Query 005014
Match_columns 719
No_of_seqs 693 out of 5073
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 12:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1E-122 3E-127 1069.5 43.3 717 1-718 84-805 (806)
2 1ypw_A Transitional endoplasmi 100.0 6.7E-96 2E-100 863.4 29.8 717 1-719 84-806 (806)
3 4b4t_J 26S protease regulatory 100.0 9.3E-58 3.2E-62 486.8 23.0 274 376-674 131-404 (405)
4 4b4t_I 26S protease regulatory 100.0 1.2E-55 4.2E-60 470.7 21.9 261 383-668 172-432 (437)
5 4b4t_L 26S protease subunit RP 100.0 2.2E-54 7.5E-59 468.8 25.7 271 377-672 165-435 (437)
6 4b4t_H 26S protease regulatory 100.0 1.7E-54 5.7E-59 466.6 23.4 267 384-675 200-467 (467)
7 4b4t_M 26S protease regulatory 100.0 6.4E-54 2.2E-58 464.8 26.6 259 382-665 170-428 (434)
8 4b4t_K 26S protease regulatory 100.0 1.3E-53 4.5E-58 462.2 21.9 264 383-671 162-427 (428)
9 3hu3_A Transitional endoplasmi 100.0 3.6E-49 1.2E-53 438.9 36.2 400 1-400 84-484 (489)
10 3cf0_A Transitional endoplasmi 100.0 4.9E-47 1.7E-51 399.4 28.2 300 380-679 2-301 (301)
11 4b4t_J 26S protease regulatory 100.0 1.6E-44 5.5E-49 384.9 27.9 247 113-376 141-390 (405)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.7E-44 1.3E-48 380.5 26.0 292 384-681 3-321 (322)
13 3cf2_A TER ATPase, transitiona 100.0 5.8E-45 2E-49 421.2 21.2 285 385-680 196-491 (806)
14 4b4t_I 26S protease regulatory 100.0 2E-43 6.8E-48 376.8 26.5 249 113-378 175-426 (437)
15 2x8a_A Nuclear valosin-contain 100.0 5.2E-44 1.8E-48 370.1 20.7 266 386-668 3-273 (274)
16 4b4t_M 26S protease regulatory 100.0 1.1E-42 3.7E-47 376.9 25.7 251 113-380 174-427 (434)
17 4b4t_H 26S protease regulatory 100.0 2.1E-42 7.1E-47 372.6 27.5 246 113-375 202-450 (467)
18 4b4t_L 26S protease subunit RP 100.0 8.4E-43 2.9E-47 378.1 24.4 249 113-378 174-425 (437)
19 3eie_A Vacuolar protein sortin 100.0 1.1E-42 3.7E-47 370.0 22.2 294 383-682 8-321 (322)
20 4b4t_K 26S protease regulatory 100.0 1.1E-41 3.9E-46 368.8 26.6 245 113-374 165-413 (428)
21 2qp9_X Vacuolar protein sortin 100.0 6.7E-42 2.3E-46 368.1 23.8 292 385-682 43-354 (355)
22 2zan_A Vacuolar protein sortin 100.0 4.6E-41 1.6E-45 372.0 20.7 292 384-681 125-443 (444)
23 2ce7_A Cell division protein F 100.0 9.8E-38 3.4E-42 343.8 23.7 249 387-661 10-258 (476)
24 3h4m_A Proteasome-activating n 100.0 4.1E-37 1.4E-41 321.5 23.3 273 385-682 9-283 (285)
25 1lv7_A FTSH; alpha/beta domain 100.0 2.3E-36 7.8E-41 310.9 26.9 250 386-661 5-254 (257)
26 3d8b_A Fidgetin-like protein 1 100.0 7.9E-37 2.7E-41 329.2 20.7 276 386-680 77-355 (357)
27 3b9p_A CG5977-PA, isoform A; A 100.0 9.5E-37 3.3E-41 320.7 20.7 278 385-681 13-294 (297)
28 2dhr_A FTSH; AAA+ protein, hex 100.0 8E-36 2.7E-40 330.5 22.3 266 388-679 26-300 (499)
29 3hu3_A Transitional endoplasmi 100.0 2.9E-36 9.9E-41 335.2 18.7 268 388-666 199-466 (489)
30 1ixz_A ATP-dependent metallopr 100.0 4.4E-35 1.5E-39 300.8 22.9 247 384-656 7-253 (254)
31 3vfd_A Spastin; ATPase, microt 100.0 5.9E-35 2E-39 318.6 23.7 279 383-680 105-386 (389)
32 2x8a_A Nuclear valosin-contain 100.0 7.8E-35 2.7E-39 301.3 23.4 262 114-381 4-270 (274)
33 1r6b_X CLPA protein; AAA+, N-t 100.0 3E-34 1E-38 339.7 29.5 435 117-620 183-721 (758)
34 2qz4_A Paraplegin; AAA+, SPG7, 100.0 5.1E-35 1.7E-39 301.5 16.4 248 388-661 1-251 (262)
35 3pxi_A Negative regulator of g 100.0 3.2E-33 1.1E-37 330.3 30.4 442 116-619 176-729 (758)
36 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.4E-33 1.2E-37 296.2 26.5 262 114-378 6-302 (322)
37 1iy2_A ATP-dependent metallopr 100.0 1.8E-33 6.2E-38 292.7 22.9 245 386-656 33-277 (278)
38 3cf0_A Transitional endoplasmi 100.0 3.3E-33 1.1E-37 293.9 22.4 266 113-378 8-284 (301)
39 2r62_A Cell division protease 100.0 3E-35 1E-39 304.5 2.9 255 386-666 4-260 (268)
40 3eie_A Vacuolar protein sortin 100.0 5.1E-32 1.7E-36 287.7 22.6 265 113-380 11-303 (322)
41 1qvr_A CLPB protein; coiled co 100.0 6.1E-32 2.1E-36 322.7 25.3 455 116-620 166-825 (854)
42 2qp9_X Vacuolar protein sortin 100.0 1.5E-31 5.3E-36 287.3 24.5 263 114-379 45-335 (355)
43 2ce7_A Cell division protein F 100.0 3.3E-30 1.1E-34 283.9 26.0 245 115-377 11-258 (476)
44 2zan_A Vacuolar protein sortin 100.0 1.5E-30 5.2E-35 287.7 19.7 228 113-343 127-357 (444)
45 3h4m_A Proteasome-activating n 100.0 2.3E-29 7.7E-34 262.7 24.8 245 114-375 11-258 (285)
46 1ypw_A Transitional endoplasmi 100.0 5.5E-30 1.9E-34 302.0 20.6 265 387-662 198-462 (806)
47 1lv7_A FTSH; alpha/beta domain 100.0 7.2E-29 2.5E-33 254.9 26.2 244 114-375 6-252 (257)
48 2dhr_A FTSH; AAA+ protein, hex 100.0 5E-29 1.7E-33 276.1 21.2 246 115-378 26-274 (499)
49 1ixz_A ATP-dependent metallopr 100.0 7.7E-28 2.6E-32 246.8 25.5 227 114-341 10-239 (254)
50 2qz4_A Paraplegin; AAA+, SPG7, 100.0 8.2E-28 2.8E-32 247.5 19.8 225 116-341 2-232 (262)
51 3b9p_A CG5977-PA, isoform A; A 100.0 8.6E-28 3E-32 252.3 19.9 260 113-380 14-277 (297)
52 3d8b_A Fidgetin-like protein 1 100.0 2.8E-27 9.5E-32 254.6 23.0 260 113-380 77-339 (357)
53 1iy2_A ATP-dependent metallopr 100.0 1.2E-26 4.1E-31 241.2 26.8 226 115-341 35-263 (278)
54 3t15_A Ribulose bisphosphate c 99.9 4.6E-28 1.6E-32 253.3 13.2 176 423-605 32-222 (293)
55 2c9o_A RUVB-like 1; hexameric 99.9 1.1E-28 3.9E-33 274.1 5.0 361 115-659 32-437 (456)
56 3vfd_A Spastin; ATPase, microt 99.9 2.7E-26 9.2E-31 250.1 22.8 258 113-378 108-368 (389)
57 2r62_A Cell division protease 99.9 3.5E-28 1.2E-32 251.4 2.7 249 114-380 5-258 (268)
58 1g41_A Heat shock protein HSLU 99.9 1E-24 3.5E-29 236.6 21.5 390 120-671 15-442 (444)
59 2c9o_A RUVB-like 1; hexameric 99.9 1.1E-26 3.9E-31 258.0 -1.9 205 387-609 31-262 (456)
60 3cmw_A Protein RECA, recombina 99.9 7.9E-25 2.7E-29 268.7 7.1 155 387-542 1014-1218(1706)
61 3t15_A Ribulose bisphosphate c 99.9 3E-22 1E-26 209.2 15.2 174 150-329 32-222 (293)
62 3syl_A Protein CBBX; photosynt 99.9 2.8E-22 9.6E-27 211.4 12.1 216 392-620 30-268 (309)
63 1g41_A Heat shock protein HSLU 99.8 3.2E-22 1.1E-26 217.0 3.6 169 393-573 15-188 (444)
64 3uk6_A RUVB-like 2; hexameric 99.8 3.6E-20 1.2E-24 200.2 16.4 220 388-659 39-330 (368)
65 3m6a_A ATP-dependent protease 99.8 5.6E-21 1.9E-25 216.0 9.3 229 389-658 77-340 (543)
66 1ofh_A ATP-dependent HSL prote 99.8 1.5E-19 5.2E-24 190.2 13.6 245 393-660 15-300 (310)
67 3hws_A ATP-dependent CLP prote 99.8 1.6E-19 5.4E-24 194.8 11.7 222 395-618 17-326 (363)
68 1d2n_A N-ethylmaleimide-sensit 99.8 7E-19 2.4E-23 181.9 15.3 176 423-611 60-246 (272)
69 3pfi_A Holliday junction ATP-d 99.8 9.3E-18 3.2E-22 179.1 21.2 194 389-615 25-235 (338)
70 3qwz_A Transitional endoplasmi 99.7 3.2E-18 1.1E-22 166.0 11.4 124 1-124 87-211 (211)
71 3syl_A Protein CBBX; photosynt 99.7 1.7E-17 5.8E-22 174.7 15.8 211 121-341 32-265 (309)
72 1um8_A ATP-dependent CLP prote 99.7 1.1E-17 3.6E-22 181.4 13.3 244 394-658 22-364 (376)
73 1hqc_A RUVB; extended AAA-ATPa 99.7 9.6E-17 3.3E-21 170.0 19.4 194 389-614 8-218 (324)
74 2z4s_A Chromosomal replication 99.7 6.5E-17 2.2E-21 178.2 14.5 193 427-660 130-333 (440)
75 3pvs_A Replication-associated 99.7 8.1E-17 2.8E-21 177.1 14.3 230 389-683 22-268 (447)
76 2v1u_A Cell division control p 99.7 7E-16 2.4E-20 167.3 21.4 205 392-616 18-258 (387)
77 1l8q_A Chromosomal replication 99.7 1.7E-16 5.9E-21 168.2 15.6 170 426-613 36-214 (324)
78 3cmw_A Protein RECA, recombina 99.7 4.4E-16 1.5E-20 191.7 20.5 149 116-265 1016-1217(1706)
79 4akg_A Glutathione S-transfera 99.7 7.5E-16 2.6E-20 197.6 22.6 407 153-583 1266-1795(2695)
80 1r6b_X CLPA protein; AAA+, N-t 99.7 4.9E-16 1.7E-20 183.7 19.4 243 390-678 183-456 (758)
81 4fcw_A Chaperone protein CLPB; 99.7 1.1E-16 3.8E-21 168.5 11.8 208 393-620 17-284 (311)
82 1g8p_A Magnesium-chelatase 38 99.7 6.2E-16 2.1E-20 165.6 16.5 218 387-659 18-322 (350)
83 2chg_A Replication factor C sm 99.7 3.5E-15 1.2E-19 148.2 19.2 201 388-657 12-224 (226)
84 3te6_A Regulatory protein SIR3 99.7 1.1E-15 3.7E-20 159.4 15.7 180 425-621 43-293 (318)
85 1ofh_A ATP-dependent HSL prote 99.6 3.9E-15 1.3E-19 156.4 19.4 177 120-298 15-212 (310)
86 1d2n_A N-ethylmaleimide-sensit 99.6 1.5E-15 5.3E-20 156.7 15.6 196 119-323 32-230 (272)
87 1sxj_A Activator 1 95 kDa subu 99.6 3.5E-16 1.2E-20 176.2 11.3 203 388-611 34-253 (516)
88 3m6a_A ATP-dependent protease 99.6 2.7E-16 9.4E-21 177.6 10.4 167 117-301 78-266 (543)
89 1jbk_A CLPB protein; beta barr 99.6 2.6E-16 9.1E-21 152.6 8.8 159 389-573 18-194 (195)
90 3uk6_A RUVB-like 2; hexameric 99.6 5.3E-15 1.8E-19 159.6 19.2 217 117-374 41-329 (368)
91 2r44_A Uncharacterized protein 99.6 1.1E-15 3.8E-20 162.4 13.6 155 392-580 26-201 (331)
92 3pxg_A Negative regulator of g 99.6 1E-15 3.5E-20 170.1 13.7 185 389-614 176-385 (468)
93 3bos_A Putative DNA replicatio 99.6 2.1E-15 7.3E-20 152.0 14.8 205 389-657 24-241 (242)
94 2qby_B CDC6 homolog 3, cell di 99.6 4.1E-15 1.4E-19 161.2 18.0 195 393-615 20-253 (384)
95 1njg_A DNA polymerase III subu 99.6 4.6E-15 1.6E-19 149.4 16.8 185 389-611 19-232 (250)
96 1in4_A RUVB, holliday junction 99.6 3.2E-14 1.1E-18 151.2 24.1 195 390-617 22-233 (334)
97 2qby_A CDC6 homolog 1, cell di 99.6 1.4E-14 4.9E-19 156.7 20.6 204 391-616 18-254 (386)
98 3cmu_A Protein RECA, recombina 99.6 2.2E-15 7.4E-20 187.3 14.9 212 320-541 615-868 (2050)
99 3pfi_A Holliday junction ATP-d 99.6 2.1E-14 7.2E-19 153.0 20.7 193 113-335 22-231 (338)
100 3tiw_A Transitional endoplasmi 99.6 2E-15 6.7E-20 143.9 11.1 104 1-104 84-187 (187)
101 1qvr_A CLPB protein; coiled co 99.6 2.2E-15 7.7E-20 179.7 13.6 201 389-615 166-393 (854)
102 3pxi_A Negative regulator of g 99.6 1.5E-15 5.1E-20 179.3 11.8 186 389-615 176-386 (758)
103 3hws_A ATP-dependent CLP prote 99.6 1.7E-14 5.8E-19 155.3 18.2 219 122-342 17-326 (363)
104 3u61_B DNA polymerase accessor 99.6 8E-15 2.7E-19 155.3 14.7 184 389-610 22-219 (324)
105 1fnn_A CDC6P, cell division co 99.6 5E-14 1.7E-18 152.8 20.0 202 391-617 15-257 (389)
106 1jbk_A CLPB protein; beta barr 99.6 7.4E-15 2.5E-19 142.2 11.1 159 116-297 18-194 (195)
107 2p65_A Hypothetical protein PF 99.6 2.8E-15 9.7E-20 144.7 6.6 151 390-565 19-187 (187)
108 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.1E-14 3.7E-19 161.5 12.0 191 395-618 24-270 (500)
109 1hqc_A RUVB; extended AAA-ATPa 99.5 8.4E-14 2.9E-18 147.3 18.3 191 114-333 6-213 (324)
110 3cmu_A Protein RECA, recombina 99.5 6.2E-14 2.1E-18 174.3 19.6 117 423-539 1423-1561(2050)
111 1sxj_D Activator 1 41 kDa subu 99.5 6.6E-14 2.3E-18 149.9 16.6 188 388-614 32-242 (353)
112 3pxg_A Negative regulator of g 99.5 4.9E-14 1.7E-18 156.5 15.4 183 116-336 176-383 (468)
113 1l8q_A Chromosomal replication 99.5 2.5E-13 8.6E-18 143.8 19.2 192 116-334 7-211 (324)
114 2chq_A Replication factor C sm 99.5 1.3E-13 4.5E-18 145.2 15.9 189 388-611 12-208 (319)
115 2z4s_A Chromosomal replication 99.5 3.9E-13 1.3E-17 148.0 18.6 191 154-375 130-332 (440)
116 1jr3_A DNA polymerase III subu 99.5 4.9E-13 1.7E-17 144.2 18.5 186 389-612 12-226 (373)
117 2p65_A Hypothetical protein PF 99.5 5.2E-14 1.8E-18 135.7 9.3 152 116-289 18-187 (187)
118 3f9v_A Minichromosome maintena 99.5 7.8E-15 2.7E-19 167.1 3.6 163 394-579 296-492 (595)
119 2v1u_A Cell division control p 99.5 9.3E-13 3.2E-17 142.5 19.5 200 118-336 17-254 (387)
120 3bos_A Putative DNA replicatio 99.5 2E-12 7E-17 130.0 20.0 187 117-338 25-224 (242)
121 1sxj_B Activator 1 37 kDa subu 99.5 4.9E-13 1.7E-17 141.1 15.7 184 389-611 17-213 (323)
122 4fcw_A Chaperone protein CLPB; 99.5 8.5E-13 2.9E-17 138.7 17.5 201 120-340 17-280 (311)
123 3u61_B DNA polymerase accessor 99.5 9.1E-13 3.1E-17 139.4 17.5 178 113-324 19-210 (324)
124 1um8_A ATP-dependent CLP prote 99.5 2.2E-12 7.6E-17 139.4 20.7 219 121-341 22-342 (376)
125 1iqp_A RFCS; clamp loader, ext 99.5 7.1E-13 2.4E-17 140.1 15.8 184 389-611 21-216 (327)
126 2chg_A Replication factor C sm 99.4 3.9E-12 1.3E-16 126.0 19.9 173 114-322 11-196 (226)
127 2bjv_A PSP operon transcriptio 99.4 3.1E-13 1.1E-17 138.8 12.2 195 390-614 3-240 (265)
128 1sxj_A Activator 1 95 kDa subu 99.4 2.6E-13 9E-18 152.7 12.3 194 113-321 32-243 (516)
129 3vlf_B 26S protease regulatory 99.4 1.8E-13 6.1E-18 114.8 7.8 86 565-675 2-88 (88)
130 1sxj_E Activator 1 40 kDa subu 99.4 2.4E-12 8.2E-17 137.9 18.4 186 389-612 10-242 (354)
131 3te6_A Regulatory protein SIR3 99.4 6.6E-13 2.2E-17 138.4 13.3 159 122-303 22-213 (318)
132 3aji_B S6C, proteasome (prosom 99.4 1E-13 3.6E-18 115.2 5.9 82 565-672 2-83 (83)
133 3pvs_A Replication-associated 99.4 2.1E-12 7.2E-17 142.0 17.7 172 113-322 19-207 (447)
134 2qby_B CDC6 homolog 3, cell di 99.4 7.9E-12 2.7E-16 135.3 19.7 175 120-320 20-232 (384)
135 1ojl_A Transcriptional regulat 99.4 3.6E-13 1.2E-17 141.0 8.4 168 427-614 25-235 (304)
136 2krk_A 26S protease regulatory 99.4 4.2E-13 1.4E-17 111.7 7.1 78 560-662 7-84 (86)
137 2r44_A Uncharacterized protein 99.4 5.6E-12 1.9E-16 133.8 17.2 152 119-303 26-200 (331)
138 2qby_A CDC6 homolog 1, cell di 99.4 1.3E-11 4.3E-16 133.4 20.2 199 118-336 18-250 (386)
139 1njg_A DNA polymerase III subu 99.4 5.5E-12 1.9E-16 126.6 16.2 186 114-334 17-231 (250)
140 1g8p_A Magnesium-chelatase 38 99.4 1.1E-11 3.8E-16 132.3 19.1 159 115-299 19-230 (350)
141 4akg_A Glutathione S-transfera 99.4 2.2E-11 7.4E-16 156.8 24.7 354 154-565 645-1075(2695)
142 3kw6_A 26S protease regulatory 99.4 8.9E-13 3E-17 108.1 7.6 75 562-661 1-75 (78)
143 1in4_A RUVB, holliday junction 99.4 4.7E-11 1.6E-15 126.7 22.2 194 114-337 19-229 (334)
144 1fnn_A CDC6P, cell division co 99.3 2.6E-11 8.7E-16 131.4 19.9 199 118-338 15-254 (389)
145 3k1j_A LON protease, ATP-depen 99.3 3.7E-12 1.3E-16 146.0 11.2 230 386-672 34-387 (604)
146 1a5t_A Delta prime, HOLB; zinc 99.3 3.1E-11 1.1E-15 128.1 17.5 159 425-610 22-208 (334)
147 1sxj_D Activator 1 41 kDa subu 99.3 1.8E-11 6.1E-16 130.9 15.5 175 113-322 30-227 (353)
148 1sxj_C Activator 1 40 kDa subu 99.3 1.7E-11 6E-16 130.5 15.2 170 389-596 21-202 (340)
149 2chq_A Replication factor C sm 99.3 1.2E-11 4.1E-16 130.1 13.8 178 113-321 10-195 (319)
150 1iqp_A RFCS; clamp loader, ext 99.3 6.6E-11 2.3E-15 124.8 19.1 178 113-321 18-203 (327)
151 1sxj_B Activator 1 37 kDa subu 99.3 3.5E-11 1.2E-15 126.8 16.7 174 114-323 15-202 (323)
152 3vkg_A Dynein heavy chain, cyt 99.3 3.2E-11 1.1E-15 155.9 19.2 320 153-496 1303-1714(3245)
153 3n70_A Transport activator; si 99.3 3E-12 1E-16 118.7 6.4 110 427-564 24-144 (145)
154 2dzn_B 26S protease regulatory 99.3 1E-12 3.4E-17 108.8 2.6 81 567-672 1-82 (82)
155 1w5s_A Origin recognition comp 99.3 1.3E-10 4.4E-15 126.9 19.8 206 393-616 22-275 (412)
156 1cz4_A VCP-like ATPase; double 99.3 1.7E-11 5.9E-16 117.1 10.6 102 1-107 69-178 (185)
157 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 3.1E-11 1.1E-15 133.8 14.3 150 121-300 23-195 (500)
158 1sxj_E Activator 1 40 kDa subu 99.2 7.6E-11 2.6E-15 126.1 15.4 178 113-322 7-229 (354)
159 1jr3_A DNA polymerase III subu 99.2 1.5E-10 5.2E-15 124.6 17.6 185 114-333 10-223 (373)
160 3co5_A Putative two-component 99.2 2.6E-12 9E-17 118.7 2.9 131 395-564 6-142 (143)
161 2gno_A DNA polymerase III, gam 99.2 5.1E-11 1.8E-15 124.2 12.0 125 427-577 18-152 (305)
162 2bjv_A PSP operon transcriptio 99.2 6.6E-11 2.2E-15 121.3 11.1 149 117-293 3-182 (265)
163 3co5_A Putative two-component 99.2 3.3E-11 1.1E-15 111.3 6.8 112 121-266 5-116 (143)
164 3n70_A Transport activator; si 99.1 9.2E-11 3.1E-15 108.6 8.1 112 121-266 2-116 (145)
165 1sxj_C Activator 1 40 kDa subu 99.1 1.8E-09 6.2E-14 114.8 19.3 173 113-321 18-203 (340)
166 1ojl_A Transcriptional regulat 99.1 2.9E-10 9.8E-15 118.9 11.2 145 121-293 3-178 (304)
167 1wlf_A PEX1, peroxisome biogen 99.0 2.1E-10 7.3E-15 108.9 7.0 101 1-103 74-177 (179)
168 1a5t_A Delta prime, HOLB; zinc 99.0 1.2E-08 4E-13 108.2 20.0 163 125-322 7-197 (334)
169 3f9v_A Minichromosome maintena 99.0 5.1E-10 1.8E-14 127.4 7.9 131 154-302 327-491 (595)
170 3ec2_A DNA replication protein 99.0 2E-09 6.7E-14 103.3 10.0 100 114-225 4-112 (180)
171 2vhj_A Ntpase P4, P4; non- hyd 98.9 3.4E-10 1.2E-14 116.7 4.2 122 423-549 119-242 (331)
172 2gno_A DNA polymerase III, gam 98.9 1.5E-08 5.1E-13 105.5 15.3 142 124-301 1-152 (305)
173 1w5s_A Origin recognition comp 98.9 3.2E-08 1.1E-12 107.8 18.0 203 119-336 21-271 (412)
174 3ec2_A DNA replication protein 98.8 6.6E-09 2.3E-13 99.6 9.5 105 423-542 34-143 (180)
175 3vkg_A Dynein heavy chain, cyt 98.8 2E-08 7E-13 130.2 15.5 126 155-297 605-749 (3245)
176 2kjq_A DNAA-related protein; s 98.8 2.7E-09 9.2E-14 99.0 4.9 57 427-498 36-95 (149)
177 2kjq_A DNAA-related protein; s 98.8 5.2E-09 1.8E-13 97.1 6.7 97 153-275 35-137 (149)
178 1svm_A Large T antigen; AAA+ f 98.8 1.9E-09 6.5E-14 115.2 3.9 119 423-563 165-284 (377)
179 3k1j_A LON protease, ATP-depen 98.8 2.9E-08 1E-12 113.6 12.7 52 113-179 34-85 (604)
180 2krk_A 26S protease regulatory 98.7 1.1E-08 3.6E-13 85.0 5.5 76 285-377 8-83 (86)
181 2fna_A Conserved hypothetical 98.7 7.5E-07 2.6E-11 94.5 20.5 185 391-609 11-252 (357)
182 3kw6_A 26S protease regulatory 98.7 2.6E-08 9E-13 81.2 6.5 73 286-375 1-73 (78)
183 2r2a_A Uncharacterized protein 98.7 2.4E-08 8.1E-13 97.1 6.5 127 429-567 7-156 (199)
184 2vhj_A Ntpase P4, P4; non- hyd 98.6 1.3E-08 4.5E-13 104.9 4.9 120 150-273 119-242 (331)
185 1tf7_A KAIC; homohexamer, hexa 98.6 4.6E-07 1.6E-11 101.9 17.6 110 423-542 277-417 (525)
186 1ny5_A Transcriptional regulat 98.6 6.4E-08 2.2E-12 104.5 9.8 167 428-614 161-370 (387)
187 2w58_A DNAI, primosome compone 98.6 3.9E-08 1.3E-12 96.0 6.9 69 428-498 55-127 (202)
188 3vlf_B 26S protease regulatory 98.6 7.6E-08 2.6E-12 80.3 6.8 74 289-379 2-75 (88)
189 3f8t_A Predicted ATPase involv 98.6 8.1E-08 2.8E-12 103.4 8.4 143 395-568 215-385 (506)
190 2w58_A DNAI, primosome compone 98.5 9.5E-08 3.3E-12 93.2 7.0 70 155-226 55-128 (202)
191 2qen_A Walker-type ATPase; unk 98.5 5.9E-06 2E-10 87.3 20.6 179 119-323 11-239 (350)
192 2qen_A Walker-type ATPase; unk 98.5 4.5E-06 1.5E-10 88.3 19.5 188 391-608 10-247 (350)
193 3dzd_A Transcriptional regulat 98.5 2.2E-07 7.6E-12 99.5 9.0 166 428-613 153-360 (368)
194 2qgz_A Helicase loader, putati 98.5 7.3E-08 2.5E-12 100.6 4.5 70 427-498 152-226 (308)
195 2fna_A Conserved hypothetical 98.5 4.4E-06 1.5E-10 88.5 18.2 178 118-323 11-243 (357)
196 3aji_B S6C, proteasome (prosom 98.4 1.6E-07 5.4E-12 77.6 5.1 74 289-379 2-75 (83)
197 2jv2_A Putative uncharacterize 98.4 2E-06 6.8E-11 69.8 9.5 71 27-103 11-81 (83)
198 2r2a_A Uncharacterized protein 98.3 1.3E-06 4.5E-11 84.7 8.0 127 155-291 6-156 (199)
199 1tue_A Replication protein E1; 98.2 6.1E-07 2.1E-11 86.2 4.7 110 424-563 55-178 (212)
200 1svm_A Large T antigen; AAA+ f 98.2 4.7E-07 1.6E-11 96.7 3.6 119 149-287 164-284 (377)
201 2qgz_A Helicase loader, putati 98.2 1.5E-06 5E-11 90.7 6.6 71 154-226 152-227 (308)
202 1ye8_A Protein THEP1, hypothet 98.2 1.1E-05 3.8E-10 76.8 12.2 26 156-181 2-27 (178)
203 1tue_A Replication protein E1; 98.2 6E-06 2E-10 79.3 10.2 32 151-182 55-86 (212)
204 1ye8_A Protein THEP1, hypothet 98.2 6.7E-06 2.3E-10 78.4 9.9 25 430-454 3-27 (178)
205 1ny5_A Transcriptional regulat 98.2 1.2E-05 3.9E-10 86.8 13.0 121 120-266 137-282 (387)
206 2dzn_B 26S protease regulatory 98.0 1.3E-06 4.5E-11 71.7 2.2 69 291-376 1-69 (82)
207 2w0m_A SSO2452; RECA, SSPF, un 98.0 2.4E-05 8.1E-10 77.5 10.3 37 150-186 19-58 (235)
208 1n0w_A DNA repair protein RAD5 98.0 1.3E-05 4.5E-10 80.1 8.0 79 150-228 20-134 (243)
209 1u0j_A DNA replication protein 97.9 9.4E-06 3.2E-10 81.7 5.7 29 425-453 102-130 (267)
210 3dzd_A Transcriptional regulat 97.9 6.5E-05 2.2E-09 80.2 12.5 119 121-265 130-272 (368)
211 3hr8_A Protein RECA; alpha and 97.9 5E-05 1.7E-09 80.2 11.2 113 150-262 57-194 (356)
212 3hr8_A Protein RECA; alpha and 97.9 3E-05 1E-09 81.8 9.4 117 423-539 57-195 (356)
213 4a74_A DNA repair and recombin 97.9 2.1E-05 7.3E-10 77.8 7.7 29 150-178 21-49 (231)
214 2cvh_A DNA repair and recombin 97.9 3.6E-05 1.2E-09 75.6 9.0 39 150-188 16-54 (220)
215 2cvh_A DNA repair and recombin 97.8 3.2E-05 1.1E-09 75.9 8.2 40 423-462 16-55 (220)
216 3rlf_A Maltose/maltodextrin im 97.8 1.8E-05 6.2E-10 84.1 6.7 31 149-179 24-54 (381)
217 2ehv_A Hypothetical protein PH 97.8 5.5E-05 1.9E-09 75.8 9.4 26 150-175 26-51 (251)
218 4g1u_C Hemin import ATP-bindin 97.8 1.8E-05 6.3E-10 80.4 5.9 30 149-178 32-61 (266)
219 2zr9_A Protein RECA, recombina 97.8 1.6E-05 5.5E-10 84.2 5.7 119 423-541 57-197 (349)
220 2ehv_A Hypothetical protein PH 97.8 8.1E-05 2.8E-09 74.6 10.2 129 423-562 26-206 (251)
221 3gfo_A Cobalt import ATP-bindi 97.8 2.2E-05 7.5E-10 80.1 5.9 31 149-179 29-59 (275)
222 3fvq_A Fe(3+) IONS import ATP- 97.8 2.9E-05 9.9E-10 81.9 7.0 31 149-179 25-55 (359)
223 1xp8_A RECA protein, recombina 97.7 5.3E-05 1.8E-09 80.5 8.7 118 423-540 70-209 (366)
224 4gp7_A Metallophosphoesterase; 97.7 1.6E-05 5.4E-10 75.2 4.2 25 149-173 4-28 (171)
225 1v5w_A DMC1, meiotic recombina 97.7 8.4E-05 2.9E-09 78.6 10.2 88 141-228 107-234 (343)
226 1xp8_A RECA protein, recombina 97.7 0.0001 3.5E-09 78.3 10.7 114 150-263 70-208 (366)
227 2zr9_A Protein RECA, recombina 97.7 4.2E-05 1.4E-09 81.0 7.6 78 150-227 57-153 (349)
228 1n0w_A DNA repair protein RAD5 97.7 4.2E-05 1.5E-09 76.3 7.3 78 423-500 20-133 (243)
229 3tui_C Methionine import ATP-b 97.7 3.5E-05 1.2E-09 81.3 6.7 31 149-179 49-79 (366)
230 2it1_A 362AA long hypothetical 97.7 3.9E-05 1.3E-09 81.3 7.0 31 149-179 24-54 (362)
231 2yyz_A Sugar ABC transporter, 97.7 3.6E-05 1.2E-09 81.4 6.7 31 149-179 24-54 (359)
232 3tif_A Uncharacterized ABC tra 97.7 3.7E-05 1.3E-09 76.7 6.3 31 149-179 26-56 (235)
233 1z47_A CYSA, putative ABC-tran 97.7 3.2E-05 1.1E-09 81.6 6.0 31 149-179 36-66 (355)
234 1pzn_A RAD51, DNA repair and r 97.7 5.1E-05 1.7E-09 80.4 7.6 40 149-188 126-174 (349)
235 3lda_A DNA repair protein RAD5 97.7 6E-05 2.1E-09 81.0 7.8 115 150-264 174-326 (400)
236 2w0m_A SSO2452; RECA, SSPF, un 97.7 4.4E-05 1.5E-09 75.5 6.3 37 423-459 19-58 (235)
237 2z43_A DNA repair and recombin 97.7 6E-05 2.1E-09 79.1 7.6 87 141-227 92-217 (324)
238 1v43_A Sugar-binding transport 97.6 3.8E-05 1.3E-09 81.6 5.6 31 149-179 32-62 (372)
239 1vpl_A ABC transporter, ATP-bi 97.6 9.1E-05 3.1E-09 74.8 8.0 31 149-179 36-66 (256)
240 2eyu_A Twitching motility prot 97.6 4E-05 1.4E-09 77.7 5.2 78 146-223 17-108 (261)
241 4a74_A DNA repair and recombin 97.6 4.4E-05 1.5E-09 75.5 5.5 40 423-462 21-69 (231)
242 1u94_A RECA protein, recombina 97.6 0.00015 5E-09 76.9 9.7 78 150-227 59-155 (356)
243 2pcj_A ABC transporter, lipopr 97.6 6.6E-05 2.3E-09 74.3 6.2 31 149-179 25-55 (224)
244 3d31_A Sulfate/molybdate ABC t 97.6 5.3E-05 1.8E-09 79.8 5.8 31 149-179 21-51 (348)
245 1jr3_D DNA polymerase III, del 97.6 0.0004 1.4E-08 73.3 12.4 159 426-612 17-190 (343)
246 3io5_A Recombination and repai 97.6 0.00019 6.4E-09 73.7 9.2 78 150-228 25-126 (333)
247 1u94_A RECA protein, recombina 97.5 6.8E-05 2.3E-09 79.4 6.0 117 423-539 59-197 (356)
248 3f8t_A Predicted ATPase involv 97.5 0.0001 3.4E-09 79.6 7.2 118 156-292 241-385 (506)
249 1qhx_A CPT, protein (chloramph 97.5 0.00022 7.4E-09 67.4 8.8 36 154-189 3-38 (178)
250 1g6h_A High-affinity branched- 97.5 0.00014 4.9E-09 73.5 7.9 30 150-179 29-58 (257)
251 2olj_A Amino acid ABC transpor 97.5 0.00014 4.8E-09 73.7 7.5 31 149-179 45-75 (263)
252 3vaa_A Shikimate kinase, SK; s 97.5 5.6E-05 1.9E-09 73.3 4.3 36 150-185 21-56 (199)
253 1g29_1 MALK, maltose transport 97.5 8.3E-05 2.8E-09 79.1 5.9 31 149-179 24-54 (372)
254 3jvv_A Twitching mobility prot 97.5 9.7E-05 3.3E-09 78.2 6.1 72 152-223 121-206 (356)
255 2onk_A Molybdate/tungstate ABC 97.5 6.8E-05 2.3E-09 74.9 4.4 30 149-179 20-49 (240)
256 1u0j_A DNA replication protein 97.5 0.00034 1.2E-08 70.3 9.4 29 152-180 102-130 (267)
257 2yuj_A Ubiquitin fusion degrad 97.4 0.00043 1.5E-08 65.0 9.2 94 2-99 92-186 (190)
258 3io5_A Recombination and repai 97.4 0.00028 9.6E-09 72.4 8.4 116 423-539 25-169 (333)
259 2z43_A DNA repair and recombin 97.4 0.00014 4.8E-09 76.2 6.4 114 423-539 103-255 (324)
260 2eyu_A Twitching motility prot 97.4 0.00016 5.6E-09 73.1 6.6 79 418-496 16-108 (261)
261 3gd7_A Fusion complex of cysti 97.4 0.00025 8.7E-09 75.8 8.3 30 149-178 42-71 (390)
262 3nh6_A ATP-binding cassette SU 97.4 0.00014 4.8E-09 75.2 6.0 31 149-179 75-105 (306)
263 2ixe_A Antigen peptide transpo 97.4 0.0003 1E-08 71.6 8.2 31 149-179 40-70 (271)
264 1v5w_A DMC1, meiotic recombina 97.4 0.00052 1.8E-08 72.4 10.1 115 423-540 118-272 (343)
265 1pzn_A RAD51, DNA repair and r 97.4 0.00017 5.7E-09 76.4 6.2 40 423-462 127-175 (349)
266 1zp6_A Hypothetical protein AT 97.4 0.0001 3.4E-09 70.7 4.0 41 150-190 5-45 (191)
267 3fvq_A Fe(3+) IONS import ATP- 97.4 1.7E-05 5.8E-10 83.7 -1.6 43 418-460 19-65 (359)
268 1oxx_K GLCV, glucose, ABC tran 97.3 7.4E-05 2.5E-09 79.0 3.1 31 149-179 26-56 (353)
269 1nlf_A Regulatory protein REPA 97.3 0.0005 1.7E-08 70.3 9.1 29 150-178 26-54 (279)
270 2ff7_A Alpha-hemolysin translo 97.3 0.00033 1.1E-08 70.3 7.4 31 149-179 30-60 (247)
271 2qi9_C Vitamin B12 import ATP- 97.3 0.00025 8.7E-09 71.2 6.5 31 149-179 21-51 (249)
272 1zc1_A Ubiquitin fusion degrad 97.3 0.00063 2.1E-08 64.7 8.7 95 3-101 98-196 (208)
273 2orw_A Thymidine kinase; TMTK, 97.3 9.9E-05 3.4E-09 70.6 3.3 68 429-498 5-88 (184)
274 1z6t_A APAF-1, apoptotic prote 97.3 0.0031 1.1E-07 71.6 15.9 46 120-176 124-169 (591)
275 2ewv_A Twitching motility prot 97.3 0.00022 7.7E-09 76.1 5.9 80 144-223 126-219 (372)
276 3gfo_A Cobalt import ATP-bindi 97.3 1.4E-05 4.8E-10 81.6 -3.4 44 418-461 23-70 (275)
277 2p5t_B PEZT; postsegregational 97.3 0.0011 3.7E-08 66.7 10.7 40 151-190 29-68 (253)
278 1cr0_A DNA primase/helicase; R 97.3 0.0006 2.1E-08 70.3 8.9 30 149-178 30-59 (296)
279 3jvv_A Twitching mobility prot 97.3 0.00035 1.2E-08 73.9 7.1 98 427-545 123-234 (356)
280 2nq2_C Hypothetical ABC transp 97.3 0.00045 1.5E-08 69.6 7.5 31 149-179 26-56 (253)
281 3lda_A DNA repair protein RAD5 97.2 0.00021 7E-09 76.9 5.3 116 423-541 174-327 (400)
282 2dr3_A UPF0273 protein PH0284; 97.2 0.0023 7.9E-08 63.6 12.8 38 150-187 19-59 (247)
283 3trf_A Shikimate kinase, SK; a 97.2 0.00017 5.9E-09 68.7 4.2 32 154-185 5-36 (185)
284 1qhx_A CPT, protein (chloramph 97.2 0.00019 6.6E-09 67.8 4.5 37 428-464 4-40 (178)
285 2i1q_A DNA repair and recombin 97.2 0.00039 1.3E-08 72.7 7.2 28 150-177 94-121 (322)
286 3vaa_A Shikimate kinase, SK; s 97.2 0.00019 6.6E-09 69.4 4.4 34 425-458 23-56 (199)
287 4g1u_C Hemin import ATP-bindin 97.2 0.00018 6.1E-09 73.1 4.1 34 418-451 26-61 (266)
288 1z6t_A APAF-1, apoptotic prote 97.2 0.0022 7.5E-08 72.9 13.7 165 393-599 124-321 (591)
289 1kag_A SKI, shikimate kinase I 97.2 0.00026 8.9E-09 66.5 4.6 30 154-183 4-33 (173)
290 3rlf_A Maltose/maltodextrin im 97.2 4.1E-05 1.4E-09 81.4 -1.1 42 419-460 19-64 (381)
291 1zp6_A Hypothetical protein AT 97.2 0.00019 6.4E-09 68.8 3.6 39 425-463 7-45 (191)
292 2rhm_A Putative kinase; P-loop 97.2 0.0003 1E-08 67.3 5.1 34 151-184 2-35 (193)
293 2i3b_A HCR-ntpase, human cance 97.2 0.0005 1.7E-08 65.9 6.5 133 430-579 4-186 (189)
294 1y63_A LMAJ004144AAA protein; 97.1 0.00026 8.9E-09 67.5 4.2 33 152-184 8-41 (184)
295 1z47_A CYSA, putative ABC-tran 97.1 5.2E-05 1.8E-09 80.0 -0.9 42 419-460 31-76 (355)
296 2b8t_A Thymidine kinase; deoxy 97.1 0.00096 3.3E-08 65.5 8.1 73 153-226 11-102 (223)
297 3iij_A Coilin-interacting nucl 97.1 0.00035 1.2E-08 66.2 4.6 33 152-184 9-41 (180)
298 1nlf_A Regulatory protein REPA 97.1 0.00078 2.7E-08 68.8 7.5 29 423-451 26-54 (279)
299 3trf_A Shikimate kinase, SK; a 97.1 0.00033 1.1E-08 66.6 4.2 32 427-458 5-36 (185)
300 2orw_A Thymidine kinase; TMTK, 97.1 0.00054 1.8E-08 65.4 5.6 24 154-177 3-26 (184)
301 4eun_A Thermoresistant glucoki 97.1 0.00048 1.6E-08 66.6 5.2 37 152-190 27-63 (200)
302 3kb2_A SPBC2 prophage-derived 97.0 0.00038 1.3E-08 65.2 4.3 31 156-186 3-33 (173)
303 3uie_A Adenylyl-sulfate kinase 97.0 0.00055 1.9E-08 66.2 5.5 39 152-190 23-64 (200)
304 2r6a_A DNAB helicase, replicat 97.0 0.0015 5.2E-08 71.7 9.6 38 150-187 199-240 (454)
305 3sfz_A APAF-1, apoptotic pepti 97.0 0.0075 2.6E-07 74.7 17.0 167 119-322 123-320 (1249)
306 2dr3_A UPF0273 protein PH0284; 97.0 0.0028 9.6E-08 63.0 10.8 38 423-460 19-59 (247)
307 1via_A Shikimate kinase; struc 97.0 0.00044 1.5E-08 65.2 4.5 29 156-184 6-34 (175)
308 1knq_A Gluconate kinase; ALFA/ 97.0 0.00056 1.9E-08 64.4 5.2 36 153-190 7-42 (175)
