Query 005014
Match_columns 719
No_of_seqs 693 out of 5073
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 16:39:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-114 2E-119 912.2 51.6 555 115-682 185-792 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 3E-114 6E-119 924.9 47.2 619 2-677 73-692 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 7E-94 1.5E-98 838.8 67.5 665 1-680 65-731 (733)
4 KOG0736 Peroxisome assembly fa 100.0 4.1E-89 8.8E-94 735.9 51.8 615 45-679 303-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 4E-74 8.7E-79 613.8 41.9 499 152-682 429-939 (952)
6 COG0464 SpoVK ATPases of the A 100.0 4.4E-67 9.6E-72 589.7 44.7 489 138-674 2-492 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 7.2E-61 1.6E-65 480.5 24.9 253 384-661 142-394 (406)
8 KOG0738 AAA+-type ATPase [Post 100.0 1.5E-56 3.2E-61 451.1 21.3 285 383-680 202-490 (491)
9 KOG0741 AAA+-type ATPase [Post 100.0 2.7E-53 6E-58 440.8 33.4 552 2-575 65-684 (744)
10 COG1222 RPT1 ATP-dependent 26S 100.0 1.7E-50 3.7E-55 405.8 27.6 246 113-375 144-392 (406)
11 KOG0739 AAA+-type ATPase [Post 100.0 1.4E-51 3E-56 401.2 17.3 293 383-681 123-438 (439)
12 KOG0727 26S proteasome regulat 100.0 4.1E-50 8.9E-55 382.4 19.2 249 386-659 148-396 (408)
13 KOG0728 26S proteasome regulat 100.0 4.8E-49 1E-53 374.7 19.8 257 385-666 139-395 (404)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 2.9E-46 6.3E-51 409.8 40.2 398 213-677 81-483 (489)
15 KOG0734 AAA+-type ATPase conta 100.0 7.1E-49 1.5E-53 408.3 18.5 242 388-658 299-540 (752)
16 KOG0729 26S proteasome regulat 100.0 1.5E-47 3.3E-52 367.5 17.2 268 376-676 160-427 (435)
17 KOG0726 26S proteasome regulat 100.0 8.6E-48 1.9E-52 373.5 15.4 249 386-659 178-426 (440)
18 KOG0652 26S proteasome regulat 100.0 2.6E-47 5.7E-52 364.8 16.8 251 385-660 163-413 (424)
19 KOG0730 AAA+-type ATPase [Post 100.0 2.3E-46 4.9E-51 402.4 24.1 251 113-378 427-677 (693)
20 KOG0733 Nuclear AAA ATPase (VC 100.0 4.1E-46 9E-51 393.7 24.9 270 109-379 500-773 (802)
21 KOG0731 AAA+-type ATPase conta 100.0 6.6E-45 1.4E-49 403.5 22.5 249 388-662 306-556 (774)
22 KOG0737 AAA+-type ATPase [Post 100.0 6.3E-45 1.4E-49 368.4 20.1 287 389-680 88-382 (386)
23 PTZ00454 26S protease regulato 100.0 2.1E-44 4.5E-49 387.7 23.7 253 385-662 137-389 (398)
24 COG1223 Predicted ATPase (AAA+ 100.0 1.4E-43 3.1E-48 339.4 17.1 244 387-663 115-359 (368)
25 COG0465 HflB ATP-dependent Zn 100.0 2.4E-43 5.2E-48 385.7 19.5 246 387-658 144-389 (596)
26 PRK03992 proteasome-activating 100.0 2.5E-42 5.4E-47 374.2 23.9 257 384-665 122-378 (389)
27 KOG0736 Peroxisome assembly fa 100.0 5.9E-42 1.3E-46 371.0 24.1 267 112-379 664-936 (953)
28 PTZ00361 26 proteosome regulat 100.0 5.5E-42 1.2E-46 370.5 21.4 251 385-660 175-425 (438)
29 KOG0741 AAA+-type ATPase [Post 100.0 1.7E-42 3.8E-47 360.4 15.8 277 385-672 211-505 (744)
30 KOG0740 AAA+-type ATPase [Post 100.0 1.4E-41 3.1E-46 357.4 16.1 279 385-681 145-426 (428)
31 KOG0738 AAA+-type ATPase [Post 100.0 2.5E-40 5.4E-45 334.0 22.4 263 114-380 206-474 (491)
32 COG1223 Predicted ATPase (AAA+ 100.0 3E-39 6.6E-44 309.7 25.5 304 45-376 50-356 (368)
33 KOG0728 26S proteasome regulat 100.0 8.3E-40 1.8E-44 311.6 21.2 246 113-375 140-388 (404)
34 KOG0651 26S proteasome regulat 100.0 4.4E-41 9.6E-46 330.5 12.5 247 388-659 127-373 (388)
35 KOG0734 AAA+-type ATPase conta 100.0 1.2E-39 2.6E-44 339.7 21.0 243 114-374 298-540 (752)
36 TIGR01241 FtsH_fam ATP-depende 100.0 2E-39 4.3E-44 363.8 23.5 250 385-660 47-296 (495)
37 KOG0652 26S proteasome regulat 100.0 7.3E-39 1.6E-43 306.8 23.2 294 65-375 103-412 (424)
38 TIGR03689 pup_AAA proteasome A 100.0 4.8E-39 1E-43 351.7 22.8 251 385-658 174-477 (512)
39 KOG0727 26S proteasome regulat 100.0 5.8E-39 1.3E-43 306.2 20.3 246 113-375 148-396 (408)
40 KOG0726 26S proteasome regulat 100.0 3.1E-39 6.7E-44 314.0 16.4 246 113-375 178-426 (440)
41 TIGR01242 26Sp45 26S proteasom 100.0 1.5E-38 3.3E-43 343.7 23.2 250 385-659 114-363 (364)
42 KOG0729 26S proteasome regulat 100.0 8.1E-39 1.7E-43 307.4 18.1 246 113-375 170-418 (435)
43 KOG0732 AAA+-type ATPase conta 100.0 3.9E-38 8.4E-43 357.9 23.3 445 115-578 260-727 (1080)
44 CHL00176 ftsH cell division pr 100.0 6.7E-38 1.4E-42 354.2 23.1 246 388-659 178-423 (638)
45 KOG0735 AAA+-type ATPase [Post 100.0 1.5E-37 3.2E-42 333.7 23.1 230 115-344 662-891 (952)
46 PRK10733 hflB ATP-dependent me 100.0 2.8E-36 6E-41 345.6 23.0 247 389-661 148-394 (644)
47 PTZ00454 26S protease regulato 100.0 1E-35 2.2E-40 320.4 25.5 246 113-375 138-386 (398)
48 KOG0739 AAA+-type ATPase [Post 100.0 3.3E-36 7.1E-41 293.8 17.3 228 113-343 126-355 (439)
49 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.5E-36 1.2E-40 352.8 21.7 198 412-618 1615-1861(2281)
50 KOG0732 AAA+-type ATPase conta 100.0 1.4E-36 2.9E-41 345.4 15.5 265 388-664 260-530 (1080)
51 KOG0731 AAA+-type ATPase conta 100.0 1.2E-35 2.6E-40 329.9 22.6 242 115-374 306-552 (774)
52 KOG0737 AAA+-type ATPase [Post 100.0 1.6E-35 3.4E-40 300.2 19.7 229 115-345 87-318 (386)
53 TIGR01243 CDC48 AAA family ATP 100.0 2.9E-34 6.2E-39 336.5 26.8 266 114-379 447-714 (733)
54 PLN00020 ribulose bisphosphate 100.0 3.2E-34 6.9E-39 293.8 22.8 190 422-617 143-354 (413)
55 PRK03992 proteasome-activating 100.0 4.5E-34 9.8E-39 309.7 25.1 251 113-380 124-377 (389)
56 TIGR02639 ClpA ATP-dependent C 100.0 5.5E-33 1.2E-37 324.5 35.1 437 117-619 179-716 (731)
57 PTZ00361 26 proteosome regulat 100.0 5.2E-34 1.1E-38 308.6 23.2 246 113-375 176-424 (438)
58 COG0464 SpoVK ATPases of the A 100.0 1.2E-33 2.6E-38 318.4 25.6 249 114-378 236-486 (494)
59 PRK11034 clpA ATP-dependent Cl 100.0 2.4E-32 5.3E-37 314.1 33.2 447 118-619 184-720 (758)
60 COG0465 HflB ATP-dependent Zn 100.0 2.8E-33 6.1E-38 306.7 20.6 230 114-344 144-376 (596)
61 CHL00195 ycf46 Ycf46; Provisio 100.0 9.4E-32 2E-36 295.4 25.9 242 115-379 223-467 (489)
62 TIGR01242 26Sp45 26S proteasom 100.0 3.4E-31 7.4E-36 286.4 28.1 245 113-374 115-362 (364)
63 KOG0651 26S proteasome regulat 100.0 2.2E-32 4.9E-37 269.2 13.7 229 113-341 125-356 (388)
64 TIGR01241 FtsH_fam ATP-depende 100.0 3.3E-31 7.2E-36 297.4 24.0 244 114-375 49-295 (495)
65 TIGR03689 pup_AAA proteasome A 100.0 1.3E-30 2.9E-35 285.4 22.2 221 113-339 175-411 (512)
66 CHL00176 ftsH cell division pr 100.0 3.2E-30 6.9E-35 291.9 22.6 243 115-375 178-423 (638)
67 TIGR03345 VI_ClpV1 type VI sec 100.0 3.5E-28 7.6E-33 285.4 35.9 445 116-619 183-835 (852)
68 CHL00095 clpC Clp protease ATP 100.0 1.1E-27 2.4E-32 282.9 37.4 452 118-619 177-786 (821)
69 PRK10865 protein disaggregatio 100.0 8.5E-28 1.8E-32 283.2 33.5 456 117-619 175-833 (857)
70 KOG0740 AAA+-type ATPase [Post 100.0 2.3E-29 4.9E-34 265.3 18.0 260 113-379 146-408 (428)
71 TIGR03346 chaperone_ClpB ATP-d 100.0 5.4E-27 1.2E-31 277.8 37.1 456 118-620 171-831 (852)
72 PRK10733 hflB ATP-dependent me 100.0 2.7E-28 5.8E-33 279.9 23.9 243 116-376 148-393 (644)
73 COG0542 clpA ATP-binding subun 100.0 3.3E-27 7.1E-32 265.2 31.9 454 117-619 167-759 (786)
74 PLN00020 ribulose bisphosphate 100.0 2.9E-28 6.4E-33 250.1 20.5 199 118-321 113-330 (413)
75 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.1E-28 6.8E-33 287.8 20.9 195 143-343 1619-1862(2281)
76 KOG0743 AAA+-type ATPase [Post 99.9 1.6E-24 3.4E-29 226.5 15.5 226 385-620 194-429 (457)
77 KOG0744 AAA+-type ATPase [Post 99.9 2.8E-24 6.1E-29 213.1 10.0 239 391-658 140-413 (423)
78 CHL00181 cbbX CbbX; Provisiona 99.9 9.3E-23 2E-27 211.6 17.2 216 392-620 22-260 (287)
79 TIGR02881 spore_V_K stage V sp 99.9 4.7E-22 1E-26 205.3 16.6 214 392-619 5-243 (261)
80 TIGR02880 cbbX_cfxQ probable R 99.9 3E-22 6.6E-27 208.1 14.6 213 394-619 23-258 (284)
81 PF00004 AAA: ATPase family as 99.9 3.5E-22 7.7E-27 184.1 12.9 130 430-563 1-132 (132)
82 KOG0742 AAA+-type ATPase [Post 99.9 2.1E-21 4.5E-26 197.8 15.1 180 424-610 381-588 (630)
83 PF00004 AAA: ATPase family as 99.8 2.6E-19 5.6E-24 164.9 15.3 130 157-287 1-132 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.8 1.1E-17 2.5E-22 173.6 18.1 212 120-342 23-258 (287)
85 TIGR02880 cbbX_cfxQ probable R 99.8 1.5E-17 3.3E-22 172.9 17.6 209 121-339 23-254 (284)
86 TIGR00763 lon ATP-dependent pr 99.8 1E-17 2.3E-22 197.3 18.3 204 393-617 320-557 (775)
87 PF05496 RuvB_N: Holliday junc 99.7 1.6E-17 3.4E-22 161.0 14.6 189 389-610 20-225 (233)
88 TIGR02639 ClpA ATP-dependent C 99.7 2.3E-17 5E-22 193.4 17.5 244 391-680 180-454 (731)
89 TIGR02881 spore_V_K stage V sp 99.7 5.5E-17 1.2E-21 167.5 18.0 175 119-304 5-194 (261)
90 TIGR00635 ruvB Holliday juncti 99.7 5E-16 1.1E-20 164.6 20.7 192 391-615 2-210 (305)
91 PRK00080 ruvB Holliday junctio 99.7 6.9E-16 1.5E-20 164.8 21.7 233 389-679 21-273 (328)
92 KOG0744 AAA+-type ATPase [Post 99.7 4.1E-17 9E-22 162.5 10.4 148 152-301 175-340 (423)
93 KOG0742 AAA+-type ATPase [Post 99.7 3.4E-16 7.3E-21 160.0 16.3 178 153-335 383-589 (630)
94 PRK11034 clpA ATP-dependent Cl 99.7 2.2E-16 4.7E-21 182.6 16.0 176 427-614 207-409 (758)
95 KOG2004 Mitochondrial ATP-depe 99.7 1.2E-16 2.7E-21 173.7 12.5 165 393-578 411-597 (906)
96 COG0466 Lon ATP-dependent Lon 99.7 5.7E-16 1.2E-20 169.9 17.4 201 393-623 323-550 (782)
97 COG2256 MGS1 ATPase related to 99.7 2.5E-15 5.3E-20 155.2 19.5 229 389-686 20-265 (436)
98 COG2255 RuvB Holliday junction 99.7 3.9E-15 8.4E-20 146.7 19.0 232 389-678 22-273 (332)
99 KOG0743 AAA+-type ATPase [Post 99.7 1.1E-15 2.4E-20 160.6 15.7 177 118-302 199-384 (457)
100 KOG1051 Chaperone HSP104 and r 99.7 2.4E-14 5.2E-19 164.0 28.0 160 119-301 185-363 (898)
101 PF05496 RuvB_N: Holliday junc 99.6 2.2E-15 4.7E-20 146.2 14.6 181 113-322 17-214 (233)
102 PRK05342 clpX ATP-dependent pr 99.6 4.3E-15 9.4E-20 161.0 17.5 222 395-618 73-382 (412)
103 PRK10787 DNA-binding ATP-depen 99.6 1.5E-14 3.2E-19 168.8 20.4 204 393-618 322-559 (784)
104 TIGR00390 hslU ATP-dependent p 99.6 1.2E-14 2.6E-19 153.9 15.2 176 394-573 13-342 (441)
105 TIGR00382 clpX endopeptidase C 99.6 1.6E-14 3.4E-19 155.6 16.2 223 394-618 78-388 (413)
106 TIGR00763 lon ATP-dependent pr 99.6 2.4E-14 5.3E-19 168.9 18.7 163 121-301 321-505 (775)
107 PRK07003 DNA polymerase III su 99.6 4.3E-14 9.4E-19 158.6 19.1 187 389-613 12-227 (830)
108 PRK12323 DNA polymerase III su 99.6 2E-14 4.4E-19 159.4 15.6 186 389-612 12-231 (700)
109 TIGR02902 spore_lonB ATP-depen 99.6 4.2E-14 9E-19 159.4 18.0 210 389-658 61-331 (531)
110 PRK10865 protein disaggregatio 99.6 1.5E-14 3.3E-19 171.2 15.1 165 391-581 176-358 (857)
111 TIGR03345 VI_ClpV1 type VI sec 99.6 1.5E-14 3.3E-19 170.6 14.5 183 390-598 184-389 (852)
112 PRK13342 recombination factor 99.6 7.1E-14 1.5E-18 153.8 18.7 180 390-611 9-201 (413)
113 PRK14962 DNA polymerase III su 99.6 8.6E-14 1.9E-18 153.7 19.3 183 389-609 10-221 (472)
114 TIGR02928 orc1/cdc6 family rep 99.6 7.3E-14 1.6E-18 152.0 18.6 203 393-617 15-257 (365)
115 TIGR00362 DnaA chromosomal rep 99.6 3.6E-14 7.9E-19 156.1 16.3 173 427-616 136-320 (405)
116 PRK00149 dnaA chromosomal repl 99.6 2.7E-14 5.9E-19 159.0 15.4 174 427-616 148-332 (450)
117 PRK14956 DNA polymerase III su 99.6 5.6E-14 1.2E-18 152.6 15.8 183 389-609 14-225 (484)
118 PRK00411 cdc6 cell division co 99.5 1.3E-13 2.8E-18 151.7 18.6 203 393-617 30-265 (394)
119 PRK04195 replication factor C 99.5 7.1E-14 1.5E-18 156.8 16.4 191 389-614 10-207 (482)
120 PRK05201 hslU ATP-dependent pr 99.5 3.6E-14 7.8E-19 150.3 13.0 176 394-573 16-344 (443)
121 PRK07940 DNA polymerase III su 99.5 5.4E-14 1.2E-18 151.8 14.6 185 391-606 3-214 (394)
122 PRK00080 ruvB Holliday junctio 99.5 3.2E-13 7E-18 144.3 20.4 191 113-333 18-225 (328)
123 COG2255 RuvB Holliday junction 99.5 1.5E-13 3.2E-18 135.7 16.0 181 113-322 19-216 (332)
124 TIGR00635 ruvB Holliday juncti 99.5 4E-13 8.6E-18 142.5 20.3 187 118-334 2-205 (305)
125 TIGR03346 chaperone_ClpB ATP-d 99.5 5.3E-14 1.1E-18 167.5 14.7 182 391-598 171-375 (852)
126 PRK14960 DNA polymerase III su 99.5 2.2E-13 4.8E-18 151.6 18.2 186 389-612 11-225 (702)
127 PRK14961 DNA polymerase III su 99.5 2.9E-13 6.3E-18 146.3 18.4 186 389-612 12-226 (363)
128 CHL00095 clpC Clp protease ATP 99.5 4.6E-14 9.9E-19 167.6 13.0 185 390-600 176-382 (821)
129 PRK12422 chromosomal replicati 99.5 1.5E-13 3.2E-18 151.1 15.9 170 427-612 141-319 (445)
130 PRK14949 DNA polymerase III su 99.5 3.4E-13 7.3E-18 154.4 19.1 185 389-611 12-225 (944)
131 KOG2004 Mitochondrial ATP-depe 99.5 1.1E-13 2.4E-18 151.1 13.2 164 120-301 411-596 (906)
132 PRK14088 dnaA chromosomal repl 99.5 1.7E-13 3.8E-18 151.0 15.0 172 428-615 131-314 (440)
133 PRK14086 dnaA chromosomal repl 99.5 3.2E-13 7E-18 150.5 16.7 172 428-616 315-498 (617)
134 COG2256 MGS1 ATPase related to 99.5 3.3E-13 7.2E-18 139.6 15.5 149 113-299 17-174 (436)
135 PRK06645 DNA polymerase III su 99.5 7.7E-13 1.7E-17 146.7 18.9 189 388-614 16-237 (507)
136 PRK07994 DNA polymerase III su 99.5 4.2E-13 9E-18 151.7 16.9 185 389-611 12-225 (647)
137 PF05673 DUF815: Protein of un 99.5 1.1E-12 2.4E-17 129.3 17.4 192 386-608 20-243 (249)
138 PTZ00112 origin recognition co 99.5 4.5E-13 9.8E-18 150.7 16.3 167 430-612 784-987 (1164)
139 PRK14958 DNA polymerase III su 99.5 2.8E-13 6.1E-18 151.2 14.3 187 389-613 12-227 (509)
140 PRK05563 DNA polymerase III su 99.5 2.1E-12 4.6E-17 146.2 21.2 187 389-613 12-227 (559)
141 PRK13341 recombination factor 99.5 6.6E-13 1.4E-17 153.2 16.6 181 389-611 24-222 (725)
142 PRK12402 replication factor C 99.5 1.3E-12 2.9E-17 140.5 17.7 188 389-612 11-229 (337)
143 PRK08691 DNA polymerase III su 99.5 1.6E-12 3.4E-17 146.3 18.1 187 389-613 12-227 (709)
144 PRK14959 DNA polymerase III su 99.5 1.1E-12 2.3E-17 147.1 16.4 183 389-609 12-223 (624)
145 PRK14964 DNA polymerase III su 99.5 1.3E-12 2.9E-17 143.6 16.8 187 389-613 9-224 (491)
146 PLN03025 replication factor C 99.5 1.2E-12 2.5E-17 139.4 15.9 180 389-610 9-201 (319)
147 PRK14963 DNA polymerase III su 99.5 1.4E-12 3.1E-17 145.2 17.1 183 389-609 10-220 (504)
148 TIGR02903 spore_lon_C ATP-depe 99.4 5.9E-12 1.3E-16 144.2 22.5 223 389-660 150-431 (615)
149 PRK07764 DNA polymerase III su 99.4 1.8E-12 4E-17 151.3 18.4 185 389-611 11-226 (824)
150 PRK14952 DNA polymerase III su 99.4 1.5E-12 3.3E-17 146.5 16.7 187 389-613 9-226 (584)
151 PRK06893 DNA replication initi 99.4 9.4E-13 2E-17 133.0 13.3 159 429-610 41-207 (229)
152 TIGR02397 dnaX_nterm DNA polym 99.4 2.7E-12 5.8E-17 139.2 17.8 188 388-613 9-225 (355)
153 PRK14951 DNA polymerase III su 99.4 3.7E-12 8.1E-17 143.8 19.3 187 389-613 12-232 (618)
154 PHA02544 44 clamp loader, smal 99.4 1.4E-12 3.1E-17 138.9 15.0 156 389-577 17-173 (316)
155 COG0466 Lon ATP-dependent Lon 99.4 1.7E-12 3.7E-17 143.0 15.0 164 120-301 323-508 (782)
156 KOG0989 Replication factor C, 99.4 9E-12 2E-16 124.5 18.3 180 388-606 31-227 (346)
157 PRK14087 dnaA chromosomal repl 99.4 2.2E-12 4.7E-17 142.5 15.4 173 427-616 141-329 (450)
158 PRK14957 DNA polymerase III su 99.4 4.1E-12 8.8E-17 141.8 17.1 185 389-611 12-225 (546)
159 PRK07133 DNA polymerase III su 99.4 1.3E-11 2.8E-16 140.5 20.5 191 388-611 13-224 (725)
160 PRK05896 DNA polymerase III su 99.4 8.9E-12 1.9E-16 139.0 18.9 186 389-612 12-226 (605)
161 PRK14969 DNA polymerase III su 99.4 2.1E-12 4.5E-17 145.2 13.9 185 389-611 12-225 (527)
162 COG1474 CDC6 Cdc6-related prot 99.4 8.1E-12 1.7E-16 133.7 17.1 177 427-618 42-249 (366)
163 PRK14953 DNA polymerase III su 99.4 5.6E-12 1.2E-16 140.1 16.2 187 389-613 12-227 (486)
164 TIGR03420 DnaA_homol_Hda DnaA 99.4 4.5E-12 9.8E-17 128.2 14.2 166 427-617 38-212 (226)
165 PRK14956 DNA polymerase III su 99.4 1E-11 2.2E-16 135.1 17.2 176 113-322 11-215 (484)
166 PRK10787 DNA-binding ATP-depen 99.4 5E-11 1.1E-15 139.6 24.3 162 121-301 323-506 (784)
167 PRK07003 DNA polymerase III su 99.4 1.4E-11 3.1E-16 138.6 17.9 177 113-323 9-214 (830)
168 PRK14965 DNA polymerase III su 99.4 8.3E-12 1.8E-16 142.1 16.4 181 389-607 12-221 (576)
169 PRK08903 DnaA regulatory inact 99.4 1.5E-11 3.2E-16 124.5 16.5 158 426-614 41-207 (227)
170 PRK14970 DNA polymerase III su 99.4 1.5E-11 3.3E-16 133.8 17.3 190 389-611 13-214 (367)
171 PRK06305 DNA polymerase III su 99.4 1.3E-11 2.7E-16 136.5 16.7 183 389-609 13-225 (451)
172 PRK08084 DNA replication initi 99.4 1.2E-11 2.6E-16 125.5 15.0 158 428-610 46-213 (235)
173 PRK04195 replication factor C 99.4 1.8E-11 3.8E-16 137.5 17.9 188 113-333 7-202 (482)
174 PRK12323 DNA polymerase III su 99.4 1.1E-11 2.4E-16 137.8 15.8 185 113-332 9-227 (700)
175 KOG2028 ATPase related to the 99.3 2.1E-11 4.5E-16 123.8 16.1 209 428-686 163-395 (554)
176 PRK05642 DNA replication initi 99.3 1.8E-11 3.9E-16 124.0 15.9 160 428-612 46-214 (234)
177 COG1224 TIP49 DNA helicase TIP 99.3 4.4E-11 9.6E-16 121.5 18.2 99 533-659 321-432 (450)
178 PRK06647 DNA polymerase III su 99.3 1.2E-11 2.5E-16 139.6 15.5 183 389-609 12-223 (563)
179 PRK09111 DNA polymerase III su 99.3 3E-11 6.4E-16 137.0 18.3 193 389-613 20-240 (598)
180 PRK14962 DNA polymerase III su 99.3 3.1E-11 6.7E-16 133.5 18.0 174 113-321 7-210 (472)
181 COG0593 DnaA ATPase involved i 99.3 1.9E-11 4.2E-16 130.1 15.4 176 426-618 112-298 (408)
182 PRK08451 DNA polymerase III su 99.3 2.2E-11 4.8E-16 135.2 16.5 188 389-614 10-226 (535)
183 PRK07940 DNA polymerase III su 99.3 3.2E-11 6.9E-16 130.4 17.1 184 118-329 3-213 (394)
184 PRK08727 hypothetical protein; 99.3 3.2E-11 6.9E-16 122.2 15.7 158 428-610 42-208 (233)
185 TIGR02928 orc1/cdc6 family rep 99.3 1.4E-10 3E-15 126.3 21.7 164 120-302 15-213 (365)
186 PF00308 Bac_DnaA: Bacterial d 99.3 7.9E-12 1.7E-16 125.1 10.9 170 428-614 35-216 (219)
187 TIGR02902 spore_lonB ATP-depen 99.3 4.2E-11 9.1E-16 135.2 17.8 216 113-374 58-331 (531)
188 PRK13342 recombination factor 99.3 5.7E-11 1.2E-15 130.8 17.9 170 113-321 5-188 (413)
189 PRK14948 DNA polymerase III su 99.3 5.9E-11 1.3E-15 135.5 18.4 182 389-608 12-224 (620)
190 PRK14954 DNA polymerase III su 99.3 5E-11 1.1E-15 135.3 17.7 188 389-614 12-236 (620)
191 TIGR02640 gas_vesic_GvpN gas v 99.3 1.7E-11 3.7E-16 126.5 12.6 132 427-577 21-198 (262)
192 PRK00411 cdc6 cell division co 99.3 1.7E-10 3.7E-15 127.0 21.3 220 119-375 29-282 (394)
193 COG1219 ClpX ATP-dependent pro 99.3 5.3E-11 1.1E-15 119.2 15.1 131 394-527 62-203 (408)
194 TIGR00390 hslU ATP-dependent p 99.3 2.2E-11 4.8E-16 129.3 13.0 175 122-298 14-343 (441)
195 TIGR01650 PD_CobS cobaltochela 99.3 2.6E-11 5.6E-16 125.9 12.8 142 424-579 61-235 (327)
196 PRK14955 DNA polymerase III su 99.3 2.3E-11 4.9E-16 133.1 13.1 186 389-612 12-234 (397)
197 PRK00440 rfc replication facto 99.3 5.8E-11 1.3E-15 126.7 15.9 184 389-611 13-208 (319)
198 PRK00149 dnaA chromosomal repl 99.3 4.6E-11 9.9E-16 133.2 15.5 154 155-321 149-314 (450)
199 PRK06620 hypothetical protein; 99.3 3.3E-11 7.2E-16 120.0 12.9 144 428-610 45-193 (214)
200 TIGR03420 DnaA_homol_Hda DnaA 99.3 1.7E-10 3.7E-15 116.7 18.3 186 117-335 12-206 (226)
201 PRK14960 DNA polymerase III su 99.3 1.2E-10 2.7E-15 130.0 18.1 185 113-332 8-221 (702)
202 PRK14949 DNA polymerase III su 99.3 1.5E-10 3.3E-15 132.9 19.2 191 113-332 9-222 (944)
203 PRK05201 hslU ATP-dependent pr 99.3 2.5E-11 5.3E-16 129.0 11.7 175 122-298 17-345 (443)
204 PRK07994 DNA polymerase III su 99.3 1.6E-10 3.6E-15 130.9 19.0 185 113-332 9-222 (647)
205 PF05673 DUF815: Protein of un 99.3 3.2E-10 7E-15 112.0 18.6 167 113-307 20-213 (249)
206 PRK05342 clpX ATP-dependent pr 99.3 2.5E-10 5.5E-15 124.0 19.5 217 122-340 73-380 (412)
207 cd00009 AAA The AAA+ (ATPases 99.3 5.3E-11 1.1E-15 110.9 12.4 122 426-563 18-151 (151)
208 PLN03025 replication factor C 99.3 1.4E-10 3.1E-15 123.3 17.2 182 113-333 6-200 (319)
209 PRK06645 DNA polymerase III su 99.2 2.8E-10 6E-15 126.5 19.1 193 113-334 14-233 (507)
210 TIGR00362 DnaA chromosomal rep 99.2 1.1E-10 2.4E-15 128.6 15.8 167 154-333 136-313 (405)
211 PHA02544 44 clamp loader, smal 99.2 1.4E-10 3.1E-15 123.5 16.3 158 113-300 14-172 (316)
212 PRK14961 DNA polymerase III su 99.2 2.5E-10 5.5E-15 123.5 18.2 175 113-321 9-212 (363)
213 PTZ00112 origin recognition co 99.2 2.9E-10 6.3E-15 128.5 18.9 180 120-319 755-968 (1164)
214 PRK14950 DNA polymerase III su 99.2 1.2E-10 2.5E-15 133.4 15.8 183 389-609 12-224 (585)
215 KOG2028 ATPase related to the 99.2 3E-10 6.6E-15 115.5 16.4 182 113-332 131-339 (554)
216 KOG1969 DNA replication checkp 99.2 2.4E-10 5.2E-15 125.9 16.5 171 425-618 324-519 (877)
217 PRK14971 DNA polymerase III su 99.2 3.6E-10 7.7E-15 129.1 18.5 184 389-610 13-226 (614)
218 PRK06893 DNA replication initi 99.2 2.8E-10 6E-15 115.1 15.7 147 155-321 40-195 (229)
219 PRK14088 dnaA chromosomal repl 99.2 1.8E-10 3.8E-15 127.3 15.1 156 155-321 131-297 (440)
220 PRK13407 bchI magnesium chelat 99.2 1.2E-10 2.7E-15 122.8 13.3 160 389-577 4-216 (334)
221 PRK14958 DNA polymerase III su 99.2 2.5E-10 5.5E-15 127.7 16.5 186 113-333 9-223 (509)
222 COG2607 Predicted ATPase (AAA+ 99.2 7.9E-10 1.7E-14 106.9 17.4 169 385-584 52-246 (287)
223 PRK14086 dnaA chromosomal repl 99.2 2.6E-10 5.6E-15 127.5 16.2 156 155-321 315-480 (617)
224 PRK14964 DNA polymerase III su 99.2 4.4E-10 9.5E-15 123.9 17.8 186 113-333 6-220 (491)
225 PRK08691 DNA polymerase III su 99.2 3.5E-10 7.6E-15 127.6 17.2 193 113-334 9-224 (709)
226 PRK14963 DNA polymerase III su 99.2 7.4E-10 1.6E-14 123.7 19.4 175 113-321 7-209 (504)
227 PRK12402 replication factor C 99.2 1.2E-09 2.5E-14 117.6 20.3 189 113-334 8-227 (337)
228 COG2812 DnaX DNA polymerase II 99.2 8.7E-11 1.9E-15 128.8 11.3 193 389-613 12-227 (515)
229 TIGR02640 gas_vesic_GvpN gas v 99.2 7.4E-10 1.6E-14 114.3 17.4 133 153-301 20-198 (262)
230 cd00009 AAA The AAA+ (ATPases 99.2 5.4E-10 1.2E-14 104.0 14.8 121 153-286 18-150 (151)
231 PRK14959 DNA polymerase III su 99.2 4.4E-10 9.6E-15 126.3 16.5 176 113-322 9-213 (624)
232 PRK08084 DNA replication initi 99.2 2.1E-09 4.6E-14 109.0 19.7 148 155-322 46-202 (235)
233 TIGR00678 holB DNA polymerase 99.2 3.6E-10 7.7E-15 110.9 13.6 143 426-597 13-183 (188)
234 PRK07764 DNA polymerase III su 99.2 7.8E-10 1.7E-14 129.5 18.6 175 113-321 8-213 (824)
235 PHA02244 ATPase-like protein 99.2 5.4E-10 1.2E-14 117.2 15.3 122 427-568 119-265 (383)
236 PF00308 Bac_DnaA: Bacterial d 99.2 5.2E-10 1.1E-14 112.0 14.6 155 155-321 35-200 (219)
237 PRK14957 DNA polymerase III su 99.2 1.2E-09 2.7E-14 122.0 18.9 175 113-321 9-212 (546)
238 PRK08727 hypothetical protein; 99.2 1.2E-09 2.6E-14 110.7 17.2 145 155-321 42-196 (233)
239 PRK08903 DnaA regulatory inact 99.2 1.8E-09 3.9E-14 109.3 18.5 168 116-321 14-191 (227)
240 PRK14952 DNA polymerase III su 99.2 1.4E-09 3E-14 122.9 19.2 175 113-321 6-211 (584)
241 PRK12422 chromosomal replicati 99.1 5E-10 1.1E-14 123.4 15.0 155 155-321 142-305 (445)
242 TIGR00382 clpX endopeptidase C 99.1 1.8E-09 3.9E-14 116.7 18.9 217 122-340 79-386 (413)
243 PRK05896 DNA polymerase III su 99.1 7.6E-10 1.6E-14 123.8 16.4 175 113-321 9-212 (605)
244 PRK14951 DNA polymerase III su 99.1 1.1E-09 2.3E-14 124.1 17.8 181 113-321 9-217 (618)
245 PRK09087 hypothetical protein; 99.1 3.1E-10 6.7E-15 114.1 11.8 135 429-596 46-186 (226)
246 PRK09112 DNA polymerase III su 99.1 1.2E-09 2.5E-14 116.8 16.8 190 389-611 19-245 (351)
247 KOG0989 Replication factor C, 99.1 6.8E-10 1.5E-14 111.2 13.8 177 113-321 29-222 (346)
248 PRK14969 DNA polymerase III su 99.1 7.3E-10 1.6E-14 124.8 15.9 186 113-333 9-223 (527)
249 PF07728 AAA_5: AAA domain (dy 99.1 3.3E-11 7.2E-16 112.0 4.2 109 429-555 1-139 (139)
250 PF07724 AAA_2: AAA domain (Cd 99.1 9.3E-11 2E-15 112.4 7.1 112 426-542 2-130 (171)
251 PRK13341 recombination factor 99.1 1.5E-09 3.2E-14 125.7 18.3 170 113-321 21-209 (725)
252 COG0714 MoxR-like ATPases [Gen 99.1 4.1E-10 9E-15 120.4 12.8 131 427-577 43-203 (329)
253 PRK05563 DNA polymerase III su 99.1 1.6E-09 3.6E-14 122.9 18.2 175 113-321 9-212 (559)
254 PRK07133 DNA polymerase III su 99.1 2E-09 4.3E-14 122.8 18.7 181 113-321 11-211 (725)
255 CHL00081 chlI Mg-protoporyphyr 99.1 9.1E-10 2E-14 116.4 14.6 161 388-577 12-232 (350)
256 smart00382 AAA ATPases associa 99.1 3.6E-10 7.8E-15 104.4 10.2 126 428-564 3-147 (148)
257 PRK11331 5-methylcytosine-spec 99.1 4.4E-10 9.5E-15 121.0 12.1 121 427-563 194-357 (459)
258 COG0542 clpA ATP-binding subun 99.1 5.1E-10 1.1E-14 127.4 12.9 168 390-582 167-351 (786)
259 TIGR02397 dnaX_nterm DNA polym 99.1 2.2E-09 4.8E-14 116.4 17.2 175 113-321 7-210 (355)
260 TIGR02030 BchI-ChlI magnesium 99.1 9.8E-10 2.1E-14 116.3 13.8 155 391-577 2-219 (337)
261 KOG0745 Putative ATP-dependent 99.1 3.2E-09 7E-14 110.5 17.0 100 428-527 227-332 (564)
262 PRK14953 DNA polymerase III su 99.1 3.4E-09 7.5E-14 118.0 18.3 181 113-321 9-212 (486)
263 PRK05642 DNA replication initi 99.1 3.3E-09 7.1E-14 107.5 16.5 147 155-321 46-200 (234)
264 PRK07471 DNA polymerase III su 99.1 6.9E-09 1.5E-13 111.4 19.8 185 389-608 15-240 (365)
265 PRK14970 DNA polymerase III su 99.1 2.9E-09 6.3E-14 115.9 17.1 179 113-320 10-200 (367)
266 PRK05564 DNA polymerase III su 99.1 1.9E-09 4.1E-14 114.5 15.1 169 391-597 2-182 (313)
267 TIGR00764 lon_rel lon-related 99.1 1.9E-09 4.2E-14 123.2 15.4 84 385-483 10-103 (608)
268 PRK06647 DNA polymerase III su 99.1 4.6E-09 1E-13 118.7 18.3 175 113-321 9-212 (563)
269 PRK14965 DNA polymerase III su 99.1 3.2E-09 6.9E-14 121.1 16.7 175 113-321 9-212 (576)
270 TIGR01650 PD_CobS cobaltochela 99.1 4.4E-10 9.5E-15 116.8 8.8 136 153-302 63-234 (327)
271 PRK06305 DNA polymerase III su 99.0 7.3E-09 1.6E-13 114.6 19.0 175 113-321 10-214 (451)
272 COG1474 CDC6 Cdc6-related prot 99.0 1.3E-08 2.9E-13 109.0 20.0 163 120-302 17-204 (366)
273 PHA02244 ATPase-like protein 99.0 1.2E-08 2.7E-13 107.1 19.1 122 153-290 118-263 (383)
274 PRK14087 dnaA chromosomal repl 99.0 2.9E-09 6.4E-14 117.7 15.3 169 155-334 142-323 (450)
275 COG5271 MDN1 AAA ATPase contai 99.0 1.5E-08 3.2E-13 118.5 20.9 131 153-299 887-1045(4600)
276 TIGR02442 Cob-chelat-sub cobal 99.0 2.3E-09 5.1E-14 123.8 14.5 155 391-577 2-214 (633)
277 TIGR03015 pepcterm_ATPase puta 99.0 9.8E-09 2.1E-13 106.7 18.0 188 430-660 46-267 (269)
278 COG0488 Uup ATPase components 99.0 3E-09 6.5E-14 118.7 14.8 30 149-178 24-53 (530)
279 PF06068 TIP49: TIP49 C-termin 99.0 2.5E-09 5.4E-14 111.0 13.0 66 392-465 23-90 (398)
280 TIGR02903 spore_lon_C ATP-depe 99.0 1.7E-08 3.6E-13 116.0 21.2 164 114-304 148-369 (615)
281 PRK00440 rfc replication facto 99.0 7.4E-09 1.6E-13 110.5 17.0 174 113-321 10-195 (319)
282 PRK14948 DNA polymerase III su 99.0 1.1E-08 2.5E-13 116.9 19.1 182 113-322 9-215 (620)
283 PRK09111 DNA polymerase III su 99.0 1.1E-08 2.5E-13 116.1 18.8 191 113-332 17-235 (598)
284 PRK08451 DNA polymerase III su 99.0 1.4E-08 3E-13 113.1 18.3 186 113-333 7-221 (535)
285 KOG1969 DNA replication checkp 99.0 7.2E-09 1.6E-13 114.5 15.4 164 152-334 324-511 (877)
286 PRK07399 DNA polymerase III su 99.0 2.7E-09 5.9E-14 112.4 11.4 183 391-608 2-223 (314)
287 PRK14954 DNA polymerase III su 99.0 1.4E-08 3.1E-13 115.5 17.8 181 113-321 9-220 (620)
288 smart00382 AAA ATPases associa 99.0 3.6E-09 7.8E-14 97.6 10.6 128 154-288 2-147 (148)
289 PRK06620 hypothetical protein; 99.0 1.1E-08 2.3E-13 102.0 14.5 133 155-321 45-181 (214)
290 PRK13407 bchI magnesium chelat 99.0 3.2E-09 7E-14 112.1 10.8 158 116-300 4-215 (334)
291 PRK04132 replication factor C 99.0 1.3E-08 2.9E-13 118.4 16.8 156 430-611 567-736 (846)
292 PRK14955 DNA polymerase III su 98.9 1.4E-08 3.1E-13 111.2 16.1 181 113-321 9-220 (397)
293 PRK05707 DNA polymerase III su 98.9 7.4E-09 1.6E-13 109.7 12.9 147 426-597 21-195 (328)
294 PF07728 AAA_5: AAA domain (dy 98.9 5.8E-10 1.3E-14 103.6 3.9 109 156-279 1-139 (139)
295 COG0470 HolB ATPase involved i 98.9 6.2E-09 1.3E-13 111.3 12.2 125 429-574 26-178 (325)
296 COG1123 ATPase components of v 98.9 3.5E-09 7.6E-14 116.1 9.8 32 149-180 30-61 (539)
297 PRK14950 DNA polymerase III su 98.9 3.4E-08 7.3E-13 113.3 18.2 181 113-321 9-213 (585)
298 PRK09087 hypothetical protein; 98.9 2E-08 4.3E-13 101.0 14.3 139 155-321 45-187 (226)
299 PF01078 Mg_chelatase: Magnesi 98.9 7.6E-10 1.6E-14 107.2 3.8 142 392-567 2-205 (206)
300 COG0593 DnaA ATPase involved i 98.9 3.1E-08 6.8E-13 105.8 16.2 155 154-320 113-277 (408)
301 TIGR00368 Mg chelatase-related 98.9 2.9E-08 6.2E-13 110.6 16.5 144 390-567 189-394 (499)
302 smart00763 AAA_PrkA PrkA AAA d 98.9 2.5E-08 5.5E-13 104.9 14.9 162 394-580 52-330 (361)
303 COG2812 DnaX DNA polymerase II 98.9 1E-08 2.2E-13 112.7 12.2 194 113-335 9-225 (515)
304 PRK08058 DNA polymerase III su 98.9 7.5E-09 1.6E-13 110.3 10.8 149 391-575 3-180 (329)
305 COG1220 HslU ATP-dependent pro 98.9 1.2E-08 2.6E-13 103.3 11.3 82 488-573 252-345 (444)
306 PRK13531 regulatory ATPase Rav 98.9 8.9E-09 1.9E-13 111.9 10.2 134 427-576 39-193 (498)
307 KOG1514 Origin recognition com 98.8 6.7E-08 1.5E-12 106.8 16.7 209 429-668 424-664 (767)
308 PF07724 AAA_2: AAA domain (Cd 98.8 1.2E-08 2.6E-13 97.8 9.4 112 153-266 2-130 (171)
309 PRK09112 DNA polymerase III su 98.8 1.2E-07 2.7E-12 101.3 18.0 179 115-322 18-233 (351)
310 KOG1942 DNA helicase, TBP-inte 98.8 6.2E-08 1.3E-12 96.2 14.3 108 487-614 297-418 (456)
311 COG5271 MDN1 AAA ATPase contai 98.8 1.3E-07 2.7E-12 111.1 18.7 130 153-298 1542-1700(4600)
312 smart00350 MCM minichromosome 98.8 4E-08 8.7E-13 110.9 14.8 163 395-578 205-401 (509)
313 COG0714 MoxR-like ATPases [Gen 98.8 1.8E-08 4E-13 107.7 11.2 129 153-298 42-200 (329)
314 PF05621 TniB: Bacterial TniB 98.8 1.5E-07 3.3E-12 96.2 16.9 204 123-343 37-274 (302)
315 PRK11331 5-methylcytosine-spec 98.8 6.1E-08 1.3E-12 104.7 14.5 122 153-287 193-357 (459)
316 PF07726 AAA_3: ATPase family 98.8 2.5E-09 5.4E-14 95.0 2.9 104 429-555 1-129 (131)
317 CHL00081 chlI Mg-protoporyphyr 98.8 2.8E-08 6E-13 105.2 11.3 160 115-300 12-231 (350)
318 PRK08116 hypothetical protein; 98.8 1.3E-08 2.8E-13 105.0 8.6 129 427-574 114-257 (268)
319 PRK14971 DNA polymerase III su 98.8 1.6E-07 3.5E-12 107.6 18.3 175 113-321 10-214 (614)
320 TIGR02030 BchI-ChlI magnesium 98.8 3.5E-08 7.6E-13 104.5 11.7 157 118-300 2-218 (337)
321 PRK06964 DNA polymerase III su 98.8 2.4E-08 5.3E-13 105.7 10.5 133 425-576 19-203 (342)
322 COG2607 Predicted ATPase (AAA+ 98.8 6.6E-07 1.4E-11 87.0 19.1 167 114-308 54-246 (287)
323 TIGR00678 holB DNA polymerase 98.8 8.9E-08 1.9E-12 93.9 13.6 142 154-321 14-183 (188)
324 KOG0991 Replication factor C, 98.8 1.8E-08 3.9E-13 97.0 8.1 183 389-610 23-215 (333)
325 TIGR02031 BchD-ChlD magnesium 98.8 8.7E-08 1.9E-12 109.6 15.2 132 428-578 17-175 (589)
326 PRK11608 pspF phage shock prot 98.8 3E-08 6.6E-13 105.5 10.8 169 427-614 29-240 (326)
327 TIGR00602 rad24 checkpoint pro 98.8 1E-07 2.3E-12 108.3 15.3 201 389-616 80-330 (637)
328 TIGR02974 phageshock_pspF psp 98.7 5.3E-08 1.1E-12 103.6 11.4 169 427-614 22-233 (329)
329 PRK05564 DNA polymerase III su 98.7 2.7E-07 5.9E-12 98.0 16.4 152 118-301 2-165 (313)
330 COG1221 PspF Transcriptional r 98.7 4.1E-08 8.9E-13 104.6 9.7 199 390-618 75-313 (403)
331 KOG2227 Pre-initiation complex 98.7 5.4E-07 1.2E-11 95.5 17.8 236 395-661 152-417 (529)
332 PF13177 DNA_pol3_delta2: DNA 98.7 4.9E-08 1.1E-12 93.0 8.9 134 397-564 1-161 (162)
333 PRK07471 DNA polymerase III su 98.7 4.9E-07 1.1E-11 97.2 17.5 158 115-300 14-212 (365)
334 TIGR01817 nifA Nif-specific re 98.7 1.5E-07 3.2E-12 107.5 14.1 198 389-616 192-430 (534)
335 TIGR00602 rad24 checkpoint pro 98.7 2.6E-07 5.7E-12 105.1 15.6 198 113-334 77-324 (637)
336 COG1220 HslU ATP-dependent pro 98.7 1.6E-07 3.4E-12 95.4 12.0 83 214-298 251-346 (444)
337 PF07726 AAA_3: ATPase family 98.7 9.4E-09 2E-13 91.4 3.0 104 156-279 1-129 (131)
338 KOG0927 Predicted transporter 98.7 1.3E-07 2.8E-12 101.8 12.0 29 149-177 96-124 (614)
339 PRK13531 regulatory ATPase Rav 98.7 1.5E-07 3.2E-12 102.6 12.6 134 152-299 37-192 (498)
340 TIGR02329 propionate_PrpR prop 98.7 7.1E-08 1.5E-12 108.3 10.4 195 390-614 209-450 (526)
341 COG1219 ClpX ATP-dependent pro 98.7 5.9E-08 1.3E-12 97.7 8.4 97 154-250 97-202 (408)
342 TIGR02655 circ_KaiC circadian 98.7 2.1E-06 4.5E-11 96.6 21.7 78 423-500 259-367 (484)
343 KOG0991 Replication factor C, 98.7 2E-07 4.3E-12 89.9 11.3 134 113-275 20-162 (333)
344 COG3829 RocR Transcriptional r 98.7 1.3E-07 2.8E-12 102.5 11.3 197 389-616 241-481 (560)
345 PF01078 Mg_chelatase: Magnesi 98.7 4E-08 8.7E-13 95.3 6.7 46 119-179 2-47 (206)
346 COG1224 TIP49 DNA helicase TIP 98.7 1.4E-06 2.9E-11 89.4 17.7 63 120-190 39-103 (450)
347 PRK09862 putative ATP-dependen 98.6 4.1E-07 8.8E-12 101.0 15.2 143 391-567 189-391 (506)
348 PRK15424 propionate catabolism 98.6 1.3E-07 2.9E-12 106.0 11.2 195 390-614 216-465 (538)
349 PRK06871 DNA polymerase III su 98.6 2.4E-07 5.2E-12 97.5 12.4 129 425-576 22-178 (325)
350 KOG2680 DNA helicase TIP49, TB 98.6 9.6E-07 2.1E-11 88.2 15.1 98 534-659 319-429 (454)
351 PRK05707 DNA polymerase III su 98.6 6.5E-07 1.4E-11 94.9 14.9 147 154-322 22-196 (328)
352 PF05621 TniB: Bacterial TniB 98.6 6E-07 1.3E-11 91.9 13.9 177 427-618 61-273 (302)
353 TIGR02442 Cob-chelat-sub cobal 98.6 2.2E-07 4.8E-12 107.5 12.2 154 118-299 2-212 (633)
354 COG0470 HolB ATPase involved i 98.6 4.1E-07 8.8E-12 97.3 13.4 124 156-297 26-177 (325)
355 PRK05022 anaerobic nitric oxid 98.6 3.9E-07 8.4E-12 103.2 13.5 195 392-616 186-422 (509)
356 PRK11388 DNA-binding transcrip 98.6 2.4E-07 5.2E-12 108.2 12.2 194 391-614 323-554 (638)
357 PRK15429 formate hydrogenlyase 98.6 7.6E-07 1.7E-11 104.7 16.4 245 390-664 373-658 (686)
358 PRK08769 DNA polymerase III su 98.6 6E-07 1.3E-11 94.4 13.3 153 425-601 24-204 (319)
359 TIGR03015 pepcterm_ATPase puta 98.6 3.7E-06 8.1E-11 87.3 19.1 171 156-341 45-249 (269)
360 PRK07993 DNA polymerase III su 98.6 4E-07 8.7E-12 96.8 11.9 129 425-575 22-178 (334)
361 PRK13765 ATP-dependent proteas 98.6 5.1E-07 1.1E-11 103.1 13.2 53 385-452 23-75 (637)
362 PRK10820 DNA-binding transcrip 98.6 5.3E-07 1.1E-11 102.2 13.1 198 389-616 200-439 (520)
363 PF00158 Sigma54_activat: Sigm 98.6 3.5E-07 7.6E-12 87.4 9.9 97 428-541 23-143 (168)
364 PRK04132 replication factor C 98.5 1.1E-06 2.4E-11 102.6 15.7 150 153-324 563-726 (846)
365 PRK07399 DNA polymerase III su 98.5 1.8E-06 3.9E-11 91.1 15.9 176 118-324 2-216 (314)
366 COG2204 AtoC Response regulato 98.5 6.3E-07 1.4E-11 97.4 12.7 243 392-666 140-436 (464)
367 PRK08116 hypothetical protein; 98.5 5.3E-07 1.2E-11 93.1 11.5 123 154-290 114-251 (268)
368 COG1239 ChlI Mg-chelatase subu 98.5 2.9E-06 6.2E-11 89.8 16.7 160 390-579 14-234 (423)
369 PRK06090 DNA polymerase III su 98.5 8.1E-07 1.8E-11 93.3 12.3 129 425-575 23-178 (319)
370 PRK08181 transposase; Validate 98.5 3.1E-07 6.6E-12 94.4 8.9 71 427-499 106-180 (269)
371 PRK13409 putative ATPase RIL; 98.5 9.1E-07 2E-11 101.6 13.7 292 151-546 96-518 (590)
372 PRK08058 DNA polymerase III su 98.5 1.2E-06 2.5E-11 93.6 13.6 148 119-299 4-180 (329)
373 COG3604 FhlA Transcriptional r 98.5 4.4E-07 9.5E-12 97.1 10.2 195 389-614 219-456 (550)
374 KOG0745 Putative ATP-dependent 98.5 3.3E-07 7.1E-12 95.9 8.7 96 155-250 227-331 (564)
375 PRK08181 transposase; Validate 98.5 7.2E-07 1.6E-11 91.6 11.0 101 153-266 105-209 (269)
376 PRK08699 DNA polymerase III su 98.5 4.2E-07 9.1E-12 96.3 9.4 131 425-575 19-183 (325)
377 PF00158 Sigma54_activat: Sigm 98.5 1.5E-06 3.3E-11 83.1 12.2 130 122-279 1-154 (168)
378 PRK13549 xylose transporter AT 98.5 7.1E-07 1.5E-11 101.4 11.9 31 149-179 26-56 (506)
379 PF13173 AAA_14: AAA domain 98.5 7.9E-07 1.7E-11 81.3 9.9 119 428-568 3-126 (128)
380 PRK10636 putative ABC transpor 98.5 1.6E-07 3.5E-12 109.2 6.5 30 149-178 22-51 (638)
381 PRK09183 transposase/IS protei 98.5 3.4E-07 7.4E-12 94.1 7.7 71 427-498 102-176 (259)
382 PRK07952 DNA replication prote 98.4 4.7E-07 1E-11 91.6 8.1 100 428-542 100-205 (244)
383 PRK11147 ABC transporter ATPas 98.4 2.4E-07 5.1E-12 108.0 6.9 30 149-178 24-53 (635)
384 PRK15439 autoinducer 2 ABC tra 98.4 5.6E-07 1.2E-11 102.3 9.5 30 149-178 32-61 (510)
385 PRK06526 transposase; Provisio 98.4 8.3E-07 1.8E-11 90.7 9.5 73 152-226 96-172 (254)
386 PF03215 Rad17: Rad17 cell cyc 98.4 4.2E-06 9.1E-11 93.7 15.6 173 427-615 45-269 (519)
387 PF13173 AAA_14: AAA domain 98.4 1.5E-06 3.2E-11 79.4 10.0 69 155-225 3-73 (128)
388 PRK06526 transposase; Provisio 98.4 3.1E-07 6.6E-12 93.9 6.0 100 427-542 98-201 (254)
389 COG4172 ABC-type uncharacteriz 98.4 2.1E-06 4.5E-11 89.5 11.9 69 424-501 310-379 (534)
390 PRK09183 transposase/IS protei 98.4 1.1E-06 2.4E-11 90.3 10.1 75 151-226 99-177 (259)
391 PRK10982 galactose/methyl gala 98.4 1.1E-06 2.3E-11 99.7 10.8 30 149-178 19-48 (491)
392 PRK10762 D-ribose transporter 98.4 8.1E-07 1.7E-11 100.9 9.7 30 149-178 25-54 (501)
393 PRK08939 primosomal protein Dn 98.4 5E-07 1.1E-11 94.9 7.2 70 426-497 155-228 (306)
394 PRK10938 putative molybdenum t 98.4 3.4E-07 7.4E-12 103.7 6.4 30 149-178 24-53 (490)
395 PRK12377 putative replication 98.4 6.9E-07 1.5E-11 90.7 7.8 70 427-498 101-175 (248)
396 PRK09700 D-allose transporter 98.4 1.1E-06 2.3E-11 100.1 10.2 30 149-178 26-55 (510)
397 PRK09302 circadian clock prote 98.4 7.6E-06 1.7E-10 93.0 16.9 78 423-500 269-377 (509)
398 TIGR03269 met_CoM_red_A2 methy 98.4 1.9E-06 4E-11 98.4 11.8 30 149-178 21-50 (520)
399 PF01695 IstB_IS21: IstB-like 98.4 4E-07 8.7E-12 88.0 5.3 70 426-497 46-119 (178)
400 TIGR00368 Mg chelatase-related 98.4 3.3E-06 7.1E-11 94.3 13.2 47 117-178 189-235 (499)
401 PRK06835 DNA replication prote 98.4 6.8E-07 1.5E-11 94.6 7.4 111 428-555 184-305 (329)
402 KOG0062 ATPase component of AB 98.4 1.8E-05 4E-10 85.1 17.9 28 149-176 101-128 (582)
403 COG0606 Predicted ATPase with 98.4 1E-07 2.3E-12 101.9 1.1 48 389-451 175-222 (490)
404 COG1221 PspF Transcriptional r 98.4 2.4E-06 5.1E-11 91.4 11.0 126 115-265 73-223 (403)
405 KOG0066 eIF2-interacting prote 98.3 5.8E-06 1.3E-10 86.6 13.3 30 422-451 608-637 (807)
406 smart00350 MCM minichromosome 98.3 1.7E-06 3.8E-11 97.7 10.5 131 154-301 236-400 (509)
407 PRK15424 propionate catabolism 98.3 1.4E-06 2.9E-11 98.0 9.5 150 118-295 217-406 (538)
408 COG1484 DnaC DNA replication p 98.3 3.7E-06 8E-11 86.0 11.8 73 153-226 104-180 (254)
409 PF13401 AAA_22: AAA domain; P 98.3 3.2E-06 7E-11 77.3 10.3 98 428-540 5-126 (131)
410 PRK15064 ABC transporter ATP-b 98.3 1.2E-06 2.5E-11 100.3 8.8 30 149-178 22-51 (530)
411 PRK11288 araG L-arabinose tran 98.3 9.2E-07 2E-11 100.4 7.9 30 149-178 25-54 (501)
412 COG3829 RocR Transcriptional r 98.3 9.9E-07 2.1E-11 95.8 7.5 153 117-297 242-426 (560)
413 PF13401 AAA_22: AAA domain; P 98.3 3.4E-06 7.3E-11 77.2 10.1 98 154-263 4-125 (131)
414 TIGR02974 phageshock_pspF psp 98.3 2.1E-06 4.6E-11 91.4 9.9 146 123-296 2-178 (329)
415 COG1116 TauB ABC-type nitrate/ 98.3 2.8E-06 6E-11 84.2 9.9 30 149-178 24-53 (248)
416 PRK11608 pspF phage shock prot 98.3 2.1E-06 4.5E-11 91.6 9.7 149 119-295 5-184 (326)
417 COG1484 DnaC DNA replication p 98.3 1.2E-06 2.7E-11 89.5 7.5 68 426-498 104-179 (254)
418 PF13177 DNA_pol3_delta2: DNA 98.3 6.6E-06 1.4E-10 78.4 12.1 133 124-287 1-160 (162)
419 PF01637 Arch_ATPase: Archaeal 98.3 1E-06 2.2E-11 89.1 6.9 160 427-599 20-228 (234)
420 PRK06921 hypothetical protein; 98.3 3.3E-06 7.1E-11 87.1 10.6 69 153-224 116-188 (266)
421 TIGR02031 BchD-ChlD magnesium 98.3 3.6E-06 7.9E-11 96.4 11.9 134 155-301 17-174 (589)
422 PRK06964 DNA polymerase III su 98.3 5.6E-06 1.2E-10 87.9 12.3 133 152-300 19-203 (342)
423 PRK15134 microcin C ABC transp 98.3 3E-06 6.5E-11 96.9 10.9 31 149-179 30-60 (529)
424 TIGR02633 xylG D-xylose ABC tr 98.3 4.2E-06 9E-11 95.1 11.8 31 149-179 22-52 (500)
425 PRK06871 DNA polymerase III su 98.3 1.8E-05 4E-10 83.4 15.4 127 154-300 24-178 (325)
426 PF01637 Arch_ATPase: Archaeal 98.3 1.1E-05 2.5E-10 81.4 13.6 180 123-322 2-227 (234)
427 PRK06921 hypothetical protein; 98.3 1.1E-06 2.4E-11 90.6 6.1 68 427-497 117-188 (266)
428 PRK12377 putative replication 98.3 2.6E-06 5.7E-11 86.4 8.5 70 154-225 101-175 (248)
429 PTZ00111 DNA replication licen 98.2 3.3E-06 7.2E-11 98.2 10.0 164 394-577 451-657 (915)
430 PRK15429 formate hydrogenlyase 98.2 9.4E-06 2E-10 95.6 13.9 151 117-296 373-555 (686)
431 COG4619 ABC-type uncharacteriz 98.2 7.9E-06 1.7E-10 75.3 10.2 32 148-179 23-54 (223)
432 PRK06835 DNA replication prote 98.2 6.9E-06 1.5E-10 87.0 11.4 104 154-268 183-292 (329)
433 TIGR02329 propionate_PrpR prop 98.2 2.9E-06 6.2E-11 95.5 9.0 97 117-227 209-321 (526)
434 PRK05022 anaerobic nitric oxid 98.2 4.9E-06 1.1E-10 94.3 10.8 150 118-295 185-365 (509)
435 KOG0990 Replication factor C, 98.2 6.6E-06 1.4E-10 83.5 10.4 158 391-583 39-209 (360)
436 PLN03073 ABC transporter F fam 98.2 2.3E-06 5E-11 100.2 8.3 30 148-177 197-226 (718)
437 COG1239 ChlI Mg-chelatase subu 98.2 1.9E-05 4E-10 83.8 14.2 160 116-301 13-232 (423)
438 PF01695 IstB_IS21: IstB-like 98.2 1.6E-06 3.5E-11 83.8 5.9 101 152-265 45-149 (178)
439 COG1120 FepC ABC-type cobalami 98.2 3.5E-06 7.5E-11 85.0 8.1 31 149-179 23-53 (258)
440 PRK07952 DNA replication prote 98.2 3.5E-06 7.6E-11 85.3 8.2 70 155-226 100-175 (244)
441 TIGR02915 PEP_resp_reg putativ 98.2 3.8E-06 8.2E-11 94.1 9.0 172 428-618 163-376 (445)
442 TIGR01817 nifA Nif-specific re 98.2 5.4E-06 1.2E-10 94.8 10.3 63 117-190 193-258 (534)
443 PRK07993 DNA polymerase III su 98.2 3.4E-05 7.3E-10 82.2 15.6 128 153-299 23-178 (334)
444 cd01120 RecA-like_NTPases RecA 98.2 1.7E-05 3.6E-10 75.2 11.9 110 430-543 2-138 (165)
445 COG2204 AtoC Response regulato 98.2 1.3E-05 2.9E-10 87.2 12.4 155 118-296 139-320 (464)
446 PF12775 AAA_7: P-loop contain 98.2 3.8E-06 8.3E-11 86.8 7.8 140 152-302 31-194 (272)
447 PF05729 NACHT: NACHT domain 98.2 1.7E-05 3.7E-10 75.5 11.7 140 156-302 2-164 (166)
448 PF14532 Sigma54_activ_2: Sigm 98.2 1.7E-06 3.6E-11 80.2 4.2 106 427-563 21-137 (138)
449 PRK10820 DNA-binding transcrip 98.1 9.8E-06 2.1E-10 91.9 11.0 153 115-295 199-382 (520)
450 PRK11388 DNA-binding transcrip 98.1 1.6E-05 3.4E-10 93.0 13.0 152 116-295 321-500 (638)
451 PRK08699 DNA polymerase III su 98.1 1.4E-05 3E-10 84.8 11.2 131 153-299 20-183 (325)
452 PF03215 Rad17: Rad17 cell cyc 98.1 4.6E-05 1E-09 85.4 15.9 65 113-185 12-76 (519)
453 COG3842 PotA ABC-type spermidi 98.1 4.6E-06 9.9E-11 88.0 7.4 108 149-266 26-197 (352)
454 PF14532 Sigma54_activ_2: Sigm 98.1 5.5E-06 1.2E-10 76.8 7.1 78 124-226 2-82 (138)
455 COG1126 GlnQ ABC-type polar am 98.1 3.7E-06 7.9E-11 81.1 5.9 29 149-177 23-51 (240)
456 PRK06090 DNA polymerase III su 98.1 6E-05 1.3E-09 79.3 15.5 127 154-299 25-178 (319)
457 PRK10923 glnG nitrogen regulat 98.1 1.1E-05 2.4E-10 91.0 10.7 170 428-616 162-373 (469)
458 PRK08769 DNA polymerase III su 98.1 4.7E-05 1E-09 80.2 14.5 130 154-299 26-183 (319)
459 cd03216 ABC_Carb_Monos_I This 98.1 9.7E-06 2.1E-10 77.4 8.5 77 149-225 21-112 (163)
460 PRK09862 putative ATP-dependen 98.1 1.1E-05 2.4E-10 89.7 9.8 125 151-291 207-391 (506)
461 TIGR02237 recomb_radB DNA repa 98.1 1.7E-05 3.6E-10 79.2 10.3 78 150-227 8-111 (209)
462 PRK08939 primosomal protein Dn 98.1 1.2E-05 2.7E-10 84.4 9.7 71 153-225 155-229 (306)
463 PRK15115 response regulator Gl 98.1 1.2E-05 2.6E-10 90.0 10.2 217 428-666 158-417 (444)
464 COG1118 CysA ABC-type sulfate/ 98.1 3E-06 6.4E-11 85.7 4.6 30 149-178 23-52 (345)
465 smart00763 AAA_PrkA PrkA AAA d 98.1 8.1E-06 1.7E-10 86.2 7.8 81 121-209 52-144 (361)
466 KOG2035 Replication factor C, 98.1 4.9E-05 1.1E-09 75.7 12.6 150 428-605 35-224 (351)
467 TIGR01818 ntrC nitrogen regula 98.1 1.1E-05 2.5E-10 90.7 9.1 171 428-617 158-370 (463)
468 PRK10365 transcriptional regul 98.0 1E-05 2.3E-10 90.4 8.6 167 428-614 163-372 (441)
469 PF09336 Vps4_C: Vps4 C termin 98.0 3.9E-06 8.4E-11 65.3 3.4 36 644-679 27-62 (62)
470 COG3839 MalK ABC-type sugar tr 98.0 1.3E-05 2.8E-10 84.2 8.4 30 149-178 24-53 (338)
471 cd03222 ABC_RNaseL_inhibitor T 98.0 1.6E-05 3.5E-10 76.6 8.4 76 150-225 21-101 (177)
472 COG1125 OpuBA ABC-type proline 98.0 8.7E-06 1.9E-10 80.2 6.4 30 149-178 22-51 (309)
473 PF12775 AAA_7: P-loop contain 98.0 9.1E-06 2E-10 84.1 7.0 136 426-579 32-195 (272)
474 cd01120 RecA-like_NTPases RecA 98.0 2.2E-05 4.7E-10 74.4 9.2 72 157-228 2-100 (165)
475 COG1121 ZnuC ABC-type Mn/Zn tr 98.0 1.4E-05 3.1E-10 80.2 8.1 29 150-178 26-54 (254)
476 KOG2035 Replication factor C, 98.0 0.00016 3.4E-09 72.2 15.0 147 155-322 35-221 (351)
477 PF05729 NACHT: NACHT domain 98.0 6.4E-05 1.4E-09 71.5 12.3 141 429-579 2-165 (166)
478 KOG1968 Replication factor C, 98.0 7.7E-06 1.7E-10 95.9 6.7 164 430-614 360-536 (871)
479 COG0606 Predicted ATPase with 98.0 3.2E-06 7E-11 90.7 3.3 49 116-179 175-223 (490)
480 PRK05917 DNA polymerase III su 98.0 2.4E-05 5.3E-10 80.6 9.6 121 425-564 17-154 (290)
481 PF00910 RNA_helicase: RNA hel 98.0 1.2E-05 2.5E-10 71.0 6.2 94 430-541 1-107 (107)
482 PRK11361 acetoacetate metaboli 98.0 3.1E-05 6.8E-10 87.0 11.3 168 428-615 167-377 (457)
483 PF12774 AAA_6: Hydrolytic ATP 98.0 0.00011 2.4E-09 73.9 13.8 127 154-297 32-176 (231)
484 PRK06851 hypothetical protein; 98.0 0.00019 4.2E-09 76.6 16.2 33 428-460 215-250 (367)
485 COG1136 SalX ABC-type antimicr 98.0 3.5E-05 7.7E-10 76.2 9.9 30 149-178 26-55 (226)
486 PRK13406 bchD magnesium chelat 98.0 4.5E-05 9.7E-10 86.8 12.1 122 428-568 26-173 (584)
487 KOG1970 Checkpoint RAD17-RFC c 98.0 0.00014 2.9E-09 79.1 14.6 174 429-615 112-321 (634)
488 COG1126 GlnQ ABC-type polar am 98.0 4.7E-06 1E-10 80.3 3.2 45 417-461 16-64 (240)
489 cd03214 ABC_Iron-Siderophores_ 98.0 1.4E-05 3.1E-10 77.6 6.7 31 149-179 20-50 (180)
490 KOG1942 DNA helicase, TBP-inte 97.9 0.00018 3.9E-09 72.0 14.0 28 152-179 62-89 (456)
491 COG2884 FtsE Predicted ATPase 97.9 4.5E-05 9.7E-10 72.1 9.1 30 149-178 23-52 (223)
492 COG1373 Predicted ATPase (AAA+ 97.9 0.00035 7.5E-09 76.5 17.5 140 423-583 34-186 (398)
493 COG1124 DppF ABC-type dipeptid 97.9 3.7E-05 8E-10 75.7 8.8 30 149-178 28-57 (252)
494 KOG1514 Origin recognition com 97.9 0.00035 7.7E-09 78.1 17.2 154 155-320 423-608 (767)
495 TIGR02012 tigrfam_recA protein 97.9 7.9E-05 1.7E-09 78.2 11.6 115 150-264 51-190 (321)
496 COG1618 Predicted nucleotide k 97.9 0.00017 3.7E-09 66.4 12.1 27 153-179 4-30 (179)
497 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 2.6E-05 5.6E-10 72.8 7.0 75 149-225 21-100 (144)
498 cd03228 ABCC_MRP_Like The MRP 97.9 3.2E-05 6.8E-10 74.5 7.8 109 149-269 23-158 (171)
499 KOG1051 Chaperone HSP104 and r 97.9 6.7E-05 1.4E-09 87.5 11.6 128 120-266 562-711 (898)
500 TIGR02012 tigrfam_recA protein 97.9 4.8E-05 1E-09 79.8 9.4 122 423-544 51-194 (321)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-114 Score=912.19 Aligned_cols=555 Identities=49% Similarity=0.855 Sum_probs=509.7
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhc
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 194 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~ 194 (719)
.+++|.||||+++.+.+|.+++.. ++||+.|..+|+.|++|||||||||||||+||+++|++++.+|+.|+++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 467999999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCC----CcEEEEEecCCCCCCC
Q 005014 195 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPNSID 270 (719)
Q Consensus 195 ~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~----~~vivI~atn~~~~ld 270 (719)
.|+++++++.+|+.|....|||+||||||++.++++..+.++++|++.||++.||++... ..|+||||||+|+.+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999998654 5799999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccc--
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL-- 348 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~-- 348 (719)
|+|||.|||+++|.+..|++.+|.+||+..++++.+..+.++.++|+.|+||+|+||.+||.+|+..++++..+...-
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887652220
Q ss_pred -----ccc---------h--h---------------------------hHhHhhccccchHHHHHhhccCCCCcccceee
Q 005014 349 -----EDE---------T--I---------------------------DAEILNSMAVTDEHFKTALGTSNPSALRETVV 385 (719)
Q Consensus 349 -----~~~---------~--~---------------------------~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~ 385 (719)
.+. . + ..+..+.+.+..+||..|+..++|++.|+.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 000 0 0 01223345688999999999999999999999
Q ss_pred ccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 386 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
.+|+++|+|||++++++.+|...|.||+++++.|+.+|+..|.|+||+||||||||+||||+|++.+.+|++|+|++|++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 005014 466 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 545 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l 545 (719)
+|||+||+.||.+|++||.++||||||||+|+|+++|+... ..++.|++||||+||||+..+.+|+||+|||||+.|
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999998753 567899999999999999999999999999999999
Q ss_pred CcccCCCCCcceEEEeCCCCHHHHHHHHHHHhc--cCCCCCccCHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 005014 546 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLR--KSPVSKDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIEK 621 (719)
Q Consensus 546 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~--~~~~~~~~d~~~la~~~~--~~sg~di~~~~~~A~~~a~~~~~~~ 621 (719)
|||+|||||||+.+|+++|+.++|..||+...+ +.+++.|+|+++||+.+. |||||||..+|++|.+.|+++.+..
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 788999999999999886 9999999999999999999998752
Q ss_pred HHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcc
Q 005014 622 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSR 682 (719)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~~~ 682 (719)
.. .+.....- ......+++.||++|++.++||+++.+-+.|+...+.++-+.
T Consensus 741 ~~-------~~~~~~~~--~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~~ 792 (802)
T KOG0733|consen 741 ID-------SSEDDVTV--RSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLST 792 (802)
T ss_pred cc-------ccCcccce--eeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcccc
Confidence 21 00000000 001235889999999999999999999999999998876443
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-114 Score=924.87 Aligned_cols=619 Identities=62% Similarity=1.045 Sum_probs=583.5
Q ss_pred CHHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccCCcccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEEE
Q 005014 2 NKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFK 81 (719)
Q Consensus 2 ~~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~ 81 (719)
+...|.++.++.|+.|.+.+++.+..+..+.+.|+.++..++....++.+.+.|+....+++..|+++ .......|+
T Consensus 73 ~~~~r~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 149 (693)
T KOG0730|consen 73 TMVSRSNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFK 149 (693)
T ss_pred hheeccchhhcccceecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhh
Confidence 45678899999999999999888888889999999998888988899999999999888999999988 334456788
Q ss_pred EEEecCCceEEECCCceEEecCCCccccccccCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEEC
Q 005014 82 VIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYG 161 (719)
Q Consensus 82 v~~~~p~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~G 161 (719)
++...|.. +++++|.+.+.+++....... +..++ .++||+..++..+++++.+|+++|..+.++|+.++.++|+||
T Consensus 150 ~~~~~~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~g 225 (693)
T KOG0730|consen 150 VLELDPSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYG 225 (693)
T ss_pred ccccccch--hcCccchhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccC
Confidence 88887766 778888888888877654444 46777 899999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcC-CcEEEEccccccCCCCCCCchHHHHHH
Q 005014 162 PPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRI 240 (719)
Q Consensus 162 ppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~iL~iDEid~l~~~~~~~~~~~~~~v 240 (719)
|||||||.+++++|++.++.++.+++++++.++.|++++.++.+|+.+...+ |+++||||+|.+++++....+ .++|+
T Consensus 226 ppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv 304 (693)
T KOG0730|consen 226 PPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRV 304 (693)
T ss_pred CCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHH
Confidence 9999999999999999999999999999999999999999999999999998 999999999999999876666 78999
Q ss_pred HHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhC
Q 005014 241 VSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTH 320 (719)
Q Consensus 241 ~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~ 320 (719)
+.||+++|++.....+++|+++||+|+.||+++|| |||++++++..|+..+|.+|++.+++++++.++.++..++..+|
T Consensus 305 ~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~th 383 (693)
T KOG0730|consen 305 VSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTH 383 (693)
T ss_pred HHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHcc
Confidence 99999999999999999999999999999999999 99999999999999999999999999999988899999999999
Q ss_pred CCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccCCCccccccccHH
Q 005014 321 GYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLEN 400 (719)
Q Consensus 321 g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~ 400 (719)
||+|+|+..+|.+|++.+.++ +.++|..|+..++|+++++...+.|+++|+||||+++
T Consensus 384 GyvGaDL~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~ 441 (693)
T KOG0730|consen 384 GYVGADLAALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEE 441 (693)
T ss_pred chhHHHHHHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHH
Confidence 999999999999999988765 4678899999999999999999999999999999999
Q ss_pred HHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHH
Q 005014 401 VKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFD 480 (719)
Q Consensus 401 ~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~ 480 (719)
+|+.|++.+.||+++++.|.++|+++++|+|||||||||||++||++|++++.+|++|++++++++|+|+||+.++++|+
T Consensus 442 lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~ 521 (693)
T KOG0730|consen 442 LKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFR 521 (693)
T ss_pred HHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEE
Q 005014 481 KARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 560 (719)
Q Consensus 481 ~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~ 560 (719)
+||+.+|||+||||||+++..|+++. +++.+|++++||+||||+...++|+||+|||||+.||+|++||||||++||
T Consensus 522 kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiy 598 (693)
T KOG0730|consen 522 KARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIY 598 (693)
T ss_pred HHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEe
Confidence 99999999999999999999998432 388999999999999999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccc
Q 005014 561 IPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDV 640 (719)
Q Consensus 561 ~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (719)
||+||.+.|.+||+.+++++++..++|++.||+.|+|||||||.++|++|++.|+++.++
T Consensus 599 VplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------------------- 658 (693)
T KOG0730|consen 599 VPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------------------- 658 (693)
T ss_pred ecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------------------
Confidence 999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005014 641 EDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQT 677 (719)
Q Consensus 641 ~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~ 677 (719)
...|+.+||++|++..++|++..++++|++|.++
T Consensus 659 ---a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 659 ---ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ---cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 3479999999999999999999999999999864
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7e-94 Score=838.83 Aligned_cols=665 Identities=53% Similarity=0.892 Sum_probs=589.6
Q ss_pred CCHHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccCCcccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEE
Q 005014 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEF 80 (719)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f 80 (719)
||+.+|+|+|+++||.|+|+++ .++.|+.|.+.|..... .+..+..+++.++. .+++..|+.+.+......+.|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~ 138 (733)
T TIGR01243 65 MDGYLRANAGVTIGDTVTVERA-EVKEAKKVVLAPTQPIR---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPF 138 (733)
T ss_pred ecHHHHhhcCCCCCCeEEEeec-CCCccceEeeccccccc---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeE
Confidence 6889999999999999999995 57889999999864321 22345567888885 378999999887644445789
Q ss_pred EEEEecCCceEEECCCceEEecCCCccccccccCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEE
Q 005014 81 KVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLY 160 (719)
Q Consensus 81 ~v~~~~p~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~ 160 (719)
+|+++.|.+++.++..|.+.+...+.........++++|+||+|+++++++|++++.+|+.+|++++.+|+.+++++||+
T Consensus 139 ~v~~~~p~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~ 218 (733)
T TIGR01243 139 VVVSTQPAGFVYVTEATEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLY 218 (733)
T ss_pred EEEecCCCCcEEECCCceEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEE
Confidence 99999999999999999887765554322222457889999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHH
Q 005014 161 GPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI 240 (719)
Q Consensus 161 GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v 240 (719)
||||||||++++++|++++.+++.+++.++.+++.|+.+..++.+|+.+....|++|||||+|.++++++...++.++++
T Consensus 219 GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~ 298 (733)
T TIGR01243 219 GPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRV 298 (733)
T ss_pred CCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877777788899
Q ss_pred HHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhC
Q 005014 241 VSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTH 320 (719)
Q Consensus 241 ~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~ 320 (719)
+.+|+.+|+++..+..++||++||.++.+|+++++++||+..+.++.|+.++|.+||+.+.+.+.+..+.++..++..++
T Consensus 299 ~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~ 378 (733)
T TIGR01243 299 VAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTH 378 (733)
T ss_pred HHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCC
Confidence 99999999999888899999999999999999999999999999999999999999999999988888889999999999
Q ss_pred CCccccHHHHHHHHHHHHHHhhcc--ccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccCCCcccccccc
Q 005014 321 GYVGADLAALCTEAALQCIREKMD--VIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGL 398 (719)
Q Consensus 321 g~~~~dl~~l~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~ 398 (719)
||+++|+..++.++++.++++... ........+.........++.++|..++..+.|+..++...+.|.++|++++|+
T Consensus 379 G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~ 458 (733)
T TIGR01243 379 GFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGL 458 (733)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccH
Confidence 999999999999999998887544 222222334444445567889999999999999999888888999999999999
Q ss_pred HHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHH
Q 005014 399 ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREI 478 (719)
Q Consensus 399 ~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~ 478 (719)
+.+|+.|.+.+.||+.+++.+.++++.+++|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++++.+
T Consensus 459 ~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~ 538 (733)
T TIGR01243 459 EEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREI 538 (733)
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceE
Q 005014 479 FDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQL 558 (719)
Q Consensus 479 f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~ 558 (719)
|+.|+...||||||||||++++.|+.. ...+..++++++||++||++....+++||+|||+|+.||||++||||||++
T Consensus 539 f~~A~~~~p~iifiDEid~l~~~r~~~--~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~ 616 (733)
T TIGR01243 539 FRKARQAAPAIIFFDEIDAIAPARGAR--FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRL 616 (733)
T ss_pred HHHHHhcCCEEEEEEChhhhhccCCCC--CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceE
Confidence 999999999999999999999988653 224467899999999999998888999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccc
Q 005014 559 IYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEE 638 (719)
Q Consensus 559 i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 638 (719)
|+||+|+.++|.+||+.++++.++..++|++.+|+.|+||||+||.++|++|++.|+++.+........ . ....
T Consensus 617 i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~----~--~~~~ 690 (733)
T TIGR01243 617 ILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKL----E--VGEE 690 (733)
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhh----h--cccc
Confidence 999999999999999999999999999999999999999999999999999999999987653210000 0 0000
Q ss_pred ccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 005014 639 DVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQ 680 (719)
Q Consensus 639 ~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~ 680 (719)
...+...|+++||.+|+++++||+++++++.|++|.++|+.
T Consensus 691 -~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 691 -EFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred -cccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 00123479999999999999999999999999999999963
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-89 Score=735.87 Aligned_cols=615 Identities=36% Similarity=0.595 Sum_probs=499.1
Q ss_pred hhhHHHHHhHHhhhcCccccCCCEEEEec------------------CceeEEEEEEEecCC---ceEEECCCceEEecC
Q 005014 45 GNLFDAYLKPYFTEAYRPVRKGDLFLVRG------------------GMRSVEFKVIETDPP---EYCVVAPDTEIFCEG 103 (719)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~------------------~~~~~~f~v~~~~p~---~~~~~~~~t~~~~~~ 103 (719)
.+..+..++.||. +.|.++.||+|++.. .-..++|+|++.+|. .+++.+++|.++..+
T Consensus 303 ~~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~ 381 (953)
T KOG0736|consen 303 AGNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVG 381 (953)
T ss_pred hhHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEcc
Confidence 4567788999997 779999999998732 124679999999986 456677788887765
Q ss_pred CCccccc-cc-c-CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Q 005014 104 EPVRRED-EN-R-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA 180 (719)
Q Consensus 104 ~~~~~~~-~~-~-~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~ 180 (719)
....+.. .. . ..-.++-..-+.+..+..+..++.-+ ..|. ..++.-...+||+|+||||||++++++|.++|.
T Consensus 382 ~~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p~-~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~ 457 (953)
T KOG0736|consen 382 ATSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSPQ-KQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGL 457 (953)
T ss_pred ccccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCcc-cCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCC
Confidence 4433200 00 0 00112223344454444444444322 2221 122334457999999999999999999999999
Q ss_pred eEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhh---cccCCCcE
Q 005014 181 FFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD---GLKSRAHV 257 (719)
Q Consensus 181 ~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~---~~~~~~~v 257 (719)
+++.++|.++.....+..+.++..+|+.++...|+|||+-++|.+.-+.++ ....++...+..++. ....+.++
T Consensus 458 h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~ 534 (953)
T KOG0736|consen 458 HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPV 534 (953)
T ss_pred ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCce
Confidence 999999999999999999999999999999999999999999999865543 233555555554444 33467799
Q ss_pred EEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHH
Q 005014 258 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQ 337 (719)
Q Consensus 258 ivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~ 337 (719)
+||++++..+.+++.+++ .|.++|.++.|++++|.+||+.+.....+..++.+..++.++.||+.+++..++......
T Consensus 535 ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~ 612 (953)
T KOG0736|consen 535 IVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLA 612 (953)
T ss_pred EEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHH
Confidence 999999999999999998 788899999999999999999999999999999999999999999999999998876443
Q ss_pred HHHhhcccc---ccccchhhHhHhhccccchHHHHHhhccCCCCcccc-eeeccCCCccccccccHHHHHHhhhccccCC
Q 005014 338 CIREKMDVI---DLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRE-TVVEVPNVNWEDIGGLENVKRELQETVQYPV 413 (719)
Q Consensus 338 ~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~-~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~ 413 (719)
+..+..... ......-.........++++||.+++...+...... ....+|+++|+||||++++|..+.+.+..|+
T Consensus 613 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL 692 (953)
T KOG0736|consen 613 AKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPL 692 (953)
T ss_pred HHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcc
Confidence 332221110 000000011122346788999999998665332222 2346899999999999999999999999999
Q ss_pred CChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEe
Q 005014 414 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFD 493 (719)
Q Consensus 414 ~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iD 493 (719)
+|+++|.. |+++..|+|||||||||||.+|||+|.++..+|++|+|+||+++|+|+||+|+|++|++||..+|||||||
T Consensus 693 ~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFD 771 (953)
T KOG0736|consen 693 KHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFD 771 (953)
T ss_pred cChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEec
Confidence 99999987 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC--CCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCC-CHHHHH
Q 005014 494 ELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP-DEESRL 570 (719)
Q Consensus 494 Eid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p-~~~~r~ 570 (719)
|+|+++++||.+ ++++++.+||++|||.||||+. +.+.|+|||||||||.|||||+||||||+.+|++++ |.+.+.
T Consensus 772 ELDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 772 ELDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred cccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 999999999987 7889999999999999999998 467899999999999999999999999999999988 678899
Q ss_pred HHHHHHhccCCCCCccCHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccH
Q 005014 571 QIFKACLRKSPVSKDVDLRALAKYT-QGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKA 649 (719)
Q Consensus 571 ~Il~~~~~~~~~~~~~d~~~la~~~-~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 649 (719)
.||+...+++.++.++|+.++|+.+ ..|||||+..+|.+|.+.|++|.+........ ..++.+.....|++
T Consensus 851 ~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~--------~~~e~~~~~v~V~~ 922 (953)
T KOG0736|consen 851 RVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTI--------SEEEQESSSVRVTM 922 (953)
T ss_pred HHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccc--------cccccCCceEEEEH
Confidence 9999999999999999999999997 57999999999999999999998764421100 00122233457999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 005014 650 VHFEESMKYARRSVSDADIRKYQAFAQTLQ 679 (719)
Q Consensus 650 ~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~ 679 (719)
+||.+++++..||+|.+++.+|+..+.+|.
T Consensus 923 eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 923 EDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999884
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-74 Score=613.84 Aligned_cols=499 Identities=37% Similarity=0.572 Sum_probs=425.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC----CeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCC
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~----~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~ 227 (719)
..+.+|||+||+|||||.|+++++.+.. +++..++|+.+...........++.+|..+....|+|+++|++|.++.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3456799999999999999999999864 567889999988776667778899999999999999999999999987
Q ss_pred CCCC---CchHHHHHHHHHHHHHhhcccC-CCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC
Q 005014 228 KREK---THGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 303 (719)
Q Consensus 228 ~~~~---~~~~~~~~v~~~L~~~l~~~~~-~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~ 303 (719)
..+. ..+...+++...+.+.+..+.. +..+.+|++.+....++|.|-++++|...+.++.|+..+|.+||...+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 3322 2233445555555455554443 44578999999999999999999999999999999999999999987765
Q ss_pred CCC-CCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccc
Q 005014 304 MKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRE 382 (719)
Q Consensus 304 ~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~ 382 (719)
... ....+++.++..|+||...|+..++.+|...++...... ....++.++|.++++.+.|.+++.
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~ 655 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRG 655 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhh
Confidence 432 122356669999999999999999999988776433211 122588999999999999999998
Q ss_pred eeeccC-CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEecc
Q 005014 383 TVVEVP-NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 461 (719)
Q Consensus 383 ~~~~~~-~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~ 461 (719)
.....+ .++|+|+||+.++|+.|.+.++||.++|.+|.+.+++.+.|+|||||||||||+||.++|..++.+||+|+|+
T Consensus 656 ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGP 735 (952)
T KOG0735|consen 656 IKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGP 735 (952)
T ss_pred ccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCH
Confidence 655444 4999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 005014 462 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 541 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~ 541 (719)
+++++|+|.||+++|.+|.+|+...|||+||||+|+++++||. +..|+++|++||||++|||.++.++|+|++||.|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh---DsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH---DSTGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC---CCCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 9999999999999999999999999999999999999999985 5578999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005014 542 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 621 (719)
Q Consensus 542 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~ 621 (719)
|+.|||||+||||+|+.+++|+|+..+|.+|++.......++.++|++.+|..|+|||||||..+|..|.+.|+++.+.+
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHhhhcCCCcccccccccccccccHHHHHHH--HhhcCCCCCHHHHHHHHHHHHHHhhcc
Q 005014 622 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEES--MKYARRSVSDADIRKYQAFAQTLQQSR 682 (719)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a--~~~~~~sv~~~~~~~~~~~~~~~~~~~ 682 (719)
... ++-.+.++...+... ....+||.+.-+-+.+.+.+.+|..++
T Consensus 893 ~~~----------------~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 939 (952)
T KOG0735|consen 893 EDE----------------EGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE 939 (952)
T ss_pred cCc----------------cccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence 321 111222333333332 246788888888888887777776654
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-67 Score=589.70 Aligned_cols=489 Identities=57% Similarity=0.925 Sum_probs=450.7
Q ss_pred cccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEE
Q 005014 138 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSII 217 (719)
Q Consensus 138 ~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL 217 (719)
+|+.+++.++.+++.++.+++++||||+|||+++++++.. +..+..++++++..++.+..+..++.+|+.+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678899999999999999999999999999999999999 666688899999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHH
Q 005014 218 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 297 (719)
Q Consensus 218 ~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il 297 (719)
++||++.+.+.+.........+++.+++..++++. +..+++++.++.+..+++++++++||+.++.+..|+...+.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999998877666788899999999999998 55588889999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCC
Q 005014 298 RIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNP 377 (719)
Q Consensus 298 ~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p 377 (719)
..+...+....+.++..++..++||+++++..++.++.....++... .......++.+++..++..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~-----------~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID-----------LVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc-----------cCcccccccHHHHHHHHHhcCc
Confidence 99999888888889999999999999999999999998877766420 0122355788999999999888
Q ss_pred CcccceeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 378 SALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 378 s~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
+ +......+.+.|++++|++.+|+.+.+.+.+++.+++.+.+.++.+++|+|||||||||||+||+++|.+++.+|+.
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 7 66777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 458 VKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 458 v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
+++++++++|+|+++++++.+|..|+...||||||||+|++++.|+.+. ++...|++++||++||++....+|+||+
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 9999999999999999999999999999999999999999999997642 2334799999999999999999999999
Q ss_pred ecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCC--CCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 005014 538 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP--VSKDVDLRALAKYTQGFSGADITEICQRACKYAI 615 (719)
Q Consensus 538 atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~--~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~ 615 (719)
|||+|+.+|||++||||||++++||+||.++|.+||+.+++... +..++|+..+++.++||||+||..+|++|++.++
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998543 4689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005014 616 RENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAF 674 (719)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~ 674 (719)
++.. ...++.+||..|++.++||++ |++|
T Consensus 464 ~~~~------------------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 464 REAR------------------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHhc------------------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 8863 237999999999999999999 8887
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-61 Score=480.52 Aligned_cols=253 Identities=48% Similarity=0.817 Sum_probs=243.3
Q ss_pred eeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccch
Q 005014 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463 (719)
Q Consensus 384 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l 463 (719)
..+.|+++|++|||+++..++|++.++.|+++|++|..+|+.||+|+|||||||||||+||||+|++.+++|+.|.+|+|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 005014 464 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 543 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~ 543 (719)
+.+|+|+..+.+|++|+.|+..+||||||||||+++.+|..+..+.+....|.+-+||++|||+...++|=||+||||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999988766667778899999999999999999999999999999
Q ss_pred CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 544 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 623 (719)
Q Consensus 544 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~ 623 (719)
.||||||||||||+.|+||+||.+.|.+||+.+.+++.+..++|++.||+.++|+|||||+++|.+|++.|+++.
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHhhhcCCCcccccccccccccccHHHHHHHHhhcCC
Q 005014 624 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 661 (719)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~ 661 (719)
...|+++||.+|..++-.
