLYIDYGNKETLPT 96 (218)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEEETT--EEEEEETTTCCEEEEEG
T ss_pred CCcCCEEEEEECCCCeEEEEEEEEecCC--eEEEEEEecCCeEEEch
Confidence 4689999999988999999999999884 48888755 98887654
No 159
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.61 E-value=0.62 Score=37.66 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=18.8
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..|... ...||.|+
T Consensus 32 ~CgH~fC~~Ci~~~~~~-------~~~CP~Cr 56 (71)
T 2d8t_A 32 PCKHVFCYLCVKGASWL-------GKRCALCR 56 (71)
T ss_dssp TTTEEEEHHHHHHCTTC-------SSBCSSSC
T ss_pred cCCCHHHHHHHHHHHHC-------CCcCcCcC
Confidence 69999999999877642 24677764
No 160
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=79.91 E-value=0.55 Score=35.73 Aligned_cols=47 Identities=30% Similarity=0.615 Sum_probs=31.0
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
..|++|...+.+.+. .+....|.+.||..|+.. +. .....||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~----w~------~~~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLPRCGHGFHAECVDM----WL------GSHSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHH----TT------TTCCSCSSSCCC
T ss_pred CcCccCCccccCCCc--eEECCCCCCcccHHHHHH----HH------HcCCcCcCCCCE
Confidence 468899877655433 333446999999999742 11 114679999864
No 161
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=79.67 E-value=0.58 Score=43.87 Aligned_cols=42 Identities=24% Similarity=0.755 Sum_probs=28.2
Q ss_pred CCccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 1 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 1 ~C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|.||..- ..+-+.+..|++.||..|+..|... ....||.|+
T Consensus 56 ~C~IC~~~-------~~~p~~~~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr 97 (165)
T 2ckl_B 56 MCPICLDM-------LKNTMTTKECLHRFCADCIITALRS------GNKECPTCR 97 (165)
T ss_dssp BCTTTSSB-------CSSEEEETTTCCEEEHHHHHHHHHT------TCCBCTTTC
T ss_pred CCcccChH-------hhCcCEeCCCCChhHHHHHHHHHHh------CcCCCCCCC
Confidence 36777532 1245566689999999999987642 234677774
No 162
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=79.47 E-value=0.59 Score=45.28 Aligned_cols=47 Identities=17% Similarity=0.501 Sum_probs=33.0
Q ss_pred cCcCCccCCcccCCceEEeC--cCCCcchhhhcCCCcccc---cccCCCCCCCCCCc
Q 005013 4 LCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQNR---DLFHWSSWKCPSCR 55 (719)
Q Consensus 4 iC~~Ce~~Gse~~eeLL~Cd--~CgksYH~~CL~p~~e~~---~~~~~~~W~Cp~Cr 55 (719)
+|..|..+| +|+.|+ .|.+.|-..||.....+. .+.....|.|--|.
T Consensus 81 yC~wC~~Gg-----~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 81 YCTICCGGR-----EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SCTTTSCCS-----EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred eeeEecCCC-----eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 344444445 899999 899999999997654321 12346889988773
No 163
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=79.36 E-value=1.1 Score=40.07 Aligned_cols=67 Identities=24% Similarity=0.397 Sum_probs=35.3
Q ss_pred CCCCccCCCCCCCCCCCCccccccCccccCCCccc-cccccccccccccccCCCCCCceeccCCCCeeccCC
Q 005013 99 PKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRL-FVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQC 169 (719)
Q Consensus 99 P~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~l-fvK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eC 169 (719)
+.|..|..|+......+...-+..+.++|..|... +.....|..|.+.....+ ..|. .=.+.||..|
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e--~~~~--a~~~~~H~~C 94 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE--MTMR--VKDKVYHLEC 94 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS--EEEE--ETTEEEEGGG
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc--eeEe--eCCceECccC
Confidence 45666777776543222223334567788777643 222227888887654322 1121 1345677766
No 164
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=80.15 E-value=0.41 Score=44.21 Aligned_cols=46 Identities=24% Similarity=0.439 Sum_probs=39.7
Q ss_pred hCcccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhh
Q 005013 654 LGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLE 701 (719)
Q Consensus 654 lg~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~ 701 (719)
-|.=++|-.|++--| |+.|-+|+|..+... |...|-||||+++||.
T Consensus 54 kG~l~vG~~ve~~~~-~~~~~~~~I~~i~D~-S~YtVVFdDGD~ktLr 99 (118)
T 2lcd_A 54 KGPLRVGAIVETRTS-DGSFQEAIISKLTDA-SWYTVVFDDGDERTLR 99 (118)
Confidence 477789999999997 789999999988554 5789999999999884
No 165
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=78.07 E-value=1.4 Score=38.80 Aligned_cols=26 Identities=27% Similarity=0.779 Sum_probs=20.4
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..+... ....||.|+
T Consensus 32 ~CgH~fC~~Ci~~~~~~------~~~~CP~Cr 57 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVEK------ASLCCPFCR 57 (115)
T ss_dssp TTSCEECHHHHCCCCCT------TTSBCTTTC
T ss_pred CCCCHHhHHHHHHHHhH------CcCCCCCCC
Confidence 79999999999987642 345788874
No 166
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=77.74 E-value=1.4 Score=41.94 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=35.0
Q ss_pred CcccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-Cchhh
Q 005013 655 GKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKT 699 (719)
Q Consensus 655 g~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~ 699 (719)
..-.+|.-+-+.|+.|+.||-+.|..+.... +..|.|-| |..++
T Consensus 46 ~~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~ 90 (169)
T 3ntk_A 46 SDLKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV 90 (169)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE
T ss_pred CCCCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE
Confidence 4556899999999999999999999998754 67787744 55554
No 167
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=77.57 E-value=0.61 Score=37.04 Aligned_cols=28 Identities=21% Similarity=0.738 Sum_probs=20.5
Q ss_pred EeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 21 SCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 21 ~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
....|++.||..|+..|... ...||.|+
T Consensus 20 ~~~~C~H~fc~~Ci~~~~~~-------~~~CP~Cr 47 (68)
T 1chc_A 20 MALPCLHAFCYVCITRWIRQ-------NPTCPLCK 47 (68)
T ss_dssp EETTTTEEESTTHHHHHHHH-------SCSTTTTC
T ss_pred EecCCCCeeHHHHHHHHHhC-------cCcCcCCC
Confidence 44579999999999887642 13677774
No 168
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=77.46 E-value=1.1 Score=38.95 Aligned_cols=49 Identities=20% Similarity=0.516 Sum_probs=36.7
Q ss_pred cccccCccccCCCccccccccccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 118 VRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 118 ~RW~~~~slC~aC~~lfvK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
+.|...+..|..|...+....|||-|+.. |-.|..|.. ..|+|+.|..-
T Consensus 12 l~~~~~~~~C~~C~~~~~~~afCPeCgq~--------Le~lkACGA----------------------~~yFC~~C~~L 60 (81)
T 2jrp_A 12 LERNGDTAHCETCAKDFSLQALCPDCRQP--------LQVLKACGA----------------------VDYFCQNGHGL 60 (81)
T ss_dssp CEECSSEEECTTTCCEEEEEEECSSSCSC--------CCEEEETTE----------------------EEECCTTTTCC
T ss_pred cccCCCceECccccccCCCcccCcchhhH--------HHHHHhcCC----------------------cCeeeccCCCE
Confidence 45766777899999999999999999753 333666654 15999999764
No 169
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=77.40 E-value=2.3 Score=36.59 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=34.6
Q ss_pred cccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-Cchhhhh
Q 005013 656 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLE 701 (719)
Q Consensus 656 ~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~ 701 (719)
.-.+|.-+-+.|+-|+.||.+.|.++.+. .+..|.|-| |..+++.
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~~-~~~~V~fvDyGn~e~v~ 72 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCP 72 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEEC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEcCCCeEEEE
Confidence 34689999999999999999999999753 357777644 5555544
No 170
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=77.38 E-value=0.56 Score=45.17 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCCccCCCCCCCCCCCCccccccCccccCCCccc-cccccccccccccccCCCCCCceeccCCCCeeccCCC
Q 005013 100 KHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRL-FVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCD 170 (719)
Q Consensus 100 ~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~l-fvK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL 170 (719)
.|.+|..|+......+...-...+..+|..|... +.....|..|.+.....+ ..|. .-.+.||..|.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e--~~i~--a~~~~~H~~CF 98 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE--LVMR--AQGNVYHLKCF 98 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS--EEEE--ETTEEECGGGC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc--EEEE--cCCCEEeCCCC
Confidence 4455666765432101112223466788777643 222236888887654321 1121 22456777763
No 171
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.25 E-value=2.3 Score=37.40 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=41.3
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcCc
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGK 704 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lgk 704 (719)
-+|.=|-+.-+-||.||-|.|..++..+.-..+-||=|.++++....
T Consensus 23 k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~ 69 (85)
T 2eqk_A 23 ENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDC 69 (85)
T ss_dssp CSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTT
T ss_pred cCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccc
Confidence 47888899999999999999999999998788888999999887654
No 172
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=76.72 E-value=0.5 Score=37.66 Aligned_cols=46 Identities=30% Similarity=0.802 Sum_probs=28.6
Q ss_pred CccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 2 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 2 C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
|.||+.--... ...+..+....|++.||..|+..|.... -.||.|+
T Consensus 13 C~IC~~~~~~~-~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~Cr 58 (71)
T 3ng2_A 13 CPICMDGYSEI-VQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPTCR 58 (71)
T ss_dssp CTTTCCBHHHH-HTTTCCEEECTTSCEEEHHHHHHHHHHC-------SBCTTTC
T ss_pred CcccChhhhcc-ccccCCeEeCCCCChHhHHHHHHHHHcC-------CCCCCCC
Confidence 77776442110 0012455667899999999999886532 2577764
No 173
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.65 E-value=0.66 Score=36.42 Aligned_cols=27 Identities=26% Similarity=0.865 Sum_probs=20.3
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCC
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 54 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~C 54 (719)
.|++.||..|+..|.... .....||.|
T Consensus 37 ~CgH~fC~~Ci~~~~~~~----~~~~~CP~C 63 (63)
T 2ysj_A 37 DCGHNFCLKCITQIGETS----CGFFKCPLC 63 (63)
T ss_dssp TTSSEECHHHHHHHHHHC----SSCCCCSCC
T ss_pred CCCCcchHHHHHHHHHcC----CCCCcCcCC
Confidence 799999999999876521 134578877
No 174
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.12 E-value=0.77 Score=37.17 Aligned_cols=30 Identities=20% Similarity=0.588 Sum_probs=21.4
Q ss_pred eEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 19 MLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 19 LL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
-+.-..|++.||..|+..|... ...||.|+
T Consensus 28 p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~Cr 57 (72)
T 2djb_A 28 ATTITECLHTFCKSCIVRHFYY-------SNRCPKCN 57 (72)
T ss_dssp CEECSSSCCEECHHHHHHHHHH-------CSSCTTTC
T ss_pred cCEECCCCCHHHHHHHHHHHHc-------CCcCCCcC
Confidence 3444589999999999887642 23677774
No 175
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=76.05 E-value=2.4 Score=39.95 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=33.3
Q ss_pred CCCCccCCCCCCCCCCCCccccccCccccCCCccccccccccccccccccCCCCCCceeccCCCCeeccCC
Q 005013 99 PKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQC 169 (719)
Q Consensus 99 P~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~lfvK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eC 169 (719)
+.|..|..|+....+.. . ...+..+|..|... .-...|..|.+..... .++. ..-...||..|
T Consensus 31 ~~CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~-~f~~~C~~C~~~I~~~---~~v~-~a~~~~~H~~C 93 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERC--F-SRGESVYCKDDFFK-RFGTKCAACQLGIPPT---QVVR-RAQDFVYHLHC 93 (169)
T ss_dssp TTTSBCTTTCCBCCSCC--E-ESSSCEECHHHHHH-HHSCBCTTTCCBCCTT---SEEE-EETTEEEEGGG
T ss_pred cccCccCCCCCcCCCCC--c-ccCCeeeecccccc-cccccccccccccCCC---cEEE-EcCCceEeeCC
Confidence 45566777776554322 1 23466777766532 1234588887654322 1221 12356778777
No 176
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=75.35 E-value=2.3 Score=40.50 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCCCccCCCCCCCCCCCCccccccCccccCCCccccccccccccccccccCCCCCCceeccCCCCeeccCCC
Q 005013 99 PKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCD 170 (719)
Q Consensus 99 P~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~lfvK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL 170 (719)
+.|..|..|+....+.. . ...+..+|..|... .-...|..|.+.....+ ++. ..-...||..|.