309 1htw_A HI0065; nucleotide-bind 97.0 0.00047 1.6E-08 64.0 4.5 31 148-178 27-57 (158)
310 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0017 6E-08 65.5 9.0 38 154-191 4-44 (260)
311 1kag_A SKI, shikimate kinase I 97.0 0.0005 1.7E-08 64.6 4.6 29 428-456 5-33 (173)
312 2rhm_A Putative kinase; P-loop 97.0 0.00044 1.5E-08 66.2 4.2 32 426-457 4-35 (193)
313 2iut_A DNA translocase FTSK; n 97.0 0.003 1E-07 70.2 11.4 75 487-574 344-420 (574)
314 3sfz_A APAF-1, apoptotic pepti 97.0 0.0089 3E-07 74.0 16.9 166 394-599 125-321 (1249)
315 2iyv_A Shikimate kinase, SK; t 97.0 0.00043 1.5E-08 65.8 3.9 30 155-184 3-32 (184)
316 2ewv_A Twitching motility prot 97.0 0.00064 2.2E-08 72.6 5.6 79 418-496 127-219 (372)
317 1zuh_A Shikimate kinase; alpha 97.0 0.00047 1.6E-08 64.5 4.1 31 155-185 8-38 (168)
318 3tui_C Methionine import ATP-b 96.9 0.00067 2.3E-08 71.6 5.6 43 419-461 44-90 (366)
319 1cr0_A DNA primase/helicase; R 96.9 0.00089 3E-08 69.0 6.4 29 423-451 31-59 (296)
320 1v43_A Sugar-binding transport 96.9 0.00016 5.6E-09 76.8 0.8 33 419-451 27-61 (372)
321 2i1q_A DNA repair and recombin 96.9 0.00071 2.4E-08 70.8 5.7 113 423-538 94-255 (322)
322 3cm0_A Adenylate kinase; ATP-b 96.9 0.00055 1.9E-08 65.1 4.4 30 154-183 4-33 (186)
323 3ozx_A RNAse L inhibitor; ATP 96.9 0.00071 2.4E-08 75.7 5.8 29 150-178 290-318 (538)
324 2r8r_A Sensor protein; KDPD, P 96.9 0.013 4.5E-07 57.1 14.0 31 429-459 8-41 (228)
325 1gvn_B Zeta; postsegregational 96.9 0.0013 4.3E-08 67.6 7.2 40 152-191 31-70 (287)
326 1via_A Shikimate kinase; struc 96.9 0.00057 1.9E-08 64.5 4.2 29 429-457 6-34 (175)
327 2cdn_A Adenylate kinase; phosp 96.9 0.0006 2.1E-08 65.9 4.4 33 153-185 19-51 (201)
328 3kb2_A SPBC2 prophage-derived 96.9 0.00054 1.9E-08 64.1 3.9 30 429-458 3-32 (173)
329 2pez_A Bifunctional 3'-phospho 96.9 0.00088 3E-08 63.4 5.4 38 153-190 4-44 (179)
330 3iij_A Coilin-interacting nucl 96.9 0.00075 2.6E-08 63.9 4.9 31 427-457 11-41 (180)
331 3t61_A Gluconokinase; PSI-biol 96.9 0.00065 2.2E-08 65.7 4.5 31 154-184 18-48 (202)
332 1tev_A UMP-CMP kinase; ploop, 96.9 0.00062 2.1E-08 65.1 4.3 31 154-184 3-33 (196)
333 2c95_A Adenylate kinase 1; tra 96.9 0.0006 2.1E-08 65.3 4.1 33 153-185 8-40 (196)
334 3thx_B DNA mismatch repair pro 96.9 0.0016 5.4E-08 77.0 8.4 28 150-177 669-696 (918)
335 3dm5_A SRP54, signal recogniti 96.9 0.0078 2.7E-07 65.0 13.2 73 153-225 99-194 (443)
336 2ze6_A Isopentenyl transferase 96.9 0.00064 2.2E-08 68.4 4.5 32 156-187 3-34 (253)
337 3umf_A Adenylate kinase; rossm 96.9 0.00087 3E-08 65.6 5.2 39 151-191 26-64 (217)
338 2p5t_B PEZT; postsegregational 96.9 0.0013 4.5E-08 66.1 6.7 37 427-463 32-68 (253)
339 4gp7_A Metallophosphoesterase; 96.9 0.00016 5.6E-09 68.1 -0.1 20 427-446 9-28 (171)
340 3nwj_A ATSK2; P loop, shikimat 96.9 0.00055 1.9E-08 68.7 3.8 32 154-185 48-79 (250)
341 1aky_A Adenylate kinase; ATP:A 96.8 0.0009 3.1E-08 65.7 5.3 32 153-184 3-34 (220)
342 2ius_A DNA translocase FTSK; n 96.8 0.0034 1.2E-07 69.2 10.4 76 487-575 297-375 (512)
343 1vma_A Cell division protein F 96.8 0.0031 1.1E-07 65.1 9.5 73 151-223 101-196 (306)
344 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00028 9.6E-09 74.0 1.5 74 151-224 168-251 (330)
345 3qf4_B Uncharacterized ABC tra 96.8 0.0018 6.2E-08 73.6 8.3 31 149-179 376-406 (598)
346 1y63_A LMAJ004144AAA protein; 96.8 0.00084 2.9E-08 63.9 4.5 30 428-457 11-41 (184)
347 2ius_A DNA translocase FTSK; n 96.8 0.0039 1.3E-07 68.8 10.3 76 213-298 296-374 (512)
348 1e6c_A Shikimate kinase; phosp 96.8 0.00075 2.6E-08 63.3 4.0 30 155-184 3-32 (173)
349 1zd8_A GTP:AMP phosphotransfer 96.8 0.00066 2.2E-08 67.0 3.8 34 152-185 5-38 (227)
350 3qf4_A ABC transporter, ATP-bi 96.8 0.0017 5.9E-08 73.6 7.7 31 149-179 364-394 (587)
351 2b8t_A Thymidine kinase; deoxy 96.8 0.0016 5.4E-08 64.0 6.2 68 430-498 15-101 (223)
352 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00075 2.6E-08 70.7 4.1 72 426-497 170-251 (330)
353 3crm_A TRNA delta(2)-isopenten 96.8 0.0027 9.1E-08 65.8 8.1 35 155-189 6-40 (323)
354 1kht_A Adenylate kinase; phosp 96.8 0.00092 3.1E-08 63.7 4.4 26 154-179 3-28 (192)
355 3tr0_A Guanylate kinase, GMP k 96.7 0.00089 3E-08 64.7 4.3 29 151-179 4-32 (205)
356 3tlx_A Adenylate kinase 2; str 96.7 0.00093 3.2E-08 66.8 4.5 34 152-185 27-60 (243)
357 2vli_A Antibiotic resistance p 96.7 0.00069 2.4E-08 64.2 3.4 30 154-183 5-34 (183)
358 2a5y_B CED-4; apoptosis; HET: 96.7 0.012 4E-07 66.2 14.1 144 123-301 131-306 (549)
359 1ly1_A Polynucleotide kinase; 96.7 0.00074 2.5E-08 63.7 3.6 27 155-181 3-30 (181)
360 3lw7_A Adenylate kinase relate 96.7 0.0011 3.8E-08 62.0 4.7 29 156-185 3-31 (179)
361 2ze6_A Isopentenyl transferase 96.7 0.00073 2.5E-08 68.0 3.6 32 429-460 3-34 (253)
362 2bwj_A Adenylate kinase 5; pho 96.7 0.00083 2.8E-08 64.5 3.9 31 154-184 12-42 (199)
363 3upu_A ATP-dependent DNA helic 96.7 0.0029 9.8E-08 69.6 8.7 96 429-541 47-166 (459)
364 4a82_A Cystic fibrosis transme 96.7 0.0015 5.2E-08 74.0 6.6 31 149-179 362-392 (578)
365 2yyz_A Sugar ABC transporter, 96.7 0.0016 5.6E-08 68.7 6.4 41 420-460 20-64 (359)
366 1z6g_A Guanylate kinase; struc 96.7 0.00081 2.8E-08 66.0 3.8 31 149-179 18-48 (218)
367 3upu_A ATP-dependent DNA helic 96.7 0.0042 1.5E-07 68.2 10.0 23 156-178 47-69 (459)
368 2iyv_A Shikimate kinase, SK; t 96.7 0.00091 3.1E-08 63.5 4.0 29 429-457 4-32 (184)
369 2iut_A DNA translocase FTSK; n 96.7 0.014 4.6E-07 65.0 13.7 74 215-298 345-420 (574)
370 1qf9_A UMP/CMP kinase, protein 96.7 0.0011 3.8E-08 63.2 4.4 31 154-184 6-36 (194)
371 1ukz_A Uridylate kinase; trans 96.7 0.0011 3.7E-08 64.1 4.3 33 153-185 14-46 (203)
372 4eun_A Thermoresistant glucoki 96.7 0.0012 4E-08 63.8 4.6 35 427-463 29-63 (200)
373 2pt5_A Shikimate kinase, SK; a 96.7 0.0011 3.6E-08 61.9 4.0 29 156-184 2-30 (168)
374 3uie_A Adenylyl-sulfate kinase 96.7 0.0018 6.2E-08 62.5 5.9 37 427-463 25-64 (200)
375 3b5x_A Lipid A export ATP-bind 96.7 0.0037 1.3E-07 70.9 9.3 30 149-178 364-393 (582)
376 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.6E-08 62.1 4.0 30 429-458 9-38 (168)
377 1jr3_D DNA polymerase III, del 96.7 0.013 4.6E-07 61.4 13.1 154 154-333 18-184 (343)
378 3be4_A Adenylate kinase; malar 96.7 0.00086 2.9E-08 65.7 3.5 32 154-185 5-36 (217)
379 1ak2_A Adenylate kinase isoenz 96.7 0.0015 5.2E-08 64.7 5.4 33 153-185 15-47 (233)
380 3dl0_A Adenylate kinase; phosp 96.6 0.001 3.4E-08 65.1 3.8 30 156-185 2-31 (216)
381 3umf_A Adenylate kinase; rossm 96.6 0.0011 3.6E-08 65.0 3.9 40 425-466 27-66 (217)
382 3fb4_A Adenylate kinase; psych 96.6 0.0011 3.7E-08 64.8 4.0 30 156-185 2-31 (216)
383 3j16_B RLI1P; ribosome recycli 96.6 0.0023 8E-08 72.4 7.2 28 151-178 100-127 (608)
384 3lw7_A Adenylate kinase relate 96.6 0.0011 3.9E-08 61.9 4.0 29 429-458 3-31 (179)
385 2fz4_A DNA repair protein RAD2 96.6 0.007 2.4E-07 60.1 10.0 33 155-187 109-141 (237)
386 1cke_A CK, MSSA, protein (cyti 96.6 0.0015 5.2E-08 64.2 5.0 29 155-183 6-34 (227)
387 1zak_A Adenylate kinase; ATP:A 96.6 0.0011 3.7E-08 65.2 3.9 31 153-183 4-34 (222)
388 3b60_A Lipid A export ATP-bind 96.6 0.0033 1.1E-07 71.3 8.4 31 149-179 364-394 (582)
389 1e6c_A Shikimate kinase; phosp 96.6 0.0013 4.3E-08 61.7 4.2 29 429-457 4-32 (173)
390 3kl4_A SRP54, signal recogniti 96.6 0.0058 2E-07 66.0 9.8 73 153-225 96-191 (433)
391 3cm0_A Adenylate kinase; ATP-b 96.6 0.0012 4E-08 62.7 3.9 28 429-456 6-33 (186)
392 2q6t_A DNAB replication FORK h 96.6 0.0046 1.6E-07 67.6 9.2 38 150-187 196-237 (444)
393 2v9p_A Replication protein E1; 96.6 0.0013 4.5E-08 67.7 4.5 34 148-181 120-153 (305)
394 3e1s_A Exodeoxyribonuclease V, 96.6 0.0026 8.8E-08 71.8 7.2 32 154-185 204-238 (574)
395 3sr0_A Adenylate kinase; phosp 96.6 0.0015 5.2E-08 63.4 4.7 34 156-191 2-35 (206)
396 2c95_A Adenylate kinase 1; tra 96.6 0.0012 4.2E-08 63.1 4.0 32 427-458 9-40 (196)
397 1knq_A Gluconate kinase; ALFA/ 96.6 0.0015 5E-08 61.5 4.4 33 429-463 10-42 (175)
398 1gvn_B Zeta; postsegregational 96.6 0.0012 4.2E-08 67.7 4.1 38 427-464 33-70 (287)
399 3sr0_A Adenylate kinase; phosp 96.6 0.0013 4.5E-08 63.8 4.1 34 430-465 3-36 (206)
400 3e1s_A Exodeoxyribonuclease V, 96.6 0.0026 9E-08 71.7 7.2 98 428-542 205-318 (574)
401 3t61_A Gluconokinase; PSI-biol 96.6 0.0015 5.2E-08 63.0 4.6 30 428-457 19-48 (202)
402 1znw_A Guanylate kinase, GMP k 96.6 0.0013 4.3E-08 64.0 4.0 30 150-179 16-45 (207)
403 3bh0_A DNAB-like replicative h 96.6 0.0076 2.6E-07 62.6 10.2 38 150-187 64-104 (315)
404 1kgd_A CASK, peripheral plasma 96.6 0.0014 4.9E-08 62.1 4.3 27 153-179 4-30 (180)
405 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00096 3.3E-08 69.8 3.2 30 155-184 25-54 (359)
406 2zts_A Putative uncharacterize 96.6 0.0037 1.3E-07 62.2 7.6 37 150-186 26-66 (251)
407 1aky_A Adenylate kinase; ATP:A 96.6 0.0015 5.1E-08 64.1 4.5 31 428-458 5-35 (220)
408 2cdn_A Adenylate kinase; phosp 96.5 0.0016 5.5E-08 62.8 4.5 30 429-458 22-51 (201)
409 2jeo_A Uridine-cytidine kinase 96.5 0.0014 4.9E-08 65.4 4.2 32 150-181 21-52 (245)
410 2bbw_A Adenylate kinase 4, AK4 96.5 0.0017 5.8E-08 64.9 4.7 31 153-183 26-56 (246)
411 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.4E-08 62.6 3.7 24 429-452 5-28 (192)
412 1zd8_A GTP:AMP phosphotransfer 96.5 0.0015 5E-08 64.5 4.2 31 428-458 8-38 (227)
413 1tev_A UMP-CMP kinase; ploop, 96.5 0.0015 5.2E-08 62.3 4.2 30 428-457 4-33 (196)
414 4e22_A Cytidylate kinase; P-lo 96.5 0.0021 7.2E-08 64.6 5.3 31 153-183 26-56 (252)
415 2j41_A Guanylate kinase; GMP, 96.5 0.0015 5E-08 63.2 4.0 28 151-178 3-30 (207)
416 1qf9_A UMP/CMP kinase, protein 96.5 0.0017 5.8E-08 61.9 4.4 30 428-457 7-36 (194)
417 3thx_B DNA mismatch repair pro 96.5 0.0038 1.3E-07 73.7 8.2 107 428-546 674-800 (918)
418 3crm_A TRNA delta(2)-isopenten 96.5 0.0011 3.6E-08 68.8 3.0 36 428-463 6-41 (323)
419 3thx_A DNA mismatch repair pro 96.5 0.0057 2E-07 72.4 9.6 26 151-176 659-684 (934)
420 2r6a_A DNAB helicase, replicat 96.5 0.0035 1.2E-07 68.8 7.3 38 423-460 199-240 (454)
421 3be4_A Adenylate kinase; malar 96.5 0.0015 5.3E-08 63.9 3.8 30 429-458 7-36 (217)
422 2zts_A Putative uncharacterize 96.5 0.0039 1.3E-07 62.0 6.9 38 423-460 26-67 (251)
423 1ly1_A Polynucleotide kinase; 96.5 0.0013 4.4E-08 62.0 3.1 30 429-460 4-34 (181)
424 3e70_C DPA, signal recognition 96.5 0.014 4.6E-07 60.9 11.2 28 151-178 126-153 (328)
425 2jaq_A Deoxyguanosine kinase; 96.5 0.0021 7.2E-08 61.8 4.7 28 156-183 2-29 (205)
426 3dl0_A Adenylate kinase; phosp 96.5 0.0016 5.6E-08 63.5 3.9 29 430-458 3-31 (216)
427 2pt5_A Shikimate kinase, SK; a 96.4 0.0018 6.1E-08 60.3 4.0 28 430-457 3-30 (168)
428 3r20_A Cytidylate kinase; stru 96.4 0.0024 8.3E-08 63.1 5.1 31 154-184 9-39 (233)
429 2if2_A Dephospho-COA kinase; a 96.4 0.0015 5.2E-08 63.1 3.6 29 156-185 3-31 (204)
430 3nwj_A ATSK2; P loop, shikimat 96.4 0.0014 4.8E-08 65.7 3.4 30 428-457 49-78 (250)
431 3c8u_A Fructokinase; YP_612366 96.4 0.0018 6.2E-08 62.9 4.1 28 152-179 20-47 (208)
432 3dm5_A SRP54, signal recogniti 96.4 0.01 3.5E-07 64.1 10.3 70 427-496 100-192 (443)
433 2vli_A Antibiotic resistance p 96.4 0.0013 4.5E-08 62.2 3.0 29 428-456 6-34 (183)
434 3fb4_A Adenylate kinase; psych 96.4 0.0018 6E-08 63.3 4.0 29 430-458 3-31 (216)
435 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0021 7.1E-08 64.9 4.6 37 428-464 5-44 (260)
436 2bwj_A Adenylate kinase 5; pho 96.4 0.0018 6.1E-08 62.1 3.9 30 428-457 13-42 (199)
437 1ak2_A Adenylate kinase isoenz 96.4 0.0022 7.6E-08 63.5 4.7 30 429-458 18-47 (233)
438 2pez_A Bifunctional 3'-phospho 96.4 0.002 6.8E-08 60.9 4.1 36 428-463 6-44 (179)
439 1vma_A Cell division protein F 96.4 0.0034 1.2E-07 64.9 6.1 71 426-496 103-196 (306)
440 1g5t_A COB(I)alamin adenosyltr 96.4 0.014 4.8E-07 55.6 9.9 115 429-561 30-177 (196)
441 1p9r_A General secretion pathw 96.4 0.007 2.4E-07 65.3 8.8 71 153-223 166-246 (418)
442 2pbr_A DTMP kinase, thymidylat 96.4 0.0026 9E-08 60.6 4.9 31 156-186 2-35 (195)
443 1cke_A CK, MSSA, protein (cyti 96.4 0.0024 8.2E-08 62.7 4.7 29 429-457 7-35 (227)
444 2v54_A DTMP kinase, thymidylat 96.4 0.0022 7.6E-08 61.8 4.4 34 153-186 3-37 (204)
445 1lvg_A Guanylate kinase, GMP k 96.4 0.0018 6.1E-08 62.5 3.6 27 153-179 3-29 (198)
446 1e4v_A Adenylate kinase; trans 96.4 0.0023 7.8E-08 62.5 4.4 30 156-185 2-31 (214)
447 1g5t_A COB(I)alamin adenosyltr 96.4 0.015 5.1E-07 55.5 9.9 102 155-266 29-163 (196)
448 2cbz_A Multidrug resistance-as 96.4 0.001 3.5E-08 66.2 1.9 30 149-178 26-55 (237)
449 4a1f_A DNAB helicase, replicat 96.4 0.021 7.2E-07 59.6 11.9 47 140-186 31-81 (338)
450 1w4r_A Thymidine kinase; type 96.3 0.015 5E-07 55.4 9.6 66 430-498 23-103 (195)
451 1wb9_A DNA mismatch repair pro 96.3 0.0076 2.6E-07 70.4 9.2 26 152-177 605-630 (800)
452 2px0_A Flagellar biosynthesis 96.3 0.012 4E-07 60.6 9.7 35 153-187 104-142 (296)
453 2xb4_A Adenylate kinase; ATP-b 96.3 0.0027 9.2E-08 62.5 4.7 29 156-184 2-30 (223)
454 2a5y_B CED-4; apoptosis; HET: 96.3 0.023 7.8E-07 63.9 13.0 143 397-578 132-307 (549)
455 1zak_A Adenylate kinase; ATP:A 96.3 0.002 6.7E-08 63.3 3.7 30 428-457 6-35 (222)
456 2px0_A Flagellar biosynthesis 96.3 0.016 5.5E-07 59.5 10.7 34 427-460 105-142 (296)
457 2plr_A DTMP kinase, probable t 96.3 0.0024 8.4E-08 61.8 4.3 28 154-181 4-31 (213)
458 1b0u_A Histidine permease; ABC 96.3 0.0011 3.9E-08 66.9 1.9 31 149-179 27-57 (262)
459 3asz_A Uridine kinase; cytidin 96.3 0.0022 7.5E-08 62.3 3.9 28 152-179 4-31 (211)
460 3tau_A Guanylate kinase, GMP k 96.3 0.002 6.9E-08 62.6 3.7 28 153-180 7-34 (208)
461 1m7g_A Adenylylsulfate kinase; 96.3 0.0029 9.9E-08 61.6 4.8 40 151-190 22-65 (211)
462 3tlx_A Adenylate kinase 2; str 96.3 0.0026 9E-08 63.5 4.5 38 426-465 28-65 (243)
463 2qor_A Guanylate kinase; phosp 96.3 0.0025 8.4E-08 61.7 4.2 30 151-180 9-38 (204)
464 3bk7_A ABC transporter ATP-bin 96.3 0.0049 1.7E-07 69.9 7.3 28 151-178 379-406 (607)
465 1ukz_A Uridylate kinase; trans 96.3 0.0024 8.1E-08 61.6 4.1 30 429-458 17-46 (203)
466 4a82_A Cystic fibrosis transme 96.3 0.0053 1.8E-07 69.5 7.4 45 418-462 356-404 (578)
467 1nks_A Adenylate kinase; therm 96.3 0.0018 6.1E-08 61.7 3.0 24 156-179 3-26 (194)
468 1jjv_A Dephospho-COA kinase; P 96.3 0.0021 7.2E-08 62.2 3.6 27 156-183 4-30 (206)
469 2oap_1 GSPE-2, type II secreti 96.3 0.0033 1.1E-07 69.7 5.5 71 426-496 259-343 (511)
470 2z0h_A DTMP kinase, thymidylat 96.3 0.0033 1.1E-07 60.1 4.9 31 156-186 2-35 (197)
471 2yvu_A Probable adenylyl-sulfa 96.3 0.0045 1.5E-07 58.8 5.8 37 152-188 11-50 (186)
472 3a00_A Guanylate kinase, GMP k 96.3 0.0022 7.5E-08 61.1 3.6 25 155-179 2-26 (186)
473 1mv5_A LMRA, multidrug resista 96.3 0.0013 4.3E-08 65.9 1.9 31 149-179 23-53 (243)
474 1sgw_A Putative ABC transporte 96.3 0.001 3.5E-08 65.0 1.3 30 150-179 31-60 (214)
475 1tf7_A KAIC; homohexamer, hexa 96.3 0.012 4.2E-07 65.7 10.2 77 150-226 277-384 (525)
476 3ney_A 55 kDa erythrocyte memb 96.2 0.003 1E-07 60.7 4.4 31 149-179 14-44 (197)
477 2bdt_A BH3686; alpha-beta prot 96.2 0.0029 1E-07 60.2 4.3 35 155-190 3-37 (189)
478 2jaq_A Deoxyguanosine kinase; 96.2 0.0026 8.8E-08 61.2 3.9 28 430-457 3-30 (205)
479 3qf4_B Uncharacterized ABC tra 96.2 0.00097 3.3E-08 75.9 1.0 45 418-462 370-418 (598)
480 2zu0_C Probable ATP-dependent 96.2 0.0016 5.4E-08 66.1 2.5 30 149-178 41-70 (267)
481 1z6g_A Guanylate kinase; struc 96.2 0.002 6.8E-08 63.2 3.1 34 418-451 12-47 (218)
482 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0011 3.9E-08 69.2 1.3 29 429-457 26-54 (359)
483 1e4v_A Adenylate kinase; trans 96.2 0.0025 8.6E-08 62.1 3.8 29 430-458 3-31 (214)
484 3lnc_A Guanylate kinase, GMP k 96.2 0.0014 4.7E-08 64.9 1.8 31 149-179 22-53 (231)
485 2if2_A Dephospho-COA kinase; a 96.2 0.0026 8.9E-08 61.4 3.8 28 429-457 3-30 (204)
486 3j16_B RLI1P; ribosome recycli 96.2 0.0068 2.3E-07 68.7 7.7 24 155-178 379-402 (608)
487 3qf4_A ABC transporter, ATP-bi 96.2 0.0007 2.4E-08 76.9 -0.4 46 418-463 358-407 (587)
488 2oap_1 GSPE-2, type II secreti 96.2 0.0014 4.7E-08 72.8 1.9 73 151-223 257-343 (511)
489 2qt1_A Nicotinamide riboside k 96.2 0.002 6.7E-08 62.5 2.9 32 151-182 18-50 (207)
490 1ji0_A ABC transporter; ATP bi 96.2 0.0012 4.2E-08 65.8 1.4 31 149-179 27-57 (240)
491 1s96_A Guanylate kinase, GMP k 96.2 0.003 1E-07 61.9 4.2 29 151-179 13-41 (219)
492 2xb4_A Adenylate kinase; ATP-b 96.2 0.003 1E-07 62.1 4.2 33 430-464 3-35 (223)
493 2pze_A Cystic fibrosis transme 96.2 0.0013 4.4E-08 65.1 1.4 31 149-179 29-59 (229)
494 2v54_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 60.5 4.4 32 428-459 5-37 (204)
495 2grj_A Dephospho-COA kinase; T 96.2 0.0029 1E-07 60.6 3.9 30 155-184 13-42 (192)
496 2d2e_A SUFC protein; ABC-ATPas 96.2 0.0015 5.2E-08 65.6 1.9 29 149-177 24-52 (250)
497 1htw_A HI0065; nucleotide-bind 96.2 0.0027 9.4E-08 58.8 3.5 25 427-451 33-57 (158)
498 2ghi_A Transport protein; mult 96.2 0.0015 5.3E-08 65.9 1.9 31 149-179 41-71 (260)
499 3kl4_A SRP54, signal recogniti 96.1 0.011 3.6E-07 64.0 8.5 71 427-497 97-190 (433)
500 1nks_A Adenylate kinase; therm 96.1 0.0022 7.6E-08 61.0 2.9 35 429-463 3-40 (194)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.9e-123 Score=1069.50 Aligned_cols=717 Identities=80% Similarity=1.274 Sum_probs=565.8
Q ss_pred CCHHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccCCcccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEE
Q 005014 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEF 80 (719)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f 80 (719)
||+.+|+|+|+++||.|+|+++.++++|++|+|+|+..+..++.+..+..++++||....+||..||+|.+..++..+.|
T Consensus 84 ~~~~~r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f 163 (806)
T 3cf2_A 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEF 163 (806)
T ss_dssp ECHHHHHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEE
T ss_pred eCHHHHHhcCCCCCCEEEEEECCCCCcCCEEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEE
Confidence 68999999999999999999987889999999999998877777888899999999888899999999999988888999
Q ss_pred EEEEecCCceEEECCCceEEecCCCccccc-cccCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEE
Q 005014 81 KVIETDPPEYCVVAPDTEIFCEGEPVRRED-ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 159 (719)
Q Consensus 81 ~v~~~~p~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL 159 (719)
+|++++|.++++++++|.+.+.+.+..... ....+.++|+||||+++++++|++.+.+|++||++|..+|+.+++||||
T Consensus 164 ~V~~~~P~~~~~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL 243 (806)
T 3cf2_A 164 KVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243 (806)
T ss_dssp EEEEESSSSEEECCTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEE
T ss_pred EEEEEeCCCCeEECCCcEEEEeccccCcccccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEE
Confidence 999999999999999999998877765432 3356889999999999999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHH
Q 005014 160 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 239 (719)
Q Consensus 160 ~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~ 239 (719)
|||||||||+||+++|++++.+++.++++++.+++.|+++..++.+|+.|..+.||||||||+|.++++++...++..++
T Consensus 244 ~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~r 323 (806)
T 3cf2_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323 (806)
T ss_dssp ECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777788899
Q ss_pred HHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHh
Q 005014 240 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDT 319 (719)
Q Consensus 240 v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t 319 (719)
++.+|+.+|+++..+.+|+||++||+++.+|++++|+|||+++|+++.|+.++|.+||+.+++++.+..++++..+|..|
T Consensus 324 iv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T 403 (806)
T 3cf2_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403 (806)
T ss_dssp HHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHC
T ss_pred HHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccCCCccccccccH
Q 005014 320 HGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLE 399 (719)
Q Consensus 320 ~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~ 399 (719)
+||+++||..+|++|++.++++..+.+.........+......++.+||..|+..+.|+.+++...+.|+++|++++|++
T Consensus 404 ~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~ 483 (806)
T 3cf2_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 483 (806)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHH
Confidence 99999999999999999999988776666555555566667889999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHH
Q 005014 400 NVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIF 479 (719)
Q Consensus 400 ~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f 479 (719)
++|+.|.+.+.||+.+++.|.++|+.+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++++++.+|
T Consensus 484 ~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF 563 (806)
T 3cf2_A 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563 (806)
T ss_dssp HHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEE
Q 005014 480 DKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 559 (719)
Q Consensus 480 ~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i 559 (719)
+.|+...||||||||||+++++|+...++.++..+|++++||++|||+....+|+||+|||+||.||||++||||||++|
T Consensus 564 ~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i 643 (806)
T 3cf2_A 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEE
T ss_pred HHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEE
Confidence 99999999999999999999999765555567789999999999999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccc
Q 005014 560 YIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEED 639 (719)
Q Consensus 560 ~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (719)
|||+||.++|.+||+.++++.++..++|++.||+.|+||||+||+++|++|++.|+++.+................+...
T Consensus 644 ~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~ 723 (806)
T 3cf2_A 644 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 723 (806)
T ss_dssp EC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-------------------
T ss_pred EECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998765543332222222222233
Q ss_pred cccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCC----CCCCCCCCCCCCCCCCC
Q 005014 640 VEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGA----DGGSDPFASSAGGADDD 715 (719)
Q Consensus 640 ~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 715 (719)
..+..+.|+++||++|+++++||||++++++|++|+++|+++|+|+. |++|.....+. ..+.....+.++...+|
T Consensus 724 ~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (806)
T 3cf2_A 724 EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDD 802 (806)
T ss_dssp ----CCC----CCTTTC---------------CCCC--------------------------------------------
T ss_pred cccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCccc-cccCCCCcCCCCCCCCCCCcccccccCCCCcc
Confidence 34456789999999999999999999999999999999999999998 78776533321 11222222233455678
Q ss_pred CCC
Q 005014 716 DLY 718 (719)
Q Consensus 716 ~~~ 718 (719)
|+|
T Consensus 803 ~~~ 805 (806)
T 3cf2_A 803 DLY 805 (806)
T ss_dssp ---
T ss_pred ccc
Confidence 887
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=6.7e-96 Score=863.43 Aligned_cols=717 Identities=80% Similarity=1.279 Sum_probs=577.5
Q ss_pred CCHHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccCCcccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEE
Q 005014 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEF 80 (719)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f 80 (719)
||+.+|+|+|+++||.|+|+++.++++|++|+|+|.++++.++.+..++.|++++|....+||.+|++|.+..+++.+.|
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 163 (806)
T 1ypw_A 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEF 163 (806)
T ss_dssp CCHHHHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEE
T ss_pred ecHHHHhhcCCCCCCEEEEEECCCCCcCcEEEEeCCccchhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEE
Confidence 78999999999999999999976788999999999988777677777788999999877899999999999888888999
Q ss_pred EEEEecCCceEEECCCceEEecCCCccccc-cccCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEE
Q 005014 81 KVIETDPPEYCVVAPDTEIFCEGEPVRRED-ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 159 (719)
Q Consensus 81 ~v~~~~p~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL 159 (719)
+|++++|.+++++.++|.+.+...+..+.. ....+.++|++|+|+++++++|++.+.+|+.+|++|+++++.++.++||
T Consensus 164 ~v~~~~p~~~~~v~~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL 243 (806)
T 1ypw_A 164 KVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243 (806)
T ss_dssp EEEEETTTTCCBCCSSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEE
T ss_pred EEEeccCCCCceecCCeEEEecCccccchhhhcccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEE
Confidence 999999999999999999988877764432 2346788999999999999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHH
Q 005014 160 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 239 (719)
Q Consensus 160 ~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~ 239 (719)
+||||||||||++++|+.++.+++.+++.++.+.+.++.+..++.+|+.+..+.|+++|+||++.++++++...++..++
T Consensus 244 ~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 323 (806)
T 1ypw_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323 (806)
T ss_dssp CSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887777888899
Q ss_pred HHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHh
Q 005014 240 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDT 319 (719)
Q Consensus 240 v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t 319 (719)
+..+|+.++++...+..+++|++||+++.+++++++++||+..+.++.|+.++|.+|++.+++++.+..+.++..++..+
T Consensus 324 ~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t 403 (806)
T 1ypw_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403 (806)
T ss_dssp HHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSC
T ss_pred HHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhh
Confidence 99999999999988889999999999999999999999999999999999999999999999998888888999999999
Q ss_pred CCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccCCCccccccccH
Q 005014 320 HGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLE 399 (719)
Q Consensus 320 ~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~ 399 (719)
+||+++++..++.+++..++++....+......+.........++.+++..++....|+..++.....+.+.|++++|++
T Consensus 404 ~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~ 483 (806)
T 1ypw_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 483 (806)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCC
T ss_pred cCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccch
Confidence 99999999999999999888877665555444444445556778889999999999998888888889999999999999
Q ss_pred HHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHH
Q 005014 400 NVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIF 479 (719)
Q Consensus 400 ~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f 479 (719)
.+|+.|.+.+.++..+++.+.++++.++.++||+||||||||+||+++|++++.+|+.++++++.++|+|++++.++.+|
T Consensus 484 ~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f 563 (806)
T 1ypw_A 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563 (806)
T ss_dssp CHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHH
T ss_pred hhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEE
Q 005014 480 DKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 559 (719)
Q Consensus 480 ~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i 559 (719)
+.|+...|||+||||||+++..|+...++..+...+++++||++||++....+++||+|||+|+.||||++|||||+.+|
T Consensus 564 ~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i 643 (806)
T 1ypw_A 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCC
T ss_pred HHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCcee
Confidence 99999999999999999999888654333345678999999999999988889999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccc
Q 005014 560 YIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEED 639 (719)
Q Consensus 560 ~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (719)
+|++|+.++|..||+.++++.++..++++..+++.++||||+||.++|++|++.|+++.+................+...