T Consensus 377 --------------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 --------------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred --------------------cCeecHHHHHHHHHHHHh
Confidence 348999999999988743
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-56 Score=451.14 Aligned_cols=285 Identities=43% Similarity=0.697 Sum_probs=258.3
Q ss_pred eeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccc
Q 005014 383 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 462 (719)
Q Consensus 383 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~ 462 (719)
.....|+++|+||.|+.++|+.|++.+..|+..|+.|+. .++|.+|+|++||||||||+||||+|.+|+..|+.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 344568999999999999999999999999999999987 5778899999999999999999999999999999999999
Q ss_pred hhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCC----CcEEEEEe
Q 005014 463 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK----KTVFIIGA 538 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~----~~v~vi~a 538 (719)
+.+||-|+||+.||-+|+.||..+|++|||||||+|+.+||.+ +...+++|+.++||.+|||+... +.|+|++|
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 9999999999999999999999999999999999999999876 45678999999999999998642 34999999
Q ss_pred cCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q 005014 539 TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 618 (719)
Q Consensus 539 tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~ 618 (719)
||.||.||+||+| ||.++||+|+|+.++|..+++..++...++.+++++.|++.++||||+||.++|++|.++++++.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 005014 619 IEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQ 680 (719)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~ 680 (719)
+........+.. .. ++...+|+++||+.|+++++||++..++.+|++|...|+.
T Consensus 437 i~g~~~~ei~~l------ak--E~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 437 IAGLTPREIRQL------AK--EEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HhcCCcHHhhhh------hh--hccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 764322211111 00 1112479999999999999999999999999999999975
No 9
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-53 Score=440.79 Aligned_cols=552 Identities=31% Similarity=0.470 Sum_probs=405.3
Q ss_pred CHHHHhhcCCCCCCeEEEEEccCC---CCCcEEEEc----ccC-CcccCcchhhHHHHHhHHhhhcCccccCCCEEEEec
Q 005014 2 NKVVRSNLRVRLGDVVSVHQCADV---KYGKRVHIL----PVD-DTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRG 73 (719)
Q Consensus 2 ~~~~~~~~~~~~~~~v~i~~~~~~---~~a~~v~~~----~~~-~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~ 73 (719)
+..+|+-+++++|+.|.|.++... ++...+.+. .-. .+...++.+.........|. ..++++|+.+.+.-
T Consensus 65 s~~qR~wa~~Sl~qev~V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~--~q~fsvgQ~~~f~f 142 (744)
T KOG0741|consen 65 SLPQRKWAGWSLGQEVEVKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN--SQAFSVGQQLVFEF 142 (744)
T ss_pred chhhhhhhhcccCceeEEEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc--CcccCCccEEEEEe
Confidence 567899999999999999986421 222222221 111 01111232222222333332 35688898776543
Q ss_pred C-ceeEEEEEEEec---C--------------CceEEECCCceEEecCCCc---c-------ccccc--cCCCCcccc--
Q 005014 74 G-MRSVEFKVIETD---P--------------PEYCVVAPDTEIFCEGEPV---R-------REDEN--RLDEVGYDD-- 121 (719)
Q Consensus 74 ~-~~~~~f~v~~~~---p--------------~~~~~~~~~t~~~~~~~~~---~-------~~~~~--~~~~~~~~~-- 121 (719)
+ ...+.++|.+++ | ..++.+..+|.+.+..... . +.... --+++.|++
T Consensus 143 ~~~~~l~l~v~~ie~~D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mG 222 (744)
T KOG0741|consen 143 NGNKLLGLKVKDIEAFDPGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMG 222 (744)
T ss_pred cCceEeeeEEEEEeeeccccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcc
Confidence 2 244567777654 3 1357788888874432211 0 01111 124566765
Q ss_pred ccchHHHHHHH-HHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-EEEEechhhhhhcccchH
Q 005014 122 VGGVRKQMAQI-RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-FFCINGPEIMSKLAGESE 199 (719)
Q Consensus 122 i~G~~~~~~~l-~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~-~i~v~~~~l~~~~~g~~~ 199 (719)
|||++.+...| |+.+......|++.+++|+..-+|+|||||||||||.+||.|...+++. ...|||+++.++|+|+++
T Consensus 223 IGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE 302 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESE 302 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccH
Confidence 89999999887 7777777888999999999999999999999999999999999999853 577999999999999999
Q ss_pred HHHHHHHHHHHhc--------CCcEEEEccccccCCCCCCCch--HHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 200 SNLRKAFEEAEKN--------APSIIFIDEIDSIAPKREKTHG--EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 200 ~~l~~vf~~a~~~--------~p~iL~iDEid~l~~~~~~~~~--~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
+++|.+|.+|+.. .-.||++||||++|.++++..+ .+...+++||++.||+..+-.+++|||.||+.+.+
T Consensus 303 ~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlI 382 (744)
T KOG0741|consen 303 ENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLI 382 (744)
T ss_pred HHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhH
Confidence 9999999998763 2369999999999999876543 56788999999999999999999999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCC----CCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDV 345 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~ 345 (719)
|.||.|||||..++++..||+..|.+||+.|+++|. +..++|+.++|..|..|+|++|..+++.|...++.+....
T Consensus 383 DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 383 DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKA 462 (744)
T ss_pred HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999998774 5688999999999999999999999999998888887653
Q ss_pred cccccchhhHhHhhccccchHHHHHhhccCCCCcccce-----eeccCCCccccccccHHHHHHhhhccccCCCChhhhh
Q 005014 346 IDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRET-----VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFE 420 (719)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~-----~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~ 420 (719)
- . ....+......+.++..||..||..++|...... ....--+.|..- +.+.+.+ .....+..+
T Consensus 463 ~-~-~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~-----v~~il~~----G~llv~qvk 531 (744)
T KOG0741|consen 463 G-G-KVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPP-----VTRILDD----GKLLVQQVK 531 (744)
T ss_pred C-c-ceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeeccc-----HHHHHhh----HHHHHHHhh
Confidence 2 1 1233344556788999999999999888643210 001111233221 1111110 001111223
Q ss_pred hhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCch----hhHHHHHHHHHhCCCEEEEEeccc
Q 005014 421 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELD 496 (719)
Q Consensus 421 ~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se----~~i~~~f~~a~~~~p~il~iDEid 496 (719)
....++-.++||.||||+|||+||..+|..++.||+.+-.++- .+|-+| ..++.+|+.|++++-+||++|+|+
T Consensus 532 ~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~---miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiE 608 (744)
T KOG0741|consen 532 NSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED---MIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIE 608 (744)
T ss_pred ccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH---ccCccHHHHHHHHHHHHHHhhcCcceEEEEcchh
Confidence 3344555679999999999999999999999999999866653 345454 368999999999999999999999
Q ss_pred hhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCC-CcEEEEEecCCCCCCCc-ccCCCCCcceEEEeCCCCH-HHHHHHH
Q 005014 497 SIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK-KTVFIIGATNRPDIIDP-ALLRPGRLDQLIYIPLPDE-ESRLQIF 573 (719)
Q Consensus 497 ~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~v~vi~atn~~~~ld~-allrpgRf~~~i~~~~p~~-~~r~~Il 573 (719)
.|...-. -....++-+++.|+..+...... .+.+|++||.+.+.|.. .++. .|+..+++|..+. ++..+++
T Consensus 609 rLiD~vp----IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl 682 (744)
T KOG0741|consen 609 RLLDYVP----IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVL 682 (744)
T ss_pred hhhcccc----cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHH
Confidence 9875431 12345677888888888877654 47889999998776654 5555 8999999997654 6666665
Q ss_pred HH
Q 005014 574 KA 575 (719)
Q Consensus 574 ~~ 575 (719)
..
T Consensus 683 ~~ 684 (744)
T KOG0741|consen 683 EE 684 (744)
T ss_pred HH
Confidence 43
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-50 Score=405.84 Aligned_cols=246 Identities=52% Similarity=0.857 Sum_probs=230.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|+||||+++|+++|++.+++|+.+|++|+.+|+.||+|||||||||||||.||+++|++.++.|+.+.++++.+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
+|.|+....++.+|+.|+.+.||||||||||+++.++-.. .+..-+|.+-+|++.||++..+.+|-||+|||+++.+
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~L 303 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDIL 303 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcccc
Confidence 9999999999999999999999999999999999877433 2223356677889999999999999999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
||||.|+|||++.|+||.|+.+.|.+||+.|+++|.+..+++++.+++.++|++|+|+.++|.+|++.+++...
T Consensus 304 DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R------ 377 (406)
T COG1222 304 DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR------ 377 (406)
T ss_pred ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred cchhhHhHhhccccchHHHHHhhccC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
..++++||..|..++
T Consensus 378 -----------~~Vt~~DF~~Av~KV 392 (406)
T COG1222 378 -----------DEVTMEDFLKAVEKV 392 (406)
T ss_pred -----------CeecHHHHHHHHHHH
Confidence 347899999988765
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-51 Score=401.17 Aligned_cols=293 Identities=34% Similarity=0.640 Sum_probs=259.3
Q ss_pred eeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccc
Q 005014 383 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 462 (719)
Q Consensus 383 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~ 462 (719)
.+.+.|+++|+|+.|++..|+.|++.+..|++.|++|.. +..|.+|+||||||||||+.||+|+|.+.+..|++|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 466789999999999999999999999999999999987 7788999999999999999999999999999999999999
Q ss_pred hhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-CCCcEEEEEecCC
Q 005014 463 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 541 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~atn~ 541 (719)
|+++|.|+||+.++.+|+.||.+.|+||||||||++++.|+.. .+.+.+|+..+||.+|.|+. +.++|+|++|||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999988754 35678999999999999985 4568999999999
Q ss_pred CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCC-CCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q 005014 542 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 620 (719)
Q Consensus 542 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~-~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~ 620 (719)
||.||.|+.| ||+++||+|+|+..+|..+|+.++...+. -.+.|+..|+++|+||||+||.-+++.|.+..+++...
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 99999999999999999999999988763 35789999999999999999999999999999998766
Q ss_pred HHHHHHhhhcCCCcc-----cccc--------------ccc--ccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 005014 621 KDIERERRRSENPEA-----MEED--------------VED--EVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 679 (719)
Q Consensus 621 ~~~~~~~~~~~~~~~-----~~~~--------------~~~--~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~ 679 (719)
+..........+... +... ..+ -.+.|++.||..++..++|.|++.++.+.++|.+.|+
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 655433222111100 0000 011 2578999999999999999999999999999999998
Q ss_pred hc
Q 005014 680 QS 681 (719)
Q Consensus 680 ~~ 681 (719)
|.
T Consensus 437 qE 438 (439)
T KOG0739|consen 437 QE 438 (439)
T ss_pred cC
Confidence 75
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-50 Score=382.38 Aligned_cols=249 Identities=44% Similarity=0.747 Sum_probs=239.2
Q ss_pred ccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 386 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
+.|++++.|+||++-.|+++++.++.|+.+.++++.+|+.||+|+|+|||||||||+|+|++|+...+.||.|.++++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 005014 466 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 545 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l 545 (719)
+|.|+..+.+|.+|..|+.++|+||||||||+++.+|-....+.+....|++-+||++|||+....+|-||+|||+.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999997766666777889999999999999999999999999999999
Q ss_pred CcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 546 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 625 (719)
Q Consensus 546 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~ 625 (719)
||||+||||+|+.|+||+||..+++-+|.....++.+..++|++.+....+..||+||..+|++|.+.|.+++
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HhhhcCCCcccccccccccccccHHHHHHHHhhc
Q 005014 626 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 659 (719)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~ 659 (719)
...|...||++|++..
T Consensus 381 ------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ------------------ceeeeHHHHHHHHHhh
Confidence 3478999999999864
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-49 Score=374.69 Aligned_cols=257 Identities=42% Similarity=0.741 Sum_probs=242.0
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
..+|+..++-+||++...+.+++.++.|.+||++|+.+|+..|+|+|||||||||||.||+++|+...+.||.|+++++.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 544 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ 544 (719)
.+|+|+..+.+|++|-.||..+|+|||.||||++...|..++++.+....|.+-+||+++||++..+++-||+||||.+.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999999999877666666788999999999999999999999999999999
Q ss_pred CCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 545 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 624 (719)
Q Consensus 545 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~ 624 (719)
|||||+||||+|+.|+||+|+.++|.+|++.+.+++.+...+++..+|+...|.||++++.+|.+|.+.|+++.
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------ 372 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------ 372 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHH
Q 005014 625 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDA 666 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~ 666 (719)
...+|++||+-|..++-..-++.
T Consensus 373 -------------------rvhvtqedfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQKDSEK 395 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHhccccc
Confidence 34799999999988765444433
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.9e-46 Score=409.78 Aligned_cols=398 Identities=26% Similarity=0.408 Sum_probs=305.4
Q ss_pred CCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHH
Q 005014 213 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292 (719)
Q Consensus 213 ~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~ 292 (719)
.|.++++.+++.++.+. .+...|.++........+.+|+.+.+ -.+++.|.+ +-..+++|.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~~---------~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLNDI---------SISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcch---------HHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 47899999999887321 13344444443343444445444432 357777874 56788999999999
Q ss_pred HHHHHHHHhcCCCC-CCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHh
Q 005014 293 RLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTA 371 (719)
Q Consensus 293 R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a 371 (719)
...+++........ .+...++.+++.+.|++..++..++..+... . ..+. .+.+. ...+.-.+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~----~-~~~~--~~~~~--------~i~~~k~q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIAT----Y-KTID--ENSIP--------LILEEKKQI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----c-CCCC--hhhHH--------HHHHHHHHH
Confidence 99999877653322 2345688999999999999888777653211 0 0010 00000 000111111
Q ss_pred hccCCCCcccceeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh
Q 005014 372 LGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 451 (719)
Q Consensus 372 l~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~ 451 (719)
+.. +...+ ...+..+|+++||++.+|+.+.+.... .......+|+.+++|+|||||||||||++|+++|+++
T Consensus 212 ~~~---~~~le--~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 ISQ---TEILE--FYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hhh---hcccc--ccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 111 11111 113567899999999999999865432 2334567799999999999999999999999999999
Q ss_pred CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCC
Q 005014 452 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK 531 (719)
Q Consensus 452 ~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 531 (719)
+.+|+.++++.+.++|+|+++.+++.+|+.|+...||||||||||.++.++... ..++...+++++||+.|+. ...
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~ 359 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKS 359 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999998765432 2345788999999999985 345
Q ss_pred cEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCC--CCccCHHHHHHHccCCCHHHHHHHHHH
Q 005014 532 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV--SKDVDLRALAKYTQGFSGADITEICQR 609 (719)
Q Consensus 532 ~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~--~~~~d~~~la~~~~~~sg~di~~~~~~ 609 (719)
+|+||+|||+++.|||+++||||||++++|++|+.++|.+||+.++++... ..+.|++.+|+.|+||||+||+++|.+
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999988643 357899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCC--CCHHHHHHHHHHHHH
Q 005014 610 ACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS--VSDADIRKYQAFAQT 677 (719)
Q Consensus 610 A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~s--v~~~~~~~~~~~~~~ 677 (719)
|+..|..+. ..++.+||..|++++.|+ ...++++.+++|...
T Consensus 440 A~~~A~~~~--------------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 440 AMYIAFYEK--------------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHHHcC--------------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 998886532 368999999999999996 567899999999875
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-49 Score=408.33 Aligned_cols=242 Identities=40% Similarity=0.712 Sum_probs=228.9
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 467 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 467 (719)
.+++|+|+-|+++.|++|.+.+.+ ++.|..|.++|-+.|+|+||+||||||||+||+|+|++.+.+|++..++++-.+|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 478999999999999999999986 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc
Q 005014 468 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 547 (719)
Q Consensus 468 ~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~ 547 (719)
+|...+.||.+|+.|+..+||||||||||++.++|.... ....+..+||||.+|||+..+.+||||+|||+|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 999999999999999999999999999999999997642 22788999999999999999999999999999999999
Q ss_pred ccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005014 548 ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 627 (719)
Q Consensus 548 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~ 627 (719)
||.||||||++|.+|.||...|.+||+.|+++.+++.++|+..||+-|.|||||||.|+++.|+..|..++
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--------- 525 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--------- 525 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhh
Q 005014 628 RRSENPEAMEEDVEDEVAEIKAVHFEESMKY 658 (719)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~ 658 (719)
...|+|+|++-|-.+
T Consensus 526 ----------------a~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 526 ----------------AEMVTMKHLEFAKDR 540 (752)
T ss_pred ----------------cccccHHHHhhhhhh
Confidence 336899999988554
No 16
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-47 Score=367.47 Aligned_cols=268 Identities=38% Similarity=0.704 Sum_probs=246.1
Q ss_pred CCCcccceeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeE
Q 005014 376 NPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 455 (719)
Q Consensus 376 ~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~ 455 (719)
.|+...-.+.+.|++++.|+||..+..+.|++.++.|+.+|+.|.++|+.||+|+|||||||||||++|+++|+..++.|
T Consensus 160 dpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 160 DPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred CCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 34444445667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEE
Q 005014 456 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 535 (719)
Q Consensus 456 i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~v 535 (719)
|.|-+++|..+|+|+..+.+|++|+.|+...-|||||||||.+.+.|-....+.+....|.+-+|+++|||+...+++-|
T Consensus 240 irvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikv 319 (435)
T KOG0729|consen 240 IRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV 319 (435)
T ss_pred EeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999998665444555677888899999999999999999
Q ss_pred EEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 005014 536 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 615 (719)
Q Consensus 536 i~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~ 615 (719)
++|||+|+.|||||+||||+|+.++|.+||.+.|..||+.+.+.+.+..++-++.+|..+.+-+|++|+.+|.+|.+.|+
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfai 399 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI 399 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005014 616 RENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQ 676 (719)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~ 676 (719)
+.. ....|..||.+|..++ ++.|.+|..
T Consensus 400 rar-------------------------rk~atekdfl~av~kv--------vkgy~kfsa 427 (435)
T KOG0729|consen 400 RAR-------------------------RKVATEKDFLDAVNKV--------VKGYAKFSA 427 (435)
T ss_pred HHH-------------------------hhhhhHHHHHHHHHHH--------HHHHHhccC
Confidence 865 2267889999999887 556665543
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-48 Score=373.49 Aligned_cols=249 Identities=40% Similarity=0.724 Sum_probs=236.1
Q ss_pred ccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 386 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
..|.-+|.|+||++...+++++.++.|+.||+.+..+|++||+|++|||+||||||.||+|+|+...+.|+.+-+++|+.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 005014 466 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 545 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l 545 (719)
+|.|+..+.+|++|+.|...+|+|+||||||++..+|-.+++.......|.+-+||+++||+.++..|-||+|||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999997766555566778888999999999999999999999999999
Q ss_pred CcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 546 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 625 (719)
Q Consensus 546 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~ 625 (719)
||||+||||+|+.|.||.||...++.||+.+..++.+..+++++.+...-+.+|||||+++|.+|.+.|+++.
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999998899999999999999999999976
Q ss_pred HhhhcCCCcccccccccccccccHHHHHHHHhhc
Q 005014 626 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 659 (719)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~ 659 (719)
...|+++||.+|.+++
T Consensus 411 ------------------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 ------------------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred ------------------HhhccHHHHHHHHHHH
Confidence 2379999999998765
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-47 Score=364.79 Aligned_cols=251 Identities=42% Similarity=0.722 Sum_probs=238.1
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
-+.|.-.++||||++...++|.+.+..|+.|++.|.++|+.||+|+|+|||||||||++|++.|...+..|+.+-++.+.
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 34577789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 544 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ 544 (719)
.+|+|+..+.+|..|..|+..+|+||||||+|.+..+|-.+....+....|.+-+||+++||+.+...|-||+||||.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 99999999999999999999999999999999999999876555556677888899999999999999999999999999
Q ss_pred CCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 545 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 624 (719)
Q Consensus 545 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~ 624 (719)
|||||+|+||+|+.|+||.|+.+.|.+|++.+.+++.+..|+++++||+.|++|+|++++++|-+|.+.|+++.
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~------ 396 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG------ 396 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHhhhcCCCcccccccccccccccHHHHHHHHhhcC
Q 005014 625 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 660 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~ 660 (719)
..+|+.+||.+++..++
T Consensus 397 -------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 -------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred -------------------cccccHHHHHHHHHHHH
Confidence 34799999999987664
No 19
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-46 Score=402.40 Aligned_cols=251 Identities=49% Similarity=0.848 Sum_probs=240.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|+||||+++.+.+|++.+.+|++||+.|.++|+.+++|||||||||||||++|+++|++.+..|+.|.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHH
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 272 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~a 272 (719)
+|+|++++.++.+|+.|+...|||+|+||||.++..+++..++...|+++||++.||++....+|+|||+||+|+.||++
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999997777788999999999999999999999999999999999999
Q ss_pred hhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccch
Q 005014 273 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDET 352 (719)
Q Consensus 273 l~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 352 (719)
+.||||||+.|++|+||.+.|.+||+.+++++++.+++++..+++.|+||+|+||..+|++|+..++++..+
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------- 658 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------- 658 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hhHhHhhccccchHHHHHhhccCCCC
Q 005014 353 IDAEILNSMAVTDEHFKTALGTSNPS 378 (719)
Q Consensus 353 ~~~~~~~~~~v~~~~~~~al~~~~ps 378 (719)
...+..+||.+++...+++
T Consensus 659 -------a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 659 -------ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred -------cccccHHHHHHHHHhhccc
Confidence 3457889999999888765
No 20
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-46 Score=393.71 Aligned_cols=270 Identities=43% Similarity=0.757 Sum_probs=246.9
Q ss_pred cccccCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEech
Q 005014 109 EDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP 188 (719)
Q Consensus 109 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~ 188 (719)
+.....++++|+||||+++...+|...+..|.++|++|+.+|+..|.||||+||||||||.||+++|++.+..|+.|.|+
T Consensus 500 EGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGP 579 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGP 579 (802)
T ss_pred ccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCH
Confidence 33345789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCC
Q 005014 189 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 268 (719)
Q Consensus 189 ~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ 268 (719)
+++++|+|+++..++.+|+.|+.+.|||||+||+|+|++.++........|+++||+..||++..+..|.|||+||+|+-
T Consensus 580 ELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 580 ELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 99999999999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred CCHHhhccCCCceEEEeCCCChHHHHHHHHHHhc--CCCCCCcccHHHHHHHhC--CCccccHHHHHHHHHHHHHHhhcc
Q 005014 269 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTH--GYVGADLAALCTEAALQCIREKMD 344 (719)
Q Consensus 269 ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~--~~~l~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~~~~ 344 (719)
+||+++|+|||+..++++.|+.++|.+||+.+++ +.++..+++++.|+..+. ||+|+||..||++|++.++++...
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 778889999999999877 999999999999999999988765
Q ss_pred ccccccchhhHhHhhccccchHHHHHhhccCCCCc
Q 005014 345 VIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSA 379 (719)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~ 379 (719)
.++.......... ....++..||..|+..++|+.
T Consensus 740 ~~~~~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 740 EIDSSEDDVTVRS-STIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred hccccCcccceee-eeeeecHHHHHHHHHhcCCCc
Confidence 4433332221111 145678899999999998874
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-45 Score=403.49 Aligned_cols=249 Identities=44% Similarity=0.780 Sum_probs=232.0
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 467 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 467 (719)
..+.|.|+.|++++|++|++.+.+ +++|+.|.++|.+.|+|+||+||||||||+||||+|++.+.||+++++++++.++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999986 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccC-CCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 005014 468 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRG-SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 546 (719)
Q Consensus 468 ~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~-~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld 546 (719)
+|.....++.+|..|+..+|||+|+||||.+..+|+ ...+..+......+||||.+|||+....+|+|+++||+|+.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999994 2333445567789999999999999999999999999999999
Q ss_pred cccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 547 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 625 (719)
Q Consensus 547 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~ 625 (719)
+||+||||||+.|++++|+...|.+|++.++++..++ .++|+..+|.+|.||||+||.++|++|+..|.++.
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~------- 537 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG------- 537 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc-------
Confidence 9999999999999999999999999999999998885 88999999999999999999999999999999976
Q ss_pred HhhhcCCCcccccccccccccccHHHHHHHHhhcCCC
Q 005014 626 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS 662 (719)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~s 662 (719)
...|+..||+.|++.+...
T Consensus 538 ------------------~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 538 ------------------LREIGTKDLEYAIERVIAG 556 (774)
T ss_pred ------------------cCccchhhHHHHHHHHhcc
Confidence 2379999999999855444
No 22
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-45 Score=368.37 Aligned_cols=287 Identities=37% Similarity=0.622 Sum_probs=246.1
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhc-CCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 467 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 467 (719)
.++|+||||++.+++.|++.+..|+.+|+.|...+ +.+++|+|||||||||||+||+++|++.+++|+.|.++.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 68999999999999999999999999999997544 57889999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCC--cEEEEEecCCCCCC
Q 005014 468 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPDII 545 (719)
Q Consensus 468 ~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~--~v~vi~atn~~~~l 545 (719)
+|++++.++.+|..|.+..||||||||+|++++.|++ ....+...+.++|....||+..+. +|+|+||||||..|
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s---~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS---TDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhccc---chHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 9999999999999999999999999999999999943 235678889999999999997665 49999999999999
Q ss_pred CcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH--H
Q 005014 546 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD--I 623 (719)
Q Consensus 546 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~--~ 623 (719)
|.|++| |+..+++++.|+.++|.+||+.++++..++.++|+..+|..|+||||+||+++|+.|++..+++.+... .
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999998764 0
Q ss_pred -HHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHH--HHHHHHHHHHHHhh
Q 005014 624 -ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDA--DIRKYQAFAQTLQQ 680 (719)
Q Consensus 624 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~--~~~~~~~~~~~~~~ 680 (719)
+.................-...+++++||..|...+-++++.+ .....+.|.+.++-
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 0000000000000001112257899999999999888876544 34566677766643
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=387.66 Aligned_cols=253 Identities=44% Similarity=0.732 Sum_probs=235.7
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
.+.|+++|+||||++.+++.|.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 544 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ 544 (719)
.+|+|++++.++.+|..|+...||||||||+|.++.+|.......+....+++.+||+.||++....+++||+|||+|+.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999999888544333334567889999999999988889999999999999
Q ss_pred CCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 545 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 624 (719)
Q Consensus 545 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~ 624 (719)
||||++||||||..|+||+|+.++|..||+.++++.++..++|+..+++.++||||+||+++|++|++.|+++.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------ 370 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------ 370 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred HHhhhcCCCcccccccccccccccHHHHHHHHhhcCCC
Q 005014 625 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS 662 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~s 662 (719)
...|+++||++|+..+...
T Consensus 371 -------------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 -------------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred -------------------CCccCHHHHHHHHHHHHhc
Confidence 2379999999999987554
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.4e-43 Score=339.43 Aligned_cols=244 Identities=39% Similarity=0.713 Sum_probs=219.4
Q ss_pred cCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhh
Q 005014 387 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 466 (719)
Q Consensus 387 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 466 (719)
.+++.++|++|+++.|+..+-.+.+ +.+|+.|.++ .|+.+|||||||||||++|+++|++.+.+++.+++.+|++.
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 5688999999999999987765554 6778877664 57889999999999999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 005014 467 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 546 (719)
Q Consensus 467 ~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld 546 (719)
|+|+..+.|+++|++|++.+|||+||||+|+++-.|... +-.+...+++|.||++|||+..+.+|+.|+|||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 999999999999999999999999999999999887654 334556789999999999999999999999999999999
Q ss_pred cccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 005014 547 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITE-ICQRACKYAIRENIEKDIER 625 (719)
Q Consensus 547 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~-~~~~A~~~a~~~~~~~~~~~ 625 (719)
||+.+ ||...|+|.+|+.++|..|++.+++++|+.-+.+++.+++.|.||||+||.. ++..|...|+.+.
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed------- 339 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED------- 339 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-------
Confidence 99998 9999999999999999999999999999999999999999999999999986 6677777776654
Q ss_pred HhhhcCCCcccccccccccccccHHHHHHHHhhcCCCC
Q 005014 626 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSV 663 (719)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv 663 (719)
...|+.+|++.|+++.+++-
T Consensus 340 ------------------~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 340 ------------------REKVEREDIEKALKKERKRR 359 (368)
T ss_pred ------------------hhhhhHHHHHHHHHhhcccc
Confidence 23689999999999865543
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-43 Score=385.65 Aligned_cols=246 Identities=43% Similarity=0.799 Sum_probs=232.8
Q ss_pred cCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhh
Q 005014 387 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 466 (719)
Q Consensus 387 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 466 (719)
...++|.|+.|.++.|+.+.+.+.+ ++.|..|..+|.+.|+|++|+||||||||+|||++|++.+.||+++++++++.+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3578999999999999999999875 889999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 005014 467 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 546 (719)
Q Consensus 467 ~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld 546 (719)
|+|.....+|.+|..|++++|||+||||||++...|+.+.+.........+||||.+|||+..+..|+||++||||+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999987655555666779999999999999889999999999999999
Q ss_pred cccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 547 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 626 (719)
Q Consensus 547 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~ 626 (719)
|||+||||||+.|.++.||...|.+|++.++++.+++.++|+..+|+.|.||||+|+.+++++|+..|.+++
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n-------- 374 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN-------- 374 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhcCCCcccccccccccccccHHHHHHHHhh
Q 005014 627 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKY 658 (719)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~ 658 (719)
...|++.||.+|..+
T Consensus 375 -----------------~~~i~~~~i~ea~dr 389 (596)
T COG0465 375 -----------------KKEITMRDIEEAIDR 389 (596)
T ss_pred -----------------CeeEeccchHHHHHH
Confidence 347999999999865
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.5e-42 Score=374.20 Aligned_cols=257 Identities=49% Similarity=0.822 Sum_probs=237.8
Q ss_pred eeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccch
Q 005014 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463 (719)
Q Consensus 384 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l 463 (719)
..+.|++.|++++|+++.++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 005014 464 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 543 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~ 543 (719)
.++|+|++++.++.+|+.|+...||||||||+|.++..|+...........+.+.++|.+++++....+++||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999988865433333445678889999999998888999999999999
Q ss_pred CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 544 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 623 (719)
Q Consensus 544 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~ 623 (719)
.+|++++||||||..|+||+|+.++|.+||+.++++.++..++++..+|..|+||||+||+++|++|++.|+++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~----- 356 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD----- 356 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999889999999999999999999999999999998863
Q ss_pred HHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCH
Q 005014 624 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSD 665 (719)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~ 665 (719)
...|+.+||.+|+..++++...
T Consensus 357 --------------------~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 357 --------------------RTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred --------------------CCCcCHHHHHHHHHHHhccccc
Confidence 2369999999999999876554
No 27
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-42 Score=370.96 Aligned_cols=267 Identities=44% Similarity=0.749 Sum_probs=239.3
Q ss_pred ccCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhh
Q 005014 112 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 191 (719)
Q Consensus 112 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~ 191 (719)
+++++++|+||||+++.+..|.+.+.+|++||++|.+ |+.+..|||||||||||||.+|+|+|.++...|+.|.|+++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 4689999999999999999999999999999999965 788899999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC--chHHHHHHHHHHHHHhhcccC--CCcEEEEEecCCCC
Q 005014 192 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--HGEVERRIVSQLLTLMDGLKS--RAHVIVIGATNRPN 267 (719)
Q Consensus 192 ~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~--~~~~~~~v~~~L~~~l~~~~~--~~~vivI~atn~~~ 267 (719)
+.|+|++++++|.+|+.|+...|||||+||+|.++|+++.. .+.+..|+++||+..||++.. ...|+||||||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999998654 467889999999999999984 56899999999999
Q ss_pred CCCHHhhccCCCceEEEeCCCC-hHHHHHHHHHHhcCCCCCCcccHHHHHHHhC-CCccccHHHHHHHHHHHHHHhhccc
Q 005014 268 SIDPALRRFGRFDREIDIGVPD-EVGRLEVLRIHTKNMKLSDDVDLERIAKDTH-GYVGADLAALCTEAALQCIREKMDV 345 (719)
Q Consensus 268 ~ld~al~r~~Rf~~~i~i~~P~-~~~R~~il~~~~~~~~l~~~~~l~~la~~t~-g~~~~dl~~l~~~a~~~~~~~~~~~ 345 (719)
-+||+|.||||||+-+++++++ .+.+..+|+..++++.+..++++.++|+.++ .|+|+|+-++|..|.+.++++....
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999885 5668899999999999999999999999975 6999999999999999999988765
Q ss_pred cccccchhhHhHhhccccchHHHHHhhccCCCCc
Q 005014 346 IDLEDETIDAEILNSMAVTDEHFKTALGTSNPSA 379 (719)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~ 379 (719)
++...............++++||.++..+..|+-
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 4332111111223457799999999999998874
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.5e-42 Score=370.51 Aligned_cols=251 Identities=40% Similarity=0.709 Sum_probs=233.0
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
.+.|..+|+||+|++..++.+.+.+.+|+.+++.+..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 544 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ 544 (719)
++|+|++++.++.+|+.|+...||||||||||.++.+|....+..+....+.+.+||++||++....++.||+|||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 99999999999999999999999999999999999888654333333456788899999999988888999999999999
Q ss_pred CCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 545 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 624 (719)
Q Consensus 545 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~ 624 (719)
||++++||||||+.|+||+||.++|.+||+.+++++.+..++|+..++..++||||+||+++|++|++.|+++.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHhhhcCCCcccccccccccccccHHHHHHHHhhcC
Q 005014 625 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 660 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~ 660 (719)
...|+.+||.+|+.++.
T Consensus 409 -------------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 -------------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred -------------------CCccCHHHHHHHHHHHH
Confidence 23799999999998864
No 29
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=360.41 Aligned_cols=277 Identities=38% Similarity=0.662 Sum_probs=237.3
Q ss_pred eccCCCccccc--cccHHH-HHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC-eEEEEec
Q 005014 385 VEVPNVNWEDI--GGLENV-KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKG 460 (719)
Q Consensus 385 ~~~~~~~~~~i--~g~~~~-k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~-~~i~v~~ 460 (719)
+-.|+..|+++ ||++.- -+..++.....+-.|+..+++|.+.-+|+|||||||||||++|+.+...+++ .--.|++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 34567777764 587643 3445666666677889999999999999999999999999999999999975 3346899
Q ss_pred cchhhhccCCchhhHHHHHHHHHh--------CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCc
Q 005014 461 PELLTMWFGESEANVREIFDKARQ--------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 532 (719)
Q Consensus 461 ~~l~~~~~g~se~~i~~~f~~a~~--------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 532 (719)
++++++|+|+||.+||.+|..|.. +.-.||+|||||+++.+||+.. +..++++.++||||.-|||+....+
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA-GSTGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC-CCCCccHHHHHHHHHhcccHHhhhc
Confidence 999999999999999999998854 3356999999999999999874 5578999999999999999999999
Q ss_pred EEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccC----CCCCccCHHHHHHHccCCCHHHHHHHHH
Q 005014 533 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS----PVSKDVDLRALAKYTQGFSGADITEICQ 608 (719)
Q Consensus 533 v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~~~~d~~~la~~~~~~sg~di~~~~~ 608 (719)
++||+-|||+|.||+||||||||...+++.+||+..|.+|++.+.+++ .++.|+|+++||..|.+||||+|+.+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999998765 4778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCC--CCHHHHHHHH
Q 005014 609 RACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS--VSDADIRKYQ 672 (719)
Q Consensus 609 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~s--v~~~~~~~~~ 672 (719)
.|.-.|+.+.+..... ..+ .....+.-.|+++||..||..++|. ++++++++|.
T Consensus 450 sA~S~A~nR~vk~~~~---------~~~-~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGK---------VEV-DPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHHHhhhccCcc---------eec-CchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 9999999998764311 111 1112334579999999999999996 7888888876
No 30
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=357.45 Aligned_cols=279 Identities=38% Similarity=0.647 Sum_probs=249.0
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
...+++.|+++.|++.+|+.+.+.+.||...++.|..+ ..+.+|+||.||||+|||+|++|+|.++++.|+.++++.|.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 34567999999999999999999999999999999874 45678999999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCC--CCcEEEEEecCCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGATNRP 542 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~atn~~ 542 (719)
++|+|++|+.++.+|+-|+...|+|+|+||||+++.+|.. .......|+..++|..+++... .++|+||||||+|
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P 300 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRP 300 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCc
Confidence 9999999999999999999999999999999999999943 3456778999999999999853 4689999999999
Q ss_pred CCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCC-CCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005014 543 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 621 (719)
Q Consensus 543 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~-~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~ 621 (719)
|.+|.|++| ||.+++|+|+|+.++|..+|+.++.+.+. ..+.|++.+++.|+||||.||.++|++|++.-.+.....
T Consensus 301 ~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~ 378 (428)
T KOG0740|consen 301 WELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT 378 (428)
T ss_pred hHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc
Confidence 999999999 99999999999999999999999987743 356889999999999999999999999999887765332
Q ss_pred HHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhc
Q 005014 622 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQS 681 (719)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~~ 681 (719)
. .......+..+.++..||+.|++.++++++...++.|++|...|+..
T Consensus 379 ~------------~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 379 T------------DLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred h------------hhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 0 01112235577899999999999999999999999999999999753
No 31
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-40 Score=333.97 Aligned_cols=263 Identities=41% Similarity=0.669 Sum_probs=235.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
-+++.|+||.|+.++++-|.+.+.+|+..|++|+.+ ..|.++||++||||||||+||+++|.+++..|+.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 467899999999999999999999999999999975 6788999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc-hHHHHHHHHHHHHHhhcccCC----CcEEEEEecCCCCC
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH-GEVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPNS 268 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~-~~~~~~v~~~L~~~l~~~~~~----~~vivI~atn~~~~ 268 (719)
|.|++++.++.+|+.|+...|++|||||||.|+..++... .+..+|+...|+-.||+.... ..|+|+++||.|++
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWd 364 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWD 364 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcc
Confidence 9999999999999999999999999999999999887653 345689999999999987653 34889999999999
Q ss_pred CCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccc
Q 005014 269 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 348 (719)
Q Consensus 269 ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 348 (719)
||.+|+| ||...|++|.|+.++|..+++..++...+.++++++.++..++||+|+||..+|++|++.++++....+.-
T Consensus 365 iDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 365 IDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred hHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999987654432
Q ss_pred ccch-hhHhHhhccccchHHHHHhhccCCCCcc
Q 005014 349 EDET-IDAEILNSMAVTDEHFKTALGTSNPSAL 380 (719)
Q Consensus 349 ~~~~-~~~~~~~~~~v~~~~~~~al~~~~ps~~ 380 (719)
.+.. +..+.. ...++.+||..|+..++|+..
T Consensus 443 ~ei~~lakE~~-~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 443 REIRQLAKEEP-KMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhhhhhhhcc-ccccchhhHHHHHHHcCcCCC
Confidence 2211 122222 366999999999999988754
No 32
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3e-39 Score=309.71 Aligned_cols=304 Identities=34% Similarity=0.577 Sum_probs=257.8
Q ss_pred hhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEEEEEEecCCceEEECCCceEEecCCCccccccccCCCCccccccc
Q 005014 45 GNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGG 124 (719)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~G 124 (719)
.++|+.|.+..|.+ ..+..|+.+.-.+....+.|+|+++.|.+.++++..|.+..+. +.. ......++++++|++|
T Consensus 50 ~~~F~~YArdQW~G--e~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~-~~~-~~~e~~~~it~ddViG 125 (368)
T COG1223 50 PEVFNIYARDQWLG--EVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLET-PRE-EDREIISDITLDDVIG 125 (368)
T ss_pred HHHHHHHHHHhhcc--eeeecCceEeecccccccceeEEEEeCCCCceecceEEEEecC-cch-hhhhhhccccHhhhhc
Confidence 46899999999975 4689999877665556788999999999987777666554432 221 1123467899999999
Q ss_pred hHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHH
Q 005014 125 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRK 204 (719)
Q Consensus 125 ~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~ 204 (719)
.++++++++-++.+ +.+|+.|..+ .|++||+|||||||||++|+++|++...+++.++..++++.++|+...+++.
T Consensus 126 qEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihe 201 (368)
T COG1223 126 QEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201 (368)
T ss_pred hHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHH
Confidence 99999999988887 8999888654 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEccccccCCCCCCC--chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceE
Q 005014 205 AFEEAEKNAPSIIFIDEIDSIAPKREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDRE 282 (719)
Q Consensus 205 vf~~a~~~~p~iL~iDEid~l~~~~~~~--~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~ 282 (719)
+++.|+...|||+||||+|+++-++.-. .++ -..+++.|++.||++..+..|+.|++||+|+.+|+++|+ ||..+
T Consensus 202 ly~rA~~~aPcivFiDE~DAiaLdRryQelRGD-VsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeE 278 (368)
T COG1223 202 LYERARKAAPCIVFIDELDAIALDRRYQELRGD-VSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEE 278 (368)
T ss_pred HHHHHHhcCCeEEEehhhhhhhhhhhHHHhccc-HHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhhe
Confidence 9999999999999999999998776422 122 256889999999999999999999999999999999998 99999
Q ss_pred EEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHH-HHHHHHHHHhhccccccccchhhHhHhhcc
Q 005014 283 IDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALC-TEAALQCIREKMDVIDLEDETIDAEILNSM 361 (719)
Q Consensus 283 i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (719)
|+|..|+.++|.+|++.+.+.+++.-+.++..+++.+.|++|+||..-+ +.|..+++... ..
T Consensus 279 IEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed-----------------~e 341 (368)
T COG1223 279 IEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED-----------------RE 341 (368)
T ss_pred eeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-----------------hh
Confidence 9999999999999999999999999999999999999999999997654 44444555432 23
Q ss_pred ccchHHHHHhhccCC
Q 005014 362 AVTDEHFKTALGTSN 376 (719)
Q Consensus 362 ~v~~~~~~~al~~~~ 376 (719)
.++.+|+..|+.+..
T Consensus 342 ~v~~edie~al~k~r 356 (368)
T COG1223 342 KVEREDIEKALKKER 356 (368)
T ss_pred hhhHHHHHHHHHhhc
Confidence 477888998887643
No 33
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-40 Score=311.61 Aligned_cols=246 Identities=42% Similarity=0.778 Sum_probs=226.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
+.++-+|+-+||++.++++|++.+++|.+||++|+++|+..|+|+|||||||+|||.||+++|....+.|+.++++++.+
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
+|.|+....++.+|-.|+.+.|+|+|+||||.+...+..+. +..-+|..-.|++.+|++....++-||.+||+.+-+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999987764322 223345556678889999999999999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
||+|.|+||+++.|+||+|+++.|.+||+.|.+++.+...+++..+|....|.+|+++..+|.+|++.+++..
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cchhhHhHhhccccchHHHHHhhccC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
...++.+||+-|...+
T Consensus 373 ----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 ----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred ----------hccccHHHHHHHHHHH
Confidence 2568899999887654
No 34
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-41 Score=330.48 Aligned_cols=247 Identities=41% Similarity=0.724 Sum_probs=229.2
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 467 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 467 (719)
.+++|+.++|+-.+...+++.+..|+.++++|.++|+++|.|++||||||+|||.+|+++|..++.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc
Q 005014 468 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 547 (719)
Q Consensus 468 ~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~ 547 (719)
.|++.+.||+.|..|+...|||||+||||++.++|-+.....+....+.+-.|+++|||+....+|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999999554444455566777889999999999999999999999999999
Q ss_pred ccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005014 548 ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 627 (719)
Q Consensus 548 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~ 627 (719)
||+||||+|+.+++|+|+...|..|++.+.........+|.+.+.+..+||+|+|++++|++|.+.|+++.
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~--------- 357 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE--------- 357 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh---------
Confidence 99999999999999999999999999999888877788999999999999999999999999999988764
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhhc
Q 005014 628 RRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 659 (719)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~ 659 (719)
...+..+||..+..+.
T Consensus 358 ----------------~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 358 ----------------RDEVLHEDFMKLVRKQ 373 (388)
T ss_pred ----------------hHHHhHHHHHHHHHHH
Confidence 2367888999888765
No 35
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=339.67 Aligned_cols=243 Identities=43% Similarity=0.706 Sum_probs=226.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
..+++|+|+-|+++++++|.+++++ ++.|+.|.+||-.-|+||||+||||||||+|||++|++.+.+|++..|+++-..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 4578999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHh
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 273 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al 273 (719)
++|....+++.+|+.|+.+.||||||||||.+..++........+..++||+..||++.++..|+|||+||.|+.+|++|
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL 456 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKAL 456 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHh
Confidence 99999999999999999999999999999999999876666677888999999999999999999999999999999999
Q ss_pred hccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchh
Q 005014 274 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETI 353 (719)
Q Consensus 274 ~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~ 353 (719)
.||||||++|.+|.||...|.+||+.|+.++.+..++|+.-||+-|.||+|+||.+++.+|++.+....
T Consensus 457 ~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg----------- 525 (752)
T KOG0734|consen 457 TRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG----------- 525 (752)
T ss_pred cCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC-----------
Confidence 999999999999999999999999999999999999999999999999999999999999998765433
Q ss_pred hHhHhhccccchHHHHHhhcc
Q 005014 354 DAEILNSMAVTDEHFKTALGT 374 (719)
Q Consensus 354 ~~~~~~~~~v~~~~~~~al~~ 374 (719)
...+++.+++.|-..
T Consensus 526 ------a~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 526 ------AEMVTMKHLEFAKDR 540 (752)
T ss_pred ------cccccHHHHhhhhhh
Confidence 244667777665443
No 36
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2e-39 Score=363.85 Aligned_cols=250 Identities=43% Similarity=0.792 Sum_probs=228.9
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
.+.|.++|++++|++++|+.+.+.+.+ +.+++.+...|..+++|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 345789999999999999999998876 7888999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 544 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ 544 (719)
+.|+|.+++.++.+|+.|+...||||||||||.++.+|+...+.......+++++||.+||++.+..+++||+|||+|+.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 99999999999999999999999999999999999888654323334557899999999999988889999999999999
Q ss_pred CCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 545 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 624 (719)
Q Consensus 545 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~ 624 (719)
|||+++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.+.||||+||+++|++|+..|.++.
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~------ 279 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN------ 279 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999998888888999999999999999999999999998876643
Q ss_pred HHhhhcCCCcccccccccccccccHHHHHHHHhhcC
Q 005014 625 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 660 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~ 660 (719)
...|+.+||+.|+..+.
T Consensus 280 -------------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 -------------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred -------------------CCCCCHHHHHHHHHHHh
Confidence 23699999999998764
No 37
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-39 Score=306.82 Aligned_cols=294 Identities=37% Similarity=0.662 Sum_probs=247.0
Q ss_pred CCCEEEEecCcee-EEEEEEEe------cCCceEEECCCceEEecCCCcc---cc---ccccCCCCccccccchHHHHHH
Q 005014 65 KGDLFLVRGGMRS-VEFKVIET------DPPEYCVVAPDTEIFCEGEPVR---RE---DENRLDEVGYDDVGGVRKQMAQ 131 (719)
Q Consensus 65 ~g~~~~~~~~~~~-~~f~v~~~------~p~~~~~~~~~t~~~~~~~~~~---~~---~~~~~~~~~~~~i~G~~~~~~~ 131 (719)
+|-...+..+.+. +++-|+.. .|++.+.+..++.+.++.-|.. +. ....-+.-.|+||||+++++++
T Consensus 103 kgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqE 182 (424)
T KOG0652|consen 103 KGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQE 182 (424)
T ss_pred cceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHH
Confidence 3444444444333 33445543 3667778888887766654431 11 1123355689999999999999
Q ss_pred HHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHh
Q 005014 132 IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK 211 (719)
Q Consensus 132 l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~ 211 (719)
|.+.+.+|+.|++.|+++|+.||+|+|+|||||||||.+||+.|...+..|+.+-++.+.+.+.|+..+.++..|..|..
T Consensus 183 LvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKE 262 (424)
T KOG0652|consen 183 LVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 262 (424)
T ss_pred HHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCC
Q 005014 212 NAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVP 288 (719)
Q Consensus 212 ~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P 288 (719)
..|+||||||+|.+..++-.+. +..-+|..-.|++.+|++.+...|-||++||+.+-+||+|.|.||+++.|+||.|
T Consensus 263 kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~P 342 (424)
T KOG0652|consen 263 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHP 342 (424)
T ss_pred cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCC
Confidence 9999999999999987764322 2222444556778889999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHH
Q 005014 289 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHF 368 (719)
Q Consensus 289 ~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 368 (719)
+++.|.+|++.|.++|.+.++++++++++.|.+|.|+...++|.+|++.++++.. ..++.+||
T Consensus 343 ne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a-----------------tev~heDf 405 (424)
T KOG0652|consen 343 NEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA-----------------TEVTHEDF 405 (424)
T ss_pred ChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc-----------------ccccHHHH
Confidence 9999999999999999999999999999999999999999999999999998753 23567777
Q ss_pred HHhhccC
Q 005014 369 KTALGTS 375 (719)
Q Consensus 369 ~~al~~~ 375 (719)
...+..+
T Consensus 406 megI~eV 412 (424)
T KOG0652|consen 406 MEGILEV 412 (424)
T ss_pred HHHHHHH
Confidence 7665443
No 38
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.8e-39 Score=351.69 Aligned_cols=251 Identities=43% Similarity=0.760 Sum_probs=214.2
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC----------e
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------N 454 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~----------~ 454 (719)
.+.|+++|++|+|++..++.+++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++. .
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 456899999999999999999999999999999999999999999999999999999999999999754 3
Q ss_pred EEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCC
Q 005014 455 FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK 530 (719)
Q Consensus 455 ~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 530 (719)
|+.++++++.++|+|++++.++.+|+.++.. .||||||||+|+++..|+.. ..+....+++++||++||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~--~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG--VSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC--ccchHHHHHHHHHHHHhcccccC
Confidence 7788899999999999999999999998764 69999999999999888653 22334578899999999999888
Q ss_pred CcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhcc-CCCC---------CccCHHHHHHH------
Q 005014 531 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-SPVS---------KDVDLRALAKY------ 594 (719)
Q Consensus 531 ~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-~~~~---------~~~d~~~la~~------ 594 (719)
.+++||+|||+++.||||++||||||.+|+|++|+.++|.+||+.++.. .++. ...++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999864 3441 11222233222
Q ss_pred -----------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHH
Q 005014 595 -----------------------TQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVH 651 (719)
Q Consensus 595 -----------------------~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 651 (719)
++.+||++|+++|.+|...|+.+.+... ...++.+|
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~---------------------~~~~~~~~ 470 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG---------------------QVGLRIEH 470 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC---------------------CcCcCHHH
Confidence 4568899999999999999888876321 23788999
Q ss_pred HHHHHhh
Q 005014 652 FEESMKY 658 (719)
Q Consensus 652 ~~~a~~~ 658 (719)
+..|+..
T Consensus 471 l~~a~~~ 477 (512)
T TIGR03689 471 LLAAVLD 477 (512)
T ss_pred HHHHHHH
Confidence 9999864
No 39
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-39 Score=306.20 Aligned_cols=246 Identities=46% Similarity=0.742 Sum_probs=226.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|.||||++-+++++++.+++|+.|.++++.+|+.||+|||+|||||||||+|++++|+...+.|+.+.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
+|.|+....++.+|..|+.+.|+|+||||+|.++.++-.. .+..-+|++-.|++.||++.+..+|-||.+||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 9999999999999999999999999999999998776322 2223467778889999999999999999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
||+|.|+||+++.|+||.||..++.-++...+.+|.+.+++|++.+..+....+++++.++|++|++.+++...
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr------ 381 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR------ 381 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred cchhhHhHhhccccchHHHHHhhccC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
..+...||+++....
T Consensus 382 -----------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 -----------YVVLQKDFEKAYKTV 396 (408)
T ss_pred -----------eeeeHHHHHHHHHhh
Confidence 345677888776544
No 40
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-39 Score=313.95 Aligned_cols=246 Identities=46% Similarity=0.776 Sum_probs=225.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
+.+.-+|.||||++.++++|.+.+++|+.||++++..|+.||+||+|||+||||||.||+++|+...+.|+.+-++++++
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHH---HHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE---RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~---~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
+|.|+....++++|+.|..+.|+|+||||||++..++....+.-+ +|..-.|++.+|++..++.|-||.+||..+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 999999999999999999999999999999999988754333222 33344677788999999999999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
||+|.|+||+++.|+|+.||+..+..|+.+|+.+|.+..+++++.+...-..++|+||.++|.+|.+-+++...
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR------ 411 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR------ 411 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred cchhhHhHhhccccchHHHHHhhccC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
+.++.+||.++.+.+
T Consensus 412 -----------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 -----------MKVTMEDFKKAKEKV 426 (440)
T ss_pred -----------hhccHHHHHHHHHHH
Confidence 558889999887654
No 41
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.5e-38 Score=343.70 Aligned_cols=250 Identities=51% Similarity=0.840 Sum_probs=230.3
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
.+.|.+.|++++|+++.++.+.+.+.+|+.+++.+..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 544 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ 544 (719)
.+|+|+....++.+|+.++...|+||||||+|.+...|.......+....+.+.+++.+++++....++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999877654333333456788899999999877788999999999999
Q ss_pred CCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 545 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 624 (719)
Q Consensus 545 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~ 624 (719)
+|++++||||||+.|+|++|+.++|.+||+.++.+..+..++++..+++.++||||+||+++|++|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999999999999999999999999888888999999999999999999999999999998764
Q ss_pred HHhhhcCCCcccccccccccccccHHHHHHHHhhc
Q 005014 625 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 659 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~ 659 (719)
...|+.+||.+|+.++
T Consensus 348 -------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -------------------CCccCHHHHHHHHHHh
Confidence 2379999999999865
No 42
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-39 Score=307.41 Aligned_cols=246 Identities=42% Similarity=0.748 Sum_probs=223.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
.-++++|.|+||+++++++|++.+++|+.||+.|-++|+.||++||+|||||||||.+||++|+..++.|+.|-++++.+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
+|.|+....++.+|+.|+....|++|+||||++...+-.. .+..-+|..-.|.+.+|++..++++-|+.+||+|+.+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 9999999999999999999999999999999998765222 2222344555677888999999999999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
||+|.|+||+++.++|..||.+.|..|++.|.+.|.+..++.++.+++.+...+|+++..+|.+|.+.+++....
T Consensus 330 dpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk----- 404 (435)
T KOG0729|consen 330 DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK----- 404 (435)
T ss_pred CHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred cchhhHhHhhccccchHHHHHhhccC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
..+..||..|..++
T Consensus 405 ------------~atekdfl~av~kv 418 (435)
T KOG0729|consen 405 ------------VATEKDFLDAVNKV 418 (435)
T ss_pred ------------hhhHHHHHHHHHHH
Confidence 25667777776543
No 43
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-38 Score=357.92 Aligned_cols=445 Identities=35% Similarity=0.545 Sum_probs=325.7
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEechh
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCINGPE 189 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~-----~~~i~v~~~~ 189 (719)
..++|++|||++..+.+|++++.+|+.||+.|.++++.|+++||++||||||||..|+++|..+. ..|+.-.+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 35799999999999999999999999999999999999999999999999999999999999874 3456667899
Q ss_pred hhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 190 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 190 l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
..++|+|+.+..++.+|++|+..+|+|+|+||||-+++.+..........++..|+.+|+++..++.|+||||||+|+.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 348 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 348 (719)
||++||+|||+++++++.|+.+.|..|+..+.++..-. ...-+..+|+.+.||.|+|+.+||.+|++.++++....+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999998877632 23347889999999999999999999999999887665544
Q ss_pred ccchhhHhHhhccccchHHHHHhhccCCCCcccceeec-cCCCcc-ccccccHHHHHHhhhc-------------cccCC
Q 005014 349 EDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVE-VPNVNW-EDIGGLENVKRELQET-------------VQYPV 413 (719)
Q Consensus 349 ~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~-~~~~~~-~~i~g~~~~k~~l~~~-------------i~~~~ 413 (719)
....... ......+...+|..|+....|+..+..... .|.-.. .-+.+.......++.. ..+.+
T Consensus 500 s~~kl~~-d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLLI-DVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred ccccccc-cchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 3332221 112344888999999999888877653222 111100 0011111111111111 11100
Q ss_pred CChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-CCeEEEEeccchhhhc-cCCchhhHHHHHHHHHhCCCEEEE
Q 005014 414 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMW-FGESEANVREIFDKARQSAPCVLF 491 (719)
Q Consensus 414 ~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-~~~~i~v~~~~l~~~~-~g~se~~i~~~f~~a~~~~p~il~ 491 (719)
+..+..-.+.+--...+++.|..|.|-+.+..++-+.+ +.+..+...+.+++.- .+..+..|..+|..|+...|||+|
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 00000000111112338899999999999999998876 4444444455555443 455678899999999999999999
Q ss_pred EeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHH
Q 005014 492 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQ 571 (719)
Q Consensus 492 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~ 571 (719)
|-.+|....... ..+...|+..++.......+..+-+-+.-+.-.+ ..+..+..|..+.+..
T Consensus 659 ip~~d~w~~~~p----------~s~~~~~~~~l~~~~~~t~i~e~~t~~~~~~~~~--------~~~~t~~~p~~~s~~~ 720 (1080)
T KOG0732|consen 659 IPNVDEWARVIP----------VSFLEEFLSSLDEKALSTPILELHTWDTSFESVN--------KSVVTLSKPSAESTGA 720 (1080)
T ss_pred ccchhhhhhcCc----------chhhhcchhcchhhhhccchhhhccccccccccC--------ccccccccchhhhhHH
Confidence 999998765432 2234445444443322222222222111111001 0233455677777777
Q ss_pred HHHHHhc
Q 005014 572 IFKACLR 578 (719)
Q Consensus 572 Il~~~~~ 578 (719)
.++..++
T Consensus 721 ff~r~I~ 727 (1080)
T KOG0732|consen 721 FFKRLIR 727 (1080)
T ss_pred HHHHHHH
Confidence 6666654
No 44
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=6.7e-38 Score=354.25 Aligned_cols=246 Identities=43% Similarity=0.780 Sum_probs=226.4
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 467 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 467 (719)
+.++|+|++|++++++.+.+.+.+ ++.++.+..++...++|+||+||||||||++|+++|++++.+|+.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 468999999999999999988765 7788889999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc
Q 005014 468 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 547 (719)
Q Consensus 468 ~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~ 547 (719)
+|.....++.+|+.|+...||||||||||.+...|+.+.+..+.....++++||.+||++....+++||+|||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99999999999999999999999999999999888765444445567899999999999988889999999999999999
Q ss_pred ccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005014 548 ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 627 (719)
Q Consensus 548 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~ 627 (719)
|++||||||+.|+|++|+.++|..||+.++++..+..++++..+|+.+.||||+||+++|++|+..|.++.
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--------- 407 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--------- 407 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999999888889999999999999999999999999999887654
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhhc
Q 005014 628 RRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 659 (719)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~ 659 (719)
...|+++||+.|+..+
T Consensus 408 ----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred ----------------CCCcCHHHHHHHHHHH
Confidence 2369999999999865
No 45
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=333.68 Aligned_cols=230 Identities=42% Similarity=0.723 Sum_probs=221.7
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhc
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 194 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~ 194 (719)
..++|+||||+.++++.+.+.+.+|-+||.+|.+..+.-+.|||||||||||||.||.++|...+..|+.|.|+++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhh
Q 005014 195 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALR 274 (719)
Q Consensus 195 ~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~ 274 (719)
.|.+++.+|.+|..|+...|||||+||+|.++|+++.....+..|+++||++.||+...-..|.|+|+|.+|+.+||||.
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 99999999999999999999999999999999999988888999999999999999998889999999999999999999
Q ss_pred ccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcc
Q 005014 275 RFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 344 (719)
Q Consensus 275 r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 344 (719)
|+||+++.++.+.|++.+|.+|++..........++|++.+|..|.||+|+|+..++..|.+.++.+...
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999889999999999999999999999999999999888776543
No 46
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.8e-36 Score=345.64 Aligned_cols=247 Identities=40% Similarity=0.780 Sum_probs=225.5
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 468 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 468 (719)
...|+++.|++..++.+.+.+.+ ...+..+..++...++|++|+||||||||++++++|++++.+|+.++++++...|+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 46799999999999999998876 45667777888888999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc
Q 005014 469 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPA 548 (719)
Q Consensus 469 g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~a 548 (719)
|.....++.+|+.|+...||||||||+|.++.+|+...+.......+++++||.+||++....+++||+|||+|+.||||
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999999887643333445678999999999999988899999999999999999
Q ss_pred cCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005014 549 LLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERR 628 (719)
Q Consensus 549 llrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~ 628 (719)
++||||||+.|+|++|+.++|.+||+.++++.++..++|+..+|+.+.||||+||.++|++|+..|.++.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~---------- 376 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN---------- 376 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred hcCCCcccccccccccccccHHHHHHHHhhcCC
Q 005014 629 RSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 661 (719)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~ 661 (719)
...|+++||++|+..+.+
T Consensus 377 ---------------~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 ---------------KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ---------------CCcccHHHHHHHHHHHhc
Confidence 237999999999876643
No 47
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1e-35 Score=320.36 Aligned_cols=246 Identities=43% Similarity=0.727 Sum_probs=224.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|+||||++.++++|++.+.+|+.+|++|+.+|+.+++++||+||||||||++++++|++++..++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
++.|+.+..++.+|..+....|+||||||+|.++.++.... +....+++.++++.++++....++.||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999987653221 223456778888889988777889999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
|+++.|+|||++.|+++.|+.++|..|++.++.++.+..++++..++..++||+++||..+|.+|++.++++..
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~------ 371 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR------ 371 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999988899999999999999999999999999999887642
Q ss_pred cchhhHhHhhccccchHHHHHhhccC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
..++.+||..|+..+
T Consensus 372 -----------~~i~~~df~~A~~~v 386 (398)
T PTZ00454 372 -----------YVILPKDFEKGYKTV 386 (398)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 357888999988765
No 48
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-36 Score=293.84 Aligned_cols=228 Identities=39% Similarity=0.696 Sum_probs=209.3
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
.-+++.|+|+.|++.+++.|.+.+.+|+++|++|.. ...|.++||||||||||||.||+++|.+.+..|+.|+.+++++
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 347899999999999999999999999999999975 3567889999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-CCcEEEEEecCCCCCCCH
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDP 271 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~-~~~vivI~atn~~~~ld~ 271 (719)
+|.|+++..++.+|+.|+.+.|+||||||||.++..++.+.++..+|+-..++-.|.+... ...|+|+|+||-|+.+|.
T Consensus 205 KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 9999999999999999999999999999999999999888888889999999888887654 458999999999999999
Q ss_pred HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhc
Q 005014 272 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 343 (719)
Q Consensus 272 al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 343 (719)
++|| ||+..|++|.|+...|..+++.|+...+.. .+.|+..+++.|+||+|+|+..+++.+.++-+++..
T Consensus 285 AIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 285 AIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 9999 999999999999999999999998765533 456899999999999999999999999888777654
No 49
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.5e-36 Score=352.77 Aligned_cols=198 Identities=21% Similarity=0.352 Sum_probs=170.0
Q ss_pred CCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhc----------cC------------
Q 005014 412 PVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW----------FG------------ 469 (719)
Q Consensus 412 ~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~----------~g------------ 469 (719)
|...+....++|+.+++|+||+||||||||+||||+|++++.+|+.|++++++++| +|
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 33445566788999999999999999999999999999999999999999998765 22
Q ss_pred -------------------Cchh--hHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC
Q 005014 470 -------------------ESEA--NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 528 (719)
Q Consensus 470 -------------------~se~--~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~ 528 (719)
+++. .++.+|+.|++.+||||||||||+++.+. .....+++||++||+..
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccc
Confidence 2223 38899999999999999999999997641 11124899999999874
Q ss_pred ---CCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHh--ccCCCCCc-cCHHHHHHHccCCCHHH
Q 005014 529 ---AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL--RKSPVSKD-VDLRALAKYTQGFSGAD 602 (719)
Q Consensus 529 ---~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~--~~~~~~~~-~d~~~la~~~~~~sg~d 602 (719)
...+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++...+ ++.++..+ +|+..+|+.|.||||||
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 4568999999999999999999999999999999999999999988654 45566543 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 005014 603 ITEICQRACKYAIREN 618 (719)
Q Consensus 603 i~~~~~~A~~~a~~~~ 618 (719)
|+++|++|++.|+++.
T Consensus 1846 LanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1846 LVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999875
No 50
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=345.37 Aligned_cols=265 Identities=38% Similarity=0.694 Sum_probs=227.1
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE 462 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~ 462 (719)
..+.|+++||+++++..|++++..|+.+|+.|.++++.+++|+||+||||||||+.|+++|..+ +..|+.-++++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 4689999999999999999999999999999999999999999999999999999999999987 34577778999
Q ss_pred hhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005014 463 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 542 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~ 542 (719)
.+++|+|+.|+.++.+|+.|+...|+|+||||||.|++.|.... ......++++||..|||+...+.|+||+|||||
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH---HHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 99999999999999999999999999999999999999996542 345678999999999999999999999999999
Q ss_pred CCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCC-CCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005014 543 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 621 (719)
Q Consensus 543 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~-~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~ 621 (719)
+.+|||+.||||||+.+|||+|+.++|..|+..+.++-.- ....-+..+|+.+.||-|+||+.+|.+|++.++++....
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 9999999999999999999999999999999999877541 123347789999999999999999999999999886432
Q ss_pred HHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCC
Q 005014 622 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVS 664 (719)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~ 664 (719)
.... . .... .......|+.+||..|+....|+..
T Consensus 497 ~y~s------~-~kl~--~d~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 497 IYSS------S-DKLL--IDVALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred eecc------c-cccc--ccchhhhhhhHhhhhhhhccCCCCC
Confidence 1100 0 0000 0111234888888888887766544
No 51
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=329.95 Aligned_cols=242 Identities=44% Similarity=0.765 Sum_probs=221.4
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhc
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 194 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~ 194 (719)
..++|.|+.|+++++++|.|++.+ |++|+.|..+|...|+|+||+||||||||.||+|+|++.+.+|+.++++++...+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 358999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC----CchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCC
Q 005014 195 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK----THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 270 (719)
Q Consensus 195 ~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~----~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld 270 (719)
.|....+++.+|+.++.+.|||+||||||.+...+++ .........++||+..||++.....|+|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9988999999999999999999999999999988842 223344567899999999999998999999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
++|+|+|||++.|.++.|+..+|.+|++.|.+...+. ++.++..+|..|+||+|+||..+|.+|++.+.++...
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~----- 539 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR----- 539 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC-----
Confidence 9999999999999999999999999999999998885 7788999999999999999999999999998886543
Q ss_pred cchhhHhHhhccccchHHHHHhhcc
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGT 374 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~ 374 (719)
.+...++..|+..
T Consensus 540 ------------~i~~~~~~~a~~R 552 (774)
T KOG0731|consen 540 ------------EIGTKDLEYAIER 552 (774)
T ss_pred ------------ccchhhHHHHHHH
Confidence 3556667766653
No 52
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=300.23 Aligned_cols=229 Identities=45% Similarity=0.754 Sum_probs=213.2
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhC-CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~-~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
-.++|+||||++..++++++.+.+|+++|++|...+ +.+++||||+||||||||++|+++|++.++.|+.|..+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 357899999999999999999999999999996443 4688999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCc--EEEEEecCCCCCCCH
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH--VIVIGATNRPNSIDP 271 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~--vivI~atn~~~~ld~ 271 (719)
|.|+.++.++.+|-.|..-+|++|||||+|.++..++....+..+.+-.++..+-|++..+.+ |+|+||||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999888666667777888899999999887654 999999999999999
Q ss_pred HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccc
Q 005014 272 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDV 345 (719)
Q Consensus 272 al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~ 345 (719)
++.| |+.+.+.++.|+..+|..||+..+++..+.+++|+..+|..|.||+|+||..+|+.|++..++..+..
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 9999 99999999999999999999999999999999999999999999999999999999999888876543
No 53
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.9e-34 Score=336.51 Aligned_cols=266 Identities=50% Similarity=0.850 Sum_probs=236.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
.+.++|++|+|++..++.|++.+.+|+.+|++++.+++.+++++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC-chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHH
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 272 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~-~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~a 272 (719)
|.|+++..++.+|+.++...||||||||+|.+++.++.. .....++++++|+..|+++....+++||+|||+|+.+|++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 999999999999999999999999999999999877543 2345678999999999998888899999999999999999
Q ss_pred hhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccccc-c
Q 005014 273 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED-E 351 (719)
Q Consensus 273 l~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~-~ 351 (719)
++|+|||++.++++.|+.++|.+||+.+.+++++..++++..+++.|+||+|+|+..+|++|++.++++......... .
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~ 686 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE 686 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 999999999999999999999999999999999988999999999999999999999999999998887543221000 0
Q ss_pred hhhHhHhhccccchHHHHHhhccCCCCc
Q 005014 352 TIDAEILNSMAVTDEHFKTALGTSNPSA 379 (719)
Q Consensus 352 ~~~~~~~~~~~v~~~~~~~al~~~~ps~ 379 (719)
....+......++.+||..|+...+|+.
T Consensus 687 ~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 687 VGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred cccccccccCcccHHHHHHHHHHcCCCC
Confidence 0000111235689999999999988774
No 54
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.2e-34 Score=293.81 Aligned_cols=190 Identities=22% Similarity=0.276 Sum_probs=161.8
Q ss_pred hcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHh-----CCCEEEEEeccc
Q 005014 422 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ-----SAPCVLFFDELD 496 (719)
Q Consensus 422 ~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~-----~~p~il~iDEid 496 (719)
.++++|.+++||||||||||++|+++|++++.+|+.++++++.++|+|++|+++|.+|+.|+. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 578999999999999999999999999999999999999999999999999999999999975 469999999999
Q ss_pred hhhcccCCCCCCCCCchHHHH-HHHHHHhcCC------------CCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCC
Q 005014 497 SIATQRGSSVGDAGGAADRVL-NQLLTEMDGM------------SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 563 (719)
Q Consensus 497 ~l~~~r~~~~~~~~~~~~~~~-~~ll~~ld~~------------~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~ 563 (719)
+++++|+.. ...+..+++ .+||+.||+. ....+|+||+|||+|+.|||||+||||||+.+ ..
T Consensus 223 A~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l 297 (413)
T PLN00020 223 AGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA 297 (413)
T ss_pred hcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC
Confidence 999998632 233445665 8999999874 23567999999999999999999999999864 58
Q ss_pred CCHHHHHHHHHHHhccCCCCCccCHHHHHHHccC----CCHHHHHHHHHHHHHHHHHH
Q 005014 564 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG----FSGADITEICQRACKYAIRE 617 (719)
Q Consensus 564 p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~----~sg~di~~~~~~A~~~a~~~ 617 (719)
|+.++|..||+.++++..++ ..|+..|+..+.| |+||--..+..++...-+.+
T Consensus 298 Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998776 5778888877655 67766566666665554443
No 55
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.5e-34 Score=309.72 Aligned_cols=251 Identities=50% Similarity=0.824 Sum_probs=225.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|++|+|+++++++|++.+.+|+.+|+.|+.+|+.++++|||+||||||||++|+++|.+++.+++.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
.+.|+.+..++.+|+.+....|++|||||+|.++..+.... .....+.+.+++..++++....++.||+|||.++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999987654322 122345566777778887777789999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
|+++.|++||+..|++++|+.++|.+||+.+++++.+..+.++..++..|+||+++|+..+|++|++.++++..
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~------ 357 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR------ 357 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999998888888999999999999999999999999998887532
Q ss_pred cchhhHhHhhccccchHHHHHhhccCCCCcc
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTSNPSAL 380 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 380 (719)
..++.+||..|+..+.++..
T Consensus 358 -----------~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 358 -----------TEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred -----------CCcCHHHHHHHHHHHhcccc
Confidence 34788999999988876543
No 56
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=5.5e-33 Score=324.45 Aligned_cols=437 Identities=23% Similarity=0.358 Sum_probs=299.8
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEe
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 186 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v~ 186 (719)
=.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3577899999998887766643 234579999999999999999999987 67788999
Q ss_pred chhhh--hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecC
Q 005014 187 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 264 (719)
Q Consensus 187 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn 264 (719)
+..+. .++.|+.+.+++.+|+.+....++||||||+|.+...+....+..+ ..+.|...+ .++.+.+||+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~--~~~~L~~~l----~~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD--ASNLLKPAL----SSGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH--HHHHHHHHH----hCCCeEEEEecC
Confidence 88887 4788999999999999998778999999999999876543222221 122233332 357899999998
Q ss_pred CCC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCC----CC-CCcccHHHHHHHhCCCcccc-----HHH
Q 005014 265 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM----KL-SDDVDLERIAKDTHGYVGAD-----LAA 329 (719)
Q Consensus 265 ~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~----~l-~~~~~l~~la~~t~g~~~~d-----l~~ 329 (719)
..+ ..|+++.| ||. .|.++.|+.+++.+||+.....+ .+ -.+..+..++..++.|.+.. ...
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 632 56999998 895 79999999999999998654432 11 23345777888888876543 234
Q ss_pred HHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccCCCcccc--------------c
Q 005014 330 LCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWED--------------I 395 (719)
Q Consensus 330 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~--------------i 395 (719)
++.+++....-.. . ......++.+++..++..... ++...+.+++ +
T Consensus 397 lld~a~a~~~~~~-~------------~~~~~~v~~~~i~~~i~~~tg-------iP~~~~~~~~~~~l~~l~~~l~~~v 456 (731)
T TIGR02639 397 VIDEAGASFRLRP-K------------AKKKANVSVKDIENVVAKMAH-------IPVKTVSVDDREKLKNLEKNLKAKI 456 (731)
T ss_pred HHHHhhhhhhcCc-c------------cccccccCHHHHHHHHHHHhC-------CChhhhhhHHHHHHHHHHHHHhcce
Confidence 4554432110000 0 001234677777777655321 1111233333 4
Q ss_pred cccHHHHHHhhhccccCCCChhhhhhhcCC----CCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh-----h
Q 005014 396 GGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-----M 466 (719)
Q Consensus 396 ~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-----~ 466 (719)
.|++.+++.+.+.+.. .+.|+. |...+||+||||||||++|+++|..++.+++.++++++.. +
T Consensus 457 ~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 457 FGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred eCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHH
Confidence 4555555555444322 122332 2234899999999999999999999999999999988643 2
Q ss_pred ccCCchh-----hHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC---------CCCc
Q 005014 467 WFGESEA-----NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKT 532 (719)
Q Consensus 467 ~~g~se~-----~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~ 532 (719)
++|.... ..+.+.+..+..+.+|+||||||.+. ..+.+.||+.||... +..+
T Consensus 529 lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~--------------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH--------------PDIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred HhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC--------------HHHHHHHHHhhccCeeecCCCcccCCCC
Confidence 2332211 12345566677888999999999862 457888999988641 2357
Q ss_pred EEEEEecCCCC-------------------------CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccC-------
Q 005014 533 VFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS------- 580 (719)
Q Consensus 533 v~vi~atn~~~-------------------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~------- 580 (719)
.+||+|||... .+.|.|+. |||.+|.|.+++.++...|++..+++.
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~ 672 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEK 672 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999998731 25677776 999999999999999999999888531
Q ss_pred CCCCccC---HHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHH
Q 005014 581 PVSKDVD---LRALAKY--TQGFSGADITEICQRACKYAIRENI 619 (719)
Q Consensus 581 ~~~~~~d---~~~la~~--~~~~sg~di~~~~~~A~~~a~~~~~ 619 (719)
++.-.++ ++.|++. ...|..+.|+.+++.-...++.+.+
T Consensus 673 ~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 673 NIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred CCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 2222223 4455554 2346678888888888777776654
No 57
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.2e-34 Score=308.55 Aligned_cols=246 Identities=48% Similarity=0.783 Sum_probs=221.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..+..+|+||||+++++++|++.+.+|+.+|++|+.+|+.++.++||+||||||||++|+++|++++..++.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
.+.|+....++.+|+.+....|+||||||||.++.++.... .....+.+.+++..++++....++.||++||.++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999987654322 122245556778888888777789999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
|+++.|++||++.|+|+.|+.++|.+||+.++.++.+..++++..++..++||+++|+..+|.+|++.++++..
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r------ 409 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR------ 409 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC------
Confidence 99999999999999999999999999999999999988899999999999999999999999999999887642
Q ss_pred cchhhHhHhhccccchHHHHHhhccC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
..++.+||..|+..+
T Consensus 410 -----------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 410 -----------MKVTQADFRKAKEKV 424 (438)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 347888998888765
No 58
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=318.43 Aligned_cols=249 Identities=51% Similarity=0.839 Sum_probs=231.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
.+.++|+++||++..++.+++.+.+|+.+|+.|...++.++.++||+||||||||+||+++|.+++.+|+.+.++++.++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHh
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 273 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al 273 (719)
|.|+++++++.+|..|+...||||||||+|.+++.++...+....+++.+|+..++++....+|+||++||.|+.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999999876666666899999999999999999999999999999999999
Q ss_pred hccCCCceEEEeCCCChHHHHHHHHHHhcCCC--CCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccc
Q 005014 274 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 351 (719)
Q Consensus 274 ~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~--l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 351 (719)
.|+|||+..+++++|+..+|.+|++.+++... +..++++..+++.++||+++|+..+|++|.+.++++..
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------- 467 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------- 467 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--------
Confidence 99999999999999999999999999998544 45788999999999999999999999999998887653
Q ss_pred hhhHhHhhccccchHHHHHhhccCCCC
Q 005014 352 TIDAEILNSMAVTDEHFKTALGTSNPS 378 (719)
Q Consensus 352 ~~~~~~~~~~~v~~~~~~~al~~~~ps 378 (719)
...++.+||..|+....|+
T Consensus 468 --------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 468 --------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred --------cCCccHHHHHHHHHhcCCC
Confidence 2357889999999887766
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-32 Score=314.07 Aligned_cols=447 Identities=21% Similarity=0.313 Sum_probs=295.5
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEec
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 187 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v~~ 187 (719)
.++.+.|-++.+.++.+.+.. ....++||+||||||||++++.+|..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 456789999988888876654 234578999999999999999999864 445566655
Q ss_pred hhhh--hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCC
Q 005014 188 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 265 (719)
Q Consensus 188 ~~l~--~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~ 265 (719)
..+. .++.|+.+.+++.+|..+....++||||||+|.++..+....+..+ +.+++..+..++.+.+||+|+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d------~~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD------AANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH------HHHHHHHHHhCCCeEEEecCCh
Confidence 5554 3567889999999999988888899999999999876643222211 1223333345678999999997
Q ss_pred CC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCccc-----HHHHHHHhCCCcc-----ccHHHH
Q 005014 266 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVD-----LERIAKDTHGYVG-----ADLAAL 330 (719)
Q Consensus 266 ~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~-----l~~la~~t~g~~~-----~dl~~l 330 (719)
++ ..|++|.| ||. .|.++.|+.+++..||+.+..++....++. +...+..+..|.. .....+
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidl 401 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHH
Confidence 64 46999998 994 799999999999999997766555443333 3444444555433 345566
Q ss_pred HHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCC--c-ccc----eeeccCCCccccccccHHHHH
Q 005014 331 CTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPS--A-LRE----TVVEVPNVNWEDIGGLENVKR 403 (719)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps--~-~~~----~~~~~~~~~~~~i~g~~~~k~ 403 (719)
+.+|+....- ... . .....++..++...+...... . +.. ........--..+.|++++++
T Consensus 402 ldea~a~~~~--~~~---~--------~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~ 468 (758)
T PRK11034 402 IDEAGARARL--MPV---S--------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIE 468 (758)
T ss_pred HHHHHHhhcc--Ccc---c--------ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHH
Confidence 7766542210 000 0 001124455555544332210 0 000 000001111234678888888
Q ss_pred HhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh-----hhccCCchhh----
Q 005014 404 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----TMWFGESEAN---- 474 (719)
Q Consensus 404 ~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-----~~~~g~se~~---- 474 (719)
.|.+.+...... +.. ..+|...+||+||||||||++|+++|..++.+|+.++++++. ++++|.....
T Consensus 469 ~l~~~i~~~~~g---l~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~ 544 (758)
T PRK11034 469 ALTEAIKMSRAG---LGH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544 (758)
T ss_pred HHHHHHHHHhcc---ccC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccc
Confidence 888776532110 000 112334599999999999999999999999999999998764 3334432211
Q ss_pred -HHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC---------CCCcEEEEEecCCC--
Q 005014 475 -VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-- 542 (719)
Q Consensus 475 -i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~atn~~-- 542 (719)
-..+.+..+..+.+|+||||||.+. ..+.+.||+.||... +..+++||+|||.-
T Consensus 545 ~~g~L~~~v~~~p~sVlllDEieka~--------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~ 610 (758)
T PRK11034 545 QGGLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_pred ccchHHHHHHhCCCcEEEeccHhhhh--------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence 1234455566777999999999963 458899999998431 23578999999932
Q ss_pred -----------------------CCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhcc-------CCCCCccC---HH
Q 005014 543 -----------------------DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-------SPVSKDVD---LR 589 (719)
Q Consensus 543 -----------------------~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~~~~d---~~ 589 (719)
..+.|.|+. |+|.+|.|++++.++...|+..++.+ .++.-.++ ++
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~ 688 (758)
T PRK11034 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARD 688 (758)
T ss_pred HHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHH
Confidence 135678887 99999999999999999999877642 23333333 44
Q ss_pred HHHHHc--cCCCHHHHHHHHHHHHHHHHHHHH
Q 005014 590 ALAKYT--QGFSGADITEICQRACKYAIRENI 619 (719)
Q Consensus 590 ~la~~~--~~~sg~di~~~~~~A~~~a~~~~~ 619 (719)
.|++.. ..|-.+.|+.+++.-....+.+.+
T Consensus 689 ~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 689 WLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 455433 235568888888888777776654
No 60
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-33 Score=306.67 Aligned_cols=230 Identities=47% Similarity=0.788 Sum_probs=215.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
...++|.|+.|.++.++.+.++++. +++|..|..+|..-|+|+||+||||||||+||+++|++.+.+|+.++++++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3468999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCC
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 270 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld 270 (719)
++|...+++|.+|.+++.+.|||+||||||++...++.. ..+.....++||+..||++..+..|+++++||+|+-+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999888532 22333457899999999999888999999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcc
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 344 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 344 (719)
++|.|+|||+++|.++.||...|.+|++.|.++.++..++++..+|+.|.||+|+|+..++.+|++.+.++...
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877643
No 61
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9.4e-32 Score=295.38 Aligned_cols=242 Identities=25% Similarity=0.412 Sum_probs=209.4
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhc
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 194 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~ 194 (719)
+..+|++|||++..++.+.+.... ++....++|+.++++|||+||||||||++|+++|++++.+++.+++..+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 356899999999999888765432 23445678999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC-CchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHh
Q 005014 195 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 273 (719)
Q Consensus 195 ~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~-~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al 273 (719)
.|+++.+++.+|+.+....||||||||||.++..... ..+....+++.+++.+|+. ...+|+||+|||.++.+|+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999998875332 2344567888899988875 345799999999999999999
Q ss_pred hccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC--CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccc
Q 005014 274 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS--DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 351 (719)
Q Consensus 274 ~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~--~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 351 (719)
.|+|||++.++++.|+.++|.+|++.++++.... .+.++..+++.|+||+|+||..+|.+|...+..+.
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 9999999999999999999999999998876432 46789999999999999999999999987776432
Q ss_pred hhhHhHhhccccchHHHHHhhccCCCCc
Q 005014 352 TIDAEILNSMAVTDEHFKTALGTSNPSA 379 (719)
Q Consensus 352 ~~~~~~~~~~~v~~~~~~~al~~~~ps~ 379 (719)
..++.+||..++..+.|.+
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCc
Confidence 3478899999999988864
No 62
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3.4e-31 Score=286.44 Aligned_cols=245 Identities=53% Similarity=0.865 Sum_probs=217.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..+.+.|++++|+++++++|++.+.+|+.+|+.|..+|+.+++++||+||||||||++|+++|+.++..++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
.+.|+....++.+|+.+....|++|||||+|.+...+.... +....+.+.+++..++++....++.||+|||.++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 99998888999999999999999999999999986654322 122344556677777777667789999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
|+++++++||++.+.++.|+.++|.+|++.+...+.+..+.++..++..++||+++|+..+|.+|++.++++..
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~------ 348 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER------ 348 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999999888888888999999999999999999999999998887532
Q ss_pred cchhhHhHhhccccchHHHHHhhcc
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGT 374 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~ 374 (719)
..++.+||..|+..
T Consensus 349 -----------~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 349 -----------DYVTMDDFIKAVEK 362 (364)
T ss_pred -----------CccCHHHHHHHHHH
Confidence 34788888888764
No 63
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.2e-32 Score=269.23 Aligned_cols=229 Identities=44% Similarity=0.762 Sum_probs=207.0
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
...+++|+.++|+-.++..+++.+++|+.+|++|.++|+.+|++++||||||+|||.+|+++|..+++.|+.+..+.+.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHH---HHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ---LLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~---L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
++.|++...+++.|..|+...||+||+||||++...+........+.+..+ |++.|+++..-.+|-+|.|||+|+.+
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 999999999999999999999999999999999987643333333444444 45556666677899999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHh
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 341 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 341 (719)
+|+|.|+||+++.+.+|.|++..|..|++.|...+......+.+.+.+..+||.++|+...|+++.+.+++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 999999999999999999999999999999988888888888999999999999999999999998766544
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.98 E-value=3.3e-31 Score=297.40 Aligned_cols=244 Identities=45% Similarity=0.756 Sum_probs=219.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
.+.++|+|++|+++.++++++++.. +++|+.+..+|..+++++||+||||||||++++++|++++.+++.++++++...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 4578999999999999999999887 899999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCC
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 270 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld 270 (719)
+.|.....++.+|+.+....|+||||||+|.+..+++.. ......+++++|+..|+++.....++||++||.++.+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999998776542 12334577889999999988888999999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccccc
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 350 (719)
++++|++||++.|+++.|+.++|.+|++.+++...+..+.++..++..+.||+++|+..+|++|+..+.++.
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~-------- 279 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN-------- 279 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999988877778889999999999999999999999987765532
Q ss_pred chhhHhHhhccccchHHHHHhhccC
Q 005014 351 ETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
...++.+++..|+...
T Consensus 280 ---------~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 280 ---------KTEITMNDIEEAIDRV 295 (495)
T ss_pred ---------CCCCCHHHHHHHHHHH
Confidence 1346778888887755
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.3e-30 Score=285.40 Aligned_cols=221 Identities=43% Similarity=0.712 Sum_probs=194.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe----------E
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------F 182 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------~ 182 (719)
..++++|+||||+++++++|++.+.+|+.+|++|..+|+.+++++|||||||||||++++++|++++.. |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 457889999999999999999999999999999999999999999999999999999999999998543 5
Q ss_pred EEEechhhhhhcccchHHHHHHHHHHHHhc----CCcEEEEccccccCCCCCCC-chHHHHHHHHHHHHHhhcccCCCcE
Q 005014 183 FCINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHV 257 (719)
Q Consensus 183 i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~iL~iDEid~l~~~~~~~-~~~~~~~v~~~L~~~l~~~~~~~~v 257 (719)
+.+.++++.+++.|+++..++.+|+.+... .|+||||||+|.++..++.. .++.+++++.+|++.|+++....++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 677788899999999999999999988763 69999999999999876543 3456788899999999999888899
Q ss_pred EEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC-CCCCCcccHHHHHHHhCCCccccHHHHHHHHHH
Q 005014 258 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-MKLSDDVDLERIAKDTHGYVGADLAALCTEAAL 336 (719)
Q Consensus 258 ivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~-~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 336 (719)
+||+|||+++.+|++++|+|||+.+|+++.|+.++|.+||+.++.. +++ ...+..+.|++++++..++.++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l------~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL------DADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc------hHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988753 333 222455799999999999998865
Q ss_pred HHH
Q 005014 337 QCI 339 (719)
Q Consensus 337 ~~~ 339 (719)
..+
T Consensus 409 ~~~ 411 (512)
T TIGR03689 409 HLY 411 (512)
T ss_pred HHh
Confidence 443
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=3.2e-30 Score=291.92 Aligned_cols=243 Identities=43% Similarity=0.735 Sum_probs=215.6
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhc
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 194 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~ 194 (719)
..++|+|++|+++.++.+.+++.. +++|+.+..+|...++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 357899999999999999999877 8899999999999999999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCH
Q 005014 195 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 271 (719)
Q Consensus 195 ~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~ 271 (719)
.|.....++.+|+.+....||||||||+|.+...++.. .......++.+|+..++++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888899999999999999999999999998765422 223345677889999999888889999999999999999
Q ss_pred HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccc
Q 005014 272 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 351 (719)
Q Consensus 272 al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 351 (719)
+++|++||++.+.++.|+.++|.+||+.+++...+..+.++..++..+.||+++||..++++|+..+.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-------- 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-------- 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999887777788899999999999999999999999887765432
Q ss_pred hhhHhHhhccccchHHHHHhhccC
Q 005014 352 TIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 352 ~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
..++.+++..|+..+
T Consensus 409 ---------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ---------ATITMKEIDTAIDRV 423 (638)
T ss_pred ---------CCcCHHHHHHHHHHH
Confidence 236777888877654
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=3.5e-28 Score=285.38 Aligned_cols=445 Identities=20% Similarity=0.296 Sum_probs=280.6
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC----------CeEEEE
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCI 185 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~----------~~~i~v 185 (719)
+=.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+. ..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34678899999987766665533 2334799999999999999999999862 446666
Q ss_pred echhhh--hhcccchHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEe
Q 005014 186 NGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 262 (719)
Q Consensus 186 ~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~a 262 (719)
+...+. ..+.|+.+.+++.+|+.+.. ..++||||||+|.+...++... ..+ .. +++.....++.+.+|||
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d--~~----n~Lkp~l~~G~l~~Iga 322 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGD--AA----NLLKPALARGELRTIAA 322 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-ccc--HH----HHhhHHhhCCCeEEEEe
Confidence 666655 36788999999999999865 4678999999999987653221 111 11 22333345678999999
Q ss_pred cCCCC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCC-----CCcccHHHHHHHhCCCcccc-----H
Q 005014 263 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-----SDDVDLERIAKDTHGYVGAD-----L 327 (719)
Q Consensus 263 tn~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l-----~~~~~l~~la~~t~g~~~~d-----l 327 (719)
|+..+ .+|++|+| || ..|.++.|+.+++..||+.+.+.+.. ..+..+..++..+++|.... .
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKA 399 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKA 399 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHH
Confidence 98643 47999999 99 58999999999999998766544321 13445778888888886432 2
Q ss_pred HHHHHHHHHHH-HHhhccccc-----------------c--------ccc-h---hh-------Hh-------Hhhc---
Q 005014 328 AALCTEAALQC-IREKMDVID-----------------L--------EDE-T---ID-------AE-------ILNS--- 360 (719)
Q Consensus 328 ~~l~~~a~~~~-~~~~~~~~~-----------------~--------~~~-~---~~-------~~-------~~~~--- 360 (719)
..++.+|+... +........ . ... . .. .+ +...