T Consensus 85 ~~CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~-~f~~kC~~C~~~I~~~~---~v~-~a~~~~~H~~CF 148 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERC--F-SRGESVYCKDDFFK-RFGTKCAACQLGIPPTQ---VVR-RAQDFVYHLHCF 148 (182)
T ss_dssp SSTTSCTTTCCCCSSCC--E-EETTEEECHHHHHH-TTSCCCTTTCCCCCSSC---CCC-EETTEECCTTTC
T ss_pred cccCccCCCCCccCCCc--e-eECCEeeecCcccc-ccccccccCCCccCCCc---eEE-ecCCCCEEeCCC
Confidence 56677888887654432 1 23466778777532 12346888877543321 110 123567787773
No 177
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=74.77 E-value=0.61 Score=42.73 Aligned_cols=26 Identities=27% Similarity=0.810 Sum_probs=0.0
Q ss_pred CcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 23 KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 23 d~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
..|+..||..|+..|.... -.||.|+
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~-------~~CP~Cr 107 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTR-------QVCPLDN 107 (117)
T ss_dssp ---------------------------------
T ss_pred CCcCceEcHHHHHHHHHcC-------CcCCCCC
Confidence 3799999999999997642 2577764
No 178
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=74.72 E-value=2.8 Score=41.64 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=35.8
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-Cchhhhhc
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLEL 702 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~l 702 (719)
-.+|.-+-+.|. |+.||-+.|+++..+. +..|.|-| |..+++.+
T Consensus 66 ~~~G~~c~a~~~-d~~wyRa~V~~~~~~~-~~~V~~vDyGn~~~v~~ 110 (246)
T 2hqx_A 66 PRRGEFCIAKFV-DGEWYRARVEKVESPA-KIHVFYIDYGNREVLPS 110 (246)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEETT-EEEEEETTTCCEEEECG
T ss_pred CCCCCEEEEEcC-CCCEEEEEEEEEcCCC-eEEEEEEeCCCeEEEeH
Confidence 358999999998 9999999999998643 58888766 88886643
No 179
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=74.62 E-value=0.96 Score=36.96 Aligned_cols=27 Identities=26% Similarity=0.872 Sum_probs=20.0
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..|.... +...||.|+
T Consensus 33 ~CgH~fC~~Ci~~~~~~~-----~~~~CP~Cr 59 (74)
T 2yur_A 33 CCGNSYCDECIRTALLES-----DEHTCPTCH 59 (74)
T ss_dssp SSCCEECTTHHHHHHHHS-----SSSCCSSSC
T ss_pred CCCCHHHHHHHHHHHHhc-----CCCcCCCCC
Confidence 499999999998876532 234688874
No 180
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.59 E-value=1.1 Score=37.01 Aligned_cols=28 Identities=29% Similarity=0.777 Sum_probs=20.5
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..|.... .....||.|+
T Consensus 36 ~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr 63 (88)
T 2ct2_A 36 HCGHTICRQCLEKLLASS----INGVRCPFCS 63 (88)
T ss_dssp SSSCEEEHHHHHHHHHHC----SSCBCCTTTC
T ss_pred CCCChhhHHHHHHHHHcC----CCCcCCCCCC
Confidence 799999999999876532 1245788774
No 181
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=74.18 E-value=1.4 Score=38.56 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=32.4
Q ss_pred cccccccccccCCC------------CCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 138 NYCPVCLKVYRDSE------------STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 138 nyC~VC~K~Y~dsd------------gg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
..|+||...+.+.. ....+.--.|.+.||..|+.. +..... ......||.||..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~----wl~~~~-~~~~~~CP~CR~~ 91 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLA----MYCNGN-KDGSLQCPSCKTI 91 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHH----HHHHTC-CSSCCBCTTTCCB
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHH----HHHccc-CCCCCcCCCCCCc
Confidence 35888877664322 112223456999999999752 221111 1346899999964
No 182
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=73.79 E-value=1.1 Score=38.28 Aligned_cols=29 Identities=21% Similarity=0.725 Sum_probs=20.8
Q ss_pred EEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 20 LSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 20 L~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
+....|++.||..|+..|... ...||.|+
T Consensus 36 ~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~Cr 64 (99)
T 2y43_A 36 MIIPQCSHNYCSLCIRKFLSY-------KTQCPTCC 64 (99)
T ss_dssp EECTTTCCEEEHHHHHHHHTT-------CCBCTTTC
T ss_pred CEECCCCCHhhHHHHHHHHHC-------CCCCCCCC
Confidence 333579999999999887642 23677774
No 183
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=73.57 E-value=1.1 Score=48.51 Aligned_cols=55 Identities=24% Similarity=0.524 Sum_probs=35.1
Q ss_pred ccccccccccCCCCCCceecc--CCCCeeccCCCCCChHHHhhhccC----CCCceeCCCCCCC
Q 005013 139 YCPVCLKVYRDSESTPMVCCD--VCQRWVHCQCDGISDEKYLQFQVD----GNLQYRCPTCRGE 196 (719)
Q Consensus 139 yC~VC~K~Y~dsdgg~MIqCD--~C~~wFH~eCL~lsdEkye~~~id----~d~~Y~CptCr~~ 196 (719)
-|++|.-...++...+-..|+ .|.+-||..|+.. =+...... .-..-.||.|+..
T Consensus 310 ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~k---WLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEE---WFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp SCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHH---HHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred cCcccceeecCCCCCccccccCCccCCccchHHHHH---HHHhCCCccccccccCCCCCCCCCc
Confidence 599998766554555666798 8999999999741 01111000 0123579999963
No 184
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.91 E-value=1.5 Score=33.52 Aligned_cols=27 Identities=26% Similarity=1.005 Sum_probs=19.6
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCC
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 54 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~C 54 (719)
.|++.||..|+..|.... .....||.|
T Consensus 32 ~CgH~fC~~Ci~~~~~~~----~~~~~CP~C 58 (58)
T 2ecj_A 32 ECGHNFCKACITRWWEDL----ERDFPCPVC 58 (58)
T ss_dssp SSCCCCCHHHHHHHTTSS----CCSCCCSCC
T ss_pred CCCCccCHHHHHHHHHhc----CCCCCCCCC
Confidence 699999999998875421 134578876
No 185
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=72.70 E-value=3.7 Score=38.21 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=40.2
Q ss_pred hhhhHHHHHHhCcccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhh
Q 005013 644 IMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTL 700 (719)
Q Consensus 644 ~~d~~~il~~lg~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~ 700 (719)
|..-+| .+||-.+.|-.|+|-| -|+.=|.|+...... +....|.|+||.+-++
T Consensus 54 Ivs~dc--~~~GpP~~G~~V~V~W-~DG~~y~a~f~g~~~-~~~YtV~FeDgs~~~~ 106 (123)
T 2xdp_A 54 IVSRDC--LKLGPPAEGEVVQVKW-PDGKLYGAKYFGSNI-AHMYQVEFEDGSQIAM 106 (123)
T ss_dssp BCSSCH--HHHCCCCTTCEEEEEC-TTSCEEEEEEEEEEE-EEEEEEECTTSCEEEE
T ss_pred cccccc--cccCCCCCCCEEEEEc-CCCCEEeEEEeeeee-EEEEEEEECCCCeEEe
Confidence 344444 5679999999999999 678888888776533 3458899999986554
No 186
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.51 E-value=1.2 Score=38.63 Aligned_cols=28 Identities=18% Similarity=0.661 Sum_probs=20.4
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..+.... .+...||.|+
T Consensus 38 ~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr 65 (112)
T 1jm7_A 38 KCDHIFCKFCMLKLLNQK----KGPSQCPLCK 65 (112)
T ss_dssp TTSCCCCSHHHHHHHHSS----SSSCCCTTTS
T ss_pred CCCCHHHHHHHHHHHHhC----CCCCCCcCCC
Confidence 799999999998876532 1345788774
No 187
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=72.39 E-value=0.43 Score=37.09 Aligned_cols=46 Identities=30% Similarity=0.814 Sum_probs=28.0
Q ss_pred CccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 2 CRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 2 C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
|.||+.--... ......+....|++.||..|+..|... ...||.|+
T Consensus 6 C~IC~~~~~~~-~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~Cr 51 (64)
T 2xeu_A 6 CPICMDGYSEI-VQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPTCR 51 (64)
T ss_dssp CTTTCCBHHHH-HHTTCCEEEETTSCEEEHHHHHHHHHH-------CSBCTTTC
T ss_pred CCccChhhhCc-cccCCCEEeCCCCCchhHHHHHHHHHc-------CCCCCCCC
Confidence 67776542110 001234455689999999999987653 23677763
No 188
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=72.04 E-value=0.94 Score=40.48 Aligned_cols=26 Identities=27% Similarity=0.828 Sum_probs=19.8
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..+... ....||.|+
T Consensus 69 ~CgH~fC~~Ci~~~~~~------~~~~CP~Cr 94 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFRA------QVFSCPACR 94 (124)
T ss_dssp TTSCEEEHHHHHHHHHT------TCCBCTTTC
T ss_pred eCCCcccHHHHHHHHhH------CcCCCCCCC
Confidence 79999999999877541 334688774
No 189
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=71.91 E-value=1.1 Score=41.08 Aligned_cols=25 Identities=28% Similarity=1.067 Sum_probs=19.1
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..|... ...||.|+
T Consensus 70 ~CgH~fc~~Ci~~~~~~-------~~~CP~Cr 94 (138)
T 4ayc_A 70 NCAHSFCSYCINEWMKR-------KIECPICR 94 (138)
T ss_dssp TTSCEEEHHHHHHHTTT-------CSBCTTTC
T ss_pred CCCCCccHHHHHHHHHc-------CCcCCCCC
Confidence 69999999999877542 23588775
No 190
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=71.84 E-value=1.4 Score=38.45 Aligned_cols=31 Identities=19% Similarity=0.582 Sum_probs=21.9
Q ss_pred ceEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 18 RMLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 18 eLL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
+-+....|++.||..|+..|... ...||.|+
T Consensus 27 ~p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~Cr 57 (108)
T 2ckl_A 27 DATTIIECLHSFCKTCIVRYLET-------SKYCPICD 57 (108)
T ss_dssp SEEEETTTCCEEEHHHHHHHHTS-------CSBCTTTC
T ss_pred CcCEeCCCCChhhHHHHHHHHHh-------CCcCcCCC
Confidence 34555689999999999877542 24577764
No 191
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=71.14 E-value=1.6 Score=39.36 Aligned_cols=37 Identities=24% Similarity=0.608 Sum_probs=29.8
Q ss_pred cccCCCCccCCCCCCCCCCCCccccccCccccCCCccccccccccccccc
Q 005013 96 YLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLK 145 (719)
Q Consensus 96 W~CP~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~lfvK~nyC~VC~K 145 (719)
-.||.|.. .+.|..++..|..|...|.+..+||-|..
T Consensus 33 ~~CP~Cq~-------------eL~~~g~~~hC~~C~~~f~~~a~CPdC~q 69 (101)
T 2jne_A 33 LHCPQCQH-------------VLDQDNGHARCRSCGEFIEMKALCPDCHQ 69 (101)
T ss_dssp CBCSSSCS-------------BEEEETTEEEETTTCCEEEEEEECTTTCS
T ss_pred ccCccCCC-------------cceecCCEEECccccchhhccccCcchhh
Confidence 57888743 35687777789999999999999999975
No 192
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.37 E-value=0.93 Score=37.48 Aligned_cols=50 Identities=24% Similarity=0.531 Sum_probs=32.8
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
..|++|...|.+.+..+++. .|.+.||..|+.. +.... .....||.|+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~--~CgH~fC~~Ci~~----~~~~~---~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLL--HCGHTICRQCLEK----LLASS---INGVRCPFCSKI 65 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEEC--SSSCEEEHHHHHH----HHHHC---SSCBCCTTTCCC
T ss_pred CCCccCCccccccCCCeEEC--CCCChhhHHHHHH----HHHcC---CCCcCCCCCCCc
Confidence 45889988776654323332 6899999999752 11111 235899999975
No 193
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=69.99 E-value=1.6 Score=33.03 Aligned_cols=47 Identities=32% Similarity=0.692 Sum_probs=31.0
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
..|+||...+.+.+ ..+..-.|.+.||..|+.. +... ...||.|+..
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~CgH~fc~~Ci~~----~~~~------~~~CP~Cr~~ 52 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVLPCGHLLHRTCYEE----MLKE------GYRCPLCSGP 52 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEECTTSCEEETTHHHH----HHHH------TCCCTTSCCS
T ss_pred CcCcccChhhcCCC--cCeEecCCCCcccHHHHHH----HHHc------CCcCCCCCCc
Confidence 35889987664432 2344556899999999752 2211 2789999864
No 194
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=69.08 E-value=1.3 Score=39.57 Aligned_cols=68 Identities=21% Similarity=0.416 Sum_probs=40.4
Q ss_pred ccccccCccccCCCccccccccccccccccccCCC-CCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 117 SVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSE-STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 117 s~RW~~~~slC~aC~~lfvK~nyC~VC~K~Y~dsd-gg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
.|+|......|..|...+.. .|++|...+.... ....+.--.|.+.||..|+.. +.. ....||.|+.
T Consensus 30 ~w~~d~~~d~CaIC~~~~~~--~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~----Wl~------~~~~CP~Cr~ 97 (106)
T 3dpl_R 30 LWAWDIVVDNCAICRNHIMD--LCIECQANQASATSEECTVAWGVCNHAFHFHCISR----WLK------TRQVCPLDNR 97 (106)
T ss_dssp EEEESSCSCCCSSSCSCTTS--CCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHH----HHT------TCSBCSSSCS
T ss_pred EeecCCCCCCCccCChhHhC--cCchhhccccccCCccceEeecccCcEECHHHHHH----HHH------cCCcCcCCCC
Confidence 44566666778888765432 5777764322111 111233457999999999641 211 1468999997
Q ss_pred C
Q 005013 196 E 196 (719)
Q Consensus 196 ~ 196 (719)
.