T Consensus 644 ~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (806)
T 1ypw_A 644 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 723 (806)
T ss_dssp CCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC---------------------
T ss_pred ecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999988765443322222222222222
Q ss_pred cccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCCCCCCCCCCCCCC-----CCCC
Q 005014 640 VEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAG-----GADD 714 (719)
Q Consensus 640 ~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 714 (719)
..+..+.|+++||++|++.++||+|++++++|++|.++|+++++|+. |.++..-. ..++|..++..++| .+++
T Consensus 724 ~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~~~~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 801 (806)
T 1ypw_A 724 EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQ-GGAGPSQGSGGGTGGSVYTEDND 801 (806)
T ss_dssp ---CCTTTTTTSSCCCCCC-------------------------------------------------------------
T ss_pred cccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhccCCc-eecCCccc-ccCCCCCCCCCCCCCCCCCcccc
Confidence 23445689999999999999999999999999999999999999998 66654433 34444444444444 4667
Q ss_pred CCCCC
Q 005014 715 DDLYS 719 (719)
Q Consensus 715 ~~~~~ 719 (719)
|++|+
T Consensus 802 ~~~~~ 806 (806)
T 1ypw_A 802 DDLYG 806 (806)
T ss_dssp -----
T ss_pred hhhcC
Confidence 77874
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-58 Score=486.81 Aligned_cols=274 Identities=39% Similarity=0.690 Sum_probs=248.4
Q ss_pred CCCcccceeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeE
Q 005014 376 NPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 455 (719)
Q Consensus 376 ~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~ 455 (719)
.|........+.|+++|+||||++++|+.|++.+.+|+.+|+.|.++|+++++|+|||||||||||++|+++|++++.+|
T Consensus 131 ~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 131 DPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp SCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred CchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 45555667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEE
Q 005014 456 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 535 (719)
Q Consensus 456 i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~v 535 (719)
+.++++++.++|+|+++++++.+|..|+..+||||||||||+++++|..+.+..+....+++++||++|||+....+|+|
T Consensus 211 ~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~v 290 (405)
T 4b4t_J 211 IRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKI 290 (405)
T ss_dssp EEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred eEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 99999999999999999999999999999999999999999999998766544455678899999999999999999999
Q ss_pred EEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 005014 536 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 615 (719)
Q Consensus 536 i~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~ 615 (719)
|+|||+|+.||||++||||||++|+||+||.++|.+||+.++++.++..++|++.||+.|+|||||||+++|++|++.|+
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005014 616 RENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAF 674 (719)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~ 674 (719)
++. ...|+++||+.|++++.++..+..+..++.|
T Consensus 371 r~~-------------------------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 371 RER-------------------------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HTT-------------------------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred HcC-------------------------CCCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 753 3479999999999987665555555555555
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-55 Score=470.73 Aligned_cols=261 Identities=36% Similarity=0.661 Sum_probs=245.8
Q ss_pred eeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccc
Q 005014 383 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 462 (719)
Q Consensus 383 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~ 462 (719)
...+.|+++|+||||++++|+.|.+.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005014 463 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 542 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~ 542 (719)
+.++|+|++++.++.+|..|+..+||||||||||+++.+|.......+....+++++||++||++....+|+||+|||+|
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999999997765555667789999999999999999999999999999
Q ss_pred CCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 543 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 622 (719)
Q Consensus 543 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~ 622 (719)
+.|||||+||||||++|+|++||.++|.+||+.++++.++..++|++.||+.|+|||||||+++|++|++.|+++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~---- 407 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER---- 407 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred HHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHH
Q 005014 623 IERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADI 668 (719)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~ 668 (719)
...|+++||+.|++++.++.+++++
T Consensus 408 ---------------------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 408 ---------------------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp ---------------------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------------------CCccCHHHHHHHHHHHhCCCChhhH
Confidence 2369999999999988776665544
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-54 Score=468.83 Aligned_cols=271 Identities=41% Similarity=0.672 Sum_probs=246.6
Q ss_pred CCcccceeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEE
Q 005014 377 PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 456 (719)
Q Consensus 377 ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i 456 (719)
|........+.|+++|+||||++++|+.|.+.+.+|+.+|+.|.++|+++++|+|||||||||||++|+++|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 165 PLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp CCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred chhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 33334456678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEE
Q 005014 457 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 536 (719)
Q Consensus 457 ~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 536 (719)
.++++++.++|+|++++.++.+|..|+...||||||||||+++++|.......+....+++++||++|||+.+..+|+||
T Consensus 245 ~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 245 FSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp EEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred EEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 99999999999999999999999999999999999999999999997665555566788999999999999999999999
Q ss_pred EecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 005014 537 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 616 (719)
Q Consensus 537 ~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~ 616 (719)
+|||+|+.|||||+||||||++|+||+||.++|.+||+.++++.++..++|+..+|+.|+|||||||+++|++|++.|++
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHH
Q 005014 617 ENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQ 672 (719)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~ 672 (719)
+. ...|+++||..|++++.++...+....|+
T Consensus 405 ~~-------------------------~~~i~~~d~~~Al~~v~~~~k~e~~~e~~ 435 (437)
T 4b4t_L 405 DD-------------------------RDHINPDDLMKAVRKVAEVKKLEGTIEYQ 435 (437)
T ss_dssp TT-------------------------CSSBCHHHHHHHHHHHHHTCC--------
T ss_pred cC-------------------------CCCCCHHHHHHHHHHHHhccCcccchhhh
Confidence 54 23699999999999998877766555544
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-54 Score=466.58 Aligned_cols=267 Identities=34% Similarity=0.659 Sum_probs=240.5
Q ss_pred eeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccch
Q 005014 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463 (719)
Q Consensus 384 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l 463 (719)
+.+.|+++|+||||++++|+.|++.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 005014 464 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 543 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~ 543 (719)
.++|+|+++++++.+|..|+..+||||||||+|+++.+|+...+.......+++++||++||++....+|+||+|||+|+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 99999999999999999999999999999999999999976644445566789999999999999999999999999999
Q ss_pred CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 544 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 623 (719)
Q Consensus 544 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~ 623 (719)
.||||++||||||++|+|++|+.++|.+||+.++++.++..++|++.||+.|+|||||||+++|++|++.|+++.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred HHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 005014 624 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVS-DADIRKYQAFA 675 (719)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~-~~~~~~~~~~~ 675 (719)
...|+++||+.|++++.++.. .....+|.+|.
T Consensus 435 --------------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 --------------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp --------------------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred --------------------CCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 236999999999988754332 23456677773
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-54 Score=464.82 Aligned_cols=259 Identities=38% Similarity=0.660 Sum_probs=244.0
Q ss_pred ceeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEecc
Q 005014 382 ETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 461 (719)
Q Consensus 382 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~ 461 (719)
....+.|+++|+||||++++|+.|.+.+.+|+.+|+.|.++|+++++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 005014 462 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 541 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~ 541 (719)
++.++|+|++++.++.+|..|+...||||||||+|+++++|..+.+.......+++++||++||++.+..+|+||+|||+
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr 329 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR 329 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS
T ss_pred hhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999765444445567889999999999999999999999999
Q ss_pred CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005014 542 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 621 (719)
Q Consensus 542 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~ 621 (719)
|+.||||++||||||++|+||+||.++|.+||+.++++.++..++|++.||+.|+|||||||+++|++|++.|+++.
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~--- 406 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG--- 406 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT---
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred HHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCH
Q 005014 622 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSD 665 (719)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~ 665 (719)
...|+++||..|+++++|+.++
T Consensus 407 ----------------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 ----------------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp ----------------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred ----------------------CCCcCHHHHHHHHHHHhCCCCc
Confidence 2369999999999999998763
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-53 Score=462.23 Aligned_cols=264 Identities=40% Similarity=0.653 Sum_probs=246.5
Q ss_pred eeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccc
Q 005014 383 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 462 (719)
Q Consensus 383 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~ 462 (719)
...+.|+++|+||||++++|+.|.+.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005014 463 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 542 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~ 542 (719)
+.++|+|+++++++.+|..|+..+|||+||||+|+++..|.......+....+++++||++|||+.+..+|+||+|||+|
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred hhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999999997765555667889999999999999999999999999999
Q ss_pred CCCCcccCCCCCcceEEEeC-CCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005014 543 DIIDPALLRPGRLDQLIYIP-LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 621 (719)
Q Consensus 543 ~~ld~allrpgRf~~~i~~~-~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~ 621 (719)
+.||||++||||||+.|+|| +|+.++|..||+.++++.++..++|++.||+.|+|||||||+++|++|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Confidence 99999999999999999997 89999999999999999999999999999999999999999999999999998764
Q ss_pred HHHHHhhhcCCCcccccccccccccccHHHHHHHHhh-cCCCCCHHHHHHH
Q 005014 622 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKY-ARRSVSDADIRKY 671 (719)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~-~~~sv~~~~~~~~ 671 (719)
...|+++||++|+.. ++++.+.++++.|
T Consensus 399 ----------------------~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 399 ----------------------RYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp ----------------------CSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred ----------------------CCCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 236999999999975 6777776655444
No 9
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=3.6e-49 Score=438.93 Aligned_cols=400 Identities=81% Similarity=1.305 Sum_probs=351.7
Q ss_pred CCHHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccCCcccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEE
Q 005014 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEF 80 (719)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f 80 (719)
||+.+|+|+|+++||.|+|+++.+++.|++|+|.|+...+..+....++.+.+++.....+++..|+.+.+...++.+.|
T Consensus 84 ~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (489)
T 3hu3_A 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEF 163 (489)
T ss_dssp CCHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEE
T ss_pred ecHHHHhhcCCCCCCEEEEEECCCCCccCEEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEE
Confidence 78999999999999999999987899999999999988777666678898899988776788999999999988888999
Q ss_pred EEEEecCCceEEECCCceEEecCCCccccc-cccCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEE
Q 005014 81 KVIETDPPEYCVVAPDTEIFCEGEPVRRED-ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 159 (719)
Q Consensus 81 ~v~~~~p~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL 159 (719)
++...+|..++.++++|.+.+.+.+...+. ......++|++|+|++.++++|++.+..++++|++|..++..++.++||
T Consensus 164 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL 243 (489)
T 3hu3_A 164 KVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243 (489)
T ss_dssp EEEEEESSSEEEECTTCEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEE
T ss_pred EEEeecCCCceEEcCCeEEEEccCcccccccccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEE
Confidence 999999999999999999988877764322 1234567999999999999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHH
Q 005014 160 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 239 (719)
Q Consensus 160 ~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~ 239 (719)
+||||||||++|++++..++.+|+.++|.++.+.+.|+....++.+|+.+....|++|||||||.+.++++...++...+
T Consensus 244 ~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~ 323 (489)
T 3hu3_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323 (489)
T ss_dssp ECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887777788889
Q ss_pred HHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHh
Q 005014 240 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDT 319 (719)
Q Consensus 240 v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t 319 (719)
+..+|+..|++......++||++||.++.+++++++++||+..++++.|+.++|.+||+.+++.+.+..+.++..++..+
T Consensus 324 ~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t 403 (489)
T 3hu3_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403 (489)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTC
T ss_pred HHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHc
Confidence 99999999999888889999999999999999999999999999999999999999999999998888888899999999
Q ss_pred CCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccCCCccccccccH
Q 005014 320 HGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLE 399 (719)
Q Consensus 320 ~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~ 399 (719)
+||+++|+..+|.+|++.++++....+......+.........++.+||..|+..+.|+.+++...+.|+++|+||||..
T Consensus 404 ~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred cCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 99999999999999999999888776666655555555566789999999999999999999999999999999999986
Q ss_pred H
Q 005014 400 N 400 (719)
Q Consensus 400 ~ 400 (719)
.
T Consensus 484 ~ 484 (489)
T 3hu3_A 484 H 484 (489)
T ss_dssp -
T ss_pred c
Confidence 4
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4.9e-47 Score=399.43 Aligned_cols=300 Identities=82% Similarity=1.284 Sum_probs=261.7
Q ss_pred ccceeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEe
Q 005014 380 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 459 (719)
Q Consensus 380 ~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~ 459 (719)
+++...+.|.++|++++|++.+++.|.+.+.+++.+++.+..+++.+++++|||||||||||++|+++|++++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEec
Q 005014 460 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 539 (719)
Q Consensus 460 ~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~at 539 (719)
++++.++|+|++++.++.+|+.++...|+||||||||.+...|+...++..+...+++++||..|+++....+++||+||
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999886654444556788999999999999888899999999
Q ss_pred CCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q 005014 540 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 619 (719)
Q Consensus 540 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~ 619 (719)
|+++.||++++|||||+..+++++|+.++|.+||+.++++.++..+++++.++..+.||||+||+++|++|++.|.++.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999876
Q ss_pred HHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 005014 620 EKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 679 (719)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~ 679 (719)
................++....+....|+++||+.|++.++||++.+++++|++|.++|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 543211100000000011111123468999999999999999999999999999999984
No 11
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-44 Score=384.94 Aligned_cols=247 Identities=43% Similarity=0.777 Sum_probs=230.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|+||||+++++++|++.+.+|++||++|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
+|.|+++..++.+|+.|+...||||||||+|.+++.+.... +...++++.+|++.|+++....+|+||+|||+|+.+
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 99999999999999999999999999999999998764332 234567889999999999999999999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
||+++|+|||++.|+++.|+.++|.+||+.+++++++..++++..+|+.|+||+|+||..+|++|++.++++.
T Consensus 301 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~------- 373 (405)
T 4b4t_J 301 DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER------- 373 (405)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred cchhhHhHhhccccchHHHHHhhccCC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTSN 376 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~~ 376 (719)
...++.+||..|+..+.
T Consensus 374 ----------~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 374 ----------RIHVTQEDFELAVGKVM 390 (405)
T ss_dssp ----------CSBCCHHHHHHHHHHHH
T ss_pred ----------CCCcCHHHHHHHHHHHh
Confidence 23478899999887653
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.7e-44 Score=380.47 Aligned_cols=292 Identities=35% Similarity=0.646 Sum_probs=249.4
Q ss_pred eeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-CCeEEEEeccc
Q 005014 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPE 462 (719)
Q Consensus 384 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-~~~~i~v~~~~ 462 (719)
..+.|+++|++|+|++.+|+.|.+.+.+|+.+++.+.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 35678999999999999999999999999999998875 46677899999999999999999999999 89999999999
Q ss_pred hhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-CCCcEEEEEecCC
Q 005014 463 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 541 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~atn~ 541 (719)
+.++|+|++++.++.+|+.++...|+||||||||.+.+.|+.. ......+++++||++|+++. ...+++||+|||+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999887643 24567899999999999986 4678999999999
Q ss_pred CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q 005014 542 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 620 (719)
Q Consensus 542 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~ 620 (719)
|+.+|++++| ||+..+++++|+.++|..||+.++++.+.. .+.++..|++.+.||||+||.++|++|++.|+++.+.
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999887654 6788999999999999999999999999999998754
Q ss_pred HHHHHHhhh-cC---C--------------C--ccc--cccccc--ccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005014 621 KDIERERRR-SE---N--------------P--EAM--EEDVED--EVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQ 676 (719)
Q Consensus 621 ~~~~~~~~~-~~---~--------------~--~~~--~~~~~~--~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~ 676 (719)
......... .. . . ..+ .+...+ ....|+++||..|++.++||+|.+++++|++|.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~ 316 (322)
T 1xwi_A 237 ATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTE 316 (322)
T ss_dssp CSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 210000000 00 0 0 000 000011 1347999999999999999999999999999999
Q ss_pred HHhhc
Q 005014 677 TLQQS 681 (719)
Q Consensus 677 ~~~~~ 681 (719)
+|++.
T Consensus 317 ~~~~~ 321 (322)
T 1xwi_A 317 DFGQE 321 (322)
T ss_dssp TTCSC
T ss_pred HHccC
Confidence 99764
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.8e-45 Score=421.20 Aligned_cols=285 Identities=37% Similarity=0.651 Sum_probs=249.0
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
...|.++|+||+|+++.++.|++.+.+|+.+|+.|..+|..+++|+|||||||||||+||+++|++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 544 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ 544 (719)
++|+|+++++++.+|+.|+...||||||||||+++++|+... +....+++++||++||++....+|+||+|||+|+.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 999999999999999999999999999999999999887542 34678999999999999998889999999999999
Q ss_pred CCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 545 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 624 (719)
Q Consensus 545 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~ 624 (719)
||||++||||||+.|+|++||.++|.+||+.++++.++..++|+..+|..|.||+|+||.++|++|++.|+++.......
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987543210
Q ss_pred HHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCC-----------CHHHHHHHHHHHHHHhh
Q 005014 625 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSV-----------SDADIRKYQAFAQTLQQ 680 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv-----------~~~~~~~~~~~~~~~~~ 680 (719)
.. ... .........|+++||..|+..++|+- +-+++-.+++..+.+..
T Consensus 433 ------~~-~~~-~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e 491 (806)
T 3cf2_A 433 ------ED-ETI-DAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQE 491 (806)
T ss_dssp ------TC-CCC-SHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTT
T ss_pred ------cc-ccc-chhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHH
Confidence 00 000 00011234699999999999887653 33444445555555544
No 14
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-43 Score=376.77 Aligned_cols=249 Identities=45% Similarity=0.742 Sum_probs=230.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|+||||++++++.|++.+.+|++||++|+.+|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
+|.|+++..++.+|..|+...||||||||+|.++..+.... .....+.+.+|++.++++....+|+||+|||+|+.+
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 99999999999999999999999999999999998874332 223467788999999999988999999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
|++++|+|||++.|+++.|+.++|.+||+.+++++.+..++++..+|..|+||+|+||..+|++|++.++++..
T Consensus 335 DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~------ 408 (437)
T 4b4t_I 335 DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR------ 408 (437)
T ss_dssp CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cchhhHhHhhccccchHHHHHhhccCCCC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTSNPS 378 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps 378 (719)
..++.+||..|+..+.++
T Consensus 409 -----------~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 409 -----------MQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp -----------SCBCHHHHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHHhCC
Confidence 347889999998766544
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.2e-44 Score=370.12 Aligned_cols=266 Identities=49% Similarity=0.869 Sum_probs=219.7
Q ss_pred ccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 386 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
+.|+++|+||+|++++|+.|.+.+.+|+.+++.++++++.+++|++|+||||||||+|++++|++++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 005014 466 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 545 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l 545 (719)
+|.|++++.++.+|+.++...|+++|+||+|.++..|+... .+...+++++++.+|++......++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 99999999999999999999999999999999987764321 223457899999999999988899999999999999
Q ss_pred CcccCCCCCcceEEEeCCCCHHHHHHHHHHHhcc---CCCCCccCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q 005014 546 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK---SPVSKDVDLRALAKYT--QGFSGADITEICQRACKYAIRENIE 620 (719)
Q Consensus 546 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~---~~~~~~~d~~~la~~~--~~~sg~di~~~~~~A~~~a~~~~~~ 620 (719)
||+++||||||+.|++++|+.++|.+||+.++++ .++..++|++.+|..+ +||||+||.++|++|++.|+++.+.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999854 4567789999999975 5999999999999999999987653
Q ss_pred HHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHH
Q 005014 621 KDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADI 668 (719)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~ 668 (719)
.... ........|+++||+.|++.++||++++++
T Consensus 240 ~~~~--------------~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 240 RQKS--------------GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp ------------------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred hccc--------------cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 2210 001123479999999999999999998765
No 16
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-42 Score=376.94 Aligned_cols=251 Identities=38% Similarity=0.669 Sum_probs=232.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|+||||++++++.|++.+.+|+++|++|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCch---HHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~---~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
+|.|+++..++.+|..|....||||||||+|.++..+..... ....+++.+|++.|+++....+|+||+|||+|+.+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 999999999999999999999999999999999988754432 23456778999999999988899999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
||+++|+|||++.|+++.|+.++|.+||+.+++++.+..++++..+|+.|+||+|+||..+|++|++.++++..
T Consensus 334 D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~------ 407 (434)
T 4b4t_M 334 DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ------ 407 (434)
T ss_dssp CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999998999999999999999999999999999998887542
Q ss_pred cchhhHhHhhccccchHHHHHhhccCCCCcc
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTSNPSAL 380 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 380 (719)
..++.+||..|+..+.|+..
T Consensus 408 -----------~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 408 -----------SSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp -----------SSBCHHHHHHHHHSCSSSCC
T ss_pred -----------CCcCHHHHHHHHHHHhCCCC
Confidence 34788999999999887643
No 17
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-42 Score=372.60 Aligned_cols=246 Identities=42% Similarity=0.725 Sum_probs=228.0
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
++.|+++..++.+|..|+...||||||||+|.++..+.... .....+.+.+++..|++.....+|+||+|||+|+.+
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 99999999999999999999999999999999998875432 233456778899999999888999999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
|++++|+|||++.|+++.|+.++|.+||+.+++++.+..++++..+|+.|+||+|+||..+|++|++.++++..
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~------ 435 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR------ 435 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred cchhhHhHhhccccchHHHHHhhccC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
..++.+||..|+..+
T Consensus 436 -----------~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 436 -----------KVATEKDFLKAVDKV 450 (467)
T ss_dssp -----------SSBCHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 246788898887665
No 18
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-43 Score=378.12 Aligned_cols=249 Identities=40% Similarity=0.728 Sum_probs=230.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|+||||++++++.|++.+.+|++||++|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
+|.|+++..++.+|..|....||||||||+|.++..+.... +....+++.+|+..|+++....+|+||+|||+|+.+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999998774332 233467788999999999988899999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
||+++|+|||++.|+++.|+.++|.+||+.+++++.+..++++..+|+.|+||+|+||..+|.+|++.++++..
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~------ 407 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR------ 407 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999998899999999999999999999999999998887532
Q ss_pred cchhhHhHhhccccchHHHHHhhccCCCC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTSNPS 378 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps 378 (719)
..++.+||..|+..+.++
T Consensus 408 -----------~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 -----------DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp -----------SSBCHHHHHHHHHHHHHT
T ss_pred -----------CCCCHHHHHHHHHHHHhc
Confidence 247888999998776544
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.1e-42 Score=369.95 Aligned_cols=294 Identities=35% Similarity=0.636 Sum_probs=246.6
Q ss_pred eeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccc
Q 005014 383 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 462 (719)
Q Consensus 383 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~ 462 (719)
...+.|+++|++++|++.+++.|.+.+.+|..+++.+.. +..+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 456778999999999999999999999999999988877 5667889999999999999999999999999999999999
Q ss_pred hhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-CCCcEEEEEecCC
Q 005014 463 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 541 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~atn~ 541 (719)
+.++|+|++++.++.+|+.++...|+||||||||.+...|+.. ......+++++|+..|+++. ...+++||+|||+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 9999999999999999999999999999999999999887543 23467899999999999984 5678999999999
Q ss_pred CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q 005014 542 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 620 (719)
Q Consensus 542 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~ 620 (719)
|+.||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..+++.++||||+||.++|++|.+.|+++...
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999999887654 6778999999999999999999999999999998754
Q ss_pred HHHHHHhhh--cC---------CC---ccc--ccc--cccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcc
Q 005014 621 KDIERERRR--SE---------NP---EAM--EED--VEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSR 682 (719)
Q Consensus 621 ~~~~~~~~~--~~---------~~---~~~--~~~--~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~~~ 682 (719)
......... .. .+ ..+ .+. .......|+++||..|++.++||++.+++++|++|.++|++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~~ 321 (322)
T 3eie_A 242 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 321 (322)
T ss_dssp CEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC---
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 310000000 00 00 000 000 0112357999999999999999999999999999999998754
No 20
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-41 Score=368.80 Aligned_cols=245 Identities=42% Similarity=0.685 Sum_probs=228.0
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|+||||++++++.|++.+.+|+++|+.|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
++.|+++..++.+|..|+...|||+||||+|.++..+... .+....+++.+|++.|+++....+|+||+|||+|+.+
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999876432 2334578899999999999998999999999999999
Q ss_pred CHHhhccCCCceEEEeC-CCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccc
Q 005014 270 DPALRRFGRFDREIDIG-VPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 348 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~-~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 348 (719)
||+++|+|||++.|++| +|+..+|..||+.+++++.+..++++..+|..|+||+|+||..+|++|++.++++..
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~----- 399 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR----- 399 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-----
Confidence 99999999999999996 899999999999999999998899999999999999999999999999999887642
Q ss_pred ccchhhHhHhhccccchHHHHHhhcc
Q 005014 349 EDETIDAEILNSMAVTDEHFKTALGT 374 (719)
Q Consensus 349 ~~~~~~~~~~~~~~v~~~~~~~al~~ 374 (719)
..++.+||..|+..
T Consensus 400 ------------~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 400 ------------YVILQSDLEEAYAT 413 (428)
T ss_dssp ------------SSBCHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHH
Confidence 34788999998865
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=6.7e-42 Score=368.09 Aligned_cols=292 Identities=35% Similarity=0.639 Sum_probs=237.5
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
...|.+.|++++|++.+++.|.+.+.+|+.+++.+.. +..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 4567899999999999999999999999999998887 667788999999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCC-CCcEEEEEecCCCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNRPD 543 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~atn~~~ 543 (719)
++|+|++++.++.+|..++...|+||||||||.+...|+.. ......+++++||..|+++.. ..+++||+|||+|+
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999999887543 245678899999999999864 56899999999999
Q ss_pred CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 544 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 622 (719)
Q Consensus 544 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~ 622 (719)
.||++++| ||+..+++++|+.++|..||+.++++.+.. .+.++..|++.++||+|+||.++|++|++.|+++.....
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 999999999999999999999999887653 678899999999999999999999999999998864321
Q ss_pred HH------HHhh--h---cCCCc---cc--ccc--cccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcc
Q 005014 623 IE------RERR--R---SENPE---AM--EED--VEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSR 682 (719)
Q Consensus 623 ~~------~~~~--~---~~~~~---~~--~~~--~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~~~ 682 (719)
.. .... . ..... .+ .+. .......|+++||..|++.++||++.+++.+|++|.++|++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~~ 354 (355)
T 2qp9_X 277 HFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 354 (355)
T ss_dssp EEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC---
T ss_pred hhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC
Confidence 00 0000 0 00000 00 000 0112357999999999999999999999999999999998754
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4.6e-41 Score=371.97 Aligned_cols=292 Identities=33% Similarity=0.621 Sum_probs=239.0
Q ss_pred eeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-CCeEEEEeccc
Q 005014 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPE 462 (719)
Q Consensus 384 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-~~~~i~v~~~~ 462 (719)
....|.++|++++|++.+++.|.+.+.+|+.+++.|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 44568899999999999999999999999999888875 45677899999999999999999999999 89999999999
Q ss_pred hhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-CCCcEEEEEecCC
Q 005014 463 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 541 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~atn~ 541 (719)
+.++|+|++++.++.+|..++...|+||||||||.+.+.|+.. ......+++++||+.|+++. ...+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999877643 24567899999999999986 3678999999999
Q ss_pred CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q 005014 542 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 620 (719)
Q Consensus 542 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~ 620 (719)
|+.||++++| ||+.++++++|+.++|..||+.++++.+.. .+.++..|++.++||||+||.++|++|++.|+++.+.
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999887653 6788999999999999999999999999999998754
Q ss_pred HHHHHHhhhcC--------CC------------cccc--cccc--cccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005014 621 KDIERERRRSE--------NP------------EAME--EDVE--DEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQ 676 (719)
Q Consensus 621 ~~~~~~~~~~~--------~~------------~~~~--~~~~--~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~ 676 (719)
........... +. ..+. +... ...+.|+++||..|++.++||+|.+++..|++|.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~ 438 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTE 438 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTS
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 31000000000 00 0000 0001 12357999999999999999999999999999999
Q ss_pred HHhhc
Q 005014 677 TLQQS 681 (719)
Q Consensus 677 ~~~~~ 681 (719)
+|++.
T Consensus 439 ~~~~~ 443 (444)
T 2zan_A 439 DFGQE 443 (444)
T ss_dssp SCTTT
T ss_pred HHcCC
Confidence 88764
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=9.8e-38 Score=343.83 Aligned_cols=249 Identities=40% Similarity=0.760 Sum_probs=221.9
Q ss_pred cCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhh
Q 005014 387 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 466 (719)
Q Consensus 387 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 466 (719)
.+.++|++++|++.+++.+.+.+.+ +..+..+.+++...++|+||+||||||||++|+++|++.+.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3568999999999999999998765 567888999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 005014 467 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 546 (719)
Q Consensus 467 ~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld 546 (719)
|+|.++..++.+|..|+...||||||||+|.+..+|+...+.......+++++||.+||++....+++||+|||+|+.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999988765333334455689999999999988778899999999999999
Q ss_pred cccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 547 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 626 (719)
Q Consensus 547 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~ 626 (719)
|+++|||||++.|+|++|+.++|.+|++.++++.++..++++..++..+.||+|+||.++|++|+..|.++.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~-------- 240 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG-------- 240 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999999988889999999999999999999999999999887543
Q ss_pred hhhcCCCcccccccccccccccHHHHHHHHhhcCC
Q 005014 627 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 661 (719)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~ 661 (719)
...|+.+||..|+..+.+
T Consensus 241 -----------------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 241 -----------------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp -----------------CSSBCHHHHHHHHHHHC-
T ss_pred -----------------CCeecHHHHHHHHHHHhc
Confidence 237999999999987643
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.1e-37 Score=321.46 Aligned_cols=273 Identities=45% Similarity=0.755 Sum_probs=232.4
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
...|.+.|++++|++.+++.|.+.+..++.+++.+..++..++.++||+||||||||++|+++|+.++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 544 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ 544 (719)
+.|.|..+..++.+|..++...|+||||||+|.+..+|............+.+..++..++++....+++||+|||.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999887654333344556788899999999888889999999999999
Q ss_pred CCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 545 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 624 (719)
Q Consensus 545 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~ 624 (719)
+|++++||+||+.++++++|+.++|.+||+.++++..+..++++..++..+.||+|++|+++|++|...|..+.
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~------ 242 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL------ 242 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999888888999999999999999999999999999988754
Q ss_pred HHhhhcCCCcccccccccccccccHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHhhcc
Q 005014 625 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR--SVSDADIRKYQAFAQTLQQSR 682 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~--sv~~~~~~~~~~~~~~~~~~~ 682 (719)
...|+.+||.+|+..+.+ +.+...-..|..|+.+|..+.
T Consensus 243 -------------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 243 -------------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp -------------------CSSBCHHHHHHHHHHHHHHHCCC------------------
T ss_pred -------------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 236999999999987643 344555788999998887643
No 25
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=2.3e-36 Score=310.93 Aligned_cols=250 Identities=40% Similarity=0.769 Sum_probs=220.8
Q ss_pred ccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 386 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
..+...|++++|++.+++.+.+.+.+ +.+++.+..++...+++++|+||||||||++|+++|++++.+++.++++++.+
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34678999999999999999988765 66777888888889999999999999999999999999999999999999999
Q ss_pred hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 005014 466 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 545 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l 545 (719)
.+.|.+++.++.+|+.++...|+++||||+|.+...++...+.......++++++|..|+++....+++||+|||+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 99999999999999999999999999999999988776443233334457899999999999888899999999999999
Q ss_pred CcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 546 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 625 (719)
Q Consensus 546 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~ 625 (719)
|++++|||||++.+++++|+.++|.+|++.++++.++..+.++..++..+.|||++||.++|++|+..|..+.
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~------- 236 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN------- 236 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999999999999999999888888999999999999999999999999999887643
Q ss_pred HhhhcCCCcccccccccccccccHHHHHHHHhhcCC
Q 005014 626 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 661 (719)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~ 661 (719)
...|+.+||..|+..+..
T Consensus 237 ------------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 237 ------------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp ------------------CSSBCHHHHHHHHHHHTT
T ss_pred ------------------CCcccHHHHHHHHHHHhc
Confidence 237999999999988754
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.9e-37 Score=329.16 Aligned_cols=276 Identities=37% Similarity=0.676 Sum_probs=234.3
Q ss_pred ccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 386 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
..+.+.|++++|++.+++.|.+.+.+++.+++.+...+ .+++++||+||||||||++|+++|.+++.+|+.++++++.+
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 35678999999999999999999999888888777654 56788999999999999999999999999999999999999
Q ss_pred hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCC--CCcEEEEEecCCCC
Q 005014 466 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGATNRPD 543 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~atn~~~ 543 (719)
.|.|+.++.++.+|..++...|+||||||||.+...|... ......+++++||..|++... ..+++||+|||+++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999999877532 244677899999999998753 46899999999999
Q ss_pred CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 544 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 622 (719)
Q Consensus 544 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~ 622 (719)
.+|++++| ||+..+++++|+.++|..|++.++++.+.. .+.++..+++.+.||+|+||..+|++|...++++.....
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 999999999999999999999999776543 456789999999999999999999999998887532110
Q ss_pred HHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 005014 623 IERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQ 680 (719)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~ 680 (719)
. ..........|+.+||..|++.++||++.++++.|++|.+.|+.
T Consensus 311 ~-------------~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 311 I-------------ATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355 (357)
T ss_dssp ---------------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSC
T ss_pred h-------------ccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 0 00011234579999999999999999999999999999999975
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=9.5e-37 Score=320.70 Aligned_cols=278 Identities=36% Similarity=0.623 Sum_probs=231.2
Q ss_pred eccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 385 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
...+.+.|++++|++.+++.|.+.+.++..+++.+..++ .++.++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345788999999999999999999999888888877655 4567899999999999999999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCC---CcEEEEEecCC
Q 005014 465 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK---KTVFIIGATNR 541 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~---~~v~vi~atn~ 541 (719)
+.|.|.++..++.+|..++...|+||||||+|.+...+.... .....++.++||..+++.... .+++||+|||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 999999999999999999999999999999999998775431 335678899999999987643 57999999999
Q ss_pred CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q 005014 542 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 620 (719)
Q Consensus 542 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~ 620 (719)
|+.+|++++| ||+..+++++|+.++|..|++.++++.+.. .+.++..+++.+.||+|++|.++|++|+..++++...
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999999876543 4556889999999999999999999999999876422
Q ss_pred HHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhc
Q 005014 621 KDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQS 681 (719)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~~ 681 (719)
.... .........|+.+||..|+..++||+++++++.|++|.+.|+..
T Consensus 247 ~~~~-------------~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 247 EQVK-------------CLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDI 294 (297)
T ss_dssp --------------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC------
T ss_pred hhcc-------------cccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCe
Confidence 1100 00112235799999999999999999999999999999999764
No 28
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=8e-36 Score=330.51 Aligned_cols=266 Identities=41% Similarity=0.742 Sum_probs=231.9
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 467 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 467 (719)
+.++|++++|++++++.+.+.+.+ +..+..+.+++...++|++|+||||||||+||+++|++++.+|+.++++++...|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999988765 5677888999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc
Q 005014 468 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 547 (719)
Q Consensus 468 ~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~ 547 (719)
+|.....++.+|+.++...||++||||||.+...|+...+.......+.++++|.+|++......++++++||+|+.||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999999999999988889999999999998877542222233456789999999999988888999999999999999
Q ss_pred ccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005014 548 ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 627 (719)
Q Consensus 548 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~ 627 (719)
+++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|..+.||+|+||+++|++|+..|.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--------- 255 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--------- 255 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC---------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999998888899999999999999999999999999998876532
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhhcCCC-------CCH--HHHHHHHHHHHHHh
Q 005014 628 RRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS-------VSD--ADIRKYQAFAQTLQ 679 (719)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~s-------v~~--~~~~~~~~~~~~~~ 679 (719)
...|+.+||..|+..+.++ +++ ..+..|++......
T Consensus 256 ----------------~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~ 300 (499)
T 2dhr_A 256 ----------------RRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALA 300 (499)
T ss_dssp ----------------CSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHH
T ss_pred ----------------CCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHH
Confidence 2369999999999876543 232 23556666555543
No 29
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.9e-36 Score=335.18 Aligned_cols=268 Identities=37% Similarity=0.665 Sum_probs=236.0
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 467 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 467 (719)
+.+.|++++|++..++.|.+.+.+++.+++.|..++..++.++|||||||||||++|+++|++++.+|+.++++++.+.|
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc
Q 005014 468 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 547 (719)
Q Consensus 468 ~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~ 547 (719)
.|+++..++.+|+.|....|++|||||||.+.++|... ......+++++||..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 99999999999999999999999999999999887543 234567899999999999988889999999999999999
Q ss_pred ccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005014 548 ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 627 (719)
Q Consensus 548 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~ 627 (719)
+++|+|||+..|+|++|+.++|.+||+.+++..++..++++..++..+.||+|+||.++|++|++.|+++.....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i----- 430 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI----- 430 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTC-----
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccc-----
Confidence 999999999999999999999999999999999988899999999999999999999999999999988753211
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHH
Q 005014 628 RRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDA 666 (719)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~ 666 (719)
..+.............|+++||..|++.++||...+
T Consensus 431 ---~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re 466 (489)
T 3hu3_A 431 ---DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466 (489)
T ss_dssp ---CTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHG
T ss_pred ---cccccccchhhcccCcCCHHHHHHHHHhCCchhhhc
Confidence 000000000011234699999999999988765443
No 30
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=4.4e-35 Score=300.81 Aligned_cols=247 Identities=43% Similarity=0.791 Sum_probs=215.4
Q ss_pred eeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccch
Q 005014 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463 (719)
Q Consensus 384 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l 463 (719)
....|.++|++++|++.++..+.+.+.+ +..+..+.++++..++|++|+||||||||||++++++.++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3456789999999999999999887654 456778899999999999999999999999999999999999999999999
Q ss_pred hhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 005014 464 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 543 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~ 543 (719)
...+.+...+.++.+|+.++...|+++|+||+|.+...++...+.......+.+++++.+|++......++++++||+|+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 88888888889999999998888999999999999877653211223345678899999999998888899999999999
Q ss_pred CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 544 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 623 (719)
Q Consensus 544 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~ 623 (719)
.+|++++|||||+..+++++|+.++|.+||+.++++.++..++++..++..+.||+|+||+++|++|+..|.++.
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~----- 240 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG----- 240 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999988888889999999999999999999999999998887542
Q ss_pred HHHhhhcCCCcccccccccccccccHHHHHHHH
Q 005014 624 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESM 656 (719)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~ 656 (719)
...|+.+||++|+
T Consensus 241 --------------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 --------------------RRKITMKDLEEAA 253 (254)
T ss_dssp --------------------CSSBCHHHHHHHT
T ss_pred --------------------CCCcCHHHHHHHh
Confidence 2369999999886
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=5.9e-35 Score=318.62 Aligned_cols=279 Identities=35% Similarity=0.615 Sum_probs=227.7
Q ss_pred eeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccc
Q 005014 383 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 462 (719)
Q Consensus 383 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~ 462 (719)
.....+.+.|++++|++.+++.|.+.+.++..+++.+..++ .+++++|||||||||||++|+++|.+++.+|+.+++++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 34455778999999999999999999998888888877766 45678999999999999999999999999999999999
Q ss_pred hhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCC--CCcEEEEEecC
Q 005014 463 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGATN 540 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~atn 540 (719)
+.+.|+|+++..++.+|..++...|+||||||||.++..+... ......+++++|+..|+++.. ..+++||+|||
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999998876532 234578999999999998764 46799999999
Q ss_pred CCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q 005014 541 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 619 (719)
Q Consensus 541 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~ 619 (719)
+++.||++++| ||+..++|++|+.++|..||+.++.+.... .+.++..+++.+.||++++|..+|+.|...++++..