T Consensus 400 Idlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (852)
T TIGR03345 400 VSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKEL 479 (852)
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443211 110000000 0 000 0 00 00 0000
Q ss_pred -----------------------------------------------cccchHHHHHhhccCCCCcccceeeccCC--Cc
Q 005014 361 -----------------------------------------------MAVTDEHFKTALGTSNPSALRETVVEVPN--VN 391 (719)
Q Consensus 361 -----------------------------------------------~~v~~~~~~~al~~~~ps~~~~~~~~~~~--~~ 391 (719)
..++..++...+... ..+|. +.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~---------tgip~~~~~ 550 (852)
T TIGR03345 480 VEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADW---------TGIPVGRMV 550 (852)
T ss_pred HHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHH---------HCCCchhhc
Confidence 001111111111100 00111 10
Q ss_pred --------------cccccccHHHHHHhhhccccCCCChhhhhhhcCC---CCcc-eeeecCCCCchhHHHHHHHHHh--
Q 005014 392 --------------WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS---PSKG-VLFYGPPGCGKTLLAKAIANEC-- 451 (719)
Q Consensus 392 --------------~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~---~~~g-ill~GppGtGKT~la~~la~~~-- 451 (719)
-..+.|++...+.+.+.+... +.|+. .|.| +||+||||||||.+|+++|..+
T Consensus 551 ~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 551 RDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred hhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 123456665555555544321 11222 2333 8999999999999999999988
Q ss_pred -CCeEEEEeccchhh------------hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHH
Q 005014 452 -QANFISVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 518 (719)
Q Consensus 452 -~~~~i~v~~~~l~~------------~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~ 518 (719)
...++.++++++.. .|+|..+. +.+.+..++.+++||+||||+.. ...+.+
T Consensus 623 ~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka--------------~~~v~~ 686 (852)
T TIGR03345 623 GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA--------------HPDVLE 686 (852)
T ss_pred CCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc--------------CHHHHH
Confidence 45789999887643 24544332 23456667788899999999864 246788
Q ss_pred HHHHHhcCCC---------CCCcEEEEEecCCCC-----------------------------CCCcccCCCCCcceEEE
Q 005014 519 QLLTEMDGMS---------AKKTVFIIGATNRPD-----------------------------IIDPALLRPGRLDQLIY 560 (719)
Q Consensus 519 ~ll~~ld~~~---------~~~~v~vi~atn~~~-----------------------------~ld~allrpgRf~~~i~ 560 (719)
.|++.||... +..+.+||+|||... .+.|+|+. |++ +|.
T Consensus 687 ~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~ 763 (852)
T TIGR03345 687 LFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIP 763 (852)
T ss_pred HHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEE
Confidence 8888887542 235789999999521 25577887 998 899
Q ss_pred eCCCCHHHHHHHHHHHhccC--------CCCCccC---HHHHHHHccC--CCHHHHHHHHHHHHHHHHHHHH
Q 005014 561 IPLPDEESRLQIFKACLRKS--------PVSKDVD---LRALAKYTQG--FSGADITEICQRACKYAIRENI 619 (719)
Q Consensus 561 ~~~p~~~~r~~Il~~~~~~~--------~~~~~~d---~~~la~~~~~--~sg~di~~~~~~A~~~a~~~~~ 619 (719)
|.+++.++...|++..+... ++.-.++ ++.|++...+ |-.+.++++++.-...++.+.+
T Consensus 764 F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 764 YLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877431 3322333 4456655432 4578888888887777776654
No 68
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=1.1e-27 Score=282.92 Aligned_cols=452 Identities=23% Similarity=0.350 Sum_probs=291.0
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEec
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 187 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v~~ 187 (719)
.++++.|.+++++++.+++.. ....+++|+||||||||++++.+|..+ +..++.++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 477899999999998887754 234589999999999999999999986 367888998
Q ss_pred hhhh--hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCC
Q 005014 188 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 265 (719)
Q Consensus 188 ~~l~--~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~ 265 (719)
..+. .++.|+.+.+++.+|+.+....++||||||+|.+...+....+ + . ..+++.....++.+.+||+|+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~--~----~a~lLkp~l~rg~l~~IgaTt~ 316 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-I--D----AANILKPALARGELQCIGATTL 316 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-c--c----HHHHhHHHHhCCCcEEEEeCCH
Confidence 8776 4678999999999999998888899999999999876543221 1 1 1122333334678899999986
Q ss_pred CC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhc------CCCCCCcccHHHHHHHhCCCccc-----cHHH
Q 005014 266 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK------NMKLSDDVDLERIAKDTHGYVGA-----DLAA 329 (719)
Q Consensus 266 ~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~------~~~l~~~~~l~~la~~t~g~~~~-----dl~~ 329 (719)
.+ ..|+++.+ ||. .|.++.|+.++...|++.... ++.+ .+..+..++..+.+|.+. ....
T Consensus 317 ~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i-~deal~~i~~ls~~yi~~r~lPdkaid 392 (821)
T CHL00095 317 DEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSI-SDKALEAAAKLSDQYIADRFLPDKAID 392 (821)
T ss_pred HHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCccccCchHHHH
Confidence 53 46899998 884 589999999999888875432 2222 334477788888888753 1234
Q ss_pred HHHHHHHHH-HHhhcccccc------------------ccch-------------hhH-------hHh-------hcccc
Q 005014 330 LCTEAALQC-IREKMDVIDL------------------EDET-------------IDA-------EIL-------NSMAV 363 (719)
Q Consensus 330 l~~~a~~~~-~~~~~~~~~~------------------~~~~-------------~~~-------~~~-------~~~~v 363 (719)
++.+|+... +......... .+.. +.. ... ....+
T Consensus 393 lld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 472 (821)
T CHL00095 393 LLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVV 472 (821)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc
Confidence 444443321 1100000000 0000 000 000 00224
Q ss_pred chHHHHHhhccCCCC--c-ccc----eeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcC----CCCcceee
Q 005014 364 TDEHFKTALGTSNPS--A-LRE----TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLF 432 (719)
Q Consensus 364 ~~~~~~~al~~~~ps--~-~~~----~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gill 432 (719)
+.+++...+...... . +.. ........--+.+.|++.+.+.+...+... +.|+ +|...+||
T Consensus 473 ~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf 544 (821)
T CHL00095 473 TEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLF 544 (821)
T ss_pred CHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEE
Confidence 444444443322110 0 000 000000011134667777777776655321 1222 22234899
Q ss_pred ecCCCCchhHHHHHHHHHh---CCeEEEEeccchh-----hh-------ccCCchhhHHHHHHHHHhCCCEEEEEeccch
Q 005014 433 YGPPGCGKTLLAKAIANEC---QANFISVKGPELL-----TM-------WFGESEANVREIFDKARQSAPCVLFFDELDS 497 (719)
Q Consensus 433 ~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~-----~~-------~~g~se~~i~~~f~~a~~~~p~il~iDEid~ 497 (719)
+||+|||||++|+++|..+ ..+++.++++++. ++ |+|..+ .+.+....+..+.+|++|||+|.
T Consensus 545 ~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 545 SGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred ECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhh
Confidence 9999999999999999986 3678999888763 22 333222 23566777778889999999998
Q ss_pred hhcccCCCCCCCCCchHHHHHHHHHHhcCCC---------CCCcEEEEEecCCCCC------------------------
Q 005014 498 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPDI------------------------ 544 (719)
Q Consensus 498 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~atn~~~~------------------------ 544 (719)
. ...+.+.|++.|+... +..+.+||+|||....
T Consensus 623 a--------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~ 688 (821)
T CHL00095 623 A--------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYK 688 (821)
T ss_pred C--------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHH
Confidence 5 2568899999998631 2457899999995311
Q ss_pred -------------CCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhcc-------CCCCCccC---HHHHHHHc--cCCC
Q 005014 545 -------------IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-------SPVSKDVD---LRALAKYT--QGFS 599 (719)
Q Consensus 545 -------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~~~~d---~~~la~~~--~~~s 599 (719)
+.|.|+. |+|.+|.|.+.+.++...|++..+.+ .++.-.++ .+.|++.. ..|-
T Consensus 689 ~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~G 766 (821)
T CHL00095 689 RLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYG 766 (821)
T ss_pred HHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCC
Confidence 2356776 99999999999999999999887753 22222233 34555542 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005014 600 GADITEICQRACKYAIRENI 619 (719)
Q Consensus 600 g~di~~~~~~A~~~a~~~~~ 619 (719)
.+.|+.+++.-...++.+.+
T Consensus 767 AR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 767 ARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 68888888877777766654
No 69
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=8.5e-28 Score=283.18 Aligned_cols=456 Identities=21% Similarity=0.342 Sum_probs=273.2
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEe
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 186 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v~ 186 (719)
=.++++.|.+..+.++.++++. ....+++|+||||||||++++.+|..+ +..++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3578899999987777776654 233579999999999999999999987 66778887
Q ss_pred chhhh--hhcccchHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEec
Q 005014 187 GPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 263 (719)
Q Consensus 187 ~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~at 263 (719)
...+. .++.|+.+.+++.+|+.... ..++||||||+|.+...+.... .++. .+.+.....++.+.+||+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~------~~~lkp~l~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDA------GNMLKPALARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhH------HHHhcchhhcCCCeEEEcC
Confidence 77765 45778999999999998644 5688999999999987654322 2211 1223333457789999999
Q ss_pred CCCC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCC-----cccHHHHHHHhCCCcccc-----HH
Q 005014 264 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD-----DVDLERIAKDTHGYVGAD-----LA 328 (719)
Q Consensus 264 n~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~-----~~~l~~la~~t~g~~~~d-----l~ 328 (719)
+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..++.... +..+...+..+++|.... ..
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi 391 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAI 391 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHH
Confidence 8765 47999999 996 688999999999999987765543322 223445556666665321 11
Q ss_pred HHHHHHHHH-------------HHHhhc-------cccccccc------------h--------------hhHh--Hhhc
Q 005014 329 ALCTEAALQ-------------CIREKM-------DVIDLEDE------------T--------------IDAE--ILNS 360 (719)
Q Consensus 329 ~l~~~a~~~-------------~~~~~~-------~~~~~~~~------------~--------------~~~~--~~~~ 360 (719)
.++..++.. .+.+.. .....+.. . +... ....
T Consensus 392 ~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~ 471 (857)
T PRK10865 392 DLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSG 471 (857)
T ss_pred HHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 122111100 000000 00000000 0 0000 0000
Q ss_pred ---------------------------------------------------------cccchHHHHHhhccCC--CCc-c
Q 005014 361 ---------------------------------------------------------MAVTDEHFKTALGTSN--PSA-L 380 (719)
Q Consensus 361 ---------------------------------------------------------~~v~~~~~~~al~~~~--ps~-~ 380 (719)
..++.+++...+.... |-. +
T Consensus 472 ~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~ 551 (857)
T PRK10865 472 TQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRM 551 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhh
Confidence 0011111111110000 000 0
Q ss_pred cc----eeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCC----CCcceeeecCCCCchhHHHHHHHHHh-
Q 005014 381 RE----TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANEC- 451 (719)
Q Consensus 381 ~~----~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~gill~GppGtGKT~la~~la~~~- 451 (719)
.+ ........-...+.|++.+.+.+...+... ..|+. |...++|+||||||||++|+++|..+
T Consensus 552 ~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 552 LESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred hhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 00 000000001123445555555554443211 11222 22348999999999999999999886
Q ss_pred --CCeEEEEeccchhhh-----ccCCchh-----hHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHH
Q 005014 452 --QANFISVKGPELLTM-----WFGESEA-----NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 519 (719)
Q Consensus 452 --~~~~i~v~~~~l~~~-----~~g~se~-----~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ 519 (719)
+.+++.++++++... .+|.... .-..+....+..+.+||||||++.+- ..+.+.
T Consensus 624 ~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~--------------~~v~~~ 689 (857)
T PRK10865 624 DSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH--------------PDVFNI 689 (857)
T ss_pred cCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC--------------HHHHHH
Confidence 457899998876431 2222111 11223344455566899999998752 457788
Q ss_pred HHHHhcCC--C-------CCCcEEEEEecCCC-------------------------CCCCcccCCCCCcceEEEeCCCC
Q 005014 520 LLTEMDGM--S-------AKKTVFIIGATNRP-------------------------DIIDPALLRPGRLDQLIYIPLPD 565 (719)
Q Consensus 520 ll~~ld~~--~-------~~~~v~vi~atn~~-------------------------~~ld~allrpgRf~~~i~~~~p~ 565 (719)
|++.|+.. . +..+.+||+|||.. ..+.|+|+. |+|.++.|.+++
T Consensus 690 Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~ 767 (857)
T PRK10865 690 LLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLG 767 (857)
T ss_pred HHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCC
Confidence 88888643 1 23467899999972 135578887 999999999999
Q ss_pred HHHHHHHHHHHhccC-------CCCCccCHHHHHHHc-cCCC----HHHHHHHHHHHHHHHHHHHH
Q 005014 566 EESRLQIFKACLRKS-------PVSKDVDLRALAKYT-QGFS----GADITEICQRACKYAIRENI 619 (719)
Q Consensus 566 ~~~r~~Il~~~~~~~-------~~~~~~d~~~la~~~-~~~s----g~di~~~~~~A~~~a~~~~~ 619 (719)
.+....|++.++.+. ++.-.++-+.+.... .||+ .+.|+++++.-....+.+.+
T Consensus 768 ~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 768 EQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 999999998887542 233234433333322 2444 57888888888777766654
No 70
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-29 Score=265.31 Aligned_cols=260 Identities=42% Similarity=0.662 Sum_probs=218.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
+..++.|+|++|++..++.+.+.+.+|+..|++|..+ -.+.+++||.||||+|||+|++++|.+.++.|+.+.++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 4567999999999999999999999999999999865 356789999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc--CCCcEEEEEecCCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRPNSID 270 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~--~~~~vivI~atn~~~~ld 270 (719)
+|.|+.+..++.+|+-|+..+|+|+||||+|.++.++.....+..+|+..+++-.+++.. ...+|+||||||.|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999998865555666777777665555443 345899999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCC-CCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM-KLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~-~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
.+++| ||...+++|.|+.+.|..+|+..+... ....+.++..+++.|+||++.|+.++|.+|++.-.+.......+.
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~ 382 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE 382 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh
Confidence 99999 999999999999999999999887655 333557899999999999999999999999987665543320110
Q ss_pred cchhhHhHhhccccchHHHHHhhccCCCCc
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTSNPSA 379 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps~ 379 (719)
.+. ......++..+|..++..+.|+.
T Consensus 383 --~~~--~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 383 --FID--ADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred --hcc--hhccCCCCcchHHHHHHhhcccc
Confidence 111 12345577788888888877654
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=5.4e-27 Score=277.77 Aligned_cols=456 Identities=22% Similarity=0.349 Sum_probs=283.4
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEec
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 187 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v~~ 187 (719)
.++.+.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+ +..++.++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 577899999987777776643 234578999999999999999999886 566777777
Q ss_pred hhhh--hhcccchHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecC
Q 005014 188 PEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 264 (719)
Q Consensus 188 ~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn 264 (719)
..+. .++.|+.+.+++.+|..+.. ..++||||||+|.+...+.... .. ... +.+.....++.+.+||+|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~--d~~----~~Lk~~l~~g~i~~IgaTt 310 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM--DAG----NMLKPALARGELHCIGATT 310 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh--HHH----HHhchhhhcCceEEEEeCc
Confidence 6665 46778899999999998865 4589999999999986543221 11 111 2233334567899999998
Q ss_pred CCC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-----CcccHHHHHHHhCCCccc-----cHHH
Q 005014 265 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVGA-----DLAA 329 (719)
Q Consensus 265 ~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----dl~~ 329 (719)
..+ ..|+++.| ||. .|.++.|+.+++..||+....++... .+..+...+..+++|... -...
T Consensus 311 ~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAid 387 (852)
T TIGR03346 311 LDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAID 387 (852)
T ss_pred HHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHH
Confidence 763 47999998 995 58999999999999999776655433 233467777778887653 1233
Q ss_pred HHHHHHHHH-HH------------hhcccc-------ccccc-----h---hhHh--------------Hhh--------
Q 005014 330 LCTEAALQC-IR------------EKMDVI-------DLEDE-----T---IDAE--------------ILN-------- 359 (719)
Q Consensus 330 l~~~a~~~~-~~------------~~~~~~-------~~~~~-----~---~~~~--------------~~~-------- 359 (719)
++.+|+... +. +....+ .-... . +... +..
T Consensus 388 lld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (852)
T TIGR03346 388 LIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGI 467 (852)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443211 10 000000 00000 0 0000 000
Q ss_pred ---------------------------------------------------------ccccchHHHHHhhccCC--CCc-
Q 005014 360 ---------------------------------------------------------SMAVTDEHFKTALGTSN--PSA- 379 (719)
Q Consensus 360 ---------------------------------------------------------~~~v~~~~~~~al~~~~--ps~- 379 (719)
...++.+++...+.... |..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~ 547 (852)
T TIGR03346 468 QQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSK 547 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCccc
Confidence 00011111111111100 000
Q ss_pred ccc----eeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcC----CCCcceeeecCCCCchhHHHHHHHHHh
Q 005014 380 LRE----TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANEC 451 (719)
Q Consensus 380 ~~~----~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gill~GppGtGKT~la~~la~~~ 451 (719)
+.. ........-...+.|++.+.+.+...+... ..|+ +|...+||+||||||||++|+++|..+
T Consensus 548 ~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 548 MLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred ccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 000 000000001233556655555555444321 1122 233459999999999999999999986
Q ss_pred ---CCeEEEEeccchhh-----hccCCchh-----hHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHH
Q 005014 452 ---QANFISVKGPELLT-----MWFGESEA-----NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 518 (719)
Q Consensus 452 ---~~~~i~v~~~~l~~-----~~~g~se~-----~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~ 518 (719)
+.+++.++++++.. +.+|.... ..+.+....+..+.+|+|||||+.+ ...+.+
T Consensus 620 ~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka--------------~~~v~~ 685 (852)
T TIGR03346 620 FDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA--------------HPDVFN 685 (852)
T ss_pred cCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC--------------CHHHHH
Confidence 46899999887632 22222111 1234555566677789999999975 256788
Q ss_pred HHHHHhcCCC---------CCCcEEEEEecCCCC-------------------------CCCcccCCCCCcceEEEeCCC
Q 005014 519 QLLTEMDGMS---------AKKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLP 564 (719)
Q Consensus 519 ~ll~~ld~~~---------~~~~v~vi~atn~~~-------------------------~ld~allrpgRf~~~i~~~~p 564 (719)
.||+.|+... +..+.+||+|||... .+.|.|+. |+|.++.|.++
T Consensus 686 ~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL 763 (852)
T TIGR03346 686 VLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPL 763 (852)
T ss_pred HHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCc
Confidence 8888886531 235788999999821 14467776 99999999999
Q ss_pred CHHHHHHHHHHHhcc-------CCCCCccC---HHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHH
Q 005014 565 DEESRLQIFKACLRK-------SPVSKDVD---LRALAKYTQ--GFSGADITEICQRACKYAIRENIE 620 (719)
Q Consensus 565 ~~~~r~~Il~~~~~~-------~~~~~~~d---~~~la~~~~--~~sg~di~~~~~~A~~~a~~~~~~ 620 (719)
+.+...+|+...+.. .++...++ ++.|++... .+..+.|++++++.....+.+.+-
T Consensus 764 ~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 764 GREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999877742 22222333 445555422 466799999999998888776643
No 72
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=2.7e-28 Score=279.90 Aligned_cols=243 Identities=42% Similarity=0.708 Sum_probs=216.4
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 195 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~ 195 (719)
...|+++.|++..++++.+++.+ +..|+.+..++...+++++|+||||||||+++++++++++.+++.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 34788999999999999999987 67788888888888999999999999999999999999999999999999998888
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHH
Q 005014 196 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 272 (719)
Q Consensus 196 g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~a 272 (719)
+.....++.+|+.+....||||||||+|.++.+++.. ......+++++|+..|+++.....++||++||+|+.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9889999999999999999999999999998776532 2233456888999999999888899999999999999999
Q ss_pred hhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccch
Q 005014 273 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDET 352 (719)
Q Consensus 273 l~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 352 (719)
++|++||++.+.++.|+.++|.+||+.+.++.++..++++..+++.+.||+++|+..+|++|+..+.+...
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~--------- 377 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK--------- 377 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 99999999999999999999999999999999888889999999999999999999999999988776432
Q ss_pred hhHhHhhccccchHHHHHhhccCC
Q 005014 353 IDAEILNSMAVTDEHFKTALGTSN 376 (719)
Q Consensus 353 ~~~~~~~~~~v~~~~~~~al~~~~ 376 (719)
..++..++..++..+.
T Consensus 378 --------~~i~~~d~~~a~~~v~ 393 (644)
T PRK10733 378 --------RVVSMVEFEKAKDKIM 393 (644)
T ss_pred --------CcccHHHHHHHHHHHh
Confidence 3466778877776543
No 73
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-27 Score=265.15 Aligned_cols=454 Identities=23% Similarity=0.343 Sum_probs=295.5
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEe
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 186 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v~ 186 (719)
-.++.++|-+++++++.+.+.... .++-+|+|+||+|||.++.-+|... +..++.++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 357789999999998888876532 3467889999999999999999875 34456666
Q ss_pred chhhh--hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecC
Q 005014 187 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 264 (719)
Q Consensus 187 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn 264 (719)
-..+. .+|.|+.+++++.++++.....+.||||||+|.+.......++.++ ..+++...-.++.+-+||+|.
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D------AaNiLKPaLARGeL~~IGATT 307 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD------AANLLKPALARGELRCIGATT 307 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc------hhhhhHHHHhcCCeEEEEecc
Confidence 65554 3789999999999999999888999999999999877653221121 123444444677888998887
Q ss_pred CCC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCC-----cccHHHHHHHhCCCcc-----ccHHH
Q 005014 265 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD-----DVDLERIAKDTHGYVG-----ADLAA 329 (719)
Q Consensus 265 ~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~-----~~~l~~la~~t~g~~~-----~dl~~ 329 (719)
.-+ .-|+||.| || ..|.+..|+.++-..||+-...++.... +.-+...+..++.|.. .--..
T Consensus 308 ~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAID 384 (786)
T COG0542 308 LDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAID 384 (786)
T ss_pred HHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHH
Confidence 432 33899998 88 7789999999999999986655443332 2235555555555543 22234
Q ss_pred HHHHHHHHHHHhhcccccc------------cc------------chhhH-------------hHhhccccchHHHHHhh
Q 005014 330 LCTEAALQCIREKMDVIDL------------ED------------ETIDA-------------EILNSMAVTDEHFKTAL 372 (719)
Q Consensus 330 l~~~a~~~~~~~~~~~~~~------------~~------------~~~~~-------------~~~~~~~v~~~~~~~al 372 (719)
++.+|+....-.......+ +. ..+.. ..... .++.+++...+
T Consensus 385 LiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~vv 463 (786)
T COG0542 385 LLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEVV 463 (786)
T ss_pred HHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHHH
Confidence 5555443211110000000 00 00000 00000 13334444443
Q ss_pred ccCC--CCc-cc----ceeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCC----CCcceeeecCCCCchh
Q 005014 373 GTSN--PSA-LR----ETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKT 441 (719)
Q Consensus 373 ~~~~--ps~-~~----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~gill~GppGtGKT 441 (719)
.... |.. +. +.....++.--..+.|+++....+.+.+.. .+.|+. |...+||.||+|+|||
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKT 535 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKT 535 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHH
Confidence 3321 100 00 000111111123467777777777665532 223433 3335999999999999
Q ss_pred HHHHHHHHHhC---CeEEEEeccchhh------------hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCC
Q 005014 442 LLAKAIANECQ---ANFISVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSV 506 (719)
Q Consensus 442 ~la~~la~~~~---~~~i~v~~~~l~~------------~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~ 506 (719)
.||+++|..+. ..++.+++|++.. .|||-.+ =..+-+..|+.++|||+||||++
T Consensus 536 ELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK--------- 604 (786)
T COG0542 536 ELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK--------- 604 (786)
T ss_pred HHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh---------
Confidence 99999999985 7899999999863 2555433 24567778889999999999988
Q ss_pred CCCCCchHHHHHHHHHHhcCCC---------CCCcEEEEEecCCC----------------------------CCCCccc
Q 005014 507 GDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP----------------------------DIIDPAL 549 (719)
Q Consensus 507 ~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~atn~~----------------------------~~ld~al 549 (719)
++..|++-||+.||... +.++.+||+|||-- ..+.|+|
T Consensus 605 -----AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEF 679 (786)
T COG0542 605 -----AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEF 679 (786)
T ss_pred -----cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHH
Confidence 45789999999999742 23579999999941 1345788
Q ss_pred CCCCCcceEEEeCCCCHHHHHHHHHHHhccC-------CCCCccC---HHHHHHHc--cCCCHHHHHHHHHHHHHHHHHH
Q 005014 550 LRPGRLDQLIYIPLPDEESRLQIFKACLRKS-------PVSKDVD---LRALAKYT--QGFSGADITEICQRACKYAIRE 617 (719)
Q Consensus 550 lrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~~~~d---~~~la~~~--~~~sg~di~~~~~~A~~~a~~~ 617 (719)
+. |+|.+|.|.+.+.+...+|+...+... .+.-.++ .+.|++.. ..|-++-|+.+++.-....+.+
T Consensus 680 LN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 680 LN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred Hh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 88 999999999999999999998887532 2222222 34455543 2456677777777766665555
Q ss_pred HH
Q 005014 618 NI 619 (719)
Q Consensus 618 ~~ 619 (719)
.+
T Consensus 758 ~i 759 (786)
T COG0542 758 EI 759 (786)
T ss_pred HH
Confidence 43
No 74
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=2.9e-28 Score=250.07 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=161.0
Q ss_pred ccccc-cchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhccc
Q 005014 118 GYDDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG 196 (719)
Q Consensus 118 ~~~~i-~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g 196 (719)
+|+++ ||+--...-+.+++.-.-+ .....+++.+|.+++||||||||||++|+++|++++..++.+++.++.++|.|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 6665443333333321111 12233678999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHh-----cCCcEEEEccccccCCCCCCCchHHHHHHH-HHHHHHhhcc------------cCCCcEE
Q 005014 197 ESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIV-SQLLTLMDGL------------KSRAHVI 258 (719)
Q Consensus 197 ~~~~~l~~vf~~a~~-----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~-~~L~~~l~~~------------~~~~~vi 258 (719)
++++.++.+|+.|.. ..||||||||||.+++.++.....+..+++ .+|++++|+. .....|.
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999875 469999999999999988755555555555 8999998853 2356799
Q ss_pred EEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCC
Q 005014 259 VIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 321 (719)
Q Consensus 259 vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g 321 (719)
||+|||+|+.|||+|+|+|||++.+ ..|+.++|.+||+.++++..+. ..++..++..++|
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 9999999999999999999999965 6899999999999999887665 4667777777665
No 75
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=3.1e-28 Score=287.78 Aligned_cols=195 Identities=21% Similarity=0.281 Sum_probs=165.0
Q ss_pred hhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhc----------cc----------------
Q 005014 143 PQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL----------AG---------------- 196 (719)
Q Consensus 143 ~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~----------~g---------------- 196 (719)
......+|+.+++||||+||||||||.||+++|++++.+|+.+.++++...+ .|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3455688999999999999999999999999999999999999999988643 11
Q ss_pred ---------------c--hHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---CCCc
Q 005014 197 ---------------E--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---SRAH 256 (719)
Q Consensus 197 ---------------~--~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~---~~~~ 256 (719)
. ...+++.+|+.|+..+||||||||||.++.+.. ....+.+|++.|++.. ...+
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCCCC
Confidence 1 123488899999999999999999999987621 1123688889998753 3457
Q ss_pred EEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHH--hcCCCCCCc-ccHHHHHHHhCCCccccHHHHHHH
Q 005014 257 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH--TKNMKLSDD-VDLERIAKDTHGYVGADLAALCTE 333 (719)
Q Consensus 257 vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~--~~~~~l~~~-~~l~~la~~t~g~~~~dl~~l~~~ 333 (719)
|+||||||.|+.+||||+|+|||++.|.++.|+..+|.+++..+ .+++.+..+ +++..+|+.|.||+|+||..+|.+
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNE 1852 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNE 1852 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988754 455666543 579999999999999999999999
Q ss_pred HHHHHHHhhc
Q 005014 334 AALQCIREKM 343 (719)
Q Consensus 334 a~~~~~~~~~ 343 (719)
|++.++++..
T Consensus 1853 AaliAirq~k 1862 (2281)
T CHL00206 1853 ALSISITQKK 1862 (2281)
T ss_pred HHHHHHHcCC
Confidence 9999888754
No 76
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-24 Score=226.53 Aligned_cols=226 Identities=22% Similarity=0.341 Sum_probs=173.5
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
.+.| ..|+.+.--.+.|+.|.+-+..+.+..+-+++.|..+.+|.|||||||||||+++.|+|+++++..+.++.++..
T Consensus 194 f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~ 272 (457)
T KOG0743|consen 194 FPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK 272 (457)
T ss_pred CCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc
Confidence 3444 678888888899999999999999999999999999999999999999999999999999999999888766542
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCC---CCCC-chHHHHHHHHHHhcCCCCCC--cEEEEEe
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG---DAGG-AADRVLNQLLTEMDGMSAKK--TVFIIGA 538 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~---~~~~-~~~~~~~~ll~~ld~~~~~~--~v~vi~a 538 (719)
.... ++.+...+... +||+|++||+-+..|+.... ..++ ...-.++.||+.+||+-+.. --|||+|
T Consensus 273 -----~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 273 -----LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred -----CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEe
Confidence 2222 88888776555 69999999997764443221 1111 22345899999999996554 6899999
Q ss_pred cCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCC-CCCccCHHHHHHHccCCCHHHHHHHH-HH--HHHHH
Q 005014 539 TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEIC-QR--ACKYA 614 (719)
Q Consensus 539 tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~d~~~la~~~~~~sg~di~~~~-~~--A~~~a 614 (719)
||.++.|||||+||||+|.+||++..+.++-+.++++|+.-.. ...--+++.+...++ .|+||+...+ .. .+..|
T Consensus 345 TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~lm~~~~dad~~ 423 (457)
T KOG0743|consen 345 TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEELMKNKNDADVA 423 (457)
T ss_pred cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHHHhhccccHHHH
Confidence 9999999999999999999999999999999999999996532 111123344444443 7999988743 22 34555
Q ss_pred HHHHHH
Q 005014 615 IRENIE 620 (719)
Q Consensus 615 ~~~~~~ 620 (719)
++..++
T Consensus 424 lk~Lv~ 429 (457)
T KOG0743|consen 424 LKGLVE 429 (457)
T ss_pred HHHHHH
Confidence 555443
No 77
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.8e-24 Score=213.12 Aligned_cols=239 Identities=27% Similarity=0.410 Sum_probs=176.6
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhc-CCCCcceeeecCCCCchhHHHHHHHHHhC---------CeEEEEec
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKG 460 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~gill~GppGtGKT~la~~la~~~~---------~~~i~v~~ 460 (719)
-|+.+.--.++|+.|.......+...+.-.+.+ +...+-+||+||||||||+|+|++|..+. ..++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 377777777788888765543332222111111 23345599999999999999999999863 35789999
Q ss_pred cchhhhccCCchhhHHHHHHHHHhC-----CCEEEEEeccchhhcccCC-CCCCCCCchHHHHHHHHHHhcCCCCCCcEE
Q 005014 461 PELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIATQRGS-SVGDAGGAADRVLNQLLTEMDGMSAKKTVF 534 (719)
Q Consensus 461 ~~l~~~~~g~se~~i~~~f~~a~~~-----~p~il~iDEid~l~~~r~~-~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~ 534 (719)
..+.+||+++|.+.|..+|++.... ..-.++|||+++|+..|.. .++......-|++|.+|++||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999887542 2346779999999998843 223334456799999999999999999999
Q ss_pred EEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccC---CCC----------CccC-----HHHHHHH-c
Q 005014 535 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS---PVS----------KDVD-----LRALAKY-T 595 (719)
Q Consensus 535 vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~---~~~----------~~~d-----~~~la~~-~ 595 (719)
+++|+|..+.||-|+.. |-|-+.|+++|+.+.|+.|++.++.++ ++- .... ...+++. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999998 999999999999999999999998643 111 0011 1222332 4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhh
Q 005014 596 QGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKY 658 (719)
Q Consensus 596 ~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~ 658 (719)
.|.||+-|+.+=--|...-. ....|+..+|..||..
T Consensus 378 ~gLSGRtlrkLP~Laha~y~---------------------------~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAHAEYF---------------------------RTFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHHHHhcc---------------------------CCCccChHHHHHHHHH
Confidence 78888888775544332111 1247888899888754
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=9.3e-23 Score=211.60 Aligned_cols=216 Identities=23% Similarity=0.318 Sum_probs=166.3
Q ss_pred cccccccHHHHHHhhhccccCCCChhhhhhhcCCCCc---ceeeecCCCCchhHHHHHHHHHhC-------CeEEEEecc
Q 005014 392 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK---GVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGP 461 (719)
Q Consensus 392 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~---gill~GppGtGKT~la~~la~~~~-------~~~i~v~~~ 461 (719)
+.+++|++.+|+.+.+.+.+ +.........|+.++. +++|+||||||||++|+++|..+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 35799999999999998876 3445566667766542 389999999999999999998752 368999999
Q ss_pred chhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 005014 462 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 541 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~ 541 (719)
++.+.|+|+++..++.+|+.|.. +||||||+|.+...++. ......+++.|+..|+.. ..+++||+|++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 99999999999888889988753 59999999998754321 235678899999999854 345788888864
Q ss_pred CC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHH------ccCCC-HHHHHHHHH
Q 005014 542 PD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKY------TQGFS-GADITEICQ 608 (719)
Q Consensus 542 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-d~~~la~~------~~~~s-g~di~~~~~ 608 (719)
.. .++|+|.+ ||+.+|+|++|+.+++.+|++.++++....-+. ....+... ...|. ++++++++.
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 22 34799998 999999999999999999999999765432111 12333332 13454 899999999
Q ss_pred HHHHHHHHHHHH
Q 005014 609 RACKYAIRENIE 620 (719)
Q Consensus 609 ~A~~~a~~~~~~ 620 (719)
+|......+...
T Consensus 249 ~~~~~~~~r~~~ 260 (287)
T CHL00181 249 RARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHc
Confidence 998887777643
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=4.7e-22 Score=205.27 Aligned_cols=214 Identities=21% Similarity=0.300 Sum_probs=159.7
Q ss_pred cccccccHHHHHHhhhccccCCCChhhhhhhcCCCC---cceeeecCCCCchhHHHHHHHHHh-------CCeEEEEecc
Q 005014 392 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 461 (719)
Q Consensus 392 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~gill~GppGtGKT~la~~la~~~-------~~~~i~v~~~ 461 (719)
+++++|++.+|+.+.+.+.|+... ......|+.+. .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567899999999999988876443 22233455433 348999999999999999999874 3478899999
Q ss_pred chhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 005014 462 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 541 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~ 541 (719)
++.+.|+|+++..++.+|+.+. .+||||||+|.|... .........++.|+..|+... ..+++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDNR--NEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhccC--CCEEEEecCCc
Confidence 9999999999999999998875 369999999998631 112234678899999998653 34566666543
Q ss_pred CC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHc---------cCCCHHHHHHH
Q 005014 542 PD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYT---------QGFSGADITEI 606 (719)
Q Consensus 542 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-~~~la~~~---------~~~sg~di~~~ 606 (719)
.+ .++|++.+ ||+..|+||+++.+++..|++.++......-+.+ +..+++.. ..-+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 32 37889998 9999999999999999999999998765432222 33343221 12467888888
Q ss_pred HHHHHHHHHHHHH
Q 005014 607 CQRACKYAIRENI 619 (719)
Q Consensus 607 ~~~A~~~a~~~~~ 619 (719)
+..|......+.+
T Consensus 231 ~e~a~~~~~~r~~ 243 (261)
T TIGR02881 231 IEKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHHh
Confidence 8888877766654
No 80
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.88 E-value=3e-22 Score=208.06 Aligned_cols=213 Identities=22% Similarity=0.322 Sum_probs=166.0
Q ss_pred cccccHHHHHHhhhccccCCCChhhhhhhcCCC---CcceeeecCCCCchhHHHHHHHHHhC-------CeEEEEeccch
Q 005014 394 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPEL 463 (719)
Q Consensus 394 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~gill~GppGtGKT~la~~la~~~~-------~~~i~v~~~~l 463 (719)
+++|++++|+.+.+.+.+ ...++.....|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998887 55666777778764 34699999999999999999998763 37999999999
Q ss_pred hhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC--
Q 005014 464 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-- 541 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~-- 541 (719)
.+.|+|+++.+++.+|+.|.. ++|||||++.+...++. .....++.+.|++.|+.. ..+++||+|++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 999999999999999988744 69999999998654321 235677889999999854 356788888764
Q ss_pred CC---CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHc------cCC-CHHHHHHHHHHH
Q 005014 542 PD---IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYT------QGF-SGADITEICQRA 610 (719)
Q Consensus 542 ~~---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-~~~la~~~------~~~-sg~di~~~~~~A 610 (719)
++ .++|+|.+ ||+..|+||+++.+++..|++.++++....-+.+ +..+.... +.+ +++++++++..|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 33 35899999 9999999999999999999999998764321112 33333331 222 579999999999
Q ss_pred HHHHHHHHH
Q 005014 611 CKYAIRENI 619 (719)
Q Consensus 611 ~~~a~~~~~ 619 (719)
......+..
T Consensus 250 ~~~~~~r~~ 258 (284)
T TIGR02880 250 RLRQANRLF 258 (284)
T ss_pred HHHHHHHHh
Confidence 877666653
No 81
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.88 E-value=3.5e-22 Score=184.05 Aligned_cols=130 Identities=47% Similarity=0.794 Sum_probs=118.4
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHhCC-CEEEEEeccchhhcccCCCCCC
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGD 508 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~-p~il~iDEid~l~~~r~~~~~~ 508 (719)
+||+||||||||++++.+|+.++.+++.++++++.+.+.+++++.+..+|+.+.... |+|+||||+|.+..... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 689999999999999999999999999999999999999999999999999999888 99999999999998872 23
Q ss_pred CCCchHHHHHHHHHHhcCCCCC-CcEEEEEecCCCCCCCcccCCCCCcceEEEeCC
Q 005014 509 AGGAADRVLNQLLTEMDGMSAK-KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 563 (719)
Q Consensus 509 ~~~~~~~~~~~ll~~ld~~~~~-~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~ 563 (719)
......+++++|+..|+..... .+++||+|||.++.+|++++| +||+..|++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4556788999999999998765 579999999999999999998 89999999984
No 82
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.1e-21 Score=197.76 Aligned_cols=180 Identities=31% Similarity=0.561 Sum_probs=143.3
Q ss_pred CCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCC-EEEEEeccchhhccc
Q 005014 424 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQR 502 (719)
Q Consensus 424 ~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p-~il~iDEid~l~~~r 502 (719)
..+.+.||||||||||||+.|+-||..+|..+-.+.+.|+.-. -.+.-..|..+|+.+..+.. -++||||+|.++..|
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceR 459 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCER 459 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHh
Confidence 3456779999999999999999999999999988888876431 11334678999999988764 478999999999998
Q ss_pred CCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCC
Q 005014 503 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV 582 (719)
Q Consensus 503 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~ 582 (719)
+.. .-+......+|.||-.-- .....++++.+||+|..+|.|+-. |||.+|+||+|..++|..+++.|+.+.-+
T Consensus 460 nkt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 460 NKT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred chh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 763 334556677888875432 344578999999999999999998 99999999999999999999999875421
Q ss_pred C----C-------------------ccC----HHHHHHHccCCCHHHHHHHHHHH
Q 005014 583 S----K-------------------DVD----LRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 583 ~----~-------------------~~d----~~~la~~~~~~sg~di~~~~~~A 610 (719)
. . ..+ +.+.|+.|+||||++|..++-..
T Consensus 534 ~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 534 KPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred CcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 1 0 011 56788999999999999887543
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=2.6e-19 Score=164.90 Aligned_cols=130 Identities=49% Similarity=0.831 Sum_probs=117.8
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcC-CcEEEEccccccCCCCCCCchH
Q 005014 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGE 235 (719)
Q Consensus 157 vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~iL~iDEid~l~~~~~~~~~~ 235 (719)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.++..+.+..+|+.+.... |++|||||+|.+.++.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 799999999999999999999999999999999998888999999999999998887 9999999999999887545566
Q ss_pred HHHHHHHHHHHHhhcccCC-CcEEEEEecCCCCCCCHHhhccCCCceEEEeCC
Q 005014 236 VERRIVSQLLTLMDGLKSR-AHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 287 (719)
Q Consensus 236 ~~~~v~~~L~~~l~~~~~~-~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~ 287 (719)
....+..+|+..++..... .++++|++||.++.+++.+++ +||+..++++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7788899999999987765 579999999999999999998 89999999873
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.77 E-value=1.1e-17 Score=173.64 Aligned_cols=212 Identities=17% Similarity=0.305 Sum_probs=155.4
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCCC---CceEEEECCCCCChHHHHHHHHHHhC-------CeEEEEechh
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPE 189 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~---~~~vLL~GppGtGKTtla~~la~~l~-------~~~i~v~~~~ 189 (719)
.+++|+++++++|++++.+ +..+++....|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999877 44567777777754 34599999999999999999998752 3588999999
Q ss_pred hhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCC--C
Q 005014 190 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP--N 267 (719)
Q Consensus 190 l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~--~ 267 (719)
+.+.+.|.++..+..+|+.+. +++|||||++.+...++ .......++..|+..|+... ..++||++++.. +
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHH
Confidence 999999988877888888764 46999999999865332 12344667788888887543 456777766532 1
Q ss_pred ---CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCC--CCCcccHHHHHH----H--hCCCc-cccHHHHHHHHH
Q 005014 268 ---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAK----D--THGYV-GADLAALCTEAA 335 (719)
Q Consensus 268 ---~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~--l~~~~~l~~la~----~--t~g~~-~~dl~~l~~~a~ 335 (719)
.++|++++ ||+..|.|++++.+++.+|+..++.... +..+. ...+.. . ...|. ++.+..++.++.
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34689988 9999999999999999999998876433 33322 222222 1 13344 677888887776
Q ss_pred HHHHHhh
Q 005014 336 LQCIREK 342 (719)
Q Consensus 336 ~~~~~~~ 342 (719)
.....+.
T Consensus 252 ~~~~~r~ 258 (287)
T CHL00181 252 MRQANRI 258 (287)
T ss_pred HHHHHHH
Confidence 6554443
No 85
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.76 E-value=1.5e-17 Score=172.85 Aligned_cols=209 Identities=19% Similarity=0.297 Sum_probs=152.9
Q ss_pred cccchHHHHHHHHHHHHcccCChhhHhhhCCCC---CceEEEECCCCCChHHHHHHHHHHhC-------CeEEEEechhh
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPEI 190 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~---~~~vLL~GppGtGKTtla~~la~~l~-------~~~i~v~~~~l 190 (719)
+++|+++++++|.+++.+ +..++.+..+|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999999988 66777888888764 45899999999999999999988763 36889999999
Q ss_pred hhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCC--C-
Q 005014 191 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP--N- 267 (719)
Q Consensus 191 ~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~--~- 267 (719)
.+.+.|.++..++.+|+.+. +++|||||++.+....+ .......+...|+..|+.. ...++||++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 88888988888888888764 36999999999864332 1223456677888888753 3466777766532 2
Q ss_pred --CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHh------CCC-ccccHHHHHHHHHHH
Q 005014 268 --SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT------HGY-VGADLAALCTEAALQ 337 (719)
Q Consensus 268 --~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t------~g~-~~~dl~~l~~~a~~~ 337 (719)
.++|++++ ||...|.+|.++.+++..|++.+++..... ....+..+.... +.+ .++.+..++..+...
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 34789998 999999999999999999999887654322 111123332221 111 245666666666554
Q ss_pred HH
Q 005014 338 CI 339 (719)
Q Consensus 338 ~~ 339 (719)
..
T Consensus 253 ~~ 254 (284)
T TIGR02880 253 QA 254 (284)
T ss_pred HH
Confidence 43
No 86
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.76 E-value=1e-17 Score=197.26 Aligned_cols=204 Identities=26% Similarity=0.377 Sum_probs=144.6
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh--------
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 464 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------- 464 (719)
+++.|++.+|+.+.+.+...... +......++|+||||||||++|+++|+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 35789999999998876542211 111233699999999999999999999999999998765432
Q ss_pred -hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcC-----CC--------CC
Q 005014 465 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----MS--------AK 530 (719)
Q Consensus 465 -~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~--------~~ 530 (719)
..|+|.....+...|..+....| |+||||||.+....+. ...+.||..||. +. +.
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~----------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG----------DPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC----------CHHHHHHHhcCHHhcCccccccCCceecc
Confidence 46888888889999998877766 8999999999753211 124566666653 11 22
Q ss_pred CcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhc-----cCCCC---CccC---HHHHHHH-ccCC
Q 005014 531 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR-----KSPVS---KDVD---LRALAKY-TQGF 598 (719)
Q Consensus 531 ~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~-----~~~~~---~~~d---~~~la~~-~~~~ 598 (719)
.++++|+|||.++.|+++|++ ||+ +|+|+.|+.+++..|++.++. ..++. -.++ +..+++. +..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 579999999999999999999 996 889999999999999988762 22332 1233 3444442 2233
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 005014 599 SGADITEICQRACKYAIRE 617 (719)
Q Consensus 599 sg~di~~~~~~A~~~a~~~ 617 (719)
..++|+..+...+..+..+
T Consensus 539 g~R~l~r~i~~~~~~~~~~ 557 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAVK 557 (775)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 4466666555555444443
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.75 E-value=1.6e-17 Score=161.02 Aligned_cols=189 Identities=26% Similarity=0.408 Sum_probs=125.6
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 468 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 468 (719)
+.+++++.|+++++..+.-.+..... .-....+++||||||+||||||+.+|++++.+|..++++.+.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 44789999999999988755432111 112335699999999999999999999999999999886542
Q ss_pred CCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----C-----------CCc
Q 005014 469 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A-----------KKT 532 (719)
Q Consensus 469 g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~-----------~~~ 532 (719)
....+..++..... ..|||||||+.+- +.+...|+..|+... + ..+
T Consensus 88 --k~~dl~~il~~l~~--~~ILFIDEIHRln--------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 --KAGDLAAILTNLKE--GDILFIDEIHRLN--------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --SCHHHHHHHHT--T--T-EEEECTCCC----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --hHHHHHHHHHhcCC--CcEEEEechhhcc--------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 23445555555543 4699999999973 345667778887642 1 135
Q ss_pred EEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHccCCCHHHHHHHHHHH
Q 005014 533 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 533 v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-~~~la~~~~~~sg~di~~~~~~A 610 (719)
+.+|+||++...|.+.|.. ||..+..+..++.++...|++...+...+.-+.+ ..++|..+.| +++--.++++++
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 8899999999999999998 9998889999999999999998888776653333 5567777764 677656666554
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=2.3e-17 Score=193.36 Aligned_cols=244 Identities=22% Similarity=0.288 Sum_probs=166.8
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEEec
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 460 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v~~ 460 (719)
.++++.|.++....+.+.+. .....+++|+||||||||++++++|..+ +..++.++.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 56677888776665554432 2234579999999999999999999987 678899998
Q ss_pred cchh--hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEe
Q 005014 461 PELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 538 (719)
Q Consensus 461 ~~l~--~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~a 538 (719)
..+. .+|.|+.++.++.+|+.+....++||||||+|.+.+.+..+. + ...+.+.|+..|. .+.+.+|+|
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~----~-~~~~~~~L~~~l~----~g~i~~Iga 317 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG----G-SMDASNLLKPALS----SGKLRCIGS 317 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC----c-cHHHHHHHHHHHh----CCCeEEEEe
Confidence 8887 589999999999999999877889999999999987653221 1 1223344444443 457899999
Q ss_pred cCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCC----CC-CccCHHHHHHHccCCCH-----HHH
Q 005014 539 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP----VS-KDVDLRALAKYTQGFSG-----ADI 603 (719)
Q Consensus 539 tn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~----~~-~~~d~~~la~~~~~~sg-----~di 603 (719)
||..+ .+|+|+.| ||. .|+|+.|+.+++..|++....... +. .+..+..++..+..|-+ .--
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 99743 57999999 997 799999999999999997765421 11 22334555555544422 211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHHh
Q 005014 604 TEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR----RSVSDADIRKYQAFAQTLQ 679 (719)
Q Consensus 604 ~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~----~sv~~~~~~~~~~~~~~~~ 679 (719)
-.++.+|+....-+. . ......|+.+|+..++.... ..++.++..++....+.+.
T Consensus 395 i~lld~a~a~~~~~~-------------~--------~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~ 453 (731)
T TIGR02639 395 IDVIDEAGASFRLRP-------------K--------AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLK 453 (731)
T ss_pred HHHHHHhhhhhhcCc-------------c--------cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHh
Confidence 234444443211100 0 00123588999999987653 2456677777776666654
Q ss_pred h
Q 005014 680 Q 680 (719)
Q Consensus 680 ~ 680 (719)
.
T Consensus 454 ~ 454 (731)
T TIGR02639 454 A 454 (731)
T ss_pred c
Confidence 4
No 89
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=5.5e-17 Score=167.54 Aligned_cols=175 Identities=22% Similarity=0.320 Sum_probs=131.6
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhHhhhCCC---CCceEEEECCCCCChHHHHHHHHHHh-------CCeEEEEech
Q 005014 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANET-------GAFFFCINGP 188 (719)
Q Consensus 119 ~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~---~~~~vLL~GppGtGKTtla~~la~~l-------~~~~i~v~~~ 188 (719)
+++++|+++++++|++++.++... ......|+. ...+++|+|||||||||+|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467999999999999998875433 233344554 33569999999999999999999874 2367888999
Q ss_pred hhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCC--
Q 005014 189 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP-- 266 (719)
Q Consensus 189 ~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~-- 266 (719)
++.+.+.|+....++.+|+.+. +++|||||+|.+....+ .......+..|+..|+... ..+++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDNR--NEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhccC--CCEEEEecCCcchh
Confidence 9999999999888999998764 46999999999974321 1223455677777777643 345555444322
Q ss_pred ---CCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCC
Q 005014 267 ---NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM 304 (719)
Q Consensus 267 ---~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~ 304 (719)
..++|++++ ||...+.++.++.+++.+|++.++...
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 236788887 999999999999999999999877644
No 90
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=5e-16 Score=164.63 Aligned_cols=192 Identities=24% Similarity=0.343 Sum_probs=134.5
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCC
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 470 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~ 470 (719)
+|+++.|++++++.|...+..... ....+.+++|+||||||||++|+++|++++.++..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 689999999999998877642111 1123456999999999999999999999988876665543321
Q ss_pred chhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC----------------CCCcEE
Q 005014 471 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTVF 534 (719)
Q Consensus 471 se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~v~ 534 (719)
...+...+... ..+.++||||++.+... ..+.|+..|+... ....+.
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12233333332 34579999999998431 2233444443221 112478
Q ss_pred EEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHH
Q 005014 535 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKY 613 (719)
Q Consensus 535 vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~sg~di~~~~~~A~~~ 613 (719)
+|++||++..+++++.+ ||..++.+++|+.+++.+|++..+....+.- +..++.+++.+.| +++.+.+++..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHH
Confidence 99999999999999988 9998999999999999999999887654432 2235677877776 447777788766554
Q ss_pred HH
Q 005014 614 AI 615 (719)
Q Consensus 614 a~ 615 (719)
|.
T Consensus 209 a~ 210 (305)
T TIGR00635 209 AQ 210 (305)
T ss_pred HH
Confidence 43
No 91
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=6.9e-16 Score=164.82 Aligned_cols=233 Identities=23% Similarity=0.315 Sum_probs=161.7
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 468 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 468 (719)
+.+|+++.|.++.++.+...+.... . .-.++.+++||||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~-------~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK-------K-RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHH-------h-cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 3479999999999999887664211 1 123456799999999999999999999999888777765432
Q ss_pred CCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC----------------CCCc
Q 005014 469 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 532 (719)
Q Consensus 469 g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~ 532 (719)
....+..++... ..++|+||||||.+... .. +.|...|+... ....
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VE---EILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HH---HHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 223445555544 34579999999998421 11 22333343221 1124
Q ss_pred EEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 533 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 533 v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
+.+|++||++..+++++.+ ||...+.|++|+.+++.+|++..+....+.-+ .-+..+++.+.| +++.+..+++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHH
Confidence 7889999999999999987 99999999999999999999999877655422 236777777775 4577778887766
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHHh
Q 005014 612 KYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR---SVSDADIRKYQAFAQTLQ 679 (719)
Q Consensus 612 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~---sv~~~~~~~~~~~~~~~~ 679 (719)
..|..+. ...|+.+++..++..... .+++.+.+.+..+.+.|.
T Consensus 228 ~~a~~~~-------------------------~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (328)
T PRK00080 228 DFAQVKG-------------------------DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFG 273 (328)
T ss_pred HHHHHcC-------------------------CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcC
Confidence 5554331 125777777888776543 345556666655666654
No 92
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.1e-17 Score=162.48 Aligned_cols=148 Identities=31% Similarity=0.443 Sum_probs=124.6
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC---------CeEEEEechhhhhhcccchHHHHHHHHHHHHhc-----CCcEE
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEIMSKLAGESESNLRKAFEEAEKN-----APSII 217 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~---------~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~-----~p~iL 217 (719)
...+-|||+||||||||+|++++|..+. ...+.+++..++++|.+++.+.+..+|+....- .-..+
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 4456699999999999999999999874 346899999999999999999999999976541 12356
Q ss_pred EEccccccCCCCCCC----chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHH
Q 005014 218 FIDEIDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGR 293 (719)
Q Consensus 218 ~iDEid~l~~~~~~~----~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R 293 (719)
+|||++.++..+... .....-|+++.+++.+|.++..++|++++|+|-.+.+|.|+-. |-|-..++++|+...+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai 332 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAI 332 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHH
Confidence 799999998665211 1123468999999999999999999999999999999999987 8999999999999999
Q ss_pred HHHHHHHh
Q 005014 294 LEVLRIHT 301 (719)
Q Consensus 294 ~~il~~~~ 301 (719)
++|++...
T Consensus 333 ~~Ilksci 340 (423)
T KOG0744|consen 333 YEILKSCI 340 (423)
T ss_pred HHHHHHHH
Confidence 99998654
No 93
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.4e-16 Score=160.04 Aligned_cols=178 Identities=30% Similarity=0.544 Sum_probs=132.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCC-cEEEEccccccCCCCCC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAP-SIIFIDEIDSIAPKREK 231 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p-~iL~iDEid~l~~~~~~ 231 (719)
+-++|++|||||||||++|+.||...|..+-...|.++.. .-.+.-..+..+|+-+..... -+|||||.|.++-.+..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 3457999999999999999999999999988888877643 222345678999999887554 47889999988766643
Q ss_pred C-chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC---
Q 005014 232 T-HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS--- 307 (719)
Q Consensus 232 ~-~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~--- 307 (719)
. -++..+..++.|+- ..-.....++++.+||.|.++|.++-. |++..++||.|.+++|..+|..++.++.+.
T Consensus 462 tymSEaqRsaLNAlLf--RTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLF--RTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred hhhcHHHHHHHHHHHH--HhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 3 23334444444431 112233467778899999999999987 999999999999999999998776543211
Q ss_pred ---------------------C---cccHHHHHHHhCCCccccHHHHHHHHH
Q 005014 308 ---------------------D---DVDLERIAKDTHGYVGADLAALCTEAA 335 (719)
Q Consensus 308 ---------------------~---~~~l~~la~~t~g~~~~dl~~l~~~a~ 335 (719)
. +.-+.+.|+.|+||+|+.|..|+....
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQ 589 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 0 012567889999999999998876543
No 94
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=2.2e-16 Score=182.60 Aligned_cols=176 Identities=24% Similarity=0.303 Sum_probs=129.9
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh----------CCeEEEEeccchh--hhccCCchhhHHHHHHHHHhCCCEEEEEec
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVREIFDKARQSAPCVLFFDE 494 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~----------~~~~i~v~~~~l~--~~~~g~se~~i~~~f~~a~~~~p~il~iDE 494 (719)
..++||+||||||||++|+++|... +..++.++...++ .+|.|+.+..++.+|+.++...++||||||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDE 286 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE 286 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEecc
Confidence 4568999999999999999999874 4566666666665 578899999999999999888889999999
Q ss_pred cchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC-----CCCcccCCCCCcceEEEeCCCCHHHH
Q 005014 495 LDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESR 569 (719)
Q Consensus 495 id~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r 569 (719)
||.+++.++.+. ....+.+.|...+ ..+.+.+|+|||.++ ..|+||.| ||+ .|+++.|+.+++
T Consensus 287 Ih~L~g~g~~~~-----g~~d~~nlLkp~L----~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~ 354 (758)
T PRK11034 287 IHTIIGAGAASG-----GQVDAANLIKPLL----SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEET 354 (758)
T ss_pred HHHHhccCCCCC-----cHHHHHHHHHHHH----hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHH
Confidence 999987653221 1122223222222 356799999999865 57999999 996 899999999999
Q ss_pred HHHHHHHhccCCCCCccCHHH-----HHHHcc-----CCCHHHHHHHHHHHHHHH
Q 005014 570 LQIFKACLRKSPVSKDVDLRA-----LAKYTQ-----GFSGADITEICQRACKYA 614 (719)
Q Consensus 570 ~~Il~~~~~~~~~~~~~d~~~-----la~~~~-----~~sg~di~~~~~~A~~~a 614 (719)
..||+.+..++....++++.. .+..+. .+-+...-.++.+|+...
T Consensus 355 ~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~ 409 (758)
T PRK11034 355 VQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARA 409 (758)
T ss_pred HHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhh
Confidence 999998877665555554332 233233 233446667888887643
No 95
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-16 Score=173.72 Aligned_cols=165 Identities=28% Similarity=0.448 Sum_probs=129.9
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh--------
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 464 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------- 464 (719)
+|-.|++++|+.+.+++...... |-...+-++|+||||+|||++++.||..++..|+.++-..+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46679999999999887532111 222233489999999999999999999999999988754432
Q ss_pred -hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhc---------CC----CCC
Q 005014 465 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD---------GM----SAK 530 (719)
Q Consensus 465 -~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld---------~~----~~~ 530 (719)
..|+|.....+-+..+...-.+| +++|||||++. ++.. ++.. +.||..|| .+ .+.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~q-GDPa-------sALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQ-GDPA-------SALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCC-CChH-------HHHHHhcChhhccchhhhccccccch
Confidence 46999999999999999998888 88899999997 2222 2211 33444333 22 245
Q ss_pred CcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhc
Q 005014 531 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR 578 (719)
Q Consensus 531 ~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~ 578 (719)
.+|++|||.|..+.|+++|+. |+. +|.++-+..++...|.+.|+-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 689999999999999999998 996 999999999999999999983
No 96
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.7e-16 Score=169.94 Aligned_cols=201 Identities=26% Similarity=0.369 Sum_probs=147.1
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh--------
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 464 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------- 464 (719)
.+-.|++++|+.+.+.+...... +-....-+||+||||+|||+|++.+|..++..|+.++...+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 35579999999999887532111 111122389999999999999999999999999998764443
Q ss_pred -hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcC---------C----CCC
Q 005014 465 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG---------M----SAK 530 (719)
Q Consensus 465 -~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~---------~----~~~ 530 (719)
..|+|.....+-+-+..|...+| ++++||||.+...-. ++.. +.||..||- . .+.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r---GDPa-------SALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR---GDPA-------SALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC---CChH-------HHHHhhcCHhhcCchhhccccCccch
Confidence 46999999999999999999998 889999999975321 2221 344444442 1 245
Q ss_pred CcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhc-----cCCCCCccCHHHHHHHccCCCHHHHHH
Q 005014 531 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR-----KSPVSKDVDLRALAKYTQGFSGADITE 605 (719)
Q Consensus 531 ~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~-----~~~~~~~~d~~~la~~~~~~sg~di~~ 605 (719)
.+|++|+|.|..+.|+.+|+. |+. +|.++-++.++..+|.+.|+= ..++..+ --.|+..-|..
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~---------el~i~d~ai~~ 532 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKG---------ELTITDEAIKD 532 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCcc---------ceeecHHHHHH
Confidence 689999999999999999998 996 999999999999999999882 2233211 11255566666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005014 606 ICQRACKYAIRENIEKDI 623 (719)
Q Consensus 606 ~~~~A~~~a~~~~~~~~~ 623 (719)
+++.-...|-.|++++.+
T Consensus 533 iI~~YTREAGVR~LeR~i 550 (782)
T COG0466 533 IIRYYTREAGVRNLEREI 550 (782)
T ss_pred HHHHHhHhhhhhHHHHHH
Confidence 666666666555555443
No 97
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.67 E-value=2.5e-15 Score=155.18 Aligned_cols=229 Identities=22% Similarity=0.351 Sum_probs=151.9
Q ss_pred CCccccccccHHHHH---HhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 389 NVNWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
..+++++.|++.+.. .|.+++. -....+++|||||||||||||++||+..+..|..+++-.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 456788888876542 1222221 123346999999999999999999999999999998632
Q ss_pred hccCCchhhHHHHHHHHHhCC----CEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEec--
Q 005014 466 MWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-- 539 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~at-- 539 (719)
.+-+.++.+++.|++.. ..|||+|||+.+-.. -...||-.|+ .+.+++||||
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccCC
Confidence 35678999999996543 479999999997321 1234555554 4568888887
Q ss_pred CCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHh--ccCCCC------CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 540 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL--RKSPVS------KDVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 540 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~--~~~~~~------~~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
|.--.+.+||++ |.- ++.+.+.+.++...+++.-+ .+.++. .+.-++.++..++ +|.+.+++..-
T Consensus 142 NPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~----GD~R~aLN~LE 214 (436)
T COG2256 142 NPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN----GDARRALNLLE 214 (436)
T ss_pred CCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC----chHHHHHHHHH
Confidence 555689999998 874 88899999999999998844 222333 1222444555554 47666554433
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccCCCC
Q 005014 612 KYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGS 686 (719)
Q Consensus 612 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~~~~~~~ 686 (719)
+.+.... ....+..+.+++.++...+.-.+.-=..|.-...-.++-|++++
T Consensus 215 ~~~~~~~------------------------~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 215 LAALSAE------------------------PDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred HHHHhcC------------------------CCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCc
Confidence 2222110 00133466777777665555555556677777777777777766
No 98
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.67 E-value=3.9e-15 Score=146.74 Aligned_cols=232 Identities=23% Similarity=0.339 Sum_probs=164.9
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 468 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 468 (719)
...|++..|++++|+.|.-++...... -...-++|||||||.||||||..+|++++.++-..+++-+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-----
Confidence 456889999999999998776543222 2334569999999999999999999999999988888776
Q ss_pred CCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC----------------CCCc
Q 005014 469 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 532 (719)
Q Consensus 469 g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~ 532 (719)
+....+..++...... +|+|||||+.+.+ .+-.-|.-.|+.+. +...
T Consensus 89 -eK~gDlaaiLt~Le~~--DVLFIDEIHrl~~--------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 89 -EKPGDLAAILTNLEEG--DVLFIDEIHRLSP--------------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -cChhhHHHHHhcCCcC--CeEEEehhhhcCh--------------hHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 2345566677665444 6999999999843 12233445565531 1235
Q ss_pred EEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 533 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 533 v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
+.+|+||.+.-.|...|.. ||..+..+..++.++...|++...+.+.+.-+. ...++|+.+.| |++--..++++.-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8899999999999988887 999999999999999999999999877766333 36678888775 6665556666665
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHH
Q 005014 612 KYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR---RSVSDADIRKYQAFAQTL 678 (719)
Q Consensus 612 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~---~sv~~~~~~~~~~~~~~~ 678 (719)
-.|..+. ...|+.+-..+|++.+. --+..-+.+..+...++|
T Consensus 229 Dfa~V~~-------------------------~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f 273 (332)
T COG2255 229 DFAQVKG-------------------------DGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQF 273 (332)
T ss_pred HHHHHhc-------------------------CCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHh
Confidence 5554332 12455555555555432 234455566666666665
No 99
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-15 Score=160.57 Aligned_cols=177 Identities=27% Similarity=0.368 Sum_probs=133.3
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccc
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 197 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~ 197 (719)
+|+.++=-.+.+++|.+=+..-.+..+.+++.|..-.+|.|||||||||||+++.|+|+.++..++-++-.++..
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----- 273 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----- 273 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----
Confidence 455555444555666555555467788999999999999999999999999999999999999887776554422
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCch----H---HHHHHHHHHHHHhhcccCCC--cEEEEEecCCCCC
Q 005014 198 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG----E---VERRIVSQLLTLMDGLKSRA--HVIVIGATNRPNS 268 (719)
Q Consensus 198 ~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~----~---~~~~v~~~L~~~l~~~~~~~--~vivI~atn~~~~ 268 (719)
. ..++.++-.... .+||+|++||.-+.-+..... . ...-.++.|++.+|++.+.. .-++|-|||..+.
T Consensus 274 n-~dLr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~Ek 350 (457)
T KOG0743|consen 274 D-SDLRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEK 350 (457)
T ss_pred c-HHHHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhh
Confidence 1 227776666543 479999999987542211110 0 11234577999999998765 5677789999999
Q ss_pred CCHHhhccCCCceEEEeCCCChHHHHHHHHHHhc
Q 005014 269 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 302 (719)
Q Consensus 269 ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~ 302 (719)
+||||.|+||.|.+|+++.=+.++-..++..++.
T Consensus 351 LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 351 LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999998888877776654
No 100
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.4e-14 Score=164.02 Aligned_cols=160 Identities=24% Similarity=0.356 Sum_probs=106.1
Q ss_pred cccccc-hHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC----------CeEEEEec
Q 005014 119 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCING 187 (719)
Q Consensus 119 ~~~i~G-~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~----------~~~i~v~~ 187 (719)
.+.+.| .++.++.+.+.+.. ...++-+|+|.||+|||.++.-++...- ..++.++-
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 344444 47777777666543 2235789999999999999999988751 23344443
Q ss_pred hhhh--hhcccchHHHHHHHHHHHH-hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecC
Q 005014 188 PEIM--SKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 264 (719)
Q Consensus 188 ~~l~--~~~~g~~~~~l~~vf~~a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn 264 (719)
..+. .++.|+.+.+++.+...+. .....||||||++.+........ . ....+++.....++.+.+||||.
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~------~d~~nlLkp~L~rg~l~~IGatT 324 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-A------IDAANLLKPLLARGGLWCIGATT 324 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-H------HHHHHhhHHHHhcCCeEEEeccc
Confidence 3332 3567889999999999888 45667899999999987664421 1 11122233333445588998776
Q ss_pred CCC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 265 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 265 ~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
.-. .-+|++.+ || ..+.++.|+.+.-..||....
T Consensus 325 ~e~Y~k~iekdPalEr--rw-~l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 325 LETYRKCIEKDPALER--RW-QLVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred HHHHHHHHhhCcchhh--Cc-ceeEeccCcccchhhhhhhhh
Confidence 321 33889987 77 446889999877666665443
No 101
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.65 E-value=2.2e-15 Score=146.24 Aligned_cols=181 Identities=28% Similarity=0.447 Sum_probs=116.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
.+.+-+++|+.|.++.+..+.-++....... .+..++|||||||+||||||+.+|++++..+...+++.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 4567799999999999998876665432211 23458999999999999999999999999999888765421
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----CC-----------Cc
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----SR-----------AH 256 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-----~~-----------~~ 256 (719)
...+..++... ....||||||||.+.. ...+.|+..|+... .. ++
T Consensus 89 ------~~dl~~il~~l--~~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ------AGDLAAILTNL--KEGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ------CHHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ------HHHHHHHHHhc--CCCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 12333444443 2456999999998853 23455677776432 11 35
Q ss_pred EEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCC
Q 005014 257 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 322 (719)
Q Consensus 257 vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 322 (719)
+.+||||++...+.+.|+. ||.....+..++.++...|++...+.+.+. ++.....+|.++.|-
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 7899999999999999997 999988999999999999998655544433 233467778877763
No 102
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.64 E-value=4.3e-15 Score=160.95 Aligned_cols=222 Identities=22% Similarity=0.288 Sum_probs=146.2
Q ss_pred ccccHHHHHHhhhccccCCCChhh-hhh-hcC-CCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh-hhccCC
Q 005014 395 IGGLENVKRELQETVQYPVEHPEK-FEK-FGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGE 470 (719)
Q Consensus 395 i~g~~~~k~~l~~~i~~~~~~~~~-~~~-~~~-~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-~~~~g~ 470 (719)
|.|++.+++.|...+......... ... -.. .+..++||+||||||||++|+++|..++.+|+.++++.+. ..|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 789999999887655321111100 000 011 1345699999999999999999999999999999998875 468887
Q ss_pred chhh-HHHHHHHH----HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----------CCCcEE
Q 005014 471 SEAN-VREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVF 534 (719)
Q Consensus 471 se~~-i~~~f~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~ 534 (719)
...+ +..+++.+ ....++||||||||.+..++...+...+.....+.+.||+.|+|-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 6544 45555432 2346789999999999876433222222233568899999998631 112356
Q ss_pred EEEecCCCC----------------------------------------------------CCCcccCCCCCcceEEEeC
Q 005014 535 IIGATNRPD----------------------------------------------------IIDPALLRPGRLDQLIYIP 562 (719)
Q Consensus 535 vi~atn~~~----------------------------------------------------~ld~allrpgRf~~~i~~~ 562 (719)
+|.|+|-.. -+.|+|+. |+|.+++|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 666666410 03466664 999999999
Q ss_pred CCCHHHHHHHHHH----Hhc-------cCCCCCccC---HHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHH
Q 005014 563 LPDEESRLQIFKA----CLR-------KSPVSKDVD---LRALAKY--TQGFSGADITEICQRACKYAIREN 618 (719)
Q Consensus 563 ~p~~~~r~~Il~~----~~~-------~~~~~~~~d---~~~la~~--~~~~sg~di~~~~~~A~~~a~~~~ 618 (719)
+.+.++...|+.. .++ ..++.-.++ ++.|++. ..++-.+-|+.++++...-.+.+.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 9999999999973 322 223332233 4556664 234556788888888777766554
No 103
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.62 E-value=1.5e-14 Score=168.84 Aligned_cols=204 Identities=22% Similarity=0.352 Sum_probs=143.2
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh--------
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 464 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------- 464 (719)
.+..|++++|+.+.+.+..... .+......++|+||||||||++++.+|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 3578999999999877653211 1112233599999999999999999999999999888765432
Q ss_pred -hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC-------------CCC
Q 005014 465 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------------SAK 530 (719)
Q Consensus 465 -~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-------------~~~ 530 (719)
..|+|.....+...+..+....| |+||||||.+..... + ...+.|+..||.- .+.
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-------g---~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-------G---DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-------C---CHHHHHHHHhccccEEEEecccccccccC
Confidence 35788887788777777765555 899999999865321 1 1346677777631 134
Q ss_pred CcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhcc-----CCCC---CccC---HHHHHHH-ccCC
Q 005014 531 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-----SPVS---KDVD---LRALAKY-TQGF 598 (719)
Q Consensus 531 ~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-----~~~~---~~~d---~~~la~~-~~~~ 598 (719)
.++++|+|+|.. .|+|+|+. ||+ +|.|++++.++..+|.+.++.. ..+. -.++ +..+++. +..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 789999999987 49999998 996 8999999999999999988841 1111 1222 3344432 2233
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 005014 599 SGADITEICQRACKYAIREN 618 (719)
Q Consensus 599 sg~di~~~~~~A~~~a~~~~ 618 (719)
-.+.|+.+++..+..++.+.
T Consensus 540 GaR~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQL 559 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 44777777777666555554
No 104
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.60 E-value=1.2e-14 Score=153.88 Aligned_cols=176 Identities=26% Similarity=0.399 Sum_probs=128.3
Q ss_pred cccccHHHHHHhhhccccCCCChhhhhhh-cCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh-hccC-C
Q 005014 394 DIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 470 (719)
Q Consensus 394 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-~~~g-~ 470 (719)
.+.|+++.|+.+...+............+ .-..++++||+||||||||++|+++|..++.+|+.+++..+.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 36799999988876554211111000000 1123578999999999999999999999999999999998874 7888 5
Q ss_pred chhhHHHHHHHHH-------------------------------------------------------------------
Q 005014 471 SEANVREIFDKAR------------------------------------------------------------------- 483 (719)
Q Consensus 471 se~~i~~~f~~a~------------------------------------------------------------------- 483 (719)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6777777776650
Q ss_pred ------------------------------------------------------------------------hCCCEEEE
Q 005014 484 ------------------------------------------------------------------------QSAPCVLF 491 (719)
Q Consensus 484 ------------------------------------------------------------------------~~~p~il~ 491 (719)
.....|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01335999
Q ss_pred EeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC--------CCCcEEEEEecC----CCCCCCcccCCCCCcceEE
Q 005014 492 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLI 559 (719)
Q Consensus 492 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~atn----~~~~ld~allrpgRf~~~i 559 (719)
|||||+++.+.++... +-...-|...||..++|-. +.+++++||+.. .|+.|=|.|. |||..++
T Consensus 253 iDEiDKIa~~~~~~~~--DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSGA--DVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCCC--CCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 9999999976533222 2233458889999999842 346788888864 4666777887 6999999
Q ss_pred EeCCCCHHHHHHHH
Q 005014 560 YIPLPDEESRLQIF 573 (719)
Q Consensus 560 ~~~~p~~~~r~~Il 573 (719)
.+.+++.++...||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999888
No 105
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.59 E-value=1.6e-14 Score=155.59 Aligned_cols=223 Identities=21% Similarity=0.298 Sum_probs=146.9
Q ss_pred cccccHHHHHHhhhccccCCCChhh----hhhhcCC-CCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh-hhc
Q 005014 394 DIGGLENVKRELQETVQYPVEHPEK----FEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMW 467 (719)
Q Consensus 394 ~i~g~~~~k~~l~~~i~~~~~~~~~----~~~~~~~-~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-~~~ 467 (719)
.+.|++++++.+...+......-.. ....+.. ...++||+||||||||++|+++|..++.+|..+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3689999999887665211111000 0000111 134699999999999999999999999999999988765 368
Q ss_pred cCCch-hhHHHHHHHH----HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----------CCC
Q 005014 468 FGESE-ANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK 531 (719)
Q Consensus 468 ~g~se-~~i~~~f~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~ 531 (719)
+|... ..+..+++.+ ....++||||||||.+..++...+...+-....+.+.||+.|+|.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 88863 4445554432 2345789999999999876543222222223468899999998752 123
Q ss_pred cEEEEEecCCC---------------------------C-----------------------CCCcccCCCCCcceEEEe
Q 005014 532 TVFIIGATNRP---------------------------D-----------------------IIDPALLRPGRLDQLIYI 561 (719)
Q Consensus 532 ~v~vi~atn~~---------------------------~-----------------------~ld~allrpgRf~~~i~~ 561 (719)
+.++|.|+|-. + -+.|+|+. |+|.+++|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 56788888861 0 03467775 99999999
Q ss_pred CCCCHHHHHHHHHHH----hcc-------CCCCCccC---HHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHH
Q 005014 562 PLPDEESRLQIFKAC----LRK-------SPVSKDVD---LRALAKYT--QGFSGADITEICQRACKYAIREN 618 (719)
Q Consensus 562 ~~p~~~~r~~Il~~~----~~~-------~~~~~~~d---~~~la~~~--~~~sg~di~~~~~~A~~~a~~~~ 618 (719)
.+.+.++..+|+... +++ .++.-.++ ++.|++.. ..+-.+-|+.+++...+.++.+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999999998753 221 12332233 45566653 34556888888888777666654
No 106
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=2.4e-14 Score=168.88 Aligned_cols=163 Identities=23% Similarity=0.329 Sum_probs=121.8
Q ss_pred cccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhh---------
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM--------- 191 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~--------- 191 (719)
++.|+++.++.|.+++......+ -..+.++||+||||||||++|+++|+.++.+++.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 58899999999988776532221 12345799999999999999999999999999888754321
Q ss_pred hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc-----c--------CCCcEE
Q 005014 192 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHVI 258 (719)
Q Consensus 192 ~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~-----~--------~~~~vi 258 (719)
..|.|.....+...|..+....| ++||||||.+.+..+.. ..+.|+..++.. . ...+++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 24556666677777877765555 89999999998653322 123455555421 1 124788
Q ss_pred EEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 259 VIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 259 vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
+|+|||.++.+++++++ || ..|.++.|+.+++.+|++.++
T Consensus 466 ~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 99999999999999998 88 578999999999999998664
No 107
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=4.3e-14 Score=158.60 Aligned_cols=187 Identities=21% Similarity=0.308 Sum_probs=137.4
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|||||++++++|+.+++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 45799999999999999887642 133456899999999999999999998754
Q ss_pred ---------eEEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 454 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 454 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
.++.++..+ ..+-..++.+.+.+.. ....|+||||+|.|. ....|.|
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NAL 139 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAM 139 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHH
Confidence 233333321 1123446666665542 345799999999983 2457888
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~s 599 (719)
|+.|+.. ..++.+|++||.++.|.+.+++ |+ .++.|..++.++....|+..+++.++. .+..+..|++.++| +
T Consensus 140 LKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988854 3467888899999999999998 88 599999999999999999988776654 23336667777764 6
Q ss_pred HHHHHHHHHHHHHH
Q 005014 600 GADITEICQRACKY 613 (719)
Q Consensus 600 g~di~~~~~~A~~~ 613 (719)
.++..+++..+...
T Consensus 214 mRdALsLLdQAia~ 227 (830)
T PRK07003 214 MRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777776666543
No 108
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2e-14 Score=159.36 Aligned_cols=186 Identities=23% Similarity=0.314 Sum_probs=137.6
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
..+|++++|++.+++.|.+.+.. -+.+..+||+||+|||||++|+.+|+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 45789999999999999887652 123456899999999999999999998865
Q ss_pred --------------eEEEEeccchhhhccCCchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHH
Q 005014 454 --------------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADR 515 (719)
Q Consensus 454 --------------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 515 (719)
.++.++... ..+-..++++.+.+. .....|+||||+|.|. ..
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~ 139 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NH 139 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HH
Confidence 223333221 112345666666543 3345799999999983 34
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHH
Q 005014 516 VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKY 594 (719)
Q Consensus 516 ~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-d~~~la~~ 594 (719)
..|.||+.|+.- ..++++|++||.++.|.+.+++ |+ .++.|..++.++....++..+.+.++..+. .+..|++.
T Consensus 140 AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 578899998853 4567888899999999999998 88 589999999999999999888766554332 25667777
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 005014 595 TQGFSGADITEICQRACK 612 (719)
Q Consensus 595 ~~~~sg~di~~~~~~A~~ 612 (719)
++ -+.++..+++..+..
T Consensus 215 A~-Gs~RdALsLLdQaia 231 (700)
T PRK12323 215 AQ-GSMRDALSLTDQAIA 231 (700)
T ss_pred cC-CCHHHHHHHHHHHHH
Confidence 66 477887777766543
No 109
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.57 E-value=4.2e-14 Score=159.42 Aligned_cols=210 Identities=24% Similarity=0.327 Sum_probs=142.2
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEE
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 458 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v 458 (719)
..+|+++.|.+...+.+...+.. ..+.+++|+||||||||++|+++...+ +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 46789999999988888754321 123569999999999999999998653 3578999
Q ss_pred eccch-------hhhccCCchhhH----------------HHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHH
Q 005014 459 KGPEL-------LTMWFGESEANV----------------REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADR 515 (719)
Q Consensus 459 ~~~~l-------~~~~~g~se~~i----------------~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 515 (719)
++... ....+|.....+ ...+.. ....+||||||+.+.. .
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~~--------------~ 190 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELHP--------------V 190 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCCH--------------H
Confidence 87532 111111100000 001222 2336999999999742 3
Q ss_pred HHHHHHHHhcCC---------------------------CCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHH
Q 005014 516 VLNQLLTEMDGM---------------------------SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEES 568 (719)
Q Consensus 516 ~~~~ll~~ld~~---------------------------~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~ 568 (719)
..+.||..|+.- ...+-.+|++|||.|+.|+|++++ |+. .|+|++++.++
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ee 267 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEE 267 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHH
Confidence 456666655421 011224556667789999999998 885 78999999999
Q ss_pred HHHHHHHHhccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccc
Q 005014 569 RLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEI 647 (719)
Q Consensus 569 r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 647 (719)
+..|++..+++..+.- +..++.++..+ ++++++.++|+.|+..|..+. ...|
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~-------------------------~~~I 320 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG-------------------------RKRI 320 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC-------------------------CcEE
Confidence 9999999998765432 22245555544 489999999999988775532 2368
Q ss_pred cHHHHHHHHhh
Q 005014 648 KAVHFEESMKY 658 (719)
Q Consensus 648 ~~~~~~~a~~~ 658 (719)
+.+|++.++..
T Consensus 321 t~~dI~~vl~~ 331 (531)
T TIGR02902 321 LAEDIEWVAEN 331 (531)
T ss_pred cHHHHHHHhCC
Confidence 88899998763
No 110
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.57 E-value=1.5e-14 Score=171.23 Aligned_cols=165 Identities=21% Similarity=0.362 Sum_probs=125.2
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEEec
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 460 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v~~ 460 (719)
.++++.|.+...+.+.+.+. .....+++|+||||||||++++++|..+ +.+++.++.
T Consensus 176 ~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 46677888775555444332 2334569999999999999999999987 678888888
Q ss_pred cchh--hhccCCchhhHHHHHHHHHh-CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 461 PELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 461 ~~l~--~~~~g~se~~i~~~f~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
..+. .+|.|+.++.++.+|+.+.. ..++||||||++.+.+.++.. +. ...-+.|... ...+.+.+||
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-----~~-~d~~~~lkp~----l~~g~l~~Ig 312 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-----GA-MDAGNMLKPA----LARGELHCVG 312 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-----cc-hhHHHHhcch----hhcCCCeEEE
Confidence 8776 57899999999999988644 568999999999998765322 11 1122223222 2456799999
Q ss_pred ecCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCC
Q 005014 538 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP 581 (719)
Q Consensus 538 atn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~ 581 (719)
||+..+ .+|+|+.| ||+ .|+++.|+.+++..|++.......
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 999976 48999999 998 688999999999999988775543
No 111
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.57 E-value=1.5e-14 Score=170.64 Aligned_cols=183 Identities=22% Similarity=0.360 Sum_probs=131.7
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEEe
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 459 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v~ 459 (719)
-.++++.|.+.....+.+.+. .....+++|+||||||||++++.+|..+ +..++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 356778888876555444322 2234568999999999999999999875 24577777
Q ss_pred ccchh--hhccCCchhhHHHHHHHHHh-CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEE
Q 005014 460 GPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 536 (719)
Q Consensus 460 ~~~l~--~~~~g~se~~i~~~f~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 536 (719)
...+. .+|.|+.+..++.+|+.++. ..++|||||||+.+.+.++.. +. . .+-+.|+..| ..+.+.+|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~-~~-~----d~~n~Lkp~l----~~G~l~~I 320 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA-GQ-G----DAANLLKPAL----ARGELRTI 320 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc-cc-c----cHHHHhhHHh----hCCCeEEE
Confidence 77765 36899999999999999865 457899999999998765432 11 1 1223333333 35678999
Q ss_pred EecCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-----CccCHHHHHHHccCC
Q 005014 537 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-----KDVDLRALAKYTQGF 598 (719)
Q Consensus 537 ~atn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-----~~~d~~~la~~~~~~ 598 (719)
+||+..+ .+||||.| ||. .|.+++|+.+++..||+...+..... .+..+..++..+.+|
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 9998743 48999999 996 89999999999999987666543211 233466666666655
No 112
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.57 E-value=7.1e-14 Score=153.80 Aligned_cols=180 Identities=27% Similarity=0.425 Sum_probs=124.1
Q ss_pred CccccccccHHHHHH---hhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhh
Q 005014 390 VNWEDIGGLENVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 466 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~---l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 466 (719)
.+++++.|.+.+... |...+.. ....+++|+||||||||++|+++|+..+..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 457888888877544 5555431 123469999999999999999999999999999987532
Q ss_pred ccCCchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEec--C
Q 005014 467 WFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--N 540 (719)
Q Consensus 467 ~~g~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~at--n 540 (719)
+...++.+++.+. .....+|||||+|.+.. ...+.|+..++. ..+++|++| |
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCCC
Confidence 2345666666653 23567999999998732 234566666653 346667665 3
Q ss_pred CCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccC--CC-C-CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 541 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS--PV-S-KDVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 541 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~--~~-~-~~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
....+++++++ |+ .++.|++++.++...+++..+... ++ . .+..++.+++.+. -+.+.+.+++..+.
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~-Gd~R~aln~Le~~~ 201 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLAN-GDARRALNLLELAA 201 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34588999998 88 689999999999999999887542 11 1 1122455666553 35555556665554
No 113
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=8.6e-14 Score=153.73 Aligned_cols=183 Identities=20% Similarity=0.308 Sum_probs=128.8
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
+.+|+++.|++.+++.|...+... ..+.++||+|||||||||+|+++|+.++.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 457899999999999888765421 23456999999999999999999998754
Q ss_pred ---------eEEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 454 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 454 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
.++.++++.- ..-..++.+.+.+... ...|+|+||+|.+. ....+.|
T Consensus 78 ~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~~~L 137 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAFNAL 137 (472)
T ss_pred HHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHHHHH
Confidence 3445544321 1234466666655432 34699999999973 2346778
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~s 599 (719)
|..|+... ..+++|++|+.|+.+.+++.+ |+. ++.|.+++.++...+++..++..++. .+..+..|++.+.| +
T Consensus 138 Lk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-d 211 (472)
T PRK14962 138 LKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-G 211 (472)
T ss_pred HHHHHhCC--CcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 88887543 456777777778899999998 885 89999999999999999988765543 22335666666543 4
Q ss_pred HHHHHHHHHH
Q 005014 600 GADITEICQR 609 (719)
Q Consensus 600 g~di~~~~~~ 609 (719)
.+++-+.+..
T Consensus 212 lR~aln~Le~ 221 (472)
T PRK14962 212 LRDALTMLEQ 221 (472)
T ss_pred HHHHHHHHHH
Confidence 4454444443
No 114
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.57 E-value=7.3e-14 Score=152.02 Aligned_cols=203 Identities=23% Similarity=0.275 Sum_probs=128.6
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC---------CeEEEEeccch
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPEL 463 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~---------~~~i~v~~~~l 463 (719)
+++.|-+...+.|...+...+ . + ..+..++|+||||||||++++++++++. ..++++++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~------~--~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL------R--G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH------c--C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 467777777777766543211 1 1 2335699999999999999999998752 56888888654
Q ss_pred hhh----------cc--CC-------c-hhhHHHHHHHHH-hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHH
Q 005014 464 LTM----------WF--GE-------S-EANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 522 (719)
Q Consensus 464 ~~~----------~~--g~-------s-e~~i~~~f~~a~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~ 522 (719)
.+. .. |. + .+....+++... ...+.||+|||+|.+... ...++.+|+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhHhc
Confidence 321 11 11 1 122344555443 345789999999999621 1234555554
Q ss_pred HhcC-CCCCCcEEEEEecCCCC---CCCcccCCCCCcc-eEEEeCCCCHHHHHHHHHHHhccCCCC---CccCHHHHHHH
Q 005014 523 EMDG-MSAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEESRLQIFKACLRKSPVS---KDVDLRALAKY 594 (719)
Q Consensus 523 ~ld~-~~~~~~v~vi~atn~~~---~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~~~~~~~~---~~~d~~~la~~ 594 (719)
..+. -....++.+|+++|.++ .+++.+.+ ||. ..++|++++.++..+|++..++..... .+.-++.++..
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 4221 12335789999999886 57888877 775 689999999999999999998632111 12223344444
Q ss_pred ccC--CCHHHHHHHHHHHHHHHHHH
Q 005014 595 TQG--FSGADITEICQRACKYAIRE 617 (719)
Q Consensus 595 ~~~--~sg~di~~~~~~A~~~a~~~ 617 (719)
... -..+.+.++|+.|...|..+
T Consensus 233 ~~~~~Gd~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 233 AAQEHGDARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 331 23455566888888877654
No 115
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.57 E-value=3.6e-14 Score=156.10 Aligned_cols=173 Identities=21% Similarity=0.335 Sum_probs=119.9
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccchhhhccCCch-hhHHHHHHHHHhCCCEEEEEeccchhhc
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIAT 500 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~se-~~i~~~f~~a~~~~p~il~iDEid~l~~ 500 (719)
..+++||||+|+|||+|++++++++ +..++++++.++...+..... ..+..+.+..+ .+.+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3569999999999999999999886 567889998887665443211 12222223333 247999999999854
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC---CCcccCCCCCcc--eEEEeCCCCHHHHHHHHHH
Q 005014 501 QRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKA 575 (719)
Q Consensus 501 ~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~ 575 (719)
++ .....|+..++.+...++.+||++++.|.. +++.+.+ ||. ..+.+++|+.++|..|++.
T Consensus 214 ~~------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 KE------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CH------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 31 123345555555434445566666666654 5678887 886 5799999999999999999
Q ss_pred HhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 005014 576 CLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIR 616 (719)
Q Consensus 576 ~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~ 616 (719)
.++..++. ++..++.+|+... -+.+++..++......|..
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASL 320 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 99876554 2333667777665 4788888888877666643
No 116
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.57 E-value=2.7e-14 Score=158.96 Aligned_cols=174 Identities=21% Similarity=0.315 Sum_probs=120.3
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcc
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 501 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~ 501 (719)
.++++||||||||||+|++++++++ +..++++++.++...+..........-|..... .+.+|+|||++.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 3569999999999999999999987 456889999888765543322211222322222 4579999999998543
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC---CCcccCCCCCcc--eEEEeCCCCHHHHHHHHHHH
Q 005014 502 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKAC 576 (719)
Q Consensus 502 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 576 (719)
+ .....|+..++.+...++.+||+++..|.. +++++.+ ||. .++.+++|+.++|..|++..
T Consensus 227 ~------------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 227 E------------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred H------------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHH
Confidence 2 123455555555544445566666666654 6788887 886 58999999999999999999
Q ss_pred hccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 005014 577 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIR 616 (719)
Q Consensus 577 ~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~ 616 (719)
+...++. ++.-++.||+... -+.++|..++......+..
T Consensus 293 ~~~~~~~l~~e~l~~ia~~~~-~~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 293 AEEEGIDLPDEVLEFIAKNIT-SNVRELEGALNRLIAYASL 332 (450)
T ss_pred HHHcCCCCCHHHHHHHHcCcC-CCHHHHHHHHHHHHHHHHh
Confidence 9765543 2223666666655 3778888888777665543
No 117
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=5.6e-14 Score=152.55 Aligned_cols=183 Identities=20% Similarity=0.258 Sum_probs=129.7
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
..+|+++.|++.+.+.|...+.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 45789999999999988876642 1234458999999999999999999987652
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.+++.. ...-..++.+.+.+. .....|+||||+|.+. ....+.|
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NAL 141 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNAL 141 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHH
Confidence 23333211 111334565555443 3446799999999973 3467889
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~s 599 (719)
|..|+. ....+++|++|+.++.|.+++++ |+. +++|.+++.++....++..+.+.++. .+..+..+++.++| +
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d 215 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-S 215 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-h
Confidence 998875 34578888999999999999998 885 78999999999889998888766553 22335556655553 4
Q ss_pred HHHHHHHHHH
Q 005014 600 GADITEICQR 609 (719)
Q Consensus 600 g~di~~~~~~ 609 (719)
.++.-+++..
T Consensus 216 ~RdAL~lLeq 225 (484)
T PRK14956 216 VRDMLSFMEQ 225 (484)
T ss_pred HHHHHHHHHH
Confidence 4554445443
No 118
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.55 E-value=1.3e-13 Score=151.68 Aligned_cols=203 Identities=24% Similarity=0.325 Sum_probs=129.2
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccchhh--
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT-- 465 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~-- 465 (719)
+.+.|-++..+.|...+...+ . + ..+..++|+||||||||++++.+++++ +..++++++....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~------~--~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPAL------R--G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHh------C--C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 345555655555554442111 0 1 223458999999999999999999876 46788998864322
Q ss_pred --------hccC-------Cc-hhhHHHHHHHHHh-CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC
Q 005014 466 --------MWFG-------ES-EANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 528 (719)
Q Consensus 466 --------~~~g-------~s-e~~i~~~f~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~ 528 (719)
...+ .+ ......+++.... ..+.||+|||+|.+.... ...++..|+..++...