T Consensus 98 ~ 98 (106)
T 3dpl_R 98 E 98 (106)
T ss_dssp B
T ss_pred c
Confidence 5
No 195
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=68.97 E-value=4.8 Score=34.30 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCCCccCCCCCCCCCCCCccccccCccccCCCccccccccccccccccccCCCCCCceeccCCCCeeccCC
Q 005013 99 PKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQC 169 (719)
Q Consensus 99 P~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~lfvK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eC 169 (719)
+.|..|..|+....+. ..-...+..+|..|... .....|..|.+.....+ ..|. .=.+.||.+|
T Consensus 31 ~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~cy~~-~~~~~C~~C~~~I~~~~--~~~~--a~~~~~H~~C 94 (101)
T 2cup_A 31 DTCFRCAKCLHPLANE--TFVAKDNKILCNKCTTR-EDSPKCKGCFKAIVAGD--QNVE--YKGTVWHKDC 94 (101)
T ss_dssp TTTCCCSSSCCCTTSS--CCEEETTEEECHHHHTT-CCCCBCSSSCCBCCSSS--CEEE--SSSCEEETTT
T ss_pred hcCCcccccCCCCCcC--eeECcCCEEEChhHhhh-hcCCccccCCCccccCC--eEEE--eCCcchHHhC
Confidence 3455577777655321 11223456677766532 12345777776643221 1221 2245677777
No 196
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=68.36 E-value=8.3 Score=36.03 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=32.0
Q ss_pred cccceEEEEecCCCCeeeeeEEEeec----CceeEEEEecCC
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVE----GTSTLSITLDDS 695 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~----~~~~~~v~~ddg 695 (719)
.||.+|.|+|+ |+.||+..|..+.. +.-+..|-|.+-
T Consensus 14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gw 54 (133)
T 1wgs_A 14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGF 54 (133)
T ss_dssp CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTT
T ss_pred CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCc
Confidence 58999999997 89999999999874 667899999853
No 197
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.06 E-value=1.3 Score=36.57 Aligned_cols=26 Identities=15% Similarity=0.494 Sum_probs=19.7
Q ss_pred CcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 23 KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 23 d~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
..|++.||..|+..|... ...||.|+
T Consensus 31 ~~CgH~fC~~Ci~~~~~~-------~~~CP~Cr 56 (81)
T 2csy_A 31 TKCRHYFCESCALEHFRA-------TPRCYICD 56 (81)
T ss_dssp CTTSCEEEHHHHHHHHHH-------CSBCSSSC
T ss_pred ccCCCHhHHHHHHHHHHC-------CCcCCCcC
Confidence 479999999999887642 23677774
No 198
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.53 E-value=1.6 Score=34.66 Aligned_cols=27 Identities=30% Similarity=0.838 Sum_probs=19.8
Q ss_pred CcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 23 KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 23 d~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
..|++.||..|+..|... ....||.|+
T Consensus 31 ~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr 57 (66)
T 2ecy_A 31 TECGHRFCESCMAALLSS------SSPKCTACQ 57 (66)
T ss_dssp CSSSCCCCHHHHHHHHTT------SSCCCTTTC
T ss_pred CCCCCHHHHHHHHHHHHh------CcCCCCCCC
Confidence 379999999999987641 234677774
No 199
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.36 E-value=1.1 Score=38.10 Aligned_cols=50 Identities=22% Similarity=0.543 Sum_probs=30.8
Q ss_pred cccccccccccCCCCCCcee---ccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVC---CDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 197 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIq---CD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~ 197 (719)
..|.||...|.+. .+++. |....++||..|+. .+.... ....||.|+...
T Consensus 16 ~~C~IC~~~~~~~--~~l~~pC~C~Gs~h~fH~~Cl~----~Wl~~~----~~~~CplCr~~~ 68 (80)
T 2d8s_A 16 DICRICHCEGDDE--SPLITPCHCTGSLHFVHQACLQ----QWIKSS----DTRCCELCKYEF 68 (80)
T ss_dssp CCCSSSCCCCCSS--SCEECSSSCCSSSCCEETTHHH----HHHHHH----CCSBCSSSCCBC
T ss_pred CCCeEcCccccCC--CeeEeccccCCcCCeeCHHHHH----HHHhhC----CCCCCCCCCCee
Confidence 4688887666433 23443 33345999999975 222221 247899999754
No 200
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=66.37 E-value=1.8 Score=35.28 Aligned_cols=26 Identities=27% Similarity=0.771 Sum_probs=19.7
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.|+..|+..|... +...||.|+
T Consensus 25 ~CgH~fc~~Ci~~~~~~------~~~~CP~C~ 50 (78)
T 1t1h_A 25 STGQTYERSSIQKWLDA------GHKTCPKSQ 50 (78)
T ss_dssp TTTEEEEHHHHHHHHTT------TCCBCTTTC
T ss_pred CCCCeecHHHHHHHHHH------CcCCCCCCc
Confidence 69999999999887642 245677774
No 201
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.15 E-value=0.91 Score=36.67 Aligned_cols=50 Identities=24% Similarity=0.581 Sum_probs=31.3
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECYQV 200 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~~qI 200 (719)
..|+||...+.+... +.--.|.+.||..|+.. +... ...||.|+..-..+
T Consensus 16 ~~C~IC~~~~~~~~~---~~~~~C~H~f~~~Ci~~----~~~~------~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE---LGICPCKHAFHRKCLIK----WLEV------RKVCPLCNMPVLQL 65 (74)
T ss_dssp CBCSSSCCBCCSSSC---EEEETTTEEEEHHHHHH----HHHH------CSBCTTTCCBCSSC
T ss_pred CCCcCCCcccCCCCc---EEEcCCCCEecHHHHHH----HHHc------CCcCCCcCcccccc
Confidence 468888877654332 21124899999999752 2221 24899999764433
No 202
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=66.01 E-value=2 Score=34.91 Aligned_cols=31 Identities=23% Similarity=0.565 Sum_probs=20.7
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..+..... .......||.|+
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~-~~~~~~~CP~Cr 66 (85)
T 2ecw_A 36 DCNHSFCRACITLNYESNR-NTDGKGNCPVCR 66 (85)
T ss_dssp TTSCCBCHHHHHHHHHHSB-CTTSCBCCTTTC
T ss_pred CCCCHHHHHHHHHHHHhcc-CCCCCCCCCCCC
Confidence 6999999999987654321 112356788774
No 203
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=65.94 E-value=3.4 Score=36.61 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=35.8
Q ss_pred cccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-Cchhhhhc
Q 005013 656 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLEL 702 (719)
Q Consensus 656 ~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~l 702 (719)
.-.+|.-+-+.|+-|+.||-++|..+.+. .+..|.|-| |..+++.+
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~ 78 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPL 78 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEeh
Confidence 34689999999988999999999999863 347777755 76666554
No 204
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=65.91 E-value=3.2 Score=47.19 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=25.0
Q ss_pred ceEEeCcCCCcchhhhcCCCcccc----------cccCCCCCCC---CCCccccccccC--CCCCceeecCCCCCccccc
Q 005013 18 RMLSCKSCGKKYHRNCLKNWAQNR----------DLFHWSSWKC---PSCRICEICRRT--GDPNKFMFCRRCDAAYHCY 82 (719)
Q Consensus 18 eLL~Cd~CgksYH~~CL~p~~e~~----------~~~~~~~W~C---p~Cr~C~VC~~s--gd~~kLL~CdrC~raYH~~ 82 (719)
+-+.|..|+-..|..|...-...- .....-.|.= +...+|..|++. +-...-+.|..|...+|..
T Consensus 64 qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~ 143 (674)
T 3pfq_A 64 QGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKR 143 (674)
T ss_dssp --------------------------------------CCCCCEECCSSCCCCSSSCSCCBBSSSCEECCSSSCCCBCSS
T ss_pred ceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCccccccchhhcCccccccCCcchhhh
Confidence 567899999999999987532100 0000012220 122377777654 3223568999999999999
Q ss_pred ccC
Q 005013 83 CQH 85 (719)
Q Consensus 83 CL~ 85 (719)
|..
T Consensus 144 C~~ 146 (674)
T 3pfq_A 144 CVM 146 (674)
T ss_dssp TTS
T ss_pred hhh
Confidence 986
No 205
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=65.17 E-value=1.9 Score=46.65 Aligned_cols=36 Identities=33% Similarity=0.869 Sum_probs=25.5
Q ss_pred CccCcCCccCCcccCCceEEeC--cCCCcchhhhcCCCcc
Q 005013 2 CRLCFVGENEGCERARRMLSCK--SCGKKYHRNCLKNWAQ 39 (719)
Q Consensus 2 C~iC~~Ce~~Gse~~eeLL~Cd--~CgksYH~~CL~p~~e 39 (719)
|.||..--..+ ..-.-..|. .|++.||..||..|..
T Consensus 311 CaICys~~l~~--g~lPdk~C~n~~C~h~FH~~CL~kWLr 348 (381)
T 3k1l_B 311 CNICFAYRLDG--GEVPLVSCDNAKCVLKCHAVCLEEWFK 348 (381)
T ss_dssp CSSSCCSSCTT--CCCCCBCCSCTTCCCCBCSGGGHHHHH
T ss_pred CcccceeecCC--CCCccccccCCccCCccchHHHHHHHH
Confidence 77887653321 112346797 9999999999999875
No 206
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.30 E-value=1.2 Score=35.62 Aligned_cols=25 Identities=28% Similarity=1.110 Sum_probs=18.5
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..|.. ....||.|+
T Consensus 31 ~CgH~fc~~Ci~~~~~-------~~~~CP~Cr 55 (70)
T 2ecn_A 31 PCAHSFCQKCIDKWSD-------RHRNCPICR 55 (70)
T ss_dssp TTTEEECHHHHHHSSC-------CCSSCHHHH
T ss_pred CCCCcccHHHHHHHHH-------CcCcCCCcC
Confidence 6999999999988764 224566663
No 207
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.72 E-value=2.5 Score=35.77 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=21.6
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCC
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHP 86 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~P 86 (719)
.|.+|.....+ -+.|..|...||..|+..
T Consensus 17 ~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 17 ICNICHSLLIQ--GQSCETCGIRMHLPCVAK 45 (74)
T ss_dssp BCSSSCCBCSS--SEECSSSCCEECHHHHHH
T ss_pred cCcchhhHccc--CCccCCCCchhhHHHHHH
Confidence 56666655542 367889999999999984
No 208
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.94 E-value=1.9 Score=35.11 Aligned_cols=31 Identities=26% Similarity=0.698 Sum_probs=19.8
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.||..|+..+..... .......||.|+
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~-~~~~~~~CP~Cr 66 (85)
T 2ecv_A 36 DCGHSFCQACLTANHKKSM-LDKGESSCPVCR 66 (85)
T ss_dssp SSSCCBCTTHHHHHHHHHH-HTTSCCCCTTTC
T ss_pred CCCCHHHHHHHHHHHHHhh-cCCCCCcCCCCC
Confidence 6999999999987654210 011345677774
No 209
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=62.87 E-value=3.8 Score=39.34 Aligned_cols=12 Identities=33% Similarity=1.184 Sum_probs=6.2
Q ss_pred CCCccccccccC
Q 005013 52 PSCRICEICRRT 63 (719)
Q Consensus 52 p~Cr~C~VC~~s 63 (719)
+.|-.|..|+.+
T Consensus 32 ~~CF~C~~C~~~ 43 (192)
T 1b8t_A 32 KSCFLCMVCKKN 43 (192)
T ss_dssp TTTCBCTTTCCB
T ss_pred CCCCcCcccCCc
Confidence 455555555543
No 210
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=62.64 E-value=8.8 Score=35.50 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=38.3
Q ss_pred hhhhHHHHHHhCcccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhh
Q 005013 644 IMDANWILKKLGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTL 700 (719)
Q Consensus 644 ~~d~~~il~~lg~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~ 700 (719)
|..-+| .+||-.+.|-+|+|-| -|+.=|.++...... +....|.|+||.+-++
T Consensus 53 Ivs~dc--~~~GpP~~G~~V~V~W-~DG~~y~a~f~g~~~-~~~Y~V~feDgs~~~~ 105 (118)
T 2qqr_A 53 IVSQDC--LQFGPPAEGEVVQVRW-TDGQVYGAKFVASHP-IQMYQVEFEDGSQLVV 105 (118)
T ss_dssp BCSSCH--HHHCCCCTTCEEEEEC-TTSCEEEEEEEEEEE-EEEEEEEETTSCEEEE
T ss_pred cccccc--cccCCCCCCCEEEEEc-CCCCEeeeEEeceeE-EEEEEEEECCCCEEEE
Confidence 344445 5779999999999999 566677777665322 2358899999996443
No 211
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.45 E-value=7.8 Score=33.97 Aligned_cols=35 Identities=29% Similarity=0.805 Sum_probs=28.0
Q ss_pred cCCceEEeCcCC-CcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 15 RARRMLSCKSCG-KKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 15 ~~eeLL~Cd~Cg-ksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
..-+||.|..|+ ..-|..|...... ...|.|..|.
T Consensus 42 ~~W~L~lC~~Cgs~gtH~~Cs~l~~~------~~~weC~~C~ 77 (85)
T 1weq_A 42 GRWRLILCATCGSHGTHRDCSSLRPN------SKKWECNECL 77 (85)
T ss_dssp STTBCEECSSSCCCEECSGGGTCCTT------CSCCCCTTTS
T ss_pred CCEEEEeCcccCCchhHHHHhCCcCC------CCCEECCcCc
Confidence 356899999999 8899999986432 2679999884
No 212
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=60.32 E-value=9.2 Score=38.65 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=36.9
Q ss_pred CcccccceEEEEecCCCCeeeeeEEEeec--CceeEEEEecCCchhhhh
Q 005013 655 GKDAIGKRVEVHQQSDNSWHKGVVTDTVE--GTSTLSITLDDSRVKTLE 701 (719)
Q Consensus 655 g~~~i~krv~v~~~~d~~w~~g~v~~~~~--~~~~~~v~~ddg~~~~~~ 701 (719)
|+=.||-||-.-| -++.||+|+|+++.. ..-+..|.|||+..+.|.
T Consensus 7 ~~l~Vg~~vlg~k-~~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~ivs 54 (213)
T 3dlm_A 7 GDLIVSMRILGKK-RTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLS 54 (213)
T ss_dssp TTEETTCEEEEEC-TTSBEEEEEEEEEEEETTEEEEEEEESSSCEEEEC
T ss_pred CcEEEccEEEEEe-cCCcEEEEEEEEEEECCCCeEEEEEEcCCCCEEee
Confidence 4557999999999 569999999999855 456799999977666544
No 213
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=60.18 E-value=3.7 Score=35.70 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=16.0
Q ss_pred CCceeccC--CCCeeccCCCC
Q 005013 153 TPMVCCDV--CQRWVHCQCDG 171 (719)
Q Consensus 153 g~MIqCD~--C~~wFH~eCL~ 171 (719)
+-.|+|.. |..+||+.|..