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred CchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999999999999999775543 345788999999999999999999999998887631
Q ss_pred HHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 005014 620 EKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQ 680 (719)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~ 680 (719)
... ...........|+.+||..+++.++++++.+.++.|++|.++|+.
T Consensus 339 ~~~-------------~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 339 PEQ-------------VKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp CC----------------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred hhh-------------hhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 110 001111234579999999999999999999999999999999875
No 32
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=301.25 Aligned_cols=262 Identities=40% Similarity=0.708 Sum_probs=213.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
.++++|+||||++++++.|++.+.+|+.+++.++++++..++|++|+||||||||||++++|+.++..++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHh
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 273 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al 273 (719)
+.++.+..++.+|+.+....|+++|+||++.++..+.........++..+++..|++...+..++++++||.|+.+|+++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 88888899999999998889999999999998765432222222456788899999888888899999999999999999
Q ss_pred hccCCCceEEEeCCCChHHHHHHHHHHhcC---CCCCCcccHHHHHHHh--CCCccccHHHHHHHHHHHHHHhhcccccc
Q 005014 274 RRFGRFDREIDIGVPDEVGRLEVLRIHTKN---MKLSDDVDLERIAKDT--HGYVGADLAALCTEAALQCIREKMDVIDL 348 (719)
Q Consensus 274 ~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~---~~l~~~~~l~~la~~t--~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 348 (719)
+|+|||++.|+++.|+.++|.+||+.++++ .++..++++..++..+ +||+|+||..+|++|++.++++.......
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~ 243 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999998853 4556788899999874 59999999999999999988765321110
Q ss_pred ccchhhHhHhhccccchHHHHHhhccCCCCccc
Q 005014 349 EDETIDAEILNSMAVTDEHFKTALGTSNPSALR 381 (719)
Q Consensus 349 ~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~ 381 (719)
........++.+||..|+..+.|+...
T Consensus 244 ------~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 244 ------GNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp ------------CCBCHHHHHHHHTTCCCCC--
T ss_pred ------cccccCCeecHHHHHHHHHHhcCCCCh
Confidence 011124578999999999999987543
No 33
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=3e-34 Score=339.69 Aligned_cols=435 Identities=22% Similarity=0.329 Sum_probs=298.9
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEe
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 186 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v~ 186 (719)
-.++++.|.++.++++.+.+.. ..+.++||+||||||||+++++++..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 3678899999999888777643 245689999999999999999999987 56677777
Q ss_pred chhhh--hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecC
Q 005014 187 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 264 (719)
Q Consensus 187 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn 264 (719)
...+. ..+.|..+..++.+|+.+....+++|||||++.+.+......+.. ...+.+..+..+..+.+|++|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~------~~~~~L~~~l~~~~~~~I~at~ 323 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV------DAANLIKPLLSSGKIRVIGSTT 323 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH------HHHHHHSSCSSSCCCEEEEEEC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchH------HHHHHHHHHHhCCCeEEEEEeC
Confidence 76665 357788899999999999887889999999999987654322221 1223444444566788888888
Q ss_pred CCC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC------CCCCCcccHHHHHHHhCCCcc-----ccHH
Q 005014 265 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN------MKLSDDVDLERIAKDTHGYVG-----ADLA 328 (719)
Q Consensus 265 ~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~------~~l~~~~~l~~la~~t~g~~~-----~dl~ 328 (719)
.++ .+|+++.+ ||. .+.++.|+.+++.+|++.+... ..+. +..+..++..+.+|.. ..+.
T Consensus 324 ~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp HHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred chHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhcccccCchHHH
Confidence 642 56788987 886 6999999999999999866532 2222 2345666666666533 3456
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccCCCcccc--------------
Q 005014 329 ALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWED-------------- 394 (719)
Q Consensus 329 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~-------------- 394 (719)
.++.+++......... .....++.+++..++..... ...+.+.|++
T Consensus 400 ~lld~a~~~~~~~~~~-------------~~~~~v~~~di~~~~~~~~~-------ip~~~~~~~~~~~l~~l~~~l~~~ 459 (758)
T 1r6b_X 400 DVIDEAGARARLMPVS-------------KRKKTVNVADIESVVARIAR-------IPEKSVSQSDRDTLKNLGDRLKML 459 (758)
T ss_dssp HHHHHHHHHHHHSSSC-------------CCCCSCCHHHHHHHHHHHSC-------CCCCCSSSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhccccc-------------ccCCccCHHHHHHHHHHhcC-------CCccccchhHHHHHHHHHHHHHhh
Confidence 6666664322110000 01234667777776654321 1112334444
Q ss_pred ccccHHHHHHhhhccccCCCChhhhhhhcCC----CCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhh----
Q 005014 395 IGGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM---- 466 (719)
Q Consensus 395 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~---- 466 (719)
+.|++.+++.+...+.. ...|+. +..++||+||||||||++|+++|..++.+|+.++++++..+
T Consensus 460 v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp SCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCS
T ss_pred ccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHh
Confidence 44555555444433321 112332 33469999999999999999999999999999999987643
Q ss_pred --------ccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC---------C
Q 005014 467 --------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------A 529 (719)
Q Consensus 467 --------~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~ 529 (719)
|+|..+. +.+....+...++|+|||||+.+. ..+++.|++.|+... +
T Consensus 532 ~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~~~~Ll~~le~~~~~~~~g~~~~ 595 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNILLQVMDNGTLTDNNGRKAD 595 (758)
T ss_dssp SSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred hhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC--------------HHHHHHHHHHhcCcEEEcCCCCEEe
Confidence 3332222 234555566778999999999862 468899999988531 1
Q ss_pred CCcEEEEEecCCCC-------------------------CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccC----
Q 005014 530 KKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS---- 580 (719)
Q Consensus 530 ~~~v~vi~atn~~~-------------------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~---- 580 (719)
..+++||+|||.+. .++|+|++ ||+.+|.|++|+.+++..|++.++++.
T Consensus 596 ~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 596 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp CTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 24688999999854 67889998 999999999999999999999988632
Q ss_pred ---CCCCccC---HHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q 005014 581 ---PVSKDVD---LRALAKYT--QGFSGADITEICQRACKYAIRENIE 620 (719)
Q Consensus 581 ---~~~~~~d---~~~la~~~--~~~sg~di~~~~~~A~~~a~~~~~~ 620 (719)
.+...++ ++.|++.. .+++.++++++++.+...++.+.+-
T Consensus 674 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l 721 (758)
T 1r6b_X 674 DQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_dssp HHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred HHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 1111222 45566543 3466899999999998887776543
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=301.52 Aligned_cols=248 Identities=40% Similarity=0.735 Sum_probs=198.7
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 467 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 467 (719)
|+++|++++|++.+++.|.+.+.+ +.+++.+..++...++++||+||||||||++|+++|++++.+++.++++++.+.|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999988776 6677788888999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCC-CCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 005014 468 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD-AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 546 (719)
Q Consensus 468 ~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld 546 (719)
.|.++..++.+|+.++...|+||||||+|.+..+|+..... ......+.++.++.++++.....+++||+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 99999999999999999999999999999998876432111 12234567899999999988778999999999999999
Q ss_pred cccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccC--HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 547 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD--LRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 624 (719)
Q Consensus 547 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d--~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~ 624 (719)
++++|||||+..++|++|+.++|.+||+.++++.++..+.+ +..+++.+.||+|++|.++|++|+..|.++.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~------ 233 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG------ 233 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----------
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999998887665444 4789999999999999999999999887653
Q ss_pred HHhhhcCCCcccccccccccccccHHHHHHHHhhcCC
Q 005014 625 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 661 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~ 661 (719)
...|+.+||..|+..+.+
T Consensus 234 -------------------~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 234 -------------------HTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp ----------------------CCBCCHHHHHHHHHH
T ss_pred -------------------CCCCCHHHHHHHHHHhcc
Confidence 236889999999987644
No 35
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3.2e-33 Score=330.26 Aligned_cols=442 Identities=20% Similarity=0.290 Sum_probs=280.9
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 185 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v 185 (719)
.-.++++.|.++.++++.+.+.. ....++||+||||||||++|+++|..+ +..++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 34678899999999998887654 234579999999999999999999997 7777777
Q ss_pred echhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCC
Q 005014 186 NGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 265 (719)
Q Consensus 186 ~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~ 265 (719)
++ ..++.|+.+..++.+|+.+....+++|||| . . ....+.|+ ....+..+.+|++||.
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~-----~-----~~~~~~L~----~~l~~~~v~~I~at~~ 300 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-----A-----IDASNILK----PSLARGELQCIGATTL 300 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------C----CCTTSSSCEEEEECCT
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C-----c-----hhHHHHHH----HHHhcCCEEEEeCCCh
Confidence 76 456778888899999999999899999999 0 0 00112222 2233567889999998
Q ss_pred CC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-----CcccHHHHHHHhCCC-----ccccHHHH
Q 005014 266 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGY-----VGADLAAL 330 (719)
Q Consensus 266 ~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-----~~~~l~~la~~t~g~-----~~~dl~~l 330 (719)
.. .+++++++ || ..+.++.|+.+++.+||+.+...+... .+..+..++..+++| .+.....+
T Consensus 301 ~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~l 377 (758)
T 3pxi_A 301 DEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (758)
T ss_dssp TTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHH
Confidence 87 78999999 99 569999999999999999766553221 223355555555444 44555666
Q ss_pred HHHHHHHHHHhhcc-cccccc--ch----------------------------------------hhHh-HhhccccchH
Q 005014 331 CTEAALQCIREKMD-VIDLED--ET----------------------------------------IDAE-ILNSMAVTDE 366 (719)
Q Consensus 331 ~~~a~~~~~~~~~~-~~~~~~--~~----------------------------------------~~~~-~~~~~~v~~~ 366 (719)
+.+++..+...... ...+.. .. +... ......++.+
T Consensus 378 l~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 457 (758)
T 3pxi_A 378 IDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVD 457 (758)
T ss_dssp HHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTH
T ss_pred HHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHH
Confidence 66654432211100 000000 00 0000 0011234444
Q ss_pred HHHHhhccCCCCcccc-------eeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCc
Q 005014 367 HFKTALGTSNPSALRE-------TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 439 (719)
Q Consensus 367 ~~~~al~~~~ps~~~~-------~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtG 439 (719)
++...+.......... ........-.+.+.|++.+++.+...+....... .....+..++||+||||||
T Consensus 458 ~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~----~~~~~p~~~~Ll~Gp~GtG 533 (758)
T 3pxi_A 458 DIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGL----KDPKRPIGSFIFLGPTGVG 533 (758)
T ss_dssp HHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTC----SCTTSCSEEEEEESCTTSS
T ss_pred HHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHccc----CCCCCCceEEEEECCCCCC
Confidence 4444443322100000 0000011113457788888877776654311100 0011222359999999999
Q ss_pred hhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHH
Q 005014 440 KTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRV 516 (719)
Q Consensus 440 KT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~ 516 (719)
||++|+++|..+ +.+|+.++++++...+... ...++...+...++|||||||+.+. ..+
T Consensus 534 KT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~ 595 (758)
T 3pxi_A 534 KTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH--------------PDV 595 (758)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC--------------HHH
T ss_pred HHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC--------------HHH
Confidence 999999999997 6789999999998776554 3334455566777899999999862 467
Q ss_pred HHHHHHHhcCCC---------CCCcEEEEEecCCCCC------------CCcccCCCCCcceEEEeCCCCHHHHHHHHHH
Q 005014 517 LNQLLTEMDGMS---------AKKTVFIIGATNRPDI------------IDPALLRPGRLDQLIYIPLPDEESRLQIFKA 575 (719)
Q Consensus 517 ~~~ll~~ld~~~---------~~~~v~vi~atn~~~~------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 575 (719)
.+.|++.|+... ...+++||+|||.+.. +.|+|++ ||+.+|.|++|+.+++..|++.
T Consensus 596 ~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 596 FNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp HHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHH
T ss_pred HHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHH
Confidence 888888888632 2346899999997654 7888887 9999999999999999999998
Q ss_pred HhccC-------CCCCccC---HHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHH
Q 005014 576 CLRKS-------PVSKDVD---LRALAKYT--QGFSGADITEICQRACKYAIRENI 619 (719)
Q Consensus 576 ~~~~~-------~~~~~~d---~~~la~~~--~~~sg~di~~~~~~A~~~a~~~~~ 619 (719)
++.+. .....++ ++.|++.. ..++.++|+++++++...++.+.+
T Consensus 674 ~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 674 MSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp HHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 87542 2222233 44555432 345679999999999888877664
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=296.20 Aligned_cols=262 Identities=34% Similarity=0.618 Sum_probs=225.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh-CCeEEEEechhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFFFCINGPEIMS 192 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l-~~~~i~v~~~~l~~ 192 (719)
.++++|+||+|++++++.|++.+.+|+++|++|.. +..+++++||+||||||||++|+++|+++ +..++.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 46789999999999999999999999999999875 35678999999999999999999999999 88999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-CCcEEEEEecCCCCCCCH
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDP 271 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~-~~~vivI~atn~~~~ld~ 271 (719)
.+.|+.+..++.+|+.+....|++|||||+|.+.+.+.........++..+++..++++.. ..+++||++||.++.+++
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCH
Confidence 9999999999999999999999999999999999887666566678889999999998753 578999999999999999
Q ss_pred HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc-
Q 005014 272 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE- 349 (719)
Q Consensus 272 al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~- 349 (719)
+++| ||+..++++.|+.++|.+|++.+++..... .+.++..+++.++||+++|+..+|++|++.++++........
T Consensus 165 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 165 AIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred HHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999 999999999999999999999998877653 567899999999999999999999999998887754211000
Q ss_pred -------------------------------cchhhHhHhhccccchHHHHHhhccCCCC
Q 005014 350 -------------------------------DETIDAEILNSMAVTDEHFKTALGTSNPS 378 (719)
Q Consensus 350 -------------------------------~~~~~~~~~~~~~v~~~~~~~al~~~~ps 378 (719)
...+..+......++.+||..|+..++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps 302 (322)
T 1xwi_A 243 VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPT 302 (322)
T ss_dssp EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCS
T ss_pred hccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCC
Confidence 00011111123468999999999998776
No 37
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.8e-33 Score=292.70 Aligned_cols=245 Identities=44% Similarity=0.795 Sum_probs=214.1
Q ss_pred ccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 386 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
..|.++|++++|++.+++.+.+.+.+ +..+..+..+++..++|++|+||||||||||++++++.++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34789999999999999999887654 45677888999999999999999999999999999999999999999999988
Q ss_pred hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 005014 466 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 545 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l 545 (719)
.+.+...+.++.+|+.+....|+++|+||+|.+...++...........+.+++++.+|++......++++++||+|+.|
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 88888888999999999988899999999999987664321112234567889999999998887889999999999999
Q ss_pred CcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 546 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 625 (719)
Q Consensus 546 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~ 625 (719)
|++++|||||+..++|++|+.++|.+||+.++++.++..++++..++..+.||+|+||+++|++|+..|.++.
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~------- 264 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------- 264 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999999999999999988888888999999999999999999999999998876542
Q ss_pred HhhhcCCCcccccccccccccccHHHHHHHH
Q 005014 626 ERRRSENPEAMEEDVEDEVAEIKAVHFEESM 656 (719)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~ 656 (719)
...|+.+||++|+
T Consensus 265 ------------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 ------------------RRKITMKDLEEAA 277 (278)
T ss_dssp ------------------CCSBCHHHHHHHT
T ss_pred ------------------CCCcCHHHHHHHh
Confidence 2369999999886
No 38
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.3e-33 Score=293.90 Aligned_cols=266 Identities=41% Similarity=0.730 Sum_probs=225.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..+.++|++|+|+++++++|++.+.+|+.+|+.|.++++.++.++||+||||||||++|+++|+.++..++.++++++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~l 269 (719)
.+.|..+..++.+|+.+....|++|||||+|.+...++.. .+....+++.+|+..++++....+++||++||.++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 9999999999999999999999999999999988654321 1123346778899999988777889999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
+++++|++||+..++++.|+.++|.+|++.+++...+..+.++..++..++||+|+||..+|++|.+.++++........
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999888877788899999999999999999999999988876643211000
Q ss_pred cch-------hhH-hHhhccccchHHHHHhhccCCCC
Q 005014 350 DET-------IDA-EILNSMAVTDEHFKTALGTSNPS 378 (719)
Q Consensus 350 ~~~-------~~~-~~~~~~~v~~~~~~~al~~~~ps 378 (719)
... ... .......++.+||..|+..+.|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTCCCS
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 000 000 00112468899999999988765
No 39
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=3e-35 Score=304.46 Aligned_cols=255 Identities=38% Similarity=0.710 Sum_probs=218.3
Q ss_pred ccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 386 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
+.+.+.|++++|++.+++.|.+.+.+ +.+++.+..++...++++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 35678999999999999999988775 77888999999999999999999999999999999999999999999999999
Q ss_pred hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCC-CCCCCchHHHHHHHHHHhcCCCC-CCcEEEEEecCCCC
Q 005014 466 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSV-GDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNRPD 543 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~atn~~~ 543 (719)
.|.|.++..++.+|+.+....|+||||||+|.+...|.... ........+++++||..|++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 99999998999999999999999999999999987763211 01112234567888999988754 34599999999999
Q ss_pred CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 544 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 623 (719)
Q Consensus 544 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~ 623 (719)
.+|++++|+|||+..++|++|+.++|..||+.++++.++..++++..+++.+.||+|+||.++|++|+..|..+.
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~----- 237 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN----- 237 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-----
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999998888888899999999999999999999999988775421
Q ss_pred HHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHH
Q 005014 624 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDA 666 (719)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~ 666 (719)
...|+.+||..|+..+.++...+
T Consensus 238 --------------------~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 238 --------------------QKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp --------------------CCSCCHHHHHTSCTTCCCCCC--
T ss_pred --------------------cCCcCHHHHHHHHHHHhhcchhh
Confidence 23699999999999988877654
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=5.1e-32 Score=287.73 Aligned_cols=265 Identities=37% Similarity=0.636 Sum_probs=222.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++++|++|+|++++++.|++.+.+|+.+|+++.. +..++.++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 356789999999999999999999999999998876 4577889999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-CCCcEEEEEecCCCCCCCH
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDP 271 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-~~~~vivI~atn~~~~ld~ 271 (719)
.+.|..+..++.+|+.+....|++|||||+|.+...+.........++..+++..+++.. ....++||++||.++.+++
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~ 169 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 169 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCH
Confidence 999999999999999999999999999999999987655444455778889999998874 4568999999999999999
Q ss_pred HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccccc
Q 005014 272 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350 (719)
Q Consensus 272 al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 350 (719)
++++ ||+..++++.|+.++|.+|++.+++..... .+.++..++..++||+++|+..+|++|.+.++++.........
T Consensus 170 al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~ 247 (322)
T 3eie_A 170 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 247 (322)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEE
T ss_pred HHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999 999999999999999999999998876643 5678999999999999999999999999988887543321100
Q ss_pred --------------------------chhhHhHhhccccchHHHHHhhccCCCCcc
Q 005014 351 --------------------------ETIDAEILNSMAVTDEHFKTALGTSNPSAL 380 (719)
Q Consensus 351 --------------------------~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 380 (719)
..+..+......++.+||..|+..++|+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 303 (322)
T 3eie_A 248 VSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303 (322)
T ss_dssp CC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSC
T ss_pred hccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCC
Confidence 000111112356899999999999888754
No 41
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=6.1e-32 Score=322.71 Aligned_cols=455 Identities=24% Similarity=0.346 Sum_probs=278.4
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 185 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v 185 (719)
+-.++++.|.++.++++.+.+.. ..+.+++|+||||||||++++++|..+ +..++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 44688899999998888877643 234579999999999999999999987 7889999
Q ss_pred echhhh--hhcccchHHHHHHHHHHHHhc-CCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEe
Q 005014 186 NGPEIM--SKLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 262 (719)
Q Consensus 186 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~-~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~a 262 (719)
++..+. ..+.|+.+..++.+|+.+... .|++|||||++.+.+....... ..+.+.|...+. +..+.+|++
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l~----~~~i~~I~a 305 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPALA----RGELRLIGA 305 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHHh----CCCeEEEEe
Confidence 998886 467788889999999998875 6899999999999865432211 112233333333 356778888
Q ss_pred cCCCC----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC------CCCCCcccHHHHHHHhCCC-----ccccH
Q 005014 263 TNRPN----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN------MKLSDDVDLERIAKDTHGY-----VGADL 327 (719)
Q Consensus 263 tn~~~----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~------~~l~~~~~l~~la~~t~g~-----~~~dl 327 (719)
|+.++ .+++++.+ ||.. +.++.|+.+++.+||+.+... ..+. +..+..++..+++| .+...
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcccccChHHH
Confidence 88664 46899988 8975 999999999999999865542 2222 23356666665544 33444
Q ss_pred HHHHHHHHHHHHHhhc-------------c-------cccccc-------------c-------------hhhHhH----
Q 005014 328 AALCTEAALQCIREKM-------------D-------VIDLED-------------E-------------TIDAEI---- 357 (719)
Q Consensus 328 ~~l~~~a~~~~~~~~~-------------~-------~~~~~~-------------~-------------~~~~~~---- 357 (719)
..++.+++........ . ....+. + .+..+.
T Consensus 382 i~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (854)
T 1qvr_A 382 IDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILR 461 (854)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554332211100 0 000000 0 000000
Q ss_pred ------------------------------------------------------hhccccchHHHHHhhccCCCC---cc
Q 005014 358 ------------------------------------------------------LNSMAVTDEHFKTALGTSNPS---AL 380 (719)
Q Consensus 358 ------------------------------------------------------~~~~~v~~~~~~~al~~~~ps---~~ 380 (719)
.-...+..+++...+...... .+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~ 541 (854)
T 1qvr_A 462 KLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKL 541 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHhh
Confidence 001112223333322221100 00
Q ss_pred ----cceeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcC----CCCcceeeecCCCCchhHHHHHHHHHh-
Q 005014 381 ----RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANEC- 451 (719)
Q Consensus 381 ----~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gill~GppGtGKT~la~~la~~~- 451 (719)
.......+..-++.+.|.+..++.+...+... ..|+ .+..++||+||||||||++|++++..+
T Consensus 542 ~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 542 LEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp TCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 00000011112456777777777776655321 1121 223469999999999999999999998
Q ss_pred --CCeEEEEeccchhhh------------ccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHH
Q 005014 452 --QANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 517 (719)
Q Consensus 452 --~~~~i~v~~~~l~~~------------~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~ 517 (719)
+.+|+.++++++... |+|..+ .+.+....+...++|||||||+.+. ..+.
T Consensus 614 ~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~--------------~~~~ 677 (854)
T 1qvr_A 614 DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH--------------PDVF 677 (854)
T ss_dssp SSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC--------------HHHH
T ss_pred CCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC--------------HHHH
Confidence 789999999877543 333322 1334455556667999999998862 4688
Q ss_pred HHHHHHhcCCC---------CCCcEEEEEecCCC--------------------------CCCCcccCCCCCcceEEEeC
Q 005014 518 NQLLTEMDGMS---------AKKTVFIIGATNRP--------------------------DIIDPALLRPGRLDQLIYIP 562 (719)
Q Consensus 518 ~~ll~~ld~~~---------~~~~v~vi~atn~~--------------------------~~ld~allrpgRf~~~i~~~ 562 (719)
+.|++.|+... +..+++||+|||.. ..+.|+|+. ||+.++.|+
T Consensus 678 ~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~ 755 (854)
T 1qvr_A 678 NILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFR 755 (854)
T ss_dssp HHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCC
T ss_pred HHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCC
Confidence 99999998542 22478999999972 346777877 999999999
Q ss_pred CCCHHHHHHHHHHHhccC-------CCCCccC---HHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHH
Q 005014 563 LPDEESRLQIFKACLRKS-------PVSKDVD---LRALAKYTQ--GFSGADITEICQRACKYAIRENIE 620 (719)
Q Consensus 563 ~p~~~~r~~Il~~~~~~~-------~~~~~~d---~~~la~~~~--~~sg~di~~~~~~A~~~a~~~~~~ 620 (719)
+|+.+++..|++.++++. .....++ ++.|++... .++.++|+++|+.+...++.+.+.
T Consensus 756 pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 756 PLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888631 1111233 455666554 567899999999999988877654
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.98 E-value=1.5e-31 Score=287.34 Aligned_cols=263 Identities=37% Similarity=0.632 Sum_probs=216.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
.+.++|++|+|++.+++.|++.+.+|+.+|++|.. +..++.++||+||||||||++|+++|++++.+++.+++.++.+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45789999999999999999999999999999886 56778899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-CCcEEEEEecCCCCCCCHH
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPA 272 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~-~~~vivI~atn~~~~ld~a 272 (719)
+.|..+..++.+|..+....|++|||||+|.+.+.+........+++..+|+..++++.. ...++||++||.++.++++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~a 203 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHH
Confidence 999999999999999999999999999999999876555555667888999999998754 4679999999999999999
Q ss_pred hhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc--
Q 005014 273 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE-- 349 (719)
Q Consensus 273 l~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~-- 349 (719)
+++ ||+..+.++.|+.++|.+||+.+++..... .+.++..++..++||+++||..+|++|++.++++........
T Consensus 204 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 281 (355)
T 2qp9_X 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 281 (355)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999 999999999999999999999998877643 567899999999999999999999999999887743211000
Q ss_pred ------------------------cchhhHhHhhccccchHHHHHhhccCCCCc
Q 005014 350 ------------------------DETIDAEILNSMAVTDEHFKTALGTSNPSA 379 (719)
Q Consensus 350 ------------------------~~~~~~~~~~~~~v~~~~~~~al~~~~ps~ 379 (719)
...+..+......++.+||..|+..++|+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 282 STEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp CC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred ccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 000111112235689999999999998774
No 43
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=3.3e-30 Score=283.92 Aligned_cols=245 Identities=44% Similarity=0.747 Sum_probs=214.8
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhc
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 194 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~ 194 (719)
+.++|+||+|++++++++++++.. +.+|..+.++++..++++||+||||||||++++++|++++.+|+.++++++...+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 567899999999999999999876 7788999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCH
Q 005014 195 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 271 (719)
Q Consensus 195 ~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~ 271 (719)
.|....+++.+|+.+....|++|||||+|.+..+++.. ......+++.+|+..|+++.....++||++||.++.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99888999999999999999999999999998876432 122345678889999998777778999999999999999
Q ss_pred HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccc
Q 005014 272 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 351 (719)
Q Consensus 272 al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 351 (719)
+++|++||++.+.++.|+.++|.+|++.++++.++..++++..++..++||+++||..+|.+|+..+.++..
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~-------- 241 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR-------- 241 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC--------
Confidence 999999999999999999999999999999988888888899999999999999999999999887765321
Q ss_pred hhhHhHhhccccchHHHHHhhccCCC
Q 005014 352 TIDAEILNSMAVTDEHFKTALGTSNP 377 (719)
Q Consensus 352 ~~~~~~~~~~~v~~~~~~~al~~~~p 377 (719)
..++.+++..++..+.+
T Consensus 242 ---------~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 242 ---------DKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ---------SSBCHHHHHHHHHHHC-
T ss_pred ---------CeecHHHHHHHHHHHhc
Confidence 24677888888776543
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=1.5e-30 Score=287.74 Aligned_cols=228 Identities=38% Similarity=0.684 Sum_probs=196.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh-CCeEEEEechhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFFFCINGPEIM 191 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l-~~~~i~v~~~~l~ 191 (719)
..++++|++|+|++.+++.|.+.+.+|+++|++|.. +..+++++||+||||||||++|+++|.++ +.+++.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 356789999999999999999999999999998874 35677899999999999999999999999 8899999999999
Q ss_pred hhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-CCcEEEEEecCCCCCCC
Q 005014 192 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSID 270 (719)
Q Consensus 192 ~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~-~~~vivI~atn~~~~ld 270 (719)
+.+.|..+..++.+|+.+....|+||||||+|.+.+.+.........++..+|+..++++.. ..+++||++||.++.++
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 99999888899999999999999999999999998877655555667888999999988753 56899999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCC-CCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhc
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 343 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 343 (719)
++++| ||+..+.++.|+.++|..|++.++..... ..+.++..++..++||+++||..+|++|.+.++++..
T Consensus 286 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 286 SAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999877654 3567899999999999999999999999998888753
No 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2.3e-29 Score=262.72 Aligned_cols=245 Identities=54% Similarity=0.891 Sum_probs=216.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
.++++|++++|+++++++|.+.+..++.+++.+..+++.++.++||+||||||||++|+++|+.++.+++.+++.++...
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCC
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 270 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld 270 (719)
+.+.....++.+|..+....|++|||||+|.+.+++.... .....+.+..++..+++.....++++|++||.++.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 9999999999999999999999999999999987664332 2223445566677777777777899999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccccc
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 350 (719)
+++++++||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.||+++++..+|.+|...++.+..
T Consensus 171 ~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~------- 243 (285)
T 3h4m_A 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR------- 243 (285)
T ss_dssp HHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-------
Confidence 9999999999999999999999999999999888888888899999999999999999999999888776542
Q ss_pred chhhHhHhhccccchHHHHHhhccC
Q 005014 351 ETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
..++.+++..++..+
T Consensus 244 ----------~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 244 ----------DYVTMDDFRKAVEKI 258 (285)
T ss_dssp ----------SSBCHHHHHHHHHHH
T ss_pred ----------CcCCHHHHHHHHHHH
Confidence 236677777776654
No 46
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=5.5e-30 Score=302.03 Aligned_cols=265 Identities=37% Similarity=0.682 Sum_probs=231.9
Q ss_pred cCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhh
Q 005014 387 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 466 (719)
Q Consensus 387 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 466 (719)
.+.+.|++|+|++..++.|.+.+.+++.+++.+..+++.++.++||+||||||||+||+++|++++.+++.++++++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 005014 467 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 546 (719)
Q Consensus 467 ~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld 546 (719)
|.|+.+..++.+|+.+....|+++|+||+|.++.+++.. ......+++++|+..|++......+++|+|||+++.+|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 999999999999999999999999999999999887543 23456789999999999998888999999999999999
Q ss_pred cccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005014 547 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 626 (719)
Q Consensus 547 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~ 626 (719)
+++.|+|||+..++++.|+.++|.+||+.++++..+..+.++..++..+.||+++++..+|++|+..++++.........
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99999999999999999999999999999999999989999999999999999999999999999988876432100000
Q ss_pred hhhcCCCcccccccccccccccHHHHHHHHhhcCCC
Q 005014 627 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS 662 (719)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~s 662 (719)
... .........++.+||..++....++
T Consensus 435 -------~~~-~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 435 -------ETI-DAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp -------HHC-CHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred -------hcc-chhhhhhhhhhhhhhhccccccCch
Confidence 000 0001123457888999998877664
No 47
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=7.2e-29 Score=254.90 Aligned_cols=244 Identities=42% Similarity=0.701 Sum_probs=208.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
.+..+|++++|++++++++.+++.. +.+++.+..++...+.+++|+||||||||++++++++.++.+++.+++.++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 3567899999999999999998876 788888888888999999999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCC
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 270 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld 270 (719)
+.+.....++.+|+.+....|+++||||+|.+...++.. ......+.+.+++..++++.....++||++||.++.++
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 888888999999999998889999999999998765432 12233467788888898887778899999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccccc
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 350 (719)
+++.+++||++.+.++.|+.++|.+|++.+.++.++..+.++..++..++||+++++..+|.+|...+..+..
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~------- 237 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK------- 237 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-------
Confidence 9999999999999999999999999999999888888888899999999999999999999999887765431
Q ss_pred chhhHhHhhccccchHHHHHhhccC
Q 005014 351 ETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
..++.+++..++..+
T Consensus 238 ----------~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 238 ----------RVVSMVEFEKAKDKI 252 (257)
T ss_dssp ----------SSBCHHHHHHHHHHH
T ss_pred ----------CcccHHHHHHHHHHH
Confidence 346778888777543
No 48
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=5e-29 Score=276.10 Aligned_cols=246 Identities=41% Similarity=0.697 Sum_probs=214.9
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhc
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 194 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~ 194 (719)
+.++|+||+|+++++..+++++.. +.++..+.++++..+++++|+||||||||+|++++|+.++..++.+++.++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 567899999999999999998876 7788889999999999999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCH
Q 005014 195 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 271 (719)
Q Consensus 195 ~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~ 271 (719)
.+.....++.+|+.+....|+++||||||.+...++.. ......+.+.+++..|++......++++++||.|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 88888899999999888889999999999998765421 123335677888899998877778999999999999999
Q ss_pred HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccc
Q 005014 272 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 351 (719)
Q Consensus 272 al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 351 (719)
+++|++||++.+.++.|+.++|.+||+.++++..+..++++..++..++||+++||..+|.+|+..+.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--------- 255 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--------- 255 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC---------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999888888888889999999999999999999999987665322
Q ss_pred hhhHhHhhccccchHHHHHhhccCCCC
Q 005014 352 TIDAEILNSMAVTDEHFKTALGTSNPS 378 (719)
Q Consensus 352 ~~~~~~~~~~~v~~~~~~~al~~~~ps 378 (719)
...++.+|+..++..+.+.
T Consensus 256 --------~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 256 --------RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp --------CSSCCSHHHHHHHHHHTTC
T ss_pred --------CCccCHHHHHHHHHHHhcc
Confidence 1347778888888766544
No 49
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=7.7e-28 Score=246.77 Aligned_cols=227 Identities=44% Similarity=0.757 Sum_probs=197.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
.+.++|++++|+++.+.+++++... +.++..+..+++..+++++|+||||||||||++++++.++..++.+++.++...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 4678999999999999999888765 677888999999999999999999999999999999999999999999998887
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCC
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 270 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld 270 (719)
+.+.....++.+|+.+....|+++|+||+|.+...+... ......+.+.+++..+++......++++++||.|+.+|
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld 168 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 168 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCC
Confidence 778778889999999987889999999999887654321 12233566778888888877777889999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHh
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 341 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 341 (719)
++++|++||+..+.++.|+.++|.+||+.+.+...+..+.++..++..++||+++|+..+|.+|+..+.++
T Consensus 169 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988888888888999999999999999999999998876653
No 50
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=8.2e-28 Score=247.52 Aligned_cols=225 Identities=42% Similarity=0.708 Sum_probs=179.4
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 195 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~ 195 (719)
+++|++++|+++.++.|++++.. +.+|+.+..+|+..+.++||+||||||||++|+++|++++.+++.+++.++...+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 57899999999999999999886 78888888999999999999999999999999999999999999999999988888
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc----hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCH
Q 005014 196 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH----GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 271 (719)
Q Consensus 196 g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~----~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~ 271 (719)
+.....++.+|+.+....|++|||||+|.+...+.... .......+.+++..+++.....++++|++||.++.+++
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88888999999999988999999999999986653221 11223456677777777766678999999999999999
Q ss_pred HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcc--cHHHHHHHhCCCccccHHHHHHHHHHHHHHh
Q 005014 272 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDV--DLERIAKDTHGYVGADLAALCTEAALQCIRE 341 (719)
Q Consensus 272 al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~--~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 341 (719)
++++++||+..+.++.|+.++|.+|++.+++...+.... ....++..+.||+++++..++.+|+..+.++
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~ 232 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999888766554433 3478999999999999999999988776543
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=8.6e-28 Score=252.30 Aligned_cols=260 Identities=38% Similarity=0.586 Sum_probs=210.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..++.+|++++|.+++++.|++.+..|+.+|+++..++ .++.++||+||||||||++|+++|+.++.+++.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 34577999999999999999999999999999887665 46789999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCC---CcEEEEEecCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR---AHVIVIGATNRPNSI 269 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~---~~vivI~atn~~~~l 269 (719)
.+.+.....++.+|..+....|++|||||+|.+...+.....+...++..+|+..+++.... ..++||++||.++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 89998899999999999999999999999999987765433333456677788888876543 569999999999999
Q ss_pred CHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCC-CCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccc
Q 005014 270 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 348 (719)
Q Consensus 270 d~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 348 (719)
++++++ ||+..+.++.|+.++|..|++.++..... ..+..+..++..+.||+++++..+|++++..++++.......
T Consensus 173 ~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~ 250 (297)
T 3b9p_A 173 DEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK 250 (297)
T ss_dssp CHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-----
T ss_pred CHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999998 99999999999999999999988765443 244568899999999999999999999988887654221100
Q ss_pred ccchhhHhHhhccccchHHHHHhhccCCCCcc
Q 005014 349 EDETIDAEILNSMAVTDEHFKTALGTSNPSAL 380 (719)
Q Consensus 349 ~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 380 (719)
.. .......++.+||..|+..+.|+..
T Consensus 251 ---~~--~~~~~~~i~~~d~~~a~~~~~~s~~ 277 (297)
T 3b9p_A 251 ---CL--DISAMRAITEQDFHSSLKRIRRSVA 277 (297)
T ss_dssp --------CCCCCCCCHHHHHHHTTSCCCSSC
T ss_pred ---cc--cccccCCcCHHHHHHHHHHcCCCCC
Confidence 00 0012246889999999998887643
No 52
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.8e-27 Score=254.63 Aligned_cols=260 Identities=36% Similarity=0.612 Sum_probs=211.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
..+..+|++|+|++.+++.|++.+..|+.+++.+..++ .++.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 45678999999999999999999999999998887664 67789999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC--CCcEEEEEecCCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--RAHVIVIGATNRPNSID 270 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~--~~~vivI~atn~~~~ld 270 (719)
.+.+.....++.+|..+....|++|||||+|.+...+.........++..+++..+++... ..+++||++||.++.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 9999999999999999999999999999999998876544445567788888888887642 45799999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
+++++ ||...+.++.|+.++|.++++.+++..... .+..+..++..+.||+++++..+|.+|...++++......
T Consensus 236 ~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~-- 311 (357)
T 3d8b_A 236 EAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI-- 311 (357)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-----
T ss_pred HHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh--
Confidence 99998 999999999999999999999887654432 4557899999999999999999999998887775422110
Q ss_pred cchhhHhHhhccccchHHHHHhhccCCCCcc
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTSNPSAL 380 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 380 (719)
..+ .......++.+||..++..+.|+..