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhccC
Confidence 1112 11 1223333333332 456899999999987211 1246777777666553
Q ss_pred CCCcEEEEEecCCCC---CCCcccCCCCCcc-eEEEeCCCCHHHHHHHHHHHhccCC---CCCccCHHHHHHHccCCC--
Q 005014 529 AKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEESRLQIFKACLRKSP---VSKDVDLRALAKYTQGFS-- 599 (719)
Q Consensus 529 ~~~~v~vi~atn~~~---~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~d~~~la~~~~~~s-- 599 (719)
. .++.+|+++|.++ .+++.+.+ ||. ..|+|++++.++..+|++..++... .-.+..++.+++.+.+.+
T Consensus 171 ~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 G-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred C-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2 3788899988764 56777765 663 6789999999999999999886431 112333566777775433
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005014 600 GADITEICQRACKYAIRE 617 (719)
Q Consensus 600 g~di~~~~~~A~~~a~~~ 617 (719)
.+.+-.+|..|+..|..+
T Consensus 248 ~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 248 ARVAIDLLRRAGLIAERE 265 (394)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 344557888887777654
No 119
>PRK04195 replication factor C large subunit; Provisional
Probab=99.54 E-value=7.1e-14 Score=156.77 Aligned_cols=191 Identities=25% Similarity=0.336 Sum_probs=133.2
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 468 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 468 (719)
+.+++++.|.+.+++.|..++..... | .+++++||+||||||||++|+++|++++..++.+++++..+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 45689999999999999887643111 1 23577999999999999999999999999999999887532
Q ss_pred CCchhhHHHHHHHHHh------CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005014 469 GESEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 542 (719)
Q Consensus 469 g~se~~i~~~f~~a~~------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~ 542 (719)
...++.+...+.. ..+.+|+|||+|.+..+. ....++.|+..++. .+..+|+++|.+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 1233333332221 246799999999985421 11234566666652 234567788998
Q ss_pred CCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 005014 543 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYA 614 (719)
Q Consensus 543 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a 614 (719)
..+.+..+| +....|.|++|+.+++..+++..+.+.++. .+..+..|++.+ +.|++.+++.....+
T Consensus 141 ~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ain~Lq~~a 207 (482)
T PRK04195 141 YDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRSAINDLQAIA 207 (482)
T ss_pred cccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHh
Confidence 888874444 334689999999999999999999776654 223355566554 458888777665533
No 120
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.54 E-value=3.6e-14 Score=150.31 Aligned_cols=176 Identities=26% Similarity=0.413 Sum_probs=128.6
Q ss_pred cccccHHHHHHhhhccccCCCChhhhhhhcC-CCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh-hccC-C
Q 005014 394 DIGGLENVKRELQETVQYPVEHPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 470 (719)
Q Consensus 394 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-~~~g-~ 470 (719)
.+.|++++|+.+..++............... ..+.++||+||||||||++|+++|..++.+|+.++++++.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3789999999987766321111000000000 12467999999999999999999999999999999998885 6998 4
Q ss_pred chhhHHHHHHHHH-------------------------------------------------------------------
Q 005014 471 SEANVREIFDKAR------------------------------------------------------------------- 483 (719)
Q Consensus 471 se~~i~~~f~~a~------------------------------------------------------------------- 483 (719)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4677777777661
Q ss_pred ---h--------------------------------------------------------------------CCCEEEEE
Q 005014 484 ---Q--------------------------------------------------------------------SAPCVLFF 492 (719)
Q Consensus 484 ---~--------------------------------------------------------------------~~p~il~i 492 (719)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC--------CCCCcEEEEEecC----CCCCCCcccCCCCCcceEEE
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM--------SAKKTVFIIGATN----RPDIIDPALLRPGRLDQLIY 560 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~--------~~~~~v~vi~atn----~~~~ld~allrpgRf~~~i~ 560 (719)
||||+++.+.+++ ..+-...-|...||..++|- .+.+++++||+-. .|+.|-|.|. |||..++.
T Consensus 256 DEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 9999999875432 22233445888999999983 2346788888764 4666778887 59999999
Q ss_pred eCCCCHHHHHHHH
Q 005014 561 IPLPDEESRLQIF 573 (719)
Q Consensus 561 ~~~p~~~~r~~Il 573 (719)
+.+++.++..+||
T Consensus 332 L~~L~~~dL~~IL 344 (443)
T PRK05201 332 LDALTEEDFVRIL 344 (443)
T ss_pred CCCCCHHHHHHHh
Confidence 9999999999988
No 121
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=5.4e-14 Score=151.80 Aligned_cols=185 Identities=23% Similarity=0.337 Sum_probs=127.9
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe----------------
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------------- 454 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~---------------- 454 (719)
.|++|+|++.+++.|++.+.....+. ..++...+.++||+||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 58999999999999999887654322 22344456789999999999999999999876432
Q ss_pred -------EEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHH
Q 005014 455 -------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 523 (719)
Q Consensus 455 -------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ 523 (719)
+..+.... .. -.-..++.+++.+... ...|+||||+|.+.. ...|.||+.
T Consensus 80 ~~~~hpD~~~i~~~~---~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~ 140 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---LS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKA 140 (394)
T ss_pred hcCCCCCEEEecccc---cc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHH
Confidence 11121110 00 1234578888877543 346999999999832 345888998
Q ss_pred hcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHH
Q 005014 524 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADI 603 (719)
Q Consensus 524 ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di 603 (719)
|+.-. ...++|+ +|+.++.+.|++++ |+ ..++|++|+.++...++.... ++. ......++..+.|..++.+
T Consensus 141 LEep~-~~~~fIL-~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VEEPP-PRTVWLL-CAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred hhcCC-CCCeEEE-EECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 88642 2344444 45448999999998 88 599999999999887776322 232 3345677888888777655
Q ss_pred HHH
Q 005014 604 TEI 606 (719)
Q Consensus 604 ~~~ 606 (719)
.-+
T Consensus 212 ~l~ 214 (394)
T PRK07940 212 RLA 214 (394)
T ss_pred HHh
Confidence 443
No 122
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.54 E-value=3.2e-13 Score=144.28 Aligned_cols=191 Identities=24% Similarity=0.374 Sum_probs=133.0
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
.+.+.+|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|++++..+..++++.+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 345568999999999999998877542111 134568999999999999999999999998887776654321
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc----------------CCCc
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 256 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~----------------~~~~ 256 (719)
...+..++... ..+++|||||++.+.... + ..+...++... .-++
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-------~----e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPVV-------E----EILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcchHH-------H----HHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 12333444332 346799999999885321 1 12333333221 1134
Q ss_pred EEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHH
Q 005014 257 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 333 (719)
Q Consensus 257 vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 333 (719)
+.+|++|+.+..+++++++ ||...+.++.|+.+++.+|++.......+. ++..+..++..+.|+. +.+..++..
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~ 225 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRR 225 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHH
Confidence 7788999999999999987 898889999999999999998776544332 2334788888888864 444444444
No 123
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.5e-13 Score=135.68 Aligned_cols=181 Identities=25% Similarity=0.404 Sum_probs=134.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
.+.+-.|++..|.++.+++|.-++....... ....|+||+||||.||||||+.+|+++|..+...+++.+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 3455678999999999999887776543332 34468999999999999999999999999988887776532
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC----------------CCc
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RAH 256 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~----------------~~~ 256 (719)
...+-.++.... ...||||||||.+.+. +-+.|...|+.+.- -++
T Consensus 91 ------~gDlaaiLt~Le--~~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ------PGDLAAILTNLE--EGDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------hhhHHHHHhcCC--cCCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 223344444433 3479999999999754 22345555554321 136
Q ss_pred EEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCC
Q 005014 257 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 322 (719)
Q Consensus 257 vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 322 (719)
+.+||||.+...+...|+. ||.....+...+.++..+|+....+.+.+. ++.....+|+++.|.
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 8899999999999999997 999999999999999999998766555443 233467788888774
No 124
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.53 E-value=4e-13 Score=142.45 Aligned_cols=187 Identities=23% Similarity=0.346 Sum_probs=128.4
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccc
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 197 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~ 197 (719)
+|+++.|.++.+++|..++...... -..+.+++|+||||||||++|+++|.+++..+..+.+..+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5789999999999998887542211 123467999999999999999999999998776665543211
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc----------------CCCcEEEEE
Q 005014 198 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHVIVIG 261 (719)
Q Consensus 198 ~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~----------------~~~~vivI~ 261 (719)
...+...+.. ...+.+|||||++.+.+.. ...|...++... ....+.+|+
T Consensus 69 -~~~l~~~l~~--~~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTN--LEEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHh--cccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 1122222222 2346799999999886421 122333333221 113478889
Q ss_pred ecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHH
Q 005014 262 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEA 334 (719)
Q Consensus 262 atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 334 (719)
+|+.+..+++++++ ||...+.+.+|+.++..++++......... ++..+..+++.+.|+. +.+..++..+
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 99999999999987 898889999999999999998776533322 2334778888888865 4445555543
No 125
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=5.3e-14 Score=167.47 Aligned_cols=182 Identities=22% Similarity=0.374 Sum_probs=132.9
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEEec
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 460 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v~~ 460 (719)
.++.+.|.+...+.+.+.+. .+..+.++|+||||||||++++++|..+ +.+++.++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 56677788776555544332 2334568999999999999999999885 567888887
Q ss_pred cchh--hhccCCchhhHHHHHHHHHhC-CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 461 PELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 461 ~~l~--~~~~g~se~~i~~~f~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
..+. .+|.|+.++.++.+|+.+... .++|||||||+.+.+.+... +. ....+.|... ...+.+.+|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-----~~-~d~~~~Lk~~----l~~g~i~~Ig 307 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-----GA-MDAGNMLKPA----LARGELHCIG 307 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-----ch-hHHHHHhchh----hhcCceEEEE
Confidence 7775 578999999999999988653 58999999999998654321 11 1223333322 3456799999
Q ss_pred ecCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc-----CHHHHHHHccCC
Q 005014 538 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-----DLRALAKYTQGF 598 (719)
Q Consensus 538 atn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-----d~~~la~~~~~~ 598 (719)
+|+..+ .+|+|+.| ||. .|+++.|+.+++..|++.+..+......+ .+...+..+.+|
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 999864 57999999 997 68999999999999999887765544332 345555555544
No 126
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.2e-13 Score=151.61 Aligned_cols=186 Identities=20% Similarity=0.292 Sum_probs=135.8
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 45799999999999999887652 233467899999999999999999998754
Q ss_pred ---------eEEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 454 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 454 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
.++.+++++- ..-..+|.+...+.. ....|+||||+|.|. ....+.|
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A~NAL 138 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THSFNAL 138 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 2344444321 123456666655432 345799999999873 2356888
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~s 599 (719)
|..|+... ..+.+|++|+.+..+.+.+++ |+ .++.|.+++.++....++..+++.++.- +..+..+++.+.| +
T Consensus 139 LKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888643 456777778888888888886 88 4999999999999999999887766542 2336667777654 7
Q ss_pred HHHHHHHHHHHHH
Q 005014 600 GADITEICQRACK 612 (719)
Q Consensus 600 g~di~~~~~~A~~ 612 (719)
.+++.+++..+..
T Consensus 213 LRdALnLLDQaIa 225 (702)
T PRK14960 213 LRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766553
No 127
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.9e-13 Score=146.27 Aligned_cols=186 Identities=22% Similarity=0.319 Sum_probs=132.1
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
+.+|+++.|++.+++.|...+.. + +.+..++|+||||+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45799999999999998876642 1 234568999999999999999999987532
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.++++. ...-..++.+.+.+... ...|+||||+|.+. ....+.|
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naL 139 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNAL 139 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHH
Confidence 22222211 01234466666655432 34699999999873 2356778
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~s 599 (719)
|..|+... ..+.+|++|+.++.+.+++.+ |+ ..++|++|+.++...+++..+++.+.. .+..+..++..+.| +
T Consensus 140 Lk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~ 213 (363)
T PRK14961 140 LKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S 213 (363)
T ss_pred HHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88887643 356667777878889888887 88 588999999999999999988776543 23345667777764 7
Q ss_pred HHHHHHHHHHHHH
Q 005014 600 GADITEICQRACK 612 (719)
Q Consensus 600 g~di~~~~~~A~~ 612 (719)
.+++.+++..+..
T Consensus 214 ~R~al~~l~~~~~ 226 (363)
T PRK14961 214 MRDALNLLEHAIN 226 (363)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766643
No 128
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.52 E-value=4.6e-14 Score=167.59 Aligned_cols=185 Identities=26% Similarity=0.379 Sum_probs=136.5
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEEe
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 459 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v~ 459 (719)
-.|+.+.|.+...+.+.+.+. .+.+++++|+||||||||++|+.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 357778888877777766543 2345679999999999999999999886 36789999
Q ss_pred ccchh--hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 460 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 460 ~~~l~--~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
...++ .+|.|+.++.++.+|+.+....++||||||||.+.+.++.. +. . .+-+.|...+ ..+.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~--~---~~a~lLkp~l----~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA--I---DAANILKPAL----ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc--c---cHHHHhHHHH----hCCCcEEEE
Confidence 98887 58999999999999999988888999999999998765322 11 1 1222222222 356689999
Q ss_pred ecCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhcc----CCCC-CccCHHHHHHHccCCCH
Q 005014 538 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK----SPVS-KDVDLRALAKYTQGFSG 600 (719)
Q Consensus 538 atn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~----~~~~-~~~d~~~la~~~~~~sg 600 (719)
+|+..+ ..||++.| ||. .|.++.|+.++...|++..... ..+. .+.-+..++..+.+|-+
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 999764 47999999 997 6899999999999998765432 2222 22335666666666543
No 129
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=1.5e-13 Score=151.14 Aligned_cols=170 Identities=13% Similarity=0.217 Sum_probs=111.4
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccC
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 503 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~ 503 (719)
.++++||||+|+|||+|++++++++ +..+++++..++...+.......-...|.... ..+.+++|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 3569999999999999999999876 57788888877765443221111122344433 245799999999975421
Q ss_pred CCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC---CCCcccCCCCCcc--eEEEeCCCCHHHHHHHHHHHhc
Q 005014 504 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLR 578 (719)
Q Consensus 504 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~ 578 (719)
.....|+..++.+...++.+|+++++.|. .+++++.+ ||. ..+.+++|+.++|..|++..+.
T Consensus 219 -----------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 219 -----------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred -----------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 12233444444333333455555555554 56788888 885 7889999999999999999998
Q ss_pred cCCCCCccC-HHHHHHHccCCCHHHHHHHHHHHHH
Q 005014 579 KSPVSKDVD-LRALAKYTQGFSGADITEICQRACK 612 (719)
Q Consensus 579 ~~~~~~~~d-~~~la~~~~~~sg~di~~~~~~A~~ 612 (719)
..++.-+.+ ++.++.... -+.+++.+.+...+.
T Consensus 286 ~~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~~ 319 (445)
T PRK12422 286 ALSIRIEETALDFLIEALS-SNVKSLLHALTLLAK 319 (445)
T ss_pred HcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 766543222 344555444 356777776666643
No 130
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.4e-13 Score=154.41 Aligned_cols=185 Identities=22% Similarity=0.278 Sum_probs=132.7
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeE-------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 455 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~------------- 455 (719)
..+|++|.|++.+++.|+..+.. -+.+..+||+||||||||++|+++|+.+++..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 45799999999999998877642 12345579999999999999999999986531
Q ss_pred -----------EEEeccchhhhccCCchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 456 -----------ISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 456 -----------i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
+.+++.+ ...-..+|.+.+.+. .....|+||||+|.|. ....+.|
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNAL 139 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNAL 139 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 1122110 011234555555443 2345799999999983 4568999
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~s 599 (719)
|..|+.. ...+.+|++|+.+..|-+.+++ |+ .++.|.+++.++....++..+...++.- +..+..|++.+.| +
T Consensus 140 LKtLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d 213 (944)
T PRK14949 140 LKTLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-S 213 (944)
T ss_pred HHHHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999864 3456677778888888889888 88 5899999999999999998887654432 2236667777664 6
Q ss_pred HHHHHHHHHHHH
Q 005014 600 GADITEICQRAC 611 (719)
Q Consensus 600 g~di~~~~~~A~ 611 (719)
.+++.++|..|.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 778788887655
No 131
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-13 Score=151.07 Aligned_cols=164 Identities=24% Similarity=0.380 Sum_probs=128.2
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEech------hhh--
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIM-- 191 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~------~l~-- 191 (719)
+|--||++.+++|.+++...... |-..++-+||+||||+|||++++.||..+|..|+.++-. ++.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46789999999999998753222 345677899999999999999999999999999877643 332
Q ss_pred -hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-------------CCcE
Q 005014 192 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-------------RAHV 257 (719)
Q Consensus 192 -~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~-------------~~~v 257 (719)
..|+|....++-+.++....+.| +++|||||.+....++.+. +.|+.++|.-+. -.+|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhhccccccchhhe
Confidence 25778888888888888888888 8889999999854433332 455666653221 2479
Q ss_pred EEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 258 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 258 ivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
++|+|.|..+.|++.|+. |+ ..|+++=+..++...|.+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999997 77 668999899999999988764
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=1.7e-13 Score=151.01 Aligned_cols=172 Identities=19% Similarity=0.269 Sum_probs=115.2
Q ss_pred cceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccchhhhccCCc-hhhHHHHHHHHHhCCCEEEEEeccchhhcc
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSIATQ 501 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~s-e~~i~~~f~~a~~~~p~il~iDEid~l~~~ 501 (719)
.+++||||||||||+|++++++++ +..++++++.++...+.... ...+.. |.......+.+|+|||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999985 45788899888766553211 112222 32222235789999999998542
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC---CCcccCCCCCc--ceEEEeCCCCHHHHHHHHHHH
Q 005014 502 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRL--DQLIYIPLPDEESRLQIFKAC 576 (719)
Q Consensus 502 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~---ld~allrpgRf--~~~i~~~~p~~~~r~~Il~~~ 576 (719)
. .....|+..++.+...++.+||++++.|.. +++.+.+ || ..++.+++||.+.|..|++..
T Consensus 210 ~------------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 T------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred H------------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1 122344444554444445566666666664 4567777 76 467889999999999999999
Q ss_pred hccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 005014 577 LRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAI 615 (719)
Q Consensus 577 ~~~~~~~~-~~d~~~la~~~~~~sg~di~~~~~~A~~~a~ 615 (719)
+...++.- +.-++.||+... -+.++|..++......+.
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~-~~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVD-DNLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHhcCCCCCHHHHHHHHhccc-cCHHHHHHHHHHHHHHHH
Confidence 87654432 222566666655 367888888877655443
No 133
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=3.2e-13 Score=150.48 Aligned_cols=172 Identities=15% Similarity=0.281 Sum_probs=117.3
Q ss_pred cceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhccc
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 502 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r 502 (719)
+.++|||++|||||+|++++++++ +..++++++.++...+...........|..-.. .+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 459999999999999999999986 467899999888876654322222233443322 35899999999986432
Q ss_pred CCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC-C---CCCCcccCCCCCc--ceEEEeCCCCHHHHHHHHHHH
Q 005014 503 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-P---DIIDPALLRPGRL--DQLIYIPLPDEESRLQIFKAC 576 (719)
Q Consensus 503 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~-~---~~ld~allrpgRf--~~~i~~~~p~~~~r~~Il~~~ 576 (719)
.....|+..++.+...++.+|| |+|+ | ..+++.|.+ || ..++.+.+||.+.|..||+..
T Consensus 394 ------------~tqeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 394 ------------STQEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred ------------HHHHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHH
Confidence 1123444445544444444454 5555 4 357888888 87 467799999999999999999
Q ss_pred hccCCCCCccC-HHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 005014 577 LRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIR 616 (719)
Q Consensus 577 ~~~~~~~~~~d-~~~la~~~~~~sg~di~~~~~~A~~~a~~ 616 (719)
+....+.-+.+ ++.|+.... -+.++|..++......+..
T Consensus 459 a~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~ 498 (617)
T PRK14086 459 AVQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASL 498 (617)
T ss_pred HHhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh
Confidence 98776653333 555666554 3678888877776554443
No 134
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.50 E-value=3.3e-13 Score=139.57 Aligned_cols=149 Identities=32% Similarity=0.520 Sum_probs=109.7
Q ss_pred cCCCCccccccchHHHHH---HHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechh
Q 005014 113 RLDEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 189 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~---~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~ 189 (719)
++.+-++++++|.+..+. -|++++.. ..-.+++|||||||||||||+.||+..+..|..+++..
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 456678999999887653 35555543 23347999999999999999999999999999988633
Q ss_pred hhhhcccchHHHHHHHHHHHHhc----CCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecC-
Q 005014 190 IMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN- 264 (719)
Q Consensus 190 l~~~~~g~~~~~l~~vf~~a~~~----~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn- 264 (719)
..-+.++.+++.++.. ...|||+||||.+-...+ ..|+-.+ .++.|++||+|.
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~v----E~G~iilIGATTE 141 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHV----ENGTIILIGATTE 141 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhh----cCCeEEEEeccCC
Confidence 2346788999988553 257999999998854432 2344444 356788887653
Q ss_pred CC-CCCCHHhhccCCCceEEEeCCCChHHHHHHHHH
Q 005014 265 RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 299 (719)
Q Consensus 265 ~~-~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~ 299 (719)
.| -.++++|++ |. +.+++.+.+.++-..+++.
T Consensus 142 NPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 142 NPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred CCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHH
Confidence 44 478999998 54 4578888888888888775
No 135
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=7.7e-13 Score=146.68 Aligned_cols=189 Identities=22% Similarity=0.307 Sum_probs=139.5
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe-------------
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 454 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~------------- 454 (719)
.+.+|+++.|++.+.+.|...+.. -+.+.++||+||||||||++|+++|+.+++.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 345799999999999988875532 1345679999999999999999999987542
Q ss_pred ---------------EEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHH
Q 005014 455 ---------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADR 515 (719)
Q Consensus 455 ---------------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 515 (719)
++.+++.. ..+...++.+.+.+... ...|++|||+|.+. ..
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~ 143 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KG 143 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HH
Confidence 11222110 12345678888777543 34699999999873 24
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHH
Q 005014 516 VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKY 594 (719)
Q Consensus 516 ~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~ 594 (719)
..+.||..|+.. ...+++|++|+.++.+.+++++ |+ .+++|.+++.++...+++..+++.++.-+ ..+..+++.
T Consensus 144 a~naLLk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 577888888853 4456777778888899999987 88 58999999999999999999987665422 336677877
Q ss_pred ccCCCHHHHHHHHHHHHHHH
Q 005014 595 TQGFSGADITEICQRACKYA 614 (719)
Q Consensus 595 ~~~~sg~di~~~~~~A~~~a 614 (719)
+.| +.+++.+++..+...+
T Consensus 219 s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMS 237 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhh
Confidence 764 8888888888776554
No 136
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=4.2e-13 Score=151.73 Aligned_cols=185 Identities=22% Similarity=0.314 Sum_probs=133.2
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 35799999999999998877642 1234558999999999999999999987652
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.+++.. . ..-..+|.+.+.+. .....|+||||+|.|. ....|.|
T Consensus 80 ~~i~~g~~~D~ieidaas----~--~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NAL 139 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS----R--TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNAL 139 (647)
T ss_pred HHHHcCCCCCceeecccc----c--CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHH
Confidence 23333321 0 11234555554443 3345799999999973 3467899
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~~~~~s 599 (719)
|+.|+.- ...+.+|++|+.++.|-+.+++ |+ ..++|.+++.++....++..++..++..+ ..+..+++.+.| +
T Consensus 140 LKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s 213 (647)
T PRK07994 140 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-S 213 (647)
T ss_pred HHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999864 3467777778888999899888 87 69999999999999999988876554422 335667776664 6
Q ss_pred HHHHHHHHHHHH
Q 005014 600 GADITEICQRAC 611 (719)
Q Consensus 600 g~di~~~~~~A~ 611 (719)
.++.-+++..|.
T Consensus 214 ~R~Al~lldqai 225 (647)
T PRK07994 214 MRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHHH
Confidence 676667765543
No 137
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.49 E-value=1.1e-12 Score=129.28 Aligned_cols=192 Identities=25% Similarity=0.386 Sum_probs=134.7
Q ss_pred ccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccc
Q 005014 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE 462 (719)
Q Consensus 386 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~ 462 (719)
....+.++++.|++..|+.|.+.....+. | .+..++||+|+.|||||+++|++..+. +..+|.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 34568899999999999999876543222 2 356779999999999999999999876 66788887766
Q ss_pred hhhhccCCchhhHHHHHHHHHh-CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC--CCCcEEEEEec
Q 005014 463 LLTMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGAT 539 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--~~~~v~vi~at 539 (719)
+.+ +..+++..+. ..+-|||+|++.. . ..+.-...|-..|||.. ...+|+|.+|+
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLsF--e-----------~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLSF--E-----------EGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCCC--C-----------CCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 632 4455555443 2456999998643 1 11233577778888864 35689999999
Q ss_pred CCCCCCCccc----------CC-----------CCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc-CH----HHHHH
Q 005014 540 NRPDIIDPAL----------LR-----------PGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DL----RALAK 593 (719)
Q Consensus 540 n~~~~ld~al----------lr-----------pgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-d~----~~la~ 593 (719)
|+.+.+.+.+ +. ..||..+|.|.+|+.++..+|++.++++.++.-+. ++ ...|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9865443211 11 23999999999999999999999999887766331 22 12333
Q ss_pred HccCCCHHHHHHHHH
Q 005014 594 YTQGFSGADITEICQ 608 (719)
Q Consensus 594 ~~~~~sg~di~~~~~ 608 (719)
.-.|.||+--.+.+.
T Consensus 229 ~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 229 RRGGRSGRTARQFID 243 (249)
T ss_pred HcCCCCHHHHHHHHH
Confidence 345667766555443
No 138
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.49 E-value=4.5e-13 Score=150.72 Aligned_cols=167 Identities=22% Similarity=0.352 Sum_probs=110.6
Q ss_pred eeeecCCCCchhHHHHHHHHHh----------CCeEEEEeccchhhhc----------cCC-------chhhHHHHHHHH
Q 005014 430 VLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMW----------FGE-------SEANVREIFDKA 482 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~----------~~~~i~v~~~~l~~~~----------~g~-------se~~i~~~f~~a 482 (719)
++|+|+||||||++++.+..++ ...+++|+|..+...+ .|. +...+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 5699999999999999998765 2567899986543221 011 223455666654
Q ss_pred H--hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC---CCCCCcccCCCCCcce
Q 005014 483 R--QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR---PDIIDPALLRPGRLDQ 557 (719)
Q Consensus 483 ~--~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~---~~~ld~allrpgRf~~ 557 (719)
. .....||+|||||.|..+ ...++-.|+.... ....+++|||++|. ++.|+|.+.+ ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 2 233579999999999642 1344444444332 23457999999986 5678888887 6653
Q ss_pred -EEEeCCCCHHHHHHHHHHHhccCC-CCCccCHHHHHHHccCCCHHHHH---HHHHHHHH
Q 005014 558 -LIYIPLPDEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADIT---EICQRACK 612 (719)
Q Consensus 558 -~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~d~~~la~~~~~~sg~di~---~~~~~A~~ 612 (719)
.|.|+||+.+++.+||+..+.... +-.+.-++.+|+.+...+| |++ .+|+.|+.
T Consensus 929 eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SG-DARKALDILRrAgE 987 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSG-DIRKALQICRKAFE 987 (1164)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHh
Confidence 488999999999999999987542 2223336666765543333 434 46666654
No 139
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=2.8e-13 Score=151.21 Aligned_cols=187 Identities=19% Similarity=0.233 Sum_probs=136.1
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
+.+|+++.|++.+++.|...+.. -..+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 45799999999999999887642 1234568999999999999999999987542
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.++++. ...-..+|.+.+.+.. ....|+||||+|.+. ....+.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~a~naL 139 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GHSFNAL 139 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HHHHHHH
Confidence 44444332 1123446666665432 345799999999983 2357889
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~s 599 (719)
|..|+... ..+.+|++|+.++.+.+.+++ |+ ..++|.+++.++....++..+++.++.- +..+..+++.+. -+
T Consensus 140 Lk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~-Gs 213 (509)
T PRK14958 140 LKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN-GS 213 (509)
T ss_pred HHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-Cc
Confidence 99988653 346677777888888888887 88 4889999999998888888887766542 233666777765 47
Q ss_pred HHHHHHHHHHHHHH
Q 005014 600 GADITEICQRACKY 613 (719)
Q Consensus 600 g~di~~~~~~A~~~ 613 (719)
.+++.+++..+...
T Consensus 214 lR~al~lLdq~ia~ 227 (509)
T PRK14958 214 VRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888888776543
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=2.1e-12 Score=146.22 Aligned_cols=187 Identities=25% Similarity=0.365 Sum_probs=137.8
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
+.+|+++.|++.+.+.|...+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 45799999999999999887652 123456899999999999999999988642
Q ss_pred ---------eEEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 454 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 454 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
+++.++++. +.+-..++.+...+.. ....|++|||+|.+. ....+.|
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naL 139 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNAL 139 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 334444321 1234567777777653 335799999999873 2357889
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~~~~~s 599 (719)
|..|+.. ...+++|++|+.++.+.+.+++ |+. .+.|++|+.++....++..+++.++.-+ ..+..++..+.| +
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988864 3456777777888999999887 885 7899999999999999998887665432 336667777765 7
Q ss_pred HHHHHHHHHHHHHH
Q 005014 600 GADITEICQRACKY 613 (719)
Q Consensus 600 g~di~~~~~~A~~~ 613 (719)
.++..+++..+...
T Consensus 214 ~R~al~~Ldq~~~~ 227 (559)
T PRK05563 214 MRDALSILDQAISF 227 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766543
No 141
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.47 E-value=6.6e-13 Score=153.18 Aligned_cols=181 Identities=24% Similarity=0.364 Sum_probs=119.6
Q ss_pred CCccccccccHHHHH---HhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 389 NVNWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
+.+++++.|.+.+.. .|...+.. ....+++|||||||||||+|+++|+..+..|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 356788889888763 34444321 122469999999999999999999999999988876421
Q ss_pred hccCCchhhHHHHHHHHH-----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 005014 466 MWFGESEANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 540 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~-----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn 540 (719)
..+.++.++..+. .....++||||||.+.. ...+.|+..++. ..+++|++|+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE~----g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------AQQDALLPWVEN----GTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------HHHHHHHHHhcC----ceEEEEEecC
Confidence 1223444444432 12457999999998732 223456655542 4577777664
Q ss_pred C--CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhcc-------CCCC-CccCHHHHHHHccCCCHHHHHHHHHHH
Q 005014 541 R--PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-------SPVS-KDVDLRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 541 ~--~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A 610 (719)
. ...+++++++ |+ .++.|++++.+++..|++..+.. ..+. .+.-++.|++... -+.+++.++++.|
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~-GD~R~lln~Le~a 221 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN-GDARSLLNALELA 221 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3 3568899998 75 47899999999999999998862 2222 1222455666553 3556666666665
Q ss_pred H
Q 005014 611 C 611 (719)
Q Consensus 611 ~ 611 (719)
.
T Consensus 222 ~ 222 (725)
T PRK13341 222 V 222 (725)
T ss_pred H
Confidence 4
No 142
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=1.3e-12 Score=140.52 Aligned_cols=188 Identities=21% Similarity=0.326 Sum_probs=121.2
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC-----CeEEEEeccch
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 463 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~-----~~~i~v~~~~l 463 (719)
+.+|+++.|.+.+++.|...+.. + ...+++|+||||||||++|+++++++. .+++.++++++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 44688899999999998876542 1 123599999999999999999999873 35678888765
Q ss_pred hhhc-------------cCC-------chhhHHHHHHHHHh-----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHH
Q 005014 464 LTMW-------------FGE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 518 (719)
Q Consensus 464 ~~~~-------------~g~-------se~~i~~~f~~a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~ 518 (719)
...+ .+. ....++.+.+.... ..+.+||+||+|.+.. ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------~~~~ 143 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------DAQQ 143 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------HHHH
Confidence 4221 111 01223333322222 2346999999998732 2344
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccC
Q 005014 519 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQG 597 (719)
Q Consensus 519 ~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~ 597 (719)
.|+..|+..... ..+|.+|+.+..+.+.+.+ |+ ..+.|++|+.++...+++..+++.++. .+..++.+++.+
T Consensus 144 ~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-- 216 (337)
T PRK12402 144 ALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-- 216 (337)
T ss_pred HHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--
Confidence 556666654332 3344455566677777776 76 478999999999999999988776654 223355566554
Q ss_pred CCHHHHHHHHHHHHH
Q 005014 598 FSGADITEICQRACK 612 (719)
Q Consensus 598 ~sg~di~~~~~~A~~ 612 (719)
+.+++.+++....
T Consensus 217 --~gdlr~l~~~l~~ 229 (337)
T PRK12402 217 --GGDLRKAILTLQT 229 (337)
T ss_pred --CCCHHHHHHHHHH
Confidence 3455555554443
No 143
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.6e-12 Score=146.31 Aligned_cols=187 Identities=19% Similarity=0.271 Sum_probs=137.2
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
..+|++++|++.+++.|...+.. -+.+.++||+||+|||||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 45799999999999999887652 1345679999999999999999999986532
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.++++. +.+...++.+++.+.. ....|+||||+|.+. ....+.|
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NAL 139 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAM 139 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHH
Confidence 12222211 1223467777766533 334799999998862 3457889
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~s 599 (719)
|..|+... ..+.+|++||.++.+.+.+++ |+ ..+.|++++.++....++..+++.++.- +..+..|++.+. -+
T Consensus 140 LKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-Gs 213 (709)
T PRK08691 140 LKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GS 213 (709)
T ss_pred HHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CC
Confidence 99988643 456777788888888888876 88 4788889999999999999998776542 223667777775 57
Q ss_pred HHHHHHHHHHHHHH
Q 005014 600 GADITEICQRACKY 613 (719)
Q Consensus 600 g~di~~~~~~A~~~ 613 (719)
.+++.+++..+...
T Consensus 214 lRdAlnLLDqaia~ 227 (709)
T PRK08691 214 MRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888776654
No 144
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.1e-12 Score=147.09 Aligned_cols=183 Identities=19% Similarity=0.277 Sum_probs=127.4
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
..+|++|.|++.+++.|...+.. + +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 45799999999999999887642 1 224569999999999999999999987542
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHH----HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.+++..- ..-..++.+.+.+ ......|+||||+|.+. ....+.|
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~naL 139 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAFNAL 139 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHHHHH
Confidence 334433210 0112334433222 23445799999999973 3356888
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~s 599 (719)
|..|+.. ...+++|++||.++.+.+.+++ |+. ++.|++++.++...+++..+.+.++. .+..+..+++.+.| +
T Consensus 140 Lk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-d 213 (624)
T PRK14959 140 LKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-S 213 (624)
T ss_pred HHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9888863 3467888888888888888887 885 78999999999999999888766543 22335666666653 4
Q ss_pred HHHHHHHHHH
Q 005014 600 GADITEICQR 609 (719)
Q Consensus 600 g~di~~~~~~ 609 (719)
.+++-+++..
T Consensus 214 lR~Al~lLeq 223 (624)
T PRK14959 214 VRDSMSLLGQ 223 (624)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 145
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.3e-12 Score=143.62 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=138.3
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
+.+|+++.|++.+++.|...+.. -+.+.++||+||+|+||||+|+.+|..+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 45799999999999999876542 134567999999999999999999986532
Q ss_pred ---------eEEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 454 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 454 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
.++.+++++- .+-..++.+.+.+... ...|++|||+|.+. ....+.|
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~NaL 136 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFNAL 136 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHHHH
Confidence 3455555321 1245577777766543 34699999999873 2457889
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~s 599 (719)
|..|+... ..+.+|++|+.++.+.+.+++ |+ ..+.|.+++.++....++..+++.++. .+..+..+++.+. .+
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~-Gs 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSS-GS 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 99998643 457777778888889888887 88 479999999999999999988776654 2334666777775 47
Q ss_pred HHHHHHHHHHHHHH
Q 005014 600 GADITEICQRACKY 613 (719)
Q Consensus 600 g~di~~~~~~A~~~ 613 (719)
.+++.+++..+...
T Consensus 211 lR~alslLdqli~y 224 (491)
T PRK14964 211 MRNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776554
No 146
>PLN03025 replication factor C subunit; Provisional
Probab=99.45 E-value=1.2e-12 Score=139.37 Aligned_cols=180 Identities=21% Similarity=0.232 Sum_probs=120.6
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC-----CeEEEEeccch
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 463 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~-----~~~i~v~~~~l 463 (719)
+.+++++.|.+++.+.|+..+.. + ...+++|+||||||||++|+++|+++. ..++.++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-----------G--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 45788999999999888765432 1 123599999999999999999999872 24666766654
Q ss_pred hhhccCCchhhHHHHHHH-HH------hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEE
Q 005014 464 LTMWFGESEANVREIFDK-AR------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 536 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f~~-a~------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 536 (719)
.+ -..++...+. +. ...+.|++|||+|.+.. ...+.|+..|+.... ...+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------------~aq~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------------GAQQALRRTMEIYSN--TTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------------HHHHHHHHHHhcccC--CceEE
Confidence 22 1223333221 11 12357999999999843 224556666664432 34466
Q ss_pred EecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHH
Q 005014 537 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 537 ~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A 610 (719)
.+||.++.+.+++.+ |+. .+.|++|+.++....++..+++.++. .+..+..++..+. +|++.+++..
T Consensus 134 l~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~----gDlR~aln~L 201 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD----GDMRQALNNL 201 (319)
T ss_pred EEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHH
Confidence 688888888889887 874 89999999999999999988776554 2233555555544 3555544433
No 147
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.4e-12 Score=145.24 Aligned_cols=183 Identities=23% Similarity=0.350 Sum_probs=127.8
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
...|+++.|++.+++.|...+.. -..+..+||||||||||||+|+++|+.+.+
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 45799999999999999877653 123445799999999999999999998743
Q ss_pred --------eEEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHH
Q 005014 454 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 521 (719)
Q Consensus 454 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 521 (719)
.++.+++++ ..+-..++.+.+.+.. ..+.|+||||+|.+. ...++.||
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naLL 137 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNALL 137 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHHH
Confidence 134444321 1123446666554433 346799999998752 34578888
Q ss_pred HHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCCH
Q 005014 522 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSG 600 (719)
Q Consensus 522 ~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~sg 600 (719)
..|+.. ...+++|.+||.++.+.+.+.+ |+. ++.|++|+.++....++..+++.++.- +..+..+++.+.| +.
T Consensus 138 k~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl 211 (504)
T PRK14963 138 KTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM 211 (504)
T ss_pred HHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888864 3456777788889999999987 875 899999999999999999887766542 2224555555543 44
Q ss_pred HHHHHHHHH
Q 005014 601 ADITEICQR 609 (719)
Q Consensus 601 ~di~~~~~~ 609 (719)
+++.++++.
T Consensus 212 R~aln~Lek 220 (504)
T PRK14963 212 RDAESLLER 220 (504)
T ss_pred HHHHHHHHH
Confidence 444444443
No 148
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.45 E-value=5.9e-12 Score=144.23 Aligned_cols=223 Identities=26% Similarity=0.374 Sum_probs=136.7
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEE
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 458 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v 458 (719)
..+|+++.|.+...+.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 45788899998877776544321 123469999999999999999998765 3578999
Q ss_pred eccchh-------hhccCCchhhH----HHHHHH----------HHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHH
Q 005014 459 KGPELL-------TMWFGESEANV----REIFDK----------ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 517 (719)
Q Consensus 459 ~~~~l~-------~~~~g~se~~i----~~~f~~----------a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~ 517 (719)
++..+. ..++|...... +..+.. .......+||+||++.|-. ...
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------~~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------LLQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------HHH
Confidence 987652 11222211111 111110 0112235999999988632 234
Q ss_pred HHHHHHhcCCC--------------------------CCCcEEEEEe-cCCCCCCCcccCCCCCcceEEEeCCCCHHHHH
Q 005014 518 NQLLTEMDGMS--------------------------AKKTVFIIGA-TNRPDIIDPALLRPGRLDQLIYIPLPDEESRL 570 (719)
Q Consensus 518 ~~ll~~ld~~~--------------------------~~~~v~vi~a-tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~ 570 (719)
..|+..|+.-. ....+++|++ |+.++.++++|++ ||. .++|++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 44555543210 1223555554 5668899999887 997 6789999999999
Q ss_pred HHHHHHhccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccH
Q 005014 571 QIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKA 649 (719)
Q Consensus 571 ~Il~~~~~~~~~~~-~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 649 (719)
.|++..+.+..+.- +.-++.|++.+ +.|+..-+++..+...+..+..... .......|+.
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~-----------------~~~~~~~I~~ 420 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAG-----------------KENDKVTITQ 420 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhc-----------------cCCCCeeECH
Confidence 99999998754321 22233444433 3666666666666655544331000 0011247899
Q ss_pred HHHHHHHhhcC
Q 005014 650 VHFEESMKYAR 660 (719)
Q Consensus 650 ~~~~~a~~~~~ 660 (719)
+|++++++.-+
T Consensus 421 edv~~~l~~~r 431 (615)
T TIGR02903 421 DDVYEVIQISR 431 (615)
T ss_pred HHHHHHhCCCc
Confidence 99999987643
No 149
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.8e-12 Score=151.26 Aligned_cols=185 Identities=19% Similarity=0.242 Sum_probs=130.4
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
..+|++|+|++.+++.|+..+.. -+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 45799999999999999877642 1234568999999999999999999998541
Q ss_pred ------------EEEEeccchhhhccCCchhhHHHHHHH----HHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHH
Q 005014 455 ------------FISVKGPELLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 518 (719)
Q Consensus 455 ------------~i~v~~~~l~~~~~g~se~~i~~~f~~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~ 518 (719)
++.+++... -.-..+|.+-+. .......|+||||+|.|. ....|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~N 138 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFN 138 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHH
Confidence 223322111 012334444333 233456799999999983 34578
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHccC
Q 005014 519 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQG 597 (719)
Q Consensus 519 ~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-d~~~la~~~~~ 597 (719)
.||+.|+... ..+++|++|+.++.|-+.+++ |+ .++.|.+++.++...+++..+++.++.-+. .+..|++...|
T Consensus 139 aLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8999998754 356777777888888888887 87 488999999999999999988776654222 24556666553
Q ss_pred CCHHHHHHHHHHHH
Q 005014 598 FSGADITEICQRAC 611 (719)
Q Consensus 598 ~sg~di~~~~~~A~ 611 (719)
+.+++.+++....
T Consensus 214 -dlR~Al~eLEKLi 226 (824)
T PRK07764 214 -SVRDSLSVLDQLL 226 (824)
T ss_pred -CHHHHHHHHHHHH
Confidence 6666666666544
No 150
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.5e-12 Score=146.52 Aligned_cols=187 Identities=20% Similarity=0.244 Sum_probs=132.3
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 45799999999999999887652 123445899999999999999999988653
Q ss_pred -----------eEEEEeccchhhhccCCchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHH
Q 005014 454 -----------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 518 (719)
Q Consensus 454 -----------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~ 518 (719)
.++.++++.. .+-..++.+-+.+. .....|++|||+|.+- ....|
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~N 136 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFN 136 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHH
Confidence 1223332211 01234454444432 2345699999999973 23678
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHccC
Q 005014 519 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQG 597 (719)
Q Consensus 519 ~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-d~~~la~~~~~ 597 (719)
.||..|+.. ...+++|++|+.++.|.+++++ |+ .+++|.+++.++....++..+++.++.-+- .+..+++.+.
T Consensus 137 ALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~- 210 (584)
T PRK14952 137 ALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG- 210 (584)
T ss_pred HHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 899999864 3467788888888999999987 86 589999999999999999988876654222 3445555554
Q ss_pred CCHHHHHHHHHHHHHH
Q 005014 598 FSGADITEICQRACKY 613 (719)
Q Consensus 598 ~sg~di~~~~~~A~~~ 613 (719)
-+.+++.+++..+...
T Consensus 211 GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 211 GSPRDTLSVLDQLLAG 226 (584)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 5777777777766543
No 151
>PRK06893 DNA replication initiation factor; Validated
Probab=99.44 E-value=9.4e-13 Score=133.04 Aligned_cols=159 Identities=13% Similarity=0.172 Sum_probs=101.0
Q ss_pred ceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCC
Q 005014 429 GVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 505 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~ 505 (719)
.++||||||||||+|++++|++. +....+++..+. ......+++..+ ...+|+|||++.+.+.+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 48999999999999999999885 233444443321 111123343333 34699999999985421
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCCCCc-EEEEEecCCCCCCC---cccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCC
Q 005014 506 VGDAGGAADRVLNQLLTEMDGMSAKKT-VFIIGATNRPDIID---PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP 581 (719)
Q Consensus 506 ~~~~~~~~~~~~~~ll~~ld~~~~~~~-v~vi~atn~~~~ld---~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~ 581 (719)
... ..|+..++.....++ ++|++++..|..++ |.+.++.+++..+.+++|+.++|..|++..+...+
T Consensus 108 ------~~~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 ------EWE---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ------HHH---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 112 234444444433333 44555666676554 88888455568899999999999999998886555
Q ss_pred CCC-ccCHHHHHHHccCCCHHHHHHHHHHH
Q 005014 582 VSK-DVDLRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 582 ~~~-~~d~~~la~~~~~~sg~di~~~~~~A 610 (719)
+.- +.-++.|++... -+.+.+.+++...
T Consensus 179 l~l~~~v~~~L~~~~~-~d~r~l~~~l~~l 207 (229)
T PRK06893 179 IELSDEVANFLLKRLD-RDMHTLFDALDLL 207 (229)
T ss_pred CCCCHHHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 442 223556666665 3566666666644
No 152
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.44 E-value=2.7e-12 Score=139.21 Aligned_cols=188 Identities=23% Similarity=0.355 Sum_probs=133.4
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC--------------
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 453 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~-------------- 453 (719)
.+..|+++.|.+.+++.|.+.+.. -..+..+|||||||+|||++|+++|..+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 346799999999999999876642 123456899999999999999999988642
Q ss_pred ----------eEEEEeccchhhhccCCchhhHHHHHHHHHhCC----CEEEEEeccchhhcccCCCCCCCCCchHHHHHH
Q 005014 454 ----------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 519 (719)
Q Consensus 454 ----------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ 519 (719)
+++.+++.+ ......++.+++.+...+ ..|+++||+|.+. ....+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~~~ 136 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAFNA 136 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHHHH
Confidence 233333321 112345777887765432 3599999998873 235678
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCC
Q 005014 520 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGF 598 (719)
Q Consensus 520 ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~~~~~ 598 (719)
||..++... ..+++|++||.++.+.+++.+ |+. .+.|++|+.++...+++..+++.++.-+ ..+..+++.+.|
T Consensus 137 Ll~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 137 LLKTLEEPP--EHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHHHHhCCc--cceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888887643 456777778888888888887 884 7899999999999999999987665422 335556666653
Q ss_pred CHHHHHHHHHHHHHH
Q 005014 599 SGADITEICQRACKY 613 (719)
Q Consensus 599 sg~di~~~~~~A~~~ 613 (719)
+.+.+.+.+..+...
T Consensus 211 ~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 211 SLRDALSLLDQLISF 225 (355)
T ss_pred ChHHHHHHHHHHHhh
Confidence 666666666655543
No 153
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.7e-12 Score=143.84 Aligned_cols=187 Identities=19% Similarity=0.315 Sum_probs=134.2
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
..+|+++.|++.+.+.|...+.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 35789999999999999887652 1234568999999999999999999987541
Q ss_pred ---------------EEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHH
Q 005014 455 ---------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADR 515 (719)
Q Consensus 455 ---------------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 515 (719)
++.+++.. ...-..++.+.+.+... ...|++|||+|.+. ..
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~ 139 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NT 139 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HH
Confidence 22222211 01233567776665432 24699999999973 23
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHH
Q 005014 516 VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKY 594 (719)
Q Consensus 516 ~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~ 594 (719)
..|.||..|+.. ...+.+|++|+.++.+.+.+++ |+ .+++|.+++.++....++..+++.++.-+ ..+..|++.
T Consensus 140 a~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 478888888863 3456677777788888888887 88 59999999999999999988877665432 236777777
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q 005014 595 TQGFSGADITEICQRACKY 613 (719)
Q Consensus 595 ~~~~sg~di~~~~~~A~~~ 613 (719)
+.| +.+++.+++..+...
T Consensus 215 s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 215 ARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred cCC-CHHHHHHHHHHHHHh
Confidence 764 777777777655443
No 154
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.43 E-value=1.4e-12 Score=138.89 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=108.7
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 468 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 468 (719)
+.+++++.|.+.+++.+...+.. + ..+..++|+||||+|||++|++++++.+.+++.+++++ .. +
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 45789999999999988877641 1 23445777999999999999999999998899998876 11 1
Q ss_pred CCchhhHHHHHHHH-HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc
Q 005014 469 GESEANVREIFDKA-RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 547 (719)
Q Consensus 469 g~se~~i~~~f~~a-~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~ 547 (719)
......+....... -...+.++||||+|.+.. ....+.|.+.|+... .++.+|++||.++.+++
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------------~~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------------ADAQRHLRSFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------------HHHHHHHHHHHHhcC--CCceEEEEcCChhhchH
Confidence 11111122211111 113568999999998721 112233444455433 34677889999999999
Q ss_pred ccCCCCCcceEEEeCCCCHHHHHHHHHHHh
Q 005014 548 ALLRPGRLDQLIYIPLPDEESRLQIFKACL 577 (719)
Q Consensus 548 allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 577 (719)
++.+ ||. .+.|+.|+.+++..+++.++
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9998 895 78999999999988877554
No 155
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.7e-12 Score=142.96 Aligned_cols=164 Identities=25% Similarity=0.357 Sum_probs=128.2
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEech------hhhh-
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIMS- 192 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~------~l~~- 192 (719)
.|--|+++.+++|.+++..-.+.. -..+.-+||+||||+|||+|++.||+.++..|+.+.-. ++.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 356899999999999987633221 23445699999999999999999999999999888642 3332
Q ss_pred --hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-------------CCcE
Q 005014 193 --KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-------------RAHV 257 (719)
Q Consensus 193 --~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~-------------~~~v 257 (719)
.|.|....++-+-+..+....| ++++||||.+..+..+.+. +.|+..+|.-+. -..|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhhe
Confidence 5778888888888888888888 8889999999877655443 345555553221 2479
Q ss_pred EEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 258 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 258 ivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
++|+|.|..+.++..|+. |. ..|.+.-.++.+..+|.+.|+
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 999999999999999987 77 678999999999999998764
No 156
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.42 E-value=9e-12 Score=124.51 Aligned_cols=180 Identities=22% Similarity=0.294 Sum_probs=125.2
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC------eEEEEecc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGP 461 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~------~~i~v~~~ 461 (719)
.+.+++++.|++.+.+.|...+.. .....+|||||||||||+.|+++|.++.. .+...+.+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 456789999999999999887642 22345999999999999999999999864 23444555
Q ss_pred chhhhccCCchhhHHHHHHHHHh----------CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCC
Q 005014 462 ELLTMWFGESEANVREIFDKARQ----------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK 531 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~~----------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 531 (719)
+-.+.-++ ..++ .-|..... .++.|++|||+|++.. ...+.|...|+.. ..
T Consensus 98 derGisvv--r~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts--------------daq~aLrr~mE~~--s~ 158 (346)
T KOG0989|consen 98 DERGISVV--REKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS--------------DAQAALRRTMEDF--SR 158 (346)
T ss_pred ccccccch--hhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhH--------------HHHHHHHHHHhcc--cc
Confidence 54433221 1111 12222211 1237999999999842 4567788888874 34
Q ss_pred cEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHccCCCHHHHHHH
Q 005014 532 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEI 606 (719)
Q Consensus 532 ~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-~~~la~~~~~~sg~di~~~ 606 (719)
.+.+|..||.++.|.+.+.+ |+. .+.|++...+.....|+....+.++.-+.+ ++.+++.++ .|++..
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~----GdLR~A 227 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISD----GDLRRA 227 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC----CcHHHH
Confidence 57788899999999888888 886 778888888888888888888877763333 445555544 465543
No 157
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=2.2e-12 Score=142.51 Aligned_cols=173 Identities=17% Similarity=0.266 Sum_probs=116.2
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccchhhhccCCch---hhHHHHHHHHHhCCCEEEEEeccchh
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE---ANVREIFDKARQSAPCVLFFDELDSI 498 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~se---~~i~~~f~~a~~~~p~il~iDEid~l 498 (719)
.++++|||++|||||+|++++++++ +..++++++.++...+..... ..+..+.+.. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999864 467889999888766543221 1222222222 24569999999988
Q ss_pred hcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC---CCCcccCCCCCcc--eEEEeCCCCHHHHHHHH
Q 005014 499 ATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEESRLQIF 573 (719)
Q Consensus 499 ~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il 573 (719)
.++ ......|...++.+...++.+|+.+...|+ .+++.+.+ ||. .++.+.+|+.++|.+|+
T Consensus 219 ~~k------------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 219 SYK------------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cCC------------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 532 223445555555554444445554444454 35788887 875 67788999999999999
Q ss_pred HHHhccCCCCCccC---HHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 005014 574 KACLRKSPVSKDVD---LRALAKYTQGFSGADITEICQRACKYAIR 616 (719)
Q Consensus 574 ~~~~~~~~~~~~~d---~~~la~~~~~~sg~di~~~~~~A~~~a~~ 616 (719)
+..++..++...++ ++.|+.... -+.+.+.++|..+...+..
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~-gd~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYS-DDVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccC-CCHHHHHHHHHHHHHHHhc
Confidence 99997755321233 455665555 3778888888887655544
No 158
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4.1e-12 Score=141.78 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=128.5
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 45789999999999988877642 123456899999999999999999997653
Q ss_pred ---------eEEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 454 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 454 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
.++.+++..- . .-..++.+.+.+.. ....|+||||+|.+. ....+.|
T Consensus 80 ~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naL 139 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNAL 139 (546)
T ss_pred HHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHH
Confidence 2333332111 1 12345555554432 345799999999873 3467889
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~s 599 (719)
|..|+.. ...+++|++|+.+..+-+.+++ |+ ..++|.+++.++....++..+++.++.. +..+..+++.+. -+
T Consensus 140 LK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-Gd 213 (546)
T PRK14957 140 LKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GS 213 (546)
T ss_pred HHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 9998864 3456666666778888888877 88 5999999999999988988887765542 223556666664 46
Q ss_pred HHHHHHHHHHHH
Q 005014 600 GADITEICQRAC 611 (719)
Q Consensus 600 g~di~~~~~~A~ 611 (719)
.+++.+++..+.
T Consensus 214 lR~alnlLek~i 225 (546)
T PRK14957 214 LRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 159
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.3e-11 Score=140.47 Aligned_cols=191 Identities=22% Similarity=0.304 Sum_probs=134.6
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEE---ec----
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV---KG---- 460 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v---~~---- 460 (719)
.+.+|+++.|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|..+.+.--.. .|
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 356799999999999999887652 12345689999999999999999998875421000 00
Q ss_pred ------cchhhhccC---CchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC
Q 005014 461 ------PELLTMWFG---ESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 527 (719)
Q Consensus 461 ------~~l~~~~~g---~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~ 527 (719)
.++.. .-+ .+...++.+.+.+... ...|++|||+|.+. ....+.||..|+..
T Consensus 81 ~~~~~~~Dvie-idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtLEEP 145 (725)
T PRK07133 81 ENVNNSLDIIE-MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTLEEP 145 (725)
T ss_pred HhhcCCCcEEE-EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHhhcC
Confidence 01100 001 1234577777766543 45799999999873 23578899998864
Q ss_pred CCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHccCCCHHHHHHH
Q 005014 528 SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEI 606 (719)
Q Consensus 528 ~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-d~~~la~~~~~~sg~di~~~ 606 (719)
...+++|++|+.++.|.+.+++ |+. ++.|.+++.++....++..+.+.++.-+. .+..+|+.+. -+.+++.++
T Consensus 146 --P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~-GslR~Alsl 219 (725)
T PRK07133 146 --PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSS-GSLRDALSI 219 (725)
T ss_pred --CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHH
Confidence 3467778888889999999988 885 89999999999999999888776654322 2566776665 366666666
Q ss_pred HHHHH
Q 005014 607 CQRAC 611 (719)
Q Consensus 607 ~~~A~ 611 (719)
+..+.
T Consensus 220 Lekl~ 224 (725)
T PRK07133 220 AEQVS 224 (725)
T ss_pred HHHHH
Confidence 66554
No 160
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=8.9e-12 Score=139.02 Aligned_cols=186 Identities=22% Similarity=0.284 Sum_probs=132.3
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
+.+|+++.|.+.+++.|...+.. -..+.++||+||+|+|||++|+++|..+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 45789999999999998876532 133467999999999999999999998642
Q ss_pred ---------eEEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 454 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 454 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
.++.++++.. -+-..++.+.+.+... ...|++|||+|.+. ....+.|
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~A~NaL 139 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TSAWNAL 139 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HHHHHHH
Confidence 2233332210 1233467766655443 24699999999873 2246788
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~s 599 (719)
|..|+.. ...+++|++|+.++.|.+++++ |+. +++|++|+.++....++..+.+.+.. .+..+..+++.+.| +
T Consensus 140 LKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 8888864 3457777888889999999988 885 89999999999999999888766543 22335667766654 6
Q ss_pred HHHHHHHHHHHHH
Q 005014 600 GADITEICQRACK 612 (719)
Q Consensus 600 g~di~~~~~~A~~ 612 (719)
.+++.+++..+..
T Consensus 214 lR~AlnlLekL~~ 226 (605)
T PRK05896 214 LRDGLSILDQLST 226 (605)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666443
No 161
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.1e-12 Score=145.23 Aligned_cols=185 Identities=23% Similarity=0.300 Sum_probs=131.6
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
..+|+++.|++.+++.|...+.. -+.+..+||+||||+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 35799999999999998877642 1234568999999999999999999987542
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.++++. ...-..++.+.+.+... ...|+||||+|.+. ....|.|
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naL 139 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAM 139 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHH
Confidence 22222211 11234577777766432 34699999999873 3457889
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~~~~~s 599 (719)
|..|+.. ...+++|++|+.++.+.+.+++ |+ ..++|.+++.++....++..+++.++..+ ..+..+++.+. -+
T Consensus 140 LK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gs 213 (527)
T PRK14969 140 LKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GS 213 (527)
T ss_pred HHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 9999874 3456777777778888888776 87 58999999999999888888876555422 23566666665 46
Q ss_pred HHHHHHHHHHHH
Q 005014 600 GADITEICQRAC 611 (719)
Q Consensus 600 g~di~~~~~~A~ 611 (719)
.+++.+++..|.
T Consensus 214 lr~al~lldqai 225 (527)
T PRK14969 214 MRDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHHH
Confidence 677777776554
No 162
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=8.1e-12 Score=133.67 Aligned_cols=177 Identities=27% Similarity=0.411 Sum_probs=121.9
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCe-----EEEEeccchhhhc---------------cCCch-hhHHHHHHHHHh-
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKGPELLTMW---------------FGESE-ANVREIFDKARQ- 484 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~-----~i~v~~~~l~~~~---------------~g~se-~~i~~~f~~a~~- 484 (719)
|..+++|||||||||.+++.++.++... +++|||..+.+.| .|.+. +....+++....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 3459999999999999999999987433 8999997765432 12222 223334443333
Q ss_pred CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC---CCCCcccCCCCCcc-eEEE
Q 005014 485 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP---DIIDPALLRPGRLD-QLIY 560 (719)
Q Consensus 485 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~---~~ld~allrpgRf~-~~i~ 560 (719)
...-|+++||+|.|..+.+ .++-.|+...+.. ..+|.+|+.+|.. +.+||.+.+ ||. ..|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 4457999999999976421 4666666665544 5678999999986 478898887 553 5689
Q ss_pred eCCCCHHHHHHHHHHHhccCCCC---CccCHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHH
Q 005014 561 IPLPDEESRLQIFKACLRKSPVS---KDVDLRALAKYTQGFSG--ADITEICQRACKYAIREN 618 (719)
Q Consensus 561 ~~~p~~~~r~~Il~~~~~~~~~~---~~~d~~~la~~~~~~sg--~di~~~~~~A~~~a~~~~ 618 (719)
||+++.+|...|++...+..... .+--++.+|..+...+| +---.+|+.|+..|.++.
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999998653222 22235555555443333 333458999999888765
No 163
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=5.6e-12 Score=140.09 Aligned_cols=187 Identities=22% Similarity=0.311 Sum_probs=129.7
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
+.+|+++.|++.+.+.|...+.. ...+..+|||||+|+|||++|+.+|..+++.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 45789999999999999877642 1234558999999999999999999987531
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+. ....+.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naL 139 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNAL 139 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHH
Confidence 12222110 0112345666555543 345799999999873 2346788
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~~~~~s 599 (719)
|..|+... ..+++|.+|+.++.+.+++.+ |+. ++.|++|+.++....++..++..++.-+ ..+..++..+. -+
T Consensus 140 Lk~LEepp--~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~-G~ 213 (486)
T PRK14953 140 LKTLEEPP--PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE-GG 213 (486)
T ss_pred HHHHhcCC--CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 88887643 345566666778888888887 775 7999999999999999999987765432 23556666655 35
Q ss_pred HHHHHHHHHHHHHH
Q 005014 600 GADITEICQRACKY 613 (719)
Q Consensus 600 g~di~~~~~~A~~~ 613 (719)
.+++.+++..+...
T Consensus 214 lr~al~~Ldkl~~~ 227 (486)
T PRK14953 214 MRDAASLLDQASTY 227 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666777666543
No 164
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.38 E-value=4.5e-12 Score=128.22 Aligned_cols=166 Identities=16% Similarity=0.226 Sum_probs=107.7
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccC
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 503 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~ 503 (719)
+.+++|+||+|||||++|++++..+ +.+++.++++++.... ..++..... ..+|+|||++.+....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCCh-
Confidence 4579999999999999999999886 4678888888775432 233333322 3599999999874310
Q ss_pred CCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC---cccCCCCCc--ceEEEeCCCCHHHHHHHHHHHhc
Q 005014 504 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID---PALLRPGRL--DQLIYIPLPDEESRLQIFKACLR 578 (719)
Q Consensus 504 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld---~allrpgRf--~~~i~~~~p~~~~r~~Il~~~~~ 578 (719)
.....+...++........+|+.++..+..++ +.+.+ |+ ...+.+|+|+.+++..+++.++.
T Consensus 107 -----------~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 107 -----------EWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred -----------HHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 01223333333322222344554444454432 66666 66 47899999999999999998876
Q ss_pred cCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 005014 579 KSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIRE 617 (719)
Q Consensus 579 ~~~~~~-~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~ 617 (719)
+.++.- +.-+..|++. -+-+.+++.++++.+...+...
T Consensus 174 ~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~ 212 (226)
T TIGR03420 174 RRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAA 212 (226)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHh
Confidence 655432 2225566664 3457799999988876554443
No 165
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1e-11 Score=135.14 Aligned_cols=176 Identities=20% Similarity=0.233 Sum_probs=120.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|+++.|.+..++.|+..+... ..+..+||+||+||||||+|+.+|+.+++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 456678999999999999888777531 123458999999999999999999998763
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.. ...-..++.+.+.+ ......|+||||+|.+.. ...+.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHH
Confidence 22222210 01122344444333 234556999999998842 234667
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 322 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 322 (719)
+..++. ...++++|.+|+.+..+.+.+++ |+ ..+.+..++..+-.+.++..+....+. ++..+..+++.+.|-
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh
Confidence 777765 33578888888889999999998 76 457888888877777777665443322 334577788887764
No 166
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.38 E-value=5e-11 Score=139.56 Aligned_cols=162 Identities=22% Similarity=0.334 Sum_probs=116.1
Q ss_pred cccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhh---------
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM--------- 191 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~--------- 191 (719)
+..|+++.+++|.+++...... +-..+..++|+||||||||++++.+|+.++.+++.++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 5789999999998877642211 113456799999999999999999999999999887754322
Q ss_pred hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc-----c--------CCCcEE
Q 005014 192 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHVI 258 (719)
Q Consensus 192 ~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~-----~--------~~~~vi 258 (719)
..+.|.....+...+..+....| +++|||+|.+....+.. ....|+..++.- . .-.+++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCceE
Confidence 12444444455555555443444 89999999997654321 124566666531 1 125789
Q ss_pred EEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 259 VIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 259 vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
+|+|+|.. .++++|+. |+ ..|.+..++.++..+|.+.++
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhh
Confidence 99999887 59999997 88 568999999999999988765
No 167
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.4e-11 Score=138.59 Aligned_cols=177 Identities=15% Similarity=0.232 Sum_probs=123.3
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++..-+|++|.|.+..++.|+..+... ..+..+||+||+||||||+++++|+.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 456678999999999999998887531 123458999999999999999999998752
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.++..+ ...-..++.+++.+. .....|+||||+|.|.. ...+.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHH
Confidence 22222211 111234555555443 23456999999998842 234567
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCc
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 323 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 323 (719)
++.|+... .++.+|.+|+.++.|.+.+++ |+ ..+.|..++.++-.+.|+..+....+. ++..+..|++...|-.
T Consensus 140 LKtLEEPP--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 140 LKTLEEPP--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM 214 (830)
T ss_pred HHHHHhcC--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 77776543 367777888889999999987 77 678899999988888887666443332 3344777888888754
No 168
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=8.3e-12 Score=142.09 Aligned_cols=181 Identities=21% Similarity=0.297 Sum_probs=128.7
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
..+|+++.|++.+++.|...+.. -+.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 45799999999999999887642 1345568999999999999999999987531
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.+++.. ...-..++.+.+.+... ...|++|||+|.+. ....|.|
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~naL 139 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNAL 139 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHHH
Confidence 33343322 11234577777665433 24699999999873 2357889
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~s 599 (719)
|..|+.. ...+++|++||.++.|.+.+++ |+. ++.|.+++.++....++..+++.++. .+..+..+++.+.| +
T Consensus 140 Lk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 9999864 3467788888889999999987 875 88999999999988888888776554 22235555555553 4
Q ss_pred HHHHHHHH
Q 005014 600 GADITEIC 607 (719)
Q Consensus 600 g~di~~~~ 607 (719)
-+++.+++
T Consensus 214 lr~al~~L 221 (576)
T PRK14965 214 MRDSLSTL 221 (576)
T ss_pred HHHHHHHH
Confidence 44444443
No 169
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.36 E-value=1.5e-11 Score=124.51 Aligned_cols=158 Identities=14% Similarity=0.164 Sum_probs=102.0
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhccc
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 502 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r 502 (719)
...+++|+||+|||||+||++++++. +..++.+++.++... +.. .....+++|||+|.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~-- 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDD-- 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCc--
Confidence 34579999999999999999999875 557788887665321 111 22346999999998631
Q ss_pred CCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC-CC--CCCcccCCCCCc--ceEEEeCCCCHHHHHHHHHHHh
Q 005014 503 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-PD--IIDPALLRPGRL--DQLIYIPLPDEESRLQIFKACL 577 (719)
Q Consensus 503 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~-~~--~ld~allrpgRf--~~~i~~~~p~~~~r~~Il~~~~ 577 (719)
. ....|+..++........++|.+++. |. .+.+.+.+ || ...+++|+|+.+++..+++...
T Consensus 105 ---------~---~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 105 ---------A---QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred ---------h---HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 1 12334444444333444444445543 31 34566665 76 4799999999999999999887
Q ss_pred ccCCCCCcc-CHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 005014 578 RKSPVSKDV-DLRALAKYTQGFSGADITEICQRACKYA 614 (719)
Q Consensus 578 ~~~~~~~~~-d~~~la~~~~~~sg~di~~~~~~A~~~a 614 (719)
.+.++.-+. -+..|++... -+.+++.++++.-...|
T Consensus 171 ~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYS 207 (227)
T ss_pred HHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 665544222 3555666433 46788888887744433
No 170
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.5e-11 Score=133.76 Aligned_cols=190 Identities=20% Similarity=0.292 Sum_probs=128.5
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEecc-------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------- 461 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~------- 461 (719)
+.+|+++.|.+.+.+.+...+.. + ..+.++|||||||+|||++|+++|+.+........+.
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 46799999999999988877642 1 2346799999999999999999999875421110000
Q ss_pred chhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 462 ELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
++ +.........++.+++.+... .+.|+++||+|.+.. ..++.|+..++.. ....++|+
T Consensus 81 ~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~--~~~~~~Il 143 (367)
T PRK14970 81 EL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEP--PAHAIFIL 143 (367)
T ss_pred Ee-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCC--CCceEEEE
Confidence 00 001112235677777766432 357999999998632 3467788877753 23455666
Q ss_pred ecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 538 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 538 atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
+|+.+..+.+++.+ |+. ++.|++|+.++...++...+.+.++. .+..+..++..+.| +.+.+.+.++...
T Consensus 144 ~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 144 ATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred EeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 67778888899887 774 78999999999999999888776653 23345666666543 5555555555444
No 171
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.3e-11 Score=136.47 Aligned_cols=183 Identities=20% Similarity=0.296 Sum_probs=126.6
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
..+|+++.|.+.+++.|...+.. -..+..+|||||||+|||++|+++|+.+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 46899999999999988877642 123456999999999999999999988643
Q ss_pred ----------eEEEEeccchhhhccCCchhhHHHHHHHH----HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHH
Q 005014 454 ----------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 519 (719)
Q Consensus 454 ----------~~i~v~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ 519 (719)
.++.+++... . +-..++.+-+.. ......|+||||+|.+. ....+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~n~ 140 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAFNS 140 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHHHH
Confidence 2333433211 1 112344333222 22456899999999873 234688
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCC
Q 005014 520 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGF 598 (719)
Q Consensus 520 ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~ 598 (719)
|+..|+... ..+++|++||.++.|.+++.+ |+. .++|++++.++....++..+++.++.- +..+..|+..+.|
T Consensus 141 LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g- 214 (451)
T PRK06305 141 LLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG- 214 (451)
T ss_pred HHHHhhcCC--CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 899988743 366777778888899999987 885 799999999999999988887665432 2335666666653
Q ss_pred CHHHHHHHHHH
Q 005014 599 SGADITEICQR 609 (719)
Q Consensus 599 sg~di~~~~~~ 609 (719)
+.+++.+.+..
T Consensus 215 dlr~a~~~Lek 225 (451)
T PRK06305 215 SLRDAESLYDY 225 (451)
T ss_pred CHHHHHHHHHH
Confidence 44444444443
No 172
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.35 E-value=1.2e-11 Score=125.48 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=99.9
Q ss_pred cceeeecCCCCchhHHHHHHHHHhC---CeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCC
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 504 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~---~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~ 504 (719)
..++||||||||||+|+++++++.. ....+++..+... ....+.+.... ..+++|||++.+.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH--
Confidence 4699999999999999999998754 3344555443221 11222222222 2589999999975321
Q ss_pred CCCCCCCchHHHHHHHHHHhcCCCCCCc-EEEEEecCCCCC---CCcccCCCCCcc--eEEEeCCCCHHHHHHHHHHHhc
Q 005014 505 SVGDAGGAADRVLNQLLTEMDGMSAKKT-VFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLR 578 (719)
Q Consensus 505 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~-v~vi~atn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~ 578 (719)
...+ .|...++.....++ .+++.+++.|.. +.|.|.+ |+. .++.+.+|+.+++.++++....
T Consensus 114 -------~~~~---~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 114 -------LWEM---AIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred -------HHHH---HHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 1122 23333333222333 355555556554 5789988 885 7899999999999999998776
Q ss_pred cCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHH
Q 005014 579 KSPVSK-DVDLRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 579 ~~~~~~-~~d~~~la~~~~~~sg~di~~~~~~A 610 (719)
..++.- +.-++.|++... -+.+.+.+++...
T Consensus 182 ~~~~~l~~~v~~~L~~~~~-~d~r~l~~~l~~l 213 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLD-REMRTLFMTLDQL 213 (235)
T ss_pred HcCCCCCHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence 555442 223566676665 3677777777664
No 173
>PRK04195 replication factor C large subunit; Provisional
Probab=99.35 E-value=1.8e-11 Score=137.51 Aligned_cols=188 Identities=29% Similarity=0.397 Sum_probs=127.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
+..+-+++++.|.++.+++|+.++..... -.++.++||+|||||||||+|+++|++++..++.+++++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~---------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK---------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 44566899999999999999988864221 123678999999999999999999999999999998876432
Q ss_pred hcccchHHHHHHHHHHHHh------cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCC
Q 005014 193 KLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 266 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~------~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~ 266 (719)
...++.+...+.. ..+.+|+|||+|.+..+.+ ......|+..++. ....+|.++|.+
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 1223333332221 2467999999999865321 1223455566652 222344567877
Q ss_pred CCCCH-HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHH
Q 005014 267 NSIDP-ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 333 (719)
Q Consensus 267 ~~ld~-al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 333 (719)
..+.+ .+++ ....+.++.|+..+...+++..+....+. ++..+..++..+.| |+...+..
T Consensus 141 ~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~ 202 (482)
T PRK04195 141 YDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIND 202 (482)
T ss_pred cccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 77776 5654 34679999999999999998776543332 23347777777654 66555443
No 174
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.1e-11 Score=137.81 Aligned_cols=185 Identities=16% Similarity=0.242 Sum_probs=124.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++..-+|++|+|.+..++.|+..+... ..+..+||+||+|+||||+++.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 455678999999999999998887641 123468999999999999999999998762
Q ss_pred ------------------EEEEechhhhhhcccchHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCchHHHHH
Q 005014 182 ------------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERR 239 (719)
Q Consensus 182 ------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~ 239 (719)
++.++... ...-..++.+.+.. ......|+||||+|.|.. .
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------H 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------H
Confidence 12222110 01123455555443 234457999999998842 2
Q ss_pred HHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHH
Q 005014 240 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKD 318 (719)
Q Consensus 240 v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~ 318 (719)
..+.|++.|+.- ..++.+|.+|+.++.+.+.+++ |+ ..+.|..++.++..+.|+..+....+. ++..+..+++.
T Consensus 140 AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345677777653 3466777788889999999998 66 667889999888887777655433332 22336677777
Q ss_pred hCCCccccHHHHHH
Q 005014 319 THGYVGADLAALCT 332 (719)
Q Consensus 319 t~g~~~~dl~~l~~ 332 (719)
+.|-. ++...++.
T Consensus 215 A~Gs~-RdALsLLd 227 (700)
T PRK12323 215 AQGSM-RDALSLTD 227 (700)
T ss_pred cCCCH-HHHHHHHH
Confidence 77643 33334443
No 175
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.35 E-value=2.1e-11 Score=123.79 Aligned_cols=209 Identities=21% Similarity=0.374 Sum_probs=132.0
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCe---EEEEeccchhhhccCCchhhHHHHHHHHHhC-----CCEEEEEeccchhh
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIA 499 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~---~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~-----~p~il~iDEid~l~ 499 (719)
.+++|+||||||||+||+.|+.....+ |+.+++.. ..-+.+|.+|+.++.. ...|||||||+.+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 359999999999999999999987654 77776533 2356789999888652 35799999999873
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEec--CCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHh
Q 005014 500 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 577 (719)
Q Consensus 500 ~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~at--n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 577 (719)
... ...||-. ...+.+++|+|| |.--.|..||++ |+- ++.+.....+....||..-+
T Consensus 236 ksQ--------------QD~fLP~----VE~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 236 KSQ--------------QDTFLPH----VENGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhh--------------hhcccce----eccCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHH
Confidence 211 1223322 235568888887 444578999998 884 66677777888888887644
Q ss_pred c---c--C---CCCC------ccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccc
Q 005014 578 R---K--S---PVSK------DVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDE 643 (719)
Q Consensus 578 ~---~--~---~~~~------~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (719)
. + . ++.. +--++.++..++| |-+..++ |..+++.....+ ..+ ..
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdG----DaR~aLN-~Lems~~m~~tr-------~g~----------~~ 352 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG----DARAALN-ALEMSLSMFCTR-------SGQ----------SS 352 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCc----hHHHHHH-HHHHHHHHHHhh-------cCC----------cc
Confidence 2 1 1 1221 1125556666665 4332222 222221111110 000 12
Q ss_pred cccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccCCCC
Q 005014 644 VAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGS 686 (719)
Q Consensus 644 ~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~~~~~~~ 686 (719)
...++.+|+.++++.-.---...--+.|.-+..-++..|+.+.
T Consensus 353 ~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~ 395 (554)
T KOG2028|consen 353 RVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQ 395 (554)
T ss_pred cceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCcc
Confidence 3478999999998754322234456788888888888888766
No 176
>PRK05642 DNA replication initiation factor; Validated
Probab=99.35 E-value=1.8e-11 Score=124.04 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=109.3
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCC
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 504 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~ 504 (719)
..++|+||+|||||+|+++++++. +...++++..++... ...+.+..+.. .+++|||++.+.++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCCh--
Confidence 568999999999999999999764 567788888777542 12333334333 589999999875321
Q ss_pred CCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC---CCcccCCCCCcc--eEEEeCCCCHHHHHHHHHHHhcc
Q 005014 505 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRK 579 (719)
Q Consensus 505 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~ 579 (719)
.....|+..++.....++.+|++++..|.. +.|.+.+ ||. .++.+.+|+.+++..|++..+..
T Consensus 114 ----------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 114 ----------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred ----------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 223456666666655566777777766643 3688887 884 67778999999999999976655
Q ss_pred CCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHH
Q 005014 580 SPVSK-DVDLRALAKYTQGFSGADITEICQRACK 612 (719)
Q Consensus 580 ~~~~~-~~d~~~la~~~~~~sg~di~~~~~~A~~ 612 (719)
.++.- +.-++.+++... -+.+.+.+++..-..
T Consensus 182 ~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~ 214 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQ 214 (234)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 44432 223555666555 466777777665543
No 177
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.34 E-value=4.4e-11 Score=121.51 Aligned_cols=99 Identities=23% Similarity=0.186 Sum_probs=73.9
Q ss_pred EEEEEecCC------------CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 005014 533 VFIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 599 (719)
Q Consensus 533 v~vi~atn~------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~s 599 (719)
-+||+|||+ |+-|+..|+. |+ .+|...|++.++.+.|++...+...+.. +.-++.|+.....-|
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etS 397 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETS 397 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhh
Confidence 378889997 5666667776 66 4777889999999999999998766553 334777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhc
Q 005014 600 GADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 659 (719)
Q Consensus 600 g~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~ 659 (719)
-+.--+++.-|...|.+++ ...|..+|++.|..-.
T Consensus 398 LRYa~qLL~pa~iiA~~rg-------------------------~~~V~~~dVe~a~~lF 432 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRG-------------------------SKRVEVEDVERAKELF 432 (450)
T ss_pred HHHHHHhccHHHHHHHHhC-------------------------CCeeehhHHHHHHHHH
Confidence 6777778888888887764 2368888999887653
No 178
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.2e-11 Score=139.64 Aligned_cols=183 Identities=21% Similarity=0.289 Sum_probs=127.9
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
+.+|+++.|++.+++.|...+.. -..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 45799999999999999887642 1234569999999999999999999987532
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+. ....+.|
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naL 139 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNAL 139 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHH
Confidence 22222211 011234555554332 3445799999999873 3457888
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~s 599 (719)
|..|+.. ...+++|++|+.++.|.+++.+ |+. .+.|.+++.++....++..+++.++.- +..+..|++.+.| +
T Consensus 140 LK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIEEP--PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhccC--CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9888853 3467777787888889899887 886 789999999999999998887665442 2335556666554 5
Q ss_pred HHHHHHHHHH
Q 005014 600 GADITEICQR 609 (719)
Q Consensus 600 g~di~~~~~~ 609 (719)
.+++.+++..
T Consensus 214 lR~alslLdk 223 (563)
T PRK06647 214 VRDAYTLFDQ 223 (563)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 179
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=3e-11 Score=136.95 Aligned_cols=193 Identities=20% Similarity=0.197 Sum_probs=134.3
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEe-c-------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK-G------- 460 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~-~------- 460 (719)
..+|+++.|++.+++.|...+.. -+.+.++||+||+|+|||++|+++|+.+.+.....+ +
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 45799999999999999887642 134567999999999999999999998764321111 0
Q ss_pred -------------cchhhhc--cCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHH
Q 005014 461 -------------PELLTMW--FGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 521 (719)
Q Consensus 461 -------------~~l~~~~--~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 521 (719)
++++... -.-.-..||.+.+.++.. ...|+||||+|.+. ....+.||
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~naLL 153 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNALL 153 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHHHH
Confidence 1111000 001134577777766543 35799999999873 23578889
Q ss_pred HHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCCH
Q 005014 522 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 600 (719)
Q Consensus 522 ~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~~~~~sg 600 (719)
..|+... ..+++|++|+.++.+-+.+++ |+ .++.|..++.++....++..+++.++.-+ ..+..|++.+. .+.
T Consensus 154 KtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~-Gdl 227 (598)
T PRK09111 154 KTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE-GSV 227 (598)
T ss_pred HHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Confidence 8888653 346666677777778788877 88 48999999999999999999887665433 33556676665 477
Q ss_pred HHHHHHHHHHHHH
Q 005014 601 ADITEICQRACKY 613 (719)
Q Consensus 601 ~di~~~~~~A~~~ 613 (719)
+++.+.+..+...
T Consensus 228 r~al~~Ldkli~~ 240 (598)
T PRK09111 228 RDGLSLLDQAIAH 240 (598)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777665433
No 180
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=3.1e-11 Score=133.53 Aligned_cols=174 Identities=18% Similarity=0.276 Sum_probs=118.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC------------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 180 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~------------ 180 (719)
++.+-+|+++.|.+..++.|+..+... ..+..+||+|||||||||+|+++|+.+++
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 456678999999999888887766531 23446999999999999999999999865
Q ss_pred ------------eEEEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 181 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 181 ------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
.++.+++.. ...-..++.+.+.+.. ....++||||+|.+.. .....|
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~L 137 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNAL 137 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHH
Confidence 233333321 0112344555544332 3346999999998842 123456
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC--CCCCCcccHHHHHHHhCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHG 321 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~--~~l~~~~~l~~la~~t~g 321 (719)
+..++... ..+++|++|+.+..+++++++ |+ ..+.+.+++.++...+++..+.. ..+. +..+..++..+.|
T Consensus 138 Lk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~-~eal~~Ia~~s~G 210 (472)
T PRK14962 138 LKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEID-REALSFIAKRASG 210 (472)
T ss_pred HHHHHhCC--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCC
Confidence 66666432 356666677777889999987 76 57899999999988888876543 3333 3346777777654
No 181
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.33 E-value=1.9e-11 Score=130.13 Aligned_cols=176 Identities=20% Similarity=0.332 Sum_probs=129.5
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhc
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 500 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~ 500 (719)
..+.++||||.|+|||+|++|++++. +..++++...++...++-....+-..-|++-+ .-.+++||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34569999999999999999999886 34688888888877666544444445666666 446999999999975
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC---CcccCCCCCcc--eEEEeCCCCHHHHHHHHHH
Q 005014 501 QRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEESRLQIFKA 575 (719)
Q Consensus 501 ~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~ 575 (719)
+ .+...+|...++.+...++.+|+.+...|..+ +|.|.+ ||. .++.+.+||.+.|..|++.
T Consensus 190 k------------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 190 K------------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred C------------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHH
Confidence 4 23456777777777777777777777777654 578887 886 5668889999999999999
Q ss_pred HhccCCCCCccC-HHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q 005014 576 CLRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIREN 618 (719)
Q Consensus 576 ~~~~~~~~~~~d-~~~la~~~~~~sg~di~~~~~~A~~~a~~~~ 618 (719)
.....++.-+-+ +..+|+... -+.+++..++......|....
T Consensus 256 ka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~ 298 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK 298 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC
Confidence 887766553333 455665554 477888888877777665544
No 182
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=2.2e-11 Score=135.17 Aligned_cols=188 Identities=23% Similarity=0.308 Sum_probs=133.9
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
+.+|+++.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|+.+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 45799999999999999877642 1 34456899999999999999999988632
Q ss_pred ---------eEEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 454 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 454 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
.++.++++.- ..-..++.+.+.... ....|++|||+|.+. ....+.|
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NAL 137 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNAL 137 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 1233322110 012456666554332 224699999998873 3467889
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~s 599 (719)
|..|+... ..+.+|.+|+.+..|.+++++ |+ .+++|.+++.++....++..+++.++.- +..+..+++.+.| +
T Consensus 138 LK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 99998753 345666667778999999988 86 4899999999999999988887765542 3346667776664 7
Q ss_pred HHHHHHHHHHHHHHH
Q 005014 600 GADITEICQRACKYA 614 (719)
Q Consensus 600 g~di~~~~~~A~~~a 614 (719)
.+++.+++..|...+
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 788888887776654
No 183
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=3.2e-11 Score=130.41 Aligned_cols=184 Identities=21% Similarity=0.307 Sum_probs=123.0
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---------------
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------------- 182 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~--------------- 182 (719)
.|++|+|.+..++.|+..+..+..++ ..++...+..+||+||+|+|||++|+++|..+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 47899999999999999998654332 223334567899999999999999999999875431
Q ss_pred --------EEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 005014 183 --------FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 250 (719)
Q Consensus 183 --------i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~ 250 (719)
..+... +. ...-..++.+++.+.. ....|+||||+|.+... ..+.|+..++.
T Consensus 80 ~~~~hpD~~~i~~~---~~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPE---GL--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhc
Confidence 111110 00 1123456777766543 33469999999988432 23567777775
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHH
Q 005014 251 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAA 329 (719)
Q Consensus 251 ~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~ 329 (719)
... ..++|++ |+.++.+.|.+++ |+ ..+.|++|+.++..+.|.... .+. ......++..++|..+..+..
T Consensus 144 p~~-~~~fIL~-a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPP-RTVWLLC-APSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCC-CCeEEEE-ECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 432 3444444 4448899999998 76 689999999998877775322 222 234567788888877655433
No 184
>PRK08727 hypothetical protein; Validated
Probab=99.32 E-value=3.2e-11 Score=122.21 Aligned_cols=158 Identities=21% Similarity=0.259 Sum_probs=97.8
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCC
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 504 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~ 504 (719)
..++|+||+|||||+|+++++.++ +...++++..++. ..+...++.... ..+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~~--~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALEG--RSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHhc--CCEEEEeCcccccCChH-
Confidence 449999999999999999998775 4455566554432 223345554443 35999999998754321
Q ss_pred CCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC---CcccCCCCCc--ceEEEeCCCCHHHHHHHHHHHhcc
Q 005014 505 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRL--DQLIYIPLPDEESRLQIFKACLRK 579 (719)
Q Consensus 505 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l---d~allrpgRf--~~~i~~~~p~~~~r~~Il~~~~~~ 579 (719)
. ...++..++.....+.-+|+.+.+.|..+ +|++.+ || ..++.+++|+.+++..|++..+..
T Consensus 111 --------~---~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 111 --------D---EVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred --------H---HHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 1 12233333333222323444444556644 789988 87 567899999999999999987765
Q ss_pred CCCC-CccCHHHHHHHccCCCHHHHHHHHHHH
Q 005014 580 SPVS-KDVDLRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 580 ~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A 610 (719)
.++. ++..+..|++.+.| +.+.+.++++..
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l 208 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRL 208 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4443 22235566666542 333333445443
No 185
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=1.4e-10 Score=126.29 Aligned_cols=164 Identities=23% Similarity=0.354 Sum_probs=109.2
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC---------CeEEEEechhh
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEI 190 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~---------~~~i~v~~~~l 190 (719)
+++.|.++++++|...+.-.+.. ..+.+++|+||||||||+++++++..+. ..+++++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 46899999999998887542211 2345799999999999999999988653 46788887543
Q ss_pred hh----------hcc--c--------chHHHHHHHHHHHH-hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhh
Q 005014 191 MS----------KLA--G--------ESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 249 (719)
Q Consensus 191 ~~----------~~~--g--------~~~~~l~~vf~~a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~ 249 (719)
.+ ... + ...+.+..+++... ...+.+|+|||+|.+.... ..++.+|..+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 21 110 1 11223344444433 2456789999999997321 113344444421
Q ss_pred cc-cCCCcEEEEEecCCCC---CCCHHhhccCCCc-eEEEeCCCChHHHHHHHHHHhc
Q 005014 250 GL-KSRAHVIVIGATNRPN---SIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTK 302 (719)
Q Consensus 250 ~~-~~~~~vivI~atn~~~---~ld~al~r~~Rf~-~~i~i~~P~~~~R~~il~~~~~ 302 (719)
.. ....++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++....
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 11 1235788888888775 56777766 564 6789999999999999987764
No 186
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.32 E-value=7.9e-12 Score=125.13 Aligned_cols=170 Identities=22% Similarity=0.383 Sum_probs=111.9
Q ss_pred cceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccchhhhccCCch-hhHHHHHHHHHhCCCEEEEEeccchhhcc
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQ 501 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~se-~~i~~~f~~a~~~~p~il~iDEid~l~~~ 501 (719)
..++||||+|+|||+|.++++++. +...+++++.++...+..... ..+..+.+..+ ...+++||+++.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 458999999999999999999874 567889998888766543221 22333333333 3369999999998542
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC---CcccCCCCCcc--eEEEeCCCCHHHHHHHHHHH
Q 005014 502 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEESRLQIFKAC 576 (719)
Q Consensus 502 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 576 (719)
.+....|...++.+...++.+|+++...|..+ ++.|.+ ||. .++.+.+|+.+.|..|++.+
T Consensus 113 ------------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 113 ------------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHH
Confidence 33456666666666556667777777777654 566766 776 57889999999999999999
Q ss_pred hccCCCCCccC-HHHHHHHccCCCHHHHHHHHHHHHHHH
Q 005014 577 LRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYA 614 (719)
Q Consensus 577 ~~~~~~~~~~d-~~~la~~~~~~sg~di~~~~~~A~~~a 614 (719)
+...++.-+.+ ++.|++... -+.++|..++..-...+
T Consensus 179 a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 179 AKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 98877663333 445555544 47788888777665443
No 187
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.31 E-value=4.2e-11 Score=135.22 Aligned_cols=216 Identities=24% Similarity=0.359 Sum_probs=133.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeE
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFF 182 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~ 182 (719)
+..+.+|+++.|.+..++.++..+.. ..+.++||+||||||||++|+++...+ +.+|
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 34566899999999999888765422 234689999999999999999997642 3578
Q ss_pred EEEechhhh-------hhcccchHHHH---HHHHH----------HHHhcCCcEEEEccccccCCCCCCCchHHHHHHHH
Q 005014 183 FCINGPEIM-------SKLAGESESNL---RKAFE----------EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 242 (719)
Q Consensus 183 i~v~~~~l~-------~~~~g~~~~~l---~~vf~----------~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~ 242 (719)
+.++|.... ....+.....+ ...|. ........+|||||++.+.+. ..+
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q~ 193 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QMN 193 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HHH
Confidence 888875321 11111000000 00000 011223469999999988533 223
Q ss_pred HHHHHhhccc--------------------------CCCc-EEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHH
Q 005014 243 QLLTLMDGLK--------------------------SRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 295 (719)
Q Consensus 243 ~L~~~l~~~~--------------------------~~~~-vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 295 (719)
.|+..++... .... .++.+||+.|+.+++++++ |+ .++.+++++.++..+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHH
Confidence 3444432210 0112 3445667789999999998 76 578899999999999
Q ss_pred HHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhcc
Q 005014 296 VLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGT 374 (719)
Q Consensus 296 il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~ 374 (719)
|++..+++..+. .+..+..++..+. .++++..+++.|+..+..+. ...++.+|+..++..
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~-----------------~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG-----------------RKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC-----------------CcEEcHHHHHHHhCC
Confidence 999887655432 2223455554433 56788888887765443221 134677777777654
No 188
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.30 E-value=5.7e-11 Score=130.82 Aligned_cols=170 Identities=29% Similarity=0.468 Sum_probs=115.7
Q ss_pred cCCCCccccccchHHHHHH---HHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechh
Q 005014 113 RLDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 189 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~---l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~ 189 (719)
++.+-+++++.|.+..+.. |++++.. ....+++|+|||||||||+|+++++.++..++.+++..