T Consensus 29 GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 29 GASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp SCEEECSCTTTCCEEEHHHHH
T ss_pred cEeEecCCCCCCCcCcHHHHH
Confidence 56789976 99999999964
No 214
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=59.75 E-value=2.6 Score=39.54 Aligned_cols=27 Identities=26% Similarity=0.774 Sum_probs=20.4
Q ss_pred CcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 23 KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 23 d~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
..|+..||..|+..+... ....||.|+
T Consensus 94 ~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr 120 (150)
T 1z6u_A 94 TECFHNVCKDCLQRSFKA------QVFSCPACR 120 (150)
T ss_dssp CTTSCEEEHHHHHHHHHT------TCCBCTTTC
T ss_pred cCCCCchhHHHHHHHHHh------CCCcCCCCC
Confidence 489999999999877642 335688774
No 215
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=56.90 E-value=2.8 Score=35.21 Aligned_cols=27 Identities=26% Similarity=0.872 Sum_probs=19.1
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|++.|+..|+..+.... +...||.|+
T Consensus 31 ~CgH~fC~~Ci~~~~~~~-----~~~~CP~Cr 57 (92)
T 3ztg_A 31 CCGNSYCDECIRTALLES-----DEHTCPTCH 57 (92)
T ss_dssp TTCCEECHHHHHHHHHHC-----TTCCCTTTC
T ss_pred CCCCHHHHHHHHHHHHhc-----CCCcCcCCC
Confidence 499999999998765321 235788774
No 216
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.86 E-value=3.4 Score=33.53 Aligned_cols=50 Identities=22% Similarity=0.475 Sum_probs=30.5
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 197 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~ 197 (719)
..|++|...+.+ +++. .|.+.||..|+.. +............||.|+..-
T Consensus 20 ~~C~IC~~~~~~----p~~~--~CgH~fC~~Ci~~----~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 20 VTCPICLELLTQ----PLSL--DCGHSFCQACLTA----NHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCTTTCSCCSS----CBCC--SSSCCBCTTHHHH----HHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCcccCC----ceeC--CCCCHHHHHHHHH----HHHHhhcCCCCCcCCCCCCcc
Confidence 458888876643 2221 6899999999752 111111113368999999753
No 217
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=55.91 E-value=2.8 Score=38.37 Aligned_cols=68 Identities=22% Similarity=0.390 Sum_probs=4.1
Q ss_pred ccccccCccccCCCccccccccccccccccccCCCC-CCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCC
Q 005013 117 SVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSES-TPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRG 195 (719)
Q Consensus 117 s~RW~~~~slC~aC~~lfvK~nyC~VC~K~Y~dsdg-g~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~ 195 (719)
.|+|......|..|...+.. -|.+|.-.+....+ .-.+.--.|.+.||..|+..- .. ....||.|+.
T Consensus 41 ~w~wd~~~d~CaICl~~~~~--~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~W----l~------~~~~CP~Cr~ 108 (117)
T 4a0k_B 41 LWAWDIVVDNCAICRNHIMD--LCIECQANQASATSEECTVAWGVCNHAFHFHCISRW----LK------TRQVCPLDNR 108 (117)
T ss_dssp EEEECCCC------------------------------------------------------------------------
T ss_pred EEeecCCCCcCeECChhhcC--cChhhhcccccccccccccccCCcCceEcHHHHHHH----HH------cCCcCCCCCC
Confidence 34455555667777654432 45666532211111 112223469999999998631 10 1467999997
Q ss_pred C
Q 005013 196 E 196 (719)
Q Consensus 196 ~ 196 (719)
.
T Consensus 109 ~ 109 (117)
T 4a0k_B 109 E 109 (117)
T ss_dssp -
T ss_pred e
Confidence 5
No 218
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=54.84 E-value=24 Score=29.98 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=36.8
Q ss_pred cccceEEEEec--CCCCeeeeeEEEeec--CceeEEEEecCCchhhhhcCcceeEeeeccc
Q 005013 658 AIGKRVEVHQQ--SDNSWHKGVVTDTVE--GTSTLSITLDDSRVKTLELGKQGVRFVPQKQ 714 (719)
Q Consensus 658 ~i~krv~v~~~--~d~~w~~g~v~~~~~--~~~~~~v~~ddg~~~~~~lgk~~i~~~~~~~ 714 (719)
.||-+|.|+|+ .++.||+..|.++.. +.-+..|-|.+-. +.==||||.-+
T Consensus 7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwn-------kr~DEWV~~~r 60 (76)
T 2lcc_A 7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWN-------VRYDEWVKADR 60 (76)
T ss_dssp STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSC-------CSSCEEEEGGG
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcC-------CCceEecChhh
Confidence 68999999998 347999999999865 3446789998632 22237887654
No 219
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=53.99 E-value=14 Score=35.67 Aligned_cols=52 Identities=13% Similarity=0.334 Sum_probs=36.7
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEe-cCCchhhhhcCcceeEeee
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITL-DDSRVKTLELGKQGVRFVP 711 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~-ddg~~~~~~lgk~~i~~~~ 711 (719)
-.+|.-+-+.++.|+.||-|.|.++.+.. +..|.| |=|..+++.+. .||-++
T Consensus 66 ~~~G~~c~a~~~~d~~wyRa~V~~~~~~~-~~~V~~vDyG~~~~v~~~--~l~~l~ 118 (201)
T 4b9w_A 66 AEIGRPCCAFFSGDGNWYRALVKEILPSG-NVKVHFVDYGNVEEVTTD--QLQAIL 118 (201)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECTTS-CEEEEETTTCCEEEECGG--GEEECC
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCCC-eEEEEEEccCCEEEEEHH--HhccCh
Confidence 45788899999999999999999997543 366665 44666655432 355444
No 220
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=53.69 E-value=4.4 Score=34.12 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=17.8
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.||+.|+..|+..... .....||.|+
T Consensus 32 ~CGH~fC~~Cl~~~~~------~~~~~CP~CR 57 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRT------DENGLCPACR 57 (78)
T ss_dssp TTSCCCCHHHHHHHTT------SSCSBCTTTC
T ss_pred CCCCCcCHHHHHHHHh------cCCCCCCCCC
Confidence 5999999999864321 1345777774
No 221
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.29 E-value=2.4 Score=33.24 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=32.0
Q ss_pred cccccccccccCC-CCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 138 NYCPVCLKVYRDS-ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 138 nyC~VC~K~Y~ds-dgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
..|+||...+.+. ....++.--.|.+.||..|+.. +... ...||.|+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~----~~~~------~~~CP~Cr~~ 65 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD----SLKN------ANTCPTCRKK 65 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHH----HHHH------CSSCTTTCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHH----HHHc------CCCCCCCCCc
Confidence 4588888776432 2234445567999999999752 1111 3589999964
No 222
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=53.27 E-value=8 Score=36.76 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=10.2
Q ss_pred CCcccCCCCccCCCCCCC
Q 005013 94 GPYLCPKHTKCHSCGSNV 111 (719)
Q Consensus 94 g~W~CP~C~~C~sCg~r~ 111 (719)
+.++.+.|..|..|+...
T Consensus 140 ~~~~H~~CF~C~~C~~~L 157 (182)
T 2jtn_A 140 DFVYHLHCFACVVCKRQL 157 (182)
T ss_dssp TEECCTTTCCCTTTCCCC
T ss_pred CCCEEeCCCcCCCCCCCC
Confidence 334456666666666543
No 223
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=52.93 E-value=5.4 Score=40.39 Aligned_cols=31 Identities=32% Similarity=0.876 Sum_probs=23.5
Q ss_pred eEEeCcCCCcchhhhcCCCcccccccCCCCCCCCCC
Q 005013 19 MLSCKSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 54 (719)
Q Consensus 19 LL~Cd~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~C 54 (719)
-+.|..|+..||..|+..+.... ..-.||.|
T Consensus 193 g~~C~~C~~~~H~~C~~~~~~~~-----~~~~CP~C 223 (238)
T 3nw0_A 193 GQSCETCGIRMHLPCVAKYFQSN-----AEPRCPHC 223 (238)
T ss_dssp CEECSSSCCEECHHHHHHHTTTC-----SSCBCTTT
T ss_pred CcccCccChHHHHHHHHHHHHhC-----CCCCCCCC
Confidence 47899999999999998775432 23468876
No 224
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.66 E-value=4.1 Score=32.06 Aligned_cols=27 Identities=22% Similarity=0.658 Sum_probs=19.4
Q ss_pred CcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 23 KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 23 d~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
..||+.||..|+..+... ....||.|+
T Consensus 24 ~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr 50 (65)
T 1g25_A 24 NVCGHTLCESCVDLLFVR------GAGNCPECG 50 (65)
T ss_dssp CTTCCCEEHHHHHHHHHT------TSSSCTTTC
T ss_pred CCCCCHhHHHHHHHHHHc------CCCcCCCCC
Confidence 479999999999876432 234677763
No 225
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=52.16 E-value=3.2 Score=38.81 Aligned_cols=46 Identities=26% Similarity=0.631 Sum_probs=31.7
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 197 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~ 197 (719)
..|+||...+.+ .+.+..|.+.||..|+.. +.. .....||.|+...
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~----~~~-----~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIIT----ALR-----SGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHH----HHH-----TTCCBCTTTCCBC
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHH----HHH-----hCcCCCCCCCCcC
Confidence 359999876543 345568999999999752 211 1257899999754
No 226
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=52.02 E-value=2 Score=34.13 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=32.4
Q ss_pred cccccccccccCC-CCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 138 NYCPVCLKVYRDS-ESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 138 nyC~VC~K~Y~ds-dgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
..|++|...+.+. ..+..+..-.|.+.||..|+.. +... ...||.|+..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~----~~~~------~~~CP~Cr~~ 60 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD----SLKN------ANTCPTCRKK 60 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHH----HHHH------CSBCTTTCCB
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHH----HHHc------CCCCCCCCCc
Confidence 3588888776442 2334455668999999999752 1111 2589999975
No 227
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=51.68 E-value=8.5 Score=34.13 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=33.2
Q ss_pred CCCCccCCCCCCCCCCCCccccccCccccCCCccccccccccccccccccCCCCCCceeccCCCCeec--cCC
Q 005013 99 PKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVH--CQC 169 (719)
Q Consensus 99 P~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~lfvK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH--~eC 169 (719)
+.|..|..|+....+. ..-...+.++|..|... .....|..|.+...+.+ ..|. .-.+.|| ..|
T Consensus 28 ~~CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~-~~~~~C~~C~~~I~~~~--~~~~--a~~~~~H~~~~C 93 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGE--IYVMVNDKPVCKPCYVK-NHAVVCQGCHNAIDPEV--QRVT--YNNFSWHASTEC 93 (126)
T ss_dssp GGGSBCTTTCCBCTTS--EEEEETTEEEEHHHHHH-HSCCBCTTTCSBCCTTS--CEEE--ETTEEEESSTTT
T ss_pred CCCCCcCCCCCCCCcC--EEEeECCEEechHHhCc-CcCccCcccCCcCCcCc--eEEE--CCCCEeeCCCCC
Confidence 3455577777654431 11123456777777532 12345888887654321 1121 2346677 666
No 228
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.28 E-value=7.8 Score=34.23 Aligned_cols=15 Identities=20% Similarity=0.685 Sum_probs=12.6
Q ss_pred cCCCcchhhhcCCCc
Q 005013 24 SCGKKYHRNCLKNWA 38 (719)
Q Consensus 24 ~CgksYH~~CL~p~~ 38 (719)
.|++.|+..|+..+.
T Consensus 40 ~CgH~fC~~Ci~~~~ 54 (117)
T 1jm7_B 40 GCEHIFCSNCVSDCI 54 (117)
T ss_dssp SSSCCBCTTTGGGGT
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999998764
No 229
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=51.17 E-value=16 Score=34.96 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=29.3
Q ss_pred ccccceEEEEe--cCCC-CeeeeeEEEeecCceeEEEEecC
Q 005013 657 DAIGKRVEVHQ--QSDN-SWHKGVVTDTVEGTSTLSITLDD 694 (719)
Q Consensus 657 ~~i~krv~v~~--~~d~-~w~~g~v~~~~~~~~~~~v~~dd 694 (719)
-++|+.|+|.. |.++ ..++|++.++++++ +.+.+++
T Consensus 101 r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~--v~l~~~~ 139 (164)
T 1ib8_A 101 GAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE--LTMEYMD 139 (164)
T ss_dssp HHCSEEEEEECSSCSSSCSEEEEEEEEEETTE--EEEEEEC
T ss_pred HhCCcEEEEEEecccCCceEEEEEEEEEeCCE--EEEEEec
Confidence 46888888865 6666 88999999999988 7777775
No 230
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=50.50 E-value=7.9 Score=36.37 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=10.5
Q ss_pred CCcccCCCCccCCCCCCC
Q 005013 94 GPYLCPKHTKCHSCGSNV 111 (719)
Q Consensus 94 g~W~CP~C~~C~sCg~r~ 111 (719)
+..+.+.|..|..|+...
T Consensus 86 ~~~~H~~CF~C~~C~~~L 103 (169)
T 2rgt_A 86 DFVYHLHCFACVVCKRQL 103 (169)
T ss_dssp TEEEEGGGCBCTTTCCBC
T ss_pred CceEeeCCCcCCCCCCCC
Confidence 334445666677776543
No 231
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=50.46 E-value=32 Score=30.94 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=36.4
Q ss_pred cccceEEEEecCCCCeeeeeEEEee--cCceeEEEEecCCchhhhhcCcceeEeeecc
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTV--EGTSTLSITLDDSRVKTLELGKQGVRFVPQK 713 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~--~~~~~~~v~~ddg~~~~~~lgk~~i~~~~~~ 713 (719)
.||-+|.|++ ++.||+..|.++. .+.-+..|-|.+-.. .+| ||||.-
T Consensus 24 ~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNk-R~D------EWV~~~ 72 (102)
T 2f5k_A 24 QEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWNK-NWD------EWVPES 72 (102)
T ss_dssp CTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSCG-GGC------EEEEGG
T ss_pred CCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCC-Cce------eeccHh
Confidence 5899999999 8999999999986 455679999986432 333 787753
No 232
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=49.81 E-value=22 Score=29.21 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=30.5
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCc
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSR 696 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~ 696 (719)
.||-|||+--+.. .||..+|+.|+.....+.|.||.=.
T Consensus 14 ~vGmkLEa~d~~~-p~~~AtV~~v~~~~~~~~VhfdGw~ 51 (69)
T 3sd4_A 14 EVGAQLEARDRLK-NWYPAHIEDIDYEEGKVLIHFKRWN 51 (69)
T ss_dssp STTCEEEEECTTS-CEEEEEEEEEETTTTEEEEEETTSC
T ss_pred CCCCEEEEEECCC-CccccEEEEEeccCCEEEEEeCCCC
Confidence 5899999987554 4799999999766677999998643
No 233
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=49.23 E-value=25 Score=30.65 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=32.1
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCc
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSR 696 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~ 696 (719)
.||-+||+.- ..+.||..+|+.++....++.|.||.=.