T Consensus 312 -~~~--~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 312 -ATI--TPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp ----------CCCBCHHHHHHHHHHHGGGCC
T ss_pred -ccc--cccccCCcCHHHHHHHHHhcCCCCC
Confidence 000 0112356889999999988877643
No 53
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.95 E-value=1.2e-26 Score=241.18 Aligned_cols=226 Identities=44% Similarity=0.762 Sum_probs=195.7
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhc
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 194 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~ 194 (719)
+.++|++++|+++.++++.++... +.++..+..+++..+++++|+||||||||||++++++.++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 578899999999999999888765 6677888999999899999999999999999999999999999999999988777
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCH
Q 005014 195 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 271 (719)
Q Consensus 195 ~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~ 271 (719)
.+.....++.+|+.+....|+++|+||++.+...+... ......+.+.+++..+++......+++++++|.|+.+|+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 77778889999999988889999999999887654321 122234566777888887776677899999999999999
Q ss_pred HhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHh
Q 005014 272 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 341 (719)
Q Consensus 272 al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 341 (719)
++.|++||+..+.++.|+.++|.+||+.+.+...+..+.++..++..++||+++||..+|.+|+..+..+
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988888888888999999999999999999999998766543
No 54
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=4.6e-28 Score=253.34 Aligned_cols=176 Identities=23% Similarity=0.337 Sum_probs=141.6
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHH----HhCCCEEEEEeccchh
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSI 498 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~il~iDEid~l 498 (719)
+.+++.++|||||||||||++|+++|++++.+|+.++++++.+.|+|+++..++.+|+.| +...||||||||||++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567788999999999999999999999999999999999999999999999999999998 5778999999999999
Q ss_pred hcccCCCCCCCCCchHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHH
Q 005014 499 ATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEE 567 (719)
Q Consensus 499 ~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~ 567 (719)
.++++.. ........++.+.|++.||+.. ...+++||+|||+++.||++++|||||+..|++ |+.+
T Consensus 112 ~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~ 188 (293)
T 3t15_A 112 AGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHH
T ss_pred cCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHH
Confidence 8865432 1222345678899999998553 456799999999999999999999999999974 6999
Q ss_pred HHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHH
Q 005014 568 SRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITE 605 (719)
Q Consensus 568 ~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~ 605 (719)
+|.+|++.++.. .+++.+.+++.+.+|+|++|..
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 999999988864 3577999999999999999864
No 55
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.94 E-value=1.1e-28 Score=274.14 Aligned_cols=361 Identities=20% Similarity=0.240 Sum_probs=236.6
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeEEEEechhhhh
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMS 192 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~--~~~i~v~~~~l~~ 192 (719)
+...|++++|.++.++.+.+++.. + ..+..++.++||+||||||||++|+++|+.++ .+|+.++++++.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~-~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL-I-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-H-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHH-H-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 344689999999999998887754 1 12456778999999999999999999999999 8999999999999
Q ss_pred hcccchHHHHHHHHHHH---HhcCCcEEEEccccccCCCCCCCchH----HHHH---------------HHHHHHHHhh-
Q 005014 193 KLAGESESNLRKAFEEA---EKNAPSIIFIDEIDSIAPKREKTHGE----VERR---------------IVSQLLTLMD- 249 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a---~~~~p~iL~iDEid~l~~~~~~~~~~----~~~~---------------v~~~L~~~l~- 249 (719)
++.++.+. ++.+|+.+ ....|++|||||+|.+++++...... ...+ +..+++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 99999998 77889999999999999877543111 0011 1122334443
Q ss_pred -cccCCCcEEEEEecCCCCCCCHHhhccCCCce--EEEeCCCC--hHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCcc
Q 005014 250 -GLKSRAHVIVIGATNRPNSIDPALRRFGRFDR--EIDIGVPD--EVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVG 324 (719)
Q Consensus 250 -~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~--~i~i~~P~--~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~ 324 (719)
+......++|+++||.++.+|++++|++||+. .+.++.|+ .++|.+|++.++. .++..++..++| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 22333456666899999999999999999999 56677774 4778777754331 267888888998 8
Q ss_pred ccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccCCCccccccccHHHHHH
Q 005014 325 ADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRE 404 (719)
Q Consensus 325 ~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~ 404 (719)
+|+..+|....... . ..+ ...
T Consensus 254 adl~~l~~~i~~p~--~------------------------~~I---------------------------------~~~ 274 (456)
T 2c9o_A 254 QDILSMMGQLMKPK--K------------------------TEI---------------------------------TDK 274 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHhhhcccc--h------------------------hhH---------------------------------HHH
Confidence 88877764311000 0 000 000
Q ss_pred hhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHh
Q 005014 405 LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 484 (719)
Q Consensus 405 l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~ 484 (719)
+.+ .+.+ .+...++....
T Consensus 275 lr~----------------------------------~I~~----------------------------~l~~~~~~g~~ 292 (456)
T 2c9o_A 275 LRG----------------------------------EINK----------------------------VVNKYIDQGIA 292 (456)
T ss_dssp --C----------------------------------HHHH----------------------------HHHHHHHTTSE
T ss_pred HHH----------------------------------HHHH----------------------------HHHHHHHhccc
Confidence 000 0000 00111111110
Q ss_pred -CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEe---------cC---CCCCCCcccCC
Q 005014 485 -SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA---------TN---RPDIIDPALLR 551 (719)
Q Consensus 485 -~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~a---------tn---~~~~ld~allr 551 (719)
..|.|+||||+|.+. ....+.|+..|+.-... ++|+++ |+ .|+.|+|.+++
T Consensus 293 ~v~~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~~--~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s 356 (456)
T 2c9o_A 293 ELVPGVLFVDEVHMLD--------------IECFTYLHRALESSIAP--IVIFASNRGNCVIRGTEDITSPHGIPLDLLD 356 (456)
T ss_dssp EEEECEEEEESGGGCB--------------HHHHHHHHHHTTSTTCC--EEEEEECCSEEECBTTSSCEEETTCCHHHHT
T ss_pred cccceEEEEechhhcC--------------HHHHHHHHHHhhccCCC--EEEEecCCccccccccccccccccCChhHHh
Confidence 112599999999973 46789999999865443 555555 33 27788999998
Q ss_pred CCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005014 552 PGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYT-QGFSGADITEICQRACKYAIRENIEKDIERERRR 629 (719)
Q Consensus 552 pgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~-~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~ 629 (719)
||.. +.|++|+.++..+|++..+...... .+..+..+++.+ . -+.+..-++++.|...|..++
T Consensus 357 --R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~-g~~r~a~~ll~~a~~~A~~~~----------- 421 (456)
T 2c9o_A 357 --RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTK-TTLRYSVQLLTPANLLAKING----------- 421 (456)
T ss_dssp --TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHH-SCHHHHHHTHHHHHHHHHHTT-----------
T ss_pred --hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHhhcC-----------
Confidence 9986 6999999999999999888644432 222356677776 5 488888888888877776543
Q ss_pred cCCCcccccccccccccccHHHHHHHHhhc
Q 005014 630 SENPEAMEEDVEDEVAEIKAVHFEESMKYA 659 (719)
Q Consensus 630 ~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~ 659 (719)
...|+.+|+..|+.-+
T Consensus 422 --------------~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 422 --------------KDSIEKEHVEEISELF 437 (456)
T ss_dssp --------------CSSBCHHHHHHHHHHS
T ss_pred --------------CCccCHHHHHHHHHHh
Confidence 2479999999998875
No 56
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=2.7e-26 Score=250.14 Aligned_cols=258 Identities=36% Similarity=0.568 Sum_probs=202.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
....++|++|+|.+.+++.|.+.+..++.+++++..++ .++.++||+||||||||++|+++|..++.+++.++|.++.+
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 34567899999999999999999999999998888765 45789999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC--CCcEEEEEecCCCCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--RAHVIVIGATNRPNSID 270 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~--~~~vivI~atn~~~~ld 270 (719)
.+.|..+..++.+|..+....|++|||||||.++..+.........++...|+..+++... ...++||++||.++.++
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 9999999999999999999999999999999998776544444567788888888887764 45799999999999999
Q ss_pred HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccc
Q 005014 271 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 349 (719)
Q Consensus 271 ~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 349 (719)
+++++ ||...+.++.|+.++|.+|++.++...... .+..+..++..+.||+++++..++..+...++++........
T Consensus 267 ~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~ 344 (389)
T 3vfd_A 267 EAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN 344 (389)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---C
T ss_pred HHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 99998 999999999999999999999887654332 345688999999999999999999999888777643211100
Q ss_pred cchhhHhHhhccccchHHHHHhhccCCCC
Q 005014 350 DETIDAEILNSMAVTDEHFKTALGTSNPS 378 (719)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps 378 (719)
. .......++.+||..++....++
T Consensus 345 ~-----~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 345 M-----SASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp C-----SSSCCCCCCHHHHHHHHHHCCCS
T ss_pred c-----chhhcCCcCHHHHHHHHHHcCCC
Confidence 0 00122457888999988877655
No 57
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=3.5e-28 Score=251.39 Aligned_cols=249 Identities=43% Similarity=0.695 Sum_probs=203.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
.+..+|++++|++++++.+++++.. +.+|+.+..++...+.++||+||||||||++|+++|+.++.+++.+++.++...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4567899999999999999998876 889999999999999999999999999999999999999999999999998888
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc----hHHHHHHHHHHHHHhhcccC-CCcEEEEEecCCCCC
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH----GEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNS 268 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~----~~~~~~v~~~L~~~l~~~~~-~~~vivI~atn~~~~ 268 (719)
+.+.....++.+|+.+....|++|||||+|.+...+.... .....+.+.+|+..+++... ...++||++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 8777777778899999888999999999999987542110 00011233456666665543 345899999999999
Q ss_pred CCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhcccccc
Q 005014 269 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 348 (719)
Q Consensus 269 ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 348 (719)
+++++.+++||+..+.++.|+.++|.++++.+++.+.+..+.++..++..+.||+++++..++.+|...+....
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~------ 237 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN------ 237 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC------
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999888877777788899999999999999999999876543211
Q ss_pred ccchhhHhHhhccccchHHHHHhhccCCCCcc
Q 005014 349 EDETIDAEILNSMAVTDEHFKTALGTSNPSAL 380 (719)
Q Consensus 349 ~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 380 (719)
...++.+++..++....|+..
T Consensus 238 -----------~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 238 -----------QKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp -----------CCSCCHHHHHTSCTTCCCCCC
T ss_pred -----------cCCcCHHHHHHHHHHHhhcch
Confidence 234778888888877766543
No 58
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.93 E-value=1e-24 Score=236.62 Aligned_cols=390 Identities=19% Similarity=0.269 Sum_probs=193.1
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCC-CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh-hcccc
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK-PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 197 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~-~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~-~~~g~ 197 (719)
++|+|++++++.|...+..+++++.++..+... ++.++||+||||||||++++++|+.++.+++.++++.+.. .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 369999999999998888777777666555433 5678999999999999999999999999999999998887 58884
Q ss_pred -hHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEe-cCCCCCCCHHhhc
Q 005014 198 -SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA-TNRPNSIDPALRR 275 (719)
Q Consensus 198 -~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~a-tn~~~~ld~al~r 275 (719)
.+..++.+|+.+... +++||++.+... .....+++++.+|+..|+++.....+ +++ ||.++.+|++|++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 788999999988764 358998876533 34456789999999999998766554 444 9999999999999
Q ss_pred cCCCceEEEeCCCChH-HHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhh
Q 005014 276 FGRFDREIDIGVPDEV-GRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID 354 (719)
Q Consensus 276 ~~Rf~~~i~i~~P~~~-~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~ 354 (719)
++||+++|+++.|+.. .|.+|+.. ..+. ++ +.++..++..
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~~~--~g~~--------~~--------~~~~~~~~~~--------------------- 206 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIMAP--PGME--------EM--------TNQLQSLFQN--------------------- 206 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEcCCCCccchhhhhcC--CChH--------HH--------HHHHHHHHHh---------------------
Confidence 9999999999999987 77777643 0000 00 0000000000
Q ss_pred HhHhhccccchHHHHHhhccCCCCcccceeeccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeec
Q 005014 355 AEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYG 434 (719)
Q Consensus 355 ~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~G 434 (719)
..|..... ..++. .+.++ +|
T Consensus 207 --------------------~~~~~~~~-----~~~~v------~~a~~--------------------------~l--- 226 (444)
T 1g41_A 207 --------------------LGSDKTKK-----RKMKI------KDALK--------------------------AL--- 226 (444)
T ss_dssp ----------------------------------------------------------------------------C---
T ss_pred --------------------hcCCCCcc-----eeeeH------HHHHH--------------------------HH---
Confidence 00000000 00000 00000 00
Q ss_pred CCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchH
Q 005014 435 PPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAAD 514 (719)
Q Consensus 435 ppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~ 514 (719)
..+-..+.+ ..+...+...+.|... .|+|+||||+++...+.. ..+-...
T Consensus 227 -------------------------~~~e~~~l~-~~~~~~~~ai~~ae~~--~il~~DEidki~~~~~~~--~~D~s~e 276 (444)
T 1g41_A 227 -------------------------IDDEAAKLI-NPEELKQKAIDAVEQN--GIVFIDEIDKICKKGEYS--GADVSRE 276 (444)
T ss_dssp -------------------------CGGGSCSSC-CHHHHHHHHHHHHHHH--CEEEEETGGGGSCCSSCS--SSHHHHH
T ss_pred -------------------------HHHHHHHcc-CHHHHHHHHHHHhccC--CeeeHHHHHHHhhccCCC--CCCchHH
Confidence 000011111 2344556666666444 399999999998653321 1111223
Q ss_pred HHHHHHHHHhcCCC--------CCCcEEEEEec----CCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHH---H----
Q 005014 515 RVLNQLLTEMDGMS--------AKKTVFIIGAT----NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFK---A---- 575 (719)
Q Consensus 515 ~~~~~ll~~ld~~~--------~~~~v~vi~at----n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~---~---- 575 (719)
-+.+.||..|++-. +.+++++|||. +.|..+-|.|+. ||+.+|.|+.++.++..+|+. .
T Consensus 277 gvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~ 354 (444)
T 1g41_A 277 GVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTE 354 (444)
T ss_dssp HHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHH
T ss_pred HHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHH
Confidence 47789999999842 45678999887 234445588876 999999999999999999993 1
Q ss_pred -Hhcc---CCCCCcc---CHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccc
Q 005014 576 -CLRK---SPVSKDV---DLRALAKY-------TQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVE 641 (719)
Q Consensus 576 -~~~~---~~~~~~~---d~~~la~~-------~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (719)
+.+. .+..-.+ -+..+++. |.+.-++-|++++..++..+..+.... .
T Consensus 355 q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~-------------------~ 415 (444)
T 1g41_A 355 QYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM-------------------N 415 (444)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGC-------------------T
T ss_pred HHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcccc-------------------C
Confidence 1111 1222112 24455543 234455677776666665555443110 1
Q ss_pred cccccccHHHHHHHHhhcCCCCCHHHHHHH
Q 005014 642 DEVAEIKAVHFEESMKYARRSVSDADIRKY 671 (719)
Q Consensus 642 ~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~ 671 (719)
.....|+.+.+...+ .+.+..+++.+|
T Consensus 416 ~~~~~i~~~~v~~~l---~~~~~~~dl~~~ 442 (444)
T 1g41_A 416 GQTVNIDAAYVADAL---GEVVENEDLSRF 442 (444)
T ss_dssp TCEEEECHHHHHHHH---TTTTTCHHHHHH
T ss_pred CCeEEEeHHHHHHhc---CccccCCChhcc
Confidence 123468888888766 445677778777
No 59
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=1.1e-26 Score=258.02 Aligned_cols=205 Identities=22% Similarity=0.301 Sum_probs=148.6
Q ss_pred cCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC--CeEEEEeccchh
Q 005014 387 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELL 464 (719)
Q Consensus 387 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~--~~~i~v~~~~l~ 464 (719)
.|...|++++|++++++.+...+.+ + ..+..+++++|||||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~-------~-~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL-------I-KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-------H-HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH-------H-HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 3566799999999999988876642 1 23556778999999999999999999999998 899999999999
Q ss_pred hhccCCchhhHHHHHHHH---HhCCCEEEEEeccchhhcccCCCCCCC-CC---------------chHHHHHHHHHHhc
Q 005014 465 TMWFGESEANVREIFDKA---RQSAPCVLFFDELDSIATQRGSSVGDA-GG---------------AADRVLNQLLTEMD 525 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a---~~~~p~il~iDEid~l~~~r~~~~~~~-~~---------------~~~~~~~~ll~~ld 525 (719)
++|+|+++. ++.+|+.| +...||||||||+|+++++|+...... .. ...++.++++..|+
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999998 99999999 888899999999999999886542111 00 01123345666665
Q ss_pred --CCCCCCcEEEEEecCCCCCCCcccCCCCCcce--EEEeCCCC--HHHHHHHHHHHhccCCCCCccCHHHHHHHccCCC
Q 005014 526 --GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ--LIYIPLPD--EESRLQIFKACLRKSPVSKDVDLRALAKYTQGFS 599 (719)
Q Consensus 526 --~~~~~~~v~vi~atn~~~~ld~allrpgRf~~--~i~~~~p~--~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~s 599 (719)
++...+.++|++|||+++.+|++++||||||+ .+++|.|+ .++|.+|++.+.. .|++.+++.+.|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 44555667778999999999999999999998 67888884 4778888765553 278899999999
Q ss_pred HHHHHHHHHH
Q 005014 600 GADITEICQR 609 (719)
Q Consensus 600 g~di~~~~~~ 609 (719)
|+||.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999954
No 60
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.90 E-value=7.9e-25 Score=268.71 Aligned_cols=155 Identities=19% Similarity=0.257 Sum_probs=114.3
Q ss_pred cCCCccccccccHHHHHHhhhccccCCCC----------hhhhhh------hcCC----------CCcc--eeeecCCCC
Q 005014 387 VPNVNWEDIGGLENVKRELQETVQYPVEH----------PEKFEK------FGMS----------PSKG--VLFYGPPGC 438 (719)
Q Consensus 387 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~----------~~~~~~------~~~~----------~~~g--ill~GppGt 438 (719)
.+.+.|++++|++++|+.+.+.+.||+.+ ++.++. .|.. +|+| +++||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34589999999999999999999998844 445554 2222 4455 999999999
Q ss_pred chhHHHHHHHHHhCC---e--EEEEec--cchh--------hhccCC----chhhHHHHHHHHHhCCCEEEEEeccchhh
Q 005014 439 GKTLLAKAIANECQA---N--FISVKG--PELL--------TMWFGE----SEANVREIFDKARQSAPCVLFFDELDSIA 499 (719)
Q Consensus 439 GKT~la~~la~~~~~---~--~i~v~~--~~l~--------~~~~g~----se~~i~~~f~~a~~~~p~il~iDEid~l~ 499 (719)
|||+||++++.+... + ||.+.. ++++ ++|+++ +|+.++.+|..||+.+||++|+||+|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 999999999988743 3 554443 3343 778888 89999999999999999999999999999
Q ss_pred ccc---CCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005014 500 TQR---GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 542 (719)
Q Consensus 500 ~~r---~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~ 542 (719)
+.+ +...+...+...|+++++|++|+++....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 984 3322212367889999999999998888888888 77773
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.88 E-value=3e-22 Score=209.20 Aligned_cols=174 Identities=23% Similarity=0.307 Sum_probs=137.3
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHH----HhcCCcEEEEcccccc
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSI 225 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~iL~iDEid~l 225 (719)
+..++.++||+||||||||++|+++|+.++.+++.++++++.+.+.|..+..++.+|+.+ +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567889999999999999999999999999999999999999999999999999999988 5678999999999999
Q ss_pred CCCCCCCc--hHHHHHHHHHHHHHhhccc-----------CCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHH
Q 005014 226 APKREKTH--GEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292 (719)
Q Consensus 226 ~~~~~~~~--~~~~~~v~~~L~~~l~~~~-----------~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~ 292 (719)
.+..+... ....+++...|++++++.. ...+++||+|||.++.+|++++|++||+..+. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 87543221 1134567788888887433 45679999999999999999999999999887 579999
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHH
Q 005014 293 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAA 329 (719)
Q Consensus 293 R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~ 329 (719)
|.+|++.+... .+.+...++..+.+|+++++..
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 99999977653 3456888999999999999864
No 62
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=2.8e-22 Score=211.39 Aligned_cols=216 Identities=21% Similarity=0.280 Sum_probs=169.3
Q ss_pred cccccccHHHHHHhhhccccCCCChhhhhhhcCCCC---cceeeecCCCCchhHHHHHHHHHhC-------CeEEEEecc
Q 005014 392 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGP 461 (719)
Q Consensus 392 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~gill~GppGtGKT~la~~la~~~~-------~~~i~v~~~ 461 (719)
+.+++|++.+++.|.+.+.++. .+......|+... .++||+||||||||++|+++|+.++ .+++.++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3479999999999998877643 3455555565443 3599999999999999999999873 389999999
Q ss_pred chhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 005014 462 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 541 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~ 541 (719)
++.+.|+|.++..+..+|..+. ++||||||+|.+...++. ......+++.|+..|+.. ..+++||++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 9999999999999999998873 579999999999865432 234578899999999864 346788899987
Q ss_pred CC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHc------cC-CCHHHHHHHHH
Q 005014 542 PD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYT------QG-FSGADITEICQ 608 (719)
Q Consensus 542 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-d~~~la~~~------~~-~sg~di~~~~~ 608 (719)
++ .++|+|++ ||+.+++|++|+.+++..|++.++++..+.-+. .+..++... .. .+++++.++++
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 54 35899998 999999999999999999999999876544222 244455542 22 34799999999
Q ss_pred HHHHHHHHHHHH
Q 005014 609 RACKYAIRENIE 620 (719)
Q Consensus 609 ~A~~~a~~~~~~ 620 (719)
.|...+..+.+.
T Consensus 257 ~a~~~~~~r~~~ 268 (309)
T 3syl_A 257 RARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999888777654
No 63
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.84 E-value=3.2e-22 Score=217.00 Aligned_cols=169 Identities=20% Similarity=0.269 Sum_probs=82.1
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhhcCC-CCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh-hccCC
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE 470 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-~~~g~ 470 (719)
++|+|++++|+.|...+..+..+...+..+... +++++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 468999999999988886654444433333322 4678999999999999999999999999999999999988 59995
Q ss_pred -chhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEe-cCCCCCCCcc
Q 005014 471 -SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA-TNRPDIIDPA 548 (719)
Q Consensus 471 -se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~a-tn~~~~ld~a 548 (719)
.+..++.+|+.++... ++||++.+.... .....++++++||++||++.+...+ +++ ||+|+.||+|
T Consensus 95 d~e~~lr~lf~~a~~~~----~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLV----RQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHHH----HHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcc----hhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 7999999999997753 589988765322 2345689999999999999766555 444 9999999999
Q ss_pred cCCCCCcceEEEeCCCCHH-HHHHHH
Q 005014 549 LLRPGRLDQLIYIPLPDEE-SRLQIF 573 (719)
Q Consensus 549 llrpgRf~~~i~~~~p~~~-~r~~Il 573 (719)
|+||||||+.|++++|+.. .|.+|+
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999987 677776
No 64
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.83 E-value=3.6e-20 Score=200.19 Aligned_cols=220 Identities=20% Similarity=0.268 Sum_probs=163.1
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC--eEEEEeccchhh
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT 465 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~~ 465 (719)
|...|+++.|.+..++.+...... +. .+..+++++||+||||||||++|+++|..++. +|+.+++..+.+
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~-------~~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM-------IR-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HH-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHH-------HH-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 455699999999998886544321 11 13445578999999999999999999999874 888898877544
Q ss_pred hccC-------------------------------------------------CchhhHHHHHHHHHh-----C----CC
Q 005014 466 MWFG-------------------------------------------------ESEANVREIFDKARQ-----S----AP 487 (719)
Q Consensus 466 ~~~g-------------------------------------------------~se~~i~~~f~~a~~-----~----~p 487 (719)
.+++ +....++..|..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 4332 224455556654433 1 26
Q ss_pred EEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEec-----------CCCCCCCcccCCCCCcc
Q 005014 488 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-----------NRPDIIDPALLRPGRLD 556 (719)
Q Consensus 488 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~at-----------n~~~~ld~allrpgRf~ 556 (719)
+||||||+|.+. ....+.|+..++.... .+++++++ |.++.+++++++ ||.
T Consensus 191 ~vl~IDEi~~l~--------------~~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHMLD--------------IESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGSB--------------HHHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhccccC--------------hHHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 899999999873 3467778888765432 35555554 357889999999 997
Q ss_pred eEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 005014 557 QLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEA 635 (719)
Q Consensus 557 ~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~ 635 (719)
. ++|++|+.+++..|++..+...+.. .+..++.+++.+.+.+++++.++|+.|...|..+.
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~----------------- 314 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK----------------- 314 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT-----------------
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----------------
Confidence 5 8999999999999999998775443 23347778888876799999999999998886543
Q ss_pred cccccccccccccHHHHHHHHhhc
Q 005014 636 MEEDVEDEVAEIKAVHFEESMKYA 659 (719)
Q Consensus 636 ~~~~~~~~~~~v~~~~~~~a~~~~ 659 (719)
...|+.+|+..|+..+
T Consensus 315 --------~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 315 --------GTEVQVDDIKRVYSLF 330 (368)
T ss_dssp --------CSSBCHHHHHHHHHHS
T ss_pred --------CCCCCHHHHHHHHHHh
Confidence 3479999999999874
No 65
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.83 E-value=5.6e-21 Score=216.00 Aligned_cols=229 Identities=21% Similarity=0.315 Sum_probs=152.0
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCC-CCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh--
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-- 465 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-- 465 (719)
..-++++.|++++++.+.+.+.. ..+... ++..++|+||||||||++|+++|+.++.+++.+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l--------~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAV--------QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHH--------HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHH--------HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 44577899999999998765432 122222 3456999999999999999999999999999998876543
Q ss_pred -------hccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCC---------
Q 005014 466 -------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--------- 529 (719)
Q Consensus 466 -------~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--------- 529 (719)
.|+|.....+...|..+....| |+||||||.+...+. ....+.||..||....
T Consensus 149 ~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~ 217 (543)
T 3m6a_A 149 EIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIE 217 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSC
T ss_pred hhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCC
Confidence 6888888889999998877766 999999999976432 1245667777775321
Q ss_pred ----CCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHh-----ccCCCC---CccC---HHHHHHH
Q 005014 530 ----KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL-----RKSPVS---KDVD---LRALAKY 594 (719)
Q Consensus 530 ----~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~-----~~~~~~---~~~d---~~~la~~ 594 (719)
..+++||+|||+++.++|+|++ ||+ +|+|++|+.+++..|++.++ +...+. -.++ +..++..
T Consensus 218 ~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 218 ETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp CCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred eeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 1578999999999999999999 996 79999999999999999877 223332 1233 3344443
Q ss_pred ccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhh
Q 005014 595 TQG-FSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKY 658 (719)
Q Consensus 595 ~~~-~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~ 658 (719)
..+ ...+++++.+..++..+..+.+.. ......|+.+|+.+++..
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~~-------------------~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVAE-------------------ERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHTT-------------------CCSCCEECTTTTHHHHCS
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHhc-------------------CCcceecCHHHHHHHhCC
Confidence 222 344777776666666555443321 012345777777777754
No 66
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.80 E-value=1.5e-19 Score=190.22 Aligned_cols=245 Identities=19% Similarity=0.296 Sum_probs=166.7
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhh-cCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh-hccCC
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE 470 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-~~~g~ 470 (719)
+++.|++.+++.+...+..+.........+ ....+.+++|+||||||||++|+++|..++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 357899999988887664321111110000 1134567999999999999999999999999999999998876 67664
Q ss_pred c-hhhHHHHHHHH-----HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC--------CCCcEEEE
Q 005014 471 S-EANVREIFDKA-----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFII 536 (719)
Q Consensus 471 s-e~~i~~~f~~a-----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi 536 (719)
. ...++.+|..+ +...++||||||+|.+...+... ..+.....+.+.|+..|++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 4 34567776533 11235799999999997755321 111122345788899898742 23467888
Q ss_pred Ee----cCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHH-----------hccCCCC---CccCHHHHHHHcc--
Q 005014 537 GA----TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC-----------LRKSPVS---KDVDLRALAKYTQ-- 596 (719)
Q Consensus 537 ~a----tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~-----------~~~~~~~---~~~d~~~la~~~~-- 596 (719)
++ ++.++.++|++++ ||+.+++|++|+.+++..|++.. ++..... .+..++.+++.+.
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 88 5678899999998 99989999999999999999831 1112221 2223566666652
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcC
Q 005014 597 -----GFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 660 (719)
Q Consensus 597 -----~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~ 660 (719)
+.+.+++.++|+.+...+..+... .......|+.+|+.+++....
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASD-------------------MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGG-------------------CTTCEEEECHHHHHHHTCSSS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCcc-------------------ccCCEEEEeeHHHHHHHHhhh
Confidence 468899999998887665433210 011223599999999998653
No 67
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=1.6e-19 Score=194.78 Aligned_cols=222 Identities=21% Similarity=0.312 Sum_probs=153.1
Q ss_pred ccccHHHHHHhhhccccCCCChhhh-hhhcC-CCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhh-ccCCc
Q 005014 395 IGGLENVKRELQETVQYPVEHPEKF-EKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGES 471 (719)
Q Consensus 395 i~g~~~~k~~l~~~i~~~~~~~~~~-~~~~~-~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~-~~g~s 471 (719)
+.|++.+++.+...+.......... ..... .++.++||+||||||||++|+++|..++.+|+.++++++... |+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 6799999998887763211110000 00011 245679999999999999999999999999999999998744 88876
Q ss_pred -hhhHHHHHHHH----HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC------------------
Q 005014 472 -EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS------------------ 528 (719)
Q Consensus 472 -e~~i~~~f~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~------------------ 528 (719)
+..++.+|+.+ ....++||||||||.+...|............++.+.||+.|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56678888776 4445789999999999887655432223334458999999999531
Q ss_pred -CCCcEEEEEecCCC----------CC-----------------------------------CCcccCCCCCcceEEEeC
Q 005014 529 -AKKTVFIIGATNRP----------DI-----------------------------------IDPALLRPGRLDQLIYIP 562 (719)
Q Consensus 529 -~~~~v~vi~atn~~----------~~-----------------------------------ld~allrpgRf~~~i~~~ 562 (719)
...++++|+++|.. .. ++|+|+. ||+.++.|+
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 22344555555532 11 6788887 999999999
Q ss_pred CCCHHHHHHHHHH----Hhc-------cCCCCCccC---HHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHH
Q 005014 563 LPDEESRLQIFKA----CLR-------KSPVSKDVD---LRALAKY--TQGFSGADITEICQRACKYAIREN 618 (719)
Q Consensus 563 ~p~~~~r~~Il~~----~~~-------~~~~~~~~d---~~~la~~--~~~~sg~di~~~~~~A~~~a~~~~ 618 (719)
+|+.+++.+|++. +++ .......++ ++.|++. ...+..++|+++++++...++.+.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999999986 322 112222223 4556643 345667999999999988776643
No 68
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.79 E-value=7e-19 Score=181.88 Aligned_cols=176 Identities=26% Similarity=0.385 Sum_probs=134.4
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCch----hhHHHHHHHHHhCCCEEEEEeccchh
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELDSI 498 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se----~~i~~~f~~a~~~~p~il~iDEid~l 498 (719)
+..++.++||+||||||||++|+++|...+.+|+.+++++ .+.|..+ ..++.+|+.+....+++|||||||.+
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 4566778999999999999999999999999999998876 3455443 56788999998888999999999999
Q ss_pred hcccCCCCCCCCCchHHHHHHHHHHhcCCC-CCCcEEEEEecCCCCCCCc-ccCCCCCcceEEEeCCCCH-HHHHHHHHH
Q 005014 499 ATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNRPDIIDP-ALLRPGRLDQLIYIPLPDE-ESRLQIFKA 575 (719)
Q Consensus 499 ~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~atn~~~~ld~-allrpgRf~~~i~~~~p~~-~~r~~Il~~ 575 (719)
++.+..+ ......+++.|+..+++.. ...+++||+|||.++.+|+ .+.+ ||+..|++|+++. ++...++..
T Consensus 137 ~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 137 LDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp TTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred hccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 8766432 2345677888888888765 3457889999999999988 4554 9999999987765 555555544
Q ss_pred HhccCCCCCccCHHHHHHHccCC----CHHHHHHHHHHHH
Q 005014 576 CLRKSPVSKDVDLRALAKYTQGF----SGADITEICQRAC 611 (719)
Q Consensus 576 ~~~~~~~~~~~d~~~la~~~~~~----sg~di~~~~~~A~ 611 (719)
...+ .+.++..+++.+.|| +-+++.++++.|.
T Consensus 211 ---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 211 ---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp ---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred ---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 2223 345688888888887 4566666666554
No 69
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=9.3e-18 Score=179.08 Aligned_cols=194 Identities=22% Similarity=0.298 Sum_probs=147.6
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 468 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 468 (719)
...|+++.|.+.+++.+...+.... . .-.+..++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAK-------K-RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHH-------H-TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHH-------h-cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 3479999999999999887765321 1 123456799999999999999999999999999999987652
Q ss_pred CCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC----------------CCCc
Q 005014 469 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 532 (719)
Q Consensus 469 g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~ 532 (719)
....+..++.. ...+++||||||+.+. ....+.|+..|+... ...+
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRLS--------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGCC--------------HHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhcC--------------HHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 23344455543 3456899999999873 345667777776532 1124
Q ss_pred EEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 533 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 533 v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
+++|++||+...+++++++ ||+.+++|++|+.+++..|++.++.+.+.. .+..+..+++.+. .+.+++.++++.+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR-STPRIALRLLKRVR 231 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT-TCHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 8999999999999999998 999999999999999999999999876543 2223556666444 46788899998887
Q ss_pred HHHH
Q 005014 612 KYAI 615 (719)
Q Consensus 612 ~~a~ 615 (719)
..+.
T Consensus 232 ~~a~ 235 (338)
T 3pfi_A 232 DFAD 235 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 70
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.75 E-value=3.2e-18 Score=166.04 Aligned_cols=124 Identities=75% Similarity=1.399 Sum_probs=102.9
Q ss_pred CCHHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccCCcccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEE
Q 005014 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEF 80 (719)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f 80 (719)
||+.+|+|+|+++||.|+|+++.+++.|++|+|+|..+++.++.++.+..||++||....+||.+||+|.+...++.+.|
T Consensus 87 id~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f 166 (211)
T 3qwz_A 87 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEF 166 (211)
T ss_dssp ECHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEE
T ss_pred eCHHHHhhcCCCCCCEEEEEECCCCCCceEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEE
Confidence 68999999999999999999976799999999999987766677777899999999766799999999999877788999
Q ss_pred EEEEecCCceEEECCCceEEecCCCccccc-cccCCCCccccccc
Q 005014 81 KVIETDPPEYCVVAPDTEIFCEGEPVRRED-ENRLDEVGYDDVGG 124 (719)
Q Consensus 81 ~v~~~~p~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~i~G 124 (719)
+|++++|.++|+|+++|.|.+.++|+.+++ ...++.++|+||||
T Consensus 167 ~Vv~t~P~g~viV~~~T~I~~~~~pv~~~~~e~~~~~VtYeDIGG 211 (211)
T 3qwz_A 167 XVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 211 (211)
T ss_dssp EEEEEESSSEEEECTTCEEECCSCCBCCCGGGSCCC---------
T ss_pred EEEeecCCCCEEECCCcEEEEcCcccccccccccCCCcceeCCCC
Confidence 999999999999999999999999987654 33678899999998
No 71
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.74 E-value=1.7e-17 Score=174.66 Aligned_cols=211 Identities=17% Similarity=0.247 Sum_probs=156.2
Q ss_pred cccchHHHHHHHHHHHHcccCChhhHhhhCCCC---CceEEEECCCCCChHHHHHHHHHHhC-------CeEEEEechhh
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPEI 190 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~---~~~vLL~GppGtGKTtla~~la~~l~-------~~~i~v~~~~l 190 (719)
+++|+++.++.|.+++..+. .+..+..+|+.. +.++||+||||||||++|+++|+.++ .+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999988744 466677777653 44699999999999999999999873 37899999999
Q ss_pred hhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCC---
Q 005014 191 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--- 267 (719)
Q Consensus 191 ~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~--- 267 (719)
.+.+.|.....+..+|..+ .+++|||||+|.+...++. ......+...|+..++.. ..++++|++++.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN--RDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHH
Confidence 9888888888888888876 4579999999999865432 122345677788888764 34667777877542
Q ss_pred --CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHh------CC-CccccHHHHHHHHHHH
Q 005014 268 --SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT------HG-YVGADLAALCTEAALQ 337 (719)
Q Consensus 268 --~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t------~g-~~~~dl~~l~~~a~~~ 337 (719)
.++|++++ ||+..+.++.|+.+++..|++.++...... ....+..++... .. -..+++..++..+...
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 24688887 899999999999999999999887644332 222344455442 11 2356777777777665
Q ss_pred HHHh
Q 005014 338 CIRE 341 (719)
Q Consensus 338 ~~~~ 341 (719)
+..+
T Consensus 262 ~~~r 265 (309)
T 3syl_A 262 QANR 265 (309)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 72
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.73 E-value=1.1e-17 Score=181.40 Aligned_cols=244 Identities=17% Similarity=0.203 Sum_probs=151.4
Q ss_pred cccccHHHHHHhhhccccCCCChhhh-----------------hhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEE
Q 005014 394 DIGGLENVKRELQETVQYPVEHPEKF-----------------EKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 456 (719)
Q Consensus 394 ~i~g~~~~k~~l~~~i~~~~~~~~~~-----------------~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i 456 (719)
.++|++.+|+.|...+.........- ..-...++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 47899999999987763222111100 0001234567999999999999999999999999999
Q ss_pred EEeccchh-hhccCCc-hhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC--
Q 005014 457 SVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-- 528 (719)
Q Consensus 457 ~v~~~~l~-~~~~g~s-e~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-- 528 (719)
.+++..+. ..|+|.. +..+..+|..+. ...++|+||||+|.+...|+......+.....+.+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 4677765 445666665432 235689999999999876543322222233458899999999641
Q ss_pred -----------------CCCcEEEEEecCCC-----------------------------------------CCCCcccC
Q 005014 529 -----------------AKKTVFIIGATNRP-----------------------------------------DIIDPALL 550 (719)
Q Consensus 529 -----------------~~~~v~vi~atn~~-----------------------------------------~~ld~all 550 (719)
...++++|+|||.. ..+.|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12456788887721 12456677
Q ss_pred CCCCcceEEEeCCCCHHHHHHHHHH----Hhc-------cCCCCCccC---HHHHHHHcc--CCCHHHHHHHHHHHHHHH
Q 005014 551 RPGRLDQLIYIPLPDEESRLQIFKA----CLR-------KSPVSKDVD---LRALAKYTQ--GFSGADITEICQRACKYA 614 (719)
Q Consensus 551 rpgRf~~~i~~~~p~~~~r~~Il~~----~~~-------~~~~~~~~d---~~~la~~~~--~~sg~di~~~~~~A~~~a 614 (719)
+ ||+.++.|++++.++...|++. +++ .......++ ++.|++... ....+++.+++..+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 6 9999999999999999999962 211 111111222 455665543 367899999999998887
Q ss_pred HHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhh
Q 005014 615 IRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKY 658 (719)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~ 658 (719)
+.+.... ......|+.+++..+...