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 3455678899999988666 6666643 12347999999999999999999999999999888753
Q ss_pred hhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecC-
Q 005014 190 IMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN- 264 (719)
Q Consensus 190 l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn- 264 (719)
. ....++.+++.+. .....+|||||+|.+... ....|+..++. ..+++|++|+
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc----CcEEEEEeCCC
Confidence 2 1234455555443 235679999999987421 12345555542 4566666543
Q ss_pred -CCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCC-----CCCCcccHHHHHHHhCC
Q 005014 265 -RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM-----KLSDDVDLERIAKDTHG 321 (719)
Q Consensus 265 -~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~-----~l~~~~~l~~la~~t~g 321 (719)
....+++++++ |+ ..+.+++++.++...+++..+... .+ .+..+..+++.+.|
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~G 188 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANG 188 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCC
Confidence 33478899987 77 678999999999988888665431 22 22235566666644
No 189
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=5.9e-11 Score=135.48 Aligned_cols=182 Identities=21% Similarity=0.285 Sum_probs=127.3
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
...|+++.|.+.+++.|...+... +...++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 467999999999999998876531 233569999999999999999999997542
Q ss_pred ------------EEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHH
Q 005014 455 ------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLN 518 (719)
Q Consensus 455 ------------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~ 518 (719)
++.++. ..+..-..++.+...+... ...|+||||+|.+- ....+
T Consensus 80 ~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~n 139 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFN 139 (620)
T ss_pred HHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHH
Confidence 222221 1123345778888776532 34699999999873 34578
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccC
Q 005014 519 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQG 597 (719)
Q Consensus 519 ~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~ 597 (719)
.||..|+.- ...+++|++|+.++.+-+.+++ |+. .++|+.++.++....++..+++.++.- ...+..+++.+.|
T Consensus 140 aLLK~LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 140 ALLKTLEEP--PPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHhcC--CcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 899999853 3456777777888888888887 884 789999998888887777776654331 2235566666654
Q ss_pred CCHHHHHHHHH
Q 005014 598 FSGADITEICQ 608 (719)
Q Consensus 598 ~sg~di~~~~~ 608 (719)
+.+++.++++
T Consensus 215 -~lr~A~~lLe 224 (620)
T PRK14948 215 -GLRDAESLLD 224 (620)
T ss_pred -CHHHHHHHHH
Confidence 3344444443
No 190
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=5e-11 Score=135.29 Aligned_cols=188 Identities=19% Similarity=0.271 Sum_probs=128.4
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
..+|+++.|++.+++.|+..+.. -+.+.++||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 45799999999999998876542 2345669999999999999999999988652
Q ss_pred ------------------EEEEeccchhhhccCCchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCc
Q 005014 455 ------------------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGA 512 (719)
Q Consensus 455 ------------------~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~ 512 (719)
++.+++... .+-..|+.+.+.+. .....|++|||+|.+.
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------- 140 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------- 140 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-------------
Confidence 111111100 11345565554442 2345699999999873
Q ss_pred hHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHH
Q 005014 513 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRAL 591 (719)
Q Consensus 513 ~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~l 591 (719)
....+.||..|+...+ ..++|++|+.++.|-+.+.+ |. .++.|.+++.++....++..+++.++. .+..++.+
T Consensus 141 -~~a~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~L 214 (620)
T PRK14954 141 -TAAFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLI 214 (620)
T ss_pred -HHHHHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 2346788888886543 35555566667888888887 77 499999999999888888888765543 33346677
Q ss_pred HHHccCCCHHHHHHHHHHHHHHH
Q 005014 592 AKYTQGFSGADITEICQRACKYA 614 (719)
Q Consensus 592 a~~~~~~sg~di~~~~~~A~~~a 614 (719)
+..+.| +.+++.+.+......+
T Consensus 215 a~~s~G-dlr~al~eLeKL~~y~ 236 (620)
T PRK14954 215 ARKAQG-SMRDAQSILDQVIAFS 236 (620)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhc
Confidence 777653 5566556555544443
No 191
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.30 E-value=1.7e-11 Score=126.50 Aligned_cols=132 Identities=25% Similarity=0.350 Sum_probs=93.7
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCeEEEEecc------chhhhccCCchhhHH---------------------HHH
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLTMWFGESEANVR---------------------EIF 479 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~------~l~~~~~g~se~~i~---------------------~~f 479 (719)
...++|+||||||||++|+++|...+.+++.+++. ++++.|.|.....+. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 35699999999999999999999999999998764 444444432222111 122
Q ss_pred HHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC--------------CCCcEEEEEecCCCC--
Q 005014 480 DKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------------AKKTVFIIGATNRPD-- 543 (719)
Q Consensus 480 ~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------------~~~~v~vi~atn~~~-- 543 (719)
..++. ..++++|||+.+- ..+.+.|+..|+.-. ...++.||+|+|...
T Consensus 101 ~A~~~--g~~lllDEi~r~~--------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 101 LAVRE--GFTLVYDEFTRSK--------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHc--CCEEEEcchhhCC--------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 22222 3599999999852 345666666665421 112567999999763
Q ss_pred ---CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHh
Q 005014 544 ---IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 577 (719)
Q Consensus 544 ---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 577 (719)
.+++++++ || ..++++.|+.++-.+|++...
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56889998 99 589999999999999998765
No 192
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=1.7e-10 Score=126.99 Aligned_cols=220 Identities=25% Similarity=0.314 Sum_probs=133.5
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEechhhh--
Q 005014 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIM-- 191 (719)
Q Consensus 119 ~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~~l~-- 191 (719)
.+.+.|-++++++|...+.-.+.. ..+.+++|+||||||||++++.+++.+ +..+++++|....
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 356888999999988877532221 234579999999999999999999876 4678888885331
Q ss_pred --------hhccc--------chHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCC
Q 005014 192 --------SKLAG--------ESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR 254 (719)
Q Consensus 192 --------~~~~g--------~~~~~l~~vf~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~ 254 (719)
....+ .....+..+.+.... ..+.+|+|||+|.+....+ ...+..|+.+++... .
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~-~ 171 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYP-G 171 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccC-C
Confidence 11111 112233333333332 3567999999999872211 123445555554433 2
Q ss_pred CcEEEEEecCCCC---CCCHHhhccCCC-ceEEEeCCCChHHHHHHHHHHhcCC---CCCCcccHHHHHHHhCCCccccH
Q 005014 255 AHVIVIGATNRPN---SIDPALRRFGRF-DREIDIGVPDEVGRLEVLRIHTKNM---KLSDDVDLERIAKDTHGYVGADL 327 (719)
Q Consensus 255 ~~vivI~atn~~~---~ld~al~r~~Rf-~~~i~i~~P~~~~R~~il~~~~~~~---~l~~~~~l~~la~~t~g~~~~dl 327 (719)
.++.+|+++|..+ .+++.+++ || ...+.+++++.++..+|++..+... ....+..+..+++.+.+.. +|+
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~-Gd~ 248 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH-GDA 248 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc-CcH
Confidence 3677788877653 46777765 44 3578999999999999998776421 1123333566666664322 233
Q ss_pred ---HHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccC
Q 005014 328 ---AALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 328 ---~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
..++..|...+..+. ...++.+++..|+...
T Consensus 249 r~a~~ll~~a~~~a~~~~-----------------~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREG-----------------SRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHH
Confidence 344554443332221 2346777777776544
No 193
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.3e-11 Score=119.21 Aligned_cols=131 Identities=24% Similarity=0.398 Sum_probs=91.8
Q ss_pred cccccHHHHHHhhhccccCCCChhhhhhh----cCCC-CcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh-hhc
Q 005014 394 DIGGLENVKRELQETVQYPVEHPEKFEKF----GMSP-SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMW 467 (719)
Q Consensus 394 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~----~~~~-~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-~~~ 467 (719)
-++|++..|+.|.-.+.. |-..+... .+.. .+.+||.||+|||||.||+.+|+.++.||-.-++..|. ..|
T Consensus 62 YVIGQe~AKKvLsVAVYN---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGY 138 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYN---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGY 138 (408)
T ss_pred heecchhhhceeeeeehh---HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccc
Confidence 467888888887655421 22222111 1122 24599999999999999999999999999888887775 479
Q ss_pred cCCchhhH-HHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC
Q 005014 468 FGESEANV-REIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 527 (719)
Q Consensus 468 ~g~se~~i-~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~ 527 (719)
+|+.-.++ -.+.+.|. .....|++|||||.++.+....+-..+-.+.-+...||..++|-
T Consensus 139 VGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 139 VGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 99886654 45555432 22346999999999987654433333444567889999999984
No 194
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.29 E-value=2.2e-11 Score=129.29 Aligned_cols=175 Identities=29% Similarity=0.456 Sum_probs=121.5
Q ss_pred ccchHHHHHHHHHHHHcccCChhhHhhhC-CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh-hccc-ch
Q 005014 122 VGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-ES 198 (719)
Q Consensus 122 i~G~~~~~~~l~~~~~~~l~~~~~~~~l~-~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~-~~~g-~~ 198 (719)
|.|.+++++.+...+...++...+...+. -.++++|||+||||||||++++++|..++.+|+.+++..+.. .|.| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 89999999998777665433332211111 224589999999999999999999999999999999876653 4555 34
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 005014 199 ESNLRKAFEEA--------------------------------------------------------------------- 209 (719)
Q Consensus 199 ~~~l~~vf~~a--------------------------------------------------------------------- 209 (719)
+..++.+|+.+
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 44444444443
Q ss_pred ----------------------------------------------------------------------HhcCCcEEEE
Q 005014 210 ----------------------------------------------------------------------EKNAPSIIFI 219 (719)
Q Consensus 210 ----------------------------------------------------------------------~~~~p~iL~i 219 (719)
......|+||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0123469999
Q ss_pred ccccccCCCCCCCchHH-HHHHHHHHHHHhhccc--------CCCcEEEEEec----CCCCCCCHHhhccCCCceEEEeC
Q 005014 220 DEIDSIAPKREKTHGEV-ERRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDIG 286 (719)
Q Consensus 220 DEid~l~~~~~~~~~~~-~~~v~~~L~~~l~~~~--------~~~~vivI~at----n~~~~ld~al~r~~Rf~~~i~i~ 286 (719)
||||.++........++ ..-+.+.|+.++++-. ...++++|++- ..|+++=|.|. |||...+.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 99999997653222222 2235566888877622 23578888643 24666777776 5999999999
Q ss_pred CCChHHHHHHHH
Q 005014 287 VPDEVGRLEVLR 298 (719)
Q Consensus 287 ~P~~~~R~~il~ 298 (719)
.++.++..+||.
T Consensus 332 ~L~~edL~rILt 343 (441)
T TIGR00390 332 ALTTDDFERILT 343 (441)
T ss_pred CCCHHHHHHHhc
Confidence 999999999884
No 195
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.28 E-value=2.6e-11 Score=125.91 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=98.6
Q ss_pred CCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhh--ccCCchhh----------HHHHHHHHHhCCCEEEE
Q 005014 424 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEAN----------VREIFDKARQSAPCVLF 491 (719)
Q Consensus 424 ~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~--~~g~se~~----------i~~~f~~a~~~~p~il~ 491 (719)
+...++++|.||||||||++++.+|..++.+++.|++...++. ++|...-. ....+-.|.. .+++++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~ill 139 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALC 139 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEE
Confidence 3345679999999999999999999999999999988766544 45542211 1112333433 357899
Q ss_pred EeccchhhcccCCCCCCCCCchHHHHHHHHHH-----hcC----CCCCCcEEEEEecCCCC------------CCCcccC
Q 005014 492 FDELDSIATQRGSSVGDAGGAADRVLNQLLTE-----MDG----MSAKKTVFIIGATNRPD------------IIDPALL 550 (719)
Q Consensus 492 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~-----ld~----~~~~~~v~vi~atn~~~------------~ld~all 550 (719)
+||+|..-+ .....++.+|.. +.+ +.....+.||+|+|..+ .+++|++
T Consensus 140 lDEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 140 FDEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred echhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 999998522 122333444431 111 11234688999999864 4678999
Q ss_pred CCCCcceEEEeCCCCHHHHHHHHHHHhcc
Q 005014 551 RPGRLDQLIYIPLPDEESRLQIFKACLRK 579 (719)
Q Consensus 551 rpgRf~~~i~~~~p~~~~r~~Il~~~~~~ 579 (719)
. ||-.++.+++|+.++-.+|+......
T Consensus 209 D--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 209 D--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred h--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 8 99988999999999999999876543
No 196
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.3e-11 Score=133.12 Aligned_cols=186 Identities=20% Similarity=0.267 Sum_probs=124.6
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
+.+|+++.|++.+++.|...+.. + +.+..+||+||||||||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 45799999999999998876642 1 345569999999999999999999987542
Q ss_pred ------------------EEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCc
Q 005014 455 ------------------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGA 512 (719)
Q Consensus 455 ------------------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~ 512 (719)
++.+++.+. ..-..++.+.+.+.. ....|+||||+|.+..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------ 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------
Confidence 222222110 112455655554422 2346999999998732
Q ss_pred hHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHH
Q 005014 513 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRAL 591 (719)
Q Consensus 513 ~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~l 591 (719)
...+.|+..++... ...++|++|+.+..+-+++.+ |+. ++.|++++.++....++..+++.++. .+..++.+
T Consensus 142 --~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 142 --AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred --HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 24567888887543 344555566667777788877 775 89999999999988888888765543 23335566
Q ss_pred HHHccCCCHHHHHHHHHHHHH
Q 005014 592 AKYTQGFSGADITEICQRACK 612 (719)
Q Consensus 592 a~~~~~~sg~di~~~~~~A~~ 612 (719)
+..+.| +.+.+.+.+..+..
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~ 234 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIA 234 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 666653 55555555555433
No 197
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.28 E-value=5.8e-11 Score=126.73 Aligned_cols=184 Identities=22% Similarity=0.272 Sum_probs=120.0
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC-----CeEEEEeccch
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 463 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~-----~~~i~v~~~~l 463 (719)
+.+|+++.|.+.+++.|...+.. + ...+++|+||||||||++++++++++. .+++.++.++-
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~-----------~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE-----------K--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 35789999999999988876542 1 112489999999999999999999863 34555554432
Q ss_pred hhhccCCchhhHHHHH-HHHHh-----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 464 LTMWFGESEANVREIF-DKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f-~~a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
.. ...++..+ +.++. ..+.++++||+|.+.. ...+.|+..++.... +..+|.
T Consensus 80 ~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~~--~~~lIl 137 (319)
T PRK00440 80 RG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQ--NTRFIL 137 (319)
T ss_pred cc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCCC--CCeEEE
Confidence 11 11122222 22221 2346999999998732 224566666665443 245556
Q ss_pred ecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 538 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 538 atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
++|.+..+.+++.+ |+. +++|++++.++...+++.++++.++. .+..+..+++.+.| +.+.+.+.++.++
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 67777777777777 776 68999999999999999999876653 23346666666543 4444444554443
No 198
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.28 E-value=4.6e-11 Score=133.18 Aligned_cols=154 Identities=25% Similarity=0.442 Sum_probs=104.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 229 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~ 229 (719)
.+++||||+|||||+|+++++.++ +..++++++.++...+..........-|.... ..+.+|+|||++.+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 55688899887765543322211112232222 246799999999986432
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCC---CCHHhhccCCCc--eEEEeCCCChHHHHHHHHHHhcC-
Q 005014 230 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN- 303 (719)
Q Consensus 230 ~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~---ld~al~r~~Rf~--~~i~i~~P~~~~R~~il~~~~~~- 303 (719)
. ....++..++.+......++++++..|.. +++.+++ ||. ..+.+..|+.+.|..|++..+..
T Consensus 228 ~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 228 R---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred H---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 1 12344555555444445566766666655 5678887 774 57899999999999999987754
Q ss_pred -CCCCCcccHHHHHHHhCC
Q 005014 304 -MKLSDDVDLERIAKDTHG 321 (719)
Q Consensus 304 -~~l~~~~~l~~la~~t~g 321 (719)
+.+.++ .+..++....|
T Consensus 297 ~~~l~~e-~l~~ia~~~~~ 314 (450)
T PRK00149 297 GIDLPDE-VLEFIAKNITS 314 (450)
T ss_pred CCCCCHH-HHHHHHcCcCC
Confidence 333333 47777777665
No 199
>PRK06620 hypothetical protein; Validated
Probab=99.28 E-value=3.3e-11 Score=120.01 Aligned_cols=144 Identities=20% Similarity=0.255 Sum_probs=95.7
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCC
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG 507 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~ 507 (719)
+.++||||||||||+|++++++..+..++. .... ....+ + ...++++|||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~---~--~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL---E--KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH---h--cCCEEEEeccccch--------
Confidence 569999999999999999999887653322 1100 01111 1 23689999999531
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC--CCcccCCCCCcc--eEEEeCCCCHHHHHHHHHHHhccCCCC
Q 005014 508 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI--IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPVS 583 (719)
Q Consensus 508 ~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~--ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~ 583 (719)
. ..|...++.+...++.++|+++..|.. + |+|++ |+. .++.+.+|+.+.+..+++..+...++.
T Consensus 99 ------~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 99 ------E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred ------H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 134444444445566788888877654 5 77776 876 468999999999999999888765543
Q ss_pred C-ccCHHHHHHHccCCCHHHHHHHHHHH
Q 005014 584 K-DVDLRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 584 ~-~~d~~~la~~~~~~sg~di~~~~~~A 610 (719)
- +.-++.|++... -+.+.+.+++...
T Consensus 167 l~~ev~~~L~~~~~-~d~r~l~~~l~~l 193 (214)
T PRK06620 167 ISRQIIDFLLVNLP-REYSKIIEILENI 193 (214)
T ss_pred CCHHHHHHHHHHcc-CCHHHHHHHHHHH
Confidence 2 233556666665 3666766666653
No 200
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.28 E-value=1.7e-10 Score=116.67 Aligned_cols=186 Identities=18% Similarity=0.286 Sum_probs=112.0
Q ss_pred Cccccc--cchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhh
Q 005014 117 VGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM 191 (719)
Q Consensus 117 ~~~~~i--~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~ 191 (719)
.+|++. ++.+..++.+++++.. ..+.+++|+||+|||||+++++++..+ +..++++++..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 345544 4556677777766431 335689999999999999999999876 4678889888775
Q ss_pred hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCC-
Q 005014 192 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID- 270 (719)
Q Consensus 192 ~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld- 270 (719)
... ..+++.. ....+|+|||++.+..... ....|..+++........++++++..+..++
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~ 139 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQLPL 139 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHCCc
Confidence 432 2222222 2345999999998753310 1233444444433333345554444444432
Q ss_pred --HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHH
Q 005014 271 --PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 335 (719)
Q Consensus 271 --~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 335 (719)
+.+.+...+...+.+++|+.+++..+++.......+. ....+..++....| ..+.+..++.++.
T Consensus 140 ~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~ 206 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALD 206 (226)
T ss_pred ccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 6666522335789999999999999998765432222 22235666664333 3445555555543
No 201
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.2e-10 Score=129.97 Aligned_cols=185 Identities=17% Similarity=0.224 Sum_probs=123.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|+++.|.+..++.|...+... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 355678999999999999988887531 224578999999999999999999998752
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.+- ..-..++.+...+. .....|+||||+|.|.. ...+.|
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NAL 138 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNAL 138 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence 233332210 11234555555432 23457999999998842 134567
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCc
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 323 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 323 (719)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+-...++..+....+. .+..+..+++.+.|-
T Consensus 139 LKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~Gd- 212 (702)
T PRK14960 139 LKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGS- 212 (702)
T ss_pred HHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77777533 355666677778888888775 66 668899999988888877665543332 333477778777653
Q ss_pred cccHHHHHH
Q 005014 324 GADLAALCT 332 (719)
Q Consensus 324 ~~dl~~l~~ 332 (719)
.+++..++.
T Consensus 213 LRdALnLLD 221 (702)
T PRK14960 213 LRDALSLTD 221 (702)
T ss_pred HHHHHHHHH
Confidence 333434433
No 202
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.5e-10 Score=132.91 Aligned_cols=191 Identities=17% Similarity=0.223 Sum_probs=122.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEE-E----E--
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF-C----I-- 185 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i-~----v-- 185 (719)
++.+.+|++|.|.+..++.|+.++... ..+..+||+||+||||||+|+++|+.+++... . .
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 456678999999999999988877531 12345799999999999999999999876410 0 0
Q ss_pred -echhhhhh-------ccc---chHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 005014 186 -NGPEIMSK-------LAG---ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 250 (719)
Q Consensus 186 -~~~~l~~~-------~~g---~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~ 250 (719)
.|..+... +.+ ..-..++.+.+... .....|+||||+|.|. ....+.|+..|+.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLEE 145 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLEE 145 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHhc
Confidence 01111100 000 11233455544332 2345699999999884 2244667777776
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHH
Q 005014 251 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAA 329 (719)
Q Consensus 251 ~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~ 329 (719)
.. ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++-...|+..+....+. .+..+..++..+.|-. +++..
T Consensus 146 PP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~-R~ALn 219 (944)
T PRK14949 146 PP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSM-RDALS 219 (944)
T ss_pred cC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHH
Confidence 43 356666678888889888887 66 668899999988888777655432222 2334677777777643 33444
Q ss_pred HHH
Q 005014 330 LCT 332 (719)
Q Consensus 330 l~~ 332 (719)
++.
T Consensus 220 LLd 222 (944)
T PRK14949 220 LTD 222 (944)
T ss_pred HHH
Confidence 443
No 203
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.26 E-value=2.5e-11 Score=128.98 Aligned_cols=175 Identities=29% Similarity=0.445 Sum_probs=121.8
Q ss_pred ccchHHHHHHHHHHHHcccCChhhHhhhCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh-hccc-ch
Q 005014 122 VGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-ES 198 (719)
Q Consensus 122 i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~-~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~-~~~g-~~ 198 (719)
|.|.+++++.+...+...++...+...+.. ..+.++||+||||||||++|++||+.++.+|+.+++..+.. .|.| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 899999999988777543322211111111 13578999999999999999999999999999999887764 4666 34
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 005014 199 ESNLRKAFEEAE-------------------------------------------------------------------- 210 (719)
Q Consensus 199 ~~~l~~vf~~a~-------------------------------------------------------------------- 210 (719)
+..++.+|+.|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 455555544440
Q ss_pred ----------------------------------------------------------------------hcCCcEEEEc
Q 005014 211 ----------------------------------------------------------------------KNAPSIIFID 220 (719)
Q Consensus 211 ----------------------------------------------------------------------~~~p~iL~iD 220 (719)
...-.|+|||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0134699999
Q ss_pred cccccCCCCCCCchHHH-HHHHHHHHHHhhcc--------cCCCcEEEEEec----CCCCCCCHHhhccCCCceEEEeCC
Q 005014 221 EIDSIAPKREKTHGEVE-RRIVSQLLTLMDGL--------KSRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDIGV 287 (719)
Q Consensus 221 Eid~l~~~~~~~~~~~~-~~v~~~L~~~l~~~--------~~~~~vivI~at----n~~~~ld~al~r~~Rf~~~i~i~~ 287 (719)
|||.++...+....++. .-+.+.|+.++++- -...++++|++- ..|+++-|.|. |||+..+.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCC
Confidence 99999976532222222 23556788888762 224578888643 34666778887 59999999999
Q ss_pred CChHHHHHHHH
Q 005014 288 PDEVGRLEVLR 298 (719)
Q Consensus 288 P~~~~R~~il~ 298 (719)
++.+...+||.
T Consensus 335 L~~~dL~~ILt 345 (443)
T PRK05201 335 LTEEDFVRILT 345 (443)
T ss_pred CCHHHHHHHhc
Confidence 99999999884
No 204
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.6e-10 Score=130.88 Aligned_cols=185 Identities=18% Similarity=0.272 Sum_probs=124.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|++|.|.+..++.|+..+... .-+..+||+||+|+||||+|+.+|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 345678999999999999888777541 123357999999999999999999998763
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.. ...-..++.+.+.+ ..+...|+||||+|.|.. ...+.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHH
Confidence 12222211 01123345554443 234456999999998852 234667
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCc
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 323 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 323 (719)
+..|+.- ...+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++-...|+..+....+. ++..+..++..+.|-.
T Consensus 140 LKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~ 214 (647)
T PRK07994 140 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSM 214 (647)
T ss_pred HHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 7777763 3466667778888899999988 75 788999999998888887665432222 2334677787777754
Q ss_pred cccHHHHHH
Q 005014 324 GADLAALCT 332 (719)
Q Consensus 324 ~~dl~~l~~ 332 (719)
+ +...++.
T Consensus 215 R-~Al~lld 222 (647)
T PRK07994 215 R-DALSLTD 222 (647)
T ss_pred H-HHHHHHH
Confidence 3 3333443
No 205
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.26 E-value=3.2e-10 Score=111.95 Aligned_cols=167 Identities=22% Similarity=0.336 Sum_probs=116.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 189 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~ 189 (719)
..+.+.++++.|++.+++.|.+-...-+. -.+..++||+|+.|||||++++++..+. |..++.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 35678899999999999998766543221 2467889999999999999999998876 56778887665
Q ss_pred hhhhcccchHHHHHHHHHHHH-hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc--CCCcEEEEEecCCC
Q 005014 190 IMSKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRP 266 (719)
Q Consensus 190 l~~~~~g~~~~~l~~vf~~a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~--~~~~vivI~atn~~ 266 (719)
+. .+..+++... ...+-|||+|++.+=. .+ . -...|..+|++-- ...+|++.+|+|+.
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsFe~--~d-----~---~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSFEE--GD-----T---EYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCCCC--Cc-----H---HHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 53 2333444433 3356799999976322 11 1 1255667777643 23578888998875
Q ss_pred CCCCH---------------------HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC
Q 005014 267 NSIDP---------------------ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS 307 (719)
Q Consensus 267 ~~ld~---------------------al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~ 307 (719)
.-+.. .+.-..||.-.+.|..|+.++-++|++.++....+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 33321 222235999999999999999999999988655544
No 206
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.26 E-value=2.5e-10 Score=124.03 Aligned_cols=217 Identities=27% Similarity=0.322 Sum_probs=130.6
Q ss_pred ccchHHHHHHHHHHHHcccCChhhHhh--hCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh-hcccc
Q 005014 122 VGGVRKQMAQIRELVELPLRHPQLFKS--IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 197 (719)
Q Consensus 122 i~G~~~~~~~l~~~~~~~l~~~~~~~~--l~~-~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~-~~~g~ 197 (719)
|.|.+.+++.+...+..+++.-..... -.+ .+..++||+||||||||++|+++|..++.+|+.+++..+.. .|.|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999887665332211100000 011 24568999999999999999999999999999999987653 45564
Q ss_pred h-HHHHHHHHHH----HHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhccc-----------CCCcEE
Q 005014 198 S-ESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLK-----------SRAHVI 258 (719)
Q Consensus 198 ~-~~~l~~vf~~----a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~-----------~~~~vi 258 (719)
. +..+..+++. .....+++|||||||.+......+. +.-...+.+.|+.+|++-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 3 3334444432 2334678999999999987632211 1111245677888887421 011334
Q ss_pred EEEecCCCC----------------------------------------------------CCCHHhhccCCCceEEEeC
Q 005014 259 VIGATNRPN----------------------------------------------------SIDPALRRFGRFDREIDIG 286 (719)
Q Consensus 259 vI~atn~~~----------------------------------------------------~ld~al~r~~Rf~~~i~i~ 286 (719)
+|.|+|... .+.|++. +|++..+.+.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 444444300 0123332 5899999999
Q ss_pred CCChHHHHHHHHH----Hhc---------CCCCC-CcccHHHHHHH--hCCCccccHHHHHHHHHHHHHH
Q 005014 287 VPDEVGRLEVLRI----HTK---------NMKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIR 340 (719)
Q Consensus 287 ~P~~~~R~~il~~----~~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~ 340 (719)
+.+.+...+|+.. ..+ ++.+. .+.-+..+++. ..+|-.+.+..++.......+.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 9999999888862 221 11111 22235566664 3455566676666665554443
No 207
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.26 E-value=5.3e-11 Score=110.91 Aligned_cols=122 Identities=45% Similarity=0.685 Sum_probs=84.9
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhh---HHHHHHHHHhCCCEEEEEeccchhh
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEAN---VREIFDKARQSAPCVLFFDELDSIA 499 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~---i~~~f~~a~~~~p~il~iDEid~l~ 499 (719)
...+++++||||||||++++.++... +.+++.+++.+....+....... ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34569999999999999999999998 88889998877654432211111 1222334445667899999999862
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHhcCCCC----CCcEEEEEecCCCC--CCCcccCCCCCcceEEEeCC
Q 005014 500 TQRGSSVGDAGGAADRVLNQLLTEMDGMSA----KKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 563 (719)
Q Consensus 500 ~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~----~~~v~vi~atn~~~--~ld~allrpgRf~~~i~~~~ 563 (719)
. .....++..+..... ..++.+|++||... .+++.+.. ||+.++++++
T Consensus 98 ~--------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 R--------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred H--------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1 223445555554432 35788899999877 67778776 9998888874
No 208
>PLN03025 replication factor C subunit; Provisional
Probab=99.26 E-value=1.4e-10 Score=123.34 Aligned_cols=182 Identities=19% Similarity=0.204 Sum_probs=117.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC-----eEEEEec
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCING 187 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~-----~~i~v~~ 187 (719)
+..+-+++++.|.++.++.|+.++.. ....++||+|||||||||+|+++|+++.. .++.+++
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 45667899999999998888877643 11236999999999999999999999732 3555665
Q ss_pred hhhhhhcccchHHHHHHHHHHHH-------hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEE
Q 005014 188 PEIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVI 260 (719)
Q Consensus 188 ~~l~~~~~g~~~~~l~~vf~~a~-------~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI 260 (719)
++..+ -..++..+.... .....+++|||+|.+... ....|+..++..... ..++
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~~--t~~i 133 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSNT--TRFA 133 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccCC--ceEE
Confidence 54321 112332222211 123579999999988532 124455666544332 3344
Q ss_pred EecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHH
Q 005014 261 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 333 (719)
Q Consensus 261 ~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 333 (719)
.++|.+..+.+++++ |+ ..+.++.|+.++....++..++...+. .+..+..++..+. +|+..++..
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~----gDlR~aln~ 200 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD----GDMRQALNN 200 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHH
Confidence 567777888888887 55 568999999999988888766443222 2334677776655 455544443
No 209
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=2.8e-10 Score=126.46 Aligned_cols=193 Identities=22% Similarity=0.261 Sum_probs=127.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEE--------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-------- 184 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~-------- 184 (719)
+..+-+|+++.|.+..++.|+..+.. -..+..+||+||+||||||+|+++|+.+++....
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 45566899999999999888776543 1234579999999999999999999998753210
Q ss_pred ----Eechhhhhh----------cccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHH
Q 005014 185 ----INGPEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT 246 (719)
Q Consensus 185 ----v~~~~l~~~----------~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~ 246 (719)
-+|..+... ........++.+++.+.. ....+++|||+|.+.. ...+.|+.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk 150 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLK 150 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHH
Confidence 011111100 011123556777776643 2346999999998742 22455666
Q ss_pred HhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccc
Q 005014 247 LMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 325 (719)
Q Consensus 247 ~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~ 325 (719)
.++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++.++...+++..++..... ++..+..++..+.|. .+
T Consensus 151 ~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~Gs-lR 224 (507)
T PRK06645 151 TLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGS-AR 224 (507)
T ss_pred HHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 66642 3456666677778889888887 66 568899999999999988776544332 233477788887763 34
Q ss_pred cHHHHHHHH
Q 005014 326 DLAALCTEA 334 (719)
Q Consensus 326 dl~~l~~~a 334 (719)
++..++..+
T Consensus 225 ~al~~Ldka 233 (507)
T PRK06645 225 DAVSILDQA 233 (507)
T ss_pred HHHHHHHHH
Confidence 444444443
No 210
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.24 E-value=1.1e-10 Score=128.60 Aligned_cols=167 Identities=25% Similarity=0.390 Sum_probs=106.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCC
Q 005014 154 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~ 228 (719)
..+++|+||+|+|||+|++++++++ +..++++++.++...+...........|.... ..+.+|+|||++.+...
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 3469999999999999999999886 56788898877655433221111111122211 23579999999988643
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCC---CCHHhhccCCCc--eEEEeCCCChHHHHHHHHHHhcC
Q 005014 229 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN 303 (719)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~---ld~al~r~~Rf~--~~i~i~~P~~~~R~~il~~~~~~ 303 (719)
.. ....+...++.+......+|++++..|.. +++.+++ ||. ..+.+++|+.+.|..|++..+..
T Consensus 215 ~~---------~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 ER---------TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred HH---------HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 21 12334555554433444566666666654 4577776 675 47899999999999999987654
Q ss_pred CCCC-CcccHHHHHHHhCCCccccHHHHHHH
Q 005014 304 MKLS-DDVDLERIAKDTHGYVGADLAALCTE 333 (719)
Q Consensus 304 ~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 333 (719)
..+. .+..+..++....+- .+++...+..
T Consensus 284 ~~~~l~~e~l~~ia~~~~~~-~r~l~~~l~~ 313 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRSN-VRELEGALNR 313 (405)
T ss_pred cCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 3332 333477788776653 2344444433
No 211
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.24 E-value=1.4e-10 Score=123.54 Aligned_cols=158 Identities=25% Similarity=0.376 Sum_probs=108.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
+..+-+++++.|.+..++.+...+... ..+..+||+||||+|||++++++++.++..++.+++.+ .
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~ 79 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C 79 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c
Confidence 455678999999999999888887521 12345677999999999999999999998888888876 1
Q ss_pred hcccchHHHHHHHHHHH-HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCH
Q 005014 193 KLAGESESNLRKAFEEA-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 271 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a-~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~ 271 (719)
. .......+....... ....+.+++|||+|.+... + ....|...++... ..+.+|.++|.+..+.+
T Consensus 80 ~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------~----~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 80 R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------D----AQRHLRSFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------H----HHHHHHHHHHhcC--CCceEEEEcCChhhchH
Confidence 1 111112222221111 1135689999999977311 1 1233445555543 34566678888889999
Q ss_pred HhhccCCCceEEEeCCCChHHHHHHHHHH
Q 005014 272 ALRRFGRFDREIDIGVPDEVGRLEVLRIH 300 (719)
Q Consensus 272 al~r~~Rf~~~i~i~~P~~~~R~~il~~~ 300 (719)
++++ |+ ..+.++.|+.+++..+++..
T Consensus 147 ~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 147 PLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 9998 77 47899999999998877643
No 212
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.5e-10 Score=123.46 Aligned_cols=175 Identities=21% Similarity=0.277 Sum_probs=117.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 182 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~---------- 182 (719)
+..+-+|+++.|.+..++.++..+... ..+..+||+||+|+||||+|+++|+.+.+..
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 455678999999999999988777531 1234589999999999999999999986421
Q ss_pred --------------EEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 183 --------------FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 183 --------------i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
+.+++.. ...-..++.+.+.... ....+++|||+|.+.. ...+.|
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naL 139 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNAL 139 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHH
Confidence 1121110 0122345555554432 2346999999998742 123456
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCC-CCcccHHHHHHHhCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 321 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g 321 (719)
+..++... ..+.+|.+|+.++.+.+.+++ |+ ..+.+++|+.++..++++..++.... .++..+..++..+.|
T Consensus 140 Lk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 140 LKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred HHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66666533 345556667777888888886 66 67899999999999888876554332 233346667777665
No 213
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.24 E-value=2.9e-10 Score=128.53 Aligned_cols=180 Identities=21% Similarity=0.320 Sum_probs=115.8
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEechh
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCINGPE 189 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v~~~~ 189 (719)
+.|.|-++++++|..++.-.+.. -.++..++|+|+||||||++++.+..++ ...+++|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56888899998888877643321 1233345799999999999999998765 14578999954
Q ss_pred hhhh----------cc------c-chHHHHHHHHHHHHh--cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 005014 190 IMSK----------LA------G-ESESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 250 (719)
Q Consensus 190 l~~~----------~~------g-~~~~~l~~vf~~a~~--~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~ 250 (719)
+... .. + .....+..+|..... ....||+|||||.|.... +.++-.|..+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 3211 10 1 122345556655422 335699999999997532 223344444332
Q ss_pred ccCCCcEEEEEecCC---CCCCCHHhhccCCCce-EEEeCCCChHHHHHHHHHHhcCCC-CCCcccHHHHHHHh
Q 005014 251 LKSRAHVIVIGATNR---PNSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKDT 319 (719)
Q Consensus 251 ~~~~~~vivI~atn~---~~~ld~al~r~~Rf~~-~i~i~~P~~~~R~~il~~~~~~~~-l~~~~~l~~la~~t 319 (719)
.....++|||++|. ++.+++.+++ ||.. ++.|++++.++..+||+..+.... ..++..+..+|+..
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV 968 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV 968 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 23457889999986 4466777776 5543 478899999999999987766432 22333355565533
No 214
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.2e-10 Score=133.42 Aligned_cols=183 Identities=21% Similarity=0.302 Sum_probs=123.9
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
..+|+++.|++.+++.|...+.. + +.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 45799999999999999876642 1 234458999999999999999999887431
Q ss_pred -----------EEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHH
Q 005014 455 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 519 (719)
Q Consensus 455 -----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ 519 (719)
++.+++.. ...-..++.+.+.+.. ....|+||||+|.+. ....+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~na 139 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNA 139 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHH
Confidence 12222211 0112344555443332 335699999999873 235778
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCC
Q 005014 520 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGF 598 (719)
Q Consensus 520 ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~ 598 (719)
||..|+... ...++|++|+.++.+.+.+.+ |+. ++.|+.++..+...+++..+++.++.- +..+..++..+.|
T Consensus 140 LLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888654 345666666777777788876 775 789999999999999988887765432 2235566666654
Q ss_pred CHHHHHHHHHH
Q 005014 599 SGADITEICQR 609 (719)
Q Consensus 599 sg~di~~~~~~ 609 (719)
+.+++.+.++.
T Consensus 214 dlr~al~~Lek 224 (585)
T PRK14950 214 SMRDAENLLQQ 224 (585)
T ss_pred CHHHHHHHHHH
Confidence 66665555554
No 215
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.22 E-value=3e-10 Score=115.48 Aligned_cols=182 Identities=26% Similarity=0.412 Sum_probs=114.7
Q ss_pred cCCCCccccccchHHHHHH---HHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe---EEEEe
Q 005014 113 RLDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCIN 186 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~---l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~---~i~v~ 186 (719)
++.+-+++|.+|.+..+.+ |+.+++. ..-..++|+|||||||||||+.|+.....+ |+.++
T Consensus 131 rmRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred hcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 3445577888887776544 3333332 223469999999999999999999987654 66655
Q ss_pred chhhhhhcccchHHHHHHHHHHHHh-----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEE
Q 005014 187 GPEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 261 (719)
Q Consensus 187 ~~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~ 261 (719)
... ..-+.++.+|+.+.. ....|||||||+.+-...+ ..++ ..-.++.|++||
T Consensus 198 At~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fL----P~VE~G~I~lIG 255 (554)
T KOG2028|consen 198 ATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFL----PHVENGDITLIG 255 (554)
T ss_pred ccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hccc----ceeccCceEEEe
Confidence 422 223568888888765 3568999999998754322 1122 223456788887
Q ss_pred ecC-CC-CCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhc----------CCCC----CCcccHHHHHHHhCCCccc
Q 005014 262 ATN-RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK----------NMKL----SDDVDLERIAKDTHGYVGA 325 (719)
Q Consensus 262 atn-~~-~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~----------~~~l----~~~~~l~~la~~t~g~~~~ 325 (719)
+|. .| -.++.+|.+ |+ +.+.+.....++-..||..-.. .++. .++.-++.++..+.|-...
T Consensus 256 ATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred cccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 664 34 367888887 55 4466666777777777754211 1111 1223467778888876555
Q ss_pred cHHHHHH
Q 005014 326 DLAALCT 332 (719)
Q Consensus 326 dl~~l~~ 332 (719)
.+..|-.
T Consensus 333 aLN~Lem 339 (554)
T KOG2028|consen 333 ALNALEM 339 (554)
T ss_pred HHHHHHH
Confidence 5544433
No 216
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.22 E-value=2.4e-10 Score=125.87 Aligned_cols=171 Identities=23% Similarity=0.334 Sum_probs=118.7
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHH----HhCCCEEEEEeccchhhc
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIAT 500 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~il~iDEid~l~~ 500 (719)
++.+-+||+||||-||||||+.+|+.+|+.++.|+++|=.+.- .-...|..+.+.- ....|.++++||||.-.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 3445589999999999999999999999999999999854311 1122222222221 12578999999998631
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhcC-------CCCC------------CcEEEEEecCCCCCCCcccC--CCCCcceEE
Q 005014 501 QRGSSVGDAGGAADRVLNQLLTEMDG-------MSAK------------KTVFIIGATNRPDIIDPALL--RPGRLDQLI 559 (719)
Q Consensus 501 ~r~~~~~~~~~~~~~~~~~ll~~ld~-------~~~~------------~~v~vi~atn~~~~ld~all--rpgRf~~~i 559 (719)
...++.+|..+.. -... -..-|||.||. ..-|||. | =|-.+|
T Consensus 401 -------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr--~~A~ii 463 (877)
T KOG1969|consen 401 -------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLR--PFAEII 463 (877)
T ss_pred -------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcc--cceEEE
Confidence 3345555554441 1110 02468999995 5567774 4 388999
Q ss_pred EeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q 005014 560 YIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 618 (719)
Q Consensus 560 ~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~ 618 (719)
+|++|......+=|+..+.+..+. .|...|...++ ++..||++.++.....+....
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 999999888888888888776665 56666666666 566799999999888886643
No 217
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.6e-10 Score=129.15 Aligned_cols=184 Identities=18% Similarity=0.281 Sum_probs=130.3
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------------- 453 (719)
..+|+++.|++.+++.|...+.. -..+..+|||||+|+|||++|+++|..+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 35799999999999999877642 134456999999999999999999998642
Q ss_pred ----------eEEEEeccchhhhccCCchhhHHHHHHHHHhC----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHH
Q 005014 454 ----------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 519 (719)
Q Consensus 454 ----------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ 519 (719)
+++.+++.+- .+...++.+...+... ...|++|||+|.+. ....+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~na 140 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNA 140 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHH
Confidence 2333333211 1234566766665433 24699999999873 235788
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHccCC
Q 005014 520 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQGF 598 (719)
Q Consensus 520 ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-d~~~la~~~~~~ 598 (719)
||..|+... ...++|++|+.+..|-+++++ |+. ++.|.+++.++....++..+++.++.-+. .+..|+..+. .
T Consensus 141 LLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~-g 214 (614)
T PRK14971 141 FLKTLEEPP--SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD-G 214 (614)
T ss_pred HHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 999988653 345666666677888889887 875 79999999999999999888777665332 3667777664 3
Q ss_pred CHHHHHHHHHHH
Q 005014 599 SGADITEICQRA 610 (719)
Q Consensus 599 sg~di~~~~~~A 610 (719)
+.+++.+.+...
T Consensus 215 dlr~al~~Lekl 226 (614)
T PRK14971 215 GMRDALSIFDQV 226 (614)
T ss_pred CHHHHHHHHHHH
Confidence 556665555443
No 218
>PRK06893 DNA replication initiation factor; Validated
Probab=99.21 E-value=2.8e-10 Score=115.07 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=96.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 231 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~ 231 (719)
..++|+||||||||+|++++|+++ +....+++..... .....+++.. ....+|+|||++.+..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 358999999999999999999886 2333444432211 1111223322 2457999999998864321
Q ss_pred CchHHHHHHHHHHHHHhhcccCCC-cEEEEEecCCCCCCC---HHhhccCCCceEEEeCCCChHHHHHHHHHHhc--CCC
Q 005014 232 THGEVERRIVSQLLTLMDGLKSRA-HVIVIGATNRPNSID---PALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMK 305 (719)
Q Consensus 232 ~~~~~~~~v~~~L~~~l~~~~~~~-~vivI~atn~~~~ld---~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~--~~~ 305 (719)
....|..+++...... .+++++++..|..++ +.+++..++...+.++.|+.++|.+|++..+. ++.
T Consensus 109 --------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 --------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred --------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1123555555554433 455666666776654 78888666677899999999999999986653 444
Q ss_pred CCCcccHHHHHHHhCC
Q 005014 306 LSDDVDLERIAKDTHG 321 (719)
Q Consensus 306 l~~~~~l~~la~~t~g 321 (719)
+.++ -+..++++..|
T Consensus 181 l~~~-v~~~L~~~~~~ 195 (229)
T PRK06893 181 LSDE-VANFLLKRLDR 195 (229)
T ss_pred CCHH-HHHHHHHhccC
Confidence 4433 36777777765
No 219
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=1.8e-10 Score=127.27 Aligned_cols=156 Identities=19% Similarity=0.345 Sum_probs=101.4
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEechhhhhhcccchH-HHHHHHHHHHHhcCCcEEEEccccccCCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~iL~iDEid~l~~~ 228 (719)
.+++||||+|||||+|++++++.+ +..++++++.++...+..... ..+.. |.......+.+|+|||++.+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999985 456788888876654432111 11112 22222235789999999988643
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC---CHHhhccCCCceEEEeCCCChHHHHHHHHHHhc--C
Q 005014 229 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--N 303 (719)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l---d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~--~ 303 (719)
.. ....+...++.+......+|+++.+.|..+ .+.+++.......+.+.+|+.+.|..|++..+. .
T Consensus 210 ~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~ 280 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH 280 (440)
T ss_pred HH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC
Confidence 21 112344445544444455666666777654 455665223345778999999999999987765 3
Q ss_pred CCCCCcccHHHHHHHhCC
Q 005014 304 MKLSDDVDLERIAKDTHG 321 (719)
Q Consensus 304 ~~l~~~~~l~~la~~t~g 321 (719)
+.++++ .+..++....|
T Consensus 281 ~~l~~e-v~~~Ia~~~~~ 297 (440)
T PRK14088 281 GELPEE-VLNFVAENVDD 297 (440)
T ss_pred CCCCHH-HHHHHHhcccc
Confidence 444433 37777777765
No 220
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.20 E-value=1.2e-10 Score=122.76 Aligned_cols=160 Identities=22% Similarity=0.367 Sum_probs=102.6
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-------CC--eEEEEe
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-------QA--NFISVK 459 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-------~~--~~i~v~ 459 (719)
...|+++.|++++++.|.-.... ....++||+||||||||++|++++..+ +. ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999877643221 112469999999999999999999987 22 222211
Q ss_pred c-cch--------hh---------------hccCCc--hhhH---HHHHHHH--HhCCCEEEEEeccchhhcccCCCCCC
Q 005014 460 G-PEL--------LT---------------MWFGES--EANV---REIFDKA--RQSAPCVLFFDELDSIATQRGSSVGD 508 (719)
Q Consensus 460 ~-~~l--------~~---------------~~~g~s--e~~i---~~~f~~a--~~~~p~il~iDEid~l~~~r~~~~~~ 508 (719)
+ +++ .. ..+|.. +..+ ...|+.- ....-.++|+|||+.+-
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 1 011 00 011100 0000 0011100 00112499999999863
Q ss_pred CCCchHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCCC-CCCcccCCCCCcceEEEeCCCCH-HHHHHHHHH
Q 005014 509 AGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-ESRLQIFKA 575 (719)
Q Consensus 509 ~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~atn~~~-~ld~allrpgRf~~~i~~~~p~~-~~r~~Il~~ 575 (719)
..+.+.|+..|+.-. ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|++.
T Consensus 142 -----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 142 -----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred -----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 456778888776432 234688999999755 58889998 9999999998866 999999987
Q ss_pred Hh
Q 005014 576 CL 577 (719)
Q Consensus 576 ~~ 577 (719)
..
T Consensus 215 ~~ 216 (334)
T PRK13407 215 RD 216 (334)
T ss_pred hh
Confidence 54
No 221
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=2.5e-10 Score=127.68 Aligned_cols=186 Identities=17% Similarity=0.232 Sum_probs=121.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|+++.|.+..++.|+..+... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 455678999999999999998887541 123458999999999999999999998653
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+... ..+.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-----------a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-----------SFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-----------HHHHH
Confidence 33333221 112234555555432 234469999999988522 24567
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCc
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 323 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 323 (719)
+..++... ..+.+|.+|+++..+.+.+++ |+ ..+.+..++..+-...++..++...+. .+..+..+++.+.| .
T Consensus 140 Lk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 77777643 356666677778888888877 55 556788777777666665554433322 23346777777765 3
Q ss_pred cccHHHHHHH
Q 005014 324 GADLAALCTE 333 (719)
Q Consensus 324 ~~dl~~l~~~ 333 (719)
.+++..++..
T Consensus 214 lR~al~lLdq 223 (509)
T PRK14958 214 VRDALSLLDQ 223 (509)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 222
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.20 E-value=7.9e-10 Score=106.94 Aligned_cols=169 Identities=21% Similarity=0.365 Sum_probs=123.1
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEecc
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP 461 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~ 461 (719)
...+.+...++.|++..|+.|.+.-...+ . | .+.+++||+|.-|||||+|+||+-++. +..++.|+..
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~-------~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFA-------E-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHH-------c-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 34456889999999999999876543221 1 2 345679999999999999999999886 4568888887
Q ss_pred chhhhccCCchhhHHHHHHHHHhC-CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCC--CCcEEEEEe
Q 005014 462 ELLTMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGA 538 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~a 538 (719)
++.. +-.+++..+.. ..-|||+|+.-. +. .+.-...|-..|||-.. ..+|+|.+|
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF----------e~---gd~~yK~LKs~LeG~ve~rP~NVl~YAT 180 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSF----------EE---GDDAYKALKSALEGGVEGRPANVLFYAT 180 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCC----------CC---CchHHHHHHHHhcCCcccCCCeEEEEEe
Confidence 7743 33445444433 245999998743 11 12345667777888643 458999999
Q ss_pred cCCCCCCCc--------------------ccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC
Q 005014 539 TNRPDIIDP--------------------ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK 584 (719)
Q Consensus 539 tn~~~~ld~--------------------allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~ 584 (719)
+||.+.|.. .+--+.||...+-|++++.++...|+..++++.+++.
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 999765542 1111349999999999999999999999999988774
No 223
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=2.6e-10 Score=127.51 Aligned_cols=156 Identities=19% Similarity=0.311 Sum_probs=104.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 229 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~ 229 (719)
..++|||++|||||+|++++++.+ +..++++++.++...+...........|.... ..+.+|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 359999999999999999999976 46778999888776554332222222343322 346899999999987442
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCC---CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCC--
Q 005014 230 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM-- 304 (719)
Q Consensus 230 ~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~---~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~-- 304 (719)
. ....|..+++.+.....-+||++...|. .+++.|++.......+.+..|+.+.|..||+..+...
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 1 1234555555555444445555544554 4678888844446677999999999999999776543
Q ss_pred CCCCcccHHHHHHHhCC
Q 005014 305 KLSDDVDLERIAKDTHG 321 (719)
Q Consensus 305 ~l~~~~~l~~la~~t~g 321 (719)
.+.. .-+..|+.+..+
T Consensus 465 ~l~~-eVi~yLa~r~~r 480 (617)
T PRK14086 465 NAPP-EVLEFIASRISR 480 (617)
T ss_pred CCCH-HHHHHHHHhccC
Confidence 3333 336777777654
No 224
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=4.4e-10 Score=123.86 Aligned_cols=186 Identities=22% Similarity=0.268 Sum_probs=125.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|+|+.|.+..++.|+..+... ..+.++||+||+|+||||+|+.+|+.+++.
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 345678999999999998888776531 234579999999999999999999976432
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.+- ..-..++.+.+.+.. ....+++|||+|.+.. ...+.|
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaL 136 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNAL 136 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHH
Confidence 234443211 123456666665532 3456999999998742 234567
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCc
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 323 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 323 (719)
+..++... ..+.+|.+|+.++.+.+.+++ |+ ..+.+..++.++....+...+...... ++..+..+++.+.| .
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777543 356666677778888888887 66 568899999988888887665543322 33347777888765 3
Q ss_pred cccHHHHHHH
Q 005014 324 GADLAALCTE 333 (719)
Q Consensus 324 ~~dl~~l~~~ 333 (719)
.+++..++..
T Consensus 211 lR~alslLdq 220 (491)
T PRK14964 211 MRNALFLLEQ 220 (491)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 225
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=3.5e-10 Score=127.56 Aligned_cols=193 Identities=19% Similarity=0.233 Sum_probs=125.0
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEE--------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-------- 184 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~-------- 184 (719)
++.+-+|++|+|.+..++.|+..+... ..+..+||+||+||||||+|+++|+.+++.-..
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 456678999999999999998887641 234579999999999999999999987653100
Q ss_pred Eechhhhh----------hcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 005014 185 INGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 250 (719)
Q Consensus 185 v~~~~l~~----------~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~ 250 (719)
-.|..+.. ......-..++.+++.+. .....|+||||+|.+.. ...+.|+..|+.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALLKtLEE 145 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAMLKTLEE 145 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHHHHHHh
Confidence 00100000 001112345666666542 23456999999987631 234567777775
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHH
Q 005014 251 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAA 329 (719)
Q Consensus 251 ~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~ 329 (719)
.. ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++-...|+..+....+. ++..+..|++.+.|- .+++..
T Consensus 146 Pp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gs-lRdAln 219 (709)
T PRK08691 146 PP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGS-MRDALS 219 (709)
T ss_pred CC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC-HHHHHH
Confidence 33 355666677888888888875 66 567888899988888887666544332 233477777777653 344444
Q ss_pred HHHHH
Q 005014 330 LCTEA 334 (719)
Q Consensus 330 l~~~a 334 (719)
++..+
T Consensus 220 LLDqa 224 (709)
T PRK08691 220 LLDQA 224 (709)
T ss_pred HHHHH
Confidence 44443
No 226
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=7.4e-10 Score=123.65 Aligned_cols=175 Identities=21% Similarity=0.287 Sum_probs=117.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+.+|+++.|.+..++.|..++... ..+..+||+|||||||||+|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 456778999999999999998887641 223457999999999999999999988531
Q ss_pred ------------EEEEechhhhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 005014 182 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 245 (719)
Q Consensus 182 ------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~ 245 (719)
++.+++.. ...-..++.+.+.+. ...+.++||||+|.+. ....+.|+
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHH
Confidence 23333321 111233444433332 2456799999998663 12345566
Q ss_pred HHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 246 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 246 ~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
..++.. ...+++|.+++.+..+.+.+++ |+ ..+.+..|+.++-...++..+....+. +...+..++..+.|
T Consensus 138 k~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 138 KTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 666543 2355666677888889998887 65 468999999999888887766543332 23346777777765
No 227
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.19 E-value=1.2e-09 Score=117.63 Aligned_cols=189 Identities=23% Similarity=0.315 Sum_probs=119.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEec
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCING 187 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~-----~~~i~v~~ 187 (719)
+..+-+|+++.|.+..++.|..++..+ ...+++|+||||||||++|+++++.+. ..++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 345567899999999999888876531 123699999999999999999999874 24577787
Q ss_pred hhhhhhcc-------------cc-------hHHHHHHHHHHHHh-----cCCcEEEEccccccCCCCCCCchHHHHHHHH
Q 005014 188 PEIMSKLA-------------GE-------SESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 242 (719)
Q Consensus 188 ~~l~~~~~-------------g~-------~~~~l~~vf~~a~~-----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~ 242 (719)
.++..... +. ....++.+.+.... ..+.+|+|||++.+... ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-----------~~~ 143 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-----------AQQ 143 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------HHH
Confidence 66532210 00 11223333333322 23469999999977421 223
Q ss_pred HHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 243 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 243 ~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
.|...++...... .+|.+++.+..+.+.+++ |+ ..+.+.+|+.++...+++..+....+. .+..+..++..+.
T Consensus 144 ~L~~~le~~~~~~--~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~- 217 (337)
T PRK12402 144 ALRRIMEQYSRTC--RFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG- 217 (337)
T ss_pred HHHHHHHhccCCC--eEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 4556666544332 333355555667777776 55 568999999999999998766543322 3334666776653
Q ss_pred CccccHHHHHHHH
Q 005014 322 YVGADLAALCTEA 334 (719)
Q Consensus 322 ~~~~dl~~l~~~a 334 (719)
+++..+....
T Consensus 218 ---gdlr~l~~~l 227 (337)
T PRK12402 218 ---GDLRKAILTL 227 (337)
T ss_pred ---CCHHHHHHHH
Confidence 4565554433
No 228
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.18 E-value=8.7e-11 Score=128.83 Aligned_cols=193 Identities=23% Similarity=0.328 Sum_probs=142.1
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeE-------E-----
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------I----- 456 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~-------i----- 456 (719)
...|+++.|++.+.+.|...+.. -+...+.||.||-|||||++||.+|+.+++.- .
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 45789999999999999988753 23456799999999999999999999876531 0
Q ss_pred -EEec---cchhh--hccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcC
Q 005014 457 -SVKG---PELLT--MWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 526 (719)
Q Consensus 457 -~v~~---~~l~~--~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~ 526 (719)
.++. .|++. .-...+-..+|.+-+.+.. ..+.|.+|||++.|. ....|.||+.++.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLEE 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLEE 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhccccc
Confidence 0110 11110 0011233557777777654 346799999999973 4578999999885
Q ss_pred CCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHccCCCHHHHHH
Q 005014 527 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITE 605 (719)
Q Consensus 527 ~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-~~~la~~~~~~sg~di~~ 605 (719)
+...|++|.||..++.+.+.+++ |+. +..|...+.++....++..+.+..+..+.+ +..+|+..+| |.+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 45679999999999999999998 885 788999999999999999998887765444 5556666554 6677777
Q ss_pred HHHHHHHH
Q 005014 606 ICQRACKY 613 (719)
Q Consensus 606 ~~~~A~~~ 613 (719)
++..|...
T Consensus 220 lLDq~i~~ 227 (515)
T COG2812 220 LLDQAIAF 227 (515)
T ss_pred HHHHHHHc
Confidence 77766555
No 229
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.18 E-value=7.4e-10 Score=114.32 Aligned_cols=133 Identities=24% Similarity=0.295 Sum_probs=90.7
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechh------hhhhcccchHHHH---------------------HHH
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE------IMSKLAGESESNL---------------------RKA 205 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~------l~~~~~g~~~~~l---------------------~~v 205 (719)
.+.++||.||||||||++|+++|..++.+++.++|.. +.+.+.+.....+ +.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3568999999999999999999999999999998743 3333322111111 011
Q ss_pred HHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc--------------CCCcEEEEEecCCCC----
Q 005014 206 FEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------------SRAHVIVIGATNRPN---- 267 (719)
Q Consensus 206 f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~--------------~~~~vivI~atn~~~---- 267 (719)
+... . ...+|++||++.+.++ +...|+..++... ....+.+|+|+|+..
T Consensus 100 ~~A~-~-~g~~lllDEi~r~~~~-----------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAV-R-EGFTLVYDEFTRSKPE-----------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHH-H-cCCEEEEcchhhCCHH-----------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 2212 2 3469999999986422 3345555554311 223567889999752
Q ss_pred -CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 268 -SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 268 -~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
.+++++.+ || ..+.++.|+.++..+|++.+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 55888887 87 678999999999999998764
No 230
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.17 E-value=5.4e-10 Score=104.02 Aligned_cols=121 Identities=48% Similarity=0.752 Sum_probs=79.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHH---HHHHHHHHHhcCCcEEEEccccccC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESN---LRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~~~~---l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
.+.+++|+||||||||++++.++..+ +..++.+++.+............ ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999998 78888888876654322211111 1222233444567899999999772
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccC----CCcEEEEEecCCCC--CCCHHhhccCCCceEEEeC
Q 005014 227 PKREKTHGEVERRIVSQLLTLMDGLKS----RAHVIVIGATNRPN--SIDPALRRFGRFDREIDIG 286 (719)
Q Consensus 227 ~~~~~~~~~~~~~v~~~L~~~l~~~~~----~~~vivI~atn~~~--~ld~al~r~~Rf~~~i~i~ 286 (719)
.. ....+...+..... ...+.+|++++... .+++.+.. |++.++.++
T Consensus 98 ~~-----------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG-----------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH-----------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 11 12334444444332 35677788888766 66777765 887766665
No 231
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=4.4e-10 Score=126.26 Aligned_cols=176 Identities=20% Similarity=0.236 Sum_probs=117.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|++|.|.+..++.|..++... .-...+||+||+|||||++|+++|+.+.+.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 355678999999999988888877541 113479999999999999999999998753
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHH----HHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++..- ..-..++.+.+. +......|+||||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naL 139 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNAL 139 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHH
Confidence 233332110 011223333222 2234457999999998842 234667
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCC-CCcccHHHHHHHhCCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 322 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 322 (719)
+..++... ..+++|.+|+.+..+.+.+++ |+ ..+.|..++.++...+|+..+....+ .+...+..++..+.|-
T Consensus 140 Lk~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 140 LKTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred HHHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77776532 356777778888888888876 65 46789999999888888766544332 2333466777776653
No 232
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.17 E-value=2.1e-09 Score=109.04 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=92.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC---CeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 231 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~---~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~ 231 (719)
.+++|+||+|||||+|+++++..+. ..+.+++...... ....+++.... ..+|+|||++.+..+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH--
Confidence 4799999999999999999998754 3345555443221 11122222221 2589999999885432
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCc-EEEEEecCCCCC---CCHHhhccCCCceEEEeCCCChHHHHHHHHHHhc--CCC
Q 005014 232 THGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNS---IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMK 305 (719)
Q Consensus 232 ~~~~~~~~v~~~L~~~l~~~~~~~~-vivI~atn~~~~---ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~--~~~ 305 (719)
.....|..+++.....++ -++++++++|.. +.+.+++.......+.+.+|+.+++.++++.... ++.
T Consensus 114 -------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~ 186 (235)
T PRK08084 114 -------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFE 186 (235)
T ss_pred -------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCC
Confidence 112334444444433333 355555566655 5789988333347889999999999999987543 344
Q ss_pred CCCcccHHHHHHHhCCC
Q 005014 306 LSDDVDLERIAKDTHGY 322 (719)
Q Consensus 306 l~~~~~l~~la~~t~g~ 322 (719)
+.++ -+..++++..|-
T Consensus 187 l~~~-v~~~L~~~~~~d 202 (235)
T PRK08084 187 LPED-VGRFLLKRLDRE 202 (235)
T ss_pred CCHH-HHHHHHHhhcCC
Confidence 4433 377788877753
No 233
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.16 E-value=3.6e-10 Score=110.89 Aligned_cols=143 Identities=23% Similarity=0.320 Sum_probs=96.9
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHhCCe------------------------EEEEeccchhhhccCCchhhHHHHHHH
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISVKGPELLTMWFGESEANVREIFDK 481 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~~~~------------------------~i~v~~~~l~~~~~g~se~~i~~~f~~ 481 (719)
.+..+|||||+|+|||++|+.++..+... +..+.... .. -+-..++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 44569999999999999999999886431 22221110 00 123456666666
Q ss_pred HHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcce
Q 005014 482 ARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 557 (719)
Q Consensus 482 a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~ 557 (719)
+.. ....|+||||+|.+. ....+.||..|+... ...++|++||.++.+.+++.+ |+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~~- 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN--------------EAAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RCQ- 148 (188)
T ss_pred HccCcccCCeEEEEEechhhhC--------------HHHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hcE-
Confidence 544 345799999999873 234677888888733 345566667777999999988 774
Q ss_pred EEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccC
Q 005014 558 LIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 597 (719)
Q Consensus 558 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~ 597 (719)
.+.|++|+.++...+++.. +++ +..+..++..+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999998888776 232 2235555555443
No 234
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=7.8e-10 Score=129.49 Aligned_cols=175 Identities=19% Similarity=0.228 Sum_probs=116.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++...+|++|+|.+..++.|+..+... ..+..+||+||+||||||+++.||+.+.+.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 456678999999999999888887531 123358999999999999999999998752
Q ss_pred ---------------EEEEechhhhhhcccchHHHHHHHHHH----HHhcCCcEEEEccccccCCCCCCCchHHHHHHHH
Q 005014 182 ---------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 242 (719)
Q Consensus 182 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~ 242 (719)
++.+++... ..-..++.+.+. .......|+||||+|.|.. ...+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHH
Confidence 122222110 012233443332 2334557999999998852 2345
Q ss_pred HHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 243 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 243 ~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
.|++.|+... ..+++|.+|+.++.|-+.+++ |+ ..+.|..++.++...+|...++...+. ++..+..+++...|
T Consensus 139 aLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6778887643 355666667777888888887 65 678898888888888887766443332 22335666666655
No 235
>PHA02244 ATPase-like protein
Probab=99.16 E-value=5.4e-10 Score=117.19 Aligned_cols=122 Identities=21% Similarity=0.296 Sum_probs=80.2
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCeEEEEecc----chhhhccCCchhhH-HHHHHHHHhCCCEEEEEeccchhhcc
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWFGESEANV-REIFDKARQSAPCVLFFDELDSIATQ 501 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~----~l~~~~~g~se~~i-~~~f~~a~~~~p~il~iDEid~l~~~ 501 (719)
...++|+||||||||++|+++|..++.+|+.++.- ++.+ +++....-. ..++...+ ...+++|||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK--KGGLFFIDEIDASIP- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh--cCCEEEEeCcCcCCH-
Confidence 34699999999999999999999999999998742 1111 111111111 12223222 346999999998632
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhcC--------C-CCCCcEEEEEecCCC-----------CCCCcccCCCCCcceEEEe
Q 005014 502 RGSSVGDAGGAADRVLNQLLTEMDG--------M-SAKKTVFIIGATNRP-----------DIIDPALLRPGRLDQLIYI 561 (719)
Q Consensus 502 r~~~~~~~~~~~~~~~~~ll~~ld~--------~-~~~~~v~vi~atn~~-----------~~ld~allrpgRf~~~i~~ 561 (719)
.+...|...++. . ....++.+|+|+|.+ ..+++|++. ||- .|+|
T Consensus 195 -------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~ 258 (383)
T PHA02244 195 -------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEF 258 (383)
T ss_pred -------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeC
Confidence 233333333432 1 123578999999973 567999998 995 7999
Q ss_pred CCCCHHH
Q 005014 562 PLPDEES 568 (719)
Q Consensus 562 ~~p~~~~ 568 (719)
+.|+..+
T Consensus 259 dyp~~~E 265 (383)
T PHA02244 259 DYDEKIE 265 (383)
T ss_pred CCCcHHH
Confidence 9998433
No 236
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.16 E-value=5.2e-10 Score=112.00 Aligned_cols=155 Identities=24% Similarity=0.475 Sum_probs=97.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHH-HHHHHHHHHHhcCCcEEEEccccccCCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~iL~iDEid~l~~~ 228 (719)
..++||||+|+|||+|++++++++ +..++++++.++...+...... .+.. |.... ....+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~-~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRL-RSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHH-CTSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhh-hcCCEEEEecchhhcCc
Confidence 469999999999999999998874 4568888888776544322211 1112 22221 24569999999998632
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC---CHHhhccCCCceEEEeCCCChHHHHHHHHHHhc--C
Q 005014 229 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--N 303 (719)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l---d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~--~ 303 (719)
.+....|..+++.+...+..+|+++...|..+ ++.+++.-.....+.+..|+.+.|.+|++.... +
T Consensus 113 ---------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 113 ---------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred ---------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 23445677777776666667777776777654 677777333445789999999999999987654 3
Q ss_pred CCCCCcccHHHHHHHhCC
Q 005014 304 MKLSDDVDLERIAKDTHG 321 (719)
Q Consensus 304 ~~l~~~~~l~~la~~t~g 321 (719)
+.+.++ -+..++....+
T Consensus 184 ~~l~~~-v~~~l~~~~~~ 200 (219)
T PF00308_consen 184 IELPEE-VIEYLARRFRR 200 (219)
T ss_dssp --S-HH-HHHHHHHHTTS
T ss_pred CCCcHH-HHHHHHHhhcC
Confidence 444333 36666666553
No 237
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.2e-09 Score=122.04 Aligned_cols=175 Identities=18% Similarity=0.274 Sum_probs=115.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|+++.|.+..++.|...+... ..+..+||+||+|+||||+|+.+|+.+.+.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 345678999999999999888777531 123458999999999999999999988641
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.. .. .-..++.+++.+. .....|++|||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas----~~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAAS----RT--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeeccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHH
Confidence 22222211 01 1123444444432 23456999999988742 234567
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
+..++... ..+.+|.+|+++..+.+.+++ |+ ..+++..++.++-...++..++...+. +...+..++..+.|
T Consensus 140 LK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G 212 (546)
T PRK14957 140 LKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG 212 (546)
T ss_pred HHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77777532 355566666778888878876 66 778999999988777777655443332 23345667777654
No 238
>PRK08727 hypothetical protein; Validated
Probab=99.15 E-value=1.2e-09 Score=110.71 Aligned_cols=145 Identities=26% Similarity=0.385 Sum_probs=93.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 231 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~ 231 (719)
..++|+||+|||||+|+++++..+ +....+++..++. ..+..+++.. ....+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCChH-
Confidence 459999999999999999997764 4455566544332 2233344433 3446999999998864331
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC---CHHhhccCCC--ceEEEeCCCChHHHHHHHHHHhc--CC
Q 005014 232 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTK--NM 304 (719)
Q Consensus 232 ~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l---d~al~r~~Rf--~~~i~i~~P~~~~R~~il~~~~~--~~ 304 (719)
....+..+++....+..-+++++...|..+ .+.+++ || ...+.++.|+.+++.++++..+. ++
T Consensus 111 --------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 111 --------DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred --------HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 112344555544433333445455566655 688887 64 56789999999999999997553 34
Q ss_pred CCCCcccHHHHHHHhCC
Q 005014 305 KLSDDVDLERIAKDTHG 321 (719)
Q Consensus 305 ~l~~~~~l~~la~~t~g 321 (719)
.+.. ..+..++..+.|
T Consensus 181 ~l~~-e~~~~La~~~~r 196 (233)
T PRK08727 181 ALDE-AAIDWLLTHGER 196 (233)
T ss_pred CCCH-HHHHHHHHhCCC
Confidence 3333 347777777664
No 239
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.15 E-value=1.8e-09 Score=109.25 Aligned_cols=168 Identities=14% Similarity=0.297 Sum_probs=102.0
Q ss_pred CCccccc--cchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhh
Q 005014 116 EVGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 190 (719)
Q Consensus 116 ~~~~~~i--~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l 190 (719)
..+|++. ++-+..+..++++.. +.....+++|+||+|||||+|+++++... +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3456663 344555555555443 12345689999999999999999999875 567788887665
Q ss_pred hhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCc-EEEEEecCCCC--
Q 005014 191 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPN-- 267 (719)
Q Consensus 191 ~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~-vivI~atn~~~-- 267 (719)
... + .......+|+|||++.+... ....|...++....... +++++++..+.
T Consensus 82 ~~~------------~--~~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 82 LLA------------F--DFDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred HHH------------H--hhcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC
Confidence 321 1 11234569999999976421 11334555555444444 34444443332
Q ss_pred CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC--CCCCCcccHHHHHHHhCC
Q 005014 268 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHG 321 (719)
Q Consensus 268 ~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~--~~l~~~~~l~~la~~t~g 321 (719)
.+.+.+++..+....+.+++|+..++..++...... +.+.. .-+..++....|
T Consensus 137 ~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~-~al~~L~~~~~g 191 (227)
T PRK08903 137 PLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLAD-EVPDYLLTHFRR 191 (227)
T ss_pred CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhccC
Confidence 345666652222578999999999888888765543 33332 236666665444
No 240
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.4e-09 Score=122.85 Aligned_cols=175 Identities=18% Similarity=0.254 Sum_probs=115.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|++|.|.+..++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 355668999999999999998887641 223358999999999999999999987642
Q ss_pred ---------------EEEEechhhhhhcccchHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCchHHHHHHHH
Q 005014 182 ---------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 242 (719)
Q Consensus 182 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~ 242 (719)
++.+++... ..-..++.+.+.+ ......|++|||+|.+... ..+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-----------A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-----------GFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-----------HHH
Confidence 122222110 0122344443332 2334569999999988422 345
Q ss_pred HHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 243 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 243 ~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
.|+..|+... ..+++|.+|+.++.+.+.+++ |. ..+.|..++.++-...+...++..... ++..+..++..+.|
T Consensus 137 ALLK~LEEpp--~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 137 ALLKIVEEPP--EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777777533 366667677778889999987 64 678999998888887777666543332 22335556555544
No 241
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=5e-10 Score=123.37 Aligned_cols=155 Identities=20% Similarity=0.365 Sum_probs=99.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 231 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~ 231 (719)
.+++||||+|+|||+|++++++.+ +..++++++.++...+.......-...|.... ..+.+|+|||++.+..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999876 57778888776654332211111111233322 3467999999998864321
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCC---CCCHHhhccCCCc--eEEEeCCCChHHHHHHHHHHhcCCCC
Q 005014 232 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKL 306 (719)
Q Consensus 232 ~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~---~ld~al~r~~Rf~--~~i~i~~P~~~~R~~il~~~~~~~~l 306 (719)
....+...++.+......+|++++..|. .+++.+++ ||. ..+.+.+|+.+.|..||+..+....+
T Consensus 220 --------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 220 --------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred --------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 1123444444333334556666666564 45678887 774 78899999999999999877654432
Q ss_pred C-CcccHHHHHHHhCC
Q 005014 307 S-DDVDLERIAKDTHG 321 (719)
Q Consensus 307 ~-~~~~l~~la~~t~g 321 (719)
. .+.-+..++....+
T Consensus 290 ~l~~evl~~la~~~~~ 305 (445)
T PRK12422 290 RIEETALDFLIEALSS 305 (445)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 2 22336667776654
No 242
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.14 E-value=1.8e-09 Score=116.67 Aligned_cols=217 Identities=27% Similarity=0.344 Sum_probs=129.6
Q ss_pred ccchHHHHHHHHHHHHcccCChhh----HhhhCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh-hcc
Q 005014 122 VGGVRKQMAQIRELVELPLRHPQL----FKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLA 195 (719)
Q Consensus 122 i~G~~~~~~~l~~~~~~~l~~~~~----~~~l~~-~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~-~~~ 195 (719)
|.|.+++++.+...+...++.-.. ...-++ ....++||+||||||||++|+++|..++.+|..+++..+.. .|.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 799999999887665321111000 000011 12458999999999999999999999999999998877643 455
Q ss_pred cch-HHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccC-----------CCc
Q 005014 196 GES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKS-----------RAH 256 (719)
Q Consensus 196 g~~-~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~-----------~~~ 256 (719)
|.. +..+...++.+ ....+++|||||+|.+.+...... +-....+.+.|++.|++... ..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 653 34444444422 234678999999999987543221 10112355667777765321 124
Q ss_pred EEEEEecCCCC--------------------------C------------------------CCHHhhccCCCceEEEeC
Q 005014 257 VIVIGATNRPN--------------------------S------------------------IDPALRRFGRFDREIDIG 286 (719)
Q Consensus 257 vivI~atn~~~--------------------------~------------------------ld~al~r~~Rf~~~i~i~ 286 (719)
.++|.|+|-.. . +.|++ .+|++..+.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf--lgRld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF--IGRLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH--hCCCCeEeecC
Confidence 55666665410 0 11222 36899889999
Q ss_pred CCChHHHHHHHHHH----hc---------CCCCC-CcccHHHHHHH--hCCCccccHHHHHHHHHHHHHH
Q 005014 287 VPDEVGRLEVLRIH----TK---------NMKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIR 340 (719)
Q Consensus 287 ~P~~~~R~~il~~~----~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~ 340 (719)
+.+.+...+|+... .+ ++.+. .+.-+..+++. ...|-.+.+..++.......+.
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 99999998888642 11 11111 12235566665 3445566676666665554443
No 243
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=7.6e-10 Score=123.76 Aligned_cols=175 Identities=18% Similarity=0.254 Sum_probs=117.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|+++.|.+..++.|...+.. -..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 45667899999999999888877643 1223569999999999999999999987542
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.. ...-..++.+.+.+.. ....+++|||+|.+-. ...+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHH
Confidence 12222211 0112345555554432 2345999999998742 123567
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCC-CCcccHHHHHHHhCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 321 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g 321 (719)
+..++... ..+++|.+|+.+..+.+.+++ |+ ..+.+..|+..+....+...+..... .++..+..++..+.|
T Consensus 140 LKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 140 LKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHHhCC--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77777533 356666677788899999887 65 46899999999888888766543332 123346677777665
No 244
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.1e-09 Score=124.07 Aligned_cols=181 Identities=15% Similarity=0.234 Sum_probs=117.0
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE------E---
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF------F--- 183 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~------i--- 183 (719)
++.+-+|+++.|.+..++.|+.++..- ..+..+||+||+|+||||+|+++|+.+++.- .
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 345668999999999999888877641 2234589999999999999999999987521 0
Q ss_pred ----EEechhhhh----------hcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 005014 184 ----CINGPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 245 (719)
Q Consensus 184 ----~v~~~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~ 245 (719)
.-+|..+.. ......-..++.+.+.+.. ....|++|||+|.+... ..+.|+
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-----------a~NaLL 145 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-----------AFNAML 145 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------HHHHHH
Confidence 000111100 0000112345666655432 23469999999988522 235566
Q ss_pred HHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 246 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 246 ~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
..++.. ...+.+|.+|+++..+.+.+++ |+ ..+.+..++.++....|+..+....+. ++..+..+++.+.|
T Consensus 146 KtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G 217 (618)
T PRK14951 146 KTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG 217 (618)
T ss_pred HhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 666653 2355666677778888888877 66 678999999888888887665443332 23346777777765
No 245
>PRK09087 hypothetical protein; Validated
Probab=99.14 E-value=3.1e-10 Score=114.06 Aligned_cols=135 Identities=20% Similarity=0.255 Sum_probs=90.0
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCC
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD 508 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~ 508 (719)
.++|+||+|||||||+++++...+..++ +..++.. .++..... .++++||++.+.. .
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~-------~ 102 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGS-----------DAANAAAE---GPVLIEDIDAGGF-------D 102 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcch-----------HHHHhhhc---CeEEEECCCCCCC-------C
Confidence 4899999999999999999988765533 3322211 11111112 3888999997621 0
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC---CCcccCCCCCcc--eEEEeCCCCHHHHHHHHHHHhccCCCC
Q 005014 509 AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPVS 583 (719)
Q Consensus 509 ~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~ 583 (719)
. .+|...++.+...++.+||+++..|.. ..|.+.+ ||. .++.+.+|+.++|..|++..++..++.
T Consensus 103 -----~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 103 -----E---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred -----H---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 335555555555556677777766543 3678877 885 788999999999999999999876554
Q ss_pred C-ccCHHHHHHHcc
Q 005014 584 K-DVDLRALAKYTQ 596 (719)
Q Consensus 584 ~-~~d~~~la~~~~ 596 (719)
- +.-++.|++...
T Consensus 173 l~~ev~~~La~~~~ 186 (226)
T PRK09087 173 VDPHVVYYLVSRME 186 (226)
T ss_pred CCHHHHHHHHHHhh
Confidence 2 223556666655
No 246
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.2e-09 Score=116.75 Aligned_cols=190 Identities=17% Similarity=0.176 Sum_probs=121.7
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe----E--EEE----
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----F--ISV---- 458 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~----~--i~v---- 458 (719)
+..++++.|.+.+++.|...+.. -+.+..+||+||+|+|||++|+.+|+.+.+. + ...
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 45788899999999999877642 1344569999999999999999999987441 0 000
Q ss_pred -ec-----------cchh---hhc-c--C-----CchhhHHHHHHHH----HhCCCEEEEEeccchhhcccCCCCCCCCC
Q 005014 459 -KG-----------PELL---TMW-F--G-----ESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGG 511 (719)
Q Consensus 459 -~~-----------~~l~---~~~-~--g-----~se~~i~~~f~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~ 511 (719)
.+ +++. ..+ . | -+-..++.+-+.. ......|++|||+|.+-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 00 1111 000 0 0 0112344443332 23455799999999973
Q ss_pred chHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHH
Q 005014 512 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRAL 591 (719)
Q Consensus 512 ~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~l 591 (719)
....|.||..|+... .+.++|..|+.|+.+.|.+.+ |+ .++.|++|+.++...+++.......++ +..+..+
T Consensus 155 --~~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 155 --RNAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred --HHHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 335678999998643 345666667888888888877 88 599999999999999998743222211 2224556
Q ss_pred HHHccCCCHHHHHHHHHHHH
Q 005014 592 AKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 592 a~~~~~~sg~di~~~~~~A~ 611 (719)
++.+.| +++...+++....
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 666554 5555555555443
No 247
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.13 E-value=6.8e-10 Score=111.24 Aligned_cols=177 Identities=21% Similarity=0.283 Sum_probs=111.3
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe------EEEEe
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------FFCIN 186 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~------~i~v~ 186 (719)
+..+-+|+++.|.+..++.|...+.. ....++|+|||||||||+.|+++|+++..+ +...+
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 45566899999999999888777643 123479999999999999999999998762 23334
Q ss_pred chhhhhhcccchHHHHHHHHHHHHh---------cCC-cEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCc
Q 005014 187 GPEIMSKLAGESESNLRKAFEEAEK---------NAP-SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 256 (719)
Q Consensus 187 ~~~l~~~~~g~~~~~l~~vf~~a~~---------~~p-~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~ 256 (719)
.++-.+.... ..++. -|..... +.| -|++|||+|.+.. .....|...|+.... .
T Consensus 96 aSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~--~ 159 (346)
T KOG0989|consen 96 ASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSR--T 159 (346)
T ss_pred ccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhcccc--c
Confidence 4433332211 11111 1211111 122 6899999998853 244678888887544 4
Q ss_pred EEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 257 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 257 vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
+.+|..||.++.+...+.+ |. ..+.|+....+.-...|+..+....+. ++..+..+++.+.|
T Consensus 160 trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred eEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 5566678999888777766 54 334555555555555555554433332 23347777877765
No 248
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=7.3e-10 Score=124.82 Aligned_cols=186 Identities=17% Similarity=0.256 Sum_probs=120.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|+++.|.+..++.|...+... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 345568999999999999888877541 223458999999999999999999998652
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.. ...-..++.+++.+.. ....|++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naL 139 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAM 139 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHH
Confidence 11122110 1123456666665532 3346999999998742 234567
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCc
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 323 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 323 (719)
+..++.. ...+.+|.+|+++..+.+.+++ |+ ..+.+..++.++-...+...+....+. +...+..++..+.|-
T Consensus 140 LK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs- 213 (527)
T PRK14969 140 LKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS- 213 (527)
T ss_pred HHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 7777663 2356666677778888877776 55 667899998888777776655432222 223456677776653
Q ss_pred cccHHHHHHH
Q 005014 324 GADLAALCTE 333 (719)
Q Consensus 324 ~~dl~~l~~~ 333 (719)
.++...++..
T Consensus 214 lr~al~lldq 223 (527)
T PRK14969 214 MRDALSLLDQ 223 (527)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 249
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.13 E-value=3.3e-11 Score=112.02 Aligned_cols=109 Identities=28% Similarity=0.385 Sum_probs=72.7
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh------hhccC---CchhhHHHHHHHHHhCCCEEEEEeccchhh
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------TMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIA 499 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~------~~~~g---~se~~i~~~f~~a~~~~p~il~iDEid~l~ 499 (719)
+++|+||||||||++|+.+|+.++.+++.+.++... ..|.- ..+-.-..+.+..+ .++++||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 489999999999999999999999999988876532 22221 11100001111111 4589999999874
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHhcCCC-----------CCC------cEEEEEecCCCC----CCCcccCCCCCc
Q 005014 500 TQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK------TVFIIGATNRPD----IIDPALLRPGRL 555 (719)
Q Consensus 500 ~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~------~v~vi~atn~~~----~ld~allrpgRf 555 (719)
...+++.|+..++.-. ... ++.+|+|+|..+ .+++||++ ||
T Consensus 78 -------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 -------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 2457777777776521 011 389999999988 89999999 87
No 250
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.12 E-value=9.3e-11 Score=112.35 Aligned_cols=112 Identities=27% Similarity=0.389 Sum_probs=76.2
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHhCC----eEEEEeccchhhhccCCchhhHHHHHHHH----HhCCCEEEEEeccch
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDS 497 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~~~----~~i~v~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~il~iDEid~ 497 (719)
|...++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..+...+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3445999999999999999999999986 9999999988651 11122222222211 111112999999999
Q ss_pred hhcccCCCCCCCCCchHHHHHHHHHHhcCCC---------CCCcEEEEEecCCC
Q 005014 498 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP 542 (719)
Q Consensus 498 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~atn~~ 542 (719)
..+.. ....+-....+.+.||+.||+.. +.+++++|+|+|--
T Consensus 80 a~~~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 87751 12223345678899999998641 23579999999964
No 251
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.12 E-value=1.5e-09 Score=125.67 Aligned_cols=170 Identities=25% Similarity=0.418 Sum_probs=111.0
Q ss_pred cCCCCccccccchHHHHH---HHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechh
Q 005014 113 RLDEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 189 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~---~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~ 189 (719)
++.+-+++++.|.+..+. .+++++.. ....+++|+|||||||||+|+++++..+..++.+++..
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 345668899999988774 35554432 22347999999999999999999999998888888653
Q ss_pred hhhhcccchHHHHHHHHHHHH-----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecC
Q 005014 190 IMSKLAGESESNLRKAFEEAE-----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 264 (719)
Q Consensus 190 l~~~~~g~~~~~l~~vf~~a~-----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn 264 (719)
.. ...++.++..+. .....+|||||+|.+... ....|+..++ ...+++|++|+
T Consensus 88 ~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 88 AG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred hh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEecC
Confidence 11 112333333321 134569999999987421 1133444443 34677776654
Q ss_pred C-C-CCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC---------CCCCCcccHHHHHHHhCC
Q 005014 265 R-P-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN---------MKLSDDVDLERIAKDTHG 321 (719)
Q Consensus 265 ~-~-~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~---------~~l~~~~~l~~la~~t~g 321 (719)
. + ..+++++++ |. ..+.+++++.++...+++..+.. +.+ ++..+..++....|
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I-~deaL~~La~~s~G 209 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL-EPEAEKHLVDVANG 209 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC-CHHHHHHHHHhCCC
Confidence 3 2 467888887 53 45889999999999999876541 122 22336667766644
No 252
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.12 E-value=4.1e-10 Score=120.39 Aligned_cols=131 Identities=29% Similarity=0.436 Sum_probs=92.1
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh--hccCCchhhH------------HHHHHHHHhCCCEEEEE
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT--MWFGESEANV------------REIFDKARQSAPCVLFF 492 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~--~~~g~se~~i------------~~~f~~a~~~~p~il~i 492 (719)
.+++||.||||||||++|+.+|..++.+|+.|.+..-+. ..+|...-.. +.+|...+ +|+|+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~ 118 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLL 118 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEE
Confidence 456999999999999999999999999999998864332 1122211111 11222222 49999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcC----------CCCCCcEEEEEecCC-----CCCCCcccCCCCCcce
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG----------MSAKKTVFIIGATNR-----PDIIDPALLRPGRLDQ 557 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~----------~~~~~~v~vi~atn~-----~~~ld~allrpgRf~~ 557 (719)
|||+.. ...+.+.||..|+. +.-...++||+|+|. -..+.+|+++ ||-.
T Consensus 119 DEInra--------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~ 182 (329)
T COG0714 119 DEINRA--------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL 182 (329)
T ss_pred eccccC--------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE
Confidence 999874 25677888888876 222356888888893 4567889999 9999
Q ss_pred EEEeCCC-CHHHHHHHHHHHh
Q 005014 558 LIYIPLP-DEESRLQIFKACL 577 (719)
Q Consensus 558 ~i~~~~p-~~~~r~~Il~~~~ 577 (719)
.+++++| +.++...++....
T Consensus 183 ~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 183 RIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEecCCCCchHHHHHHHHhCc
Confidence 9999999 5555555555444
No 253
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=1.6e-09 Score=122.86 Aligned_cols=175 Identities=22% Similarity=0.340 Sum_probs=119.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|+++.|.+..++.|+..+... ..+..+||+||+|||||++|+.+|+.+++.
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 345678999999999999888887541 234568999999999999999999987542
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++. ....-..++.+...+. .....|++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 2222221 1122345666665543 23456999999998842 134567
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
+..++.. ...+++|.+|+.++.+.+.+++ |+ ..+.|..|+..+-...++..++...+. ++..+..++..+.|
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G 212 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG 212 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7777653 3355666667778899999887 66 467899999988888887766543332 23346677776665
No 254
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=2e-09 Score=122.79 Aligned_cols=181 Identities=22% Similarity=0.311 Sum_probs=120.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE---echh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI---NGPE 189 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v---~~~~ 189 (719)
+..+.+|++|.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.-... .|..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 346678999999999999998887541 1234689999999999999999999886531100 0100
Q ss_pred ----------hh--hhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC
Q 005014 190 ----------IM--SKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 253 (719)
Q Consensus 190 ----------l~--~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~ 253 (719)
+. ..........++.+.+.+.. ....|++|||+|.+.. ...+.|+..|+..
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEP-- 145 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEP-- 145 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcC--
Confidence 00 00000123446666665543 3456999999998742 1345677777753
Q ss_pred CCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 254 RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 254 ~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
...+++|.+|+.++.+.+.+++ |+ ..+.+..|+.++....|...+....+. .+..+..++..+.|
T Consensus 146 P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G 211 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG 211 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3456667777788899999887 66 578999999998888887655433332 22236667777665
No 255
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.11 E-value=9.1e-10 Score=116.39 Aligned_cols=161 Identities=24% Similarity=0.369 Sum_probs=105.3
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC-------CeEEE-Ee
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFIS-VK 459 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~-------~~~i~-v~ 459 (719)
+...|.+|.|++++|..|......| ...|+||.||+|||||++|++++..+. .+|.. -+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4567999999999999987665432 225799999999999999999987763 12210 00
Q ss_pred ccch-----hhh---------------c----cCCchhh------HHHHHHHHH---------hCCCEEEEEeccchhhc
Q 005014 460 GPEL-----LTM---------------W----FGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIAT 500 (719)
Q Consensus 460 ~~~l-----~~~---------------~----~g~se~~------i~~~f~~a~---------~~~p~il~iDEid~l~~ 500 (719)
.+++ ... + .|.++.. +...|.... ...-.+||+|||+.+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 0000 000 0 1112221 111221110 1123599999999873
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhcCC---------C--CCCcEEEEEecCCCC-CCCcccCCCCCcceEEEeCCCC-HH
Q 005014 501 QRGSSVGDAGGAADRVLNQLLTEMDGM---------S--AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPD-EE 567 (719)
Q Consensus 501 ~r~~~~~~~~~~~~~~~~~ll~~ld~~---------~--~~~~v~vi~atn~~~-~ld~allrpgRf~~~i~~~~p~-~~ 567 (719)
..+.+.|+..|+.. . ...++++|+|.|..+ .+.++++. ||..++.+..|+ .+
T Consensus 158 -------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 -------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred -------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 34566677777541 1 124688888888765 68899998 999999999997 69
Q ss_pred HHHHHHHHHh
Q 005014 568 SRLQIFKACL 577 (719)
Q Consensus 568 ~r~~Il~~~~ 577 (719)
.+.+|++...
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998864
No 256
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.11 E-value=3.6e-10 Score=104.37 Aligned_cols=126 Identities=34% Similarity=0.475 Sum_probs=83.2
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCe---EEEEeccchhhh--------------ccCCchhhHHHHHHHHHhCCCEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTM--------------WFGESEANVREIFDKARQSAPCVL 490 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~---~i~v~~~~l~~~--------------~~g~se~~i~~~f~~a~~~~p~il 490 (719)
..++|+||||||||++++.+|..+... ++.+++...... .........+.+++.++...+.++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 469999999999999999999998764 778877654321 123345667788999998888999
Q ss_pred EEeccchhhcccCCCCCCCCCchHHHHHHH--HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCC
Q 005014 491 FFDELDSIATQRGSSVGDAGGAADRVLNQL--LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 564 (719)
Q Consensus 491 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~l--l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p 564 (719)
|+||++.+..... ....... ...........+..+|+++|......+..+++ |++..+.++.+
T Consensus 83 iiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999999864321 0000000 00011112334568888888733344444443 89988888655
No 257
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=4.4e-10 Score=121.03 Aligned_cols=121 Identities=26% Similarity=0.497 Sum_probs=79.4
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCC-------eEEEEec----cchhhhc----cCCc--hhhHHHHHHHHHhC--CC
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG----PELLTMW----FGES--EANVREIFDKARQS--AP 487 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~-------~~i~v~~----~~l~~~~----~g~s--e~~i~~~f~~a~~~--~p 487 (719)
.++++|+||||||||++|+.+|..+.. .++.+.. .+++..+ +|-. ......+.+.|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 467999999999999999999988742 1233322 2333222 1110 11233455666653 47
Q ss_pred EEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcC--------------------CCCCCcEEEEEecCCCC----
Q 005014 488 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG--------------------MSAKKTVFIIGATNRPD---- 543 (719)
Q Consensus 488 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~--------------------~~~~~~v~vi~atn~~~---- 543 (719)
+++|||||+..- ..++..++++.|+. +.-..++.||||+|..+
T Consensus 274 ~vliIDEINRan-------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRAN-------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccC-------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 999999998742 23455555554441 23346899999999987
Q ss_pred CCCcccCCCCCcceEEEeCC
Q 005014 544 IIDPALLRPGRLDQLIYIPL 563 (719)
Q Consensus 544 ~ld~allrpgRf~~~i~~~~ 563 (719)
.+|.||+| ||. .|++.+
T Consensus 341 ~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hccHHHHh--hhh-eEEecC
Confidence 89999999 996 566654
No 258
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5.1e-10 Score=127.36 Aligned_cols=168 Identities=21% Similarity=0.331 Sum_probs=123.8
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEEe
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 459 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v~ 459 (719)
-..+.++|-++-.+.+.+.+. .+..+.-+|+|+||+|||.++..+|... +...++++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~-------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILS-------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHh-------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 356667777665555555443 2334557899999999999999999774 45677888
Q ss_pred ccchh--hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 460 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 460 ~~~l~--~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
...+. .+|-|+.|..++.+.+...+..+.|+|||||+.+.+..+..+ + ....-|-|.-.| ..+.+-+||
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~----a~DAaNiLKPaL----ARGeL~~IG 304 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G----AMDAANLLKPAL----ARGELRCIG 304 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c----ccchhhhhHHHH----hcCCeEEEE
Confidence 77776 589999999999999999988899999999999997643321 1 111222222222 345577889
Q ss_pred ecCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCC
Q 005014 538 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV 582 (719)
Q Consensus 538 atn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~ 582 (719)
||..-+ .-|+||-| ||. .|++..|+.++-..||+-.-.++..