T Consensus 21 ~vGmkLEA~D-~~~~~~~a~i~~v~~~~~~v~VHfdGW~ 58 (88)
T 2eqm_A 21 EIGARLEALD-YLQKWYPSRIEKIDYEEGKMLVHFERWS 58 (88)
T ss_dssp CSSCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEESSST
T ss_pred CCCCEEEEEc-CCCCeeEEEEEEEeccCCEEEEEECCCC
Confidence 4899999986 4578999999999877778999999664
No 234
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=49.13 E-value=6.9 Score=33.94 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=30.5
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 198 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~~ 198 (719)
-.|++|...+.+ .+....|.+.||..|+.. +.. ....||.|+..-.
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~----~~~------~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIVR----YLE------TSKYCPICDVQVH 61 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHHH----HHT------SCSBCTTTCCBSC
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHHH----HHH------hCCcCcCCCcccc
Confidence 358888876533 244457999999999741 111 1378999997643
No 235
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.10 E-value=5.5 Score=32.33 Aligned_cols=44 Identities=20% Similarity=0.383 Sum_probs=24.4
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
.|.||...-.....+.-..|+..||..|+..-+. ....||.|..
T Consensus 17 ~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~----~~~~CP~Cr~ 60 (78)
T 2ect_A 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE----QHDSCPVCRK 60 (78)
T ss_dssp CCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT----TTCSCTTTCC
T ss_pred CCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH----cCCcCcCcCC
Confidence 3444554433223333335899999999874322 1246777754
No 236
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=48.82 E-value=5.3 Score=40.48 Aligned_cols=43 Identities=23% Similarity=0.471 Sum_probs=29.3
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCC
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHT 102 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~ 102 (719)
.|.+|..--- .-..|..|+..||..|+...... ...-.||.|.
T Consensus 182 ~C~iC~~iv~--~g~~C~~C~~~~H~~C~~~~~~~--~~~~~CP~C~ 224 (238)
T 3nw0_A 182 ICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCN 224 (238)
T ss_dssp BCTTTCSBCS--SCEECSSSCCEECHHHHHHHTTT--CSSCBCTTTC
T ss_pred cCcchhhHHh--CCcccCccChHHHHHHHHHHHHh--CCCCCCCCCC
Confidence 6777776554 34889999999999999743221 2344677663
No 237
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=48.41 E-value=20 Score=31.48 Aligned_cols=35 Identities=29% Similarity=0.241 Sum_probs=28.1
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCc-eeEEEEe
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGT-STLSITL 692 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~-~~~~v~~ 692 (719)
.-|||.|+|-. +|+.=|.|+|..||--+ +=.+++.
T Consensus 14 ~li~KeV~V~l-~dg~~y~G~l~tvDp~s~sIvL~n~ 49 (86)
T 1y96_A 14 DYIYKEVRVTA-SEKNEYKGWVLTTDPVSANIVLVNF 49 (86)
T ss_dssp HTTTCEEEEEE-TTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred hhcCCEEEEEE-cCCCEEEEEEEEECCCceEEEEeec
Confidence 56999999998 99999999999999444 4444443
No 238
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.33 E-value=1.7 Score=35.28 Aligned_cols=44 Identities=18% Similarity=0.460 Sum_probs=26.8
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
.|.+|...-.....+....|+..||..|+..-+.. ...||.|..
T Consensus 25 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~ 68 (75)
T 1x4j_A 25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRA 68 (75)
T ss_dssp EETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCC
T ss_pred CCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCC
Confidence 45566654433344555569999999999843321 236777753
No 239
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.59 E-value=16 Score=31.90 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=33.6
Q ss_pred cccceEEEEec---CCCCeeeeeEEEeec--CceeEEEEecCCch
Q 005013 658 AIGKRVEVHQQ---SDNSWHKGVVTDTVE--GTSTLSITLDDSRV 697 (719)
Q Consensus 658 ~i~krv~v~~~---~d~~w~~g~v~~~~~--~~~~~~v~~ddg~~ 697 (719)
.||-+|.|+.+ .++.||+..|.++.. +.-...|-|.+-..
T Consensus 11 ~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~Nk 55 (87)
T 2eko_A 11 IEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNR 55 (87)
T ss_dssp CTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCS
T ss_pred cCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCc
Confidence 68999999997 599999999999865 45579999987654
No 240
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=47.15 E-value=10 Score=43.09 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=0.0
Q ss_pred cccccccC--CCCCceeecCCCCCcccccccC
Q 005013 56 ICEICRRT--GDPNKFMFCRRCDAAYHCYCQH 85 (719)
Q Consensus 56 ~C~VC~~s--gd~~kLL~CdrC~raYH~~CL~ 85 (719)
+|..|+.. |--..-+.|..|....|..|..
T Consensus 50 ~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~ 81 (674)
T 3pfq_A 50 FCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHE 81 (674)
T ss_dssp --------------------------------
T ss_pred ccccccccccccCCceeECCCCCCCcChhhcC
Confidence 56666643 1112458899999999999976
No 241
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=46.50 E-value=2.6 Score=33.49 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=25.1
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
.|.+|...-.....+....|+..||..|+..-+.. ...||.|..
T Consensus 16 ~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~ 59 (69)
T 2kiz_A 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRV 59 (69)
T ss_dssp SBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCS
T ss_pred CCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCc
Confidence 34445443332233444569999999999743222 225887754
No 242
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=45.77 E-value=5.7 Score=34.84 Aligned_cols=27 Identities=33% Similarity=0.711 Sum_probs=19.9
Q ss_pred CcCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 23 KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 23 d~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
..|+..||..|+..|... ....||.|+
T Consensus 39 ~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr 65 (116)
T 1rmd_A 39 TSCKHLFCRICILRCLKV------MGSYCPSCR 65 (116)
T ss_dssp CTTSCEEEHHHHHHHHHH------TCSBCTTTC
T ss_pred cCCCCcccHHHHHHHHhH------CcCcCCCCC
Confidence 489999999999887643 123677774
No 243
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=45.64 E-value=3.5 Score=35.60 Aligned_cols=44 Identities=27% Similarity=0.692 Sum_probs=31.0
Q ss_pred ccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCC
Q 005013 139 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGE 196 (719)
Q Consensus 139 yC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~ 196 (719)
.|++|...+.+ .+.|..|.+.||..|+.. +... ....||.|+..
T Consensus 24 ~C~IC~~~~~~-----p~~~~~CgH~FC~~Ci~~----~~~~-----~~~~CP~Cr~~ 67 (100)
T 3lrq_A 24 RCFICMEKLRD-----ARLCPHCSKLCCFSCIRR----WLTE-----QRAQCPHCRAP 67 (100)
T ss_dssp BCTTTCSBCSS-----EEECTTTCCEEEHHHHHH----HHHH-----TCSBCTTTCCB
T ss_pred CCccCCccccC-----ccccCCCCChhhHHHHHH----HHHH-----CcCCCCCCCCc
Confidence 58899876532 466788999999999752 2111 12789999975
No 244
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=43.45 E-value=21 Score=28.75 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=25.3
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 172 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~l 172 (719)
...||.+|.+..- .-..+-++|..|...+|..|...
T Consensus 22 ~pt~C~~C~~~l~-Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 22 SPTFCEHCGTLLW-GLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp SCCBCSSSCCBCC-CSSSCSEEESSSCCEECTTTTTT
T ss_pred CCcCchhcChhhe-ecCCcccccCCCCCccCHhHHhh
Confidence 3456777766531 11345689999999999999863
No 245
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.32 E-value=22 Score=29.42 Aligned_cols=12 Identities=25% Similarity=0.899 Sum_probs=6.4
Q ss_pred CCCccCCCCCCC
Q 005013 100 KHTKCHSCGSNV 111 (719)
Q Consensus 100 ~C~~C~sCg~r~ 111 (719)
.|.+|..|+...
T Consensus 41 ~CF~C~~C~~~L 52 (82)
T 2co8_A 41 SCFRCHTCEATL 52 (82)
T ss_dssp TTCBCSSSCCBC
T ss_pred CcCEEcCCCCCc
Confidence 444566666543
No 246
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=43.31 E-value=13 Score=28.34 Aligned_cols=32 Identities=25% Similarity=0.550 Sum_probs=23.9
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 172 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~l 172 (719)
+..||.+|.+... +-++|..|...+|..|...
T Consensus 13 ~pt~C~~C~~~l~-----qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 13 KLAFCDICQKFLL-----NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp SCEECTTSSSEEC-----SEEECTTTTCCBCSTTSSS
T ss_pred CCcCCCCcccccc-----cCCEeCCCCCeEChhHHhh
Confidence 3456777766532 4589999999999999873
No 247
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.07 E-value=16 Score=28.13 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=10.5
Q ss_pred cCCCcchhhhcCC
Q 005013 24 SCGKKYHRNCLKN 36 (719)
Q Consensus 24 ~CgksYH~~CL~p 36 (719)
.|++.|+..|+..
T Consensus 23 ~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 23 PCLHTLCSGCLEA 35 (56)
T ss_dssp TTSCCSBTTTCSS
T ss_pred CCCCcccHHHHcc
Confidence 5888888888865
No 248
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=41.01 E-value=3.3 Score=35.23 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=25.7
Q ss_pred cccccccCCCCCceeecCCCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 56 ICEICRRTGDPNKFMFCRRCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 56 ~C~VC~~sgd~~kLL~CdrC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
.|.+|...-.....+..-.|+..||..|+..-+. ..-.||.|..
T Consensus 42 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~----~~~~CP~Cr~ 85 (91)
T 2l0b_A 42 CCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ----KSGTCPVCRC 85 (91)
T ss_dssp EETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT----TTCBCTTTCC
T ss_pred CCcccChhhcCCCcEEecCCCChHHHHHHHHHHH----cCCcCcCcCc
Confidence 4566664433333343345999999999874322 1236777753
No 249
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=40.87 E-value=5.4 Score=35.32 Aligned_cols=26 Identities=23% Similarity=0.744 Sum_probs=19.3
Q ss_pred cCCCcchhhhcCCCcccccccCCCCCCCCCCc
Q 005013 24 SCGKKYHRNCLKNWAQNRDLFHWSSWKCPSCR 55 (719)
Q Consensus 24 ~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~Cr 55 (719)
.|+..|+..|+..|.... ...||.|+
T Consensus 35 ~CgH~fC~~Ci~~~~~~~------~~~CP~Cr 60 (118)
T 3hct_A 35 PCGHRFCKACIIKSIRDA------GHKCPVDN 60 (118)
T ss_dssp TTSCEEEHHHHHHHHHHH------CSBCTTTC
T ss_pred CcCChhhHHHHHHHHhhC------CCCCCCCC
Confidence 799999999998876432 23677774
No 250
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=40.28 E-value=21 Score=35.26 Aligned_cols=44 Identities=16% Similarity=0.397 Sum_probs=33.0
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEe-cCCchhhhh
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITL-DDSRVKTLE 701 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~-ddg~~~~~~ 701 (719)
-.+|.-+-+.++.|+.||-|.|.++.+.. +..|.| |=|..+++.
T Consensus 66 ~~~G~~c~a~~~~d~~WyRa~V~~~~~~~-~~~V~~vDyGn~~~v~ 110 (226)
T 4b9x_A 66 AEIGRPCCAFFSGDGNWYRALVKEILPSG-NVKVHFVDYGNVEEVT 110 (226)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSSS-EEEEECTTTCCEEEEE
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCCC-eEEEEEEecCCEEEEE
Confidence 45788899999999999999999997543 466665 446665543
No 251
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=40.10 E-value=12 Score=32.71 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=8.5
Q ss_pred CCCCcccCCCCc
Q 005013 92 SSGPYLCPKHTK 103 (719)
Q Consensus 92 p~g~W~CP~C~~ 103 (719)
..+.|.|+.|..
T Consensus 62 ~~g~W~C~~C~~ 73 (92)
T 3gj8_B 62 PEGSWDCEVCLV 73 (92)
T ss_dssp --CCEECTTTCC
T ss_pred CCCcccCCcCCc
Confidence 468999999864
No 252
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=39.83 E-value=22 Score=39.81 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=35.4
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecC-Cchhhhhc
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDD-SRVKTLEL 702 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~dd-g~~~~~~l 702 (719)
-.+|.-+-+.|. |+.||-++|.++.. ..+..|.|-| |..+++.+
T Consensus 412 ~~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~ 456 (570)
T 3bdl_A 412 PRRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPS 456 (570)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECG
T ss_pred CCcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEH
Confidence 468999999998 99999999999987 3457788766 77776543
No 253
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=38.11 E-value=10 Score=32.91 Aligned_cols=34 Identities=29% Similarity=0.911 Sum_probs=24.1
Q ss_pred CCCCCCCCccccccccCCCCCceeecCC--CCCcccccccC
Q 005013 47 SSWKCPSCRICEICRRTGDPNKFMFCRR--CDAAYHCYCQH 85 (719)
Q Consensus 47 ~~W~Cp~Cr~C~VC~~sgd~~kLL~Cdr--C~raYH~~CL~ 85 (719)
..|. ..|.+|++.+ ..-.+.|.. |.++||..|..
T Consensus 14 ~R~~----l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 14 ARWK----LTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCC----CCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHH
T ss_pred HHhc----CCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHH
Confidence 5564 3677777542 126899985 99999999965
No 254
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.22 E-value=27 Score=29.75 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=25.4
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 172 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~l 172 (719)
...||.+|.+.. ..-..+-++|..|...+|..|...
T Consensus 27 ~pt~C~~C~~~l-~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 27 SPTFCDHCGSLL-YGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp SCCBCSSSCCBC-CCSSSCEEECSSSCCEEETTTTTT
T ss_pred CCcCCcccCccc-cccccCCCcCCCcCCccCHhHHhh
Confidence 445677776643 111246689999999999999873
No 255
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.11 E-value=8.7 Score=34.28 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=25.8
Q ss_pred CCCCccCCCCCCCCCCCCccccccCccccCCCccc-ccccccccccccccc
Q 005013 99 PKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRL-FVKGNYCPVCLKVYR 148 (719)
Q Consensus 99 P~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~l-fvK~nyC~VC~K~Y~ 148 (719)
+.|.+|..|+......+...-+..+..+|..|... |.....|..|.+...