T Consensus 340 ~~~~~~~-------------------~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 340 MFDLPKL-------------------KGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHTGGGG-------------------TTSEEEECHHHHTTSSCC
T ss_pred HhhccCC-------------------CCCEEEEeHHHhcCCCCc
Confidence 7654211 012346888888776543
No 73
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.72 E-value=9.6e-17 Score=170.04 Aligned_cols=194 Identities=23% Similarity=0.355 Sum_probs=142.1
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 468 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 468 (719)
..+|+++.|.+..++.+...+... .. .-..+.+++|+||||||||++|+++++.++.+++.++++.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~-------~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAA-------KA-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHH-------HH-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred cccHHHhhCHHHHHHHHHHHHHHH-------Hc-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 347889999999988887765421 11 1123467999999999999999999999999999998876522
Q ss_pred CCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC----------------CCCc
Q 005014 469 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 532 (719)
Q Consensus 469 g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~ 532 (719)
...+...|..+ ...+++|||||++.+.. ...+.|+..++... ...+
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~--------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSR--------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCH--------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCccccc--------------chHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 23333333321 14568999999998742 23455555555321 1125
Q ss_pred EEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 533 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 533 v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
+.+|++||+++.+++++.+ ||+.++.+++|+.+++..+++.++.+.+..- +..+..++..+.| +.+++.++++.+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 7899999999999999998 9998999999999999999999987665432 2336677777754 6688888888876
Q ss_pred HHH
Q 005014 612 KYA 614 (719)
Q Consensus 612 ~~a 614 (719)
..+
T Consensus 216 ~~a 218 (324)
T 1hqc_A 216 DFA 218 (324)
T ss_dssp TTS
T ss_pred HHH
Confidence 555
No 74
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.70 E-value=6.5e-17 Score=178.22 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=138.2
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcc
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 501 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~ 501 (719)
+.+++||||||||||+||+++++.+ +.+++.+++.++...+.+.........|.......+++|||||++.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4679999999999999999999988 78899999988766554433222223444444436789999999998642
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC---CCcccCCCCCcc--eEEEeCCCCHHHHHHHHHHH
Q 005014 502 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKAC 576 (719)
Q Consensus 502 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 576 (719)
+ ...+.|+..|+.+...+..+||++.+.+.. +++++++ ||. .++.+++|+.++|..|++..
T Consensus 210 ~------------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 210 T------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp H------------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred h------------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 233445555544434455666666666654 7899998 886 78999999999999999999
Q ss_pred hccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHH
Q 005014 577 LRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEES 655 (719)
Q Consensus 577 ~~~~~~~~-~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a 655 (719)
+...++.- +..+..++..+. .+.+++.+++..+...|.... ..|+.+++.++
T Consensus 276 ~~~~~~~i~~e~l~~la~~~~-gn~R~l~~~L~~~~~~a~~~~--------------------------~~It~~~~~~~ 328 (440)
T 2z4s_A 276 LEIEHGELPEEVLNFVAENVD-DNLRRLRGAIIKLLVYKETTG--------------------------KEVDLKEAILL 328 (440)
T ss_dssp HHHHTCCCCTTHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHSS--------------------------SCCCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhC--------------------------CCCCHHHHHHH
Confidence 87544332 223677888776 489999999999887764321 14777777777
Q ss_pred HhhcC
Q 005014 656 MKYAR 660 (719)
Q Consensus 656 ~~~~~ 660 (719)
++...
T Consensus 329 l~~~~ 333 (440)
T 2z4s_A 329 LKDFI 333 (440)
T ss_dssp TSTTT
T ss_pred HHHHh
Confidence 77654
No 75
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.69 E-value=8.1e-17 Score=177.15 Aligned_cols=230 Identities=21% Similarity=0.310 Sum_probs=153.6
Q ss_pred CCccccccccHHHH---HHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 389 NVNWEDIGGLENVK---RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 389 ~~~~~~i~g~~~~k---~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
..+|+++.|.+.+. +.|...+.. + ...+++|+||||||||++|+++|+.++.+|+.+++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~-----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~--- 85 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA-----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT--- 85 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH-----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT---
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc-----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc---
Confidence 35688999999887 455544432 1 1257999999999999999999999999999998643
Q ss_pred hccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEec--
Q 005014 466 MWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-- 539 (719)
Q Consensus 466 ~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~at-- 539 (719)
...+.++.+|..+.. ..+.||||||||.+... ..+.||..|+. ..+++|++|
T Consensus 86 ----~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 86 ----SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESS
T ss_pred ----CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCCC
Confidence 234567777766653 45789999999998431 23456677764 346677666
Q ss_pred CCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCC-------CC-CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 540 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP-------VS-KDVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 540 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~-------~~-~~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
|....+++++++ |+. ++.|++|+.+++..+++..+.+.. +. .+..++.+++.+. -+.+++.+++..|.
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~-Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVN-GDARRALNTLEMMA 219 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHC-SCHHHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 445689999999 886 788999999999999999987621 11 2223566777755 47788888888776
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccC
Q 005014 612 KYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG 683 (719)
Q Consensus 612 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~sv~~~~~~~~~~~~~~~~~~~~ 683 (719)
..+... ......|+.+++.+++........+..-..|.....-.+.-|+
T Consensus 220 ~~a~~~-----------------------~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirg 268 (447)
T 3pvs_A 220 DMAEVD-----------------------DSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRG 268 (447)
T ss_dssp HHSCBC-----------------------TTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHT
T ss_pred Hhcccc-----------------------cCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhC
Confidence 544210 0012368888888888766544444333444444443333333
No 76
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.69 E-value=7e-16 Score=167.25 Aligned_cols=205 Identities=17% Similarity=0.191 Sum_probs=143.7
Q ss_pred cccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---------CCeEEEEeccc
Q 005014 392 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPE 462 (719)
Q Consensus 392 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---------~~~~i~v~~~~ 462 (719)
.+++.|.+...+.+...+.... ....+.+++|+||||||||++++++++.+ +..++.+++..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 3678888888888877664321 11345679999999999999999999988 78899999875
Q ss_pred hhhh----------------ccCCchhh-HHHHHHHHHh-CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHh
Q 005014 463 LLTM----------------WFGESEAN-VREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 524 (719)
Q Consensus 463 l~~~----------------~~g~se~~-i~~~f~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~l 524 (719)
..+. +.|.+... ...+++.... ..|++|||||+|.+...+ ....++..++..+
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRIN 159 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhch
Confidence 4321 11222333 4455555443 347899999999986532 1346677777777
Q ss_pred cCCCCCCcEEEEEecCCC---CCCCcccCCCCCcce-EEEeCCCCHHHHHHHHHHHhcc--CCCC-CccCHHHHHHHccC
Q 005014 525 DGMSAKKTVFIIGATNRP---DIIDPALLRPGRLDQ-LIYIPLPDEESRLQIFKACLRK--SPVS-KDVDLRALAKYTQG 597 (719)
Q Consensus 525 d~~~~~~~v~vi~atn~~---~~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~~~~--~~~~-~~~d~~~la~~~~~ 597 (719)
+......++.+|++||.+ +.+++++.+ ||.. .++|++|+.+++..|++..+.. .+.. .+..++.+++.+..
T Consensus 160 ~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (387)
T 2v1u_A 160 QELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAR 237 (387)
T ss_dssp GCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHS
T ss_pred hhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 655324578899999987 778999998 8975 8999999999999999998864 2221 23336677777762
Q ss_pred --CCHHHHHHHHHHHHHHHHH
Q 005014 598 --FSGADITEICQRACKYAIR 616 (719)
Q Consensus 598 --~sg~di~~~~~~A~~~a~~ 616 (719)
-+.+.+.++|+.|...|..
T Consensus 238 ~~G~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 238 EHGDARRALDLLRVAGEIAER 258 (387)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHH
Confidence 3567888899998776653
No 77
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.69 E-value=1.7e-16 Score=168.24 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=123.6
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhccc
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 502 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r 502 (719)
.+.+++|+||||||||++|+++++.+ +.+++.+++.++...+.+.........|..... .+++|||||++.+...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh
Confidence 34679999999999999999999998 889999999888766554433332333433333 36899999999985421
Q ss_pred CCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC---CCCcccCCCCCcc--eEEEeCCCCHHHHHHHHHHHh
Q 005014 503 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEESRLQIFKACL 577 (719)
Q Consensus 503 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~ 577 (719)
.....++..++.....+..+|++++|.++ .+++++.+ ||+ .++.+++ +.+++..|++..+
T Consensus 115 ------------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~ 179 (324)
T 1l8q_A 115 ------------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKL 179 (324)
T ss_dssp ------------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHH
Confidence 12333444444333344567788887776 68899998 886 7899999 9999999999999
Q ss_pred ccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHH
Q 005014 578 RKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKY 613 (719)
Q Consensus 578 ~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~ 613 (719)
...++. .+..++.+++.+ .+.+++.+++..+...
T Consensus 180 ~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 180 KEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 765543 222367778777 5778888888887765
No 78
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.68 E-value=4.4e-16 Score=191.71 Aligned_cols=149 Identities=19% Similarity=0.270 Sum_probs=108.8
Q ss_pred CCccccccchHHHHHHHHHHHHcccCC----------hhhHhh------hC------------CCCCceEEEECCCCCCh
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRH----------PQLFKS------IG------------VKPPKGILLYGPPGSGK 167 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~----------~~~~~~------l~------------~~~~~~vLL~GppGtGK 167 (719)
.++|++++|+++.++.+.+.+.+|+.+ ++.++. .| ++.++.+||||||||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 468999999999999999999888844 555554 22 34555599999999999
Q ss_pred HHHHHHHHHHh---CCeEEEEechh----hh--------hhcccc----hHHHHHHHHHHHHhcCCcEEEEccccccCCC
Q 005014 168 TLIARAVANET---GAFFFCINGPE----IM--------SKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 168 Ttla~~la~~l---~~~~i~v~~~~----l~--------~~~~g~----~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~ 228 (719)
|+||++++.+. +.+.++|+..+ +. +++.++ .++.++.+|..++...|+++|+|++++|.+.
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcc
Confidence 99999998765 45555565544 22 456666 7899999999999999999999999999988
Q ss_pred CC---CC---chHHHHHHHHHHHHHhhcccCCCcEEEEEecCC
Q 005014 229 RE---KT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 265 (719)
Q Consensus 229 ~~---~~---~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~ 265 (719)
+. .. ......|+++|++..+++.....+|+|| +||+
T Consensus 1176 ~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1176 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred cccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 32 11 1256678899999999998777788888 4443
No 79
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.68 E-value=7.5e-16 Score=197.63 Aligned_cols=407 Identities=17% Similarity=0.216 Sum_probs=214.1
Q ss_pred CCceEEEECCCCCChHHHHH-HHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHH---------------hcCCcE
Q 005014 153 PPKGILLYGPPGSGKTLIAR-AVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAE---------------KNAPSI 216 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~-~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~---------------~~~p~i 216 (719)
.++++||+||||||||++|+ +++...+..++.++++...+ ...+...++... .+.++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 45789999999999999994 55554466777888765432 233444444321 233579
Q ss_pred EEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-C-------CcEEEEEecCCCC-----CCCHHhhccCCCceEE
Q 005014 217 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-R-------AHVIVIGATNRPN-----SIDPALRRFGRFDREI 283 (719)
Q Consensus 217 L~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~-~-------~~vivI~atn~~~-----~ld~al~r~~Rf~~~i 283 (719)
+||||++....+..+. .....+++|++.. .++.. + .++.+|||||+|. .+++++.| || ..+
T Consensus 1340 lFiDEinmp~~d~yg~--q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGS--QNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCSSSC--CHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEE
T ss_pred EEecccccccccccCc--hhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEE
Confidence 9999999755443222 2223444554431 12211 1 2588999999984 89999998 78 789
Q ss_pred EeCCCChHHHHHHHHHHhcCCC-CCCccc--HHHHH-----------HH-------hCCCccccHHHHHHHHH-------
Q 005014 284 DIGVPDEVGRLEVLRIHTKNMK-LSDDVD--LERIA-----------KD-------THGYVGADLAALCTEAA------- 335 (719)
Q Consensus 284 ~i~~P~~~~R~~il~~~~~~~~-l~~~~~--l~~la-----------~~-------t~g~~~~dl~~l~~~a~------- 335 (719)
.++.|+.+++..|+..+++.+. ...++. ...++ .. ..-|+.+|+..+++-..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~ 1493 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGP 1493 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchhh
Confidence 9999999999999987754321 111110 00111 10 12355666665554322
Q ss_pred ------------HHHHHhhccccccc-cchhhHhHhhccccchHHHHHhhccCCCCc--ccc-eeeccCCCccccccccH
Q 005014 336 ------------LQCIREKMDVIDLE-DETIDAEILNSMAVTDEHFKTALGTSNPSA--LRE-TVVEVPNVNWEDIGGLE 399 (719)
Q Consensus 336 ------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~al~~~~ps~--~~~-~~~~~~~~~~~~i~g~~ 399 (719)
.++.|-..+.+.-. +..+-.. +..+.+.+.+....... .+. ......+..++++.. +
T Consensus 1494 ~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~------~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~~-~ 1566 (2695)
T 4akg_A 1494 RQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQ------LLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNK-T 1566 (2695)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHH------HHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECCH-H
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHHHHhcccchhhhccCCceeeecCCCcceecCH-H
Confidence 12222222211100 0000000 00011111111100000 000 011111223555532 4
Q ss_pred HHHHHhhhcccc---------------CCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 400 NVKRELQETVQY---------------PVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 400 ~~k~~l~~~i~~---------------~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
.+++.+.+.+.. .+.|.-.+.++-..|..++||+|++||||++|+|..|..+++.++.+..+.-+
T Consensus 1567 ~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y 1646 (2695)
T 4akg_A 1567 DLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHS 1646 (2695)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTC
T ss_pred HHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCC
Confidence 455554443321 12223334444456666799999999999999999999999999988755422
Q ss_pred hhccCCchhhHHHHHHHHHh-CCCEEEEEeccch-----------hhcccCCCCCCCCCchHHHHHHHHHHh--cCCC-C
Q 005014 465 TMWFGESEANVREIFDKARQ-SAPCVLFFDELDS-----------IATQRGSSVGDAGGAADRVLNQLLTEM--DGMS-A 529 (719)
Q Consensus 465 ~~~~g~se~~i~~~f~~a~~-~~p~il~iDEid~-----------l~~~r~~~~~~~~~~~~~~~~~ll~~l--d~~~-~ 529 (719)
+ ..+-...++.++..|.. ..|.+++|+|.+- |+....-..-=.....+.+++.+-... .|+. +
T Consensus 1647 ~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~~~~~g~~~~ 1724 (2695)
T 4akg_A 1647 N--LSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGLLLD 1724 (2695)
T ss_dssp C--HHHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHHHHHHHHHHHHHHHTCCCC
T ss_pred C--HHHHHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHhHHHHHhcCCCCC
Confidence 1 11234678899998854 5577888887642 222111000001112233444433221 2332 1
Q ss_pred -------------CCcEEEEEecCCCCC-------CCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC
Q 005014 530 -------------KKTVFIIGATNRPDI-------IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS 583 (719)
Q Consensus 530 -------------~~~v~vi~atn~~~~-------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~ 583 (719)
..+.-||.+-+.... .-|||.+ ++. +-.|.+=..++...+-+.++.+.++.
T Consensus 1725 t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~fr~R~r~fPaLvn--~ct-IdWf~~Wp~eAL~~Va~~fl~~~~~~ 1795 (2695)
T 4akg_A 1725 TEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFN--RCI-INWMGDWDTKTMSQVANNMVDVIPME 1795 (2695)
T ss_dssp SHHHHHHHHHHHHHHHCEEEEEESCTTSHHHHHHHHSHHHHH--HSE-EEECCSCCHHHHHHHHHHHSCSCCCC
T ss_pred CHHHHHHHHHHHHHHcCEEEEEECCCChHHHHHHHhChHhhc--cee-EeecCCCCHHHHHHHHHHHhhccCcc
Confidence 123445555443311 1367776 554 44555555778888888888776543
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=4.9e-16 Score=183.66 Aligned_cols=243 Identities=21% Similarity=0.256 Sum_probs=167.0
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEEe
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 459 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v~ 459 (719)
-.|+++.|.+...+.+.+.+.. ....+++|+||||||||++|+++|..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4678889998887777665432 245679999999999999999999986 56778888
Q ss_pred ccchh--hhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 460 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 460 ~~~l~--~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
...+. .+|.|+.+..++.+|+.+....++||||||++.+.+.++.. .....+ ...+..+.....+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----~~~~~~----~~~L~~~l~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-----GGQVDA----ANLIKPLLSSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS-----SCHHHH----HHHHSSCSSSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC-----cchHHH----HHHHHHHHhCCCeEEEE
Confidence 77776 57889999999999999988888999999999998764321 112222 23344444556788999
Q ss_pred ecCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccC----CCC-CccCHHHHHHHccC-----CCHHH
Q 005014 538 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS----PVS-KDVDLRALAKYTQG-----FSGAD 602 (719)
Q Consensus 538 atn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~d~~~la~~~~~-----~sg~d 602 (719)
+||.++ .+|++|.| ||+ .++|++|+.+++..||+.++... .+. .+..+..++..+.+ +.+..
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 998753 57899999 998 79999999999999999877542 221 12235556655444 45567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHH
Q 005014 603 ITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR----RSVSDADIRKYQAFAQTL 678 (719)
Q Consensus 603 i~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~----~sv~~~~~~~~~~~~~~~ 678 (719)
+..++.+|+..+.... .......|+.+|+..++.... +.++.++...+....+.+
T Consensus 398 ~i~lld~a~~~~~~~~---------------------~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l 456 (758)
T 1r6b_X 398 AIDVIDEAGARARLMP---------------------VSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_dssp HHHHHHHHHHHHHHSS---------------------SCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---------------------ccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHH
Confidence 7778877764332110 001123688888888877643 244444555555444433
No 81
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.67 E-value=1.1e-16 Score=168.55 Aligned_cols=208 Identities=22% Similarity=0.330 Sum_probs=143.7
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh----
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT---- 465 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~---- 465 (719)
+++.|.+.+++.+...+...... +.. ...+...++|+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CSC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 34668888888777665421000 000 11233469999999999999999999997 55699999877632
Q ss_pred -hccCCchh-----hHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC---------CC
Q 005014 466 -MWFGESEA-----NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AK 530 (719)
Q Consensus 466 -~~~g~se~-----~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~ 530 (719)
.++|.... ....+.........+++||||+|.+. ..+.+.|+..|+... +.
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH--------------PDVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC--------------HHHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 22221110 01223344445556899999999873 356788888877532 11
Q ss_pred CcEEEEEecCC--------------------------CCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccC----
Q 005014 531 KTVFIIGATNR--------------------------PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS---- 580 (719)
Q Consensus 531 ~~v~vi~atn~--------------------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~---- 580 (719)
.++++|+|||. ...++|+|++ ||+.++.|++|+.+++..|++.++++.
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36889999998 4578899997 999999999999999999999988652
Q ss_pred ---CCCCccC---HHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHH
Q 005014 581 ---PVSKDVD---LRALAKYTQ--GFSGADITEICQRACKYAIRENIE 620 (719)
Q Consensus 581 ---~~~~~~d---~~~la~~~~--~~sg~di~~~~~~A~~~a~~~~~~ 620 (719)
.....++ ++.|++... .++.++|+++++.+...++.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 1122233 555666544 567899999999999988877654
No 82
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.67 E-value=6.2e-16 Score=165.59 Aligned_cols=218 Identities=21% Similarity=0.276 Sum_probs=133.9
Q ss_pred cCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEE----Eeccc
Q 005014 387 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS----VKGPE 462 (719)
Q Consensus 387 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~----v~~~~ 462 (719)
.+...|+++.|.+.+++.+...... ....++||+||||||||++|++++..++..... +++..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3567899999999987765433221 112459999999999999999999987631100 01110
Q ss_pred h---------------------hhhccCCchhh------HHHHHHHH---------HhCCCEEEEEeccchhhcccCCCC
Q 005014 463 L---------------------LTMWFGESEAN------VREIFDKA---------RQSAPCVLFFDELDSIATQRGSSV 506 (719)
Q Consensus 463 l---------------------~~~~~g~se~~------i~~~f~~a---------~~~~p~il~iDEid~l~~~r~~~~ 506 (719)
. .....+.++.. +...|... ....++++|||||+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------- 157 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------- 157 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-------
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-------
Confidence 0 00001111111 11222221 01135799999999873
Q ss_pred CCCCCchHHHHHHHHHHhcCC----CC-------CCcEEEEEecCCCC-CCCcccCCCCCcceEEEeCCC-CHHHHHHHH
Q 005014 507 GDAGGAADRVLNQLLTEMDGM----SA-------KKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DEESRLQIF 573 (719)
Q Consensus 507 ~~~~~~~~~~~~~ll~~ld~~----~~-------~~~v~vi~atn~~~-~ld~allrpgRf~~~i~~~~p-~~~~r~~Il 573 (719)
....+.|+..|+.- .. ..++++|+|||..+ .++++|++ ||+.++++++| +.+++..|+
T Consensus 158 -------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il 228 (350)
T 1g8p_A 158 -------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVI 228 (350)
T ss_dssp -------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHH
T ss_pred -------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 23456666666531 11 12689999999754 89999999 99998999998 678888888
Q ss_pred HHHhc-------------------------------cCCCCCccCHHHHHHHccC--C-CHHHHHHHHHHHHHHHHHHHH
Q 005014 574 KACLR-------------------------------KSPVSKDVDLRALAKYTQG--F-SGADITEICQRACKYAIRENI 619 (719)
Q Consensus 574 ~~~~~-------------------------------~~~~~~~~d~~~la~~~~~--~-sg~di~~~~~~A~~~a~~~~~ 619 (719)
+..++ ...+ ++..++.+++...+ . +.+.+.++++.|...|..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~- 306 (350)
T 1g8p_A 229 RRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG- 306 (350)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC-
Confidence 76321 1111 12223444544433 2 55777788877776665432
Q ss_pred HHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhc
Q 005014 620 EKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 659 (719)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~ 659 (719)
...|+.+|+..|+..+
T Consensus 307 ------------------------~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 307 ------------------------ATAVGRDHLKRVATMA 322 (350)
T ss_dssp ------------------------CSBCCHHHHHHHHHHH
T ss_pred ------------------------CCcCCHHHHHHHHHHH
Confidence 2358888998887753
No 83
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.65 E-value=3.5e-15 Score=148.25 Aligned_cols=201 Identities=21% Similarity=0.229 Sum_probs=141.2
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE 462 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~ 462 (719)
+...|+++.|.+..++.+.+.+... ...+++|+||||||||+++++++..+ ...++.+++++
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 3456888999999988888766421 22349999999999999999999875 35678887765
Q ss_pred hhhhccCCchhhHHHHHHHH-H-----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEE
Q 005014 463 LLTMWFGESEANVREIFDKA-R-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 536 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a-~-----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 536 (719)
..+ ...+...+... . ...+.+|||||+|.+.. ...+.|+..++.. ..++.+|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~--~~~~~~i 136 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCRFI 136 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------------HHHHHHHHHHHhc--CCCCeEE
Confidence 322 12223222222 1 24678999999999742 2345566666543 3457888
Q ss_pred EecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 005014 537 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAI 615 (719)
Q Consensus 537 ~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~ 615 (719)
++||.++.+++++.+ ||. .+++++|+.++...+++..+.+.+.. .+..+..+++.+.| +.+.+.++++.++..+
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 899999999999998 898 99999999999999999988654443 22335566666543 5566666666554322
Q ss_pred HHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHh
Q 005014 616 RENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMK 657 (719)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~ 657 (719)
..|+.+|+..++.
T Consensus 212 -----------------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -----------------------------EVVDADTIYQITA 224 (226)
T ss_dssp -----------------------------SCBCHHHHHHHHH
T ss_pred -----------------------------ceecHHHHHHHhc
Confidence 2688899988875
No 84
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.1e-15 Score=159.45 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=128.5
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEEeccchhhh----------c------cCCchhhHHHH
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTM----------W------FGESEANVREI 478 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v~~~~l~~~----------~------~g~se~~i~~~ 478 (719)
..+.+++|+||||||||++++++++++ ...+++++|..+.+. . .|.+...+..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 456779999999999999999999998 357899998765432 2 23456678888
Q ss_pred HHHH--HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC----CCcccCCC
Q 005014 479 FDKA--RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI----IDPALLRP 552 (719)
Q Consensus 479 f~~a--~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~----ld~allrp 552 (719)
|+.. ....++|+|+||+|.+.. .+++..|+.... ....+++||+++|..+. |++++.+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~-------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLS-------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCC-------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhhc-------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 8875 456689999999999861 346666665433 24567999999999875 4556666
Q ss_pred CCcc-eEEEeCCCCHHHHHHHHHHHhccCCCC------------------------------------CccCHHHHHHHc
Q 005014 553 GRLD-QLIYIPLPDEESRLQIFKACLRKSPVS------------------------------------KDVDLRALAKYT 595 (719)
Q Consensus 553 gRf~-~~i~~~~p~~~~r~~Il~~~~~~~~~~------------------------------------~~~d~~~la~~~ 595 (719)
||. .+|+|++|+.++...|++..++...-. .+.-++.+|+..
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~v 265 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNV 265 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHH
Confidence 887 689999999999999999998653110 111255556543
Q ss_pred cC--CCHHHHHHHHHHHHHHHHHHHHHH
Q 005014 596 QG--FSGADITEICQRACKYAIRENIEK 621 (719)
Q Consensus 596 ~~--~sg~di~~~~~~A~~~a~~~~~~~ 621 (719)
.. -..+---++|+.|+..|.++.+.+
T Consensus 266 A~~~GD~R~Al~ilr~A~~~ae~e~~~k 293 (318)
T 3te6_A 266 ANVSGSTEKAFKICEAAVEISKKDFVRK 293 (318)
T ss_dssp HHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 21 233444468999999988877543
No 85
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.65 E-value=3.9e-15 Score=156.41 Aligned_cols=177 Identities=26% Similarity=0.410 Sum_probs=126.6
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhh-CCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh-hcccc
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSI-GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 197 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l-~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~-~~~g~ 197 (719)
+++.|.+++++.+...+..++..+.+...+ .-..+.++||+||||||||++|++++..++.+++.+++..+.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358999999999988876543333221111 0134678999999999999999999999999999999988765 34432
Q ss_pred -hHHHHHHHHHHH-----HhcCCcEEEEccccccCCCCCCCchH-HHHHHHHHHHHHhhccc--------CCCcEEEEEe
Q 005014 198 -SESNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGE-VERRIVSQLLTLMDGLK--------SRAHVIVIGA 262 (719)
Q Consensus 198 -~~~~l~~vf~~a-----~~~~p~iL~iDEid~l~~~~~~~~~~-~~~~v~~~L~~~l~~~~--------~~~~vivI~a 262 (719)
....++.++..+ ....+++|||||+|.+.+.......+ ....+...|+..+++.. ....+++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 234456655532 11235799999999998765432222 23345667777777532 2246677777
Q ss_pred ----cCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHH
Q 005014 263 ----TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLR 298 (719)
Q Consensus 263 ----tn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~ 298 (719)
++.+..+++++++ ||+..+.+++|+.+++.+|++
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 212 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHH
Confidence 4567789999997 999889999999999999987
No 86
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.64 E-value=1.5e-15 Score=156.69 Aligned_cols=196 Identities=21% Similarity=0.285 Sum_probs=131.2
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhh-hhcccc
Q 005014 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-SKLAGE 197 (719)
Q Consensus 119 ~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~-~~~~g~ 197 (719)
...+.|..+.++.+......- ...+...+..++.++||+||||||||++|+++|..++.+++.+++++.. +...+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred hcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 345667777766665532110 1122333456678899999999999999999999999999999887532 111122
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-CCCcEEEEEecCCCCCCCH-Hhhc
Q 005014 198 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDP-ALRR 275 (719)
Q Consensus 198 ~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-~~~~vivI~atn~~~~ld~-al~r 275 (719)
....++.+|+.+....+++|||||+|.++.....+ ......+...|...++... ....+++|++||.++.+++ .++
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~- 186 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML- 186 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh-
Confidence 33567888888887788999999999997654322 1223456667777777654 3447889999999877776 444
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCc
Q 005014 276 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYV 323 (719)
Q Consensus 276 ~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~ 323 (719)
+||...+.+|.++. |.++.........+ .+..+..++..+.||.
T Consensus 187 -~rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 187 -NAFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKK 230 (272)
T ss_dssp -TTSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSE
T ss_pred -cccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCC
Confidence 49988888866555 33344333222222 3456888999999873
No 87
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=3.5e-16 Score=176.21 Aligned_cols=203 Identities=17% Similarity=0.208 Sum_probs=129.6
Q ss_pred CCCccccccccHHHHHHhhhccccC-CCChhhhhhhcC---CCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccch
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYP-VEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~-~~~~~~~~~~~~---~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l 463 (719)
...+|++++|.+..++.|.+++... ...+..+...+. .+++++||+||||||||++|+++|++++.+++.++++++
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 3457999999999999998876531 111122222232 245789999999999999999999999999999999887
Q ss_pred hhhccCCch-------hhHHHHHHHH-----HhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCC
Q 005014 464 LTMWFGESE-------ANVREIFDKA-----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK 531 (719)
Q Consensus 464 ~~~~~g~se-------~~i~~~f~~a-----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 531 (719)
.+.+..... ..+..+|..+ ....++||||||+|.+.... ...++.|+..++.. ..
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----------~~~l~~L~~~l~~~--~~ 180 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----------RGGVGQLAQFCRKT--ST 180 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----------TTHHHHHHHHHHHC--SS
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----------HHHHHHHHHHHHhc--CC
Confidence 654322111 1123344433 23567999999999986421 11245555555432 23
Q ss_pred cEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHH
Q 005014 532 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 532 ~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A 610 (719)
.+++|+++.....+. .+. |+...+.|++|+.+++..+++..+.+.++. .+..+..+++.+. +|++.+++..
T Consensus 181 ~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~----GdiR~~i~~L 252 (516)
T 1sxj_A 181 PLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTR----GDIRQVINLL 252 (516)
T ss_dssp CEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTT----TCHHHHHHHH
T ss_pred CEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CcHHHHHHHH
Confidence 355555444434443 344 455699999999999999998887554332 2223677777764 3555555444
Q ss_pred H
Q 005014 611 C 611 (719)
Q Consensus 611 ~ 611 (719)
.
T Consensus 253 ~ 253 (516)
T 1sxj_A 253 S 253 (516)
T ss_dssp T
T ss_pred H
Confidence 3
No 88
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=2.7e-16 Score=177.61 Aligned_cols=167 Identities=25% Similarity=0.377 Sum_probs=117.2
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh----
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS---- 192 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~---- 192 (719)
.-.+++.|+++.++.+.+.+.+...+. .+ ++.+++|+|||||||||+++++|+.++.++..+++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 345679999999999877665422111 12 5778999999999999999999999999999998865432
Q ss_pred -----hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCC-------------
Q 005014 193 -----KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR------------- 254 (719)
Q Consensus 193 -----~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~------------- 254 (719)
.+.|.....+...|..+....| ++||||+|.+....... ....|+..++.....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~-------~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGD-------PSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccC-------HHHHHHHHHhhhhcceeecccCCeeecc
Confidence 3445555566667777655555 99999999998654211 234566666543211
Q ss_pred CcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 255 AHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 255 ~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
.++++|+|||.++.++++|++ || ..|.++.|+.+++..|++.++
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTH
T ss_pred cceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHH
Confidence 468899999999999999998 88 478999999999999998764
No 89
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.64 E-value=2.6e-16 Score=152.55 Aligned_cols=159 Identities=21% Similarity=0.373 Sum_probs=115.2
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEE
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 458 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v 458 (719)
...|+++.|.++..+.+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 34577888888877777665432 234679999999999999999999986 6788999
Q ss_pred eccchh--hhccCCchhhHHHHHHHHH-hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEE
Q 005014 459 KGPELL--TMWFGESEANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 535 (719)
Q Consensus 459 ~~~~l~--~~~~g~se~~i~~~f~~a~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~v 535 (719)
++.++. ..+.|.....+..+++.+. ...+++|||||+|.+...+... . .......+..+ ++ ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~-~~~~~~~l~~~---~~----~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--G-AMDAGNMLKPA---LA----RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHH---HH----TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc--c-hHHHHHHHHHh---hc----cCCeEE
Confidence 888776 3455666677888887654 4558899999999997654321 1 11222333333 32 245778
Q ss_pred EEecCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHH
Q 005014 536 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIF 573 (719)
Q Consensus 536 i~atn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il 573 (719)
|++||.++ .+|+++++ ||+ .+++++|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888876 78999999 998 6999999999998876
No 90
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.63 E-value=5.3e-15 Score=159.55 Aligned_cols=217 Identities=23% Similarity=0.309 Sum_probs=146.1
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eEEEEechhhhhhc
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSKL 194 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~--~~i~v~~~~l~~~~ 194 (719)
.+|+++.|.+..++.+..+... +. -+..++.++||+||||||||++|++++..++. +++.+++..+...+
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~-~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEM-IR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHH-HH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cchhhccChHHHHHHHHHHHHH-HH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 3499999999998887655543 11 13345679999999999999999999999975 67788876533222
Q ss_pred c-------------------------------------------------cchHHHHHHHHHHHHh-----c----CCcE
Q 005014 195 A-------------------------------------------------GESESNLRKAFEEAEK-----N----APSI 216 (719)
Q Consensus 195 ~-------------------------------------------------g~~~~~l~~vf~~a~~-----~----~p~i 216 (719)
. +.....++..+..+.. . .|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 1 1223344555544332 1 1679
Q ss_pred EEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEec-----------CCCCCCCHHhhccCCCceEEEe
Q 005014 217 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT-----------NRPNSIDPALRRFGRFDREIDI 285 (719)
Q Consensus 217 L~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~at-----------n~~~~ld~al~r~~Rf~~~i~i 285 (719)
|||||++.+.. .....|+..++... ..++++++. +.+..+++++++ ||.. +.+
T Consensus 193 l~IDEi~~l~~-----------~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~ 256 (368)
T 3uk6_A 193 LFIDEVHMLDI-----------ESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VST 256 (368)
T ss_dssp EEEESGGGSBH-----------HHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEE
T ss_pred EEEhhccccCh-----------HHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEe
Confidence 99999998842 23456666665432 245555554 346789999998 8865 899
Q ss_pred CCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccc
Q 005014 286 GVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVT 364 (719)
Q Consensus 286 ~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 364 (719)
++|+.+++.++++..+...... .+..+..++..+.+...+.+..++..+...+.... ...++
T Consensus 257 ~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~-----------------~~~It 319 (368)
T 3uk6_A 257 TPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK-----------------GTEVQ 319 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT-----------------CSSBC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCC
Confidence 9999999999998776542221 33347888888875567788888888776654432 23466
Q ss_pred hHHHHHhhcc
Q 005014 365 DEHFKTALGT 374 (719)
Q Consensus 365 ~~~~~~al~~ 374 (719)
.+++..++..
T Consensus 320 ~~~v~~a~~~ 329 (368)
T 3uk6_A 320 VDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6677766654
No 91
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.63 E-value=1.1e-15 Score=162.43 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=107.5
Q ss_pred cccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEecc------chhh
Q 005014 392 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLT 465 (719)
Q Consensus 392 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~------~l~~ 465 (719)
++++.|.+.+++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++. ++.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 35677888888777654431 24799999999999999999999999999988873 2222
Q ss_pred hccCC-chhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC---------CCCCcEEE
Q 005014 466 MWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM---------SAKKTVFI 535 (719)
Q Consensus 466 ~~~g~-se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~---------~~~~~v~v 535 (719)
...-. ..... .|. ......+|+||||++.+. ....+.|+..|+.. ....+++|
T Consensus 91 ~~~~~~~~~~~--~~~-~g~l~~~vl~iDEi~~~~--------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 91 TMIYNQHKGNF--EVK-KGPVFSNFILADEVNRSP--------------AKVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEETTTTEE--EEE-ECTTCSSEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred ceeecCCCCce--Eec-cCcccccEEEEEccccCC--------------HHHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 11100 00000 000 000013699999999863 34566677766642 12345788
Q ss_pred EEecCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccC
Q 005014 536 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 580 (719)
Q Consensus 536 i~atn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~ 580 (719)
|+|+|..+ .+++++++ ||+.++++++|+.+++.+|++..+...
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccC
Confidence 88888544 38999999 999899999999999999999988653
No 92
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.63 E-value=1e-15 Score=170.07 Aligned_cols=185 Identities=23% Similarity=0.339 Sum_probs=130.1
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEE
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 458 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v 458 (719)
.-+++++.|.+...+.+...+.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34678899999888877765532 234579999999999999999999996 6788888
Q ss_pred eccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEe
Q 005014 459 KGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 538 (719)
Q Consensus 459 ~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~a 538 (719)
+++ ++|.|+.+..++.+|..+....++|+||| +. ....+.|+..| ..+.+.+|+|
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---------~~---------~~a~~~L~~~L----~~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID---------AA---------IDASNILKPSL----ARGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC---------C-----------------CCCT----TSSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe---------Cc---------hhHHHHHHHhh----cCCCEEEEec
Confidence 877 77899999999999999998889999999 10 01223333333 3557899999
Q ss_pred cCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCC----CC-CccCHHHHHHHccCCC-----HHHH
Q 005014 539 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP----VS-KDVDLRALAKYTQGFS-----GADI 603 (719)
Q Consensus 539 tn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~----~~-~~~d~~~la~~~~~~s-----g~di 603 (719)
||.++ .+|+++.| ||. .|.|++|+.+++..|++.++.+.. +. .+..+..++..+.+|. +...
T Consensus 298 t~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~a 374 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (468)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHH
Confidence 99987 69999999 998 599999999999999998886632 21 2233556666655443 4466
Q ss_pred HHHHHHHHHHH
Q 005014 604 TEICQRACKYA 614 (719)
Q Consensus 604 ~~~~~~A~~~a 614 (719)
..++.+|+..+
T Consensus 375 i~ll~~a~~~~ 385 (468)
T 3pxg_A 375 IDLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77887777544
No 93
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.63 E-value=2.1e-15 Score=152.04 Aligned_cols=205 Identities=11% Similarity=0.150 Sum_probs=136.5
Q ss_pred CCccccccc---cHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC---CeEEEEeccc
Q 005014 389 NVNWEDIGG---LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPE 462 (719)
Q Consensus 389 ~~~~~~i~g---~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~---~~~i~v~~~~ 462 (719)
..+|+++.+ ...+.+.+...+.. ..+.+++|+||||||||++|++++..+. .+++.+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 356777665 23444545444321 1346799999999999999999998874 6788888887
Q ss_pred hhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcE-EEEEecCC
Q 005014 463 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV-FIIGATNR 541 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v-~vi~atn~ 541 (719)
+...+.. .++.. ..+.+|||||++.+... ....+.|+..++.......+ +|+++++.