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred eccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 887533 45899999 997 8999999999999999877655433
No 259
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.09 E-value=2.2e-09 Score=116.37 Aligned_cols=175 Identities=22% Similarity=0.341 Sum_probs=117.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
+..+.+|+++.|.+..++.|.+.+... ..+..+||+||||+|||++++++++.+.+.
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 345678999999999999998877531 234568999999999999999999987532
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.. ......++.+++.+.. ....+++|||+|.+.. ...+.|
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~L 137 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNAL 137 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHH
Confidence 22232211 1122346666666543 2335999999987742 123556
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
+..++... ..+++|.+++.++.+.+.+++ |+ ..+.+++|+..+...++...++...+. ++..+..++..+.|
T Consensus 138 l~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 138 LKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66665432 355666677778778888887 66 578999999999999888766544322 22345566666554
No 260
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.09 E-value=9.8e-10 Score=116.26 Aligned_cols=155 Identities=22% Similarity=0.311 Sum_probs=99.7
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC-------CeEE-------
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFI------- 456 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~-------~~~i------- 456 (719)
.|..|.|++++|..|.-....| ...+++|.|+||+||||+++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 3677899999998876443321 134699999999999999999998762 2111
Q ss_pred --EEec-------------------cchh-----hhccCCch--hhH--------HHHHHHHHhCCCEEEEEeccchhhc
Q 005014 457 --SVKG-------------------PELL-----TMWFGESE--ANV--------REIFDKARQSAPCVLFFDELDSIAT 500 (719)
Q Consensus 457 --~v~~-------------------~~l~-----~~~~g~se--~~i--------~~~f~~a~~~~p~il~iDEid~l~~ 500 (719)
..++ .++- +..+|... ..+ .-++..| ...++|+|||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCC-
Confidence 0000 0100 01122110 000 0111122 22599999999863
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCCC-CCCcccCCCCCcceEEEeCCCCH-H
Q 005014 501 QRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-E 567 (719)
Q Consensus 501 ~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~atn~~~-~ld~allrpgRf~~~i~~~~p~~-~ 567 (719)
..+.+.|+..|+.-. -..++++|+|+|..+ .+.++++. ||..++.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 356677777775321 124688888888655 68899998 9999999998865 8
Q ss_pred HHHHHHHHHh
Q 005014 568 SRLQIFKACL 577 (719)
Q Consensus 568 ~r~~Il~~~~ 577 (719)
+|.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 8999998854
No 261
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.2e-09 Score=110.54 Aligned_cols=100 Identities=28% Similarity=0.469 Sum_probs=76.5
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh-hhccCCc-hhhHHHHHHHHHh----CCCEEEEEeccchhhcc
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKARQ----SAPCVLFFDELDSIATQ 501 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-~~~~g~s-e~~i~~~f~~a~~----~~p~il~iDEid~l~~~ 501 (719)
..+||.||+|+|||.||+.||+.++.||...+|..|. ..|+|+. |.-|..+++.|.. ....|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4599999999999999999999999999999998886 4699987 4456677766532 23469999999999854
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhcCC
Q 005014 502 RGSSVGDAGGAADRVLNQLLTEMDGM 527 (719)
Q Consensus 502 r~~~~~~~~~~~~~~~~~ll~~ld~~ 527 (719)
-.+-....+-...-|...||..++|-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 33222222334566889999999883
No 262
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=3.4e-09 Score=117.96 Aligned_cols=181 Identities=21% Similarity=0.304 Sum_probs=114.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE--------EE
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------FC 184 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~--------i~ 184 (719)
+..+-+|+++.|.+..++.|+..+... ..+..+||+||+|+||||+|+.+|..+++.- ..
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 345668999999999999888887541 1234589999999999999999999886410 00
Q ss_pred Eechhhhh----------hcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 005014 185 INGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 250 (719)
Q Consensus 185 v~~~~l~~----------~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~ 250 (719)
.+|..+.. ......-..++.+.+.+. .....|++|||+|.+.. ...+.|+..++.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LEe 145 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLEE 145 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHhc
Confidence 11111110 000011233455444432 23456999999997742 123556666665
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 251 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 251 ~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
.. ..+++|.+|+.++.+.+++++ |+ ..+.+.+|+..+....+...++...+. ++..+..++..+.|
T Consensus 146 pp--~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 146 PP--PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred CC--CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 32 344555556667788888876 55 468999999999998888776554433 22335666666554
No 263
>PRK05642 DNA replication initiation factor; Validated
Probab=99.08 E-value=3.3e-09 Score=107.54 Aligned_cols=147 Identities=18% Similarity=0.292 Sum_probs=98.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 231 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~ 231 (719)
.+++|+||+|||||+|++++++++ +..+++++..++.... ..+.+.... ..+|+|||++.+..+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 579999999999999999998764 5667788877765421 122222222 25899999998754321
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC---CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC--CCC
Q 005014 232 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKL 306 (719)
Q Consensus 232 ~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l---d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~--~~l 306 (719)
....|.++++.+...+..++++++..|..+ .+.+++.......+.+..|+.+++..+++..... +.+
T Consensus 115 --------~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l 186 (234)
T PRK05642 115 --------WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHL 186 (234)
T ss_pred --------HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 224566777666666677788777766533 5788872223467788999999999999855433 333
Q ss_pred CCcccHHHHHHHhCC
Q 005014 307 SDDVDLERIAKDTHG 321 (719)
Q Consensus 307 ~~~~~l~~la~~t~g 321 (719)
. +.-+..++....+
T Consensus 187 ~-~ev~~~L~~~~~~ 200 (234)
T PRK05642 187 T-DEVGHFILTRGTR 200 (234)
T ss_pred C-HHHHHHHHHhcCC
Confidence 3 3336666666654
No 264
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=6.9e-09 Score=111.44 Aligned_cols=185 Identities=19% Similarity=0.174 Sum_probs=120.8
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeE-------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 455 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~------------- 455 (719)
...+++|.|.+.+++.|.+.+.. -+.+..+||+||+|+||+++|.++|+.+-+.-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45788999999999999877653 23456799999999999999999998762210
Q ss_pred EEE-------------eccchhhhcc---CC--------chhhHHHHHHHH----HhCCCEEEEEeccchhhcccCCCCC
Q 005014 456 ISV-------------KGPELLTMWF---GE--------SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVG 507 (719)
Q Consensus 456 i~v-------------~~~~l~~~~~---g~--------se~~i~~~f~~a----~~~~p~il~iDEid~l~~~r~~~~~ 507 (719)
+.+ +-+++.--.. +. .-..||.+-+.+ ....+.|++|||+|.+-
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 000 0011110000 10 123355555443 33567899999999862
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccC
Q 005014 508 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD 587 (719)
Q Consensus 508 ~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d 587 (719)
....|.||..++.. ..+.++|.+|+.++.+.|.+.+ |+. .+.|++|+.++...++...... ..+..
T Consensus 155 ------~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 155 ------ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred ------HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 35678899998854 3456777889999989888876 885 8999999999998888775421 11112
Q ss_pred HHHHHHHccCCCHHHHHHHHH
Q 005014 588 LRALAKYTQGFSGADITEICQ 608 (719)
Q Consensus 588 ~~~la~~~~~~sg~di~~~~~ 608 (719)
+..++..+.| +.....+++.
T Consensus 221 ~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 221 RAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHHcCC-CHHHHHHHhc
Confidence 2456666654 4444344443
No 265
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=2.9e-09 Score=115.88 Aligned_cols=179 Identities=22% Similarity=0.257 Sum_probs=114.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEech----
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP---- 188 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~---- 188 (719)
+..+.+|+++.|.+..++.+...+... ..+.++|||||||+|||++++++++.+.+......+.
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 456778999999999999888887541 2345799999999999999999999876521111000
Q ss_pred ---hhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEE
Q 005014 189 ---EIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 261 (719)
Q Consensus 189 ---~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~ 261 (719)
++ ..........++.+++.+.. ..+.++++||++.+.. ...+.|+..++.. ....++|.
T Consensus 78 ~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~--~~~~~~Il 143 (367)
T PRK14970 78 NIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP--PAHAIFIL 143 (367)
T ss_pred ceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC--CCceEEEE
Confidence 00 00011123456666665432 3456999999987742 1234555556542 22345555
Q ss_pred ecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCC-CCcccHHHHHHHhC
Q 005014 262 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTH 320 (719)
Q Consensus 262 atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~ 320 (719)
+++.+..+.+++++ |+ ..+.+..|+.++...++...+....+ .++..+..++..+.
T Consensus 144 ~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~ 200 (367)
T PRK14970 144 ATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD 200 (367)
T ss_pred EeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 66677888888887 55 45889999999888888765544333 12334666666554
No 266
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=1.9e-09 Score=114.54 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=114.3
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC--------eEEEEeccc
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISVKGPE 462 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--------~~i~v~~~~ 462 (719)
+|+++.|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|..+.+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 588999999999999877632 233456899999999999999999997632 222232210
Q ss_pred hhhhccCCchhhHHHHHHHH----HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEe
Q 005014 463 LLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 538 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~a 538 (719)
++. -+-..++.+.+.+ ......|++||++|.+. ....|.||..|+.- ..++++|.+
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEep--p~~t~~il~ 129 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEEP--PKGVFIILL 129 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcCC--CCCeEEEEE
Confidence 010 1123466655533 23345799999998862 34568899999863 345566666
Q ss_pred cCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccC
Q 005014 539 TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 597 (719)
Q Consensus 539 tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~ 597 (719)
|+.++.+-|.+.+ |+. +++|++|+.++....++..+.. + ....+..++..+.|
T Consensus 130 ~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 130 CENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred eCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 6778999999987 884 9999999999888777665432 1 12234455655554
No 267
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.06 E-value=1.9e-09 Score=123.23 Aligned_cols=84 Identities=26% Similarity=0.412 Sum_probs=57.8
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe----EEEEec
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISVKG 460 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~----~i~v~~ 460 (719)
+.+|..-|+++.|.+++++.+...+.. .++++|+||||||||++++++++.+... ++.+.-
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n 74 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN 74 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC
Confidence 456777899999999999888766542 2379999999999999999999998644 233332
Q ss_pred c------chhhhccCCchhhHHHHHHHHH
Q 005014 461 P------ELLTMWFGESEANVREIFDKAR 483 (719)
Q Consensus 461 ~------~l~~~~~g~se~~i~~~f~~a~ 483 (719)
+ -+...+.|..++.++..|..|+
T Consensus 75 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 103 (608)
T TIGR00764 75 PEDPNMPRIVEVPAGEGREIVEDYKKKAF 103 (608)
T ss_pred CCCCchHHHHHHHHhhchHHHHHHHHHhh
Confidence 2 2223445555665555554433
No 268
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=4.6e-09 Score=118.73 Aligned_cols=175 Identities=19% Similarity=0.288 Sum_probs=117.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
+..+-+|++|.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 355678999999999999988887531 123469999999999999999999998642
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.. ...-..++.+.+.+ ......+++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHH
Confidence 12222110 01123444444332 234557999999998742 234566
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
+..++.. ...+++|.+|+.+..+.+++++ |+ ..+.+..++.++....++..+....+. +...+..++..+.|
T Consensus 140 LK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G 212 (563)
T PRK06647 140 LKTIEEP--PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG 212 (563)
T ss_pred HHhhccC--CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6666642 3456666777778888888887 66 457899999998888887665433322 23346677777665
No 269
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=3.2e-09 Score=121.12 Aligned_cols=175 Identities=21% Similarity=0.318 Sum_probs=117.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|++|.|.+..++.|...+... ..+..+||+||+|+|||++++++|+.+++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 455678999999999999988877541 224468999999999999999999998642
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++.. ...-..++.+.+.+.. ....|++|||+|.+.. ...+.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHH
Confidence 22232211 1112345565554432 2346999999998752 124667
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
+..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|..++..+-...+...++...+. ++..+..++..+.|
T Consensus 140 Lk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 140 LKTLEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 7777753 3366677777888899988887 55 467888888887777776554433322 23346777777775
No 270
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.05 E-value=4.4e-10 Score=116.80 Aligned_cols=136 Identities=14% Similarity=0.183 Sum_probs=94.0
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh--cccchHHH----------HHHHHHHHHhcCCcEEEEc
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK--LAGESESN----------LRKAFEEAEKNAPSIIFID 220 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~--~~g~~~~~----------l~~vf~~a~~~~p~iL~iD 220 (719)
.+++|||.||||||||++++.+|..++.+++.+++...... ..|...-. ....+-.|. ..++++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 45689999999999999999999999999999987654332 23321100 011122232 346789999
Q ss_pred cccccCCCCCCCchHHHHHHHHHHHHHhhc------------ccCCCcEEEEEecCCCC------------CCCHHhhcc
Q 005014 221 EIDSIAPKREKTHGEVERRIVSQLLTLMDG------------LKSRAHVIVIGATNRPN------------SIDPALRRF 276 (719)
Q Consensus 221 Eid~l~~~~~~~~~~~~~~v~~~L~~~l~~------------~~~~~~vivI~atn~~~------------~ld~al~r~ 276 (719)
|++..-++ +...|..+++. +...+.+.||+|+|+.. .++++++.
T Consensus 142 Ein~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99977432 22334444431 22345688999999854 34788887
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHhc
Q 005014 277 GRFDREIDIGVPDEVGRLEVLRIHTK 302 (719)
Q Consensus 277 ~Rf~~~i~i~~P~~~~R~~il~~~~~ 302 (719)
||...+.+..|+.+.-.+|+.....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999876543
No 271
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=7.3e-09 Score=114.64 Aligned_cols=175 Identities=20% Similarity=0.292 Sum_probs=115.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+.+|++|.|.+..++.|...+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 455678999999999999888877541 224569999999999999999999987542
Q ss_pred --------------EEEEechhhhhhcccchHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCchHHHHHHHHH
Q 005014 182 --------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 243 (719)
Q Consensus 182 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~ 243 (719)
++.+++... . .-..++.+.+.. ......+++|||+|.+.. ...+.
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~ 140 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNS 140 (451)
T ss_pred cHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHH
Confidence 222222110 0 012333332222 224567999999998742 12456
Q ss_pred HHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 244 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 244 L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
|+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..++.++....+...++..... +...+..++..+.|
T Consensus 141 LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 141 LLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHhhcCC--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 777777633 355666677777888888887 66 468999999988888777655433321 23346666666654
No 272
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.3e-08 Score=109.03 Aligned_cols=163 Identities=23% Similarity=0.386 Sum_probs=112.2
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----EEEEechhhhhh-
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----FFCINGPEIMSK- 193 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~-----~i~v~~~~l~~~- 193 (719)
+.+.+-+++++++...+.-.++. ..|.+++|+|+||||||++++.+++++... +++|||....+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 34788899999998886654433 345569999999999999999999987543 799999654221
Q ss_pred ---------c-----ccc-hHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcE
Q 005014 194 ---------L-----AGE-SESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV 257 (719)
Q Consensus 194 ---------~-----~g~-~~~~l~~vf~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~v 257 (719)
. .|. ..+....+++.... ....|+++||+|.|....+ .++-.|....... ..++
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v 157 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKV 157 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeE
Confidence 1 111 12223333333333 4457889999999987653 3444555544443 5678
Q ss_pred EEEEecCCCC---CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhc
Q 005014 258 IVIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 302 (719)
Q Consensus 258 ivI~atn~~~---~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~ 302 (719)
.+|+.+|..+ .+++.+.+.-.. .+|.|++.+.++-..|+....+
T Consensus 158 ~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 158 SIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred EEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHH
Confidence 8999988763 668888773233 4489999999999999987654
No 273
>PHA02244 ATPase-like protein
Probab=99.04 E-value=1.2e-08 Score=107.11 Aligned_cols=122 Identities=26% Similarity=0.351 Sum_probs=78.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhccc---ch-HHHHHHHHHHHHhcCCcEEEEccccccCCC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG---ES-ESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g---~~-~~~l~~vf~~a~~~~p~iL~iDEid~l~~~ 228 (719)
.+.+|||+||||||||++|+++|..++.+++.+++..-.....| .. ...-..++... ....+|+|||++.+.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE 195 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH
Confidence 45679999999999999999999999999998885311111111 00 00011222222 34579999999977532
Q ss_pred CCCCchHHHHHHHHHHHHHhh---------cccCCCcEEEEEecCCC-----------CCCCHHhhccCCCceEEEeCCC
Q 005014 229 REKTHGEVERRIVSQLLTLMD---------GLKSRAHVIVIGATNRP-----------NSIDPALRRFGRFDREIDIGVP 288 (719)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~~l~---------~~~~~~~vivI~atn~~-----------~~ld~al~r~~Rf~~~i~i~~P 288 (719)
+...|..+++ ......++.+|+|+|.+ ..++++++. ||. .+++..|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 2233334443 12234578899999973 466888887 894 6899998
Q ss_pred Ch
Q 005014 289 DE 290 (719)
Q Consensus 289 ~~ 290 (719)
..
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 74
No 274
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.04 E-value=2.9e-09 Score=117.74 Aligned_cols=169 Identities=15% Similarity=0.221 Sum_probs=106.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHH--hcCCcEEEEccccccCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAE--KNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~--~~~p~iL~iDEid~l~~ 227 (719)
.+++|+|++|+|||+|++++++.+ +..++++++.++...+........ ..++... ...+.+|+|||++.+..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHHhccCCEEEEeccccccC
Confidence 469999999999999999999864 467788888887665443222110 1112111 13467999999998854
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCC---CCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCC
Q 005014 228 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM 304 (719)
Q Consensus 228 ~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~---ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~ 304 (719)
+. .....|..+++.+......+|+++...|.. +++.+++.......+.+.+|+.++|.+|++..+...
T Consensus 221 k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 221 KE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred CH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 32 123445555555544444455555555543 467787732334667899999999999998877543
Q ss_pred CC---CCcccHHHHHHHhCCCccccHHHHHHHH
Q 005014 305 KL---SDDVDLERIAKDTHGYVGADLAALCTEA 334 (719)
Q Consensus 305 ~l---~~~~~l~~la~~t~g~~~~dl~~l~~~a 334 (719)
.+ ..+.-+..++..+.|- .+.+..++...
T Consensus 292 gl~~~l~~evl~~Ia~~~~gd-~R~L~gaL~~l 323 (450)
T PRK14087 292 NIKQEVTEEAINFISNYYSDD-VRKIKGSVSRL 323 (450)
T ss_pred CCCCCCCHHHHHHHHHccCCC-HHHHHHHHHHH
Confidence 21 2333467777777653 33344444443
No 275
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.03 E-value=1.5e-08 Score=118.54 Aligned_cols=131 Identities=26% Similarity=0.339 Sum_probs=86.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhh------hhhcc----cchHHHHHHHHHHHHhcCCcEEEEccc
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI------MSKLA----GESESNLRKAFEEAEKNAPSIIFIDEI 222 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l------~~~~~----g~~~~~l~~vf~~a~~~~p~iL~iDEi 222 (719)
....+||.||..||||+.+..+|.+.|..|+.++..+- ++.|+ |..+-+-+ ++-.|.+.. -.+++||+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEG-vLVeAlR~G-yWIVLDEL 964 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEG-VLVEALRRG-YWIVLDEL 964 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehh-HHHHHHhcC-cEEEeecc
Confidence 34579999999999999999999999999999987543 23332 21121222 333333332 37899998
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHhhccc------------CCCcEEEEEecCCCC------CCCHHhhccCCCceEEE
Q 005014 223 DSIAPKREKTHGEVERRIVSQLLTLMDGLK------------SRAHVIVIGATNRPN------SIDPALRRFGRFDREID 284 (719)
Q Consensus 223 d~l~~~~~~~~~~~~~~v~~~L~~~l~~~~------------~~~~vivI~atn~~~------~ld~al~r~~Rf~~~i~ 284 (719)
...+ ..++..|..++|..+ ..+.+.+.||.|+|- .+..|+|. || .++.
T Consensus 965 NLAp-----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~h 1030 (4600)
T COG5271 965 NLAP-----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMH 1030 (4600)
T ss_pred ccCc-----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhh
Confidence 7543 236677777777432 345677888989884 45677776 78 3445
Q ss_pred eCCCChHHHHHHHHH
Q 005014 285 IGVPDEVGRLEVLRI 299 (719)
Q Consensus 285 i~~P~~~~R~~il~~ 299 (719)
|..-.+.+...||..
T Consensus 1031 FddipedEle~ILh~ 1045 (4600)
T COG5271 1031 FDDIPEDELEEILHG 1045 (4600)
T ss_pred cccCcHHHHHHHHhc
Confidence 554555666666653
No 276
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.03 E-value=2.3e-09 Score=123.80 Aligned_cols=155 Identities=25% Similarity=0.358 Sum_probs=103.6
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-------------------
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------------------- 451 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~------------------- 451 (719)
.|.+|.|++.++..|.-....+ ...|+||.|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 3678999999998776443321 12469999999999999999999887
Q ss_pred ----------------CCeEEEEeccchhhhccCCc--hhhHH--------HHHHHHHhCCCEEEEEeccchhhcccCCC
Q 005014 452 ----------------QANFISVKGPELLTMWFGES--EANVR--------EIFDKARQSAPCVLFFDELDSIATQRGSS 505 (719)
Q Consensus 452 ----------------~~~~i~v~~~~l~~~~~g~s--e~~i~--------~~f~~a~~~~p~il~iDEid~l~~~r~~~ 505 (719)
..+|+.+...-.....+|.. ++.++ .++..| .-.|+|+|||+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------ 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------ 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC------
Confidence 24555554433223333321 11110 011111 22499999999873
Q ss_pred CCCCCCchHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCC-CCCCcccCCCCCcceEEEeCCC-CHHHHHHH
Q 005014 506 VGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLP-DEESRLQI 572 (719)
Q Consensus 506 ~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~atn~~-~~ld~allrpgRf~~~i~~~~p-~~~~r~~I 572 (719)
..+.+.||..|+.-. ...++++|+|+|.. ..+.++|+. ||+.+|.++.+ +.+++.+|
T Consensus 140 --------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 140 --------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred --------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 456788888886321 12458999999964 357889998 99999999877 46888888
Q ss_pred HHHHh
Q 005014 573 FKACL 577 (719)
Q Consensus 573 l~~~~ 577 (719)
++..+
T Consensus 210 l~~~~ 214 (633)
T TIGR02442 210 IRRRL 214 (633)
T ss_pred HHHHH
Confidence 87654
No 277
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.03 E-value=9.8e-09 Score=106.74 Aligned_cols=188 Identities=20% Similarity=0.313 Sum_probs=112.7
Q ss_pred eeeecCCCCchhHHHHHHHHHhCC-eEE--EEec-----cchh---hhccCCch------hhHHHHH----HHHHhCCCE
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQA-NFI--SVKG-----PELL---TMWFGESE------ANVREIF----DKARQSAPC 488 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~-~~i--~v~~-----~~l~---~~~~g~se------~~i~~~f----~~a~~~~p~ 488 (719)
++|+||+|+||||+++.++..+.. .+. .+.. .++. ....|... ...+.+. .......+.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 125 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRA 125 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCe
Confidence 889999999999999999998752 222 1111 1111 01112211 1112222 223355678
Q ss_pred EEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-CCCcEEEEEecCCCC---CCC-c---ccCCCCCcceEEE
Q 005014 489 VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNRPD---IID-P---ALLRPGRLDQLIY 560 (719)
Q Consensus 489 il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~atn~~~---~ld-~---allrpgRf~~~i~ 560 (719)
++++||++.+.. ..++.+ ..+-... .....+.|..+..|+ .+. + .+.+ |+...++
T Consensus 126 vliiDe~~~l~~--------------~~~~~l-~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 126 LLVVDEAQNLTP--------------ELLEEL-RMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred EEEEECcccCCH--------------HHHHHH-HHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 999999998632 112222 2222211 122222222223332 222 2 2444 7888899
Q ss_pred eCCCCHHHHHHHHHHHhccCCCC-----CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 005014 561 IPLPDEESRLQIFKACLRKSPVS-----KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEA 635 (719)
Q Consensus 561 ~~~p~~~~r~~Il~~~~~~~~~~-----~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~ 635 (719)
+++.+.++...++...++..+.. .+..++.+++.+.|.. +.|..+|..|...|..+.
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~----------------- 250 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE----------------- 250 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC-----------------
Confidence 99999999999999888654321 2334677788888875 559999999988877653
Q ss_pred cccccccccccccHHHHHHHHhhcC
Q 005014 636 MEEDVEDEVAEIKAVHFEESMKYAR 660 (719)
Q Consensus 636 ~~~~~~~~~~~v~~~~~~~a~~~~~ 660 (719)
...|+.++++.++..+.
T Consensus 251 --------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 --------KREIGGEEVREVIAEID 267 (269)
T ss_pred --------CCCCCHHHHHHHHHHhh
Confidence 23699999999987654
No 278
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.03 E-value=3e-09 Score=118.74 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|+|++|+|||||.+.|++..
T Consensus 24 l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 24 LTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred ceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456788999999999999999999999876
No 279
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.02 E-value=2.5e-09 Score=111.00 Aligned_cols=66 Identities=35% Similarity=0.545 Sum_probs=46.0
Q ss_pred cccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC--CeEEEEeccchhh
Q 005014 392 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 465 (719)
Q Consensus 392 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~--~~~i~v~~~~l~~ 465 (719)
.+.+.|+.+.++..--.+.. . +-+.-..+++||.||||||||.||-++|++++ .||+.++++++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------I-k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------I-KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------H-HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccccChHHHHHHHHHHHHH-------H-hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 45678998888876544321 1 11334567899999999999999999999996 7999999998864
No 280
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.02 E-value=1.7e-08 Score=116.00 Aligned_cols=164 Identities=27% Similarity=0.461 Sum_probs=103.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEE
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFF 183 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i 183 (719)
+.+-+|+++.|.+..++.+...+.. ..+.+++|+|||||||||+|+++.+.. +.+|+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 4456889999999988887665532 124579999999999999999998765 34688
Q ss_pred EEechhhhh-------hcccchHH----HHHHHHHH----------HHhcCCcEEEEccccccCCCCCCCchHHHHHHHH
Q 005014 184 CINGPEIMS-------KLAGESES----NLRKAFEE----------AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 242 (719)
Q Consensus 184 ~v~~~~l~~-------~~~g~~~~----~l~~vf~~----------a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~ 242 (719)
.++|..+.. .+.+.... ..+..+.. .......+|||||++.+-.. ...
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q~ 283 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQN 283 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HHH
Confidence 898865420 11111100 00111110 01123469999999877422 122
Q ss_pred HHHHHhhcc--------------------------cCCCcEEEEE-ecCCCCCCCHHhhccCCCceEEEeCCCChHHHHH
Q 005014 243 QLLTLMDGL--------------------------KSRAHVIVIG-ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 295 (719)
Q Consensus 243 ~L~~~l~~~--------------------------~~~~~vivI~-atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 295 (719)
.|+..++.- .....+++++ +++.++.+++++++ ||. .+.+++++.++...
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 333333221 0122455555 55678889999987 774 67899999999999
Q ss_pred HHHHHhcCC
Q 005014 296 VLRIHTKNM 304 (719)
Q Consensus 296 il~~~~~~~ 304 (719)
|++..+...
T Consensus 361 Il~~~a~~~ 369 (615)
T TIGR02903 361 IVLNAAEKI 369 (615)
T ss_pred HHHHHHHHc
Confidence 999876654
No 281
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.02 E-value=7.4e-09 Score=110.51 Aligned_cols=174 Identities=23% Similarity=0.287 Sum_probs=110.3
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC-----eEEEEec
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCING 187 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~-----~~i~v~~ 187 (719)
+..+.+|+++.|.+++++.++..+... ...+++|+||||||||++++++++.+.. .++.+++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 345568899999999999988877531 1236999999999999999999998732 3344443
Q ss_pred hhhhhhcccchHHHHHHHHHHHHh------cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEE
Q 005014 188 PEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 261 (719)
Q Consensus 188 ~~l~~~~~g~~~~~l~~vf~~a~~------~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~ 261 (719)
++-.+ ...++..+..... ..+.+++|||++.+... ....|...++..... ..+|.
T Consensus 77 ~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~--~~lIl 137 (319)
T PRK00440 77 SDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQN--TRFIL 137 (319)
T ss_pred ccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCC--CeEEE
Confidence 32111 1112222222111 23459999999887421 124566666654443 33444
Q ss_pred ecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 262 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 262 atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
+++.+..+.+.+++ |+. .+.+++++.++...+++..++...+. ....+..++..+.|
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 56666677677776 553 58999999999888888776544332 33346777776554
No 282
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.1e-08 Score=116.87 Aligned_cols=182 Identities=18% Similarity=0.252 Sum_probs=117.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE-------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI------- 185 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v------- 185 (719)
++..-+|+++.|.+..++.|...+... .-..++||+||+|+|||++|+++|+.+.+.....
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 345668999999999999988887641 1234799999999999999999999987631100
Q ss_pred ech-----------hh--hhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHh
Q 005014 186 NGP-----------EI--MSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 248 (719)
Q Consensus 186 ~~~-----------~l--~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l 248 (719)
.|. ++ ........-..++.+++.+.. ....|+||||+|.|.. ...+.|+..+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK~L 145 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLKTL 145 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHHHH
Confidence 010 00 001111233567777766542 2346999999998742 2345677777
Q ss_pred hcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCC
Q 005014 249 DGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 322 (719)
Q Consensus 249 ~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 322 (719)
+.. ...+++|.+|+++..+-+.+++ |+ ..+.|..++.++-...+.......... ....+..++..+.|-
T Consensus 146 EeP--p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 146 EEP--PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred hcC--CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 753 2356666677778888888887 65 567888888777666665444332221 223366677776653
No 283
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=1.1e-08 Score=116.10 Aligned_cols=191 Identities=19% Similarity=0.191 Sum_probs=123.3
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCIN------ 186 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~------ 186 (719)
++.+-+|+++.|.+..++.|...+..- ..+..+||+||+|+||||+|+++|+.+++.....+
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 455668999999999999998877531 23457999999999999999999999875422111
Q ss_pred -------chhhhhh----------cccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 005014 187 -------GPEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 245 (719)
Q Consensus 187 -------~~~l~~~----------~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~ 245 (719)
|..+... .....-..++.+++.+.. ....|+||||+|.+.. ...+.|+
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLL 153 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALL 153 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHH
Confidence 1111100 000113456666665542 3356999999998842 1245677
Q ss_pred HHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCcc
Q 005014 246 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 324 (719)
Q Consensus 246 ~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 324 (719)
..|+.... .+.+|.+|+.++.+.+.+++ |+ ..+.+..|+.++....++..++..... ....+..++..+.|. .
T Consensus 154 KtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd-l 227 (598)
T PRK09111 154 KTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS-V 227 (598)
T ss_pred HHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 77765433 45555566777778888876 66 578999999998888887665543332 223466677777653 3
Q ss_pred ccHHHHHH
Q 005014 325 ADLAALCT 332 (719)
Q Consensus 325 ~dl~~l~~ 332 (719)
+++..++.
T Consensus 228 r~al~~Ld 235 (598)
T PRK09111 228 RDGLSLLD 235 (598)
T ss_pred HHHHHHHH
Confidence 33333333
No 284
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.4e-08 Score=113.09 Aligned_cols=186 Identities=18% Similarity=0.215 Sum_probs=120.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|+++.|.+..++.|...+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 456678999999999999888887531 223457999999999999999999987421
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 182 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 182 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
++.+++..- ..-..++.+.+.... ....|++|||+|.+.. ...+.|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NAL 137 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNAL 137 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 222222110 012345555544221 2335999999988742 234567
Q ss_pred HHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCc
Q 005014 245 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 323 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 323 (719)
+..++... ..+.+|.+|+.+..+.+++++ |. ..+.+..++.++-...+...+...... ....+..++..+.| .
T Consensus 138 LK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 77777653 345555566777899999988 64 678999999888877777655433222 23346677777665 3
Q ss_pred cccHHHHHHH
Q 005014 324 GADLAALCTE 333 (719)
Q Consensus 324 ~~dl~~l~~~ 333 (719)
.+++..++..
T Consensus 212 lR~alnlLdq 221 (535)
T PRK08451 212 LRDTLTLLDQ 221 (535)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 285
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.99 E-value=7.2e-09 Score=114.45 Aligned_cols=164 Identities=27% Similarity=0.386 Sum_probs=106.5
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHH----HhcCCcEEEEccccccCC
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~iL~iDEid~l~~ 227 (719)
++.+-+||+||||-||||||+.+|+..|..++.||+++-.+. .....++..+.+.- ..+.|.+|++||||--.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 345569999999999999999999999999999999874321 12233333333321 12679999999998432
Q ss_pred CCCCCchHHHHHHHHHHHHHhh-------cccC---------CC---cEEEEEecCCCCCCCHHhhccCCCceEEEeCCC
Q 005014 228 KREKTHGEVERRIVSQLLTLMD-------GLKS---------RA---HVIVIGATNRPNSIDPALRRFGRFDREIDIGVP 288 (719)
Q Consensus 228 ~~~~~~~~~~~~v~~~L~~~l~-------~~~~---------~~---~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P 288 (719)
...+..++.++. +-.. +. .--||+.||+. .-|+||...-|...|.|.+|
T Consensus 401 ----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p 468 (877)
T KOG1969|consen 401 ----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPP 468 (877)
T ss_pred ----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCC
Confidence 233445555443 1000 00 12367788854 57899887789999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCc-ccHHHHHHHhCCCccccHHHHHHHH
Q 005014 289 DEVGRLEVLRIHTKNMKLSDD-VDLERIAKDTHGYVGADLAALCTEA 334 (719)
Q Consensus 289 ~~~~R~~il~~~~~~~~l~~~-~~l~~la~~t~g~~~~dl~~l~~~a 334 (719)
......+-|+..+.+..+..+ ..+..+++.++ .|+...+...
T Consensus 469 ~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtL 511 (877)
T KOG1969|consen 469 SQSRLVERLNEICHRENMRADSKALNALCELTQ----NDIRSCINTL 511 (877)
T ss_pred ChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHH
Confidence 988888878777655443322 23555555555 4555544443
No 286
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=2.7e-09 Score=112.39 Aligned_cols=183 Identities=19% Similarity=0.263 Sum_probs=123.0
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe----------EEEEec
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG 460 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~----------~i~v~~ 460 (719)
.|+++.|++.+++.|...+.. -+.+..+||+||+|+||+++|.++|..+-+. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 488999999999999887653 1335679999999999999999999885221 111122
Q ss_pred cchhhh---c--cCC--------------------chhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCC
Q 005014 461 PELLTM---W--FGE--------------------SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGG 511 (719)
Q Consensus 461 ~~l~~~---~--~g~--------------------se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~ 511 (719)
+|+.-- | -|. .-..++.+.+.+. .....|++||++|.+.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 222200 0 011 0124566655543 2446799999999873
Q ss_pred chHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHH
Q 005014 512 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRAL 591 (719)
Q Consensus 512 ~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~l 591 (719)
....|.||+.|+.-. +.++|..|+.++.|-|.+++ |+ .+++|++|+.++...+++........ +.+...+
T Consensus 138 --~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 138 --EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred --HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 345688999998764 23566677788999999988 88 49999999999999999876532211 1234677
Q ss_pred HHHccCCCHHHHHHHHH
Q 005014 592 AKYTQGFSGADITEICQ 608 (719)
Q Consensus 592 a~~~~~~sg~di~~~~~ 608 (719)
+..+.| +++...++++
T Consensus 208 ~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 208 LALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHcCC-CHHHHHHHHH
Confidence 777765 4444444443
No 287
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.4e-08 Score=115.51 Aligned_cols=181 Identities=18% Similarity=0.245 Sum_probs=114.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEE--------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-------- 184 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~-------- 184 (719)
++.+-+|++|.|.+..++.|+..+... .-+..+||+||+||||||+|+++|+.+.+.--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 456678999999999999888876531 223469999999999999999999998762100
Q ss_pred --Ee---c---hhhhh-------hccc---chHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCchHHHHHHHH
Q 005014 185 --IN---G---PEIMS-------KLAG---ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 242 (719)
Q Consensus 185 --v~---~---~~l~~-------~~~g---~~~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~ 242 (719)
-. | ..+.. ...+ ..-..++.+.+.. ......+++|||+|.+... ..+
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-----------a~n 145 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-----------AFN 145 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-----------HHH
Confidence 00 0 00000 0011 1123455544443 2234569999999887421 235
Q ss_pred HHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCC-CCcccHHHHHHHhCC
Q 005014 243 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 321 (719)
Q Consensus 243 ~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g 321 (719)
.|+..++.... .+++|.+|+.+..+-+.+++ |. ..+++..++..+-...+...++.... .++..+..++..+.|
T Consensus 146 aLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 67777765432 34455555667788888876 55 67899999988877777655443222 233346777777765
No 288
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.97 E-value=3.6e-09 Score=97.57 Aligned_cols=128 Identities=38% Similarity=0.510 Sum_probs=79.7
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCe---EEEEechhhhhh--------------cccchHHHHHHHHHHHHhcCCcE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAF---FFCINGPEIMSK--------------LAGESESNLRKAFEEAEKNAPSI 216 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~---~i~v~~~~l~~~--------------~~g~~~~~l~~vf~~a~~~~p~i 216 (719)
+.+++|+||||||||++++.+|..+... ++.+++...... ...........+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999998765 777776543221 11234456678888888877899
Q ss_pred EEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCC-CCCCCHHhhccCCCceEEEeCCC
Q 005014 217 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR-PNSIDPALRRFGRFDREIDIGVP 288 (719)
Q Consensus 217 L~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~-~~~ld~al~r~~Rf~~~i~i~~P 288 (719)
+++||++.+......... ...................+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALL-----LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHH-----HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988654311000 00000001111222345677777775 3334444444 77777776543
No 289
>PRK06620 hypothetical protein; Validated
Probab=98.96 E-value=1.1e-08 Score=102.01 Aligned_cols=133 Identities=15% Similarity=0.239 Sum_probs=87.4
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCch
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 234 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~ 234 (719)
..++||||||||||+|++++++..+..++. .... ....+ ....+|+||||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 579999999999999999999987753322 1100 00111 233689999999441
Q ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCC--CCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC--CCCCCcc
Q 005014 235 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS--IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDV 310 (719)
Q Consensus 235 ~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~--ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~--~~l~~~~ 310 (719)
. ..|..+++.+...+..++++++..|.. + +++++.-.....+.+..|+.+.+..+++..... +.+.++
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~e- 170 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQ- 170 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHH-
Confidence 0 234555555555566778877776654 4 778873233346899999999999999876543 334333
Q ss_pred cHHHHHHHhCC
Q 005014 311 DLERIAKDTHG 321 (719)
Q Consensus 311 ~l~~la~~t~g 321 (719)
-+..++....+
T Consensus 171 v~~~L~~~~~~ 181 (214)
T PRK06620 171 IIDFLLVNLPR 181 (214)
T ss_pred HHHHHHHHccC
Confidence 46777777664
No 290
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.95 E-value=3.2e-09 Score=112.10 Aligned_cols=158 Identities=25% Similarity=0.425 Sum_probs=98.4
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCC-ceEEEECCCCCChHHHHHHHHHHhCC-------e--EEEE
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP-KGILLYGPPGSGKTLIARAVANETGA-------F--FFCI 185 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~-~~vLL~GppGtGKTtla~~la~~l~~-------~--~i~v 185 (719)
.+.|++|.|.++.++.+.-... .++ .++||.|+||+||||+++++++.++. + +..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4678999999998877654321 122 47999999999999999999999842 1 1111
Q ss_pred ec-hhh--------hh---------------hcccc--hHHHH---HHHHHHH--HhcCCcEEEEccccccCCCCCCCch
Q 005014 186 NG-PEI--------MS---------------KLAGE--SESNL---RKAFEEA--EKNAPSIIFIDEIDSIAPKREKTHG 234 (719)
Q Consensus 186 ~~-~~l--------~~---------------~~~g~--~~~~l---~~vf~~a--~~~~p~iL~iDEid~l~~~~~~~~~ 234 (719)
.+ .+. .. ...|. ....+ +..|+.- ......+||+||++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------- 142 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------- 142 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence 10 000 00 01110 00000 0011100 011125899999998742
Q ss_pred HHHHHHHHHHHHHhhccc-----------CCCcEEEEEecCCCC-CCCHHhhccCCCceEEEeCCCCh-HHHHHHHHHH
Q 005014 235 EVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVLRIH 300 (719)
Q Consensus 235 ~~~~~v~~~L~~~l~~~~-----------~~~~vivI~atn~~~-~ld~al~r~~Rf~~~i~i~~P~~-~~R~~il~~~ 300 (719)
.+...|+..|+.-. ...++++++++|+.+ .+++++.. ||...+.++.|.. ++|.+|+...
T Consensus 143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 34556666665321 234688899888755 57888887 9999999998877 8899998764
No 291
>PRK04132 replication factor C small subunit; Provisional
Probab=98.95 E-value=1.3e-08 Score=118.37 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=114.4
Q ss_pred eeeec--CCCCchhHHHHHHHHHh-----CCeEEEEeccchhhhccCCchhhHHHHHHHHHhC------CCEEEEEeccc
Q 005014 430 VLFYG--PPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQS------APCVLFFDELD 496 (719)
Q Consensus 430 ill~G--ppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~------~p~il~iDEid 496 (719)
-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..++.+.+.+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45668 99999999999999997 56899999988532 23566665543322 23699999999
Q ss_pred hhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHH
Q 005014 497 SIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC 576 (719)
Q Consensus 497 ~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 576 (719)
.+. ....+.|+..|+... .++.+|++||.++.+-+++.+ |+ ..+.|++|+.++....++..
T Consensus 641 ~Lt--------------~~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALT--------------QDAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCC--------------HHHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 983 234678888888643 467889999999999999987 88 48999999999999889888
Q ss_pred hccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 577 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 577 ~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
+.+.++. .+..+..++..++| +.+..-++++.++
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 8765543 23456677777664 3444444554443
No 292
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.4e-08 Score=111.17 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=109.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEE--------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-------- 184 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~-------- 184 (719)
++.+-+|++|.|.+..++.|+..+... ..+..+||+||||+||||+|+++|+.+.+.-..
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 456678999999999999888877531 223469999999999999999999998652100
Q ss_pred --Eec------hhhhh-------hccc---chHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHH
Q 005014 185 --ING------PEIMS-------KLAG---ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 242 (719)
Q Consensus 185 --v~~------~~l~~-------~~~g---~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~ 242 (719)
-.| ..+.. ...+ ..-..++.+.+.+. .....++||||+|.+... ..+
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-----------~~~ 145 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-----------AFN 145 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-----------HHH
Confidence 000 00000 0001 11234555444432 233469999999988421 234
Q ss_pred HHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCC-CCcccHHHHHHHhCC
Q 005014 243 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 321 (719)
Q Consensus 243 ~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g 321 (719)
.|+..++... ...++|.+++.+..+.+.+++ |. ..+++..++.++-...++..++.... .++..+..++..+.|
T Consensus 146 ~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g 220 (397)
T PRK14955 146 AFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG 220 (397)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5666665432 244445455666777777776 44 35788888888777777665543222 223345666666654
No 293
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=7.4e-09 Score=109.69 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=101.2
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHhCC------------------------eEEEEeccchhhhccCCchhhHHHHHHH
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 481 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~~f~~ 481 (719)
.+..+||+||+|+|||++|+++|..+.+ .++.+...+- ++. -+-..||.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 4567999999999999999999988643 1222221100 000 123456666555
Q ss_pred HH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcce
Q 005014 482 AR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 557 (719)
Q Consensus 482 a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~ 557 (719)
+. .....|++||++|.+. ....|.||+.|+.- ..++++|.+|+.++.|.|.+++ |+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HhhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hce-
Confidence 43 3446799999999973 35679999999864 3578888999999999999998 996
Q ss_pred EEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccC
Q 005014 558 LIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 597 (719)
Q Consensus 558 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~ 597 (719)
.+.|++|+.++....++..... ..+.+...++..+.|
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 6999999999888887765311 122334455555554
No 294
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.93 E-value=5.8e-10 Score=103.63 Aligned_cols=109 Identities=28% Similarity=0.413 Sum_probs=68.5
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhh------hhcccc---hHHHHHHHHHHHHhcCCcEEEEccccccC
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------SKLAGE---SESNLRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~------~~~~g~---~~~~l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
+|+|+||||||||++++.+|..++.+++.++++... +.+.-. ....-..+.+.. ..+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 589999999999999999999999999888875432 211110 000000000011 146899999998653
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhccc-----------CCC------cEEEEEecCCCC----CCCHHhhccCCC
Q 005014 227 PKREKTHGEVERRIVSQLLTLMDGLK-----------SRA------HVIVIGATNRPN----SIDPALRRFGRF 279 (719)
Q Consensus 227 ~~~~~~~~~~~~~v~~~L~~~l~~~~-----------~~~------~vivI~atn~~~----~ld~al~r~~Rf 279 (719)
..+...|+.+++.-. ... ++.+|+|+|+.. .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 234555666665311 111 389999999988 88999987 65
No 295
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.93 E-value=6.2e-09 Score=111.34 Aligned_cols=125 Identities=29% Similarity=0.414 Sum_probs=91.2
Q ss_pred ceeeecCCCCchhHHHHHHHHHhC------------------------CeEEEEeccchhhhccCCchhhHHHHHHHHHh
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQ------------------------ANFISVKGPELLTMWFGESEANVREIFDKARQ 484 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~------------------------~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~ 484 (719)
.+||+||||+|||++|.++|+.+. ..++.++.++....- .....++.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 599999999999999999999876 477888877754321 123445554443322
Q ss_pred ----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEE
Q 005014 485 ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 560 (719)
Q Consensus 485 ----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~ 560 (719)
....|+++||+|.+.. ...+.++..|.. ...+..+|.+||.++.+-|.+.+ |+. ++.
T Consensus 104 ~~~~~~~kviiidead~mt~--------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~ 164 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RCQ-RIR 164 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cce-eee
Confidence 3457999999999843 456788888774 34567889999999999888877 885 888
Q ss_pred eCCCCHHHHHHHHH
Q 005014 561 IPLPDEESRLQIFK 574 (719)
Q Consensus 561 ~~~p~~~~r~~Il~ 574 (719)
|++|+...+....+
T Consensus 165 f~~~~~~~~i~~~e 178 (325)
T COG0470 165 FKPPSRLEAIAWLE 178 (325)
T ss_pred cCCchHHHHHHHhh
Confidence 98876655544444
No 296
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.92 E-value=3.5e-09 Score=116.11 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=27.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETGA 180 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~~ 180 (719)
+.+.+++.+.|+|.+||||||+++++-+.+..
T Consensus 30 f~v~~GE~lgIvGESGsGKSt~a~~i~gll~~ 61 (539)
T COG1123 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPE 61 (539)
T ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhccCCC
Confidence 35678999999999999999999999877643
No 297
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=3.4e-08 Score=113.35 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=112.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE---e---
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI---N--- 186 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v---~--- 186 (719)
++.+-+|+++.|.+..++.|+..+... ..+..+||+||+|+|||++++++|+.+++..... .
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 456678999999999999888776531 1234689999999999999999999886422100 0
Q ss_pred c---hhhhh----------hcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhh
Q 005014 187 G---PEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 249 (719)
Q Consensus 187 ~---~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~ 249 (719)
| ..+.. ......-..++.+.+.+.. ....|+||||+|.+.. ...+.|+..++
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naLLk~LE 145 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNALLKTLE 145 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHHHHHHh
Confidence 0 01100 0000112334444443322 3346999999998742 12355666676
Q ss_pred cccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 250 GLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 250 ~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
... ..+++|.+++.++.+.+.+++ |+ ..+.|..++..+...++........+. +...+..++..+.|
T Consensus 146 epp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 146 EPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred cCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 543 345555566667777777876 55 457898898888888777665443322 22336666666654
No 298
>PRK09087 hypothetical protein; Validated
Probab=98.91 E-value=2e-08 Score=100.99 Aligned_cols=139 Identities=23% Similarity=0.303 Sum_probs=91.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCch
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 234 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~ 234 (719)
..++|+||+|||||+|+++++...+..+ ++..++.. .++..... .+|+|||++.+... .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~~----~- 103 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAAE---GPVLIEDIDAGGFD----E- 103 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhhc---CeEEEECCCCCCCC----H-
Confidence 4599999999999999999998876553 33322211 11111111 38899999976311 1
Q ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC---CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-Ccc
Q 005014 235 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDV 310 (719)
Q Consensus 235 ~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l---d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~ 310 (719)
..|..+++.....+..+|++++..|..+ .+.+++.-.....+++..|+.+.|.++++..+....+. .+.
T Consensus 104 -------~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~e 176 (226)
T PRK09087 104 -------TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPH 176 (226)
T ss_pred -------HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 2356666666565667777777666533 57787733345788999999999999999876543322 233
Q ss_pred cHHHHHHHhCC
Q 005014 311 DLERIAKDTHG 321 (719)
Q Consensus 311 ~l~~la~~t~g 321 (719)
.+..++++..+
T Consensus 177 v~~~La~~~~r 187 (226)
T PRK09087 177 VVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHhhh
Confidence 47777777664
No 299
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.91 E-value=7.6e-10 Score=107.25 Aligned_cols=142 Identities=30% Similarity=0.440 Sum_probs=65.6
Q ss_pred cccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC----e------EEEEec-
Q 005014 392 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----N------FISVKG- 460 (719)
Q Consensus 392 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~----~------~i~v~~- 460 (719)
|.+|.|++.+|+.|.-... | ..++||+||||||||++|+.+...+-. . ..++.+
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 6789999999999875543 2 357999999999999999999987510 0 000000
Q ss_pred ---------cchhhhccCCchhhH-H-------HHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHH
Q 005014 461 ---------PELLTMWFGESEANV-R-------EIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 523 (719)
Q Consensus 461 ---------~~l~~~~~g~se~~i-~-------~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ 523 (719)
.-+....-..++..+ . -.+..|- -.|||+||+-.+ .+++++.|++-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhc--------------CHHHHHHHHHH
Confidence 000000000011000 0 0111222 259999998654 46789999998
Q ss_pred hcCCC-----------CCCcEEEEEecCC-----------------------CCCCCcccCCCCCcceEEEeCCCCHH
Q 005014 524 MDGMS-----------AKKTVFIIGATNR-----------------------PDIIDPALLRPGRLDQLIYIPLPDEE 567 (719)
Q Consensus 524 ld~~~-----------~~~~v~vi~atn~-----------------------~~~ld~allrpgRf~~~i~~~~p~~~ 567 (719)
|+.-. -..++++|+|+|. ...|...++. |||..+.++..+.+
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 86531 1235789999984 1245567776 88888888776654
No 300
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.90 E-value=3.1e-08 Score=105.84 Aligned_cols=155 Identities=24% Similarity=0.414 Sum_probs=104.8
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCC
Q 005014 154 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~ 228 (719)
-..++||||.|+|||+|++++++.. +..++++....+...+.......-..-|+.-. .-.+++||+++++..+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999876 24577777776655544332222233344433 4569999999999765
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC---CHHhhccCCCceEEEeCCCChHHHHHHHHHHhc--C
Q 005014 229 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--N 303 (719)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l---d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~--~ 303 (719)
.. ....+...+..+...+.-+|+++...|..+ .+.|++.......+.+.+|+.+.|..||+.... +
T Consensus 191 ~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 191 ER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred hh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 32 234455666666555666677666677655 588887444456678999999999999987543 4
Q ss_pred CCCCCcccHHHHHHHhC
Q 005014 304 MKLSDDVDLERIAKDTH 320 (719)
Q Consensus 304 ~~l~~~~~l~~la~~t~ 320 (719)
+.+.+++ +..++.+..
T Consensus 262 ~~i~~ev-~~~la~~~~ 277 (408)
T COG0593 262 IEIPDEV-LEFLAKRLD 277 (408)
T ss_pred CCCCHHH-HHHHHHHhh
Confidence 4444433 566666655
No 301
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.90 E-value=2.9e-08 Score=110.61 Aligned_cols=144 Identities=26% Similarity=0.400 Sum_probs=88.4
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC--eEEEEeccchh---
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL--- 464 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~--- 464 (719)
..|+++.|++.+++.+.-.+ .....++|+||||||||++++++++.+.. .-..+....+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 36788889988876655332 22346999999999999999999975411 00111111110
Q ss_pred -----------------------hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHH
Q 005014 465 -----------------------TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 521 (719)
Q Consensus 465 -----------------------~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 521 (719)
...+|.....-.-.+..|. ..+|||||++.+. ..+++.|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~--------------~~~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFK--------------RSVLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCC--------------HHHHHHHH
Confidence 0011111000001233332 2599999998762 45677777
Q ss_pred HHhcCCC-----------CCCcEEEEEecCCC------C-----------------CCCcccCCCCCcceEEEeCCCCHH
Q 005014 522 TEMDGMS-----------AKKTVFIIGATNRP------D-----------------IIDPALLRPGRLDQLIYIPLPDEE 567 (719)
Q Consensus 522 ~~ld~~~-----------~~~~v~vi~atn~~------~-----------------~ld~allrpgRf~~~i~~~~p~~~ 567 (719)
+.|+... -..++.+|+|+|.- + .|...|+. |||.++.+++++.+
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 7775421 12468899999962 1 47788888 99999999987554
No 302
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.90 E-value=2.5e-08 Score=104.88 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=105.8
Q ss_pred cccccHHHHHHhhhccccCCCChhhhhhhcCC-CCcceeeecCCCCchhHHHHHHHHHhCC-------eEEEEec----c
Q 005014 394 DIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG----P 461 (719)
Q Consensus 394 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~gill~GppGtGKT~la~~la~~~~~-------~~i~v~~----~ 461 (719)
++.|+++.+..+.+.+.... .|.. ..+.++|+|||||||||||++|++.++. +++.+++ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 79999999888876654211 1222 3456899999999999999999999865 8888877 4
Q ss_pred chhhhccCCchhhHHHHHHHHHh---------------------------------------------------------
Q 005014 462 ELLTMWFGESEANVREIFDKARQ--------------------------------------------------------- 484 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~~--------------------------------------------------------- 484 (719)
.+....++.-...++..|.....
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi 203 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDI 203 (361)
T ss_pred CCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccH
Confidence 44333333223333322221100
Q ss_pred -------------------------------CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC----C
Q 005014 485 -------------------------------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----A 529 (719)
Q Consensus 485 -------------------------------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----~ 529 (719)
.+..|+-|+|+.+. ..++++.||+.++... +
T Consensus 204 ~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~--------------~~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 204 SELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA--------------DIKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred HHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC--------------CHHHHHHHhhhhhcceEecCC
Confidence 00134444444332 3467888998887531 1
Q ss_pred -----CCcEEEEEecCCCC-------CCCcccCCCCCcceEEEeCCC-CHHHHHHHHHHHhccC
Q 005014 530 -----KKTVFIIGATNRPD-------IIDPALLRPGRLDQLIYIPLP-DEESRLQIFKACLRKS 580 (719)
Q Consensus 530 -----~~~v~vi~atn~~~-------~ld~allrpgRf~~~i~~~~p-~~~~r~~Il~~~~~~~ 580 (719)
.-..+||++||..+ ...+||++ |+. .+++|.| +..+-.+|.+..+...
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence 12368899999863 55789999 998 8999977 6778889999888653
No 303
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.89 E-value=1e-08 Score=112.68 Aligned_cols=194 Identities=23% Similarity=0.303 Sum_probs=128.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE--E------E
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--F------C 184 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~--i------~ 184 (719)
++.+-.|+++.|.+...+.|+..+..- .-....|+.||.||||||+||.+|+.+++.- . .
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 345668999999999999999888652 1224699999999999999999999987642 0 0
Q ss_pred Eechhhhh----------hcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 005014 185 INGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 250 (719)
Q Consensus 185 v~~~~l~~----------~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~ 250 (719)
..|..+.. ......-..+|.+.+.+. ....-|++|||+|.|.. ...+.|+..++.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE 145 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE 145 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc
Confidence 01111111 111112345666666543 34557999999998852 234556655554
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCC-cccHHHHHHHhCCCccccHHH
Q 005014 251 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD-DVDLERIAKDTHGYVGADLAA 329 (719)
Q Consensus 251 ~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~-~~~l~~la~~t~g~~~~dl~~ 329 (719)
...+|.+|.+|..+..+++.+++ |+ ..+.+...+.++-...|...+.+..+.. +..+..+++..+| +.+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 34578888888899999999887 55 4456777777777777776665544443 3346777777776 3466666
Q ss_pred HHHHHH
Q 005014 330 LCTEAA 335 (719)
Q Consensus 330 l~~~a~ 335 (719)
++..+.
T Consensus 220 lLDq~i 225 (515)
T COG2812 220 LLDQAI 225 (515)
T ss_pred HHHHHH
Confidence 666554
No 304
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=7.5e-09 Score=110.31 Aligned_cols=149 Identities=21% Similarity=0.208 Sum_probs=104.0
Q ss_pred ccccccc-cHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe---------------
Q 005014 391 NWEDIGG-LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 454 (719)
Q Consensus 391 ~~~~i~g-~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~--------------- 454 (719)
.|+.|.| ++.+.+.|...+.. -+.+..+||+||+|+|||++|+++|..+...
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4777776 88898888876542 2345668999999999999999999885321
Q ss_pred ---------EEEEeccchhhhccCCchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHH
Q 005014 455 ---------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 521 (719)
Q Consensus 455 ---------~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 521 (719)
+..+... +.. -.-..++.+.+.+. .....|++|||+|.+. ....|.||
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLL 131 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLL 131 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHH
Confidence 2222111 000 01234555554433 2335699999998873 34678999
Q ss_pred HHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHH
Q 005014 522 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKA 575 (719)
Q Consensus 522 ~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 575 (719)
+.|+.- ...+++|.+|+.++.|-|++++ |+. +++|++|+.++...+++.
T Consensus 132 K~LEEP--p~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEEP--SGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcCC--CCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 999964 3456677788888899999987 885 899999999887777754
No 305
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-08 Score=103.32 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=61.2
Q ss_pred EEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC--------CCCcEEEEEec----CCCCCCCcccCCCCCc
Q 005014 488 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGAT----NRPDIIDPALLRPGRL 555 (719)
Q Consensus 488 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~at----n~~~~ld~allrpgRf 555 (719)
.|+||||||.++.+.+.+.+ +-.-.-+...||-.++|.. ..+.+++|++- ..|..|=|.|. |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 69999999999987653221 2223346667777777642 34568888886 45888888887 699
Q ss_pred ceEEEeCCCCHHHHHHHH
Q 005014 556 DQLIYIPLPDEESRLQIF 573 (719)
Q Consensus 556 ~~~i~~~~p~~~~r~~Il 573 (719)
.-++++...+.+.-..||
T Consensus 328 PIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 328 PIRVELDALTKEDFERIL 345 (444)
T ss_pred ceEEEcccCCHHHHHHHH
Confidence 999999999999988887
No 306
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.86 E-value=8.9e-09 Score=111.92 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=81.3
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCC--eEEEEecc-chhhhccCCc-hhhH--HHHHHHHHhC---CCEEEEEeccch
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP-ELLTMWFGES-EANV--REIFDKARQS---APCVLFFDELDS 497 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~--~~i~v~~~-~l~~~~~g~s-e~~i--~~~f~~a~~~---~p~il~iDEid~ 497 (719)
..++||+||||||||++|++++..++. +|..+.+. ..-...+|.. -... ..-|...... ...++|+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 456999999999999999999997643 33333221 0111222311 0110 1122221111 234999999965
Q ss_pred hhcccCCCCCCCCCchHHHHHHHHHHhcCCC--------CCCcEEEEEecCCCC---CCCcccCCCCCcceEEEeCCCC-
Q 005014 498 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYIPLPD- 565 (719)
Q Consensus 498 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~atn~~~---~ld~allrpgRf~~~i~~~~p~- 565 (719)
+ ...+.+.||..|+.-. .....++++|||... ...+|++- ||-..+.+|+|+
T Consensus 119 a--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~ 182 (498)
T PRK13531 119 A--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQD 182 (498)
T ss_pred C--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCc
Confidence 3 3568889999985321 112346666777532 23458888 998899999997
Q ss_pred HHHHHHHHHHH
Q 005014 566 EESRLQIFKAC 576 (719)
Q Consensus 566 ~~~r~~Il~~~ 576 (719)
.++-.+|+...
T Consensus 183 ~~~e~~lL~~~ 193 (498)
T PRK13531 183 KANFRSMLTSQ 193 (498)
T ss_pred hHHHHHHHHcc
Confidence 56667777654
No 307
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.85 E-value=6.7e-08 Score=106.81 Aligned_cols=209 Identities=21% Similarity=0.277 Sum_probs=133.6
Q ss_pred ceeeecCCCCchhHHHHHHHHHh----------CCeEEEEeccchhh----------hccCCch------hhHHHHHHHH
Q 005014 429 GVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLT----------MWFGESE------ANVREIFDKA 482 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~----------~~~~i~v~~~~l~~----------~~~g~se------~~i~~~f~~a 482 (719)
.+.+.|-||||||.++..+.+++ .+.|+.|++-.+.+ .+.|+.- ..+..-|..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 37889999999999999988854 35788888876643 2233321 1222333311
Q ss_pred -HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccC--CCCCcc-eE
Q 005014 483 -RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALL--RPGRLD-QL 558 (719)
Q Consensus 483 -~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~all--rpgRf~-~~ 558 (719)
....++|++|||.|.|+.+. ..|+..|+..-- ..+.+++||+..|..+....-|. -..|++ ..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 23457999999999998643 334444433321 24567889999888665433222 012665 67
Q ss_pred EEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 005014 559 IYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSG--ADITEICQRACKYAIRENIEKDIERERRRSENPEAM 636 (719)
Q Consensus 559 i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg--~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~ 636 (719)
|.|.+++.++..+|+...++....-.+--++.+|+.-...|| +....+|++|...|-.+....
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~--------------- 635 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG--------------- 635 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc---------------
Confidence 899999999999999999977633233334555555555566 344468999998887766411
Q ss_pred ccccccccccccHHHHHHHHhhcCCCCCHHHH
Q 005014 637 EEDVEDEVAEIKAVHFEESMKYARRSVSDADI 668 (719)
Q Consensus 637 ~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~ 668 (719)
.......|+..|+.+|+..+.-+.-..-|
T Consensus 636 ---k~~~~q~v~~~~v~~Ai~em~~~~~~~~i 664 (767)
T KOG1514|consen 636 ---KLAVSQLVGILHVMEAINEMLASPYIKAL 664 (767)
T ss_pred ---cccccceeehHHHHHHHHHHhhhhHHHHh
Confidence 11224468888888888876554443333
No 308
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.84 E-value=1.2e-08 Score=97.84 Aligned_cols=112 Identities=26% Similarity=0.359 Sum_probs=73.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCC----eEEEEechhhhhhcccchHHHHHHHHHH----HHhcCCcEEEEccccc
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGA----FFFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDS 224 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~----~~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~iL~iDEid~ 224 (719)
|...+||+||+|||||.+|+++|..+.. +++.++++++.... +....+...+.. .......|+|+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3457999999999999999999999995 89999998876511 111111111111 1111123999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhccc---------CCCcEEEEEecCCC
Q 005014 225 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRP 266 (719)
Q Consensus 225 l~~~~~~~~~~~~~~v~~~L~~~l~~~~---------~~~~vivI~atn~~ 266 (719)
..+......+.....+.+.|+..+++-. ...++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9886443444444567788888886421 12478888888854
No 309
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.2e-07 Score=101.31 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=112.3
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-------EEEE--
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFCI-- 185 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~-------~i~v-- 185 (719)
.+..++++.|.++.++.|...+... .-+..+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 3456888999999999988877541 223469999999999999999999987551 1000
Q ss_pred --ech-----------hhh---hh--c------ccchHHHHHHHHHH----HHhcCCcEEEEccccccCCCCCCCchHHH
Q 005014 186 --NGP-----------EIM---SK--L------AGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVE 237 (719)
Q Consensus 186 --~~~-----------~l~---~~--~------~g~~~~~l~~vf~~----a~~~~p~iL~iDEid~l~~~~~~~~~~~~ 237 (719)
.|. ++. .. . ..-.-..++.+.+. +......|++|||+|.+-..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~--------- 156 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN--------- 156 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH---------
Confidence 111 000 00 0 00011233433332 22345579999999988422
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 005014 238 RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAK 317 (719)
Q Consensus 238 ~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~ 317 (719)
..+.|+..++.... +.++|..|+.++.+.+.+++ |+ ..+.+++|+.++-..+|........ .++..+..++.
T Consensus 157 --aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 157 --AANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred --HHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 23567777876443 34444456778888899987 77 6899999999999999876432211 11223455666
Q ss_pred HhCCC
Q 005014 318 DTHGY 322 (719)
Q Consensus 318 ~t~g~ 322 (719)
.+.|-
T Consensus 229 ~s~G~ 233 (351)
T PRK09112 229 RSKGS 233 (351)
T ss_pred HcCCC
Confidence 66554
No 310
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.83 E-value=6.2e-08 Score=96.17 Aligned_cols=108 Identities=29% Similarity=0.285 Sum_probs=64.4
Q ss_pred CEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC-------------CCCCCcccCCCC
Q 005014 487 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-------------PDIIDPALLRPG 553 (719)
Q Consensus 487 p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~-------------~~~ld~allrpg 553 (719)
|.|+||||++.|- -+.+..|-..++.-. .-+||+|||+ |.-+.+.|+.
T Consensus 297 PGVLFIDEVhMLD--------------iEcFTyL~kalES~i---aPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD--------------IECFTYLHKALESPI---APIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred CcceEeeehhhhh--------------hHHHHHHHHHhcCCC---CceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 6677777777651 234444444444322 2478888886 4556667766
Q ss_pred CcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 005014 554 RLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYA 614 (719)
Q Consensus 554 Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~~~~~sg~di~~~~~~A~~~a 614 (719)
|+ .+|..-+++.++.++|++...+...+.-+ .-+..|+.....-|-+..-+++.-|...|
T Consensus 358 Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~a 418 (456)
T KOG1942|consen 358 RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILA 418 (456)
T ss_pred he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHH
Confidence 65 36666688999999999998876665422 22455555543334444444444444444
No 311
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.83 E-value=1.3e-07 Score=111.12 Aligned_cols=130 Identities=24% Similarity=0.303 Sum_probs=81.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhh------hhhc-c----cchHHHHHHHHHHHHhcCCcEEEEcc
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI------MSKL-A----GESESNLRKAFEEAEKNAPSIIFIDE 221 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l------~~~~-~----g~~~~~l~~vf~~a~~~~p~iL~iDE 221 (719)
-++++||-|.||+|||+|+.++|+..|...+.++-++- .+.. + |+.... ..-|-.|.+. ...+++||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~-dapfL~amr~-G~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWM-DAPFLHAMRD-GGWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEec-ccHHHHHhhc-CCEEEeeh
Confidence 45789999999999999999999999999999986532 2211 1 111111 1122233333 24888999
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHHhhcc------------cCCCcEEEEEecCCCC------CCCHHhhccCCCceEE
Q 005014 222 IDSIAPKREKTHGEVERRIVSQLLTLMDGL------------KSRAHVIVIGATNRPN------SIDPALRRFGRFDREI 283 (719)
Q Consensus 222 id~l~~~~~~~~~~~~~~v~~~L~~~l~~~------------~~~~~vivI~atn~~~------~ld~al~r~~Rf~~~i 283 (719)
+.... +.++.-|..++|.. ...+++.|.||.|+-+ .++..+.. || ..+
T Consensus 1620 iNLaS-----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV 1685 (4600)
T COG5271 1620 INLAS-----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVV 1685 (4600)
T ss_pred hhhhH-----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heE
Confidence 87432 34556666666532 2345788888888653 45666665 77 445
Q ss_pred EeCCCChHHHHHHHH
Q 005014 284 DIGVPDEVGRLEVLR 298 (719)
Q Consensus 284 ~i~~P~~~~R~~il~ 298 (719)
.+...+......|..
T Consensus 1686 ~~d~lt~dDi~~Ia~ 1700 (4600)
T COG5271 1686 KMDGLTTDDITHIAN 1700 (4600)
T ss_pred EecccccchHHHHHH
Confidence 666665555555544
No 312
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.83 E-value=4e-08 Score=110.91 Aligned_cols=163 Identities=19% Similarity=0.208 Sum_probs=97.1
Q ss_pred ccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC-eEEEE---eccchhhh----
Q 005014 395 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISV---KGPELLTM---- 466 (719)
Q Consensus 395 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~-~~i~v---~~~~l~~~---- 466 (719)
+.|.+.+|..+.-.+...... ..-....+....++||+|+||||||++|++++..... .|+.. ++..+...
T Consensus 205 i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 568888887775443321110 0001112222336999999999999999999998643 33321 11112110
Q ss_pred -ccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----------CCCcEE
Q 005014 467 -WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVF 534 (719)
Q Consensus 467 -~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~ 534 (719)
..|+..-.-. .+..| ...++++||++.+- ......|+..|+.-. -..+..
T Consensus 284 ~~~g~~~~~~G-~l~~A---~~Gil~iDEi~~l~--------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLEGG-ALVLA---DNGVCCIDEFDKMD--------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEecCc-cEEec---CCCEEEEechhhCC--------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 0111000000 11122 23599999999973 234556666665321 124678
Q ss_pred EEEecCCCC-------------CCCcccCCCCCcceEEEe-CCCCHHHHHHHHHHHhc
Q 005014 535 IIGATNRPD-------------IIDPALLRPGRLDQLIYI-PLPDEESRLQIFKACLR 578 (719)
Q Consensus 535 vi~atn~~~-------------~ld~allrpgRf~~~i~~-~~p~~~~r~~Il~~~~~ 578 (719)
||+|+|..+ .|++++++ |||.+..+ ..|+.+...+|.++.+.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999999752 58999999 99986654 78999999999988764
No 313
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.82 E-value=1.8e-08 Score=107.73 Aligned_cols=129 Identities=30% Similarity=0.431 Sum_probs=86.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh--hcccchHHHHH------------HHHHHHHhcCCcEEE
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS--KLAGESESNLR------------KAFEEAEKNAPSIIF 218 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~--~~~g~~~~~l~------------~vf~~a~~~~p~iL~ 218 (719)
.+.++||.||||||||++++.+|..++.+++.+.|..-.. ...|...-... -+|.... ++++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 4578999999999999999999999999999999864321 11221111110 0111111 4999
Q ss_pred EccccccCCCCCCCchHHHHHHHHHHHHHhhc----------ccCCCcEEEEEecCC-----CCCCCHHhhccCCCceEE
Q 005014 219 IDEIDSIAPKREKTHGEVERRIVSQLLTLMDG----------LKSRAHVIVIGATNR-----PNSIDPALRRFGRFDREI 283 (719)
Q Consensus 219 iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~----------~~~~~~vivI~atn~-----~~~ld~al~r~~Rf~~~i 283 (719)
+|||+...+ .+.+.|+..|+. +.-...+++++|+|+ ...+++++++ ||...+
T Consensus 118 ~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 999987643 244666777664 334467888888894 3467889987 998889
Q ss_pred EeCCCChH-HHHHHHH
Q 005014 284 DIGVPDEV-GRLEVLR 298 (719)
Q Consensus 284 ~i~~P~~~-~R~~il~ 298 (719)
.++.|+.+ +...++.
T Consensus 185 ~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 185 YVDYPDSEEEERIILA 200 (329)
T ss_pred ecCCCCchHHHHHHHH
Confidence 99999444 4444443
No 314
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.81 E-value=1.5e-07 Score=96.15 Aligned_cols=204 Identities=19% Similarity=0.267 Sum_probs=115.5
Q ss_pred cchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC---------CeEEEEechh----
Q 005014 123 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPE---- 189 (719)
Q Consensus 123 ~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~---------~~~i~v~~~~---- 189 (719)
+|+..+.+.+..+-.+ +.+|. .....++||+|++|.|||++++..+.... .+++.+..+.
T Consensus 37 IgY~~A~~~L~~L~~L-l~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 37 IGYPRAKEALDRLEEL-LEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred ecCHHHHHHHHHHHHH-HhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 5555554444433333 33342 22345799999999999999999987653 2455555421
Q ss_pred --hh----h----hc--ccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcE
Q 005014 190 --IM----S----KL--AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV 257 (719)
Q Consensus 190 --l~----~----~~--~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~v 257 (719)
+. . .+ .......-..+....+...+.+|+|||++.++... ....+.+++.|..+...+ +-.+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs----~~~qr~~Ln~LK~L~NeL--~ipi 183 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS----YRKQREFLNALKFLGNEL--QIPI 183 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc----HHHHHHHHHHHHHHhhcc--CCCe
Confidence 11 0 00 11222333445566677788899999999976332 112233334333332222 2355
Q ss_pred EEEEecCCCCC--CCHHhhccCCCceEEEeCCC-ChHHHHHHHHHHhcCCCCCCcc------cHHHHHHHhCCCccccHH
Q 005014 258 IVIGATNRPNS--IDPALRRFGRFDREIDIGVP-DEVGRLEVLRIHTKNMKLSDDV------DLERIAKDTHGYVGADLA 328 (719)
Q Consensus 258 ivI~atn~~~~--ld~al~r~~Rf~~~i~i~~P-~~~~R~~il~~~~~~~~l~~~~------~l~~la~~t~g~~~~dl~ 328 (719)
+.+|+...... -|+.+.+ ||.. +.+|.= .-++...++..+...+++.... -...+-..+.|..| ++.
T Consensus 184 V~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~ 259 (302)
T PF05621_consen 184 VGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELS 259 (302)
T ss_pred EEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHH
Confidence 56665443332 2677776 8854 344422 2234455666666666554222 23566677888765 578
Q ss_pred HHHHHHHHHHHHhhc
Q 005014 329 ALCTEAALQCIREKM 343 (719)
Q Consensus 329 ~l~~~a~~~~~~~~~ 343 (719)
.++..|+..+++...
T Consensus 260 ~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 260 RLLNAAAIAAIRSGE 274 (302)
T ss_pred HHHHHHHHHHHhcCC
Confidence 888889888887654
No 315
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.81 E-value=6.1e-08 Score=104.68 Aligned_cols=122 Identities=29% Similarity=0.458 Sum_probs=74.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCe-------EEEEec----hhhhhhcc----cch--HHHHHHHHHHHHh--cC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAF-------FFCING----PEIMSKLA----GES--ESNLRKAFEEAEK--NA 213 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~-------~i~v~~----~~l~~~~~----g~~--~~~l~~vf~~a~~--~~ 213 (719)
.+++++|+||||||||++|+.+|..+... .+.+.. .+++..+. |.. ...+..+++.|.. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 35689999999999999999999987531 122221 22222111 100 1123334455544 35
Q ss_pred CcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhh--------------------cccCCCcEEEEEecCCCC----CC
Q 005014 214 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD--------------------GLKSRAHVIVIGATNRPN----SI 269 (719)
Q Consensus 214 p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~--------------------~~~~~~~vivI~atn~~~----~l 269 (719)
|++||||||+..-... +...+..+++ .+....++.||||+|..+ .+
T Consensus 273 ~~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~l 342 (459)
T PRK11331 273 KYVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred CcEEEEehhhccCHHH----------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhc
Confidence 7999999998654221 1222222222 233446899999999887 68
Q ss_pred CHHhhccCCCceEEEeCC
Q 005014 270 DPALRRFGRFDREIDIGV 287 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~ 287 (719)
|.|++| ||.. |++.+
T Consensus 343 D~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 343 DYALRR--RFSF-IDIEP 357 (459)
T ss_pred cHHHHh--hhhe-EEecC
Confidence 999999 7843 55553
No 316
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.80 E-value=2.5e-09 Score=95.02 Aligned_cols=104 Identities=30% Similarity=0.432 Sum_probs=59.4
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEEecc-chh-hhccCC-----chh----hHHHHHHHHHhCCCEEEEEeccch
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELL-TMWFGE-----SEA----NVREIFDKARQSAPCVLFFDELDS 497 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v~~~-~l~-~~~~g~-----se~----~i~~~f~~a~~~~p~il~iDEid~ 497 (719)
++||.|+||+|||++|+++|..++..|..|.+. ++. +...|. ... .-.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 489999999999999999999999999888763 333 111111 000 112223 24999999976
Q ss_pred hhcccCCCCCCCCCchHHHHHHHHHHhcCCC---------CCCcEEEEEecCCCC-----CCCcccCCCCCc
Q 005014 498 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPD-----IIDPALLRPGRL 555 (719)
Q Consensus 498 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~atn~~~-----~ld~allrpgRf 555 (719)
. ..++.+.||..|..-. -.+.++||+|-|..+ .|++|++. ||
T Consensus 74 a--------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A--------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S---------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C--------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 3 4577888888886531 134588999999866 56777776 76
No 317
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.80 E-value=2.8e-08 Score=105.18 Aligned_cols=160 Identities=21% Similarity=0.335 Sum_probs=99.2
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC-------eEEE-Ee
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFFC-IN 186 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~-------~~i~-v~ 186 (719)
..+.|++|.|+++.+..|...... | ...++||.|++|||||+++|+++..+.. +|.. -+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~----p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVID----P---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccC----C---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 355899999999988777654432 2 1247999999999999999999887642 1210 00
Q ss_pred -----chhhhhhc-------------------ccchHHH------HHHHHHHHH---------hcCCcEEEEccccccCC
Q 005014 187 -----GPEIMSKL-------------------AGESESN------LRKAFEEAE---------KNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 187 -----~~~l~~~~-------------------~g~~~~~------l~~vf~~a~---------~~~p~iL~iDEid~l~~ 227 (719)
+....+.. .+.++.. +...|.... .....+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 00000000 0111111 111111110 11236999999998853
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcc-----------cCCCcEEEEEecCCCC-CCCHHhhccCCCceEEEeCCCC-hHHHH
Q 005014 228 KREKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRL 294 (719)
Q Consensus 228 ~~~~~~~~~~~~v~~~L~~~l~~~-----------~~~~~vivI~atn~~~-~ld~al~r~~Rf~~~i~i~~P~-~~~R~ 294 (719)
. +...|+..|+.- ....+++++++.|+.+ .+.+++.. ||...+.+..|. .+.+.
T Consensus 159 ~-----------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 H-----------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred H-----------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 2 334566655431 1234688888888655 58888887 999999999998 58999
Q ss_pred HHHHHH
Q 005014 295 EVLRIH 300 (719)
Q Consensus 295 ~il~~~ 300 (719)
+|++..
T Consensus 226 ~il~~~ 231 (350)
T CHL00081 226 KIVEQR 231 (350)
T ss_pred HHHHhh
Confidence 999754
No 318
>PRK08116 hypothetical protein; Validated
Probab=98.80 E-value=1.3e-08 Score=105.05 Aligned_cols=129 Identities=25% Similarity=0.274 Sum_probs=80.3
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhcc----CCchhhHHHHHHHHHhCCCEEEEEeccchhh
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF----GESEANVREIFDKARQSAPCVLFFDELDSIA 499 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~----g~se~~i~~~f~~a~~~~p~il~iDEid~l~ 499 (719)
..|++|+|++|||||+||.++|+++ +.+++.++.++++..+. +.+......+++.... ..+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEecccCCC
Confidence 3579999999999999999999986 67888889888765432 2222223334444432 3599999986421
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC-CC----CCcccCCCCCc---ceEEEeCCCCHHHHHH
Q 005014 500 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-DI----IDPALLRPGRL---DQLIYIPLPDEESRLQ 571 (719)
Q Consensus 500 ~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~-~~----ld~allrpgRf---~~~i~~~~p~~~~r~~ 571 (719)
........|...+|...... ..+|.|||.+ +. ++.++.. |+ ...|.|+-+|. |..
T Consensus 192 ------------~t~~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~ 254 (268)
T PRK08116 192 ------------DTEWAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKE 254 (268)
T ss_pred ------------CCHHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHH
Confidence 12334455666666543222 3467788764 32 5667766 64 34566766664 444
Q ss_pred HHH
Q 005014 572 IFK 574 (719)
Q Consensus 572 Il~ 574 (719)
+.+
T Consensus 255 ~~~ 257 (268)
T PRK08116 255 IAK 257 (268)
T ss_pred HHH
Confidence 443
No 319
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.6e-07 Score=107.60 Aligned_cols=175 Identities=20% Similarity=0.291 Sum_probs=116.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 181 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------- 181 (719)
++.+-+|++|.|.+..++.|...+... ..+..+|||||+|+|||++|+.+|+.+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 455678999999999999988887531 123459999999999999999999987632
Q ss_pred --------------EEEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHH
Q 005014 182 --------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 243 (719)
Q Consensus 182 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~ 243 (719)
++.+++.+ ...-..++.+...+.. ....+++|||++.+.. ...+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~na 140 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNA 140 (614)
T ss_pred chHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHH
Confidence 12222211 0112445666555432 2345999999998842 13456
Q ss_pred HHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 244 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 244 L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
|+..++.... ..++|.+|+.+..+-+.+++ |. ..+.+..++..+-...+...+....+. +...+..++..+.|
T Consensus 141 LLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 141 FLKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7777776432 44555566667788888887 55 558899998888877777655443333 22346677777654
No 320
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.79 E-value=3.5e-08 Score=104.53 Aligned_cols=157 Identities=24% Similarity=0.357 Sum_probs=94.9
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC-------eEE-------
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFF------- 183 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~-------~~i------- 183 (719)
.|..|.|.++.+..+.-.+--| ...+++|.|+||+||||+++++++.+.. ++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4778999998877664333211 1357999999999999999999988732 111
Q ss_pred --EEechhh----------------hh--------hcccch--HHHHH---HHHHH--HHhcCCcEEEEccccccCCCCC
Q 005014 184 --CINGPEI----------------MS--------KLAGES--ESNLR---KAFEE--AEKNAPSIIFIDEIDSIAPKRE 230 (719)
Q Consensus 184 --~v~~~~l----------------~~--------~~~g~~--~~~l~---~vf~~--a~~~~p~iL~iDEid~l~~~~~ 230 (719)
..+|... .. ...|.. ...++ .+|+. .......+||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 0011110 00 111110 00000 00110 0012236999999998742
Q ss_pred CCchHHHHHHHHHHHHHhhccc-----------CCCcEEEEEecCCCC-CCCHHhhccCCCceEEEeCCCCh-HHHHHHH
Q 005014 231 KTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVL 297 (719)
Q Consensus 231 ~~~~~~~~~v~~~L~~~l~~~~-----------~~~~vivI~atn~~~-~ld~al~r~~Rf~~~i~i~~P~~-~~R~~il 297 (719)
.+...|+..|+.-. ...++++++++|..+ .+.+++.. ||...+.++.|.. ++|.+|+
T Consensus 146 --------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 --------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred --------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 23455666664311 124678888888655 68888887 9999999999976 8889998
Q ss_pred HHH
Q 005014 298 RIH 300 (719)
Q Consensus 298 ~~~ 300 (719)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 753
No 321
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.4e-08 Score=105.68 Aligned_cols=133 Identities=19% Similarity=0.246 Sum_probs=94.5
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCCe-------------------------EEEEeccchhh--------hc----
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------------------FISVKGPELLT--------MW---- 467 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~~-------------------------~i~v~~~~l~~--------~~---- 467 (719)
+.+.++||+||+|+||+++|+++|..+.+. +..+....... .|
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 556789999999999999999999876331 22221110000 00
Q ss_pred --cC---------CchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCc
Q 005014 468 --FG---------ESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 532 (719)
Q Consensus 468 --~g---------~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 532 (719)
-| -.-..||.+.+.+. .....|++||++|.+. ...-|.||+.|+. ...+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLEE--PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCcC
Confidence 00 01234566555432 2345699999999973 3467999999994 5667
Q ss_pred EEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHH
Q 005014 533 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC 576 (719)
Q Consensus 533 v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 576 (719)
+++|.+|++|+.|.|.+++ |+ ..++|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8999999999999999998 99 59999999999988888654
No 322
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.78 E-value=6.6e-07 Score=87.04 Aligned_cols=167 Identities=21% Similarity=0.277 Sum_probs=115.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 190 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l 190 (719)
.+.+.+.+|.|++.+++.|.+--..-+ .-.|..+|||+|..|||||+|++++-++. +..++.|+-.++
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~---------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFA---------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHH---------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 456788899999999988754432211 12456789999999999999999998876 456788887776
Q ss_pred hhhcccchHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc-cC-CCcEEEEEecCCCC
Q 005014 191 MSKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-KS-RAHVIVIGATNRPN 267 (719)
Q Consensus 191 ~~~~~g~~~~~l~~vf~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~-~~-~~~vivI~atn~~~ 267 (719)
.. +-.+++..+. ...-|||+|++-+=-. +. -...|-..+++- .. ..+|++-+|+|+..
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~g-------d~---~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSFEEG-------DD---AYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCCCCC-------ch---HHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 42 3334444333 3457999999754211 11 224566666653 22 34788889998765
Q ss_pred CCCH--------------------HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCC
Q 005014 268 SIDP--------------------ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD 308 (719)
Q Consensus 268 ~ld~--------------------al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~ 308 (719)
.++. .+.-..||.--+.|++++.++-..|+..+.+...+.-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4432 1122358999999999999999999998888776653
No 323
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.78 E-value=8.9e-08 Score=93.86 Aligned_cols=142 Identities=19% Similarity=0.277 Sum_probs=91.7
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCe------------------------EEEEechhhhhhcccchHHHHHHHHHHH
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 209 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 209 (719)
+..+||+||+|+|||++++.++..+... +..+... .. ...-..++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC--cCCHHHHHHHHHHH
Confidence 4569999999999999999999987432 1111110 00 01124555555554
Q ss_pred Hh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEe
Q 005014 210 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 285 (719)
Q Consensus 210 ~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i 285 (719)
.. ....+++|||+|.+... ..+.|+..++.... ...+|.+++.+..+.+++++ |+ ..+.+
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 33 44569999999887432 23557777766332 34455556677889999987 66 57999
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCC
Q 005014 286 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 321 (719)
Q Consensus 286 ~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g 321 (719)
++|+.++..+++... + +. ...+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~--g--i~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ--G--IS-EEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc--C--CC-HHHHHHHHHHcCC
Confidence 999999988888765 2 22 2335555555554
No 324
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.77 E-value=1.8e-08 Score=96.95 Aligned_cols=183 Identities=21% Similarity=0.278 Sum_probs=102.9
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-C----CeEEEEeccch
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-Q----ANFISVKGPEL 463 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-~----~~~i~v~~~~l 463 (719)
+..+.||.|.++..+.|.-+... |- ..+++|.|||||||||.+.++|+++ | -.++.+++++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~-----------gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE-----------GN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc-----------CC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 34578899999988887644321 21 2359999999999999999999986 3 24566777663
Q ss_pred hhhccCCchhhHHHHHHHHHh-CCC---EEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEec
Q 005014 464 LTMWFGESEANVREIFDKARQ-SAP---CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 539 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f~~a~~-~~p---~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~at 539 (719)
.+- +.-++--..|..-+- .+| .|+++||+|++.. ..+.+.+| .|+-..+. .-+..++
T Consensus 90 RGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-------gAQQAlRR-------tMEiyS~t--tRFalaC 150 (333)
T KOG0991|consen 90 RGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-------GAQQALRR-------TMEIYSNT--TRFALAC 150 (333)
T ss_pred ccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-------HHHHHHHH-------HHHHHccc--chhhhhh
Confidence 221 111222234432221 222 5999999999843 11222222 23322222 2356678
Q ss_pred CCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHH
Q 005014 540 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 540 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A 610 (719)
|.-+.|=+.+.+ |+. ++.|...+..+...=+....+...+. .+.-++.+..-++| |+++.++..
T Consensus 151 N~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnL 215 (333)
T KOG0991|consen 151 NQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNL 215 (333)
T ss_pred cchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHH
Confidence 887776665655 664 45555555555444444444333332 22335555554444 666555443
No 325
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.77 E-value=8.7e-08 Score=109.62 Aligned_cols=132 Identities=22% Similarity=0.306 Sum_probs=91.2
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCC--eEEEEeccchhhhccCCch--hhHH---H-----HHHHHHhCCCEEEEEecc
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESE--ANVR---E-----IFDKARQSAPCVLFFDEL 495 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~~~~~g~se--~~i~---~-----~f~~a~~~~p~il~iDEi 495 (719)
.|+||.|+||||||++|++++..+.. +|+.+.........+|... ..+. . ++..| .-.++|+|||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence 46999999999999999999998754 5887764322233333210 0000 0 01111 1249999999
Q ss_pred chhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCCC---CCCcccCCCCCcceEEEe
Q 005014 496 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYI 561 (719)
Q Consensus 496 d~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~atn~~~---~ld~allrpgRf~~~i~~ 561 (719)
+.+- ..+.+.|+..|+.-. -...+.||+|+|..+ .+.++|+. ||+.++.+
T Consensus 94 ~rl~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 94 NLLD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhCC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 9873 456788888886431 123578899999865 68889998 99998877
Q ss_pred C-CCCHHHHHHHHHHHhc
Q 005014 562 P-LPDEESRLQIFKACLR 578 (719)
Q Consensus 562 ~-~p~~~~r~~Il~~~~~ 578 (719)
. +|+.++|.+|++..+.
T Consensus 158 ~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERC 175 (589)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 6 4578889999988763
No 326
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.77 E-value=3e-08 Score=105.55 Aligned_cols=169 Identities=24% Similarity=0.304 Sum_probs=103.9
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh-----hccCCchh-------hHHHHHHHHHhCCCEEEE
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-----MWFGESEA-------NVREIFDKARQSAPCVLF 491 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~-----~~~g~se~-------~i~~~f~~a~~~~p~il~ 491 (719)
...++|+|++||||+++|+++.... +.+|+.|+|..+.. .++|.... .....|..|. ...||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~ 105 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLF 105 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccC---CCeEE
Confidence 3469999999999999999998765 46899999987631 12221100 0012333333 35899
Q ss_pred EeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----C----CCcEEEEEecCCC-------CCCCcccCCCCCc
Q 005014 492 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRP-------DIIDPALLRPGRL 555 (719)
Q Consensus 492 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~----~~~v~vi~atn~~-------~~ld~allrpgRf 555 (719)
||||+.+. ..+...|+..++.-. + ..++-||+||+.. ..+.+.|.. ||
T Consensus 106 l~~i~~L~--------------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l 169 (326)
T PRK11608 106 LDELATAP--------------MLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RL 169 (326)
T ss_pred eCChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hc
Confidence 99999974 235566666665421 1 1247788888763 245566666 77
Q ss_pred -ceEEEeCCCCH--HHHHHHHHHHhccC----CCC--CccCHHHHHHHc-cCCCH--HHHHHHHHHHHHHH
Q 005014 556 -DQLIYIPLPDE--ESRLQIFKACLRKS----PVS--KDVDLRALAKYT-QGFSG--ADITEICQRACKYA 614 (719)
Q Consensus 556 -~~~i~~~~p~~--~~r~~Il~~~~~~~----~~~--~~~d~~~la~~~-~~~sg--~di~~~~~~A~~~a 614 (719)
...|++|+... ++...+++.++.+. +.. ..++-+.+.... ..|.| ++|+++++.|+..+
T Consensus 170 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 170 AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 35677776632 45566666665332 221 234444444332 34554 89999999988754
No 327
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=1e-07 Score=108.34 Aligned_cols=201 Identities=12% Similarity=0.150 Sum_probs=114.3
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEE-Eeccc---hh
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-VKGPE---LL 464 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~-v~~~~---l~ 464 (719)
+..++++.|.++..+.+..++... .++..+.+.++|+||||||||++++++|++++..++. ++... ..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 456788889888777777665321 1122333459999999999999999999998765433 11110 00
Q ss_pred hhc------------cCCchhhHHHHHHHHHh----------CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHH
Q 005014 465 TMW------------FGESEANVREIFDKARQ----------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 522 (719)
Q Consensus 465 ~~~------------~g~se~~i~~~f~~a~~----------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~ 522 (719)
..| +-..-...+.+...+.. ....|||+||++.++.. . .+.+..+|.