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 34455677776543211122233466778777642 222236888876543
No 256
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=36.82 E-value=43 Score=30.96 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=31.0
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCch
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 697 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~ 697 (719)
.||-||..-|+ ++-.|+|+|+++..- --..|.||||.-
T Consensus 7 ~vGq~V~akh~-ngryy~~~V~~~~~~-~~y~V~F~DgS~ 44 (118)
T 2qqr_A 7 TAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSF 44 (118)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEEEE-EEEEEEETTSCE
T ss_pred ccCCEEEEECC-CCCEEeEEEEEEeeE-EEEEEEcCCCCc
Confidence 57889988885 788899999998544 458899999964
No 257
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=35.87 E-value=46 Score=29.30 Aligned_cols=38 Identities=5% Similarity=-0.003 Sum_probs=32.2
Q ss_pred cccceEEEEecCCCCeeeeeEEEeec--CceeEEEEecCCch
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVE--GTSTLSITLDDSRV 697 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~--~~~~~~v~~ddg~~ 697 (719)
.||-+|-|++ |+.||+..|.++.. +.-...|-|.+-..
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~Nk 64 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNK 64 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCT
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCc
Confidence 6999999997 99999999999864 55679999987654
No 258
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=35.39 E-value=26 Score=28.54 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=12.1
Q ss_pred cCCCc-chhhhcCCC
Q 005013 24 SCGKK-YHRNCLKNW 37 (719)
Q Consensus 24 ~Cgks-YH~~CL~p~ 37 (719)
.|++. |+..|+..+
T Consensus 41 pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV 55 (74)
T ss_dssp TTCCBCCCHHHHTTC
T ss_pred CCCChhHHHHhhhcC
Confidence 79999 999998764
No 259
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=35.36 E-value=66 Score=28.57 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=36.0
Q ss_pred cceEEEEecCCCCeeeeeEEEeec-----CceeEEEEecCCchhhhhcCcceeEeeeccc
Q 005013 660 GKRVEVHQQSDNSWHKGVVTDTVE-----GTSTLSITLDDSRVKTLELGKQGVRFVPQKQ 714 (719)
Q Consensus 660 ~krv~v~~~~d~~w~~g~v~~~~~-----~~~~~~v~~ddg~~~~~~lgk~~i~~~~~~~ 714 (719)
|.+|-|+|+ |+.||+..|..+.. +.-+..|-|.+-.. .|| |||+.-+
T Consensus 18 ~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~Nk-RlD------EWV~~~R 69 (92)
T 2bud_A 18 DKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNR-RLD------GWVGRHR 69 (92)
T ss_dssp TSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCT-TTC------EEEETTT
T ss_pred CCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCccc-ccc------cccCHHH
Confidence 779999995 99999999999864 34579999986543 333 7887644
No 260
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=34.76 E-value=18 Score=27.35 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=24.7
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 171 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~ 171 (719)
...+|.+|.+.. ..-..+.++|..|...+|..|..
T Consensus 10 ~pt~C~~C~~~l-~g~~~qg~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 10 SPTFCDHCGSLL-WGLVKQGLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp SCCBCTTTCCBC-CSSSSCEEEETTTCCEECHHHHT
T ss_pred CCCCcCCCCcee-eccCCccCEeCCCCCeECHHHhh
Confidence 445677776653 11134668999999999999976
No 261
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=34.37 E-value=19 Score=29.32 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=26.2
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 171 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~ 171 (719)
+..+|.+|++.+. .+...+.|..|....|..|-.
T Consensus 18 ~~~~C~~Cg~~i~--~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 18 KPESCVPCGKRIK--FGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp SCEECTTTCCEEC--TTCEEEEESSSSCEECGGGGG
T ss_pred CCcccccccCEEE--EeeEeeECCCCCCeEchhHhh
Confidence 4457888877652 455778999999999999954
No 262
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=34.07 E-value=25 Score=35.22 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=32.3
Q ss_pred ccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcCcc
Q 005013 659 IGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQ 705 (719)
Q Consensus 659 i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lgk~ 705 (719)
+|++|.|..+- . +.|++..+++ .+.|.|+.+||+.+++--|.=
T Consensus 188 ~g~~V~v~~~~--~-~~G~~~gId~-~G~L~v~~~~G~~~~~~~Gev 230 (235)
T 2dxu_A 188 LGVRVKILGDG--S-FEGIAEDIDD-FGRLIIRLDSGEVKKVIYGDV 230 (235)
T ss_dssp CSSEEEC------C-CEEEEEEECT-TSCEEEECTTSCEEEECCSSC
T ss_pred cCCeEEEEECC--e-EEEEEEEECC-CCEEEEEECCCCEEEEEeeEE
Confidence 89999998753 3 9999999986 345999999998887766643
No 263
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.41 E-value=27 Score=29.49 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=25.5
Q ss_pred ccccccccccccccCCCCCCceeccCCCCeeccCCCC
Q 005013 135 VKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 171 (719)
Q Consensus 135 vK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~ 171 (719)
....||.+|.+..- .-..+.++|..|...+|..|..
T Consensus 26 ~~pt~C~~C~~~lw-Gl~kqg~~C~~C~~~~Hk~C~~ 61 (83)
T 2yuu_A 26 GQPTFCSVCKDFVW-GLNKQGYKCRQCNAAIHKKCID 61 (83)
T ss_dssp SSCCCCSSSCCCCC-SSSCCEEEETTTCCEECTTGGG
T ss_pred CCCcChhhcChhhc-cccccccccCCcCCeeChhhhh
Confidence 34456777876531 1134668999999999999976
No 264
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=33.28 E-value=19 Score=31.18 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=25.9
Q ss_pred cccccccccccCCCCCCceeccCCCCeeccCCCC
Q 005013 138 NYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 171 (719)
Q Consensus 138 nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~ 171 (719)
.+|.||.+.-.......-+.|.-|++.+|..|..
T Consensus 39 s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~ 72 (84)
T 1r79_A 39 AKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE 72 (84)
T ss_dssp CBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred CEeCCCCCEeCCccCCCCCCCcccChhHHHHHHH
Confidence 3688887765444455667899999999999964
No 265
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.22 E-value=7.9 Score=32.86 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=28.8
Q ss_pred CCccCcCCccCCcccCCceEEeCcCCCcchhhhcCCCccccc-ccCCCCCCCCC
Q 005013 1 MCRLCFVGENEGCERARRMLSCKSCGKKYHRNCLKNWAQNRD-LFHWSSWKCPS 53 (719)
Q Consensus 1 ~C~iC~~Ce~~Gse~~eeLL~Cd~CgksYH~~CL~p~~e~~~-~~~~~~W~Cp~ 53 (719)
.|.||+.--. ...++.-..|++.|...|+.......- ........||.
T Consensus 7 ~C~IC~~~~~-----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~ 55 (94)
T 1wim_A 7 GCKLCLGEYP-----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPD 55 (94)
T ss_dssp CCSSSCCCCB-----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSC
T ss_pred CCcccCcccc-----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCcc
Confidence 4788874321 225666678999999999986543210 00012457887
No 266
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=32.22 E-value=12 Score=39.37 Aligned_cols=60 Identities=23% Similarity=0.541 Sum_probs=31.3
Q ss_pred ccccccccccc-----c--C-CCCCCceeccCCCCeec------cCCCCCChHHHhhhcc-------CCCCceeCCCCCC
Q 005013 137 GNYCPVCLKVY-----R--D-SESTPMVCCDVCQRWVH------CQCDGISDEKYLQFQV-------DGNLQYRCPTCRG 195 (719)
Q Consensus 137 ~nyC~VC~K~Y-----~--d-sdgg~MIqCD~C~~wFH------~eCL~lsdEkye~~~i-------d~d~~Y~CptCr~ 195 (719)
..+||||+... . . .++...+.|..|...+| +.|.+.....|..+.. +.-..+.|..|..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~ 261 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQG 261 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccc
Confidence 35677776543 1 1 23445667777777776 2344322223333322 1123789999975
Q ss_pred C
Q 005013 196 E 196 (719)
Q Consensus 196 ~ 196 (719)
-
T Consensus 262 Y 262 (309)
T 2fiy_A 262 Y 262 (309)
T ss_dssp E
T ss_pred h
Confidence 4
No 267
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=31.81 E-value=22 Score=28.48 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=19.7
Q ss_pred CCCCcccccccCCCCcCC---CCCCcccCCCCc
Q 005013 74 RCDAAYHCYCQHPPHKNV---SSGPYLCPKHTK 103 (719)
Q Consensus 74 rC~raYH~~CL~PpL~~I---p~g~W~CP~C~~ 103 (719)
.|+..||..|+..-+... ......||.|..
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~ 61 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGI 61 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCC
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCC
Confidence 688889999988544321 123567887754
No 268
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=30.42 E-value=23 Score=30.85 Aligned_cols=27 Identities=15% Similarity=0.392 Sum_probs=19.0
Q ss_pred CCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 74 RCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 74 rC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
.|+..|+..|+..-+. .+...||.|..
T Consensus 32 ~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 58 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVE---KASLCCPFCRR 58 (115)
T ss_dssp TTSCEECHHHHCCCCC---TTTSBCTTTCC
T ss_pred CCCCHHhHHHHHHHHh---HCcCCCCCCCc
Confidence 6899999999985442 23467887754
No 269
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=29.25 E-value=34 Score=28.49 Aligned_cols=32 Identities=19% Similarity=0.545 Sum_probs=23.5
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 171 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~ 171 (719)
...||..|+... ..+-++|..|...+|..|..
T Consensus 34 ~pt~C~~C~~~l----~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 34 GPGWCDLCGREV----LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp SCCBCTTTSSBC----SSCCEECTTSSCEECTGGGG
T ss_pred CCcchhhhhHHH----HhCcCccCCCCCeechhhhc
Confidence 344666676554 34558999999999999975
No 270
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=28.82 E-value=41 Score=35.24 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=34.1
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcC
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELG 703 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lg 703 (719)
.+|++|+|..+ +..+.|++..++.. +.|.|+.+||+.+++--|
T Consensus 277 ~~g~~V~v~~~--~~~~~G~~~gId~~-G~Llv~~~~G~~~~~~sG 319 (323)
T 3rkx_A 277 IWNRTLLFTEN--DKQFKGQAIDLDYD-GYLIVRDEAGESHRLISA 319 (323)
T ss_dssp CSSSCEEEECC---CEEEEEEEEECTT-SCEEEEETTSCEEEESSC
T ss_pred hcCCEEEEEEC--CeEEEEEEEEECCC-CEEEEEECCCCEEEEEEe
Confidence 57999999864 45789999999873 459999999988776554
No 271
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=28.58 E-value=27 Score=28.15 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=14.0
Q ss_pred CCCccCCCCCCCCCCCCccccccCccccC-CCc
Q 005013 100 KHTKCHSCGSNVPGNGLSVRWFLGYTCCD-ACG 131 (719)
Q Consensus 100 ~C~~C~sCg~r~pgki~s~RW~~~~slC~-aC~ 131 (719)
.|..|..|+...... ..-...+..+|. .|.
T Consensus 26 ~CF~C~~C~~~L~~~--~~~~~~g~~yC~~~cy 56 (76)
T 1iml_A 26 PCLKCEKCGKTLTSG--GHAEHEGKPYCNHPCY 56 (76)
T ss_dssp TTCBCTTTCCBCCTT--TEEEETTEEEETTTHH
T ss_pred CCCCccccCccCCCC--ceECcCCeEeeCHHHH
Confidence 455566676554332 111223455665 354
No 272
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=28.47 E-value=33 Score=28.71 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=26.6
Q ss_pred cccccccccccccccCCCCCCceeccCCCCeeccCCCCC
Q 005013 134 FVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGI 172 (719)
Q Consensus 134 fvK~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~l 172 (719)
|....||.+|.+..-. -..+-++|..|...+|..|...
T Consensus 31 f~~pt~C~~C~~~lwG-l~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 31 FPQPTFCSVCHEFVWG-LNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp CSSCEECSSSCCEECC-TTCCEEECSSSCCEEESGGGSS
T ss_pred CCCCcCccccChhhcc-ccccccCcCCCCCcCCHhHHhh
Confidence 3445678888765321 1345689999999999999763
No 273
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=28.14 E-value=28 Score=28.14 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=24.0
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 171 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~ 171 (719)
...||.+|.+.. ..-..+-++|..|...+|..|..
T Consensus 23 ~pt~C~~C~~~l-~Gl~~qg~~C~~C~~~~Hk~C~~ 57 (66)
T 1y8f_A 23 TPTYCYECEGLL-WGIARQGMRCTECGVKCHEKCQD 57 (66)
T ss_dssp SCCCCTTTCCCC-CSSCCEEEEETTTCCEECTTHHH
T ss_pred CCcChhhcChhh-cccCcceeEcCCCCCeeCHHHHh
Confidence 445677776643 11123568899999999999964
No 274
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=27.94 E-value=26 Score=28.17 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=24.6
Q ss_pred cccccccccccccCCCCCCceeccCCCCeeccCCCC
Q 005013 136 KGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 171 (719)
Q Consensus 136 K~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~ 171 (719)
...||.+|..... .-..+-++|..|...+|..|..
T Consensus 19 ~pt~C~~C~~~l~-Gl~~qg~~C~~C~~~~Hk~C~~ 53 (65)
T 3uej_A 19 SPTFCDHCGSLLW-GLVKQGLKCEDCGMNVHHKCRE 53 (65)
T ss_dssp SCCBCTTTCCBCC-SSSSCEEEETTTCCEECHHHHT
T ss_pred CCCcccccChhhh-ccCceeeECCCCCCeEchhHhh
Confidence 4456777766431 1134568999999999999976
No 275
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=27.92 E-value=1.1e+02 Score=27.91 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=34.6
Q ss_pred cccceEEEEecCC----CCeeeeeEEEeecCc-------eeEEEEecCCchhhhhcCcceeEeeec
Q 005013 658 AIGKRVEVHQQSD----NSWHKGVVTDTVEGT-------STLSITLDDSRVKTLELGKQGVRFVPQ 712 (719)
Q Consensus 658 ~i~krv~v~~~~d----~~w~~g~v~~~~~~~-------~~~~v~~ddg~~~~~~lgk~~i~~~~~ 712 (719)
.+|-||-+|.+ | +.||+..|.+|.... -...|-|. |=-.+.| ||||.