T Consensus 91 ~~~~~~~--------~~~~~--~~~~vliiDe~~~~~~~------------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTA--------LLEGL--EQFDLICIDDVDAVAGH------------PLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGG--------GGTTG--GGSSEEEEETGGGGTTC------------HHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred HHHHHHH--------HHHhc--cCCCEEEEeccccccCC------------HHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 7554311 11111 34679999999997431 11233344444433223334 55555555
Q ss_pred CC---CCCcccCCCCCcc--eEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 005014 542 PD---IIDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAI 615 (719)
Q Consensus 542 ~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~ 615 (719)
++ .+++++.+ ||. .++++++|+.+++.++++.+++..++. .+..++.+++.+. -+.+++.++++.|...|.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-g~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMA-RDLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHH
Confidence 54 45678887 886 899999999999999999999765543 2233566777765 478999999998887764
Q ss_pred HHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHh
Q 005014 616 RENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMK 657 (719)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~ 657 (719)
.+. ..|+.+++.++++
T Consensus 226 ~~~--------------------------~~It~~~v~~~l~ 241 (242)
T 3bos_A 226 VHQ--------------------------RKLTIPFVKEMLR 241 (242)
T ss_dssp HHT--------------------------CCCCHHHHHHHHT
T ss_pred HhC--------------------------CCCcHHHHHHHhh
Confidence 432 2589999988875
No 94
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=4.1e-15 Score=161.25 Aligned_cols=195 Identities=24% Similarity=0.277 Sum_probs=135.3
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-----------CCeEEEEecc
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----------QANFISVKGP 461 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-----------~~~~i~v~~~ 461 (719)
+++.|.+...+.+...+.... .-..+++++|+||||||||++|+++++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV---------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH---------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 678888888887776553211 11334579999999999999999999987 8899999976
Q ss_pred chh-h----------h-------ccCCch-hhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHH-HHHHH
Q 005014 462 ELL-T----------M-------WFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRV-LNQLL 521 (719)
Q Consensus 462 ~l~-~----------~-------~~g~se-~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~-~~~ll 521 (719)
+.. + . +.|.+. ..+..++..+.... .+|||||+|.+...+. ..+ +..|+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~----------~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG----------GDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT----------SHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC----------CceeHHHHh
Confidence 543 1 1 112222 33455555554444 4999999999865321 123 44444
Q ss_pred HHhcCCCCCCcEEEEEecCCC---CCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhcc-C-C-CCCccCHHHHHHHc
Q 005014 522 TEMDGMSAKKTVFIIGATNRP---DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-S-P-VSKDVDLRALAKYT 595 (719)
Q Consensus 522 ~~ld~~~~~~~v~vi~atn~~---~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-~-~-~~~~~d~~~la~~~ 595 (719)
... .++.+|++||.+ +.+++++.+ ||...++|++|+.+++..|++..++. . . ...+..++.+++.+
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence 332 678999999987 678999988 88889999999999999999998864 1 1 11233366777777
Q ss_pred cCC--CHHHHHHHHHHHHHHHH
Q 005014 596 QGF--SGADITEICQRACKYAI 615 (719)
Q Consensus 596 ~~~--sg~di~~~~~~A~~~a~ 615 (719)
.+. +.+.+.++|+.|...|.
T Consensus 232 ~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 232 AKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHHHHHHHHHHHHhc
Confidence 633 34666778888876553
No 95
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.63 E-value=4.6e-15 Score=149.39 Aligned_cols=185 Identities=22% Similarity=0.328 Sum_probs=133.5
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
...|+++.|.+...+.|...+.. + ..+..++|+||||||||++++++++.....
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 34578889999988888776542 1 223469999999999999999999887432
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHH----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.+.... ......++.+++.+. ...+.+|||||+|.+. ....+.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~~~~~~l 146 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNAL 146 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------HHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------HHHHHHH
Confidence 22222211 012234555665543 2347899999999862 3456777
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~s 599 (719)
+..++.. ..++.+|++||.++.+++++.+ |+ ..+++++|+.++..++++.++.+.+.. .+..+..+++.+.| +
T Consensus 147 ~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~ 220 (250)
T 1njg_A 147 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 220 (250)
T ss_dssp HHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-C
T ss_pred HHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-C
Confidence 8887754 3468889999999999999988 76 689999999999999999998765433 22346778888866 8
Q ss_pred HHHHHHHHHHHH
Q 005014 600 GADITEICQRAC 611 (719)
Q Consensus 600 g~di~~~~~~A~ 611 (719)
.+.+.++++.|.
T Consensus 221 ~~~~~~~~~~~~ 232 (250)
T 1njg_A 221 LRDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888774
No 96
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.63 E-value=3.2e-14 Score=151.23 Aligned_cols=195 Identities=24% Similarity=0.341 Sum_probs=135.8
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccC
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 469 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 469 (719)
.++++..|.+.+++.+...+... .. .-.++..++|+||||||||||++++|++++.++...+++.+.
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~-------~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~----- 88 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAA-------KM-RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV----- 88 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHH-------HH-HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC-----
T ss_pred ccHHHccCcHHHHHHHHHHHHHH-------Hh-cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc-----
Confidence 36777888888877776554321 00 112346699999999999999999999999888877775442
Q ss_pred CchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC----------------CCCcE
Q 005014 470 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTV 533 (719)
Q Consensus 470 ~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~v 533 (719)
....+..++... ...+|+|+||++.+.. .+.+.|+..+.... ....+
T Consensus 89 -~~~~l~~~~~~~--~~~~v~~iDE~~~l~~--------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 89 -KQGDMAAILTSL--ERGDVLFIDEIHRLNK--------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -SHHHHHHHHHHC--CTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCCCC---------------CCC
T ss_pred -CHHHHHHHHHHc--cCCCEEEEcchhhcCH--------------HHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 123344444332 3457999999998743 12233333333221 01246
Q ss_pred EEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCCHHHHHHHHHHHHH
Q 005014 534 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACK 612 (719)
Q Consensus 534 ~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~d~~~la~~~~~~sg~di~~~~~~A~~ 612 (719)
.++++||++..|++++++ ||...+.+++|+.+++.+|++...+..++..+ ..+..+++.+.| +.+.+.++++.+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 778899999999999998 99988999999999999999998876554422 235667777664 66888889988877
Q ss_pred HHHHH
Q 005014 613 YAIRE 617 (719)
Q Consensus 613 ~a~~~ 617 (719)
.|..+
T Consensus 229 ~a~~~ 233 (334)
T 1in4_A 229 MLTVV 233 (334)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 76543
No 97
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=1.4e-14 Score=156.71 Aligned_cols=204 Identities=20% Similarity=0.255 Sum_probs=140.4
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh------CCeEEEEeccchh
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPELL 464 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~------~~~~i~v~~~~l~ 464 (719)
..+++.|.+...+.|.+.+..... -..+..++|+||||||||+|++++++.+ +..++.+++....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 346788888888888776643111 1334579999999999999999999988 7889999876432
Q ss_pred h------h----------ccCCchhh-HHHHHHHHHhCC-CEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcC
Q 005014 465 T------M----------WFGESEAN-VREIFDKARQSA-PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 526 (719)
Q Consensus 465 ~------~----------~~g~se~~-i~~~f~~a~~~~-p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~ 526 (719)
+ . ..|.+... ...+++...... |++|||||++.+....+ ..++..++..++.
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~ 158 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSE 158 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchhh
Confidence 1 1 11222222 444555554433 89999999999875321 2357778887776
Q ss_pred CCCCCcEEEEEecCCC---CCCCcccCCCCCcc-eEEEeCCCCHHHHHHHHHHHhccCC---CCCccCHHHHHHHccC--
Q 005014 527 MSAKKTVFIIGATNRP---DIIDPALLRPGRLD-QLIYIPLPDEESRLQIFKACLRKSP---VSKDVDLRALAKYTQG-- 597 (719)
Q Consensus 527 ~~~~~~v~vi~atn~~---~~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~d~~~la~~~~~-- 597 (719)
. ...++.+|++||.+ +.+++++.+ ||. ..+++++++.++..+|++..+.... ...+..+..+++.+..
T Consensus 159 ~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 159 V-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp C-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred c-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 5 34578889999987 467888887 775 5899999999999999998875321 1122235556666652
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 005014 598 FSGADITEICQRACKYAIR 616 (719)
Q Consensus 598 ~sg~di~~~~~~A~~~a~~ 616 (719)
-+.+.+.++|+.|...|..
T Consensus 236 G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 236 GDARRALDLLRVSGEIAER 254 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3567777889888776654
No 98
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.61 E-value=2.2e-15 Score=187.28 Aligned_cols=212 Identities=13% Similarity=0.204 Sum_probs=119.2
Q ss_pred CCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccCCCccccccccH
Q 005014 320 HGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLE 399 (719)
Q Consensus 320 ~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~ 399 (719)
.+|.+.++.+ +++++...+++..+. ...+.........++ .++....|+.+++...+.|+++|++...+.
T Consensus 615 ~~~~~~~l~q-g~e~~~~~l~~~p~~----~~ei~~~i~~~~~Vt-----~a~~~~~ps~L~e~~~~~~~v~~~~~~~i~ 684 (2050)
T 3cmu_A 615 YSYKGEKIGQ-GKANATAWLKDNPET----AKEIEKKVRELLLSN-----PNSTTGSTGSMGHTTGAMSAIDENKQKALA 684 (2050)
T ss_dssp EEETTEEEEE-SHHHHHHHHTTCHHH----HHHHHHHHHHHHCSS-----CCC----------------CCSTTHHHHHH
T ss_pred ecccCCchHh-hHHHHHHHHHhChHH----HHHHHHHHHHhcccc-----hhcccCCHHHHHhhhccccCCcHHHHHHHH
Confidence 3455555433 555666555443221 012222222233333 455666788899989999999998633344
Q ss_pred HHHHHhh-----------------hccccCCCChhhhhhh---cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEE
Q 005014 400 NVKRELQ-----------------ETVQYPVEHPEKFEKF---GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFI 456 (719)
Q Consensus 400 ~~k~~l~-----------------~~i~~~~~~~~~~~~~---~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i 456 (719)
.+.+.+. +...++...+++-.-+ |+.+...++|+|+||+|||+||..+|..+ +.+++
T Consensus 685 ~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~Vl 764 (2050)
T 3cmu_A 685 AALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 764 (2050)
T ss_dssp HHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEE
Confidence 4443332 2223344455555555 47777779999999999999999999876 34688
Q ss_pred EEeccchhhhc----cC--------CchhhHHHHHHHHHh----CCCEEEEEeccchhhc-cc--CCCCCCCCCchHHHH
Q 005014 457 SVKGPELLTMW----FG--------ESEANVREIFDKARQ----SAPCVLFFDELDSIAT-QR--GSSVGDAGGAADRVL 517 (719)
Q Consensus 457 ~v~~~~l~~~~----~g--------~se~~i~~~f~~a~~----~~p~il~iDEid~l~~-~r--~~~~~~~~~~~~~~~ 517 (719)
+++..+....+ .| .++.++..++..++. ..|+++|||.++.+.. .+ +...+-.++...|.+
T Consensus 765 yiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Rei 844 (2050)
T 3cmu_A 765 FIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM 844 (2050)
T ss_dssp EECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHH
T ss_pred EEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHH
Confidence 88887654433 33 234456677776655 6789999999999975 22 111011123446778
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCC
Q 005014 518 NQLLTEMDGMSAKKTVFIIGATNR 541 (719)
Q Consensus 518 ~~ll~~ld~~~~~~~v~vi~atn~ 541 (719)
++++..|..+....++.||++...
T Consensus 845 s~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 845 SQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCEEEEeccc
Confidence 999999988877777777776643
No 99
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.61 E-value=2.1e-14 Score=152.98 Aligned_cols=193 Identities=21% Similarity=0.292 Sum_probs=138.3
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
++.+.+|++++|.+..++.+...+...... -.+..++||+||||||||++|++++..++.+++.+++..+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 345558999999999999998888653211 13456799999999999999999999999999999987653
Q ss_pred hcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC----------------CCc
Q 005014 193 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RAH 256 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~----------------~~~ 256 (719)
....+...+.. ...+++|||||++.+.. .....|+..++.... .++
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 12233333332 34678999999998852 233455555554321 124
Q ss_pred EEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHH
Q 005014 257 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 335 (719)
Q Consensus 257 vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 335 (719)
+.+|++||....+++++++ ||+..+.+++|+.+++..+++......... ....+..++..+.|.. +.+..++..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~~ 231 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTP-RIALRLLKRVR 231 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH-HHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH-HHHHHHHHHHH
Confidence 7899999999999999998 899999999999999999998776644332 2334667777666653 44455555443
No 100
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.61 E-value=2e-15 Score=143.85 Aligned_cols=104 Identities=77% Similarity=1.412 Sum_probs=91.0
Q ss_pred CCHHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccCCcccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEE
Q 005014 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEF 80 (719)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f 80 (719)
||+.+|+|+|+++||.|+|+++.+++.|++|+|+|..+++.++.++.+..||++||.+..+||.+||+|.+...++.+.|
T Consensus 84 id~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f 163 (187)
T 3tiw_A 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEF 163 (187)
T ss_dssp ECHHHHHHTTCCTTCEEEEEECTTCEECSEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEE
T ss_pred eCHHHHhhcCCCCCCEEEEEECCCCCCceEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEE
Confidence 68999999999999999999976789999999999987766666777889999999876799999999999887889999
Q ss_pred EEEEecCCceEEECCCceEEecCC
Q 005014 81 KVIETDPPEYCVVAPDTEIFCEGE 104 (719)
Q Consensus 81 ~v~~~~p~~~~~~~~~t~~~~~~~ 104 (719)
+|++++|.++|+|+++|.|.|+++
T Consensus 164 ~Vv~t~P~~~v~V~~~T~I~~eg~ 187 (187)
T 3tiw_A 164 KVVETDPSPYCIVAPDTVIHCEGE 187 (187)
T ss_dssp EEEEEESSSEEECCTTCEEECCC-
T ss_pred EEEEecCCCCEEECCCcEEEecCC
Confidence 999999999999999999998763
No 101
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=2.2e-15 Score=179.72 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=132.1
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEE
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 458 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v 458 (719)
...++++.|.+...+.+.+.+.. ...++++|+||||||||++|+++|..+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 34678888888777776655421 234579999999999999999999987 7889999
Q ss_pred eccchh--hhccCCchhhHHHHHHHHHhC-CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEE
Q 005014 459 KGPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 535 (719)
Q Consensus 459 ~~~~l~--~~~~g~se~~i~~~f~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~v 535 (719)
+++.+. .+|.|+.+..++.+|..+... .|+||||||++.+.+.+... ....+.+.|...++ ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~------g~~~~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE------GAVDAGNMLKPALA----RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc------chHHHHHHHHHHHh----CCCeEE
Confidence 998887 678899999999999999875 68999999999998654321 11223344444443 245778
Q ss_pred EEecCCCC----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccC----CCC-CccCHHHHHHHc-----cCCCHH
Q 005014 536 IGATNRPD----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS----PVS-KDVDLRALAKYT-----QGFSGA 601 (719)
Q Consensus 536 i~atn~~~----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~d~~~la~~~-----~~~sg~ 601 (719)
|++||.++ .+|+++.| ||+. |+|++|+.+++..||+.++.+. .+. .+..+..+++.+ +.|.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 99999875 48999999 9985 9999999999999998877543 121 122344555544 345567
Q ss_pred HHHHHHHHHHHHHH
Q 005014 602 DITEICQRACKYAI 615 (719)
Q Consensus 602 di~~~~~~A~~~a~ 615 (719)
....++.+|+..+.
T Consensus 380 kai~lldea~a~~~ 393 (854)
T 1qvr_A 380 KAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766554
No 102
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.60 E-value=1.5e-15 Score=179.27 Aligned_cols=186 Identities=22% Similarity=0.321 Sum_probs=130.9
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEE
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 458 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v 458 (719)
.-.++++.|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ +..++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 34678899999988888766532 334569999999999999999999996 7778877
Q ss_pred eccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEe
Q 005014 459 KGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 538 (719)
Q Consensus 459 ~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~a 538 (719)
++ ..+|.|+.+..++.+|..+....++||||| +. ....+.|+..| ....+.+|+|
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---------~~---------~~~~~~L~~~l----~~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID---------AA---------IDASNILKPSL----ARGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC---------C-----------------CCCT----TSSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc---------Cc---------hhHHHHHHHHH----hcCCEEEEeC
Confidence 77 567899999999999999999999999999 10 11223333333 3567899999
Q ss_pred cCCCC-----CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-----ccCHHHHHHHc-----cCCCHHHH
Q 005014 539 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-----DVDLRALAKYT-----QGFSGADI 603 (719)
Q Consensus 539 tn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-----~~d~~~la~~~-----~~~sg~di 603 (719)
||..+ .+|+++.| ||. .|+|++|+.+++..||+.++.+..... +..+..++..+ +++.++..
T Consensus 298 t~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~a 374 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (758)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHH
Confidence 99988 79999999 995 699999999999999998876642222 22244455543 35566777
Q ss_pred HHHHHHHHHHHH
Q 005014 604 TEICQRACKYAI 615 (719)
Q Consensus 604 ~~~~~~A~~~a~ 615 (719)
..++.+|+..+.
T Consensus 375 i~ll~~a~~~~~ 386 (758)
T 3pxi_A 375 IDLIDEAGSKVR 386 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778887766543
No 103
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.59 E-value=1.7e-14 Score=155.31 Aligned_cols=219 Identities=23% Similarity=0.316 Sum_probs=145.0
Q ss_pred ccchHHHHHHHHHHHHcccCChhhHh-hhCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh-cccch
Q 005014 122 VGGVRKQMAQIRELVELPLRHPQLFK-SIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK-LAGES 198 (719)
Q Consensus 122 i~G~~~~~~~l~~~~~~~l~~~~~~~-~l~~-~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~-~~g~~ 198 (719)
|.|.+.+++.+...+...+....... .... .++.++||+||||||||++|+++|..++.+++.+++.++... +.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 79999999999888753222111000 0011 256789999999999999999999999999999999988643 55554
Q ss_pred -HHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhccc------------------
Q 005014 199 -ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLK------------------ 252 (719)
Q Consensus 199 -~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~L~~~l~~~~------------------ 252 (719)
...+..+|..+ ....+++|||||+|.+.+.+.... +....++...|+..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 45566777664 344578999999999987754322 2223457888888888421
Q ss_pred -CCCcEEEEEecCCC----------CC-----------------------------------CCHHhhccCCCceEEEeC
Q 005014 253 -SRAHVIVIGATNRP----------NS-----------------------------------IDPALRRFGRFDREIDIG 286 (719)
Q Consensus 253 -~~~~vivI~atn~~----------~~-----------------------------------ld~al~r~~Rf~~~i~i~ 286 (719)
...++++|++++.. .. +.|+|.. ||+..+.++
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 12234455554431 11 5677775 999999999
Q ss_pred CCChHHHHHHHHH----Hh-------c--CCCCC-CcccHHHHHH--HhCCCccccHHHHHHHHHHHHHHhh
Q 005014 287 VPDEVGRLEVLRI----HT-------K--NMKLS-DDVDLERIAK--DTHGYVGADLAALCTEAALQCIREK 342 (719)
Q Consensus 287 ~P~~~~R~~il~~----~~-------~--~~~l~-~~~~l~~la~--~t~g~~~~dl~~l~~~a~~~~~~~~ 342 (719)
+|+.+++.+|+.. .. . ...+. .+..+..++. ....+..+.+..++.++....+.+.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999998874 11 1 11111 2223556664 3344556788888888776665543
No 104
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.59 E-value=8e-15 Score=155.33 Aligned_cols=184 Identities=20% Similarity=0.189 Sum_probs=129.4
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhcc
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 468 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 468 (719)
+.+|+++.|.+.+++.|...+.. -..+..+|++||||||||++|+++|+.++.+++.+++++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 45789999999999988877651 13345688999999999999999999999999999987631
Q ss_pred CCchhhHHHHHHHHHhC-----CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 005014 469 GESEANVREIFDKARQS-----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 543 (719)
Q Consensus 469 g~se~~i~~~f~~a~~~-----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~ 543 (719)
...++..+...... .+.|+||||+|.+.+ ....+.|+..++.. ..++.+|++||.++
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------~~~~~~L~~~le~~--~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------AESQRHLRSFMEAY--SSNCSIIITANNID 147 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------HHHHHHHHHHHHHH--GGGCEEEEEESSGG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------HHHHHHHHHHHHhC--CCCcEEEEEeCCcc
Confidence 34455544443222 568999999999841 23455666666543 24578888999999
Q ss_pred CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhc-------cCCCCC-c-cCHHHHHHHccCCCHHHHHHHHHHH
Q 005014 544 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR-------KSPVSK-D-VDLRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 544 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~-------~~~~~~-~-~d~~~la~~~~~~sg~di~~~~~~A 610 (719)
.+++++.+ ||. ++.|++|+.++|..|++.++. +.++.- + ..+..+++.+.| +.+++.+.++.+
T Consensus 148 ~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~ 219 (324)
T 3u61_B 148 GIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSY 219 (324)
T ss_dssp GSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHH
T ss_pred ccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999998 995 799999999998777655432 223321 2 335566666543 334444444444
No 105
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=5e-14 Score=152.82 Aligned_cols=202 Identities=14% Similarity=0.143 Sum_probs=138.4
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCc--ceeeecCCCCchhHHHHHHHHHh----CCeEEEEeccchh
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK--GVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELL 464 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~--gill~GppGtGKT~la~~la~~~----~~~~i~v~~~~l~ 464 (719)
..+++.|.+...+.|...+.... . + ..+. .++|+||||||||++++++++.+ +..++.+++....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~------~--~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWL------R--N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHH------H--S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHH------c--C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 34678888888887776654211 0 1 2223 79999999999999999999998 5788999876543
Q ss_pred hh---------cc-------CCchhh-HHHHHHHHH-hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcC
Q 005014 465 TM---------WF-------GESEAN-VREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 526 (719)
Q Consensus 465 ~~---------~~-------g~se~~-i~~~f~~a~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~ 526 (719)
+. .+ |.+... ...+..... ...|.+|||||++.+. ...+..|+..++.
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLGQE 151 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHHHh
Confidence 21 01 112222 222222222 2458899999999871 3467777777765
Q ss_pred CCC--CCcEEEEEecCCC---CCCCcccCCCCCcce-EEEeCCCCHHHHHHHHHHHhccC---CCCCccCHHHHHHHcc-
Q 005014 527 MSA--KKTVFIIGATNRP---DIIDPALLRPGRLDQ-LIYIPLPDEESRLQIFKACLRKS---PVSKDVDLRALAKYTQ- 596 (719)
Q Consensus 527 ~~~--~~~v~vi~atn~~---~~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~~~~~---~~~~~~d~~~la~~~~- 596 (719)
... ..++.+|++||.+ +.+++.+.+ ||.. .++|++++.++...+++..+... ..-.+..++.+++.+.
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA 229 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence 432 1478899999988 678888887 8875 89999999999999999988641 1222334667777774
Q ss_pred -------CCCHHHHHHHHHHHHHHHHHH
Q 005014 597 -------GFSGADITEICQRACKYAIRE 617 (719)
Q Consensus 597 -------~~sg~di~~~~~~A~~~a~~~ 617 (719)
+-..+.+.++|+.|...|..+
T Consensus 230 ~~~~~~~~G~~r~~~~~l~~a~~~a~~~ 257 (389)
T 1fnn_A 230 QTPLDTNRGDARLAIDILYRSAYAAQQN 257 (389)
T ss_dssp SSTTCTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 235678889999988877553
No 106
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.57 E-value=7.4e-15 Score=142.24 Aligned_cols=159 Identities=23% Similarity=0.389 Sum_probs=114.0
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 185 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v 185 (719)
...|+++.|.+++++++.+.+.. ..+.+++|+||||||||+++++++..+ +..++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 44688899999988888776532 235689999999999999999999986 6788889
Q ss_pred echhhh--hhcccchHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEe
Q 005014 186 NGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 262 (719)
Q Consensus 186 ~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~a 262 (719)
++..+. ..+.+.....+..+++.... ..+++|+|||++.+.+....... ..+...+...++ ..++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~l~~~~~----~~~~~~i~~ 157 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALA----RGELHCVGA 157 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHH----TTSCCEEEE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch---HHHHHHHHHhhc----cCCeEEEEe
Confidence 888776 23445566677777776544 55789999999999755321110 011222333332 345677788
Q ss_pred cCCCC-----CCCHHhhccCCCceEEEeCCCChHHHHHHH
Q 005014 263 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVL 297 (719)
Q Consensus 263 tn~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il 297 (719)
++.+. .+++++++ ||. .+.++.|+.+++.+|+
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88765 78999998 887 6999999999998775
No 107
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.55 E-value=2.8e-15 Score=144.66 Aligned_cols=151 Identities=21% Similarity=0.339 Sum_probs=109.4
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh----------CCeEEEEe
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 459 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~----------~~~~i~v~ 459 (719)
..|+++.|.+...+.+.+.+.. ....+++|+||||||||++|++++..+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 3577788888777776655432 234579999999999999999999987 67888888
Q ss_pred ccchhh--hccCCchhhHHHHHHHHHhC-CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEE
Q 005014 460 GPELLT--MWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 536 (719)
Q Consensus 460 ~~~l~~--~~~g~se~~i~~~f~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 536 (719)
+..+.. .+.|.....+..++..+... .|++|||||++.+...+... ... ..+.+.|...++. .++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~---~~~~~~l~~~~~~----~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGA---LDAGNILKPMLAR----GELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTS---CCTHHHHHHHHHT----TCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccc---hHHHHHHHHHHhc----CCeeEE
Confidence 777653 34555566778888777665 67899999999997654311 111 1233444444442 457889
Q ss_pred EecCCCC-----CCCcccCCCCCcceEEEeCCCC
Q 005014 537 GATNRPD-----IIDPALLRPGRLDQLIYIPLPD 565 (719)
Q Consensus 537 ~atn~~~-----~ld~allrpgRf~~~i~~~~p~ 565 (719)
++||.++ .+|+++++ ||+ .+++++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 9999875 68999999 999 59999986
No 108
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.55 E-value=1.1e-14 Score=161.55 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=116.2
Q ss_pred ccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC--eEEEEec-----cchhhhc
Q 005014 395 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG-----PELLTMW 467 (719)
Q Consensus 395 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~--~~i~v~~-----~~l~~~~ 467 (719)
+.|.+++++.+...+. ...++||+||||||||++|+++|..++. +|..+.+ +++.+.+
T Consensus 24 ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 24 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp CSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 5677777766654332 1247999999999999999999998843 5555544 3333333
Q ss_pred cCCchhhHHHHHHHHHhC---CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC--------CCCcEEEE
Q 005014 468 FGESEANVREIFDKARQS---APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFII 536 (719)
Q Consensus 468 ~g~se~~i~~~f~~a~~~---~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi 536 (719)
.+...... ..|..+... .++|+|||||+.+ ...+.+.|+..|+... .....++|
T Consensus 89 ~~~~~~~~-g~~~~~~~g~l~~~~IL~IDEI~r~--------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 89 SIQALKDE-GRYERLTSGYLPEAEIVFLDEIWKA--------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGC--------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred cHHHHhhc-hhHHhhhccCCCcceeeeHHhHhhh--------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 32221111 223222222 4679999999764 2467788888886421 11123567
Q ss_pred EecCCC-C--CCCcccCCCCCcceEEEeCCCCH-HHHHHHHHHHhccC-------------------------CCCCccC
Q 005014 537 GATNRP-D--IIDPALLRPGRLDQLIYIPLPDE-ESRLQIFKACLRKS-------------------------PVSKDVD 587 (719)
Q Consensus 537 ~atn~~-~--~ld~allrpgRf~~~i~~~~p~~-~~r~~Il~~~~~~~-------------------------~~~~~~d 587 (719)
+|||.+ + .+.+++++ ||...+++|+|+. +++..|++...... .++. .-
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d-~v 230 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPD-HV 230 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCH-HH
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCch-HH
Confidence 788863 2 23458998 9999999999986 77889997654311 1110 01
Q ss_pred HHHHHHHc---------cCCCHHHHHHHHHHHHHHHHHHH
Q 005014 588 LRALAKYT---------QGFSGADITEICQRACKYAIREN 618 (719)
Q Consensus 588 ~~~la~~~---------~~~sg~di~~~~~~A~~~a~~~~ 618 (719)
++.+++.. .|.|.+.+..+++.|...|..++
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 23333332 36788888888877766665543
No 109
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.55 E-value=8.4e-14 Score=147.30 Aligned_cols=191 Identities=23% Similarity=0.341 Sum_probs=133.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
+.+.+|+++.|.+..++.+.+.+..... . -..+.++||+||||||||++|++++..++.+++.+++..+..
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKA-------R-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHH-------H-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHc-------c-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 4555889999999999998887754211 0 124468999999999999999999999999999999876522
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc----------------CCCcE
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHV 257 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~----------------~~~~v 257 (719)
...+...|... ...+++|||||++.+... ....|+..++... ....+
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 12222222221 245789999999987521 2234445554321 11357
Q ss_pred EEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHH
Q 005014 258 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 333 (719)
Q Consensus 258 ivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 333 (719)
.+|++||.+..+++++.+ ||...+.+++|+.+++..++..+....... ....+..++..+.|+. +.+..++..
T Consensus 140 ~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~ 213 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM-RVAKRLFRR 213 (324)
T ss_dssp EEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH-HHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH-HHHHHHHHH
Confidence 889999999999998886 898899999999999999998877654332 2334677778777654 344444443
No 110
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.55 E-value=6.2e-14 Score=174.34 Aligned_cols=117 Identities=20% Similarity=0.275 Sum_probs=84.8
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccch----hhhccC------------CchhhHHHHHHHHH
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL----LTMWFG------------ESEANVREIFDKAR 483 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l----~~~~~g------------~se~~i~~~f~~a~ 483 (719)
|+.++++++|+||||||||+||.+++.+. +.....++..+. ..+..| .+++.++.+++.++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47778889999999999999999998875 334444444332 122223 45678888999999
Q ss_pred hCCCEEEEEeccchhhccc---CCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEec
Q 005014 484 QSAPCVLFFDELDSIATQR---GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 539 (719)
Q Consensus 484 ~~~p~il~iDEid~l~~~r---~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~at 539 (719)
...|++|||||++.+.+.+ +.......+...|+++++|.+|.+.....+++||++.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 9999999999999988753 3221111222578999999999998777777766554
No 111
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=6.6e-14 Score=149.89 Aligned_cols=188 Identities=20% Similarity=0.206 Sum_probs=130.9
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC------CeEEEEecc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGP 461 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~------~~~i~v~~~ 461 (719)
....|+++.|.+.+++.|...+.. + ...+++|+||||||||++|+++|+.++ ..++.++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS-----------A--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC-----------T--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc-----------C--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 345788999999999888877643 1 123499999999999999999999864 357788876
Q ss_pred chhhhccCCchhhHHHHHHHHH----------------hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhc
Q 005014 462 ELLTMWFGESEANVREIFDKAR----------------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 525 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~----------------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld 525 (719)
+..+ ...++..+.... ...+.|+|+||+|.+.. ...+.|+..|+
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------------~~~~~Ll~~le 158 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------------DAQSALRRTME 158 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------------HHHHHHHHHHH
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------------HHHHHHHHHHH
Confidence 6421 112222111111 13457999999998743 23466777776
Q ss_pred CCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHH
Q 005014 526 GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADIT 604 (719)
Q Consensus 526 ~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~ 604 (719)
... .+..+|++||.++.+++++.+ |+. .+.|++|+.++...+++..+.+.++. .+..++.+++.+.| +.+.+.
T Consensus 159 ~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~ 232 (353)
T 1sxj_D 159 TYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGI 232 (353)
T ss_dssp HTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHH
T ss_pred hcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 543 345667788999999999998 887 89999999999999999988765443 23346677777764 456666
Q ss_pred HHHHHHHHHH
Q 005014 605 EICQRACKYA 614 (719)
Q Consensus 605 ~~~~~A~~~a 614 (719)
++++.+...+
T Consensus 233 ~~l~~~~~~~ 242 (353)
T 1sxj_D 233 TLLQSASKGA 242 (353)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHHHhc
Confidence 6666665543
No 112
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.53 E-value=4.9e-14 Score=156.52 Aligned_cols=183 Identities=27% Similarity=0.375 Sum_probs=128.8
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 185 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v 185 (719)
+-.++++.|.++.++++.+.+.. ....++||+||||||||++++++|..+ +..++.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34688899999999998887754 234589999999999999999999997 6778888
Q ss_pred echhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCC
Q 005014 186 NGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 265 (719)
Q Consensus 186 ~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~ 265 (719)
++. ..+.|+.+..++.+|..+....+.+|||| . .. ...+.|+ ....++.+.+|++||.
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-~~---------~a~~~L~----~~L~~g~v~vI~at~~ 300 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-AI---------DASNILK----PSLARGELQCIGATTL 300 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------C----CCTTSSSCEEEEECCT
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-ch---------hHHHHHH----HhhcCCCEEEEecCCH
Confidence 876 66777778889999999998889999999 1 00 0112222 2233567889999998
Q ss_pred CC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCC----C-CCcccHHHHHHHhCCCccc-----cHHHH
Q 005014 266 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK----L-SDDVDLERIAKDTHGYVGA-----DLAAL 330 (719)
Q Consensus 266 ~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~----l-~~~~~l~~la~~t~g~~~~-----dl~~l 330 (719)
++ .+++++++ ||. .+.++.|+.+++..||+.+...+. + ..+..+..++..+.+|... ....+
T Consensus 301 ~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 301 DEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp TTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 86 68999998 996 599999999999999997765532 1 1233467777777777654 55666
Q ss_pred HHHHHH
Q 005014 331 CTEAAL 336 (719)
Q Consensus 331 ~~~a~~ 336 (719)
+.+++.
T Consensus 378 l~~a~~ 383 (468)
T 3pxg_A 378 IDEAGS 383 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.52 E-value=2.5e-13 Score=143.79 Aligned_cols=192 Identities=16% Similarity=0.299 Sum_probs=124.5
Q ss_pred CCcccccc-c--hHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechh
Q 005014 116 EVGYDDVG-G--VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 189 (719)
Q Consensus 116 ~~~~~~i~-G--~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~ 189 (719)
..+|+++. | .......++.++..+- ..+.+++|+||||||||++++++++.+ +..++++++.+
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~~-----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENLG-----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTTT-----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCcC-----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 34666664 3 3444455555554321 235689999999999999999999998 88999999988
Q ss_pred hhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCC--
Q 005014 190 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN-- 267 (719)
Q Consensus 190 l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~-- 267 (719)
+...+.+.........|.... ..+++|||||++.+..+. .....+...++........+|+++++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l 145 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRHPQKL 145 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCChHHH
Confidence 765544333222222233322 247899999999986431 11233444444433444567777777766
Q ss_pred -CCCHHhhccCCCc--eEEEeCCCChHHHHHHHHHHhcC--CCCCCcccHHHHHHHhCCCccccHHHHHHHH
Q 005014 268 -SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGYVGADLAALCTEA 334 (719)
Q Consensus 268 -~ld~al~r~~Rf~--~~i~i~~P~~~~R~~il~~~~~~--~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a 334 (719)
.+++++++ ||. ..+.+++ +.+++..+++..+.. ..+. +..+..++..+ |. .+.+..++..+
T Consensus 146 ~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~-~~~l~~l~~~~-g~-~r~l~~~l~~~ 211 (324)
T 1l8q_A 146 DGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR-KEVIDYLLENT-KN-VREIEGKIKLI 211 (324)
T ss_dssp TTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHC-SS-HHHHHHHHHHH
T ss_pred HHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHhC-CC-HHHHHHHHHHH
Confidence 67899987 665 6789999 999999999887653 3333 33477778777 53 34444444443
No 114
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.51 E-value=1.3e-13 Score=145.19 Aligned_cols=189 Identities=22% Similarity=0.246 Sum_probs=129.3
Q ss_pred CCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccc
Q 005014 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE 462 (719)
Q Consensus 388 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~ 462 (719)
....|+++.|.+.+++.|...+.. + . ..+++|+||||||||++|+++++.+ +.+++.+++++
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER-----------K-N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT-----------T-C-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC-----------C-C-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 345788999999999999877642 1 1 2249999999999999999999986 34678888876
Q ss_pred hhhhccCCchhhHHHHHHHH-H-hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 005014 463 LLTMWFGESEANVREIFDKA-R-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 540 (719)
Q Consensus 463 l~~~~~g~se~~i~~~f~~a-~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn 540 (719)
..+ .......+....... . ...+.++||||+|.+.. ...+.|+..++.. ..++.+|++||
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~~~~ 140 (319)
T 2chq_A 79 ERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCRFILSCN 140 (319)
T ss_dssp TTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSS--SSSEEEEEEES
T ss_pred ccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEEEeC
Confidence 432 111112222222110 1 24478999999999732 3355666666643 34678889999
Q ss_pred CCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 541 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 541 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
.++.+++++.+ |+. .+.|++|+.+++..+++..+++.++.- +..+..++..+.| +.+.+.++++.++
T Consensus 141 ~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 141 YVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp CGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred ChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999998 886 899999999999999999987765542 2234555544432 4444445554443
No 115
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.49 E-value=3.9e-13 Score=147.97 Aligned_cols=191 Identities=18% Similarity=0.252 Sum_probs=126.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCC
Q 005014 154 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~ 228 (719)
+.+++|+||||||||||++++++.+ +..++++++.++...+.+.........|.......+.+|||||++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4689999999999999999999988 78889999887755433322211112233333336889999999998743
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCC---CCHHhhccCCCc--eEEEeCCCChHHHHHHHHHHhc-
Q 005014 229 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTK- 302 (719)
Q Consensus 229 ~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~---ld~al~r~~Rf~--~~i~i~~P~~~~R~~il~~~~~- 302 (719)
. .....|+..++.+...+..+|+++.+.+.. +++.+++ ||. ..+.+++|+.++|.+|++..+.
T Consensus 210 ~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 210 T---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp H---------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred h---------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 112345555554444556677766666654 7888887 664 6789999999999999987764
Q ss_pred -CCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHHhhccC
Q 005014 303 -NMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTS 375 (719)
Q Consensus 303 -~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 375 (719)
++.+..+ .+..++..+.| ..+++..++..+...+... ...++.+++..++...