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----------~~~lq~lLr 220 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----------TRALHEILR 220 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----------HHHHHHHHH
Confidence 000 00112334444554431 34579999999987531 1 224445554
Q ss_pred -HhcCCCCCCcEEEEEecC-CCC--------------CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCC--CCC
Q 005014 523 -EMDGMSAKKTVFIIGATN-RPD--------------IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP--VSK 584 (719)
Q Consensus 523 -~ld~~~~~~~v~vi~atn-~~~--------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~--~~~ 584 (719)
.... ...+.+|++++ .|. .|.++++..-|.. +|.|++.........|+..+.... ...
T Consensus 221 ~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 221 WKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHhhc---CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 2221 22333444333 121 1336777322553 899999999998877777775432 111
Q ss_pred c------cCHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 005014 585 D------VDLRALAKYTQGFSGADITEICQRACKYAIR 616 (719)
Q Consensus 585 ~------~d~~~la~~~~~~sg~di~~~~~~A~~~a~~ 616 (719)
+ ..+..|+. .+++||+.++..-...+.+
T Consensus 297 ~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 297 KIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred ccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhc
Confidence 1 23444544 4556988877766655443
No 328
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.74 E-value=5.3e-08 Score=103.62 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=103.2
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhc-----cCCch-------hhHHHHHHHHHhCCCEEEE
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLF 491 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~se-------~~i~~~f~~a~~~~p~il~ 491 (719)
...+||+|++||||+++|+++.... +.+|+.|+|..+.... +|... ..-...|..|. ..+||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEE
Confidence 3559999999999999999998765 4699999998653211 11100 00111244443 35999
Q ss_pred EeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC---------CCCcEEEEEecCCC-------CCCCcccCCCCCc
Q 005014 492 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-------DIIDPALLRPGRL 555 (719)
Q Consensus 492 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~atn~~-------~~ld~allrpgRf 555 (719)
||||+.+. ..+...|+..++.-. ...++-||++||.. ..+.+.|.. ||
T Consensus 99 Ldei~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 99 LDELATAS--------------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred eCChHhCC--------------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 99999973 345566666665321 12357889999863 234455555 66
Q ss_pred c-eEEEeCCCC--HHHHHHHHHHHhccC----CCC--CccCHHHHHHHc-cCCC--HHHHHHHHHHHHHHH
Q 005014 556 D-QLIYIPLPD--EESRLQIFKACLRKS----PVS--KDVDLRALAKYT-QGFS--GADITEICQRACKYA 614 (719)
Q Consensus 556 ~-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~--~~~d~~~la~~~-~~~s--g~di~~~~~~A~~~a 614 (719)
. ..|.+|+.. .++...+++.++.+. +.. ..++-+.+.... ..|. -++|++++..|+..+
T Consensus 163 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 4 456666664 345566666666432 222 234444443332 2344 489999999988866
No 329
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=2.7e-07 Score=98.03 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=101.5
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--------EEEEechh
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--------FFCINGPE 189 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~--------~i~v~~~~ 189 (719)
+|++|.|.+..++.+...+... ..+..+||+||+|+|||++|+.+|+.+-+. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 5889999999999888877431 223468999999999999999999986432 2222211
Q ss_pred hhhhcccchHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCC
Q 005014 190 IMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 265 (719)
Q Consensus 190 l~~~~~g~~~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~ 265 (719)
.+.. -.-..++.+.+.. ......|++||++|.+-. ...+.|+..++... ..+++|.+|+.
T Consensus 69 -~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEepp--~~t~~il~~~~ 132 (313)
T PRK05564 69 -NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEPP--KGVFIILLCEN 132 (313)
T ss_pred -cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCC--CCeEEEEEeCC
Confidence 0111 1123455555532 234456999999987732 23466777787643 34444445577
Q ss_pred CCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 266 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 266 ~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
++.+-+.+++ |. ..+.+..|+.++-...+....
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 8899999988 65 578999999988877776543
No 330
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.72 E-value=4.1e-08 Score=104.63 Aligned_cols=199 Identities=22% Similarity=0.277 Sum_probs=122.2
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----CCeEEEEeccchhh
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLT 465 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----~~~~i~v~~~~l~~ 465 (719)
..+.+++|...--+.+.+.+.. -.+....+|++|++||||+.+|++|...+ +.+||.+||..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 3456666665544444443321 01123459999999999999999998554 56899999987753
Q ss_pred h-------------ccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC-----
Q 005014 466 M-------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM----- 527 (719)
Q Consensus 466 ~-------------~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~----- 527 (719)
. |.| ....-.-+|+.|... ++|+|||..+.. .....|++.||..
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~--------------~~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP--------------EGQEKLLRVLEEGEYRRV 205 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH--------------hHHHHHHHHHHcCceEec
Confidence 2 333 223334566666554 999999998743 3456777777763
Q ss_pred CC----CCcEEEEEecCC--CCCCCc--ccCCCCCcceEEEeCCCCH--HHHHHHHHHHhc----cCCCCCccCHHHHHH
Q 005014 528 SA----KKTVFIIGATNR--PDIIDP--ALLRPGRLDQLIYIPLPDE--ESRLQIFKACLR----KSPVSKDVDLRALAK 593 (719)
Q Consensus 528 ~~----~~~v~vi~atn~--~~~ld~--allrpgRf~~~i~~~~p~~--~~r~~Il~~~~~----~~~~~~~~d~~~la~ 593 (719)
.+ ..+|.+|+|||. ++.+-. .|.+. |+...|.+|+.-+ +++..+.+++++ +.......+.....+
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 11 236889999985 222323 44441 5666777776643 445555555553 444443333323322
Q ss_pred Hc--cCCC--HHHHHHHHHHHHHHHHHHH
Q 005014 594 YT--QGFS--GADITEICQRACKYAIREN 618 (719)
Q Consensus 594 ~~--~~~s--g~di~~~~~~A~~~a~~~~ 618 (719)
.. ..|. -++++++++.++..+....
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQASGEG 313 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHhcccc
Confidence 22 2234 4999999999999885443
No 331
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=5.4e-07 Score=95.54 Aligned_cols=236 Identities=19% Similarity=0.249 Sum_probs=140.4
Q ss_pred ccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----C-CeEEEEeccchh-----
Q 005014 395 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----Q-ANFISVKGPELL----- 464 (719)
Q Consensus 395 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----~-~~~i~v~~~~l~----- 464 (719)
+.|-+.-...+++++... +....++++.+.|-||||||.+..-+-... . ...+++++..+.
T Consensus 152 l~gRe~e~~~v~~F~~~h---------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLH---------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred ccchHHHHHHHHHHHHhh---------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 334455555555554432 233445669999999999999887554332 2 245788876542
Q ss_pred -----hhc----cC-CchhhHHHHHHHHHhC--CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCc
Q 005014 465 -----TMW----FG-ESEANVREIFDKARQS--APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 532 (719)
Q Consensus 465 -----~~~----~g-~se~~i~~~f~~a~~~--~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 532 (719)
+.+ ++ .++......|+....+ .+-++++||+|.|..++. +++-+ |-++..+ ...+
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~-lFewp~l-p~sr 289 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYT-LFEWPKL-PNSR 289 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeee-ehhcccC-Ccce
Confidence 122 11 2233344555443332 367999999999985431 11111 1233333 3567
Q ss_pred EEEEEecCCCCCCCcccCC----CCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc--CHHHHHHHccCCCHH--HHH
Q 005014 533 VFIIGATNRPDIIDPALLR----PGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV--DLRALAKYTQGFSGA--DIT 604 (719)
Q Consensus 533 v~vi~atn~~~~ld~allr----pgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~--d~~~la~~~~~~sg~--di~ 604 (719)
+++||..|..+.-|..|.| -+--...+.|+||+.++..+||+..+...+..... -++.+|+...+.||. ..-
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL 369 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL 369 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH
Confidence 8999999998877765543 11234789999999999999999999887655433 377788888888873 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCC
Q 005014 605 EICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 661 (719)
Q Consensus 605 ~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~ 661 (719)
.+|+.|...+..+.-.. ..+....-+.......|..+|+..++.++-.
T Consensus 370 dv~R~aiEI~E~e~r~~---------~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 370 DVCRRAIEIAEIEKRKI---------LDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHHhhc---------cccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 47777777665543211 1111111111222245667777777665543
No 332
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.71 E-value=4.9e-08 Score=92.97 Aligned_cols=134 Identities=26% Similarity=0.360 Sum_probs=88.2
Q ss_pred ccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC-----------------------
Q 005014 397 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------------------- 453 (719)
Q Consensus 397 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~----------------------- 453 (719)
|++++.+.|...+.. -+.+..+||+||+|+||+++|.++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 566777777665542 244566999999999999999999988521
Q ss_pred eEEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCC
Q 005014 454 NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA 529 (719)
Q Consensus 454 ~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~ 529 (719)
.++.++..+-.. .-.-..++.+.+.+.. ...-|++|||+|.+. ....|.||..|+.-
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEep-- 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEEP-- 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHST--
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcCC--
Confidence 233333222100 0123556666665433 346799999999973 56789999999965
Q ss_pred CCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCC
Q 005014 530 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 564 (719)
Q Consensus 530 ~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p 564 (719)
..++++|.+|+.++.|-|.+++ |+- .+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 4568888999999999999998 884 7777654
No 333
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=4.9e-07 Score=97.22 Aligned_cols=158 Identities=16% Similarity=0.226 Sum_probs=104.5
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEE-----------
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF----------- 183 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i----------- 183 (719)
.+..+++|.|.+..++.|.+.+... .-+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3457889999999999998877541 22346999999999999999999998732110
Q ss_pred --EEe--ch-----------hhh--hh---ccc------chHHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCc
Q 005014 184 --CIN--GP-----------EIM--SK---LAG------ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH 233 (719)
Q Consensus 184 --~v~--~~-----------~l~--~~---~~g------~~~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~ 233 (719)
.+. |. ++. .. ..+ -.-..++.+.+.. ....+.|++|||+|.+-.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 000 10 000 00 000 0123355544432 235678999999997732
Q ss_pred hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHH
Q 005014 234 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 300 (719)
Q Consensus 234 ~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~ 300 (719)
...+.|+..++... ...++|.+|+.++.+.+.+++ |+ ..+.+++|+.++-.++|...
T Consensus 156 -----~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 156 -----NAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred -----HHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHh
Confidence 23456777777533 345666678888888888876 65 67899999999998888764
No 334
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.70 E-value=1.5e-07 Score=107.51 Aligned_cols=198 Identities=22% Similarity=0.288 Sum_probs=117.2
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 465 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~ 465 (719)
...++.+.|.....+.+.+.+... . .....+||+|++|||||++|++|...+ +.+|+.|+|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~----------a-~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV----------A-RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH----------h-CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 345677777776666665544321 1 223459999999999999999999885 46999999987632
Q ss_pred hc-----cCCchhh-------HHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----
Q 005014 466 MW-----FGESEAN-------VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 528 (719)
Q Consensus 466 ~~-----~g~se~~-------i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----- 528 (719)
.. +|..... -...|..+ ...+||||||+.+. ..+...|+..++.-.
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~--------------~~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS--------------PAFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC--------------HHHHHHHHHHHhcCcEEECC
Confidence 11 1211000 00112222 23599999999974 335566777665421
Q ss_pred C----CCcEEEEEecCCC-------CCCCcccCCCCCcc-eEEEeCCCC--HHHHHHHHHHHhccC----CCCCccCHHH
Q 005014 529 A----KKTVFIIGATNRP-------DIIDPALLRPGRLD-QLIYIPLPD--EESRLQIFKACLRKS----PVSKDVDLRA 590 (719)
Q Consensus 529 ~----~~~v~vi~atn~~-------~~ld~allrpgRf~-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~~~~d~~~ 590 (719)
+ ..++-+|+|||.. ..+.+.|.. |+. ..|.+|+.. .++...|++.++.+. +....++-+.
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1 1247788888763 123333333 443 467777664 355667777776532 2222344333
Q ss_pred HHHHc-cCC--CHHHHHHHHHHHHHHHHH
Q 005014 591 LAKYT-QGF--SGADITEICQRACKYAIR 616 (719)
Q Consensus 591 la~~~-~~~--sg~di~~~~~~A~~~a~~ 616 (719)
+.... ..| +-++|+++++.|+..+-.
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~~~ 430 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLSRS 430 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 33322 224 448999999999876543
No 335
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=2.6e-07 Score=105.09 Aligned_cols=198 Identities=13% Similarity=0.153 Sum_probs=109.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEE-Eech---
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-INGP--- 188 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~-v~~~--- 188 (719)
++.+.+++++.|.++.++.++.++.-.. ++..+++.++|+|||||||||+++.+|+.++..++. .+..
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 4567789999999999999888775321 123455679999999999999999999998765422 1111
Q ss_pred hhh----------hhc--ccchHHHHHHHHHHHHh----------cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHH
Q 005014 189 EIM----------SKL--AGESESNLRKAFEEAEK----------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT 246 (719)
Q Consensus 189 ~l~----------~~~--~g~~~~~l~~vf~~a~~----------~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~ 246 (719)
... ..+ .......++.++..+.. ....||||||++.+.... .+.+..++.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~lLr 220 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHEILR 220 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHHHHH
Confidence 000 000 01122334444544431 345799999998775321 112223333
Q ss_pred -HhhcccCCCcEEEEE-ecCCCC--------------CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCC--C---
Q 005014 247 -LMDGLKSRAHVIVIG-ATNRPN--------------SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM--K--- 305 (719)
Q Consensus 247 -~l~~~~~~~~vivI~-atn~~~--------------~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~--~--- 305 (719)
... ..+.+.+|+ +|..+. -+.++++...|. ..|.|.+.....-...|+..+... .
T Consensus 221 ~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 221 WKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 111 122333333 332221 023566642344 478999999988655555443321 1
Q ss_pred ---CCCcccHHHHHHHhCCCccccHHHHHHHH
Q 005014 306 ---LSDDVDLERIAKDTHGYVGADLAALCTEA 334 (719)
Q Consensus 306 ---l~~~~~l~~la~~t~g~~~~dl~~l~~~a 334 (719)
+.....+..++.... +|++..+...
T Consensus 297 ~~~~p~~~~l~~I~~~s~----GDiRsAIn~L 324 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCS----GDIRSAINSL 324 (637)
T ss_pred ccccCCHHHHHHHHHhCC----ChHHHHHHHH
Confidence 112234566666544 4665554433
No 336
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.6e-07 Score=95.38 Aligned_cols=83 Identities=29% Similarity=0.535 Sum_probs=60.6
Q ss_pred CcEEEEccccccCCCCCCCchHHHH-HHHHHHHHHhhccc--------CCCcEEEEEec----CCCCCCCHHhhccCCCc
Q 005014 214 PSIIFIDEIDSIAPKREKTHGEVER-RIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFD 280 (719)
Q Consensus 214 p~iL~iDEid~l~~~~~~~~~~~~~-~v~~~L~~~l~~~~--------~~~~vivI~at----n~~~~ld~al~r~~Rf~ 280 (719)
-.|+||||||.++.+.+.+..++.+ -+...|+-++++.. ...++++||+- ..|+++=|.|. |||+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 3699999999999876533323333 34456776666532 23578888754 46788888887 5999
Q ss_pred eEEEeCCCChHHHHHHHH
Q 005014 281 REIDIGVPDEVGRLEVLR 298 (719)
Q Consensus 281 ~~i~i~~P~~~~R~~il~ 298 (719)
-.+++...+.+.-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999888884
No 337
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.68 E-value=9.4e-09 Score=91.35 Aligned_cols=104 Identities=30% Similarity=0.410 Sum_probs=56.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEech-hh-----hhhcccchHH-----HHHHHHHHHHhcCCcEEEEccccc
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFCINGP-EI-----MSKLAGESES-----NLRKAFEEAEKNAPSIIFIDEIDS 224 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~-~l-----~~~~~g~~~~-----~l~~vf~~a~~~~p~iL~iDEid~ 224 (719)
||||.|+||+|||++++++|+.++..|..|.+. ++ .+...-.... .-.-+| ..++++|||+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999888763 33 2211100000 001111 24999999987
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhccc---------CCCcEEEEEecCCCC-----CCCHHhhccCCC
Q 005014 225 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRPN-----SIDPALRRFGRF 279 (719)
Q Consensus 225 l~~~~~~~~~~~~~~v~~~L~~~l~~~~---------~~~~vivI~atn~~~-----~ld~al~r~~Rf 279 (719)
..+ ++.+.|+..|.+.+ -...++||||.|+.+ .++.+++. ||
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 653 34566777775422 224688999999765 45666654 55
No 338
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.68 E-value=1.3e-07 Score=101.79 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=25.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHH
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANE 177 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~ 177 (719)
+.+.+++.+.|.|++||||||+++++++.
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcC
Confidence 45678889999999999999999999875
No 339
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.68 E-value=1.5e-07 Score=102.58 Aligned_cols=134 Identities=21% Similarity=0.260 Sum_probs=75.3
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCC--eEEEEec-----hhhhhhcccchHHHHHHHHHHHHhc---CCcEEEEcc
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETGA--FFFCING-----PEIMSKLAGESESNLRKAFEEAEKN---APSIIFIDE 221 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~~--~~i~v~~-----~~l~~~~~g~~~~~l~~vf~~a~~~---~p~iL~iDE 221 (719)
..+.+|||.||||||||++|++++...+. +|..+.+ .++++...- ....-...|.....+ ...++|+||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i-~~~~~~g~f~r~~~G~L~~A~lLfLDE 115 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSI-QALKDEGRYQRLTSGYLPEAEIVFLDE 115 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHH-hhhhhcCchhhhcCCccccccEEeecc
Confidence 45678999999999999999999997653 3333332 233221100 000001112211111 234899999
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHHhhccc--------CCCcEEEEEecCCCCC---CCHHhhccCCCceEEEeCCCCh
Q 005014 222 IDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVIGATNRPNS---IDPALRRFGRFDREIDIGVPDE 290 (719)
Q Consensus 222 id~l~~~~~~~~~~~~~~v~~~L~~~l~~~~--------~~~~vivI~atn~~~~---ld~al~r~~Rf~~~i~i~~P~~ 290 (719)
|..+. ....+.|+..|..-. .-+..++++|||+... ..+++.. ||...+.+++|+.
T Consensus 116 I~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~ 182 (498)
T PRK13531 116 IWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQD 182 (498)
T ss_pred cccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCc
Confidence 97553 234566777774321 1112344455564321 2246665 8988899999974
Q ss_pred -HHHHHHHHH
Q 005014 291 -VGRLEVLRI 299 (719)
Q Consensus 291 -~~R~~il~~ 299 (719)
++..++|..
T Consensus 183 ~~~e~~lL~~ 192 (498)
T PRK13531 183 KANFRSMLTS 192 (498)
T ss_pred hHHHHHHHHc
Confidence 555777764
No 340
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.68 E-value=7.1e-08 Score=108.35 Aligned_cols=195 Identities=19% Similarity=0.296 Sum_probs=114.5
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhh
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 466 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~ 466 (719)
..|+++.|.....+.+.+.+.. +. .....+||+|++||||+++|+++...+ +.+|+.|+|..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~----------~A-~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL----------YA-RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 4577788877766666554431 11 123469999999999999999998765 569999999766321
Q ss_pred -----ccCCch--------hhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----
Q 005014 467 -----WFGESE--------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 528 (719)
Q Consensus 467 -----~~g~se--------~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----- 528 (719)
..|..+ ..-..+|+.|.. ..||||||+.|. ..+...|+..|+.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp--------------~~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP--------------LPLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC--------------HHHHHHHHHHHhcCcEEecC
Confidence 122111 011234444433 489999999974 335566666665321
Q ss_pred CC----CcEEEEEecCCC--CCCCc-----ccCCCCCcc-eEEEeCCCCH--HHHHHHHHHHhccCCC--CCccCHHHHH
Q 005014 529 AK----KTVFIIGATNRP--DIIDP-----ALLRPGRLD-QLIYIPLPDE--ESRLQIFKACLRKSPV--SKDVDLRALA 592 (719)
Q Consensus 529 ~~----~~v~vi~atn~~--~~ld~-----allrpgRf~-~~i~~~~p~~--~~r~~Il~~~~~~~~~--~~~~d~~~la 592 (719)
+. -++-+|++||.. +.+.. .|.. |+. ..|++||.-. ++...+++.++++... ...++-+.+.
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 418 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQ 418 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 11 235788888874 22222 2322 443 4566666532 4556667777754311 1112322221
Q ss_pred H-------H-ccCCCH--HHHHHHHHHHHHHH
Q 005014 593 K-------Y-TQGFSG--ADITEICQRACKYA 614 (719)
Q Consensus 593 ~-------~-~~~~sg--~di~~~~~~A~~~a 614 (719)
. . ...|.| ++|++++.+++..+
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 1 1 234554 89999999988764
No 341
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.9e-08 Score=97.68 Aligned_cols=97 Identities=35% Similarity=0.533 Sum_probs=71.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh-hcccc-hHHHHHHHHHHHH----hcCCcEEEEccccccCC
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE-SESNLRKAFEEAE----KNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~-~~~g~-~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~ 227 (719)
..+|||.||+|||||.||+.||+.++.+|..-++..+.. .|+|+ .+.-+..+++.+. .....|++|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 357999999999999999999999999999888887764 46664 3455566666543 23457999999999997
Q ss_pred CCCCCc---hHHHHHHHHHHHHHhhc
Q 005014 228 KREKTH---GEVERRIVSQLLTLMDG 250 (719)
Q Consensus 228 ~~~~~~---~~~~~~v~~~L~~~l~~ 250 (719)
+.++++ +--..-+...|+..+++
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcC
Confidence 764332 11123456678888876
No 342
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.66 E-value=2.1e-06 Score=96.59 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=54.6
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhc------cC----------------------Cc
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW------FG----------------------ES 471 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~------~g----------------------~s 471 (719)
|+.+...+|+.||||+|||+|+..++... +-+.++++..+-...+ +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 66667779999999999999999888764 4455666554332110 01 01
Q ss_pred hhhHHHHHHHHHhCCCEEEEEeccchhhc
Q 005014 472 EANVREIFDKARQSAPCVLFFDELDSIAT 500 (719)
Q Consensus 472 e~~i~~~f~~a~~~~p~il~iDEid~l~~ 500 (719)
+..+..+.+......|.+++||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 44566777778888899999999988753
No 343
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.66 E-value=2e-07 Score=89.91 Aligned_cols=134 Identities=19% Similarity=0.305 Sum_probs=83.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh-CC----eEEEEec
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GA----FFFCING 187 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l-~~----~~i~v~~ 187 (719)
+..+..+.||+|-++.++.+.-+..- ..-.+++|.|||||||||-+.++|.++ |. -++.+|+
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 45566788999999999888765542 122379999999999999999999986 32 2355665
Q ss_pred hhhhhhcccchHHHHHHHHHHHHhc----CCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEec
Q 005014 188 PEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 263 (719)
Q Consensus 188 ~~l~~~~~g~~~~~l~~vf~~a~~~----~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~at 263 (719)
++-.+ ......+++. |.+-+-. .-.|+++||+|.+-.. ....|...|+-+....++.+ +|
T Consensus 87 SdeRG--IDvVRn~IK~-FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttRFal--aC 150 (333)
T KOG0991|consen 87 SDERG--IDVVRNKIKM-FAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTRFAL--AC 150 (333)
T ss_pred ccccc--cHHHHHHHHH-HHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccchhhh--hh
Confidence 54322 1112233333 3332222 2258999999987421 22456666766665555544 66
Q ss_pred CCCCCCCHHhhc
Q 005014 264 NRPNSIDPALRR 275 (719)
Q Consensus 264 n~~~~ld~al~r 275 (719)
|..+.+-+.+.+
T Consensus 151 N~s~KIiEPIQS 162 (333)
T KOG0991|consen 151 NQSEKIIEPIQS 162 (333)
T ss_pred cchhhhhhhHHh
Confidence 766666444443
No 344
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.66 E-value=1.3e-07 Score=102.54 Aligned_cols=197 Identities=24% Similarity=0.354 Sum_probs=118.3
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchh-
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL- 464 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~- 464 (719)
..+|++|.|-......+.+.... .......+||.|.+||||..+|+++-+.+ +.|||.+||..+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 45688888776655554443321 22345669999999999999999999887 5799999996542
Q ss_pred ------------hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcC-----C
Q 005014 465 ------------TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----M 527 (719)
Q Consensus 465 ------------~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~ 527 (719)
+.|.|....--.-+|+.|... -||+|||..+. ..+...||..|.. +
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp--------------l~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP--------------LPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC--------------HHHHHHHHHHHhhceEEec
Confidence 233444333234577777655 89999998763 3456667766654 2
Q ss_pred CC----CCcEEEEEecCCCCCCCcccCCCCCcce-------EEEeCCCCHHHH----HHHHHHHhc----cCCCC-CccC
Q 005014 528 SA----KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESR----LQIFKACLR----KSPVS-KDVD 587 (719)
Q Consensus 528 ~~----~~~v~vi~atn~~~~ld~allrpgRf~~-------~i~~~~p~~~~r----~~Il~~~~~----~~~~~-~~~d 587 (719)
.+ .-.|-||+|||+. +-.++- -|||-. ++.+..|...+| ..+...++. +.+.. ..+.
T Consensus 373 G~t~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 22 2358999999983 211221 234332 334444444333 334444443 33222 2233
Q ss_pred HHHHHHH-ccCCCH--HHHHHHHHHHHHHHHH
Q 005014 588 LRALAKY-TQGFSG--ADITEICQRACKYAIR 616 (719)
Q Consensus 588 ~~~la~~-~~~~sg--~di~~~~~~A~~~a~~ 616 (719)
-+.++.. ...|.| ++|+|++.+|...+-.
T Consensus 450 ~~a~~~L~~y~WPGNVRELeNviER~v~~~~~ 481 (560)
T COG3829 450 PDALALLLRYDWPGNVRELENVIERAVNLVES 481 (560)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhccCC
Confidence 3344332 233655 9999999999874433
No 345
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.66 E-value=4e-08 Score=95.35 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=35.1
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 119 ~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
|.+|.|++..+..+.-...- +.++||+||||||||++|+.+...+.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 78899999988877644432 35899999999999999999988764
No 346
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.65 E-value=1.4e-06 Score=89.41 Aligned_cols=63 Identities=37% Similarity=0.647 Sum_probs=43.4
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeEEEEechhh
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEI 190 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~--~~~i~v~~~~l 190 (719)
+.++|+.++-+..--++.+ .+ -|-..+++||+.||||||||.||-.+|+++| .+|+.++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~m-ik-------~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKM-IK-------QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHH-HH-------hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 3467777665553322222 11 1345688999999999999999999999997 46666665544
No 347
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.65 E-value=4.1e-07 Score=101.00 Aligned_cols=143 Identities=27% Similarity=0.377 Sum_probs=88.1
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--EEEEeccchhh---
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLT--- 465 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~--~i~v~~~~l~~--- 465 (719)
.+.++.|...+++.+.-. ......++|+||||||||++++.+++.+... -..+....+.+
T Consensus 189 d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 455666776666554321 1233569999999999999999999875211 01111111110
Q ss_pred -----------------------hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHH
Q 005014 466 -----------------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 522 (719)
Q Consensus 466 -----------------------~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~ 522 (719)
..+|.....-.-.+..|.. .++|+||++.+ ...+++.|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~--------------~~~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF--------------ERRTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC--------------CHHHHHHHHH
Confidence 0122111111124455544 49999999775 2456777777
Q ss_pred HhcCCC-----------CCCcEEEEEecCCCC---------------------CCCcccCCCCCcceEEEeCCCCHH
Q 005014 523 EMDGMS-----------AKKTVFIIGATNRPD---------------------IIDPALLRPGRLDQLIYIPLPDEE 567 (719)
Q Consensus 523 ~ld~~~-----------~~~~v~vi~atn~~~---------------------~ld~allrpgRf~~~i~~~~p~~~ 567 (719)
.|+.-. -..++.+|+|+|... .|..+++. |||.++.+++|+.+
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 774421 124689999999742 47778998 99999999988654
No 348
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.64 E-value=1.3e-07 Score=106.03 Aligned_cols=195 Identities=22% Similarity=0.318 Sum_probs=112.0
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHH-----------hCCeEEEE
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-----------CQANFISV 458 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~-----------~~~~~i~v 458 (719)
..++++.|.....+.+.+.+.. +. .....+||+|++||||+++|+++-.. .+.+|+.|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~----------~A-~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL----------YA-RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 3467788877766666554431 11 12346999999999999999999887 35699999
Q ss_pred eccchhhh-----ccCCchh--------hHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhc
Q 005014 459 KGPELLTM-----WFGESEA--------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 525 (719)
Q Consensus 459 ~~~~l~~~-----~~g~se~--------~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld 525 (719)
+|..+... ..|..+. .-..+|+.|.. ..||||||+.+. ..+...|+..|+
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp--------------~~~Q~kLl~~L~ 347 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP--------------LPLQTRLLRVLE 347 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC--------------HHHHHHHHhhhh
Confidence 99876321 1221110 11124555533 489999999974 335566666665
Q ss_pred CCC-----C----CCcEEEEEecCCCC--CCC-----cccCCCCCcc-eEEEeCCCCH--HHHHHHHHHHhccC--CCCC
Q 005014 526 GMS-----A----KKTVFIIGATNRPD--IID-----PALLRPGRLD-QLIYIPLPDE--ESRLQIFKACLRKS--PVSK 584 (719)
Q Consensus 526 ~~~-----~----~~~v~vi~atn~~~--~ld-----~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~~~~~--~~~~ 584 (719)
.-. + .-++-||++||..- .+. +.|.. |+. ..|++||... ++...+++.++++. ....
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 421 1 12467899998741 122 22222 332 3445555432 44556677777542 1111
Q ss_pred ccCHHHH-------HH-HccCCCH--HHHHHHHHHHHHHH
Q 005014 585 DVDLRAL-------AK-YTQGFSG--ADITEICQRACKYA 614 (719)
Q Consensus 585 ~~d~~~l-------a~-~~~~~sg--~di~~~~~~A~~~a 614 (719)
.+.-+.+ .. ....|.| ++|++++.+++..+
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 1222111 11 1223544 99999999988753
No 349
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=2.4e-07 Score=97.50 Aligned_cols=129 Identities=19% Similarity=0.312 Sum_probs=92.8
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCC------------------------eEEEEeccchhhhccCCchhhHHHHHH
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 480 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~~f~ 480 (719)
+.+.++||+||+|+||+++|+++|..+-+ .++.+...+ ++.+ .-..+|.+-+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 34567999999999999999999987532 122232110 1111 2345565544
Q ss_pred HH----HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcc
Q 005014 481 KA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 556 (719)
Q Consensus 481 ~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~ 556 (719)
.+ ......|++||++|.+. ....|.||+.|+. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ 159 (325)
T ss_pred HHhhccccCCceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce
Confidence 43 33445799999999973 3467999999986 45667888899999999999988 885
Q ss_pred eEEEeCCCCHHHHHHHHHHH
Q 005014 557 QLIYIPLPDEESRLQIFKAC 576 (719)
Q Consensus 557 ~~i~~~~p~~~~r~~Il~~~ 576 (719)
.+.|++|+.++..+.+...
T Consensus 160 -~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 -TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -EEeCCCCCHHHHHHHHHHH
Confidence 8899999998887777654
No 350
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.62 E-value=9.6e-07 Score=88.19 Aligned_cols=98 Identities=23% Similarity=0.218 Sum_probs=68.8
Q ss_pred EEEEecCC------------CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHccCCCH
Q 005014 534 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQGFSG 600 (719)
Q Consensus 534 ~vi~atn~------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-~~~la~~~~~~sg 600 (719)
++|++||+ |+-|+-.|+. |+ .+|...|++.++...||+..+....+.-+.| ++.|......-|-
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 67778886 4556666665 65 4777888999999999999998765543333 4445555554555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhc
Q 005014 601 ADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 659 (719)
Q Consensus 601 ~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~ 659 (719)
+.--+++..|.+.+.++. ...+..+|++.++.-.
T Consensus 396 RYai~Lit~a~~~~~krk-------------------------~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRK-------------------------GKVVEVDDIERVYRLF 429 (454)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------------CceeehhHHHHHHHHH
Confidence 666678888888777764 2367888899988753
No 351
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=6.5e-07 Score=94.94 Aligned_cols=147 Identities=18% Similarity=0.288 Sum_probs=95.8
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCe------------------------EEEEechhhhhhcccchHHHHHHHHHHH
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 209 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 209 (719)
+..+||+||+|+|||++|+.+|+.+.+. ++.+....- ++ .-.-..++.+.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHHH
Confidence 4569999999999999999999987542 122211000 00 01234556555443
Q ss_pred H----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEe
Q 005014 210 E----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 285 (719)
Q Consensus 210 ~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i 285 (719)
. .....|++||++|.+-. ...+.|++.++.-. .++++|.+|+.++.+.|.+++ |+ ..+.+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC-QQQAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc-eeeeC
Confidence 3 24456899999998853 23467888887643 467777888999999999998 77 45899
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCC
Q 005014 286 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGY 322 (719)
Q Consensus 286 ~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~ 322 (719)
++|+.++-.+.|...... ..+.....++...+|-
T Consensus 163 ~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 163 PLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred CCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 999999888777654311 1222334455555553
No 352
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.61 E-value=6e-07 Score=91.90 Aligned_cols=177 Identities=16% Similarity=0.271 Sum_probs=106.0
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---------CCeEEEEeccchh---hhc----------c--CCc-hhhHHHHHHH
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELL---TMW----------F--GES-EANVREIFDK 481 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---------~~~~i~v~~~~l~---~~~----------~--g~s-e~~i~~~f~~ 481 (719)
..++||+|++|.|||++++.++... ..+++.+.++.-- .-| . ..+ .+.-..+...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999764 2466777654221 111 0 111 1222334455
Q ss_pred HHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCc--EEEEEecCCCC--CCCcccCCCCCcce
Q 005014 482 ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT--VFIIGATNRPD--IIDPALLRPGRLDQ 557 (719)
Q Consensus 482 a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~--v~vi~atn~~~--~ld~allrpgRf~~ 557 (719)
.+...+-+|+|||++.++.-+ .+-..++|+.+..+.+.-+ ++.+||-.-.. .-|+.+-+ ||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs-----------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~- 206 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGS-----------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE- 206 (302)
T ss_pred HHHcCCcEEEeechHHHhccc-----------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-
Confidence 566777899999999976421 1112334444444433333 44444432222 34777777 997
Q ss_pred EEEeCCC-CHHHHHHHHHHHhccCCCC--CccCHHH----HHHHccCCCHHHHHHHHHHHHHHHHHHH
Q 005014 558 LIYIPLP-DEESRLQIFKACLRKSPVS--KDVDLRA----LAKYTQGFSGADITEICQRACKYAIREN 618 (719)
Q Consensus 558 ~i~~~~p-~~~~r~~Il~~~~~~~~~~--~~~d~~~----la~~~~~~sg~di~~~~~~A~~~a~~~~ 618 (719)
.+.+|.- .-++...++..+-+..|+. ++..-.. |-..++|..| ++..+++.|+..|++.+
T Consensus 207 ~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 207 PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcC
Confidence 5555643 2344566777777666654 3333334 4456777664 67889999999999876
No 353
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.61 E-value=2.2e-07 Score=107.50 Aligned_cols=154 Identities=22% Similarity=0.347 Sum_probs=95.3
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC------------------
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------------------ 179 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~------------------ 179 (719)
.|.+|.|.+..+..+.-....| ...+|||.|++|||||++|++|+..+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4778999988776654333221 113699999999999999999999883
Q ss_pred -----------------CeEEEEechhhhhhcccchHHHHHHHHHH---------HHhcCCcEEEEccccccCCCCCCCc
Q 005014 180 -----------------AFFFCINGPEIMSKLAGESESNLRKAFEE---------AEKNAPSIIFIDEIDSIAPKREKTH 233 (719)
Q Consensus 180 -----------------~~~i~v~~~~l~~~~~g~~~~~l~~vf~~---------a~~~~p~iL~iDEid~l~~~~~~~~ 233 (719)
.+|+.+.+........|... +...++. .......+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------ 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------
Confidence 34444433322222222110 1111110 0011235999999998853
Q ss_pred hHHHHHHHHHHHHHhhcc-----------cCCCcEEEEEecCCC-CCCCHHhhccCCCceEEEeCCCC-hHHHHHHHHH
Q 005014 234 GEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRP-NSIDPALRRFGRFDREIDIGVPD-EVGRLEVLRI 299 (719)
Q Consensus 234 ~~~~~~v~~~L~~~l~~~-----------~~~~~vivI~atn~~-~~ld~al~r~~Rf~~~i~i~~P~-~~~R~~il~~ 299 (719)
.+...|+..|+.- ....++.+|+++|+. ..+.++|.. ||...+.++.|. .+++.++++.
T Consensus 141 -----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 -----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred -----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 2445666666532 112468889988854 357788887 999888888775 4667777764
No 354
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.60 E-value=4.1e-07 Score=97.31 Aligned_cols=124 Identities=27% Similarity=0.390 Sum_probs=83.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHhC------------------------CeEEEEechhhhhhcccchHHHHHHHHHHHHh
Q 005014 156 GILLYGPPGSGKTLIARAVANETG------------------------AFFFCINGPEIMSKLAGESESNLRKAFEEAEK 211 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~------------------------~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~ 211 (719)
.+||+||||+|||++|.++|+.+. ..++.++.++..... .....++.+.+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 499999999999999999999986 356666665543221 123445554444322
Q ss_pred ----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCC
Q 005014 212 ----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 287 (719)
Q Consensus 212 ----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~ 287 (719)
...-+++|||+|.+-. ...+.++..+.... .+..+|.+||.++.+-+.+++ |. ..+.|++
T Consensus 104 ~~~~~~~kviiidead~mt~-----------~A~nallk~lEep~--~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~ 167 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEPP--KNTRFILITNDPSKILPTIRS--RC-QRIRFKP 167 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccCC--CCeEEEEEcCChhhccchhhh--cc-eeeecCC
Confidence 2356999999998854 23456677776544 355666678899999888887 65 5577777
Q ss_pred CChHHHHHHH
Q 005014 288 PDEVGRLEVL 297 (719)
Q Consensus 288 P~~~~R~~il 297 (719)
|....+...+
T Consensus 168 ~~~~~~i~~~ 177 (325)
T COG0470 168 PSRLEAIAWL 177 (325)
T ss_pred chHHHHHHHh
Confidence 5555444433
No 355
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.59 E-value=3.9e-07 Score=103.22 Aligned_cols=195 Identities=22% Similarity=0.283 Sum_probs=113.4
Q ss_pred cccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhh--
Q 005014 392 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-- 466 (719)
Q Consensus 392 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~-- 466 (719)
..++.|.....+.+.+.+.. .. .....+||+|++||||+++|+++...+ +.+|+.|+|..+-..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~----------~a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEV----------VA-ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 34556665555555544332 11 224469999999999999999999875 468999999876321
Q ss_pred ---ccCCchh-------hHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----C--
Q 005014 467 ---WFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A-- 529 (719)
Q Consensus 467 ---~~g~se~-------~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~-- 529 (719)
.+|.... .....|..|. ...||||||+.+. ..+...|+..++.-. +
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP--------------LALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC--------------HHHHHHHHHHHhcCCEeeCCCCc
Confidence 1221100 0011344443 3589999999984 345566666665321 1
Q ss_pred --CCcEEEEEecCCCC-------CCCcccCCCCCcc-eEEEeCCCCH--HHHHHHHHHHhccC----CC-CCccCHHHHH
Q 005014 530 --KKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPDE--ESRLQIFKACLRKS----PV-SKDVDLRALA 592 (719)
Q Consensus 530 --~~~v~vi~atn~~~-------~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~-~~~~d~~~la 592 (719)
..++-||++||+.- .+.+.|.. |+. ..|++|+... ++...++++++++. +. ...++-+.+.
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 12578899998741 23344443 443 3456665532 34555666665432 11 1234444333
Q ss_pred HHc-cCCC--HHHHHHHHHHHHHHHHH
Q 005014 593 KYT-QGFS--GADITEICQRACKYAIR 616 (719)
Q Consensus 593 ~~~-~~~s--g~di~~~~~~A~~~a~~ 616 (719)
... ..|. -++|++++.+|+..+..
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 322 2354 49999999999887754
No 356
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.59 E-value=2.4e-07 Score=108.23 Aligned_cols=194 Identities=21% Similarity=0.243 Sum_probs=108.7
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchh---
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL--- 464 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~--- 464 (719)
.|+++.|.....+.+.+.+.. .. .....+||+|++||||+++|+++...+ +.+|+.|+|..+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~----------~a-~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQ----------AA-KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHH----------Hh-CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 466666665544444333221 11 223459999999999999999999875 4699999997652
Q ss_pred --hhccCCc----hhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----CC---
Q 005014 465 --TMWFGES----EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----AK--- 530 (719)
Q Consensus 465 --~~~~g~s----e~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~~--- 530 (719)
+..+|.. .......|+.| ....||||||+.+. ..+...|+..++.-. +.
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~--------------~~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS--------------PELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCceE
Confidence 2223311 11011123333 24599999999974 234566666665321 11
Q ss_pred -CcEEEEEecCCCC-------CCCcccCCCCCc-ceEEEeCCCCH--HHHHHHHHHHhccC----CCCCccCHHHHHHHc
Q 005014 531 -KTVFIIGATNRPD-------IIDPALLRPGRL-DQLIYIPLPDE--ESRLQIFKACLRKS----PVSKDVDLRALAKYT 595 (719)
Q Consensus 531 -~~v~vi~atn~~~-------~ld~allrpgRf-~~~i~~~~p~~--~~r~~Il~~~~~~~----~~~~~~d~~~la~~~ 595 (719)
-++-||+|||..- .+.+.|.- |+ ...|.+|+.-. ++...+++.++++. .....+.-+.+....
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~ 532 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 1577899998741 12222222 33 24455555432 34555666666432 111223433333332
Q ss_pred -cCC--CHHHHHHHHHHHHHHH
Q 005014 596 -QGF--SGADITEICQRACKYA 614 (719)
Q Consensus 596 -~~~--sg~di~~~~~~A~~~a 614 (719)
..| +-++|+++++.|+..+
T Consensus 533 ~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 533 SYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred cCCCCChHHHHHHHHHHHHHhC
Confidence 234 4589999999988765
No 357
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.59 E-value=7.6e-07 Score=104.72 Aligned_cols=245 Identities=20% Similarity=0.250 Sum_probs=130.2
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh-
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT- 465 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~- 465 (719)
..++++.|.....+.+.+.+... ......+||+|++|||||++|+++...+ +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 34667777776666665544321 1123469999999999999999998865 56999999976532
Q ss_pred ----hccCC--------chhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----
Q 005014 466 ----MWFGE--------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 528 (719)
Q Consensus 466 ----~~~g~--------se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----- 528 (719)
..+|. ..... ..|..|. ..+||||||+.+. ..+...|+..++...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a~---~GtL~Ldei~~L~--------------~~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELAD---KSSLFLDEVGDMP--------------LELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhcC---CCeEEEechhhCC--------------HHHHHHHHHHHHhCCEEeCC
Confidence 12221 11122 2344443 3599999999973 345566666665421
Q ss_pred C----CCcEEEEEecCCCC--CCCcccCCCC---Ccc-eEEEeCCCCH--HHHHHHHHHHhccC----CCC-CccCHHHH
Q 005014 529 A----KKTVFIIGATNRPD--IIDPALLRPG---RLD-QLIYIPLPDE--ESRLQIFKACLRKS----PVS-KDVDLRAL 591 (719)
Q Consensus 529 ~----~~~v~vi~atn~~~--~ld~allrpg---Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~-~~~d~~~l 591 (719)
+ ..++-+|++||..- .+....+|+. |+. ..|.+|+... ++...+++.++.+. +.. ..+.-+.+
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 1 23578899998741 2222222210 333 2455555422 34445666665432 211 12333333
Q ss_pred HHH-ccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCC
Q 005014 592 AKY-TQGFS--GADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVS 664 (719)
Q Consensus 592 a~~-~~~~s--g~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~ 664 (719)
... ...|. -++|++++++|+..+-...+........ ..................+..+-+..||+.....++
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~Er~~I~~aL~~~~gn~~ 658 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIT-LPEPETPPAATVVAQEGEDEYQLIVRVLKETNGVVA 658 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhCCCCcccccCchhh-cccccccccccccccHHHHHHHHHHHHHHHcCCCcc
Confidence 322 12354 4999999999988654333322100000 000000000000001123556678888888887775
No 358
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=6e-07 Score=94.35 Aligned_cols=153 Identities=23% Similarity=0.263 Sum_probs=99.3
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCCe---------------------EEEEe-ccchhhh-c-cCCchhhHHHHHH
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQAN---------------------FISVK-GPELLTM-W-FGESEANVREIFD 480 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~~---------------------~i~v~-~~~l~~~-~-~g~se~~i~~~f~ 480 (719)
+.+..+||+||+|+||+++|.++|..+-+. +..+. .++-.+. . ..-.-..||.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 345679999999999999999999875221 22221 0100000 0 0001334666665
Q ss_pred HHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcc
Q 005014 481 KARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 556 (719)
Q Consensus 481 ~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~ 556 (719)
.+.. ....|++||++|.+. ....|.||+.|+.- ..++++|.+|+.++.|-|.+++ |+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEEP--p~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEEP--SPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhCC--CCCCeEEEEECChhhCchHHHh--hhe
Confidence 5433 234699999999983 34578999999864 4567788888889999999998 995
Q ss_pred eEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHH
Q 005014 557 QLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGA 601 (719)
Q Consensus 557 ~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~ 601 (719)
.+.|++|+.++....+... +.+ ..+...++..+.|-.+.
T Consensus 166 -~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGL 204 (319)
T ss_pred -EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHH
Confidence 8899999998877777542 222 12234556666654443
No 359
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.57 E-value=3.7e-06 Score=87.35 Aligned_cols=171 Identities=18% Similarity=0.297 Sum_probs=94.8
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCC-eEE--E-Eec----hhh----hhhc----ccch-HH---HHHHHH-HHHHhcCC
Q 005014 156 GILLYGPPGSGKTLIARAVANETGA-FFF--C-ING----PEI----MSKL----AGES-ES---NLRKAF-EEAEKNAP 214 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~-~~i--~-v~~----~~l----~~~~----~g~~-~~---~l~~vf-~~a~~~~p 214 (719)
.++|+||+|+||||+++.+++.+.. .+. . +++ .++ ...+ .+.. .. .+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999998762 221 1 111 111 1111 0110 11 122212 22334567
Q ss_pred cEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-CCCcEEEEEecCCCC---CC-C---HHhhccCCCceEEEeC
Q 005014 215 SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPN---SI-D---PALRRFGRFDREIDIG 286 (719)
Q Consensus 215 ~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-~~~~vivI~atn~~~---~l-d---~al~r~~Rf~~~i~i~ 286 (719)
.+++|||++.+... ....+..+.+... ....+.|+.+. .++ .+ + ..+.+ |+...+.++
T Consensus 125 ~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 125 ALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred eEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEEcC-CHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 89999999977421 1222222222111 12222222222 221 11 1 12333 777788999
Q ss_pred CCChHHHHHHHHHHhcCCC-----CCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHh
Q 005014 287 VPDEVGRLEVLRIHTKNMK-----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 341 (719)
Q Consensus 287 ~P~~~~R~~il~~~~~~~~-----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 341 (719)
+.+.++..+++...+.... ......+..+.+.+.|+.. .+..+|..+...+...
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc
Confidence 9999998888876654322 1233457888899999854 4888888776665543
No 360
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=4e-07 Score=96.80 Aligned_cols=129 Identities=20% Similarity=0.287 Sum_probs=91.9
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCC------------------------eEEEEeccchhhhccCCchhhHHHHHH
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 480 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~~f~ 480 (719)
+.+..+||+||+|+||+++|.++|..+-+ .+..+....- ... -+-..||.+-+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS--LGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc--CCHHHHHHHHH
Confidence 44567999999999999999999987622 1222221100 000 11234555444
Q ss_pred H----HHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcc
Q 005014 481 K----ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 556 (719)
Q Consensus 481 ~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~ 556 (719)
. +......|++||++|.+- ...-|.||+.|+. +..+.++|.+|+.++.|-|.+++ |+.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 3 444556799999999973 3467999999996 45678888999999999999998 887
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 005014 557 QLIYIPLPDEESRLQIFKA 575 (719)
Q Consensus 557 ~~i~~~~p~~~~r~~Il~~ 575 (719)
.+.|++|+.++....+..
T Consensus 161 -~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred -cccCCCCCHHHHHHHHHH
Confidence 689999998887776654
No 361
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.56 E-value=5.1e-07 Score=103.13 Aligned_cols=53 Identities=30% Similarity=0.523 Sum_probs=44.0
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 452 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~ 452 (719)
..+|+..|+++.|++++++.|...+.. .++++|+||||||||+++++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456778999999999999888765532 23699999999999999999998764
No 362
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.55 E-value=5.3e-07 Score=102.17 Aligned_cols=198 Identities=19% Similarity=0.289 Sum_probs=112.5
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 465 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~ 465 (719)
...|+++.|.....+.+.+.+. ++. .....++|+|++||||+++|+++...+ +.+|+.++|+.+-.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~----------~~A-~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQAR----------KLA-MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHH----------HHh-CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 3456677776654444433322 111 123459999999999999999987654 46899999987632
Q ss_pred h-----ccCCch-------hhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----
Q 005014 466 M-----WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 528 (719)
Q Consensus 466 ~-----~~g~se-------~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----- 528 (719)
. .+|... ..-..+|+.|. ...||||||+.+.. .+...|+..++.-.
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSP--------------RMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCH--------------HHHHHHHHHHhcCCcccCC
Confidence 1 122111 01112454443 34899999999743 34456666664421
Q ss_pred C----CCcEEEEEecCCC--C-----CCCcccCCCCCcc-eEEEeCCCCH--HHHHHHHHHHhcc----CCCC-CccCHH
Q 005014 529 A----KKTVFIIGATNRP--D-----IIDPALLRPGRLD-QLIYIPLPDE--ESRLQIFKACLRK----SPVS-KDVDLR 589 (719)
Q Consensus 529 ~----~~~v~vi~atn~~--~-----~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~-~~~d~~ 589 (719)
+ ..++-||+||+.+ + .+.+.|.. |+. ..|.+|+... +.+..+++.++++ .+.. ..+.-+
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 1 1256788888764 1 23444554 654 4455555532 3344555555532 2221 234444
Q ss_pred HHHHHc-cCCCH--HHHHHHHHHHHHHHHH
Q 005014 590 ALAKYT-QGFSG--ADITEICQRACKYAIR 616 (719)
Q Consensus 590 ~la~~~-~~~sg--~di~~~~~~A~~~a~~ 616 (719)
.+.... ..|.| ++|++++..|+..+-.
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~~~ 439 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQLEG 439 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhCCC
Confidence 444432 23544 8999999998876543
No 363
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.55 E-value=3.5e-07 Score=87.42 Aligned_cols=97 Identities=31% Similarity=0.509 Sum_probs=65.6
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhh-----ccCCch-------hhHHHHHHHHHhCCCEEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLFF 492 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~-----~~g~se-------~~i~~~f~~a~~~~p~il~i 492 (719)
..+||+|++||||+.+|++|-..+ +.+|+.|+|+.+... .+|... ..-.-+|+.|... +|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEee
Confidence 569999999999999999999876 469999999876422 222211 1122577777665 9999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC-----CCC----CcEEEEEecCC
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SAK----KTVFIIGATNR 541 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~~----~~v~vi~atn~ 541 (719)
|||+.|. ..+...|+..|+.- .+. -++-||++||.
T Consensus 100 d~I~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLP--------------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS---------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhhH--------------HHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 9999984 34566677776632 111 26889999996
No 364
>PRK04132 replication factor C small subunit; Provisional
Probab=98.54 E-value=1.1e-06 Score=102.59 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=107.1
Q ss_pred CCceEEEEC--CCCCChHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcC------CcEEEE
Q 005014 153 PPKGILLYG--PPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA------PSIIFI 219 (719)
Q Consensus 153 ~~~~vLL~G--ppGtGKTtla~~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~------p~iL~i 219 (719)
|+-+-+..| |++.||||+|+++|+++ +..++.+|+++..+ -..++.+...+.... ..|++|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444567779 99999999999999997 45789999987432 234555555443222 359999
Q ss_pred ccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHH
Q 005014 220 DEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 299 (719)
Q Consensus 220 DEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~ 299 (719)
||+|.+-.. ..+.|+..|+... .++.+|.+||++..+.+++++ |+ ..+.|++|+.++-...|+.
T Consensus 637 DEaD~Lt~~-----------AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 637 DEADALTQD-----------AQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ECcccCCHH-----------HHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 999998521 2456778887643 366778889999999999987 76 7789999998888877776
Q ss_pred HhcCCCCC-CcccHHHHHHHhCCCcc
Q 005014 300 HTKNMKLS-DDVDLERIAKDTHGYVG 324 (719)
Q Consensus 300 ~~~~~~l~-~~~~l~~la~~t~g~~~ 324 (719)
.+....+. ++..+..++..+.|-..
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEGDMR 726 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCHH
Confidence 65433222 33457788888776443
No 365
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1.8e-06 Score=91.11 Aligned_cols=176 Identities=14% Similarity=0.180 Sum_probs=112.8
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe----------------
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 181 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~---------------- 181 (719)
.|++|.|.+..++.+.+.+... .-+..+||+||+|+||+++|.++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999998887641 223579999999999999999999886321
Q ss_pred --EEEEechhhh-hh--------ccc--------chHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHH
Q 005014 182 --FFCINGPEIM-SK--------LAG--------ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVER 238 (719)
Q Consensus 182 --~i~v~~~~l~-~~--------~~g--------~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~ 238 (719)
++.+...... ++ ..| -.-..++.+.+.+. .....|++||++|.+-.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 1222111000 00 000 01124455544432 23457999999988742
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 005014 239 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKD 318 (719)
Q Consensus 239 ~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~ 318 (719)
...+.|+..++... . .++|..|+.++.+-|.+++ |. ..+.++.|+.++-.++|......- ..+.+...++..
T Consensus 139 ~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc--cchhHHHHHHHH
Confidence 23467888887754 3 3455566788999999998 66 778999999999988887653211 111123566666
Q ss_pred hCCCcc
Q 005014 319 THGYVG 324 (719)
Q Consensus 319 t~g~~~ 324 (719)
..|-.+
T Consensus 211 a~Gs~~ 216 (314)
T PRK07399 211 AQGSPG 216 (314)
T ss_pred cCCCHH
Confidence 665443
No 366
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.54 E-value=6.3e-07 Score=97.38 Aligned_cols=243 Identities=21% Similarity=0.291 Sum_probs=138.9
Q ss_pred cccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhh--
Q 005014 392 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-- 466 (719)
Q Consensus 392 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~-- 466 (719)
+.++.|.....+.+.+.+.. + ......+|++|++||||-.+|++|-..+ +.||+.|||..+-..
T Consensus 140 ~~~liG~S~am~~l~~~i~k----------v-A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAK----------V-APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred cCCceecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 44566666666666554432 1 1223459999999999999999999887 459999999765321
Q ss_pred ---ccC--------CchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcC-----CCCC
Q 005014 467 ---WFG--------ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----MSAK 530 (719)
Q Consensus 467 ---~~g--------~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~~~ 530 (719)
.+| ...+. .-.|+.|... .||+|||..+. ..+...||..+.. +.+.
T Consensus 209 ESELFGhekGAFTGA~~~r-~G~fE~A~GG---TLfLDEI~~mp--------------l~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 209 ESELFGHEKGAFTGAITRR-IGRFEQANGG---TLFLDEIGEMP--------------LELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHhhcccccCcCCccccc-CcceeEcCCc---eEEeeccccCC--------------HHHHHHHHHHHHcCeeEecCCC
Confidence 122 11111 1255555444 99999998863 3455666666553 2222
Q ss_pred ----CcEEEEEecCCC--CC-----CCcccCCCCCcceEEEeCCCCHHH----HHHHHHHHhcc----CCC-CCccCHHH
Q 005014 531 ----KTVFIIGATNRP--DI-----IDPALLRPGRLDQLIYIPLPDEES----RLQIFKACLRK----SPV-SKDVDLRA 590 (719)
Q Consensus 531 ----~~v~vi~atn~~--~~-----ld~allrpgRf~~~i~~~~p~~~~----r~~Il~~~~~~----~~~-~~~~d~~~ 590 (719)
-+|-||+|||+. +. +-+.|.- |+. ++.+..|...+ .-.++++++++ .+. ...++-+.
T Consensus 271 ~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a 347 (464)
T COG2204 271 KPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEA 347 (464)
T ss_pred cccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 258899999973 22 2223333 443 44555554444 44566666644 222 24455566
Q ss_pred HHHHc-cCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcC---CCccccc------ccccccccccHHHHHHHHh
Q 005014 591 LAKYT-QGFSG--ADITEICQRACKYAIRENIEKDIERER-RRSE---NPEAMEE------DVEDEVAEIKAVHFEESMK 657 (719)
Q Consensus 591 la~~~-~~~sg--~di~~~~~~A~~~a~~~~~~~~~~~~~-~~~~---~~~~~~~------~~~~~~~~v~~~~~~~a~~ 657 (719)
++... ..|.| ++|+|++.+++..+-...+........ .... ....... ...+....+..+-+..||.
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I~~aL~ 427 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILSEGPEIEVEDLPLEILAPAAEALAGPAGEAALPGLPLGEALAEVERQLILQALE 427 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcCCccccchhhccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 65543 45666 999999999999886655443221100 0000 0000000 0011234556666777888
Q ss_pred hcCCCCCHH
Q 005014 658 YARRSVSDA 666 (719)
Q Consensus 658 ~~~~sv~~~ 666 (719)
.....+++.
T Consensus 428 ~~~g~~~~a 436 (464)
T COG2204 428 RTGGNKSEA 436 (464)
T ss_pred HhCCCHHHH
Confidence 888877754
No 367
>PRK08116 hypothetical protein; Validated
Probab=98.54 E-value=5.3e-07 Score=93.09 Aligned_cols=123 Identities=16% Similarity=0.328 Sum_probs=71.1
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccc----hHHHHHHHHHHHHhcCCcEEEEccccccC
Q 005014 154 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~----~~~~l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
+.+++|+|++|||||+|+.++++.+ +..++.++..++....... .......+++.. ....+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4579999999999999999999986 6778888887766543211 111122333332 234599999986421
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecC-CCCCC----CHHhhccCCC---ceEEEeCCCCh
Q 005014 227 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN-RPNSI----DPALRRFGRF---DREIDIGVPDE 290 (719)
Q Consensus 227 ~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn-~~~~l----d~al~r~~Rf---~~~i~i~~P~~ 290 (719)
. . .....+|..+++........+|| ||| .++.+ +..+.+ |+ ...|.+.-++.
T Consensus 192 ~------t---~~~~~~l~~iin~r~~~~~~~Ii-TsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D------T---EWAREKVYNIIDSRYRKGLPTIV-TTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C------C---HHHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 1 12235566666654433333444 555 44443 334433 42 33455555553
No 368
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.53 E-value=2.9e-06 Score=89.84 Aligned_cols=160 Identities=24% Similarity=0.356 Sum_probs=104.9
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEec---------
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG--------- 460 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~--------- 460 (719)
+.+.-+.|++.+|..|--.... +.-.|+|+.|+.||||||++++||..+.---+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4566788998888877433211 223579999999999999999999987321111111
Q ss_pred ----c-------------------chhhhccCCchhh-H-----HH-------HHH---HHHhCCCEEEEEeccchhhcc
Q 005014 461 ----P-------------------ELLTMWFGESEAN-V-----RE-------IFD---KARQSAPCVLFFDELDSIATQ 501 (719)
Q Consensus 461 ----~-------------------~l~~~~~g~se~~-i-----~~-------~f~---~a~~~~p~il~iDEid~l~~~ 501 (719)
. .+...-.|.++.. + .+ .|+ .|+.+ ..|+++||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc--
Confidence 0 0111112333331 1 11 111 12222 3599999998763
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-CCCcccCCCCCcceEEEeCCC-CHHH
Q 005014 502 RGSSVGDAGGAADRVLNQLLTEMDGM-----------SAKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DEES 568 (719)
Q Consensus 502 r~~~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vi~atn~~~-~ld~allrpgRf~~~i~~~~p-~~~~ 568 (719)
+.+++.||+.+... ....++++|+|+|.-+ .|-|-|+- ||...|.+..| +.++
T Consensus 158 ------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 158 ------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred ------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 56888888877642 2235799999999753 67788887 99999988766 7899
Q ss_pred HHHHHHHHhcc
Q 005014 569 RLQIFKACLRK 579 (719)
Q Consensus 569 r~~Il~~~~~~ 579 (719)
|.+|.+..+..
T Consensus 224 rv~Ii~r~~~f 234 (423)
T COG1239 224 RVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHh
Confidence 99999888754
No 369
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=8.1e-07 Score=93.30 Aligned_cols=129 Identities=13% Similarity=0.201 Sum_probs=92.2
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCC-----------------------eEEEEeccchhhhccCCchhhHHHHHHH
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQA-----------------------NFISVKGPELLTMWFGESEANVREIFDK 481 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~-----------------------~~i~v~~~~l~~~~~g~se~~i~~~f~~ 481 (719)
+.+..+||+||.|+||+++|+++|..+-+ .|+.+.... .++.+ +-..||.+-+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 44567999999999999999999987521 123332210 00111 12345655544
Q ss_pred HH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcce
Q 005014 482 AR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 557 (719)
Q Consensus 482 a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~ 557 (719)
+. .....|++||++|.+. ...-|.||+.++. +..++++|..|+.++.|-|.+++ |+-
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq- 160 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ- 160 (319)
T ss_pred HhhCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-
Confidence 43 3345799999999973 3467899999996 45568888899999999999988 986
Q ss_pred EEEeCCCCHHHHHHHHHH
Q 005014 558 LIYIPLPDEESRLQIFKA 575 (719)
Q Consensus 558 ~i~~~~p~~~~r~~Il~~ 575 (719)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999999888777754
No 370
>PRK08181 transposase; Validated
Probab=98.51 E-value=3.1e-07 Score=94.37 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=50.9
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccC-CchhhHHHHHHHHHhCCCEEEEEeccchhh
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIA 499 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g-~se~~i~~~f~~a~~~~p~il~iDEid~l~ 499 (719)
..+++|+||||||||+||.+++.++ +..++.++.++++..+.. ........+++... .+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 4569999999999999999999764 667788888888765421 11223344555443 34699999998753
No 371
>PRK13409 putative ATPase RIL; Provisional
Probab=98.51 E-value=9.1e-07 Score=101.55 Aligned_cols=292 Identities=19% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeE--EE-----------Eechhh---------------------------
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETGAFF--FC-----------INGPEI--------------------------- 190 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~~~~--i~-----------v~~~~l--------------------------- 190 (719)
+.++..+.|.||+|+|||||++.|++.+.... +. +++.++
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~ 175 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKV 175 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhh
Q ss_pred ----------------------------------hhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHH
Q 005014 191 ----------------------------------MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 236 (719)
Q Consensus 191 ----------------------------------~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~ 236 (719)
...+.| .++-+..+..+....|.++++|| +.+..
T Consensus 176 ~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSg--Ge~qrv~ia~al~~~p~lllLDE----------Pts~L 243 (590)
T PRK13409 176 FKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSG--GELQRVAIAAALLRDADFYFFDE----------PTSYL 243 (590)
T ss_pred hcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCH--HHHHHHHHHHHHhcCCCEEEEEC----------CCCCC
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEe--------CCCChHHHHHHHHHHhcCCCCCC
Q 005014 237 ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI--------GVPDEVGRLEVLRIHTKNMKLSD 308 (719)
Q Consensus 237 ~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i--------~~P~~~~R~~il~~~~~~~~l~~ 308 (719)
+..-...+...+..+.. ...+|.++++.+.++. -.++.+.+ ...........+..+...+....
T Consensus 244 D~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~------~~D~v~vl~~~~g~~g~~~~~~~~~~~i~~~~~~~~~~e 315 (590)
T PRK13409 244 DIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDY------LADNVHIAYGEPGAYGVVSKPKGVRVGINEYLKGYLPEE 315 (590)
T ss_pred CHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHH------hCCEEEEEeCCccccceecchhHHHHhHHHHHHhcchhh
Q ss_pred cccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccC
Q 005014 309 DVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVP 388 (719)
Q Consensus 309 ~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~ 388 (719)
. ..+......................+..
T Consensus 316 ~---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (590)
T PRK13409 316 N---------------------------------------------------MRIRPEPIEFEERPPRDESERETLVEYP 344 (590)
T ss_pred h---------------------------------------------------hhccccCcceecCCCccccCCceEEEEc
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHh----CCeEEEEeccc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANEC----QANFISVKGPE 462 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~----~~~~i~v~~~~ 462 (719)
+++. .-....+...++....| +.|.||+|+|||||++++++.. |.-.+.++.+-
T Consensus 345 ~ls~--------------------~~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y 404 (590)
T PRK13409 345 DLTK--------------------KLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY 404 (590)
T ss_pred ceEE--------------------EECCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE
Q ss_pred hhhhccCCchhhHHHHHHH-------------------------------------------HHhCCCEEEEEeccchhh
Q 005014 463 LLTMWFGESEANVREIFDK-------------------------------------------ARQSAPCVLFFDELDSIA 499 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~-------------------------------------------a~~~~p~il~iDEid~l~ 499 (719)
+.....-.....+.+.+.. +-...|.++++||
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE----- 479 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE----- 479 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 005014 500 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 546 (719)
Q Consensus 500 ~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld 546 (719)
...+........+...|..+....+..||.+|+.++.++
T Consensus 480 --------Pt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~ 518 (590)
T PRK13409 480 --------PSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518 (590)
T ss_pred --------CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
No 372
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=1.2e-06 Score=93.60 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=97.4
Q ss_pred cccccc-hHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe----------------
Q 005014 119 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 181 (719)
Q Consensus 119 ~~~i~G-~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~---------------- 181 (719)
|+.|.| .+..++.|...+.. -..+..+||+||+|+||+++|+++|+.+.+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 566666 77788888777643 1233468999999999999999999886432
Q ss_pred --------EEEEechhhhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhh
Q 005014 182 --------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 249 (719)
Q Consensus 182 --------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~ 249 (719)
+..+... +.. -.-..++.+.+... .....|++|||+|.+-. ...+.|+..++
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHHHhc
Confidence 1111110 000 11234555554432 23346999999987742 23466888887
Q ss_pred cccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHH
Q 005014 250 GLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 299 (719)
Q Consensus 250 ~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~ 299 (719)
... ..+++|.+|+.+..+-+.+++ |. ..+.+..|+.++-.+.|+.
T Consensus 136 EPp--~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 EPS--GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCC--CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 643 355556677788899999998 66 6689999998887777753
No 373
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.51 E-value=4.4e-07 Score=97.14 Aligned_cols=195 Identities=23% Similarity=0.324 Sum_probs=114.0
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 465 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~ 465 (719)
......|+|.......+.+.+... ......+||.|.+||||-.+|++|-..+ +.+|+.+||+.+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 445667788777766666555421 1234569999999999999999999887 57999999976632
Q ss_pred h-----ccCC----chhh---HHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcC-----CC
Q 005014 466 M-----WFGE----SEAN---VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----MS 528 (719)
Q Consensus 466 ~-----~~g~----se~~---i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~ 528 (719)
. .+|. .-.. -+--|+.|.. .-+|+|||..|- -.+...||..+.. +.
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelP--------------L~lQaKLLRvLQegEieRvG 350 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELP--------------LALQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCC--------------HHHHHHHHHHHhhcceeecC
Confidence 1 1111 0001 1123444433 489999997763 2344556555443 33
Q ss_pred CCC----cEEEEEecCCCCCCCcccCCCCCcce-------EEEeCCCCHHHH----HHHHHHHhc----cCCC-CCccCH
Q 005014 529 AKK----TVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESR----LQIFKACLR----KSPV-SKDVDL 588 (719)
Q Consensus 529 ~~~----~v~vi~atn~~~~ld~allrpgRf~~-------~i~~~~p~~~~r----~~Il~~~~~----~~~~-~~~~d~ 588 (719)
+.+ .|-||+|||+ .|..++.. |+|-. ++.+..|-..+| ..+.+.+++ +.+. ....+-
T Consensus 351 ~~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 322 5889999998 33333332 55532 222233444333 333344443 3333 222333
Q ss_pred HHHHHHc-cCCCH--HHHHHHHHHHHHHH
Q 005014 589 RALAKYT-QGFSG--ADITEICQRACKYA 614 (719)
Q Consensus 589 ~~la~~~-~~~sg--~di~~~~~~A~~~a 614 (719)
+.+.... ..|.| +++++++.+|+..|
T Consensus 428 ~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 3333322 34655 99999999999988
No 374
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.3e-07 Score=95.89 Aligned_cols=96 Identities=35% Similarity=0.558 Sum_probs=70.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh-hcccc-hHHHHHHHHHHHH----hcCCcEEEEccccccCCC
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE-SESNLRKAFEEAE----KNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~-~~~g~-~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~ 228 (719)
.+|||.||+|+|||.|++.||+.++.+|...+|..+.+ .|+|+ .+.-+..+++.|. ..+..|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 47999999999999999999999999999999998875 46664 4566677776653 334579999999999843
Q ss_pred CCCC---chHHHHHHHHHHHHHhhc
Q 005014 229 REKT---HGEVERRIVSQLLTLMDG 250 (719)
Q Consensus 229 ~~~~---~~~~~~~v~~~L~~~l~~ 250 (719)
...- .+--..-+...|+.++++
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 2211 011113355667888775
No 375
>PRK08181 transposase; Validated
Probab=98.49 E-value=7.2e-07 Score=91.64 Aligned_cols=101 Identities=23% Similarity=0.417 Sum_probs=62.0
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccc-hHHHHHHHHHHHHhcCCcEEEEccccccCCC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~ 228 (719)
.+.+++|+||||||||+|+.+++..+ |..+++++..++....... ........++.. ..+.+|+|||++.....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 45689999999999999999998754 6677788877776644211 111222333332 34579999999876432
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCC
Q 005014 229 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 266 (719)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~ 266 (719)
. .....|.++++....+.. +|.|||.+
T Consensus 183 ~---------~~~~~Lf~lin~R~~~~s--~IiTSN~~ 209 (269)
T PRK08181 183 Q---------AETSVLFELISARYERRS--ILITANQP 209 (269)
T ss_pred H---------HHHHHHHHHHHHHHhCCC--EEEEcCCC
Confidence 1 112345555554433333 33366643
No 376
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=4.2e-07 Score=96.25 Aligned_cols=131 Identities=22% Similarity=0.285 Sum_probs=90.7
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCC-------------------------eEEEEeccchhhhccC-----Cchhh
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQA-------------------------NFISVKGPELLTMWFG-----ESEAN 474 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~-------------------------~~i~v~~~~l~~~~~g-----~se~~ 474 (719)
+.+..+||+||+|+|||++|+.+|..+.+ .|+.+....-. ..-| -+-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 45567999999999999999999988532 23444331100 0001 12345
Q ss_pred HHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccC
Q 005014 475 VREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALL 550 (719)
Q Consensus 475 i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~all 550 (719)
||.+.+.+.. ....|+++|+++.+- ....+.|++.|+... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 6777666643 345699999998873 345677888888764 34567778888999989888
Q ss_pred CCCCcceEEEeCCCCHHHHHHHHHH
Q 005014 551 RPGRLDQLIYIPLPDEESRLQIFKA 575 (719)
Q Consensus 551 rpgRf~~~i~~~~p~~~~r~~Il~~ 575 (719)
+ |+- .+.|++|+.++....++.
T Consensus 162 S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 7 874 889999999887777654
No 377
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.48 E-value=1.5e-06 Score=83.09 Aligned_cols=130 Identities=27% Similarity=0.493 Sum_probs=75.5
Q ss_pred ccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhc----
Q 005014 122 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL---- 194 (719)
Q Consensus 122 i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~---- 194 (719)
|+|-+..++++++.+.....+ +.+|||+|++||||+++|++|-... +.+|+.++|..+....
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 356666777777666543322 3589999999999999999998764 4689999997663221
Q ss_pred -ccch-------HHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---------CCCcE
Q 005014 195 -AGES-------ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHV 257 (719)
Q Consensus 195 -~g~~-------~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~---------~~~~v 257 (719)
.|.. ...-...|+.|.. ..||||||+.|.+. +...|+..++.-. ...++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-----------LQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-----------HHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhhHHH-----------HHHHHHHHHhhchhccccccccccccc
Confidence 1110 0011235555544 49999999998633 3345556655211 12367
Q ss_pred EEEEecCCCCCCCHHhhccCCC
Q 005014 258 IVIGATNRPNSIDPALRRFGRF 279 (719)
Q Consensus 258 ivI~atn~~~~ld~al~r~~Rf 279 (719)
-+|++|+.+ +...+. .|+|
T Consensus 136 RiI~st~~~--l~~~v~-~g~f 154 (168)
T PF00158_consen 136 RIIASTSKD--LEELVE-QGRF 154 (168)
T ss_dssp EEEEEESS---HHHHHH-TTSS
T ss_pred eEEeecCcC--HHHHHH-cCCC
Confidence 888888853 333333 3556
No 378
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=7.1e-07 Score=101.41 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|+|||||++.|++...
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467888899999999999999999998764
No 379
>PF13173 AAA_14: AAA domain
Probab=98.48 E-value=7.9e-07 Score=81.27 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=69.6
Q ss_pred cceeeecCCCCchhHHHHHHHHHhC--CeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCC
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 505 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~--~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~ 505 (719)
+.++|+||.||||||+++.++.... .++++++..+.......... +...+.......+.++|||||+.+-.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 3489999999999999999998876 77888887765432111111 22333222222567999999988621
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC--C-cccCCCCCcceEEEeCCCCHHH
Q 005014 506 VGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII--D-PALLRPGRLDQLIYIPLPDEES 568 (719)
Q Consensus 506 ~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l--d-~allrpgRf~~~i~~~~p~~~~ 568 (719)
....+..+... . .++-||.|+.....+ + ...+ +||.. .+++.|.+..|
T Consensus 76 -------~~~~lk~l~d~---~---~~~~ii~tgS~~~~l~~~~~~~l-~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 -------WEDALKFLVDN---G---PNIKIILTGSSSSLLSKDIAESL-AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------HHHHHHHHHHh---c---cCceEEEEccchHHHhhcccccC-CCeEE-EEEECCCCHHH
Confidence 22333444331 1 223344444332222 1 1223 36886 77888888765
No 380
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.6e-07 Score=109.20 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|+||+|||||||++.|++..
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788899999999999999999999975
No 381
>PRK09183 transposase/IS protein; Provisional
Probab=98.46 E-value=3.4e-07 Score=94.10 Aligned_cols=71 Identities=24% Similarity=0.415 Sum_probs=50.2
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccC-CchhhHHHHHHHHHhCCCEEEEEeccchh
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSI 498 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g-~se~~i~~~f~~a~~~~p~il~iDEid~l 498 (719)
..+++|+||||||||+|+.+++... +..+..++.+++...+.. .....+..+|+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 4569999999999999999998764 566777777777644321 1122355566654 245679999999765
No 382
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.45 E-value=4.7e-07 Score=91.64 Aligned_cols=100 Identities=22% Similarity=0.298 Sum_probs=65.0
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccC---CchhhHHHHHHHHHhCCCEEEEEeccchhhcc
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIATQ 501 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g---~se~~i~~~f~~a~~~~p~il~iDEid~l~~~ 501 (719)
.+++|+|+||||||+|+.++|.++ +..++.++.+++.....+ ........+++... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999987 667888888888754322 11222334555443 457999999987521
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005014 502 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 542 (719)
Q Consensus 502 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~ 542 (719)
+.....++.+++..- . ..+..+|.|||..
T Consensus 177 --------s~~~~~~l~~Ii~~R---y-~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRR---S-SSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHH---H-hCCCCEEEeCCCC
Confidence 223344555555441 1 1123567788863
No 383
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.45 E-value=2.4e-07 Score=107.99 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|+||+|||||||+++|++..
T Consensus 24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 346788899999999999999999999975
No 384
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.44 E-value=5.6e-07 Score=102.27 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=26.5
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|+|||||++.|++.+
T Consensus 32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346778889999999999999999999875
No 385
>PRK06526 transposase; Provisional
Probab=98.43 E-value=8.3e-07 Score=90.70 Aligned_cols=73 Identities=21% Similarity=0.428 Sum_probs=47.2
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccc-hHHHHHHHHHHHHhcCCcEEEEccccccC
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
..+.+++|+||||||||+|+.+++.++ |..+..++..++....... ....+...+... ..+.+|+|||++.+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 346789999999999999999998765 5555566666555433211 011122222222 346799999998764
No 386
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.42 E-value=4.2e-06 Score=93.70 Aligned_cols=173 Identities=18% Similarity=0.237 Sum_probs=96.5
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh-------hhccCCchh-----hHHHHHH-----HHHh-----
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------TMWFGESEA-----NVREIFD-----KARQ----- 484 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------~~~~g~se~-----~i~~~f~-----~a~~----- 484 (719)
.+-+||+|||||||||+++++|++++..+.....+-.. ..|.+.... .-...|. .++.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~ 124 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSM 124 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccc
Confidence 34588999999999999999999999887765432220 111111110 0011221 1121
Q ss_pred ------CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEe-c------CCC--------C
Q 005014 485 ------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA-T------NRP--------D 543 (719)
Q Consensus 485 ------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~a-t------n~~--------~ 543 (719)
..+.||++||+=.++.. ...++-+.|...+..-... .+++|.+ + |.. .
T Consensus 125 ~g~~~~~~~kvILVEDlPN~~~~----------~~~~f~~~L~~~l~~~~~~-PlV~iiSe~~~~~~~~~~~~~~~t~~~ 193 (519)
T PF03215_consen 125 SGSNSSSNKKVILVEDLPNVFHR----------DTSRFREALRQYLRSSRCL-PLVFIISETESLSGDNSYRSNSFTAER 193 (519)
T ss_pred cCCCcCCCceEEEeeccccccch----------hHHHHHHHHHHHHHcCCCC-CEEEEEecccccCCCCcccccchhhhh
Confidence 24679999998755421 1133334444444322111 5666666 1 111 1
Q ss_pred CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccC-----C---CCCccC-HHHHHHHccCCCHHHHHHHHHHHHHHH
Q 005014 544 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS-----P---VSKDVD-LRALAKYTQGFSGADITEICQRACKYA 614 (719)
Q Consensus 544 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~-----~---~~~~~d-~~~la~~~~~~sg~di~~~~~~A~~~a 614 (719)
.+.+.++.-.++ .+|.|.+-...-...-|+..+... + .....+ ++.|++.+ ++||+..+..-.+.+
T Consensus 194 L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~ 268 (519)
T PF03215_consen 194 LFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWC 268 (519)
T ss_pred ccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHh
Confidence 455666542244 488998877766666666555432 1 111122 55666554 459999998888888
Q ss_pred H
Q 005014 615 I 615 (719)
Q Consensus 615 ~ 615 (719)
.
T Consensus 269 ~ 269 (519)
T PF03215_consen 269 L 269 (519)
T ss_pred c
Confidence 7
No 387
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=1.5e-06 Score=79.45 Aligned_cols=69 Identities=32% Similarity=0.411 Sum_probs=46.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC--CeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEcccccc
Q 005014 155 KGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 225 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~--~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l 225 (719)
+.++|+||.||||||+++.++..+. ..+++++..+.......... +...+.......+.++||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 5699999999999999999998876 66778877665432111111 222222222235679999999877
No 388
>PRK06526 transposase; Provisional
Probab=98.41 E-value=3.1e-07 Score=93.88 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=59.1
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCC-chhhHHHHHHHHHhCCCEEEEEeccchhhccc
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQR 502 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~il~iDEid~l~~~r 502 (719)
+.+++|+||||||||+||.+++.++ +.....++.++++...... ....+...+... ..+.+|+|||++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~- 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE- 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC-
Confidence 4579999999999999999999875 5555566666665433110 111222233322 34579999999876321
Q ss_pred CCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005014 503 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 542 (719)
Q Consensus 503 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~ 542 (719)
.....++-+++...- ... -+|.|||.+
T Consensus 175 --------~~~~~~L~~li~~r~---~~~--s~IitSn~~ 201 (254)
T PRK06526 175 --------PEAANLFFQLVSSRY---ERA--SLIVTSNKP 201 (254)
T ss_pred --------HHHHHHHHHHHHHHH---hcC--CEEEEcCCC
Confidence 122334444443322 222 367788875
No 389
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.41 E-value=2.1e-06 Score=89.51 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=47.4
Q ss_pred CCCCcceeeecCCCCchhHHHHHHHHHhC-CeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcc
Q 005014 424 MSPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 501 (719)
Q Consensus 424 ~~~~~gill~GppGtGKT~la~~la~~~~-~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~ 501 (719)
++....+-++|.+||||||+.+++..... ..-|.+.+.++.. .+.+.++-+- ..-.|+|=|-..+|.++
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~----~~~~~mrplR-----~~mQvVFQDPygSLsPR 379 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG----LSRKEMRPLR-----RRMQVVFQDPYGSLSPR 379 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc----cChhhhhhhh-----hhceEEEeCCCCCCCcc
Confidence 34444599999999999999999998864 3567777776633 3444444332 22259999988887553
No 390
>PRK09183 transposase/IS protein; Provisional
Probab=98.41 E-value=1.1e-06 Score=90.29 Aligned_cols=75 Identities=25% Similarity=0.472 Sum_probs=51.8
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccc-hHHHHHHHHHHHHhcCCcEEEEccccccC
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
+..+.+++|+||||||||+|+.+++..+ |..+.++++.++...+... ....+..+++.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3556789999999999999999997663 6667777777766433211 112244555544 3456799999998754
No 391
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.1e-06 Score=99.65 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.5
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|+|||||++.+++..
T Consensus 19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 346788889999999999999999999875
No 392
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.40 E-value=8.1e-07 Score=100.86 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.6
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|+|||||++++++.+
T Consensus 25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 25 LNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 346788899999999999999999999875
No 393
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.40 E-value=5e-07 Score=94.89 Aligned_cols=70 Identities=31% Similarity=0.488 Sum_probs=49.3
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCC-chhhHHHHHHHHHhCCCEEEEEeccch
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 497 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~il~iDEid~ 497 (719)
..+|++|+||+|||||+|+.++|+++ +.....+..++++...... ....+...++.... ..+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~--~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE--APVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC--CCEEEEecCCC
Confidence 35689999999999999999999997 6677778888776443211 11123344444433 36999999976
No 394
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.40 E-value=3.4e-07 Score=103.70 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|+|||||++++++.+
T Consensus 24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 346788899999999999999999999875
No 395
>PRK12377 putative replication protein; Provisional
Probab=98.39 E-value=6.9e-07 Score=90.65 Aligned_cols=70 Identities=24% Similarity=0.373 Sum_probs=48.0
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCC--chhhHHHHHHHHHhCCCEEEEEeccchh
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE--SEANVREIFDKARQSAPCVLFFDELDSI 498 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~--se~~i~~~f~~a~~~~p~il~iDEid~l 498 (719)
..+++|+||||||||+||.++|+.+ +..++.++.++++...-.. .......+++... ...+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3579999999999999999999986 5667778888876532110 0011223444433 3469999999764
No 396
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.1e-06 Score=100.15 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=26.4
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|||||||++.|++..
T Consensus 26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 346788889999999999999999998865
No 397
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.38 E-value=7.6e-06 Score=92.98 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=49.0
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh--------------hc--------cC------Cc
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------MW--------FG------ES 471 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~--------------~~--------~g------~s 471 (719)
|+.....++++||||+|||+++..++... +.+.++++..+-.. .+ .. ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56666669999999999999999887653 45555554332110 00 00 00
Q ss_pred hhhHHHHHHHHHhCCCEEEEEeccchhhc
Q 005014 472 EANVREIFDKARQSAPCVLFFDELDSIAT 500 (719)
Q Consensus 472 e~~i~~~f~~a~~~~p~il~iDEid~l~~ 500 (719)
+..+..+.+......+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 12233444455566788999999988764
No 398
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.37 E-value=1.9e-06 Score=98.43 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|||||||+++|++..
T Consensus 21 ~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 346788889999999999999999999984
No 399
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.37 E-value=4e-07 Score=88.02 Aligned_cols=70 Identities=31% Similarity=0.550 Sum_probs=47.4
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCC-chhhHHHHHHHHHhCCCEEEEEeccch
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 497 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~il~iDEid~ 497 (719)
...+++|+||||||||+||.+++.++ +.....++.++++...-.. ........++..... .+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccce
Confidence 35679999999999999999999875 6778888888887643221 112233445554433 5999999864
No 400
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.37 E-value=3.3e-06 Score=94.34 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=35.2
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
..|+++.|....++.+.-. +..+.+++|+|||||||||+++.+++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 3677888877664443321 2345689999999999999999999865
No 401
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.37 E-value=6.8e-07 Score=94.58 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=67.4
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccC---CchhhHHHHHHHHHhCCCEEEEEeccchhhcc
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIATQ 501 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g---~se~~i~~~f~~a~~~~p~il~iDEid~l~~~ 501 (719)
.+++|+||+|||||+|+.++|+++ +..++.++.+++...... .........++... ...+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC-
Confidence 679999999999999999999986 678888888888664321 01111122234333 336999999977421
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC-C----CCCcccCCCCCc
Q 005014 502 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-D----IIDPALLRPGRL 555 (719)
Q Consensus 502 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~-~----~ld~allrpgRf 555 (719)
. ....+.|...++......+ -+|.|||.+ + .+++++.+ |+
T Consensus 261 --------t---~~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~~~~eri~S--RL 305 (329)
T PRK06835 261 --------T---EFSKSELFNLINKRLLRQK-KMIISTNLSLEELLKTYSERISS--RL 305 (329)
T ss_pred --------C---HHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHhHHHHH--HH
Confidence 1 2233445555544332222 356677763 2 24555554 54
No 402
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.8e-05 Score=85.10 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=25.2
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHH
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVAN 176 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~ 176 (719)
+.+..++..-|+|++|+|||||.|+||+
T Consensus 101 L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 101 LTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeecccccceeCCCCCcHHHHHHHHHh
Confidence 4466788899999999999999999998
No 403
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1e-07 Score=101.87 Aligned_cols=48 Identities=33% Similarity=0.605 Sum_probs=39.5
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 451 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~ 451 (719)
...+.||.|++..|+.+..... -..++||+||||||||+||+-+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 3478899999999999875543 24579999999999999999887664
No 404
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.35 E-value=2.4e-06 Score=91.37 Aligned_cols=126 Identities=25% Similarity=0.384 Sum_probs=83.9
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHH----hCCeEEEEechhh
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFCINGPEI 190 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~----l~~~~i~v~~~~l 190 (719)
..-.+++++|-+...+++++.+.. + ...+.+|||+|++||||+.+|+.|... ...+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 344677899999988888888765 1 244668999999999999999998543 3678999999876
Q ss_pred hhhcccc------------hHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc------
Q 005014 191 MSKLAGE------------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK------ 252 (719)
Q Consensus 191 ~~~~~g~------------~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~------ 252 (719)
....... ....-..+|+.|.. ..||+|||+.+.+.. ...|+..++...
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~~-----------Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPEG-----------QEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHhH-----------HHHHHHHHHcCceEecCC
Confidence 4322110 11112234444433 489999999986542 345666666411
Q ss_pred ---CCCcEEEEEecCC
Q 005014 253 ---SRAHVIVIGATNR 265 (719)
Q Consensus 253 ---~~~~vivI~atn~ 265 (719)
....|.+|+||+.
T Consensus 208 ~~~~~~dVRli~AT~~ 223 (403)
T COG1221 208 SQPRPVDVRLICATTE 223 (403)
T ss_pred CCCcCCCceeeecccc
Confidence 1236778888773
No 405
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=5.8e-06 Score=86.57 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=25.8
Q ss_pred hcCCCCcceeeecCCCCchhHHHHHHHHHh
Q 005014 422 FGMSPSKGVLFYGPPGCGKTLLAKAIANEC 451 (719)
Q Consensus 422 ~~~~~~~gill~GppGtGKT~la~~la~~~ 451 (719)
+|+...+.|.++||+|+||+||.+.+.+.+
T Consensus 608 FGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 608 FGIDMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred ccccccceeEEECCCCccHHHHHHHHhcCC
Confidence 456666779999999999999999998876
No 406
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.34 E-value=1.7e-06 Score=97.73 Aligned_cols=131 Identities=19% Similarity=0.219 Sum_probs=80.7
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEE----echhhhhhc-----ccchHHHHHHHHHHHHhcCCcEEEEccccc
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCI----NGPEIMSKL-----AGESESNLRKAFEEAEKNAPSIIFIDEIDS 224 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~v----~~~~l~~~~-----~g~~~~~l~~vf~~a~~~~p~iL~iDEid~ 224 (719)
..+|||+|+||+|||++|++++.......+.. ++..+.... .|+..-.-+ .+.. ....+++|||++.