T Consensus 21 ~~GEkVLc~hg-d~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~-GWn~~wD------EWV~e 78 (110)
T 3m9p_A 21 HSGEKVLCFEP-DPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFN-GWNRSWD------RWAAE 78 (110)
T ss_dssp CTTCEEEEECS-CTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEET-TSCGGGC------EEEEG
T ss_pred cCCCEEEEEcC-CCCCCCCceeeEEEEEEeccCcccccceEEEEEEC-CCCcchh------hccCH
Confidence 58999999974 5 789999999996532 46888885 3334444 77765
No 276
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.08 E-value=63 Score=26.94 Aligned_cols=43 Identities=21% Similarity=0.557 Sum_probs=23.9
Q ss_pred CCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCCC
Q 005013 152 STPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGECY 198 (719)
Q Consensus 152 gg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~~ 198 (719)
+...+.|..|.+.|-..-. + ..-.+. -.++..|.|+.|...-.
T Consensus 63 ~~~~~~C~~C~~~f~~~~~-l--~~H~~~-h~~~~~~~C~~C~~~f~ 105 (124)
T 2dlq_A 63 SEQVFTCSVCQETFRRRME-L--RLHMVS-HTGEMPYKCSSCSQQFM 105 (124)
T ss_dssp CCCCEECSSSCCEESSHHH-H--HHHHHH-HSSSCSEECSSSCCEES
T ss_pred CCCCeECCCCCCccCCHHH-H--HHHHHH-cCCCCCccCCCccchhC
Confidence 4456789999987754210 0 000111 12345799999976433
No 277
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.87 E-value=57 Score=26.31 Aligned_cols=14 Identities=14% Similarity=0.496 Sum_probs=9.1
Q ss_pred CCCCccCCCCCCCC
Q 005013 99 PKHTKCHSCGSNVP 112 (719)
Q Consensus 99 P~C~~C~sCg~r~p 112 (719)
+.|..|..|+....
T Consensus 39 ~~CF~C~~C~~~L~ 52 (80)
T 2cuq_A 39 RECLVCTGCQTPLA 52 (80)
T ss_dssp TTTCBCSSSCCBCT
T ss_pred hhhCCcccCCCcCC
Confidence 56666777876543
No 278
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=26.84 E-value=34 Score=31.83 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=30.9
Q ss_pred cccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCch
Q 005013 656 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 697 (719)
Q Consensus 656 ~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~ 697 (719)
.=.||-||-.-|. ++-.|+|.|+.+.. .--..|+||||.-
T Consensus 6 ~v~vGq~V~ak~~-ngryy~~~V~~~~~-~~~y~V~F~DgS~ 45 (123)
T 2xdp_A 6 VISVGQTVITKHR-NTRYYSCRVMAVTS-QTFYEVMFDDGSF 45 (123)
T ss_dssp CCCTTCCCCCCCC-CCCCCCCEEEEEEE-EEEEEEEETTSCE
T ss_pred ccccCCEEEEECC-CCcEEeEEEEEEee-EEEEEEEcCCCCc
Confidence 3346666666675 58899999999986 4468999999974
No 279
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=26.75 E-value=74 Score=28.24 Aligned_cols=38 Identities=5% Similarity=-0.003 Sum_probs=31.9
Q ss_pred cccceEEEEecCCCCeeeeeEEEeec--CceeEEEEecCCch
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVE--GTSTLSITLDDSRV 697 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~--~~~~~~v~~ddg~~ 697 (719)
.||-+|-|+. |+.||+..|.++.. +.-...|-|.+-..
T Consensus 27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~Nk 66 (94)
T 2rnz_A 27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNK 66 (94)
T ss_dssp CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCS
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCc
Confidence 6999999997 99999999999864 55678999987643
No 280
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.43 E-value=12 Score=29.78 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=19.4
Q ss_pred CCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 74 RCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 74 rC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
.|+..||..|+..-+. .......||.|..
T Consensus 37 ~CgH~fC~~Ci~~~~~-~~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGE-TSCGFFKCPLCKT 65 (73)
T ss_dssp TTCCEEEHHHHHHHCS-SSCSCCCCSSSCC
T ss_pred CCCChhhHHHHHHHHH-cCCCCCCCCCCCC
Confidence 7999999999874332 1134567887754
No 281
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=26.18 E-value=9.8 Score=35.24 Aligned_cols=26 Identities=27% Similarity=0.792 Sum_probs=18.8
Q ss_pred CcCCCcchhhhcCCCcccccccCCCCCCCCCC
Q 005013 23 KSCGKKYHRNCLKNWAQNRDLFHWSSWKCPSC 54 (719)
Q Consensus 23 d~CgksYH~~CL~p~~e~~~~~~~~~W~Cp~C 54 (719)
..|+..|+..|+..+... ....||.|
T Consensus 47 ~~CgH~FC~~Ci~~~~~~------~~~~CP~C 72 (141)
T 3knv_A 47 AQCGHRYCSFCLASILSS------GPQNCAAC 72 (141)
T ss_dssp CTTSCEEEHHHHHHHGGG------SCEECHHH
T ss_pred CCCCCccCHHHHHHHHhc------CCCCCCCC
Confidence 389999999999887542 23456665
No 282
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=25.88 E-value=39 Score=29.51 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=31.9
Q ss_pred cCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcCcceeEeee
Q 005013 668 QSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRFVP 711 (719)
Q Consensus 668 ~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lgk~~i~~~~ 711 (719)
|..+.|+.++|+++...+ ..|.+.+|+.-+ |..+.++|..
T Consensus 31 ~~~~~~~~AvV~~v~~~~--~~v~~~~g~~~~--l~~~~~~WA~ 70 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGA--VEAFRKNGETIR--ITGDGLKAAH 70 (106)
T ss_dssp CTTTTCEEEEEEEEETTE--EEEEETTSCEEE--ECGGGGSTTG
T ss_pred CccCCeEEEEEEEeCCCe--EEEEEcCCCeEE--EcHHHChhhh
Confidence 444789999999999876 889998885555 6778899974
No 283
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=25.57 E-value=58 Score=26.83 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=25.1
Q ss_pred cccccceEEEEecCCCCeeeeeEEEeecCc
Q 005013 656 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGT 685 (719)
Q Consensus 656 ~~~i~krv~v~~~~d~~w~~g~v~~~~~~~ 685 (719)
..++|++|.|.. -|+.-|.|++.+||.-.
T Consensus 10 ~~~~~~~V~V~L-~~g~~~~G~L~~~D~~m 38 (77)
T 1i4k_A 10 NRSLKSPVIVRL-KGGREFRGTLDGYDIHM 38 (77)
T ss_dssp HTTTTSEEEEEE-TTSCEEEEEEEEECTTC
T ss_pred HHhCCCEEEEEE-cCCCEEEEEEEEEcCCC
Confidence 357899999988 67899999999999765
No 284
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.35 E-value=59 Score=26.37 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=10.7
Q ss_pred CcccCCCCccCCCCCCCC
Q 005013 95 PYLCPKHTKCHSCGSNVP 112 (719)
Q Consensus 95 ~W~CP~C~~C~sCg~r~p 112 (719)
.|. +.|..|..|+....
T Consensus 38 ~~H-~~CF~C~~C~~~L~ 54 (82)
T 1x63_A 38 VWH-KDCFTCSNCKQVIG 54 (82)
T ss_dssp EEE-TTTCCCSSSCCCCT
T ss_pred ccc-cccCchhhCCCccC
Confidence 344 56777788876543
No 285
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=25.26 E-value=45 Score=23.98 Aligned_cols=10 Identities=30% Similarity=1.238 Sum_probs=8.1
Q ss_pred CCCCCCCCCc
Q 005013 46 WSSWKCPSCR 55 (719)
Q Consensus 46 ~~~W~Cp~Cr 55 (719)
.+.|.|+.|.
T Consensus 4 ~gDW~C~~C~ 13 (33)
T 2k1p_A 4 ANDWQCKTCS 13 (33)
T ss_dssp SSSCBCSSSC
T ss_pred CCCcccCCCC
Confidence 4789999885
No 286
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=24.92 E-value=49 Score=32.78 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=30.3
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcC
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELG 703 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lg 703 (719)
-.+|++|+| ++ +.|++..++.. +.|.|+.+||. +++-.|
T Consensus 191 ~~~g~~V~v----~~--~~G~~~gId~~-G~L~v~~~~G~-~~i~~G 229 (235)
T 3bfm_A 191 HGMGEARTE----AG--RSGTFLGVDED-FGMLLRDETTT-HLIPLT 229 (235)
T ss_dssp TTTTSEEEE----TT--EEEEEEEECTT-CCEEEECSSCE-EEECGG
T ss_pred hhcCCEEEE----Ee--EEEEEEEECCC-CeEEEEeCCCe-EEEEee
Confidence 357999999 34 99999999754 35999999997 665544
No 287
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=24.24 E-value=52 Score=28.62 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=30.4
Q ss_pred hCcccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCch
Q 005013 654 LGKDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 697 (719)
Q Consensus 654 lg~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~ 697 (719)
|=++++|++|.|.. -|+..|.|++.+||.-. -+.|+|-.+
T Consensus 13 lL~~~~~~~V~V~l-~~gr~~~G~L~~~D~~m---NlvL~d~~E 52 (93)
T 4emg_A 13 LVRLSLDEIVYVKL-RGDRELNGRLHAYDEHL---NMVLGDAEE 52 (93)
T ss_dssp HHHTTTTSEEEEEE-TTTEEEEEEEEEECTTC---CEEEEEEEE
T ss_pred HHHHhCCCEEEEEE-CCCcEEEEEEEEECCcc---cEEeecEEE
Confidence 33567999999998 68999999999998765 344444443
No 288
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=24.18 E-value=18 Score=33.78 Aligned_cols=44 Identities=23% Similarity=0.582 Sum_probs=29.7
Q ss_pred ccccccccccCCCCCCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 005013 139 YCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 197 (719)
Q Consensus 139 yC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~ 197 (719)
.|+||...+.+ +.+ -.|.+.|+..|+.. +.. ...+.||.|+...
T Consensus 80 ~C~IC~~~~~~----pv~--~~CgH~fC~~Ci~~----~~~-----~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 80 MCVCCQELVYQ----PVT--TECFHNVCKDCLQR----SFK-----AQVFSCPACRHDL 123 (150)
T ss_dssp BCTTTSSBCSS----EEE--CTTSCEEEHHHHHH----HHH-----TTCCBCTTTCCBC
T ss_pred EeecCChhhcC----CEE--cCCCCchhHHHHHH----HHH-----hCCCcCCCCCccC
Confidence 59999876643 222 37999999999742 111 1357899999753
No 289
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=23.89 E-value=56 Score=27.04 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.3
Q ss_pred cccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCC
Q 005013 656 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDS 695 (719)
Q Consensus 656 ~~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg 695 (719)
++++||+|.|-. -|+.-|.|++.+||.-. -+.++|-
T Consensus 10 ~~~~~k~V~V~L-k~g~~~~G~L~~~D~~m---NlvL~d~ 45 (75)
T 4emk_B 10 NKVIGKKVLIRL-SSGVDYKGILSCLDGYM---NLALERT 45 (75)
T ss_dssp HHTTTSEEEEEC-TTSCEEEEEEEEECTTC---EEEEEEE
T ss_pred HHhCCCeEEEEE-cCCcEEEEEEEEEcCcc---eEEEccE
Confidence 456999999987 68899999999999755 4444443
No 290
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.71 E-value=46 Score=27.87 Aligned_cols=12 Identities=17% Similarity=0.670 Sum_probs=6.9
Q ss_pred CCCccCCCCCCC
Q 005013 100 KHTKCHSCGSNV 111 (719)
Q Consensus 100 ~C~~C~sCg~r~ 111 (719)
.|..|..|+...
T Consensus 41 ~CF~C~~C~~~L 52 (91)
T 2d8y_A 41 SCFRCSYCNNKL 52 (91)
T ss_dssp TTCBCTTTCCBC
T ss_pred CCCeeCCCCCCC
Confidence 455566676544
No 291
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=23.68 E-value=79 Score=30.07 Aligned_cols=73 Identities=21% Similarity=0.507 Sum_probs=0.0
Q ss_pred eecCCCCCcc-----cccccCCCCcCCCCCCcccCCCCccCCCCCCCCCCCCccccccCccccCCCcccccccccccccc
Q 005013 70 MFCRRCDAAY-----HCYCQHPPHKNVSSGPYLCPKHTKCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCL 144 (719)
Q Consensus 70 L~CdrC~raY-----H~~CL~PpL~~Ip~g~W~CP~C~~C~sCg~r~pgki~s~RW~~~~slC~aC~~lfvK~nyC~VC~ 144 (719)
|.|.-|+++| |..-.+-++........+|..|.. -......|..|...|.+. ||.+|
T Consensus 28 lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~----------------~q~~~~~C~~Cg~~f~~Y-~C~~C- 89 (143)
T 2dkt_A 28 LKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEK----------------LQHAQQTCEDCSTLFGEY-YCSIC- 89 (143)
T ss_dssp EEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCC----------------EECSCSBCSSSCCBSCSE-ECSSS-
T ss_pred EECCCCCCccchhhhhccccccccchhccceeeecccCc----------------cccccCcCCCCCccceee-Eecee-
Q ss_pred ccccCCCCCCceeccCCC
Q 005013 145 KVYRDSESTPMVCCDVCQ 162 (719)
Q Consensus 145 K~Y~dsdgg~MIqCD~C~ 162 (719)
+.|. +..+...|+.|.