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G-~l~~---A~~Gil~iDEi~~ 311 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGG-ALVL---ADNGVCCIDEFDK 311 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCc-cEEe---cCCCEEEEechhh
Confidence 34799999999999999999999876432211 111121110 011000000 0111 2245999999998
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCcEEEEEecCCCC-------------CCCHHhhccCCCc
Q 005014 225 IAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-------------SIDPALRRFGRFD 280 (719)
Q Consensus 225 l~~~~~~~~~~~~~~v~~~L~~~l~~~~-----------~~~~vivI~atn~~~-------------~ld~al~r~~Rf~ 280 (719)
+.+. ....|+..|+.-. -..++.||+|+|+.. .+++++.+ ||+
T Consensus 312 l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFd 378 (509)
T smart00350 312 MDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFD 378 (509)
T ss_pred CCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--cee
Confidence 7532 2344555554321 124678999999753 47888887 997
Q ss_pred eEE-EeCCCChHHHHHHHHHHh
Q 005014 281 REI-DIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 281 ~~i-~i~~P~~~~R~~il~~~~ 301 (719)
..+ ....|+.+.+.+|++..+
T Consensus 379 Li~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 379 LLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred eEEEecCCCChHHHHHHHHHHH
Confidence 765 457899999888887644
No 407
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.34 E-value=1.4e-06 Score=97.99 Aligned_cols=150 Identities=28% Similarity=0.419 Sum_probs=90.6
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHH-----------hCCeEEEEe
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE-----------TGAFFFCIN 186 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~-----------l~~~~i~v~ 186 (719)
.|+++.|.+..++++++.+...- ....+|||+|++||||+++|++|-.. .+.+|+.+|
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 57789999999888888775421 23457999999999999999999776 356899999
Q ss_pred chhhhhhc-----ccchH--------HHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-
Q 005014 187 GPEIMSKL-----AGESE--------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK- 252 (719)
Q Consensus 187 ~~~l~~~~-----~g~~~--------~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~- 252 (719)
|..+.... .|... ..-...|+.+. ...||||||+.+... +...|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-----------LQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-----------HHHHHHhhhhcCeE
Confidence 98653211 11000 00012333332 358999999988533 2344555554311
Q ss_pred --------CCCcEEEEEecCCCCCCCHHhhccCCCc-------eEEEeCCCChHHHHH
Q 005014 253 --------SRAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 295 (719)
Q Consensus 253 --------~~~~vivI~atn~~~~ld~al~r~~Rf~-------~~i~i~~P~~~~R~~ 295 (719)
....+-+|++|+.. +...+ ..|+|. ..+.+..|...+|.+
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~e 406 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVA 406 (538)
T ss_pred EecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchh
Confidence 11245678777643 22211 112222 235666777777754
No 408
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.34 E-value=3.7e-06 Score=86.02 Aligned_cols=73 Identities=30% Similarity=0.526 Sum_probs=50.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccchHH-HHHHHHHHHHhcCCcEEEEccccccC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
.+.+++|+||||+|||+||-+++.++ |..++.+..++++......... ....-+... -....+|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc
Confidence 56799999999999999999998876 6778888888887654332211 111111121 1234699999987653
No 409
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=3.2e-06 Score=77.31 Aligned_cols=98 Identities=24% Similarity=0.392 Sum_probs=61.5
Q ss_pred cceeeecCCCCchhHHHHHHHHHh--------CCeEEEEeccchhh----------hc----cC-Cc-hhhHHHHHHHHH
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC--------QANFISVKGPELLT----------MW----FG-ES-EANVREIFDKAR 483 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~--------~~~~i~v~~~~l~~----------~~----~g-~s-e~~i~~~f~~a~ 483 (719)
+.++++||||+|||++++.++... ..+++.++++...+ .+ .+ .+ ......+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 458999999999999999999987 67778887654431 00 01 12 222344445555
Q ss_pred hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 005014 484 QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 540 (719)
Q Consensus 484 ~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn 540 (719)
.....+|+|||+|.+. + ..+++.|...++ ...-.++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 5555699999999974 1 456777766666 3333555555553
No 410
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=1.2e-06 Score=100.27 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|||||||++.|++.+
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788899999999999999999999875
No 411
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.33 E-value=9.2e-07 Score=100.40 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=26.5
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|+|||||++.|++..
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346788889999999999999999999865
No 412
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.33 E-value=9.9e-07 Score=95.80 Aligned_cols=153 Identities=30% Similarity=0.442 Sum_probs=94.1
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhh-
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS- 192 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~- 192 (719)
-+|++|.|-+.++.++.+..... ......|||.|.+||||..+|+++-+.. +.+|+.+||..+-.
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 47889999888887777766542 2344579999999999999999997664 57899999965422
Q ss_pred --------hcccc----hHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc-----c---c
Q 005014 193 --------KLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-----L---K 252 (719)
Q Consensus 193 --------~~~g~----~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~-----~---~ 252 (719)
-..|. ...--...|+.|... .||+|||..+.. .+ ...|+..+.. + .
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl-------~L----QaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPL-------PL----QAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCH-------HH----HHHHHHHHhhceEEecCCCC
Confidence 11111 111122345555443 899999987742 22 2344444432 1 1
Q ss_pred -CCCcEEEEEecCCCCCCCHHhhccCCCce-------EEEeCCCChHHHHHHH
Q 005014 253 -SRAHVIVIGATNRPNSIDPALRRFGRFDR-------EIDIGVPDEVGRLEVL 297 (719)
Q Consensus 253 -~~~~vivI~atn~~~~ld~al~r~~Rf~~-------~i~i~~P~~~~R~~il 297 (719)
....|-||+|||.. +..++.. |+|.. .+.+..|...+|.+-+
T Consensus 377 ~~~vDVRIIAATN~n--L~~~i~~-G~FReDLYYRLNV~~i~iPPLReR~eDI 426 (560)
T COG3829 377 PIPVDVRIIAATNRN--LEKMIAE-GTFREDLYYRLNVIPITIPPLRERKEDI 426 (560)
T ss_pred ceeeEEEEEeccCcC--HHHHHhc-CcchhhheeeeceeeecCCCcccCcchH
Confidence 12368899999964 2222221 33322 3456777777775433
No 413
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=3.4e-06 Score=77.18 Aligned_cols=98 Identities=22% Similarity=0.415 Sum_probs=59.0
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh--------CCeEEEEechhhhh----------h----ccc--chHHHHHHHHHHH
Q 005014 154 PKGILLYGPPGSGKTLIARAVANET--------GAFFFCINGPEIMS----------K----LAG--ESESNLRKAFEEA 209 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l--------~~~~i~v~~~~l~~----------~----~~g--~~~~~l~~vf~~a 209 (719)
...++|+||+|+|||++++.++..+ ...++.++++.... . ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4579999999999999999999987 66777777654321 0 001 1233334444444
Q ss_pred HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEec
Q 005014 210 EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 263 (719)
Q Consensus 210 ~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~at 263 (719)
......+|+|||+|.+. + ..++..|..+++ .....++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44544599999999874 1 335556666555 233355555544
No 414
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.32 E-value=2.1e-06 Score=91.41 Aligned_cols=146 Identities=22% Similarity=0.261 Sum_probs=83.7
Q ss_pred cchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcc----
Q 005014 123 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLA---- 195 (719)
Q Consensus 123 ~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~---- 195 (719)
.|.+..++++.+.+.... ....+|||+|++||||+++|++|-... +.+|+.++|..+.....
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 455566666665554321 234579999999999999999997654 46899999976532111
Q ss_pred -cchH-------HHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---------CCCcEE
Q 005014 196 -GESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVI 258 (719)
Q Consensus 196 -g~~~-------~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~---------~~~~vi 258 (719)
|... ......|+.+ ....||||||+.+... +...|+..++.-. ....+.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-----------VQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-----------HHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1000 0001113333 3468999999988532 2344555554321 123567
Q ss_pred EEEecCCC-------CCCCHHhhccCCCceEEEeCCCChHHHHHH
Q 005014 259 VIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLEV 296 (719)
Q Consensus 259 vI~atn~~-------~~ld~al~r~~Rf~~~i~i~~P~~~~R~~i 296 (719)
+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+-
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eD 178 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQED 178 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhh
Confidence 78887643 122334433 442 345666777766543
No 415
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.32 E-value=2.8e-06 Score=84.18 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..|.|.||+|||||||.+.+|+..
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356788889999999999999999999875
No 416
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.32 E-value=2.1e-06 Score=91.57 Aligned_cols=149 Identities=22% Similarity=0.284 Sum_probs=89.0
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhh--
Q 005014 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK-- 193 (719)
Q Consensus 119 ~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~-- 193 (719)
++++.|.+..++++.+.+.... ....+|||+|++||||+++|+++-... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4568888888888877765422 234579999999999999999997654 368999999875321
Q ss_pred ---cccchH-------HHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc--C-------C
Q 005014 194 ---LAGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--S-------R 254 (719)
Q Consensus 194 ---~~g~~~-------~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~--~-------~ 254 (719)
..|... ......++.+ ....|||||++.+... +...|+..++.-. . .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-----------VQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceee
Confidence 111000 0001122222 3468999999988532 2344555554311 0 1
Q ss_pred CcEEEEEecCCC-------CCCCHHhhccCCCceEEEeCCCChHHHHH
Q 005014 255 AHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 295 (719)
Q Consensus 255 ~~vivI~atn~~-------~~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 295 (719)
..+.+|++|+.. ..+.+.|.. ||. .+.+..|...+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 246777777643 233444443 452 23455666666654
No 417
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.31 E-value=1.2e-06 Score=89.54 Aligned_cols=68 Identities=28% Similarity=0.483 Sum_probs=48.8
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccC-----CchhhHHHHHHHHHhCCCEEEEEeccch
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-----ESEANVREIFDKARQSAPCVLFFDELDS 497 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g-----~se~~i~~~f~~a~~~~p~il~iDEid~ 497 (719)
...+++|+||||+|||+||-|+++++ |..++.+..++++...-. ..+.. +..... ...+|+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~---l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEK---LLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHH---HHHHhh--cCCEEEEecccC
Confidence 45789999999999999999999986 567888888888764321 11222 222122 235999999977
Q ss_pred h
Q 005014 498 I 498 (719)
Q Consensus 498 l 498 (719)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 4
No 418
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.31 E-value=6.6e-06 Score=78.35 Aligned_cols=133 Identities=25% Similarity=0.360 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe----------------------
Q 005014 124 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------------- 181 (719)
Q Consensus 124 G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~---------------------- 181 (719)
|.++.++.|...+.. -.-+..+||+||+|+||+++|+++|..+-+.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 566777777766653 1234569999999999999999999886321
Q ss_pred -EEEEechhhhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCc
Q 005014 182 -FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 256 (719)
Q Consensus 182 -~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~ 256 (719)
++.++...... .-.-..++.+.+... .....|++|||+|.+. ....+.|+..|+... .+
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEepp--~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEPP--EN 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHSTT--TT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCCC--CC
Confidence 22222211100 112345665555432 2345699999999875 234577888888754 46
Q ss_pred EEEEEecCCCCCCCHHhhccCCCceEEEeCC
Q 005014 257 VIVIGATNRPNSIDPALRRFGRFDREIDIGV 287 (719)
Q Consensus 257 vivI~atn~~~~ld~al~r~~Rf~~~i~i~~ 287 (719)
+.+|.+|+.++.+-+.+++ |. ..+.++.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 6777788889999999998 66 4455543
No 419
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.31 E-value=1e-06 Score=89.08 Aligned_cols=160 Identities=22% Similarity=0.366 Sum_probs=88.9
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCC-e--EEEEec-cch---------------------hhhcc-------------
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQA-N--FISVKG-PEL---------------------LTMWF------------- 468 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~-~--~i~v~~-~~l---------------------~~~~~------------- 468 (719)
...++|+||.|+|||+|++.+...... . .+.+.. ... .....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 456999999999999999999988732 1 111111 000 00000
Q ss_pred CCchhhHHHHHHHHHhCC-CEEEEEeccchhh-cccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEE-EEecCC--C-
Q 005014 469 GESEANVREIFDKARQSA-PCVLFFDELDSIA-TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI-IGATNR--P- 542 (719)
Q Consensus 469 g~se~~i~~~f~~a~~~~-p~il~iDEid~l~-~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~v-i~atn~--~- 542 (719)
......+..+++...... ..||+|||++.+. ..+ ....++..|.+.++......++.+ +++++. .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 112344566666655443 3899999999997 211 235677778888777554555444 444432 1
Q ss_pred C--CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC---CccCHHHHHHHccCCC
Q 005014 543 D--IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS---KDVDLRALAKYTQGFS 599 (719)
Q Consensus 543 ~--~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~---~~~d~~~la~~~~~~s 599 (719)
+ .-+..+.. |+.. +++++.+.++..++++..+++. .. .+.+++.+...+.|..
T Consensus 171 ~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 171 EFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred HhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 1 12234443 8887 9999999999999999988766 32 4556777777777643
No 420
>PRK06921 hypothetical protein; Provisional
Probab=98.31 E-value=3.3e-06 Score=87.09 Aligned_cols=69 Identities=29% Similarity=0.388 Sum_probs=45.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh----CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccc
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDS 224 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~ 224 (719)
...+++|+|++|+|||+|+.++|+++ +..++++...++........ ......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 45689999999999999999999975 45667777666544321111 1111222222 3457999999954
No 421
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.30 E-value=3.6e-06 Score=96.42 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=85.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCC--eEEEEechhhhhhcccchH--HHHH---HHHHH--HHhcCCcEEEEcccccc
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSKLAGESE--SNLR---KAFEE--AEKNAPSIIFIDEIDSI 225 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~--~~i~v~~~~l~~~~~g~~~--~~l~---~vf~~--a~~~~p~iL~iDEid~l 225 (719)
.+|||.|+||||||+++++++..++. +|+.+..........|... ..+. ..|+. .......+||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 37999999999999999999998764 4777764322233333210 0000 00000 00112359999999988
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCcEEEEEecCCCC---CCCHHhhccCCCceEEEeC-CCCh
Q 005014 226 APKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIG-VPDE 290 (719)
Q Consensus 226 ~~~~~~~~~~~~~~v~~~L~~~l~~~~-----------~~~~vivI~atn~~~---~ld~al~r~~Rf~~~i~i~-~P~~ 290 (719)
.+ .+...|+..|+.-. ....+.||+++|..+ .+.+++.. ||...+.+. +|..
T Consensus 97 ~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 DD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred CH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 53 24456666665321 123678888888765 67888887 898887766 4567
Q ss_pred HHHHHHHHHHh
Q 005014 291 VGRLEVLRIHT 301 (719)
Q Consensus 291 ~~R~~il~~~~ 301 (719)
.+|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 77888887654
No 422
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=5.6e-06 Score=87.87 Aligned_cols=133 Identities=15% Similarity=0.222 Sum_probs=90.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeE-------------------------EEEechhhh---------------
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETGAFF-------------------------FCINGPEIM--------------- 191 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~-------------------------i~v~~~~l~--------------- 191 (719)
.-+..+||+||+|+||+++|+.+|+.+.+.. ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 3456799999999999999999998875421 111110000
Q ss_pred ---hh----c-ccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEE
Q 005014 192 ---SK----L-AGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 259 (719)
Q Consensus 192 ---~~----~-~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~viv 259 (719)
++ . ..-.-..++.+.+... .....|++||++|.+-. ...+.|++.+++ ...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcC--CCcCcEE
Confidence 00 0 0011234555554432 23346999999998842 234778888885 4456778
Q ss_pred EEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHH
Q 005014 260 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 300 (719)
Q Consensus 260 I~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~ 300 (719)
|.+|+.++.+.|.+++ |+ ..+.+++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8888999999999998 77 68899999999888888653
No 423
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.29 E-value=3e-06 Score=96.92 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||++.|++.+.
T Consensus 30 l~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 30 LQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3467888999999999999999999999864
No 424
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.28 E-value=4.2e-06 Score=95.11 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|+|||||++.|++...
T Consensus 22 l~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 22 LEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467888899999999999999999998753
No 425
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=1.8e-05 Score=83.37 Aligned_cols=127 Identities=17% Similarity=0.255 Sum_probs=87.4
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCe------------------------EEEEechhhhhhcccchHHHHHHHHHHH
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 209 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 209 (719)
+..+||+||+|+||+++|+.+|+.+-+. ++.+... .++. -.-..++.+.+..
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~--I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKD--IGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCC--CCHHHHHHHHHHH
Confidence 4479999999999999999999887431 1112110 0111 1234555554443
Q ss_pred ----HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEe
Q 005014 210 ----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 285 (719)
Q Consensus 210 ----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i 285 (719)
..+...|++||++|.+-. ...+.|++.+++ ...++++|.+|+.++.+-|.+++ |. ..+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 234456999999998852 234678888886 34466777788889999999998 66 66889
Q ss_pred CCCChHHHHHHHHHH
Q 005014 286 GVPDEVGRLEVLRIH 300 (719)
Q Consensus 286 ~~P~~~~R~~il~~~ 300 (719)
++|+.++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999998887777654
No 426
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.27 E-value=1.1e-05 Score=81.38 Aligned_cols=180 Identities=30% Similarity=0.434 Sum_probs=91.9
Q ss_pred cchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe---EEEEech---------hh
Q 005014 123 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCINGP---------EI 190 (719)
Q Consensus 123 ~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~---~i~v~~~---------~l 190 (719)
.|-++++++|.+.+.. .+...++|+||.|+|||+|++.+...+... .+++... .+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 3556666666665432 234679999999999999999999987321 1111110 00
Q ss_pred -------------hh-hc------------ccchHHHHHHHHHHHHhc-CCcEEEEccccccC-CCCCCCchHHHHHHHH
Q 005014 191 -------------MS-KL------------AGESESNLRKAFEEAEKN-APSIIFIDEIDSIA-PKREKTHGEVERRIVS 242 (719)
Q Consensus 191 -------------~~-~~------------~g~~~~~l~~vf~~a~~~-~p~iL~iDEid~l~-~~~~~~~~~~~~~v~~ 242 (719)
.. .. .......+..+++..... ...+|+|||++.+. .... ...+..
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~------~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE------DKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT------THHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc------hHHHHH
Confidence 00 00 011234456666665543 34899999999987 2211 134556
Q ss_pred HHHHHhhcccCCCcEEEEEecCCCC---C-CCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCC-C-CCcccHHHHH
Q 005014 243 QLLTLMDGLKSRAHVIVIGATNRPN---S-IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-L-SDDVDLERIA 316 (719)
Q Consensus 243 ~L~~~l~~~~~~~~vivI~atn~~~---~-ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~-l-~~~~~l~~la 316 (719)
.|.+.++......++.+|.+..... . .+..-.-.+|+.. +.+++.+.++-.+++....+... + .++.++..+.
T Consensus 143 ~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 143 SLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHH
T ss_pred HHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 6777776644444444443332211 0 0000111357766 99999999999999988765541 1 2455677777
Q ss_pred HHhCCC
Q 005014 317 KDTHGY 322 (719)
Q Consensus 317 ~~t~g~ 322 (719)
..+.|+
T Consensus 222 ~~~gG~ 227 (234)
T PF01637_consen 222 SLTGGN 227 (234)
T ss_dssp HHHTT-
T ss_pred HHhCCC
Confidence 777765
No 427
>PRK06921 hypothetical protein; Provisional
Probab=98.27 E-value=1.1e-06 Score=90.57 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=45.2
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh----CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccch
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 497 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~ 497 (719)
..+++|+||||||||+|+.++|+++ +..++++...+++..... ........++... ...+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~--~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD-DFDLLEAKLNRMK--KVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH-HHHHHHHHHHHhc--CCCEEEEecccc
Confidence 4679999999999999999999985 456677777666543211 0111122233332 346999999954
No 428
>PRK12377 putative replication protein; Provisional
Probab=98.26 E-value=2.6e-06 Score=86.43 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=47.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccchH--HHHHHHHHHHHhcCCcEEEEcccccc
Q 005014 154 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE--SNLRKAFEEAEKNAPSIIFIDEIDSI 225 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~~--~~l~~vf~~a~~~~p~iL~iDEid~l 225 (719)
..+++|+||||||||+||.+++..+ +..++.++..++......... .....+++.. ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 3589999999999999999999887 566777777777654321110 0112233332 45679999999765
No 429
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.25 E-value=3.3e-06 Score=98.21 Aligned_cols=164 Identities=20% Similarity=0.168 Sum_probs=92.1
Q ss_pred cccccHHHHHHhhhccccCCCChhhhh--------hhcCCCCcceeeecCCCCchhHHHHHHHHHhC-------CeEEEE
Q 005014 394 DIGGLENVKRELQETVQYPVEHPEKFE--------KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISV 458 (719)
Q Consensus 394 ~i~g~~~~k~~l~~~i~~~~~~~~~~~--------~~~~~~~~gill~GppGtGKT~la~~la~~~~-------~~~i~v 458 (719)
.|.|.+.+|+.+.-.+........... ...++...++||.|.||||||.+|++++.... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 366888898887544332221100000 01233334699999999999999999998643 233333
Q ss_pred eccchhhhccCC-chhhH--HHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-------
Q 005014 459 KGPELLTMWFGE-SEANV--REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS------- 528 (719)
Q Consensus 459 ~~~~l~~~~~g~-se~~i--~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~------- 528 (719)
.+..... +.+. +.... .-.+..|. -.+++|||++.+. ......|+..|+.-.
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkms--------------~~~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDELDKCH--------------NESRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEcC---CCeEEecchhhCC--------------HHHHHHHHHHHhCCEEEEecCC
Confidence 2222111 0000 00000 00111122 2499999999973 234455666664321
Q ss_pred ----CCCcEEEEEecCCCC-------------CCCcccCCCCCcceEE-EeCCCCHHHHHHHHHHHh
Q 005014 529 ----AKKTVFIIGATNRPD-------------IIDPALLRPGRLDQLI-YIPLPDEESRLQIFKACL 577 (719)
Q Consensus 529 ----~~~~v~vi~atn~~~-------------~ld~allrpgRf~~~i-~~~~p~~~~r~~Il~~~~ 577 (719)
-..+.-||||+|..+ .|.++++. |||.+. .++.|+.+.=..|.++.+
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 124688999999742 46789998 999765 456777666555554444
No 430
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.24 E-value=9.4e-06 Score=95.56 Aligned_cols=151 Identities=26% Similarity=0.383 Sum_probs=92.2
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhh
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 193 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~ 193 (719)
..|+++.|.+..++.+.+.+.... ....+|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 467789999998888877766421 234579999999999999999998754 568999999765321
Q ss_pred -----ccc--------chHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc--------
Q 005014 194 -----LAG--------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 252 (719)
Q Consensus 194 -----~~g--------~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-------- 252 (719)
..| ....... .|+.+ ...+||||||+.+... +...|+..++...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g-~le~a---~~GtL~Ldei~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIG-RFELA---DKSSLFLDEVGDMPLE-----------LQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhh-HHHhc---CCCeEEEechhhCCHH-----------HHHHHHHHHHhCCEEeCCCCC
Confidence 111 0111121 23333 3469999999988532 3344555554311
Q ss_pred -CCCcEEEEEecCCCC-------CCCHHhhccCCCceEEEeCCCChHHHHHH
Q 005014 253 -SRAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLEV 296 (719)
Q Consensus 253 -~~~~vivI~atn~~~-------~ld~al~r~~Rf~~~i~i~~P~~~~R~~i 296 (719)
....+-+|++|+..- .+...+.. |+ ..+.+..|...+|.+-
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~D 555 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPED 555 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHhH
Confidence 123567888876531 11222211 22 2456777777777653
No 431
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.24 E-value=7.9e-06 Score=75.35 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 148 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 148 ~l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
++.+.++..++|.||+|||||||.+.+|....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 45678899999999999999999999998753
No 432
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.24 E-value=6.9e-06 Score=86.98 Aligned_cols=104 Identities=19% Similarity=0.348 Sum_probs=62.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccc---hHHHHHHHHHHHHhcCCcEEEEccccccCC
Q 005014 154 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~---~~~~l~~vf~~a~~~~p~iL~iDEid~l~~ 227 (719)
..+++|+||+|+|||+|+.++|.++ +..+++++..++....... ........++.. ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 3789999999999999999999986 6678888888776543211 001111113332 2346999999976532
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCC
Q 005014 228 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 268 (719)
Q Consensus 228 ~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ 268 (719)
. ......|..+++.......-++|.+...+..
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~e 292 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKKMIISTNLSLEE 292 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
Confidence 2 1123456666665443333344433334433
No 433
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.24 E-value=2.9e-06 Score=95.52 Aligned_cols=97 Identities=31% Similarity=0.448 Sum_probs=65.5
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhh
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 193 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~ 193 (719)
..|+++.|.+..++++++.+...- ....+|||+|++||||+++|++|-... +.+|+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 357789999998888887775411 234579999999999999999997654 568999999765321
Q ss_pred c-----ccchH--------HHHHHHHHHHHhcCCcEEEEccccccCC
Q 005014 194 L-----AGESE--------SNLRKAFEEAEKNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 194 ~-----~g~~~--------~~l~~vf~~a~~~~p~iL~iDEid~l~~ 227 (719)
. .|... ..-...|+.+. ...||||||+.|..
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~ 321 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPL 321 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCH
Confidence 1 11000 00112333332 35899999998853
No 434
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.23 E-value=4.9e-06 Score=94.34 Aligned_cols=150 Identities=27% Similarity=0.370 Sum_probs=90.7
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhc
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL 194 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~ 194 (719)
.+.++.|.+..++++.+.+... ...+.+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5667888888888887777542 1234589999999999999999998774 4689999998763211
Q ss_pred -----ccchH-------HHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---------C
Q 005014 195 -----AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 253 (719)
Q Consensus 195 -----~g~~~-------~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~---------~ 253 (719)
.|... ......|+.+ ....||||||+.+... +...|+..++.-. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-----------LQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-----------HHHHHHHHHhcCCEeeCCCCcce
Confidence 11000 0000123333 3458999999988632 2344555554211 1
Q ss_pred CCcEEEEEecCCCC-------CCCHHhhccCCCceEEEeCCCChHHHHH
Q 005014 254 RAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 295 (719)
Q Consensus 254 ~~~vivI~atn~~~-------~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 295 (719)
...+-+|++|+..- .+.+.|.. |+. .+.+.+|...+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchh
Confidence 13567788887531 22333322 332 34566777776654
No 435
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.23 E-value=6.6e-06 Score=83.51 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=99.0
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--E----EEEeccchh
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--F----ISVKGPELL 464 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~--~----i~v~~~~l~ 464 (719)
...++.+.+++...+.+.. +.....++|+|||||||||+...+.|..+-.+ + ..++.++=.
T Consensus 39 ~l~dv~~~~ei~st~~~~~-------------~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r 105 (360)
T KOG0990|consen 39 FLGIVIKQEPIWSTENRYS-------------GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR 105 (360)
T ss_pred hhhhHhcCCchhhHHHHhc-------------cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc
Confidence 4556666666555555442 22222379999999999999999999886442 1 112222211
Q ss_pred hhccCCchhhHHHHHHHHHh-------CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 465 TMWFGESEANVREIFDKARQ-------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~-------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
+ . ...+.-...|..++. ..+..+++||+|.+.. ...|+|-..+..+.. ++-++.
T Consensus 106 g--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~--------------~AQnALRRviek~t~--n~rF~i 166 (360)
T KOG0990|consen 106 G--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR--------------DAQNALRRVIEKYTA--NTRFAT 166 (360)
T ss_pred C--C-cchHHHHHHHHhhccceeccccCceeEEEecchhHhhH--------------HHHHHHHHHHHHhcc--ceEEEE
Confidence 1 0 112233456666653 3678999999999753 223444444444433 344557
Q ss_pred ecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC
Q 005014 538 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS 583 (719)
Q Consensus 538 atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~ 583 (719)
.+|.|..+-|++.. ||. .+.|.+.+......++.+.+...+..
T Consensus 167 i~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 167 ISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred eccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhh
Confidence 78999999999998 887 66777777777777777777654443
No 436
>PLN03073 ABC transporter F family; Provisional
Probab=98.23 E-value=2.3e-06 Score=100.17 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=26.2
Q ss_pred hhCCCCCceEEEECCCCCChHHHHHHHHHH
Q 005014 148 SIGVKPPKGILLYGPPGSGKTLIARAVANE 177 (719)
Q Consensus 148 ~l~~~~~~~vLL~GppGtGKTtla~~la~~ 177 (719)
++.+.++..+.|+|++|||||||++.|++.
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 345678888999999999999999999974
No 437
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.23 E-value=1.9e-05 Score=83.79 Aligned_cols=160 Identities=26% Similarity=0.415 Sum_probs=98.2
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEec--------
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING-------- 187 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~-------- 187 (719)
.+.|.-+.|.+..+..| .+.--.| .-.++||.|+.|+||||++|+|+..+.-.-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL----~l~av~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLAL----GLNAVDP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHH----hhhhccc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 45566788888654443 2211112 23479999999999999999999998643322222
Q ss_pred -----hh-------------------hhhhcccchHHHH------HHHHH-HH--------HhcCCcEEEEccccccCCC
Q 005014 188 -----PE-------------------IMSKLAGESESNL------RKAFE-EA--------EKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 188 -----~~-------------------l~~~~~g~~~~~l------~~vf~-~a--------~~~~p~iL~iDEid~l~~~ 228 (719)
.. +.+.-.+.++.++ ..+.+ .. ......|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 00 0111112223311 11111 00 11123599999998774
Q ss_pred CCCCchHHHHHHHHHHHHHhhcc-----------cCCCcEEEEEecCCCC-CCCHHhhccCCCceEEEeCCC-ChHHHHH
Q 005014 229 REKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLE 295 (719)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~~l~~~-----------~~~~~vivI~atn~~~-~ld~al~r~~Rf~~~i~i~~P-~~~~R~~ 295 (719)
..++..|++.+..- ....++++|||+|+.+ .|-|.|+. ||...+.+..| +.++|.+
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 45677777766531 2234799999999764 67788876 99999988766 5678888
Q ss_pred HHHHHh
Q 005014 296 VLRIHT 301 (719)
Q Consensus 296 il~~~~ 301 (719)
|.+...
T Consensus 227 Ii~r~~ 232 (423)
T COG1239 227 IIRRRL 232 (423)
T ss_pred HHHHHH
Confidence 886543
No 438
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.23 E-value=1.6e-06 Score=83.80 Aligned_cols=101 Identities=23% Similarity=0.453 Sum_probs=58.3
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccch-HHHHHHHHHHHHhcCCcEEEEccccccCC
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~iL~iDEid~l~~ 227 (719)
..+.+++|+||+|+|||+||.+++.++ +..+.+++..+++....... .......++... .+.+|+|||+.....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~~ 122 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEPL 122 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceeee
Confidence 456799999999999999999998765 67788888888876433211 111223344333 346999999864321
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCC
Q 005014 228 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 265 (719)
Q Consensus 228 ~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~ 265 (719)
. ......|..+++....+.. .+| |||.
T Consensus 123 ------~---~~~~~~l~~ii~~R~~~~~-tIi-TSN~ 149 (178)
T PF01695_consen 123 ------S---EWEAELLFEIIDERYERKP-TII-TSNL 149 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHHT-E-EEE-EESS
T ss_pred ------c---ccccccchhhhhHhhcccC-eEe-eCCC
Confidence 1 1223445555655444333 333 6764
No 439
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.22 E-value=3.5e-06 Score=85.02 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.+++.+.|.||+|||||||++++++.+.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3467788899999999999999999998764
No 440
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.21 E-value=3.5e-06 Score=85.31 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=49.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccch---HHHHHHHHHHHHhcCCcEEEEccccccC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES---ESNLRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~---~~~l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
.+++|+|+||||||+|+.++|..+ +..++.++..++........ ......+++.. ....+|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCCC
Confidence 489999999999999999999987 66778888777765433211 11222344443 246799999998753
No 441
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.20 E-value=3.8e-06 Score=94.07 Aligned_cols=172 Identities=22% Similarity=0.274 Sum_probs=98.3
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhc-----cCCch-------hhHHHHHHHHHhCCCEEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLFF 492 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~se-------~~i~~~f~~a~~~~p~il~i 492 (719)
..++++|++||||+++|+++.... ..+|+.++|..+.... .|... ......|..| ...+|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEE
Confidence 459999999999999999998775 4689999998763221 11100 0001112222 3459999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----C----CCcEEEEEecCCC-------CCCCcccCCCCCcc
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRP-------DIIDPALLRPGRLD 556 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~----~~~v~vi~atn~~-------~~ld~allrpgRf~ 556 (719)
|||+.+. ..+...|+..++.-. . ..++-+|+||+.. ..+.+.|.. |+.
T Consensus 240 ~~i~~l~--------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 303 (445)
T TIGR02915 240 DEIGDLP--------------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA 303 (445)
T ss_pred echhhCC--------------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc
Confidence 9999974 235566666665321 1 1257788888864 233444433 443
Q ss_pred -eEEEeCCCCH--HHHHHHHHHHhccC----CCC-CccCHHHHHHHc-cCC--CHHHHHHHHHHHHHHHHHHH
Q 005014 557 -QLIYIPLPDE--ESRLQIFKACLRKS----PVS-KDVDLRALAKYT-QGF--SGADITEICQRACKYAIREN 618 (719)
Q Consensus 557 -~~i~~~~p~~--~~r~~Il~~~~~~~----~~~-~~~d~~~la~~~-~~~--sg~di~~~~~~A~~~a~~~~ 618 (719)
..|++|+... ++...+++.++++. +.. ..++-+.+.... ..| +-++|++++..|+..+-...
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~~~ 376 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQ 376 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc
Confidence 3455555421 33344556555432 211 223333333322 234 45999999999987664433
No 442
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.20 E-value=5.4e-06 Score=94.76 Aligned_cols=63 Identities=25% Similarity=0.344 Sum_probs=51.2
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhh
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 190 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l 190 (719)
..++++.|.+..++++.+.+.... ....+|||+|++||||+++|++|.... +.+|+.++|..+
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 467889999999888887775422 234579999999999999999998874 468999999766
No 443
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=3.4e-05 Score=82.17 Aligned_cols=128 Identities=14% Similarity=0.196 Sum_probs=86.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCe------------------------EEEEechhhhhhcccchHHHHHHHHHH
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEE 208 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~ 208 (719)
-+..+||+||+|+||+++|.++|..+-+. +..+.... .+. .-.-..++.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKS--SLGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccc--cCCHHHHHHHHHH
Confidence 34579999999999999999999887431 11221100 000 0122345554443
Q ss_pred H----HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEE
Q 005014 209 A----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREID 284 (719)
Q Consensus 209 a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~ 284 (719)
. ......|++||++|.+-. ...+.|++.+++ ...++++|.+|+.++.+-|.+++ |.. .+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~ 163 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LHY 163 (334)
T ss_pred HhhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-ccc
Confidence 3 334456999999998852 245778888886 34567777788889999999998 764 578
Q ss_pred eCCCChHHHHHHHHH
Q 005014 285 IGVPDEVGRLEVLRI 299 (719)
Q Consensus 285 i~~P~~~~R~~il~~ 299 (719)
+++|+.++-.+.|..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 164 LAPPPEQYALTWLSR 178 (334)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999988887777653
No 444
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.19 E-value=1.7e-05 Score=75.22 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=62.6
Q ss_pred eeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhh----------------------ccCC--chhhHHHHHHHH
Q 005014 430 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----------------------WFGE--SEANVREIFDKA 482 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~----------------------~~g~--se~~i~~~f~~a 482 (719)
++++||||+|||++++.++... +.+.+.++....... +... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999886 455555554332210 0000 011112334556
Q ss_pred HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 005014 483 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 543 (719)
Q Consensus 483 ~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~ 543 (719)
....|.++++||+..+................+.+..++..+. ..++.+|++++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6778899999999998754221000111223344444444443 23556666666554
No 445
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.18 E-value=1.3e-05 Score=87.22 Aligned_cols=155 Identities=25% Similarity=0.399 Sum_probs=93.5
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhc
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL 194 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~ 194 (719)
...++.|....++++++.+..- ....-.|||+|++||||-.+||+|-... +.+|+.+||..+....
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4667899999999998877541 1233479999999999999999997765 5699999996553221
Q ss_pred -----cc----ch---HHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHH-hhccc----CCCcE
Q 005014 195 -----AG----ES---ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTL-MDGLK----SRAHV 257 (719)
Q Consensus 195 -----~g----~~---~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~-l~~~~----~~~~v 257 (719)
.| .. ..+-...|+.|.. ..||+|||..+... ++.+++..|..- +..+. -+..|
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl~-------~Q~kLLRvLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPLE-------LQVKLLRVLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCHH-------HHHHHHHHHHcCeeEecCCCcccceee
Confidence 11 00 0111224555544 48999999987532 333333333211 11111 12367
Q ss_pred EEEEecCCCCCCCHHhhccCCCc-------eEEEeCCCChHHHHHH
Q 005014 258 IVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEV 296 (719)
Q Consensus 258 ivI~atn~~~~ld~al~r~~Rf~-------~~i~i~~P~~~~R~~i 296 (719)
-||++||.. +...+.. |+|- ..+.+..|...+|.+-
T Consensus 278 RiIaaT~~d--L~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~ED 320 (464)
T COG2204 278 RIIAATNRD--LEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKED 320 (464)
T ss_pred EEEeecCcC--HHHHHHc-CCcHHHHHhhhccceecCCcccccchh
Confidence 899999864 3222221 2332 3456777877777653
No 446
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.18 E-value=3.8e-06 Score=86.82 Aligned_cols=140 Identities=19% Similarity=0.284 Sum_probs=76.5
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCe---EEEEechhhhhhcccchHHHHHHHHHHH-----------HhcCCcEE
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETGAF---FFCINGPEIMSKLAGESESNLRKAFEEA-----------EKNAPSII 217 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~~~---~i~v~~~~l~~~~~g~~~~~l~~vf~~a-----------~~~~p~iL 217 (719)
..+.++||+||+|||||++++..-..+... ...++++... +...+..+++.. ..+...++
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 346789999999999999998876655432 2334433211 122232222211 12345799
Q ss_pred EEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-------CCcEEEEEecCCCC---CCCHHhhccCCCceEEEeCC
Q 005014 218 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-------RAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGV 287 (719)
Q Consensus 218 ~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~-------~~~vivI~atn~~~---~ld~al~r~~Rf~~~i~i~~ 287 (719)
||||++.-.++..+.. ..-.+++|+++.-.-+.. -..+.++|+++++. .+++.+. |....+.++.
T Consensus 105 fiDDlN~p~~d~ygtq--~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~---r~f~i~~~~~ 179 (272)
T PF12775_consen 105 FIDDLNMPQPDKYGTQ--PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFL---RHFNILNIPY 179 (272)
T ss_dssp EEETTT-S---TTS----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHH---TTEEEEE---
T ss_pred EecccCCCCCCCCCCc--CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHh---hheEEEEecC
Confidence 9999997665543322 222445555432211111 12577888888653 3566666 4557889999
Q ss_pred CChHHHHHHHHHHhc
Q 005014 288 PDEVGRLEVLRIHTK 302 (719)
Q Consensus 288 P~~~~R~~il~~~~~ 302 (719)
|+.+....|+...+.
T Consensus 180 p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 180 PSDESLNTIFSSILQ 194 (272)
T ss_dssp -TCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 999999888876543
No 447
>PF05729 NACHT: NACHT domain
Probab=98.17 E-value=1.7e-05 Score=75.49 Aligned_cols=140 Identities=21% Similarity=0.313 Sum_probs=74.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHhC---------CeEEEEechhhhhhcc------------cchHHHHHHHH-HHHHhcC
Q 005014 156 GILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEIMSKLA------------GESESNLRKAF-EEAEKNA 213 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~---------~~~i~v~~~~l~~~~~------------g~~~~~l~~vf-~~a~~~~ 213 (719)
-++|+|+||+|||++++.++..+. ..++.+.+.+...... ..........+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987652 1223344333221100 00111111111 1223455
Q ss_pred CcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc-ccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHH
Q 005014 214 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292 (719)
Q Consensus 214 p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~-~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~ 292 (719)
..+++||.+|.+...... .........+..++.. ...+.++++ ++.+ ..... +.+...-...+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~lii--t~r~-~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLII--TSRP-RAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEE--EEcC-ChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 678999999998764332 1122333444455544 222333333 3332 22211 33211222568888889999
Q ss_pred HHHHHHHHhc
Q 005014 293 RLEVLRIHTK 302 (719)
Q Consensus 293 R~~il~~~~~ 302 (719)
..++++.+++
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9998887654
No 448
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.16 E-value=1.7e-06 Score=80.23 Aligned_cols=106 Identities=27% Similarity=0.460 Sum_probs=63.4
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCC---eEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccC
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 503 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~---~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~ 503 (719)
...++|+|++||||+++|+++...... +|+.+++..+- ..+++.+ ....+||+|+|.+..
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~--- 83 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP--- 83 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H---
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH---
Confidence 345999999999999999999988653 55555554421 4466665 445999999999843
Q ss_pred CCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC-CC------CCCcccCCCCCcc-eEEEeCC
Q 005014 504 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-PD------IIDPALLRPGRLD-QLIYIPL 563 (719)
Q Consensus 504 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~-~~------~ld~allrpgRf~-~~i~~~~ 563 (719)
.....|+..++... ..++-+|++|.. ++ .+++.|.. ||. ..|++|+
T Consensus 84 -----------~~Q~~L~~~l~~~~-~~~~RlI~ss~~~l~~l~~~~~~~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 84 -----------EAQRRLLDLLKRQE-RSNVRLIASSSQDLEELVEEGRFSPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp -----------HHHHHHHHHHHHCT-TTTSEEEEEECC-CCCHHHHSTHHHHHHH--HCSTCEEEE--
T ss_pred -----------HHHHHHHHHHHhcC-CCCeEEEEEeCCCHHHHhhccchhHHHHH--HhCCCEEeCCC
Confidence 34455555555433 233445555543 22 34555554 554 4556664
No 449
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.15 E-value=9.8e-06 Score=91.91 Aligned_cols=153 Identities=23% Similarity=0.361 Sum_probs=91.2
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhh
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM 191 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~ 191 (719)
...+|+++.|.+..++++.+.+...- ....+|+|+|++||||+++|+++-... ..+|+.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 35688999999988888776664311 123469999999999999999986553 3689999997763
Q ss_pred hhc-----ccchH-------HHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-------
Q 005014 192 SKL-----AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK------- 252 (719)
Q Consensus 192 ~~~-----~g~~~-------~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~------- 252 (719)
... .|... ......|+.+ ....||||||+.+.+. +...|+..+..-.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH-----------HHHHHHHHHhcCCcccCCCC
Confidence 211 11000 0001123333 2458999999988533 2234555553311
Q ss_pred --CCCcEEEEEecCCC-C------CCCHHhhccCCCceEEEeCCCChHHHHH
Q 005014 253 --SRAHVIVIGATNRP-N------SIDPALRRFGRFDREIDIGVPDEVGRLE 295 (719)
Q Consensus 253 --~~~~vivI~atn~~-~------~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 295 (719)
....+-+|++|+.+ . .+.+.|.. |+.. +.+..|...+|.+
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~~ 382 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRPQ 382 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccChh
Confidence 11356677777643 1 23344443 4432 5666676666653
No 450
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.14 E-value=1.6e-05 Score=93.05 Aligned_cols=152 Identities=24% Similarity=0.357 Sum_probs=89.5
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhh
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 192 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~ 192 (719)
..+|+++.|.+..++++.+.+.... ....+|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3468888888888887776665422 234569999999999999999998765 46899999976532
Q ss_pred -----hcccch----HHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----C----C
Q 005014 193 -----KLAGES----ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----R 254 (719)
Q Consensus 193 -----~~~g~~----~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-----~----~ 254 (719)
...|.. .......|+. .....||||||+.+... +...|+..++.-. . .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-----------LQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceEE
Confidence 111110 0000001222 23468999999988532 2234555543211 0 1
Q ss_pred CcEEEEEecCCCCCCCHHhhccCCCc-------eEEEeCCCChHHHHH
Q 005014 255 AHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 295 (719)
Q Consensus 255 ~~vivI~atn~~~~ld~al~r~~Rf~-------~~i~i~~P~~~~R~~ 295 (719)
..+.+|++|+.. +...+ ..++|. ..+.+.+|...+|.+
T Consensus 456 ~~~riI~~t~~~--l~~~~-~~~~f~~dL~~~l~~~~i~lPpLreR~~ 500 (638)
T PRK11388 456 VDVRVIATTTAD--LAMLV-EQNRFSRQLYYALHAFEITIPPLRMRRE 500 (638)
T ss_pred eeEEEEEeccCC--HHHHH-hcCCChHHHhhhhceeEEeCCChhhhhh
Confidence 256688887753 11111 112331 235667777777753
No 451
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=1.4e-05 Score=84.82 Aligned_cols=131 Identities=20% Similarity=0.293 Sum_probs=84.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCe-------------------------EEEEechh---hhhhc-ccchHHHHH
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAF-------------------------FFCINGPE---IMSKL-AGESESNLR 203 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~-------------------------~i~v~~~~---l~~~~-~g~~~~~l~ 203 (719)
-+..+||+||+|+|||++|+.+|+.+.+. ++.+.... -.++. ..-.-..++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 44579999999999999999999986431 22232210 00000 001234566
Q ss_pred HHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCC
Q 005014 204 KAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRF 279 (719)
Q Consensus 204 ~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf 279 (719)
.+.+.+.. ....|+++|+++.+-+ ...+.|++.++.... .+.+|.+|+.++.+.+.+++ |.
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-----------~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S--Rc 164 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNL-----------QAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS--RC 164 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCH-----------HHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH--Hh
Confidence 66655432 3346888899887742 234567777776542 35556688888899999887 55
Q ss_pred ceEEEeCCCChHHHHHHHHH
Q 005014 280 DREIDIGVPDEVGRLEVLRI 299 (719)
Q Consensus 280 ~~~i~i~~P~~~~R~~il~~ 299 (719)
..+.+++|+.++-.+.|..
T Consensus 165 -~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 165 -RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -hhhcCCCCCHHHHHHHHHh
Confidence 6678899999887777753
No 452
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.14 E-value=4.6e-05 Score=85.44 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=49.3
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
+..+.+.+|+.-..+-+++++..+.-.+. +-.+.+-+||+|||||||||+++.||++++..+...
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 44566778888888878888887764221 223445789999999999999999999999877654
No 453
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.14 E-value=4.6e-06 Score=87.99 Aligned_cols=108 Identities=22% Similarity=0.348 Sum_probs=66.6
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--EEEEechhhhh-------------------------------h--
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------------------------------K-- 193 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~--~i~v~~~~l~~-------------------------------~-- 193 (719)
+.+.++..+.|.||+||||||++|+||+.-... -+.+++.++.+ +
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 346777789999999999999999999864211 12233221100 0
Q ss_pred --cc-cch--------------------------HHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHH
Q 005014 194 --LA-GES--------------------------ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 244 (719)
Q Consensus 194 --~~-g~~--------------------------~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 244 (719)
.. .+. .++-|-.+..|....|.+|++||- .+..+..+..++
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP----------lSaLD~kLR~~m 175 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP----------LSALDAKLREQM 175 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc----------ccchhHHHHHHH
Confidence 00 000 122234455666778999999993 333445566667
Q ss_pred HHHhhcccCCCcEEEEEecCCC
Q 005014 245 LTLMDGLKSRAHVIVIGATNRP 266 (719)
Q Consensus 245 ~~~l~~~~~~~~vivI~atn~~ 266 (719)
...+..+.....+.+|-.|++.
T Consensus 176 r~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 176 RKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred HHHHHHHHHhcCCeEEEEECCH
Confidence 7777666666667777777765
No 454
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.14 E-value=5.5e-06 Score=76.77 Aligned_cols=78 Identities=28% Similarity=0.521 Sum_probs=50.2
Q ss_pred chHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC---eEEEEechhhhhhcccchHH
Q 005014 124 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGPEIMSKLAGESES 200 (719)
Q Consensus 124 G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~---~~i~v~~~~l~~~~~g~~~~ 200 (719)
|-...++++++.+.... ....+|+|+|++||||+++|++|....+. +++.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~a-----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLA-----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHH-----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCHHHHHHHHHHHHHh-----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 33455666665554311 23457999999999999999999887653 45555655432
Q ss_pred HHHHHHHHHHhcCCcEEEEccccccC
Q 005014 201 NLRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 201 ~l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
...++.+ ....|||+|+|.+.
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-
T ss_pred --HHHHHHc---CCCEEEECChHHCC
Confidence 2344443 55699999999885
No 455
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.13 E-value=3.7e-06 Score=81.07 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=25.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHH
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANE 177 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~ 177 (719)
+.+.++.-+.|+||+|||||||+|++...
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34678888999999999999999999754
No 456
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=6e-05 Score=79.31 Aligned_cols=127 Identities=15% Similarity=0.213 Sum_probs=86.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCe-----------------------EEEEechhhhhhcccchHHHHHHHHHHHH
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAF-----------------------FFCINGPEIMSKLAGESESNLRKAFEEAE 210 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~-----------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~ 210 (719)
+..+||+||.|+||+++|+.+|..+-+. ++.+.... .++. -.-..++.+.+...
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~~~ 101 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRLAQ 101 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHHHh
Confidence 4579999999999999999999876331 22221110 0000 12234555444332
Q ss_pred ----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeC
Q 005014 211 ----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIG 286 (719)
Q Consensus 211 ----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~ 286 (719)
.+...|++||++|.+.. ...+.|++.+++- ..++++|..|+.++.+-|.+++ |. ..+.++
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~ 165 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEP--APNCLFLLVTHNQKRLLPTIVS--RC-QQWVVT 165 (319)
T ss_pred hCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--cc-eeEeCC
Confidence 23346999999998842 2346788888863 3467777788889999999998 77 578999
Q ss_pred CCChHHHHHHHHH
Q 005014 287 VPDEVGRLEVLRI 299 (719)
Q Consensus 287 ~P~~~~R~~il~~ 299 (719)
.|+.++-.+.|..
T Consensus 166 ~~~~~~~~~~L~~ 178 (319)
T PRK06090 166 PPSTAQAMQWLKG 178 (319)
T ss_pred CCCHHHHHHHHHH
Confidence 9999888887754
No 457
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.12 E-value=1.1e-05 Score=91.03 Aligned_cols=170 Identities=24% Similarity=0.315 Sum_probs=102.0
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhc-----cCCchh-------hHHHHHHHHHhCCCEEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESEA-------NVREIFDKARQSAPCVLFF 492 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~se~-------~i~~~f~~a~~~~p~il~i 492 (719)
..+++.|++|||||++|+++.... +.+|+.++|+.+.... .|.... .....|..+ ....+||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l 238 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFL 238 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEE
Confidence 459999999999999999999876 4689999998763211 111100 000112222 2358999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----C----CCcEEEEEecCCC-------CCCCcccCCCCCc-
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRP-------DIIDPALLRPGRL- 555 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~----~~~v~vi~atn~~-------~~ld~allrpgRf- 555 (719)
|||+.+.. .+...|+..++... + ..++-||+||+.. ..+.+.|.. ||
T Consensus 239 ~~i~~l~~--------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 302 (469)
T PRK10923 239 DEIGDMPL--------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN 302 (469)
T ss_pred eccccCCH--------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc
Confidence 99999742 34556666665421 1 1246788888763 234455555 66
Q ss_pred ceEEEeCCCC--HHHHHHHHHHHhccC----CCC-CccCHHHHHHHc-cCCC--HHHHHHHHHHHHHHHHH
Q 005014 556 DQLIYIPLPD--EESRLQIFKACLRKS----PVS-KDVDLRALAKYT-QGFS--GADITEICQRACKYAIR 616 (719)
Q Consensus 556 ~~~i~~~~p~--~~~r~~Il~~~~~~~----~~~-~~~d~~~la~~~-~~~s--g~di~~~~~~A~~~a~~ 616 (719)
...|++|+.. .++...+++.++++. ... ..+.-+.+.... ..|. -++|+++++.|+..+-.
T Consensus 303 ~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~~ 373 (469)
T PRK10923 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAG 373 (469)
T ss_pred ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 3566677653 255666777776432 111 123333333221 2354 49999999999886643
No 458
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=4.7e-05 Score=80.20 Aligned_cols=130 Identities=18% Similarity=0.279 Sum_probs=84.7
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCe---------------------EEEEe-chhhhhh--cccchHHHHHHHHHHH
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAF---------------------FFCIN-GPEIMSK--LAGESESNLRKAFEEA 209 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~---------------------~i~v~-~~~l~~~--~~g~~~~~l~~vf~~a 209 (719)
+..+||+||+|+||+++|.++|..+-+. +..+. .++-.+. ...-.-..++.+.+..
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 3469999999999999999999876431 11111 0000000 0001234455555543
Q ss_pred Hh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEe
Q 005014 210 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 285 (719)
Q Consensus 210 ~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i 285 (719)
.. ....|++||++|.+.. ...+.|++.++.-. .++++|.+++.++.+-|.+++ |+ ..+.+
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp--~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPS--PGRYLWLISAQPARLPATIRS--RC-QRLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCC--CCCeEEEEECChhhCchHHHh--hh-eEeeC
Confidence 22 2346999999998842 23467888888744 355666677888999999998 77 66889
Q ss_pred CCCChHHHHHHHHH
Q 005014 286 GVPDEVGRLEVLRI 299 (719)
Q Consensus 286 ~~P~~~~R~~il~~ 299 (719)
+.|+.++-.+.|..
T Consensus 170 ~~~~~~~~~~~L~~ 183 (319)
T PRK08769 170 KLPPAHEALAWLLA 183 (319)
T ss_pred CCcCHHHHHHHHHH
Confidence 99999887777753
No 459
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.11 E-value=9.7e-06 Score=77.43 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=51.7
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--EEEEechhhh--------hhccc-----chHHHHHHHHHHHHhcC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------SKLAG-----ESESNLRKAFEEAEKNA 213 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~--~i~v~~~~l~--------~~~~g-----~~~~~l~~vf~~a~~~~ 213 (719)
+.+.++..+.|.||+|+|||||++.+++..... -+.+++.++. ....+ ...++-+..+..+....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 456788999999999999999999999876321 1334432221 11111 12334556677777889
Q ss_pred CcEEEEcccccc
Q 005014 214 PSIIFIDEIDSI 225 (719)
Q Consensus 214 p~iL~iDEid~l 225 (719)
|.++++||-..-
T Consensus 101 p~illlDEP~~~ 112 (163)
T cd03216 101 ARLLILDEPTAA 112 (163)
T ss_pred CCEEEEECCCcC
Confidence 999999996543
No 460
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.10 E-value=1.1e-05 Score=89.71 Aligned_cols=125 Identities=22% Similarity=0.376 Sum_probs=74.3
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeE--EEEechhhhh---h-----------c----ccchHH-HH-------
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETGAFF--FCINGPEIMS---K-----------L----AGESES-NL------- 202 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~~~~--i~v~~~~l~~---~-----------~----~g~~~~-~l------- 202 (719)
+..+.+++|+||||||||++++.+++.+...- ..+.+..+.+ . + ...+.. .+
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~ 286 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPG 286 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceeh
Confidence 45667899999999999999999998764210 1111111110 0 0 000000 01
Q ss_pred HHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCcEEEEEecCCCC----
Q 005014 203 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---- 267 (719)
Q Consensus 203 ~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-----------~~~~vivI~atn~~~---- 267 (719)
...+..|. ..+||+||++.+. ..+...|++.|+.-. ...++.+|+|+|+..
T Consensus 287 pG~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 287 PGEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 11233332 3599999997653 234556666664321 134688999999742
Q ss_pred -----------------CCCHHhhccCCCceEEEeCCCChH
Q 005014 268 -----------------SIDPALRRFGRFDREIDIGVPDEV 291 (719)
Q Consensus 268 -----------------~ld~al~r~~Rf~~~i~i~~P~~~ 291 (719)
.++..++. ||+..+.++.|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 24556665 99999999988876
No 461
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.10 E-value=1.7e-05 Score=79.17 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=51.9
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhh-h-------hcc---------------cchHHHHH
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM-S-------KLA---------------GESESNLR 203 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~-~-------~~~---------------g~~~~~l~ 203 (719)
|+.++.-++|+||||||||+++..++... +...++++...+. . ... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 67888899999999999999999887643 5567777765310 0 000 00111233
Q ss_pred HHHHHHHhcCCcEEEEccccccCC
Q 005014 204 KAFEEAEKNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 204 ~vf~~a~~~~p~iL~iDEid~l~~ 227 (719)
.+.+......+.+++||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 344445555789999999998764
No 462
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.10 E-value=1.2e-05 Score=84.39 Aligned_cols=71 Identities=25% Similarity=0.483 Sum_probs=48.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccchH-HHHHHHHHHHHhcCCcEEEEcccccc
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSI 225 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~iL~iDEid~l 225 (719)
.+++++|+||+|||||+|+.++|.++ |..+..+..++++........ ..+...++.. ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 45799999999999999999999987 666777777776554322111 1122333332 34569999998754
No 463
>PRK15115 response regulator GlrR; Provisional
Probab=98.09 E-value=1.2e-05 Score=90.04 Aligned_cols=217 Identities=19% Similarity=0.301 Sum_probs=113.5
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhcc-----CCchh-------hHHHHHHHHHhCCCEEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF-----GESEA-------NVREIFDKARQSAPCVLFF 492 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~-----g~se~-------~i~~~f~~a~~~~p~il~i 492 (719)
..++|+|++|||||++|+++.... +.+|+.++|..+..... |.... ....+|..+ ....|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 359999999999999999998875 46899999987632211 11000 000122222 2358999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----C----CCcEEEEEecCCCCCCCcccCCCCCcce------
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ------ 557 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~----~~~v~vi~atn~~~~ld~allrpgRf~~------ 557 (719)
|||+.|.. .....|+..++.-. + ..++.+|+||+.. ++..+.+ |+|..
T Consensus 235 ~~i~~l~~--------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l 297 (444)
T PRK15115 235 DEIGDMPA--------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRL 297 (444)
T ss_pred EccccCCH--------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhh
Confidence 99999743 34556666665321 1 1257888999863 3333322 45521
Q ss_pred -EEEeCCCCHHHH----HHHHHHHhccC----CCC-CccCH---HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 558 -LIYIPLPDEESR----LQIFKACLRKS----PVS-KDVDL---RALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 624 (719)
Q Consensus 558 -~i~~~~p~~~~r----~~Il~~~~~~~----~~~-~~~d~---~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~ 624 (719)
.+.+..|...+| ..+++.++++. ... ..++- ..|....-.-+.++++++++.|+..+-...+.....
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~i~~~~l 377 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALV 377 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCccChhhh
Confidence 233444444444 34555665432 111 12333 333333322345899999999887653322322111
Q ss_pred HHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHH
Q 005014 625 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDA 666 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~ 666 (719)
...... ...... ........+..+-+..||+.....+++.
T Consensus 378 ~~~~~~-~~~~~~-~~~~~~~~~E~~~i~~al~~~~gn~~~a 417 (444)
T PRK15115 378 EQALEG-ENTALP-TFVEARNQFELNYLRKLLQITKGNVTHA 417 (444)
T ss_pred hhhhcc-cccccc-cHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 000000 000000 0000112455667778888887776654
No 464
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.09 E-value=3e-06 Score=85.73 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=26.6
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+..++-+-|.||+|+||||++|.||+..
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 456778889999999999999999999875
No 465
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.08 E-value=8.1e-06 Score=86.21 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=57.9
Q ss_pred cccchHHHHHHHHHHHHcccCChhhHhhhCC-CCCceEEEECCCCCChHHHHHHHHHHhCC-------eEEEEec----h
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGA-------FFFCING----P 188 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~-~~~~~vLL~GppGtGKTtla~~la~~l~~-------~~i~v~~----~ 188 (719)
++.|+++.+.++.+.+.... .|. ...+.++|+|||||||||||++|++.++. +++.+.+ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 79999999888887765422 122 24467899999999999999999999976 7777776 4
Q ss_pred hhhhhcccchHHHHHHHHHHH
Q 005014 189 EIMSKLAGESESNLRKAFEEA 209 (719)
Q Consensus 189 ~l~~~~~g~~~~~l~~vf~~a 209 (719)
.+.....+-.....+..|.+.
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCccCCcccCCHHHHHHHHHH
Confidence 444444444455666666443
No 466
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.07 E-value=4.9e-05 Score=75.69 Aligned_cols=150 Identities=20% Similarity=0.332 Sum_probs=96.5
Q ss_pred cceeeecCCCCchhHHHHHHHHHh-CCe--E--------------------------EEEeccchhhhccCCchh-hHHH
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC-QAN--F--------------------------ISVKGPELLTMWFGESEA-NVRE 477 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~-~~~--~--------------------------i~v~~~~l~~~~~g~se~-~i~~ 477 (719)
.++++|||+|+||-|.+.++-+++ |.. - +.++++| .|...+ -+.+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQe 109 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQE 109 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHH
Confidence 469999999999999999998885 211 1 1122222 233222 2344
Q ss_pred HHHHHHhC---------CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc
Q 005014 478 IFDKARQS---------APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPA 548 (719)
Q Consensus 478 ~f~~a~~~---------~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~a 548 (719)
+.+...+. ...+++|-|+|.|.. .....|-..|+...+ +.-+|..+|....+-++
T Consensus 110 llKevAQt~qie~~~qr~fKvvvi~ead~LT~--------------dAQ~aLRRTMEkYs~--~~RlIl~cns~SriIep 173 (351)
T KOG2035|consen 110 LLKEVAQTQQIETQGQRPFKVVVINEADELTR--------------DAQHALRRTMEKYSS--NCRLILVCNSTSRIIEP 173 (351)
T ss_pred HHHHHHhhcchhhccccceEEEEEechHhhhH--------------HHHHHHHHHHHHHhc--CceEEEEecCcccchhH
Confidence 44433222 347999999999853 223334444554433 34567778888888888
Q ss_pred cCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHccCCCHHHHHH
Q 005014 549 LLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITE 605 (719)
Q Consensus 549 llrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-~~~la~~~~~~sg~di~~ 605 (719)
+.+ |+ ..|.+|.|+.++...++...+++.++....+ +..+|+. |+++++.
T Consensus 174 IrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k----S~~nLRr 224 (351)
T KOG2035|consen 174 IRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK----SNRNLRR 224 (351)
T ss_pred Hhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH----hcccHHH
Confidence 887 76 4889999999999999999998877654322 3344443 4456554
No 467
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.05 E-value=1.1e-05 Score=90.71 Aligned_cols=171 Identities=24% Similarity=0.362 Sum_probs=102.6
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhc-----cCCchh----hH---HHHHHHHHhCCCEEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESEA----NV---REIFDKARQSAPCVLFF 492 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~se~----~i---~~~f~~a~~~~p~il~i 492 (719)
..+++.|.+||||+++|+++.... +.+|+.++|..+...+ .|.... .. ...|. ......|||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 234 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFE---QADGGTLFL 234 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEE
Confidence 458999999999999999998875 4689999987763221 121100 00 01121 223468999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----C----CCcEEEEEecCCC-------CCCCcccCCCCCcc
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRP-------DIIDPALLRPGRLD 556 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~----~~~v~vi~atn~~-------~~ld~allrpgRf~ 556 (719)
|||+.+.. .+...|+..++... + ..++-||+||+.. ..+.+.|.. |+.
T Consensus 235 ~ei~~l~~--------------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~ 298 (463)
T TIGR01818 235 DEIGDMPL--------------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN 298 (463)
T ss_pred EchhhCCH--------------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC
Confidence 99999743 33455665554321 1 1246788888763 133344444 554
Q ss_pred -eEEEeCCCC--HHHHHHHHHHHhccC----CCC-CccCHHHHHHHc-cCCCH--HHHHHHHHHHHHHHHHH
Q 005014 557 -QLIYIPLPD--EESRLQIFKACLRKS----PVS-KDVDLRALAKYT-QGFSG--ADITEICQRACKYAIRE 617 (719)
Q Consensus 557 -~~i~~~~p~--~~~r~~Il~~~~~~~----~~~-~~~d~~~la~~~-~~~sg--~di~~~~~~A~~~a~~~ 617 (719)
..|++|+.. .++...+++.++++. +.. ..++-+.+.... .+|.| ++|++++..|+..+-..
T Consensus 299 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~~ 370 (463)
T TIGR01818 299 VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGD 370 (463)
T ss_pred cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 477777765 466777777766443 111 123433333332 24554 99999999998876443
No 468
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.05 E-value=1e-05 Score=90.42 Aligned_cols=167 Identities=22% Similarity=0.298 Sum_probs=93.6
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhc-----cCCchhh-------HHHHHHHHHhCCCEEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESEAN-------VREIFDKARQSAPCVLFF 492 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~se~~-------i~~~f~~a~~~~p~il~i 492 (719)
..++++|.+||||+++|+++.... +.+|+.++|..+.... .|..... ....|. .....+|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEEE
Confidence 459999999999999999998765 4689999998653221 1110000 000111 223569999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----C----CCcEEEEEecCCCCCCCcccCCCCCcc-------
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRPDIIDPALLRPGRLD------- 556 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~----~~~v~vi~atn~~~~ld~allrpgRf~------- 556 (719)
|||+.+.. .....|+..++.-. + ..++-+|+||+.+- .....+|+|.
T Consensus 240 dei~~l~~--------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l 302 (441)
T PRK10365 240 DEIGDISP--------------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRL 302 (441)
T ss_pred eccccCCH--------------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHh
Confidence 99999843 34456666665421 1 12466888887632 1222334553
Q ss_pred --eEEEeCCCCH--HHHHHHHHHHhccC----CCC-CccCHHHHHHHc-cCC--CHHHHHHHHHHHHHHH
Q 005014 557 --QLIYIPLPDE--ESRLQIFKACLRKS----PVS-KDVDLRALAKYT-QGF--SGADITEICQRACKYA 614 (719)
Q Consensus 557 --~~i~~~~p~~--~~r~~Il~~~~~~~----~~~-~~~d~~~la~~~-~~~--sg~di~~~~~~A~~~a 614 (719)
..|.+|+.-. ++...+++.++++. ... ..+.-+.+.... ..| +-++++++++.|+..+
T Consensus 303 ~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 (441)
T ss_pred ccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 3444444421 33455666666432 111 123333333322 234 4489999999887754
No 469
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.04 E-value=3.9e-06 Score=65.29 Aligned_cols=36 Identities=31% Similarity=0.548 Sum_probs=32.8
Q ss_pred cccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 005014 644 VAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 679 (719)
Q Consensus 644 ~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~ 679 (719)
.+.|+++||+.||+.++||||+++|++|++|.++|+
T Consensus 27 ~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 27 EPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 347999999999999999999999999999999985
No 470
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.04 E-value=1.3e-05 Score=84.16 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=26.6
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+..+..+.|.||+||||||++|.||+..
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346778889999999999999999999875
No 471
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.03 E-value=1.6e-05 Score=76.63 Aligned_cols=76 Identities=21% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhCCe--EEEEechhh--hhhcc-cchHHHHHHHHHHHHhcCCcEEEEccccc
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI--MSKLA-GESESNLRKAFEEAEKNAPSIIFIDEIDS 224 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l~~~--~i~v~~~~l--~~~~~-g~~~~~l~~vf~~a~~~~p~iL~iDEid~ 224 (719)
.+.++..+.|.||+|+|||||++.+++..... -+.+++..+ ..... -...++-+..+..+....|.++++||--.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 46788899999999999999999999975321 133333211 01100 11234455556667778899999999654
Q ss_pred c
Q 005014 225 I 225 (719)
Q Consensus 225 l 225 (719)
-
T Consensus 101 ~ 101 (177)
T cd03222 101 Y 101 (177)
T ss_pred c
Confidence 3
No 472
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.03 E-value=8.7e-06 Score=80.20 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=26.2
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+..+.-++|.||+||||||+++.|.+..
T Consensus 22 l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 456788889999999999999999997765
No 473
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.03 E-value=9.1e-06 Score=84.06 Aligned_cols=136 Identities=25% Similarity=0.457 Sum_probs=75.1
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHhC-Ce--EEEEeccchhhhccCCchhhHHHHHHH-----------HHhCCCEEEE
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANECQ-AN--FISVKGPELLTMWFGESEANVREIFDK-----------ARQSAPCVLF 491 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~~-~~--~i~v~~~~l~~~~~g~se~~i~~~f~~-----------a~~~~p~il~ 491 (719)
..+.+||+||+|||||++++.+-..+. .. ...++.+... +...+..+.+. +.....+|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 356799999999999999987665543 22 2233333211 11111111110 1223457999
Q ss_pred EeccchhhcccCCCCCCCCCchHHHHHHHHHH-hcC--CCCC--------CcEEEEEecCCCC---CCCcccCCCCCcce
Q 005014 492 FDELDSIATQRGSSVGDAGGAADRVLNQLLTE-MDG--MSAK--------KTVFIIGATNRPD---IIDPALLRPGRLDQ 557 (719)
Q Consensus 492 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~-ld~--~~~~--------~~v~vi~atn~~~---~ld~allrpgRf~~ 557 (719)
+||+..-.... -+. ...+ +||.+ ||. +.+. .++.+++|+|.+. .+++.|+| .|.
T Consensus 106 iDDlN~p~~d~-------ygt-q~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~- 173 (272)
T PF12775_consen 106 IDDLNMPQPDK-------YGT-QPPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN- 173 (272)
T ss_dssp EETTT-S---T-------TS---HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-
T ss_pred ecccCCCCCCC-------CCC-cCHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-
Confidence 99998754321 111 2222 34433 332 2111 3577889988542 47888887 664
Q ss_pred EEEeCCCCHHHHHHHHHHHhcc
Q 005014 558 LIYIPLPDEESRLQIFKACLRK 579 (719)
Q Consensus 558 ~i~~~~p~~~~r~~Il~~~~~~ 579 (719)
++.++.|+.++...|+..++..
T Consensus 174 i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 174 ILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EEE----TCCHHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHHHHHHhh
Confidence 9999999999999999888754
No 474
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.03 E-value=2.2e-05 Score=74.43 Aligned_cols=72 Identities=31% Similarity=0.451 Sum_probs=46.4
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhc----------------------c--cchHHHHHHHHHHH
Q 005014 157 ILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL----------------------A--GESESNLRKAFEEA 209 (719)
Q Consensus 157 vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~----------------------~--g~~~~~l~~vf~~a 209 (719)
++|+||||+|||+++..++... +...+.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998886 4555555543221100 0 00111122334555
Q ss_pred HhcCCcEEEEccccccCCC
Q 005014 210 EKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 210 ~~~~p~iL~iDEid~l~~~ 228 (719)
....+.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678899999999987643
No 475
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.02 E-value=1.4e-05 Score=80.18 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.5
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
.+.++.-+.|.||+|+|||||++++.+.+
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45677889999999999999999998854
No 476
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.02 E-value=0.00016 Score=72.19 Aligned_cols=147 Identities=22% Similarity=0.288 Sum_probs=93.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCC-eE----------------------------EEEechhhhhhcccchH-HHHHH
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGA-FF----------------------------FCINGPEIMSKLAGESE-SNLRK 204 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~-~~----------------------------i~v~~~~l~~~~~g~~~-~~l~~ 204 (719)
.++++|||+|+||-|.+.++-+++-. -+ +.++.++ .|... --+..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQe 109 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQE 109 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHH
Confidence 47999999999999999988877621 10 1222222 12221 12344
Q ss_pred HHHHHHhcC---------CcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhc
Q 005014 205 AFEEAEKNA---------PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 275 (719)
Q Consensus 205 vf~~a~~~~---------p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r 275 (719)
++++..+.+ ..+++|-|+|.|-. .....|...|+.+....+++ ..+|....+-+++++
T Consensus 110 llKevAQt~qie~~~qr~fKvvvi~ead~LT~-----------dAQ~aLRRTMEkYs~~~RlI--l~cns~SriIepIrS 176 (351)
T KOG2035|consen 110 LLKEVAQTQQIETQGQRPFKVVVINEADELTR-----------DAQHALRRTMEKYSSNCRLI--LVCNSTSRIIEPIRS 176 (351)
T ss_pred HHHHHHhhcchhhccccceEEEEEechHhhhH-----------HHHHHHHHHHHHHhcCceEE--EEecCcccchhHHhh
Confidence 444332222 25888999887743 23456777788776655544 467777788888987
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCC
Q 005014 276 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 322 (719)
Q Consensus 276 ~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 322 (719)
|. .-|.+|.|+.++-..++...+++-.+. ...-+..+++.+.|-
T Consensus 177 --RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 177 --RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRN 221 (351)
T ss_pred --he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhccc
Confidence 55 457899999999999998776544332 233466777776654
No 477
>PF05729 NACHT: NACHT domain
Probab=98.02 E-value=6.4e-05 Score=71.52 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=74.1
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCC--------e-EEEEeccchhhh------------ccCCchhhHHHH-HHHHHhCC
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQA--------N-FISVKGPELLTM------------WFGESEANVREI-FDKARQSA 486 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~--------~-~i~v~~~~l~~~------------~~g~se~~i~~~-f~~a~~~~ 486 (719)
-++|+|+||+|||++++.++..... . .+.+...+.... ........+... ........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3789999999999999999977521 1 223333322110 011111112221 12334556
Q ss_pred CEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcC-CCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCC
Q 005014 487 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 565 (719)
Q Consensus 487 p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~ 565 (719)
..+++||-+|.+...... ....+....+...+.. .....+++|.+.+.....+...+.. . ..+.+++.+
T Consensus 82 ~~llilDglDE~~~~~~~------~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS------QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh------hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCC
Confidence 679999999998653211 0111222222233332 2223333333322222122222222 1 578999999
Q ss_pred HHHHHHHHHHHhcc
Q 005014 566 EESRLQIFKACLRK 579 (719)
Q Consensus 566 ~~~r~~Il~~~~~~ 579 (719)
.+++.++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998864
No 478
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.01 E-value=7.7e-06 Score=95.86 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=106.4
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccC-----C--chhhHHHHH---HHH--HhCCCEEEEEeccch
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG-----E--SEANVREIF---DKA--RQSAPCVLFFDELDS 497 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g-----~--se~~i~~~f---~~a--~~~~p~il~iDEid~ 497 (719)
++++||||.|||+.+.++|.+.+...+.++.++..+++.. + +...+..-| ... ....-.||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 6999999999999999999999999999999988765532 2 122233333 000 011123999999999
Q ss_pred hhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHh
Q 005014 498 IATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 577 (719)
Q Consensus 498 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 577 (719)
+... +.+ .-.-+.+++. ....-+|+++|....-....+. |-...|+|+.|+.++++.-+...+
T Consensus 440 ~~~~------dRg--~v~~l~~l~~-------ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~ 502 (871)
T KOG1968|consen 440 MFGE------DRG--GVSKLSSLCK-------KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSIC 502 (871)
T ss_pred ccch------hhh--hHHHHHHHHH-------hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhh
Confidence 8751 111 1122333333 2334688889887766653333 555789999999998877666666
Q ss_pred ccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 005014 578 RKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYA 614 (719)
Q Consensus 578 ~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a 614 (719)
....+. .+-.++.+.+. +|+||++++..-.++.
T Consensus 503 ~se~~ki~~~~l~~~s~~----~~~DiR~~i~~lq~~~ 536 (871)
T KOG1968|consen 503 KSEGIKISDDVLEEISKL----SGGDIRQIIMQLQFWS 536 (871)
T ss_pred cccceecCcHHHHHHHHh----cccCHHHHHHHHhhhh
Confidence 443322 23345555544 4789999887776663
No 479
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.2e-06 Score=90.68 Aligned_cols=49 Identities=27% Similarity=0.468 Sum_probs=39.8
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
...|.||.|.+..+..+..... -+.++|++||||||||++|+.+.+.+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 3478899999998887765432 356899999999999999999977664
No 480
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=2.4e-05 Score=80.64 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=80.8
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCCeE--------EEEeccchhhhc-cCC----chhhHHHHHHHHH----hCCC
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQANF--------ISVKGPELLTMW-FGE----SEANVREIFDKAR----QSAP 487 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~~~--------i~v~~~~l~~~~-~g~----se~~i~~~f~~a~----~~~p 487 (719)
+.+..+||+||.|+||+++|.++|..+-+.- -.-.-+|+.--+ .|. +-..+|.+-+.+. ....
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 3456799999999999999999998763210 000112221000 011 2334555554443 3445
Q ss_pred EEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCC
Q 005014 488 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 564 (719)
Q Consensus 488 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p 564 (719)
.|++||++|.+. ...-|.||+.|+. +..++++|..|+.++.+-|.+++ |+. .+.|+++
T Consensus 97 kv~ii~~ad~mt--------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT--------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhcC--------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 799999999973 3467899999986 45667888888889999999988 885 7778765
No 481
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.00 E-value=1.2e-05 Score=70.99 Aligned_cols=94 Identities=21% Similarity=0.323 Sum_probs=51.0
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCC
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA 509 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~ 509 (719)
|.||||||+|||++|+.||..+...+-.-....+ |.... -...|+. .... .++++||+.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~v---y~~~~---~~~~w~g-Y~~q-~vvi~DD~~~~~~--------- 63 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSV---YTRNP---GDKFWDG-YQGQ-PVVIIDDFGQDND--------- 63 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcE---EeCCC---ccchhhc-cCCC-cEEEEeecCcccc---------
Confidence 5799999999999999999876422211001111 11000 0112222 2233 4899999877432
Q ss_pred CCchHHHHHHHHHHhcCC---------CCC----CcEEEEEecCC
Q 005014 510 GGAADRVLNQLLTEMDGM---------SAK----KTVFIIGATNR 541 (719)
Q Consensus 510 ~~~~~~~~~~ll~~ld~~---------~~~----~~v~vi~atn~ 541 (719)
.. ......++++.++.. ... ...+||+|||.
T Consensus 64 ~~-~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 64 GY-NYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cc-chHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 11 233566677666543 111 12678888884
No 482
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.00 E-value=3.1e-05 Score=87.01 Aligned_cols=168 Identities=27% Similarity=0.377 Sum_probs=95.2
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhh-----ccCCchh-------hHHHHHHHHHhCCCEEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGESEA-------NVREIFDKARQSAPCVLFF 492 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~-----~~g~se~-------~i~~~f~~a~~~~p~il~i 492 (719)
..++++|++||||+++|+++.... +.+|+.++|..+... ..|.... .....|..| ...+|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 459999999999999999998764 468999999876322 1121100 001122222 2359999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----C----CCcEEEEEecCCCC-------CCCcccCCCCCcc
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRPD-------IIDPALLRPGRLD 556 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~----~~~v~vi~atn~~~-------~ld~allrpgRf~ 556 (719)
|||+.+.. .+...|+..++.-. . ..++-||+|||..- .+.+.+.. |+.
T Consensus 244 d~i~~l~~--------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~ 307 (457)
T PRK11361 244 DEIGEMPL--------------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN 307 (457)
T ss_pred echhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc
Confidence 99999742 34566666665421 1 12478899998641 23333332 332
Q ss_pred eEEEeCCCCHHHH----HHHHHHHhccC----CCC-CccCHHHHHHHc-cCC--CHHHHHHHHHHHHHHHH
Q 005014 557 QLIYIPLPDEESR----LQIFKACLRKS----PVS-KDVDLRALAKYT-QGF--SGADITEICQRACKYAI 615 (719)
Q Consensus 557 ~~i~~~~p~~~~r----~~Il~~~~~~~----~~~-~~~d~~~la~~~-~~~--sg~di~~~~~~A~~~a~ 615 (719)
.+.+..|...+| ..+++.++.+. ... ..++-+.+.... ..| +-+++++++.+|+..+-
T Consensus 308 -~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~ 377 (457)
T PRK11361 308 -VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS 377 (457)
T ss_pred -cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence 234444444443 34555555432 111 123333333322 234 45999999999887653
No 483
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.99 E-value=0.00011 Score=73.88 Aligned_cols=127 Identities=24% Similarity=0.349 Sum_probs=75.0
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 233 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~ 233 (719)
..+-.++||+|||||..++.+|..+|..++..+|.+-++ ...+..+|.-+... .+++++||++.+-..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~----- 99 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEE----- 99 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHH-----
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHH-----
Confidence 457789999999999999999999999999999987543 35566777655443 469999999987422
Q ss_pred hHHHHHHHHHHHHHhhcccCC--------------CcEEEEEecCCC----CCCCHHhhccCCCceEEEeCCCChHHHHH
Q 005014 234 GEVERRIVSQLLTLMDGLKSR--------------AHVIVIGATNRP----NSIDPALRRFGRFDREIDIGVPDEVGRLE 295 (719)
Q Consensus 234 ~~~~~~v~~~L~~~l~~~~~~--------------~~vivI~atn~~----~~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 295 (719)
.-..+..++....+.+..+ ...-+..|.|+. ..+++.++. +.+.+.+..||...-.+
T Consensus 100 --vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~e 174 (231)
T PF12774_consen 100 --VLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIAE 174 (231)
T ss_dssp --HHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHHH
T ss_pred --HHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHHH
Confidence 2222333333332222221 123344455532 467777774 56888898898876555
Q ss_pred HH
Q 005014 296 VL 297 (719)
Q Consensus 296 il 297 (719)
++
T Consensus 175 i~ 176 (231)
T PF12774_consen 175 IL 176 (231)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 484
>PRK06851 hypothetical protein; Provisional
Probab=97.99 E-value=0.00019 Score=76.61 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=25.9
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEec
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 460 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~ 460 (719)
+-++|.|+|||||||+++.++.++ |.......|
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 459999999999999999999886 444444444
No 485
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.99 E-value=3.5e-05 Score=76.23 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=26.4
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|||||||+..+++..
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457788899999999999999999998754
No 486
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.98 E-value=4.5e-05 Score=86.78 Aligned_cols=122 Identities=13% Similarity=0.083 Sum_probs=82.7
Q ss_pred cceeeecCCCCchhHHHHHHHHHhC--CeEEEEeccchhhhccCCc--hhhH--------HHHHHHHHhCCCEEEEEecc
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGES--EANV--------REIFDKARQSAPCVLFFDEL 495 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~--~~~i~v~~~~l~~~~~g~s--e~~i--------~~~f~~a~~~~p~il~iDEi 495 (719)
.|++|.|+.||+||+++++++..+- .+|+.+-.+--....+|.. +..+ .-++..|. ..|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5799999999999999999999874 3776654333333344432 1111 01122222 259999999
Q ss_pred chhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCC---CCCCcccCCCCCcceEEEe
Q 005014 496 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRP---DIIDPALLRPGRLDQLIYI 561 (719)
Q Consensus 496 d~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~atn~~---~~ld~allrpgRf~~~i~~ 561 (719)
..+ ...+++.|+.-|+.-. -..++++|++-|.. ..|.++++- ||+.+|.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 765 3678999999997531 12457788875432 347888998 99999999
Q ss_pred CCCCHHH
Q 005014 562 PLPDEES 568 (719)
Q Consensus 562 ~~p~~~~ 568 (719)
+.|+..+
T Consensus 167 ~~~~~~~ 173 (584)
T PRK13406 167 DGLALRD 173 (584)
T ss_pred CCCChHH
Confidence 9887654
No 487
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.97 E-value=0.00014 Score=79.11 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=95.6
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh-------h-------hccCCchhhHHHHHHHHH-----------
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------T-------MWFGESEANVREIFDKAR----------- 483 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------~-------~~~g~se~~i~~~f~~a~----------- 483 (719)
-+||+||+||||||.++.|+.+++..++....+-.. + .|...... .......+.
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~-fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAV-FESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHH-HHHHHHHHHhhchhhhcccc
Confidence 488999999999999999999999888776532111 0 11111000 011111221
Q ss_pred -hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCC------CCcc
Q 005014 484 -QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRP------GRLD 556 (719)
Q Consensus 484 -~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrp------gRf~ 556 (719)
...+.+|++||+=..+... ..+.+..+|.++-......-|++|.-++.++..++-.+.| -|++
T Consensus 191 ~~~~~~liLveDLPn~~~~d----------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~ 260 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD----------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS 260 (634)
T ss_pred cccCceEEEeeccchhhhhh----------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc
Confidence 1235699999986654321 1234444444444333333333443344445544433321 1554
Q ss_pred eEEEeCCCCHHHHHHHHHHHhccCCCCCc----cCHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 005014 557 QLIYIPLPDEESRLQIFKACLRKSPVSKD----VDLRALAKYTQGFSGADITEICQRACKYAI 615 (719)
Q Consensus 557 ~~i~~~~p~~~~r~~Il~~~~~~~~~~~~----~d~~~la~~~~~~sg~di~~~~~~A~~~a~ 615 (719)
+|.|.|-...-.+..|+..++....... -+...+-.+.. -+|+||+..+....+.+.
T Consensus 261 -~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~-~s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 261 -NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQ-GSGGDIRSAINSLQLSSS 321 (634)
T ss_pred -eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHH-hcCccHHHHHhHhhhhcc
Confidence 7888887777777777777754322211 12222333333 355699999988888763
No 488
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.96 E-value=4.7e-06 Score=80.31 Aligned_cols=45 Identities=31% Similarity=0.545 Sum_probs=33.7
Q ss_pred hhhhhhcCCCCcc--eeeecCCCCchhHHHHHHHHH--hCCeEEEEecc
Q 005014 417 EKFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANE--CQANFISVKGP 461 (719)
Q Consensus 417 ~~~~~~~~~~~~g--ill~GppGtGKT~la~~la~~--~~~~~i~v~~~ 461 (719)
+.++.+++...+| +.++||+|||||||.|++... .....|.+++.
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~ 64 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence 4555566666666 899999999999999999965 34456667664
No 489
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.96 E-value=1.4e-05 Score=77.60 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=27.4
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..++|.||+|+|||||++.+++...
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567888999999999999999999999763
No 490
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.95 E-value=0.00018 Score=72.02 Aligned_cols=28 Identities=46% Similarity=0.828 Sum_probs=25.4
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
..++.+||.||||||||.||-+++.++|
T Consensus 62 maGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred ccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 3578899999999999999999999886
No 491
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.94 E-value=4.5e-05 Score=72.08 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=26.6
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|+||||+++.|..+.
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 456788889999999999999999998775
No 492
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.93 E-value=0.00035 Score=76.49 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=83.6
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhccc
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 502 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r 502 (719)
...+. -++++||-+|||||+++.+.......++.++..|+...+... ...-..+..+.....+.+|+|||+.+-.
T Consensus 34 ~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~-- 108 (398)
T COG1373 34 DLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD-- 108 (398)
T ss_pred ccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh--
Confidence 33443 689999999999999999988875557777766665433211 2222333333333447999999988621
Q ss_pred CCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHH-----------
Q 005014 503 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQ----------- 571 (719)
Q Consensus 503 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~----------- 571 (719)
-.+.+..+. |.... ++++.+++...-....+-.-|||. ..+.+.|.+..+...
T Consensus 109 ----------W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~ 172 (398)
T COG1373 109 ----------WERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKL 172 (398)
T ss_pred ----------HHHHHHHHH---ccccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHH
Confidence 233344443 22221 355544444433334444446895 577888888888765
Q ss_pred --HHHHHhccCCCC
Q 005014 572 --IFKACLRKSPVS 583 (719)
Q Consensus 572 --Il~~~~~~~~~~ 583 (719)
.++.++...+..
T Consensus 173 ~~~f~~Yl~~GGfP 186 (398)
T COG1373 173 ELLFEKYLETGGFP 186 (398)
T ss_pred HHHHHHHHHhCCCc
Confidence 567777554443
No 493
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.93 E-value=3.7e-05 Score=75.74 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+-|+|++|||||||++++++..
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 356788999999999999999999999864
No 494
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.92 E-value=0.00035 Score=78.09 Aligned_cols=154 Identities=22% Similarity=0.306 Sum_probs=93.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC----------CeEEEEechhhhh----------hcccch------HHHHHHHHHH
Q 005014 155 KGILLYGPPGSGKTLIARAVANETG----------AFFFCINGPEIMS----------KLAGES------ESNLRKAFEE 208 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~----------~~~i~v~~~~l~~----------~~~g~~------~~~l~~vf~~ 208 (719)
..+.|.|-||||||.+++.+-.++. ..++.||+-.+.+ .+.|+. -..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 3699999999999999999877553 4578888865532 222321 1122333332
Q ss_pred H-HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc-cCCCcEEEEEecCCCCCCCHHhhc---cCCCc-eE
Q 005014 209 A-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-KSRAHVIVIGATNRPNSIDPALRR---FGRFD-RE 282 (719)
Q Consensus 209 a-~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~-~~~~~vivI~atn~~~~ld~al~r---~~Rf~-~~ 282 (719)
+ ....++|++|||+|.|+...+ .-|.++++.. ....+++||+..|..+.. ..+.. ..|+. .+
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~Q-----------dVlYn~fdWpt~~~sKLvvi~IaNTmdlP-Er~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRSQ-----------DVLYNIFDWPTLKNSKLVVIAIANTMDLP-ERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcccH-----------HHHHHHhcCCcCCCCceEEEEecccccCH-HHHhccchhhhcccee
Confidence 2 224578999999999985432 2344555432 234577788777765432 22211 11322 45
Q ss_pred EEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhC
Q 005014 283 IDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTH 320 (719)
Q Consensus 283 i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~ 320 (719)
+.|.+.+.++..+|+...+.......+.-++.+++...
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVA 608 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVA 608 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHH
Confidence 88999999999999988777664333333444444433
No 495
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.92 E-value=7.9e-05 Score=78.23 Aligned_cols=115 Identities=27% Similarity=0.369 Sum_probs=68.2
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhh----------------hcccchHHHHHHHHHHHH
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----------------KLAGESESNLRKAFEEAE 210 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~----------------~~~g~~~~~l~~vf~~a~ 210 (719)
|++++..++|+||||||||+|+..++... +...++++...... ......++.+..+.+..+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67888889999999999999988765543 55666666533211 001122333444434445
Q ss_pred hcCCcEEEEccccccCCCCCC------CchHHHHHHHHHHHHHhhcccCCCcEEEEEecC
Q 005014 211 KNAPSIIFIDEIDSIAPKREK------THGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 264 (719)
Q Consensus 211 ~~~p~iL~iDEid~l~~~~~~------~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn 264 (719)
...+.+++||-+..+.+..+. .......|.+.+.+..+.......++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 567899999999988764211 111233455545444444444455666665543
No 496
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=0.00017 Score=66.42 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
....|++.|+||+||||++.-++..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 345799999999999999999998774
No 497
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.90 E-value=2.6e-05 Score=72.82 Aligned_cols=75 Identities=20% Similarity=0.345 Sum_probs=49.3
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--EEEEechh---hhhhcccchHHHHHHHHHHHHhcCCcEEEEcccc
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPE---IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 223 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~--~i~v~~~~---l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid 223 (719)
+.+.+++.+.|.||+|+|||||++++++..... -+.+++.. +...+. ..++-+..+..+....|.++++||-.
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 456788999999999999999999999976421 12222210 001111 22344445666677889999999965
Q ss_pred cc
Q 005014 224 SI 225 (719)
Q Consensus 224 ~l 225 (719)
.-
T Consensus 99 ~~ 100 (144)
T cd03221 99 NH 100 (144)
T ss_pred cC
Confidence 43
No 498
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=3.2e-05 Score=74.53 Aligned_cols=109 Identities=23% Similarity=0.333 Sum_probs=62.5
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--EEEEechhhhh-------hccc------------------chHHH
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------KLAG------------------ESESN 201 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~--~i~v~~~~l~~-------~~~g------------------~~~~~ 201 (719)
+.+.++..+.|.||+|+|||||++.+++..... -+.+++..+.. ...+ ...++
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 456788899999999999999999999986321 12333322110 0000 01223
Q ss_pred HHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 202 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 202 l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
-+..+..+....|.++++||--.-+. ......+.+++..+.. . ..+|.+|++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD----------~~~~~~l~~~l~~~~~-~-~tii~~sh~~~~~ 158 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALD----------PETEALILEALRALAK-G-KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCC----------HHHHHHHHHHHHHhcC-C-CEEEEEecCHHHH
Confidence 34445566677899999999554331 1222344444444433 2 3455567765443
No 499
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=6.7e-05 Score=87.48 Aligned_cols=128 Identities=23% Similarity=0.320 Sum_probs=86.3
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCC-CCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhh----
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM---- 191 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~-~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~---- 191 (719)
+.|+|.++++..|.+.+...-. .++- .+.-.++|.||.|+|||-||+++|..+ ...++.++.+++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 4589999999998888865321 1111 345569999999999999999999987 2457888887532
Q ss_pred --hh---cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC---------CCcE
Q 005014 192 --SK---LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS---------RAHV 257 (719)
Q Consensus 192 --~~---~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~---------~~~v 257 (719)
+. |.|. .....+.+..+....+|++|||||.-- ..+...|+.++|..+- -.++
T Consensus 636 ligsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh-----------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 636 LIGSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH-----------PDVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred ccCCCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC-----------HHHHHHHHHHHhcCccccCCCcEeeccce
Confidence 22 3332 234456666666666999999998643 2345556666664321 2378
Q ss_pred EEEEecCCC
Q 005014 258 IVIGATNRP 266 (719)
Q Consensus 258 ivI~atn~~ 266 (719)
+||.|+|.-
T Consensus 703 I~IMTsn~~ 711 (898)
T KOG1051|consen 703 IFIMTSNVG 711 (898)
T ss_pred EEEEecccc
Confidence 889888753
No 500
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.89 E-value=4.8e-05 Score=79.83 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=76.0
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhh----------------ccCCchhhHHHHHHHHH
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----------------WFGESEANVREIFDKAR 483 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~----------------~~g~se~~i~~~f~~a~ 483 (719)
|++..+-++++||||||||+||..++... +...+.++..+..+. .....++.+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666669999999999999988776553 455666655432210 01112334444445556
Q ss_pred hCCCEEEEEeccchhhcccCCCC--C-CCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 005014 484 QSAPCVLFFDELDSIATQRGSSV--G-DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 544 (719)
Q Consensus 484 ~~~p~il~iDEid~l~~~r~~~~--~-~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ 544 (719)
...+.++|+|-+..+.++..-.. + ...+...|.++++|..|.+.....++.+|+|....+.
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~ 194 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREK 194 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceec
Confidence 67889999999999876421110 0 1112344677788887777766677777777544343
Done!