T Consensus 90 ~l~d--~~k~~yHC~~Cg 105 (143)
T 2dkt_A 90 HLFD--KDKRQYHCESCG 105 (143)
T ss_dssp CCEE--CSSSEEEETTTT
T ss_pred eccc--CCCceecCCCCC
No 292
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=23.65 E-value=54 Score=28.80 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=28.6
Q ss_pred ccccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCch
Q 005013 657 DAIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRV 697 (719)
Q Consensus 657 ~~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~ 697 (719)
.++|++|.|.. -++.-|.|++.+||.-. -+.|+|-++
T Consensus 27 ~~l~k~V~V~L-k~gr~~~G~L~gfD~~m---NlvL~d~~E 63 (94)
T 4emk_A 27 KCIGSNLWVIM-KSEREFAGTLVGFDDYV---NIVLKDVTE 63 (94)
T ss_dssp HTTTSEEEEEE-SSSEEEEEEEEEECTTC---CEEEEEEEE
T ss_pred HHcCCeEEEEE-CCCcEEEEEEEEEcccC---CeEeeeEEE
Confidence 46889999999 67899999999999765 344555443
No 293
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.53 E-value=30 Score=31.24 Aligned_cols=13 Identities=31% Similarity=0.802 Sum_probs=7.8
Q ss_pred CCCCccCCCCCCC
Q 005013 99 PKHTKCHSCGSNV 111 (719)
Q Consensus 99 P~C~~C~sCg~r~ 111 (719)
+.|.+|..|+...
T Consensus 86 ~~CF~C~~C~~~L 98 (123)
T 2l4z_A 86 SRCLKCSSCQAQL 98 (123)
T ss_dssp TTTSBCTTTCCBG
T ss_pred ccccCcCcCCCcc
Confidence 4556677776543
No 294
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.87 E-value=91 Score=24.91 Aligned_cols=41 Identities=15% Similarity=0.347 Sum_probs=22.3
Q ss_pred CCceeccCCCCeeccCCCCCChHHHhhhccCCCCceeCCCCCCCC
Q 005013 153 TPMVCCDVCQRWVHCQCDGISDEKYLQFQVDGNLQYRCPTCRGEC 197 (719)
Q Consensus 153 g~MIqCD~C~~wFH~eCL~lsdEkye~~~id~d~~Y~CptCr~~~ 197 (719)
...+.|..|...|-..-. + ..-... -.....|.|+.|....
T Consensus 34 ~~~~~C~~C~~~f~~~~~-l--~~H~~~-h~~~~~~~C~~C~~~f 74 (96)
T 2dmd_A 34 VKPYKCKTCDYAAADSSS-L--NKHLRI-HSDERPFKCQICPYAS 74 (96)
T ss_dssp CCSEECSSSCCEESSHHH-H--HHHHHH-SCCCCCEECSSSSCEE
T ss_pred CCCEeCCCCCCccCCHHH-H--HHHHHH-hCCCCCccCCCCCCcc
Confidence 345778888887743210 0 001111 1234579999997543
No 295
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=22.51 E-value=29 Score=24.81 Aligned_cols=17 Identities=29% Similarity=0.897 Sum_probs=11.9
Q ss_pred CCCCCCCCc--------cccccccC
Q 005013 47 SSWKCPSCR--------ICEICRRT 63 (719)
Q Consensus 47 ~~W~Cp~Cr--------~C~VC~~s 63 (719)
+.|.|+.|. .|..|+.+
T Consensus 4 gDW~C~~C~~~Nfa~r~~C~~C~~p 28 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRLKCFRCGAD 28 (32)
T ss_dssp SEEECTTTCCEEETTCCBCTTTCCB
T ss_pred CCCCcCcCcCCcChhcceecCCCCc
Confidence 789999886 55555544
No 296
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=22.41 E-value=66 Score=26.42 Aligned_cols=29 Identities=14% Similarity=-0.002 Sum_probs=25.3
Q ss_pred cccccceEEEEecCCCCeeeeeEEEeecCc
Q 005013 656 KDAIGKRVEVHQQSDNSWHKGVVTDTVEGT 685 (719)
Q Consensus 656 ~~~i~krv~v~~~~d~~w~~g~v~~~~~~~ 685 (719)
..++||+|.|.. -|+.-|.|++.+||.-.
T Consensus 10 ~~~~~~~V~V~l-~~g~~~~G~L~~~D~~m 38 (75)
T 1h64_1 10 HRSLDKDVLVIL-KKGFEFRGRLIGYDIHL 38 (75)
T ss_dssp HTTTTSEEEEEE-TTSEEEEEEEEEECTTC
T ss_pred HHHCCCEEEEEE-CCCCEEEEEEEEEeCCC
Confidence 357999999998 68899999999999765
No 297
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.51 E-value=21 Score=30.62 Aligned_cols=29 Identities=24% Similarity=0.646 Sum_probs=18.7
Q ss_pred CCCCcccccccCCCCcCCCCCCcccCCCCc
Q 005013 74 RCDAAYHCYCQHPPHKNVSSGPYLCPKHTK 103 (719)
Q Consensus 74 rC~raYH~~CL~PpL~~Ip~g~W~CP~C~~ 103 (719)
.|+..||..|+..-+.. ..+...||.|..
T Consensus 38 ~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~ 66 (112)
T 1jm7_A 38 KCDHIFCKFCMLKLLNQ-KKGPSQCPLCKN 66 (112)
T ss_dssp TTSCCCCSHHHHHHHHS-SSSSCCCTTTSC
T ss_pred CCCCHHHHHHHHHHHHh-CCCCCCCcCCCC
Confidence 68999999998743221 123467887754
No 298
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=21.46 E-value=34 Score=27.27 Aligned_cols=31 Identities=19% Similarity=0.575 Sum_probs=22.6
Q ss_pred ccccccccccccCCCCCCceeccCCCCeeccCCCC
Q 005013 137 GNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDG 171 (719)
Q Consensus 137 ~nyC~VC~K~Y~dsdgg~MIqCD~C~~wFH~eCL~ 171 (719)
..||..|+... ..+.++|..|...+|..|..
T Consensus 22 pt~C~~C~~~i----~kqg~kC~~C~~~cH~kC~~ 52 (59)
T 1rfh_A 22 PGWCDLCGREV----LRQALRCANCKFTCHSECRS 52 (59)
T ss_dssp CEECTTTCSEE----CSCCEECTTTSCEECHHHHT
T ss_pred CeEchhcchhh----hhCccEeCCCCCeEehhhhh
Confidence 34566665544 24568999999999999965
No 299
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.32 E-value=56 Score=26.23 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=7.2
Q ss_pred CCCccCCCCCCCC
Q 005013 100 KHTKCHSCGSNVP 112 (719)
Q Consensus 100 ~C~~C~sCg~r~p 112 (719)
.|..|..|+....
T Consensus 35 ~CF~C~~C~~~L~ 47 (76)
T 2cu8_A 35 FCLKCERCSKTLT 47 (76)
T ss_dssp TTCBCSSSCCBCC
T ss_pred CCCCCCCCCCccC
Confidence 4555666765543
No 300
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=21.28 E-value=43 Score=33.35 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=32.8
Q ss_pred cccceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcCc
Q 005013 658 AIGKRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGK 704 (719)
Q Consensus 658 ~i~krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lgk 704 (719)
.+|++|+|..+ +. +.|++..+++. +.|.|+.+||. +++--|.
T Consensus 186 ~~g~~V~v~~~--~~-~~G~~~gId~~-G~L~v~~~~G~-~~~~~Ge 227 (233)
T 2eay_A 186 YLGEEVKLLGE--GK-ITGKLVGLSEK-GGALILTEEGI-KEILSGE 227 (233)
T ss_dssp TTTSEEEETTE--EE-EEEEEEEECTT-SCEEEEETTEE-EEECSCC
T ss_pred ccCCEEEEEEC--Ce-EEEEEEEECCC-CeEEEEECCCe-EEEEEeE
Confidence 37999999865 33 99999999863 35999999998 7666554
No 301
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=21.05 E-value=39 Score=28.31 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=12.5
Q ss_pred cccccccccCCCCCCceeccCCCCeecc
Q 005013 140 CPVCLKVYRDSESTPMVCCDVCQRWVHC 167 (719)
Q Consensus 140 C~VC~K~Y~dsdgg~MIqCD~C~~wFH~ 167 (719)
||+|.....-......+.|..|..+|=.
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 11 CPICKGPLKLSADKTELISKGAGLAYPI 38 (69)
T ss_dssp CTTTCCCCEECTTSSEEEETTTTEEEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 5566543221122234455556555543
No 302
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=20.98 E-value=1.9e+02 Score=25.98 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=35.6
Q ss_pred cccceEEEEecC---CCCeeeeeEEEeecC-------ceeEEEEecCCchhhhhcCcceeEeeecc
Q 005013 658 AIGKRVEVHQQS---DNSWHKGVVTDTVEG-------TSTLSITLDDSRVKTLELGKQGVRFVPQK 713 (719)
Q Consensus 658 ~i~krv~v~~~~---d~~w~~g~v~~~~~~-------~~~~~v~~ddg~~~~~~lgk~~i~~~~~~ 713 (719)
++|.+|-+|.+- ...||+..|..|... .-...|-|. |=-.+.| ||||.-
T Consensus 21 ~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~-GWn~rwD------EWV~ed 79 (101)
T 3m9q_A 21 HKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQ-GWRPSYD------RAVRAT 79 (101)
T ss_dssp CTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEET-TSCGGGC------EEECGG
T ss_pred cCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeC-CCCcCce------eecCHH
Confidence 689999999953 578999999999763 346788885 3334444 777753
No 303
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.98 E-value=1.2e+02 Score=24.16 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCCCCcccCCCCc--------cCCCCCCCC
Q 005013 91 VSSGPYLCPKHTK--------CHSCGSNVP 112 (719)
Q Consensus 91 Ip~g~W~CP~C~~--------C~sCg~r~p 112 (719)
.+.+.|.|+.|.. |..|+...+
T Consensus 7 ~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~ 36 (53)
T 2d9g_A 7 GDEGYWDCSVCTFRNSAEAFKCMMCDVRKG 36 (53)
T ss_dssp SCCCCEECSSSCCEECSSCSSCSSSCCCCC
T ss_pred CCCCCcCCCCCccCCCCCCCccCCCCCcCC
Confidence 3456899999975 666665443
No 304
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.91 E-value=55 Score=25.51 Aligned_cols=31 Identities=19% Similarity=0.515 Sum_probs=16.0
Q ss_pred ecCCCCCcccccccCC-CCcCCCCCCcccCCCC
Q 005013 71 FCRRCDAAYHCYCQHP-PHKNVSSGPYLCPKHT 102 (719)
Q Consensus 71 ~CdrC~raYH~~CL~P-pL~~Ip~g~W~CP~C~ 102 (719)
.|..|+-.|...=-+| +...+ ...|.||.|.
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~l-P~dw~CP~Cg 37 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQL-PDDWCCPVCG 37 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGS-CTTCBCTTTC
T ss_pred ECCCCCeEEeCCcCCCcchhhC-CCCCcCcCCC
Confidence 5666665554322221 12223 3469999974
No 305
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=20.80 E-value=40 Score=29.94 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=8.3
Q ss_pred CCCCcccCCCCc
Q 005013 92 SSGPYLCPKHTK 103 (719)
Q Consensus 92 p~g~W~CP~C~~ 103 (719)
..+.|-|+.|.+
T Consensus 69 ~~g~W~C~~C~~ 80 (98)
T 3gj7_B 69 AIGTWDCDTCLV 80 (98)
T ss_dssp --CCEECTTTCC
T ss_pred CCCcccCCcCcC
Confidence 457899999865
No 306
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.79 E-value=34 Score=28.60 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=12.6
Q ss_pred cccccccccCCCCCCceeccCCCCeecc
Q 005013 140 CPVCLKVYRDSESTPMVCCDVCQRWVHC 167 (719)
Q Consensus 140 C~VC~K~Y~dsdgg~MIqCD~C~~wFH~ 167 (719)
||+|.....-......+.|..|..+|=.
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 11 CPLCKGPLVFDKSKDELICKGDRLAFPI 38 (68)
T ss_dssp CTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 5566543221112234456666555543
No 307
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=20.51 E-value=33 Score=30.78 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=31.4
Q ss_pred ceEEEEecCCCCeeeeeEEEeecCceeEEEEecCCchhhhhcCcceeEe
Q 005013 661 KRVEVHQQSDNSWHKGVVTDTVEGTSTLSITLDDSRVKTLELGKQGVRF 709 (719)
Q Consensus 661 krv~v~~~~d~~w~~g~v~~~~~~~~~~~v~~ddg~~~~~~lgk~~i~~ 709 (719)
+.|+|..+..+....|-=-+..++. +.|.|+||..+.|-|...+|.+
T Consensus 7 ~~iei~~~P~k~Y~vGE~LDltGl~--v~~~YsDgt~~~~~lt~~~v~V 53 (98)
T 2l7y_A 7 LGIEVSQEPKKDYLVGDSLDLSEGR--FAVAYSNDTMEEHSFTDEGVEI 53 (98)
T ss_dssp EEEEECCCSCCEEETTTCCCCCSCE--EEEEETTSCEEEEESCCTTSEE
T ss_pred EEEEEEcCCCcEEecCCccccCCCE--EEEEEcCCCEEEEecccCCcEE
Confidence 3567777777776666544444444 8888888888877666665444
No 308
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.30 E-value=35 Score=28.47 Aligned_cols=12 Identities=0% Similarity=-0.244 Sum_probs=6.3
Q ss_pred ceeccCCCCeec
Q 005013 155 MVCCDVCQRWVH 166 (719)
Q Consensus 155 MIqCD~C~~wFH 166 (719)
.+.|..|..+|=
T Consensus 26 ~LiC~~cg~~YP 37 (68)
T 2jr6_A 26 ELWSRQAKLAYP 37 (68)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEcCCCCcEec
Confidence 344555555554
No 309
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=20.03 E-value=41 Score=23.51 Aligned_cols=9 Identities=33% Similarity=1.328 Sum_probs=7.4
Q ss_pred CCCCCCCCc
Q 005013 47 SSWKCPSCR 55 (719)
Q Consensus 47 ~~W~Cp~Cr 55 (719)
..|.|+.|.
T Consensus 5 ~~W~C~~CT 13 (31)
T 1nj3_A 5 AMWACQHCT 13 (31)
T ss_dssp CCEECSSSC
T ss_pred ccccCCccc
Confidence 579999986
Done!