T Consensus 279 ~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~------------------~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 279 EHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYKETT------------------GKEVDLKEAILLLKDF 332 (440)
T ss_dssp HTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS------------------SSCCCHHHHHHHTSTT
T ss_pred cCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh------------------CCCCCHHHHHHHHHHH
Confidence 3444444 37788888765 3455555555554333211 1236667777777654
No 116
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.49 E-value=4.9e-13 Score=144.25 Aligned_cols=186 Identities=22% Similarity=0.319 Sum_probs=135.6
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCe--------------
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 454 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~-------------- 454 (719)
...|+++.|.+.+.+.|...+.. + ..+..++|+||||||||++|+++|+.++..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 34678899999999888876532 1 223468999999999999999999987531
Q ss_pred ----------EEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHH
Q 005014 455 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 520 (719)
Q Consensus 455 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 520 (719)
++.+++.. ......++.+++.+.. ..+.|+||||+|.+. ....+.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~L 139 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNAL 139 (373)
T ss_dssp HHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HHHHHHH
T ss_pred HHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------------HHHHHHH
Confidence 23333221 0123456777776653 346899999999873 2356778
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 005014 521 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 599 (719)
Q Consensus 521 l~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~~~s 599 (719)
+..++.. ..++++|++||.++.+.+++.+ |+ ..+.|++|+.++...+++..+++.++.- +..+..+++.+.| +
T Consensus 140 l~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~ 213 (373)
T 1jr3_A 140 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 213 (373)
T ss_dssp HHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-C
T ss_pred HHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-C
Confidence 8888754 3467888889988899999987 87 6899999999999999999887655432 2235677777765 7
Q ss_pred HHHHHHHHHHHHH
Q 005014 600 GADITEICQRACK 612 (719)
Q Consensus 600 g~di~~~~~~A~~ 612 (719)
.+++.+++..+..
T Consensus 214 ~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 214 LRDALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888877754
No 117
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.48 E-value=5.2e-14 Score=135.69 Aligned_cols=152 Identities=25% Similarity=0.412 Sum_probs=107.9
Q ss_pred CCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Q 005014 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 185 (719)
Q Consensus 116 ~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v 185 (719)
+-.++++.|.+++++.+.+.+.. ..+.+++|+||||||||+++++++..+ +..++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 44678899999988888776532 235689999999999999999999987 6778888
Q ss_pred echhhhh--hcccchHHHHHHHHHHHHhc-CCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEe
Q 005014 186 NGPEIMS--KLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 262 (719)
Q Consensus 186 ~~~~l~~--~~~g~~~~~l~~vf~~a~~~-~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~a 262 (719)
++..+.. .+.+.....+..++...... .+.+|||||++.+.+........ ..+...|...++ ...+.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~~~~~~l~~~~~----~~~~~ii~~ 158 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--LDAGNILKPMLA----RGELRCIGA 158 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--CCTHHHHHHHHH----TTCSCEEEE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--hHHHHHHHHHHh----cCCeeEEEe
Confidence 8877653 23445566677777776654 67899999999997543311100 112233333333 346678888
Q ss_pred cCCCC-----CCCHHhhccCCCceEEEeCCCC
Q 005014 263 TNRPN-----SIDPALRRFGRFDREIDIGVPD 289 (719)
Q Consensus 263 tn~~~-----~ld~al~r~~Rf~~~i~i~~P~ 289 (719)
++.+. .+++++++ ||.. +.++.|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 88664 68999998 8874 8898885
No 118
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=7.8e-15 Score=167.13 Aligned_cols=163 Identities=20% Similarity=0.232 Sum_probs=105.0
Q ss_pred cccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEE----eccchhhhc--
Q 005014 394 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV----KGPELLTMW-- 467 (719)
Q Consensus 394 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v----~~~~l~~~~-- 467 (719)
.+.|++.+|+.+...+.... ...+.....+...++||+||||||||+||+++|..+...++.. ++.++....
T Consensus 296 ~I~G~e~vk~al~~~l~~g~--~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGV--PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCC--CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhCCC--cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 46789999888865443221 1111112233444799999999999999999999987655432 222222211
Q ss_pred ---cCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC-----------CCCcE
Q 005014 468 ---FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTV 533 (719)
Q Consensus 468 ---~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v 533 (719)
.|.....- ..+..|. .+|+||||||.+. ....+.|+..|+... -..++
T Consensus 374 ~~~~g~~~~~~-G~l~~A~---~gil~IDEid~l~--------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 374 EKGTGEYYLEA-GALVLAD---GGIAVIDEIDKMR--------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp GGGTSSCSEEE-CHHHHHS---SSEECCTTTTCCC--------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred ccccccccccC-CeeEecC---CCcEEeehhhhCC--------------HhHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 11111111 1222332 3599999999863 235677888887532 12467
Q ss_pred EEEEecCCCC-------------CCCcccCCCCCcce-EEEeCCCCHHHHHHHHHHHhcc
Q 005014 534 FIIGATNRPD-------------IIDPALLRPGRLDQ-LIYIPLPDEESRLQIFKACLRK 579 (719)
Q Consensus 534 ~vi~atn~~~-------------~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~~~~ 579 (719)
.||+|||+++ .|++++++ |||. .+..+.|+.+ ...|.++.++.
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 8999999986 89999999 9985 4556677878 88888887754
No 119
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.48 E-value=9.3e-13 Score=142.52 Aligned_cols=200 Identities=19% Similarity=0.227 Sum_probs=130.2
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---------CCeEEEEech
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGP 188 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---------~~~~i~v~~~ 188 (719)
..+++.|.+++++++...+...+. -..+.+++|+||||||||++++.+++.+ +..++.++|.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 347899999999988877643221 1345689999999999999999999988 7888999986
Q ss_pred hhhhh----------------cccc-hHHHHHHHHHHHHh-cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 005014 189 EIMSK----------------LAGE-SESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 250 (719)
Q Consensus 189 ~l~~~----------------~~g~-~~~~l~~vf~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~ 250 (719)
...+. ..+. ....+..+++.... ..+++|||||++.+.... .....+..++..+..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQE 161 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGC
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhh
Confidence 53211 0111 22224444444433 347899999999886432 012334444544443
Q ss_pred ccCCCcEEEEEecCCC---CCCCHHhhccCCCce-EEEeCCCChHHHHHHHHHHhcC----CCCCCcccHHHHHHHhC--
Q 005014 251 LKSRAHVIVIGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKN----MKLSDDVDLERIAKDTH-- 320 (719)
Q Consensus 251 ~~~~~~vivI~atn~~---~~ld~al~r~~Rf~~-~i~i~~P~~~~R~~il~~~~~~----~~l~~~~~l~~la~~t~-- 320 (719)
.....++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.++..++++..+.. ..+. +..+..++..+.
T Consensus 162 ~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALAARE 238 (387)
T ss_dssp C-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHHHSS
T ss_pred cCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHh
Confidence 3214577888888877 678889887 7765 8899999999999999876542 2233 234667777766
Q ss_pred -CCccccHHHHHHHHHH
Q 005014 321 -GYVGADLAALCTEAAL 336 (719)
Q Consensus 321 -g~~~~dl~~l~~~a~~ 336 (719)
|.. +.+..++..+..
T Consensus 239 ~G~~-r~~~~~l~~a~~ 254 (387)
T 2v1u_A 239 HGDA-RRALDLLRVAGE 254 (387)
T ss_dssp SCCH-HHHHHHHHHHHH
T ss_pred ccCH-HHHHHHHHHHHH
Confidence 542 334455555543
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.47 E-value=2e-12 Score=130.03 Aligned_cols=187 Identities=14% Similarity=0.120 Sum_probs=118.6
Q ss_pred Cccccccc---hHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC---CeEEEEechhh
Q 005014 117 VGYDDVGG---VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEI 190 (719)
Q Consensus 117 ~~~~~i~G---~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~---~~~i~v~~~~l 190 (719)
.+|+++.| .+..++.+..++.. ..+.+++|+||||||||+++++++..+. ..++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 56777665 24555656555432 2456899999999999999999998864 67788888776
Q ss_pred hhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcE-EEEEecCCCC--
Q 005014 191 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPN-- 267 (719)
Q Consensus 191 ~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~v-ivI~atn~~~-- 267 (719)
........ +. ...+.+|||||++.+.... .....|...++.......+ +|++++..+.
T Consensus 92 ~~~~~~~~--------~~--~~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 92 ASISTALL--------EG--LEQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGSCGGGG--------TT--GGGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHHHHHH--------Hh--ccCCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 55432111 11 1446899999999885431 1123344444443333333 5555555554
Q ss_pred -CCCHHhhccCCCc--eEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHHHH
Q 005014 268 -SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQC 338 (719)
Q Consensus 268 -~ld~al~r~~Rf~--~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 338 (719)
.+++.+.+ ||. ..+.+++|+.+++.+++...+...... .+..+..++..+.| ..+.+..++..+...+
T Consensus 153 ~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 153 GFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp TCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 44577876 664 889999999999999998876533222 23346777777765 3445555555554433
No 121
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=4.9e-13 Score=141.05 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=131.1
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccch
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPEL 463 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l 463 (719)
...|+++.|.+..++.|...+.. + ..+ +++|+||||+|||++|+++++.+ +..++.+++++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 45688899999999888876542 1 222 39999999999999999999985 345778877653
Q ss_pred hhhccCCchhhHHHHHHHHH-------hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEE
Q 005014 464 LTMWFGESEANVREIFDKAR-------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 536 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f~~a~-------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 536 (719)
. +...++.+++... ...+.++||||+|.+.. ...+.|+..++.. ..++.+|
T Consensus 84 ~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i 141 (323)
T 1sxj_B 84 R------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMELY--SNSTRFA 141 (323)
T ss_dssp C------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHHT--TTTEEEE
T ss_pred c------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhcc--CCCceEE
Confidence 1 2344555555443 33478999999999742 2345566666643 3457778
Q ss_pred EecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 537 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 537 ~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
++||.++.+++++.+ |+. .+.|++|+.+++..+++..+++.++. .+..+..+++.+.| +.+.+.++++.+.
T Consensus 142 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 142 FACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 888999999999988 876 89999999999999999988654433 22335667777754 5555556665554
No 122
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.46 E-value=8.5e-13 Score=138.68 Aligned_cols=201 Identities=18% Similarity=0.278 Sum_probs=131.3
Q ss_pred ccccchHHHHHHHHHHHHcc---cCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhh
Q 005014 120 DDVGGVRKQMAQIRELVELP---LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 193 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~---l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~ 193 (719)
.++.|.+.+++.+...+... +.+| -.+..++||+||||||||++|+++++.+ +.+++.++|..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDP-------NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCT-------TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc
Confidence 35789999999888877542 1111 1234579999999999999999999998 456888998765322
Q ss_pred c-----ccch----HHH-HHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC---------C
Q 005014 194 L-----AGES----ESN-LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS---------R 254 (719)
Q Consensus 194 ~-----~g~~----~~~-l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~---------~ 254 (719)
. .|.. ... ...+.........++|||||++.+.+ .+...|+..++.... -
T Consensus 90 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 90 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp THHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred ccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 1 1100 000 01222333334458999999998742 345667777664321 1
Q ss_pred CcEEEEEecCC--------------------------CCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCC----
Q 005014 255 AHVIVIGATNR--------------------------PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM---- 304 (719)
Q Consensus 255 ~~vivI~atn~--------------------------~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~---- 304 (719)
.++++|+|||. ...+++++.+ ||+..+.+++|+.+++..|++.++...
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 26778889987 3356778875 999999999999999999998654321
Q ss_pred -----CC-CCcccHHHHHHHhC--CCccccHHHHHHHHHHHHHH
Q 005014 305 -----KL-SDDVDLERIAKDTH--GYVGADLAALCTEAALQCIR 340 (719)
Q Consensus 305 -----~l-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~ 340 (719)
.+ ..+..+..++.... .+..+++..++..+...++.
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHH
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHH
Confidence 11 12223566666544 45677888888777655443
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.46 E-value=9.1e-13 Score=139.41 Aligned_cols=178 Identities=20% Similarity=0.281 Sum_probs=126.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhh
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 192 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~ 192 (719)
++.+-+|+++.|.++.++.+++.+.. -..+..+|++||||||||++++++++.++..++.+++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 34566899999999999999888762 12345688889999999999999999999999999986632
Q ss_pred hcccchHHHHHHHHHHHHhc-----CCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCC
Q 005014 193 KLAGESESNLRKAFEEAEKN-----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 267 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~-----~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~ 267 (719)
...++..+...... .+.++||||+|.+.. ......|+..++... ..+.+|++||.+.
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~~--~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAYS--SNCSIIITANNID 147 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHHG--GGCEEEEEESSGG
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhCC--CCcEEEEEeCCcc
Confidence 33444444443332 568999999998851 112345666666543 3567777999999
Q ss_pred CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh---------cCCCCCCcccHHHHHHHhCCCcc
Q 005014 268 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT---------KNMKLSDDVDLERIAKDTHGYVG 324 (719)
Q Consensus 268 ~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~---------~~~~l~~~~~l~~la~~t~g~~~ 324 (719)
.+++++++ || ..+.++.|+.++|.+|++... .++.+.+...+..++..+.|...
T Consensus 148 ~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 148 GIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR 210 (324)
T ss_dssp GSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT
T ss_pred ccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH
Confidence 99999998 77 469999999999877665432 12333331346777777666443
No 124
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.46 E-value=2.2e-12 Score=139.41 Aligned_cols=219 Identities=21% Similarity=0.240 Sum_probs=131.0
Q ss_pred cccchHHHHHHHHHHHHcccCChhhH-----------------hhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEE
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLF-----------------KSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF 183 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~-----------------~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i 183 (719)
.|+|++.+++.|...+...++..... ..-...++.++||+||||||||++|+++|..++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 48999999999988774322221110 0011235568999999999999999999999999999
Q ss_pred EEechhhh-hhcccch-HHHHHHHHHHH----HhcCCcEEEEccccccCCCCCCCchH---HHHHHHHHHHHHhhccc--
Q 005014 184 CINGPEIM-SKLAGES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLK-- 252 (719)
Q Consensus 184 ~v~~~~l~-~~~~g~~-~~~l~~vf~~a----~~~~p~iL~iDEid~l~~~~~~~~~~---~~~~v~~~L~~~l~~~~-- 252 (719)
.+++..+. ..+.|.. ...+...+... ....+++|||||++.+...+...... ....+...|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998765 2333432 34455555432 23457899999999998763321111 11235677888887531
Q ss_pred -----------------CCCcEEEEEecCCC-----------------------------------------CCCCHHhh
Q 005014 253 -----------------SRAHVIVIGATNRP-----------------------------------------NSIDPALR 274 (719)
Q Consensus 253 -----------------~~~~vivI~atn~~-----------------------------------------~~ld~al~ 274 (719)
...++++|+++|.. ..+.|.+.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12345677776520 12456666
Q ss_pred ccCCCceEEEeCCCChHHHHHHHHH----H-------h--cCCCC-CCcccHHHHHHHhC--CCccccHHHHHHHHHHHH
Q 005014 275 RFGRFDREIDIGVPDEVGRLEVLRI----H-------T--KNMKL-SDDVDLERIAKDTH--GYVGADLAALCTEAALQC 338 (719)
Q Consensus 275 r~~Rf~~~i~i~~P~~~~R~~il~~----~-------~--~~~~l-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~ 338 (719)
+ |++..+.+++++.++...|+.. + . ....+ ..+..+..++.... ....+.+..++..+....
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 5 8988899999999988888852 1 1 11111 12223555655533 345677887777776655
Q ss_pred HHh
Q 005014 339 IRE 341 (719)
Q Consensus 339 ~~~ 341 (719)
+.+
T Consensus 340 ~~~ 342 (376)
T 1um8_A 340 MFD 342 (376)
T ss_dssp HHT
T ss_pred Hhh
Confidence 543
No 125
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=7.1e-13 Score=140.11 Aligned_cols=184 Identities=24% Similarity=0.326 Sum_probs=129.7
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC-----CeEEEEeccch
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 463 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~-----~~~i~v~~~~l 463 (719)
...|+++.|.+.+++.|...+.. + . ..+++|+||||||||++|+++++.+. ..++.+++++.
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT-----------G-S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH-----------T-C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc-----------C-C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 45688999999999988876542 1 1 23499999999999999999999863 34778887654
Q ss_pred hhhccCCchhhHHHHHHH-HH-----hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 464 LTMWFGESEANVREIFDK-AR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f~~-a~-----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
.+. ..++..+.. +. ...+.++|+||+|.+.. ...+.|+..|+.. ..++.+|+
T Consensus 88 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~ 145 (327)
T 1iqp_A 88 RGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--SSNVRFIL 145 (327)
T ss_dssp HHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEEEEE
T ss_pred Cch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEE
Confidence 321 112222211 11 14578999999998732 3456677777653 34577888
Q ss_pred ecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 005014 538 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 611 (719)
Q Consensus 538 atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~d~~~la~~~~~~sg~di~~~~~~A~ 611 (719)
+||.++.+++++.+ |+. .+.|++|+.++...+++..++..++. .+..++.+++.+.| +.+.+.++++.+.
T Consensus 146 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 146 SCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 99999999999988 887 89999999999999999988766543 22235666766654 5566666666554
No 126
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.45 E-value=3.9e-12 Score=125.98 Aligned_cols=173 Identities=21% Similarity=0.241 Sum_probs=120.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEech
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGP 188 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~ 188 (719)
..+..|+++.|.++.++.+.+.+... ...+++|+||||||||++++.++..+ ...++.+++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 44567889999999999998887531 22359999999999999999999886 3456777765
Q ss_pred hhhhhcccchHHHHHHHHHHHH------hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEe
Q 005014 189 EIMSKLAGESESNLRKAFEEAE------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 262 (719)
Q Consensus 189 ~l~~~~~g~~~~~l~~vf~~a~------~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~a 262 (719)
.... ...+...+.... ...+.+|+|||++.+... ....|...++.. ...+.+|++
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~--~~~~~~i~~ 138 (226)
T 2chg_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMY--SKSCRFILS 138 (226)
T ss_dssp CTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT--TTTEEEEEE
T ss_pred cccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhc--CCCCeEEEE
Confidence 4322 122222222222 246789999999987531 234455566543 345677778
Q ss_pred cCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC--CCCCCcccHHHHHHHhCCC
Q 005014 263 TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGY 322 (719)
Q Consensus 263 tn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~--~~l~~~~~l~~la~~t~g~ 322 (719)
++.+..+++.+.+ |+. .+.+++|+.++..+++...+.. ..+ ....+..++..+.|.
T Consensus 139 ~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~ 196 (226)
T 2chg_A 139 CNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGD 196 (226)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTC
T ss_pred eCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCC
Confidence 8888889999987 776 8999999999999999876642 222 233466777776653
No 127
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.45 E-value=3.1e-13 Score=138.78 Aligned_cols=195 Identities=22% Similarity=0.242 Sum_probs=115.9
Q ss_pred CccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC---CeEEEEeccchhhh
Q 005014 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM 466 (719)
Q Consensus 390 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~---~~~i~v~~~~l~~~ 466 (719)
.+|+++.|.+...+.+.+.+... .....+++|+||||||||++|++++..+. .+|+.++++.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 35677788877766665544321 12235799999999999999999999874 68999999876321
Q ss_pred -----ccCCchh-------hHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC------
Q 005014 467 -----WFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS------ 528 (719)
Q Consensus 467 -----~~g~se~-------~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~------ 528 (719)
..|.... .....|..+ ..++||||||+.+.. .+...|+..|+...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCC
Confidence 1121100 001123333 346999999998742 34566676666321
Q ss_pred ---CCCcEEEEEecCCC-------CCCCcccCCCCCcc-eEEEeCCCCH--HHHHHHHHHHhcc----CCCCC--ccCHH
Q 005014 529 ---AKKTVFIIGATNRP-------DIIDPALLRPGRLD-QLIYIPLPDE--ESRLQIFKACLRK----SPVSK--DVDLR 589 (719)
Q Consensus 529 ---~~~~v~vi~atn~~-------~~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~~--~~d~~ 589 (719)
...++.||+|||.+ ..++++|.+ ||+ ..|.+|+++. ++...+++.++++ ..... .++-+
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 12357899999985 247788887 886 4567776654 5566666655532 33221 34444
Q ss_pred HHHHHc-cCCC--HHHHHHHHHHHHHHH
Q 005014 590 ALAKYT-QGFS--GADITEICQRACKYA 614 (719)
Q Consensus 590 ~la~~~-~~~s--g~di~~~~~~A~~~a 614 (719)
.+.... ..|. .++++++++.++..+
T Consensus 213 a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 213 ARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 443332 2344 478888888876543
No 128
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=2.6e-13 Score=152.70 Aligned_cols=194 Identities=22% Similarity=0.307 Sum_probs=126.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHHccc-CChhhHhhhCCC---CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEech
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPL-RHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP 188 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l-~~~~~~~~l~~~---~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~ 188 (719)
+..+.+|++++|.+..+++|.+.+.... .++..++..|.. ++.++||+||||||||++|+++|++++..++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3456689999999999999998886421 112223333332 557899999999999999999999999999999998
Q ss_pred hhhhhcccchH-------HHHHHHHHHH-----HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCc
Q 005014 189 EIMSKLAGESE-------SNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 256 (719)
Q Consensus 189 ~l~~~~~g~~~-------~~l~~vf~~a-----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~ 256 (719)
++......... ..+..+|..+ ....+++|||||+|.+..... ..+..|..+++. ....
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~--~~~~ 181 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRK--TSTP 181 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHH--CSSC
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHh--cCCC
Confidence 75432211000 0011222222 225678999999999876432 123455566554 2345
Q ss_pred EEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhc--CCCCCCcccHHHHHHHhCC
Q 005014 257 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHG 321 (719)
Q Consensus 257 vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~--~~~l~~~~~l~~la~~t~g 321 (719)
+++++++.....+.+ + .|+...+.++.|+.+++.+++...+. ++.+..+ .+..++..+.|
T Consensus 182 iIli~~~~~~~~l~~-l---~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G 243 (516)
T 1sxj_A 182 LILICNERNLPKMRP-F---DRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG 243 (516)
T ss_dssp EEEEESCTTSSTTGG-G---TTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT
T ss_pred EEEEEcCCCCccchh-h---HhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 666555443333432 3 35567899999999999999876543 3444443 47888888765
No 129
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.44 E-value=1.8e-13 Score=114.78 Aligned_cols=86 Identities=17% Similarity=0.356 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccc
Q 005014 565 DEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEV 644 (719)
Q Consensus 565 ~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (719)
|.++|.+||+.++++.++..++|++.||+.|+||||+||.++|++|++.|+++. .
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------~ 56 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------R 56 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-------------------------C
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-------------------------c
Confidence 668999999999999999999999999999999999999999999999999874 2
Q ss_pred ccccHHHHHHHHhhcCCCCCH-HHHHHHHHHH
Q 005014 645 AEIKAVHFEESMKYARRSVSD-ADIRKYQAFA 675 (719)
Q Consensus 645 ~~v~~~~~~~a~~~~~~sv~~-~~~~~~~~~~ 675 (719)
..|+++||..|++++.+++.. .....|..|.
T Consensus 57 ~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 57 KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp SSBCHHHHHHHHHHHTC---------------
T ss_pred ccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 369999999999999988865 4588888884
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=2.4e-12 Score=137.88 Aligned_cols=186 Identities=16% Similarity=0.225 Sum_probs=126.4
Q ss_pred CCccccccccHHHHHHhhhcc-ccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh-CC-------------
Q 005014 389 NVNWEDIGGLENVKRELQETV-QYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QA------------- 453 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i-~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~-~~------------- 453 (719)
+.+|+++.|.+.+.+.|...+ .. + ..+. ++|+|||||||||+++++|+.+ +.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 456889999999999988776 21 1 2233 9999999999999999999964 11
Q ss_pred ---------------eEEEEeccchhhhccCC-chhhHHHHHHHHH--------------hCCCEEEEEeccchhhcccC
Q 005014 454 ---------------NFISVKGPELLTMWFGE-SEANVREIFDKAR--------------QSAPCVLFFDELDSIATQRG 503 (719)
Q Consensus 454 ---------------~~i~v~~~~l~~~~~g~-se~~i~~~f~~a~--------------~~~p~il~iDEid~l~~~r~ 503 (719)
.++.+++++. +. ....++..++.+. ...|.|+++||++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~---- 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT---- 147 (354)
T ss_dssp ---------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC----
T ss_pred ccccccceeeeecccceEEecHhhc-----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC----
Confidence 1222222211 11 1113455554432 2257799999999852
Q ss_pred CCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCC
Q 005014 504 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS 583 (719)
Q Consensus 504 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~ 583 (719)
....+.|+..|+... .+..+|.+||.++.+.+++.+ |+ .++.|++|+.+++..+++..+++.++.
T Consensus 148 ----------~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 148 ----------KDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp ----------HHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred ----------HHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 234566666666543 357888889999999999988 88 789999999999999999988765543
Q ss_pred -C-ccCHHHHHHHccCCCHHHHHHHHHHHHH
Q 005014 584 -K-DVDLRALAKYTQGFSGADITEICQRACK 612 (719)
Q Consensus 584 -~-~~d~~~la~~~~~~sg~di~~~~~~A~~ 612 (719)
. +..+..+++.+.| +.+++.++++.+..
T Consensus 213 ~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 213 LETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp ECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred CCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 2 3346777777654 56666666665544
No 131
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.6e-13 Score=138.40 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=111.7
Q ss_pred ccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEechhhh
Q 005014 122 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCINGPEIM 191 (719)
Q Consensus 122 i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----------~~~~i~v~~~~l~ 191 (719)
+.|-++++++|..++.-.+ .-..+.+++|+||||||||++++.++.++ ...++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i---------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL---------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 5566777777766654322 23567889999999999999999999998 3467899986543
Q ss_pred h----------hcc------cchHHHHHHHHHHH--HhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC
Q 005014 192 S----------KLA------GESESNLRKAFEEA--EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 253 (719)
Q Consensus 192 ~----------~~~------g~~~~~l~~vf~~a--~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~ 253 (719)
+ ... +.....+...|... ....++|+++||+|.+. . +.++..|+.+.. ..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~--~~ 160 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWIS--SK 160 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHH--CS
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhccc--cc
Confidence 2 221 23456677888764 34567899999999997 1 234444554432 24
Q ss_pred CCcEEEEEecCCCCCCC----HHhhccCCCc-eEEEeCCCChHHHHHHHHHHhcC
Q 005014 254 RAHVIVIGATNRPNSID----PALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN 303 (719)
Q Consensus 254 ~~~vivI~atn~~~~ld----~al~r~~Rf~-~~i~i~~P~~~~R~~il~~~~~~ 303 (719)
..++++|+++|..+..+ +++++ ||. ..|.|++++.++..+|++..+..
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 56789999999876443 33444 775 67999999999999999876543
No 132
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.43 E-value=1e-13 Score=115.21 Aligned_cols=82 Identities=30% Similarity=0.415 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccc
Q 005014 565 DEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEV 644 (719)
Q Consensus 565 ~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (719)
|.++|.+||+.++++.++..++|++.||+.|+||||+||.++|++|++.|+++. .
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------~ 56 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------R 56 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-------------------------C
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------------------------c
Confidence 789999999999999999899999999999999999999999999999988754 2
Q ss_pred ccccHHHHHHHHhhcCCCCCHHHHHHHH
Q 005014 645 AEIKAVHFEESMKYARRSVSDADIRKYQ 672 (719)
Q Consensus 645 ~~v~~~~~~~a~~~~~~sv~~~~~~~~~ 672 (719)
..|+++||..|++.++||++ +++++|+
T Consensus 57 ~~i~~~df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 57 YIVLAKDFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp SSBCHHHHHHHHHHHCC-----------
T ss_pred CCcCHHHHHHHHHHHccCch-HHHHhcC
Confidence 47999999999999999999 8888875
No 133
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.42 E-value=2.1e-12 Score=141.95 Aligned_cols=172 Identities=22% Similarity=0.306 Sum_probs=118.8
Q ss_pred cCCCCccccccchHHHH---HHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechh
Q 005014 113 RLDEVGYDDVGGVRKQM---AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 189 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~---~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~ 189 (719)
++.+.+++++.|.+..+ +.|+..+... ...++||+||||||||++|+++++.++..++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 34566899999999988 6676666531 1257999999999999999999999999999988643
Q ss_pred hhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEec--
Q 005014 190 IMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT-- 263 (719)
Q Consensus 190 l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~at-- 263 (719)
. ....++.++..+. ...+.+|||||+|.+.... ...|+..++. ..+++|++|
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-----------q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-----------QDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESS
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-----------HHHHHHHHhc----CceEEEecCCC
Confidence 2 1234455555443 3567899999999885432 1335555553 345566555
Q ss_pred CCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCC-------C-CCcccHHHHHHHhCCC
Q 005014 264 NRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-------L-SDDVDLERIAKDTHGY 322 (719)
Q Consensus 264 n~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~-------l-~~~~~l~~la~~t~g~ 322 (719)
|....+++++.+ |+. .+.+.+|+.++...+++..+.... + ..+..+..++..+.|.
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd 207 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD 207 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC
Confidence 334578999998 774 678999999999999988765421 1 1233467777776654
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=7.9e-12 Score=135.26 Aligned_cols=175 Identities=21% Similarity=0.219 Sum_probs=120.7
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh-----------CCeEEEEech
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----------GAFFFCINGP 188 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l-----------~~~~i~v~~~ 188 (719)
+++.|.+++++++.+.+..... -..+.+++|+||||||||++++++++.+ +..++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 7799999999999887754222 1345689999999999999999999987 8899999986
Q ss_pred hhh-h----------hc-------ccc-hHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHH-HHHHHHHh
Q 005014 189 EIM-S----------KL-------AGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI-VSQLLTLM 248 (719)
Q Consensus 189 ~l~-~----------~~-------~g~-~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v-~~~L~~~l 248 (719)
... . .. .+. ....+..+++...... .+|||||++.+..... ..+ +..|.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~-------~~~~l~~l~--- 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG-------GDIVLYQLL--- 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT-------SHHHHHHHH---
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC-------CceeHHHHh---
Confidence 543 1 00 011 1223444444443333 3999999998864321 012 22333
Q ss_pred hcccCCCcEEEEEecCCC---CCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC----CCCCCcccHHHHHHHhC
Q 005014 249 DGLKSRAHVIVIGATNRP---NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN----MKLSDDVDLERIAKDTH 320 (719)
Q Consensus 249 ~~~~~~~~vivI~atn~~---~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~----~~l~~~~~l~~la~~t~ 320 (719)
... .++.+|++++.+ +.+++.+++ ||...+.+++|+.++..+++...+.. ..+ .+..+..+++.+.
T Consensus 160 ~~~---~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~ 232 (384)
T 2qby_B 160 RSD---ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISA 232 (384)
T ss_dssp TSS---SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHH
T ss_pred cCC---cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHH
Confidence 222 578888888876 678999887 88779999999999999999877642 222 2334667777766
No 135
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.39 E-value=3.6e-13 Score=140.96 Aligned_cols=168 Identities=23% Similarity=0.281 Sum_probs=107.3
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhh-----ccCC--------chhhHHHHHHHHHhCCCEEE
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGE--------SEANVREIFDKARQSAPCVL 490 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~-----~~g~--------se~~i~~~f~~a~~~~p~il 490 (719)
..++||+||||||||++|++++..+ +.+|+.++++.+... ..|. .. .....|..+.. ++|
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a~~---g~L 100 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEADG---GTL 100 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHHTT---SEE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhcCC---CEE
Confidence 4569999999999999999999975 578999998876321 1221 11 12234555543 599
Q ss_pred EEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC---------CCCcEEEEEecCCC-------CCCCcccCCCCC
Q 005014 491 FFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-------DIIDPALLRPGR 554 (719)
Q Consensus 491 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~atn~~-------~~ld~allrpgR 554 (719)
|||||+.+.. .+...|+..|+... ...++.||+|||++ ..+++.|.. |
T Consensus 101 ~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--R 164 (304)
T 1ojl_A 101 FLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--R 164 (304)
T ss_dssp EEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--H
T ss_pred EEeccccCCH--------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--h
Confidence 9999999732 35667777777532 12357899999985 245666666 7
Q ss_pred cc-eEEEeCCCC--HHHHHHHHHHHhcc----CCCC-CccCH---HHHHHHccCCCHHHHHHHHHHHHHHH
Q 005014 555 LD-QLIYIPLPD--EESRLQIFKACLRK----SPVS-KDVDL---RALAKYTQGFSGADITEICQRACKYA 614 (719)
Q Consensus 555 f~-~~i~~~~p~--~~~r~~Il~~~~~~----~~~~-~~~d~---~~la~~~~~~sg~di~~~~~~A~~~a 614 (719)
|. ..|++|++. .++...+++.++++ .... ..++- ..|....-.-+.+++++++..|+..+
T Consensus 165 l~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 165 LNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred cCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 75 335666665 35566677766643 2211 22343 33433331234578999999887755
No 136
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.39 E-value=4.2e-13 Score=111.71 Aligned_cols=78 Identities=31% Similarity=0.525 Sum_probs=71.5
Q ss_pred EeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccc
Q 005014 560 YIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEED 639 (719)
Q Consensus 560 ~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (719)
+-.+||.++|.+||+.++++.++..++|++.||+.|+|||||||.++|++|++.|+++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--------------------- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--------------------- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc---------------------
Confidence 34689999999999999999999899999999999999999999999999999999864
Q ss_pred cccccccccHHHHHHHHhhcCCC
Q 005014 640 VEDEVAEIKAVHFEESMKYARRS 662 (719)
Q Consensus 640 ~~~~~~~v~~~~~~~a~~~~~~s 662 (719)
...|+++||..|++.++|.
T Consensus 66 ----~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 ----RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ----CSEECHHHHHHHHHHHHCC
T ss_pred ----CCCCCHHHHHHHHHHHccC
Confidence 2479999999999998774
No 137
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.38 E-value=5.6e-12 Score=133.77 Aligned_cols=152 Identities=23% Similarity=0.269 Sum_probs=104.8
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEech------hhhh
Q 005014 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIMS 192 (719)
Q Consensus 119 ~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~------~l~~ 192 (719)
++++.|.++.++.+...+.. +.++||+||||||||++|+++|+.++..++.+++. ++.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 45788888887777655432 25899999999999999999999999999888873 2222
Q ss_pred hcccchHHHHHHHHHHHHhcC---CcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc---------cCCCcEEEE
Q 005014 193 KLAGESESNLRKAFEEAEKNA---PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL---------KSRAHVIVI 260 (719)
Q Consensus 193 ~~~g~~~~~l~~vf~~a~~~~---p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~---------~~~~~vivI 260 (719)
........ ..+. .... .+++||||++.+.+ .....|+..++.. ....+++++
T Consensus 91 ~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 91 TMIYNQHK---GNFE--VKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp EEEEETTT---TEEE--EEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred ceeecCCC---CceE--eccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 11100000 0000 0011 36999999998642 2334555555532 123467788
Q ss_pred EecCCCC-----CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC
Q 005014 261 GATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 303 (719)
Q Consensus 261 ~atn~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~ 303 (719)
+|+|+.+ .+++++++ ||...+.++.|+.+++.+|++.....
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 8888654 38999998 99888999999999999999887654
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=1.3e-11 Score=133.44 Aligned_cols=199 Identities=20% Similarity=0.267 Sum_probs=127.7
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEechhhh
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET------GAFFFCINGPEIM 191 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l------~~~~i~v~~~~l~ 191 (719)
..+++.|.+++++.+.+.+...+. -..+..++|+||+|||||++++.+++.+ +..++.++|....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 347899999999988876643221 1345689999999999999999999988 8889999976432
Q ss_pred h------h----------cccc-hHHHHHHHHHHHHhc-CCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC
Q 005014 192 S------K----------LAGE-SESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 253 (719)
Q Consensus 192 ~------~----------~~g~-~~~~l~~vf~~a~~~-~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~ 253 (719)
. . ..+. .......+++..... .|.+|+|||++.+...... .++..++..++.. .
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-------~~l~~l~~~~~~~-~ 160 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-------DILYKLSRINSEV-N 160 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-------THHHHHHHHHHSC-C
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-------HHHHHHhhchhhc-C
Confidence 1 1 0111 223344444444433 3899999999988644211 1344555555543 3
Q ss_pred CCcEEEEEecCCC---CCCCHHhhccCCCc-eEEEeCCCChHHHHHHHHHHhcC-C--CCCCcccHHHHHHHhC---CCc
Q 005014 254 RAHVIVIGATNRP---NSIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN-M--KLSDDVDLERIAKDTH---GYV 323 (719)
Q Consensus 254 ~~~vivI~atn~~---~~ld~al~r~~Rf~-~~i~i~~P~~~~R~~il~~~~~~-~--~l~~~~~l~~la~~t~---g~~ 323 (719)
..++.+|++++.+ ..+++.+.+ ||. +.+.+++++.++..+++...+.. . ....+..+..++..+. |..
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~ 238 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDA 238 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCH
T ss_pred CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCH
Confidence 4577888888876 456777776 564 58999999999999999876532 1 1112233556666665 543
Q ss_pred cccHHHHHHHHHH
Q 005014 324 GADLAALCTEAAL 336 (719)
Q Consensus 324 ~~dl~~l~~~a~~ 336 (719)
. .+..++..+..
T Consensus 239 r-~~~~ll~~a~~ 250 (386)
T 2qby_A 239 R-RALDLLRVSGE 250 (386)
T ss_dssp H-HHHHHHHHHHH
T ss_pred H-HHHHHHHHHHH
Confidence 2 33345555543
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.38 E-value=5.5e-12 Score=126.61 Aligned_cols=186 Identities=19% Similarity=0.256 Sum_probs=125.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe------------
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 181 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~------------ 181 (719)
..+-.++++.|.+..++.|.+.+... ..+..++|+||+|+|||++++.+++.++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34556888999999999988877531 223479999999999999999999887432
Q ss_pred ------------EEEEechhhhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 005014 182 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 245 (719)
Q Consensus 182 ------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~ 245 (719)
++.+++.. ......++.+++... ...+.+|+|||++.+.. .....|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~ 147 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 147 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHH
Confidence 12222111 112234455554432 23578999999998731 2334566
Q ss_pred HHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCcc
Q 005014 246 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 324 (719)
Q Consensus 246 ~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 324 (719)
..++.. ...+.+|.+|+.+..+++.+.+ |+ ..+.+++|+.++..+++...+...... ....+..+++.+.| ..
T Consensus 148 ~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 148 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp HHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 666543 3467777888888888888887 64 789999999999999998776432221 23347788888877 44
Q ss_pred ccHHHHHHHH
Q 005014 325 ADLAALCTEA 334 (719)
Q Consensus 325 ~dl~~l~~~a 334 (719)
+.+..++..+
T Consensus 222 ~~~~~~~~~~ 231 (250)
T 1njg_A 222 RDALSLTDQA 231 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 140
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.38 E-value=1.1e-11 Score=132.31 Aligned_cols=159 Identities=22% Similarity=0.351 Sum_probs=97.5
Q ss_pred CCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEE----Eechhh
Q 005014 115 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC----INGPEI 190 (719)
Q Consensus 115 ~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~----v~~~~l 190 (719)
+..+|+++.|.+..++.+...... ....++||+||||||||++|++++..++..... ++|...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 456899999999866654332211 122469999999999999999999998632110 111110
Q ss_pred hh---------------------hcccchHHHH------HHHHHHH---------HhcCCcEEEEccccccCCCCCCCch
Q 005014 191 MS---------------------KLAGESESNL------RKAFEEA---------EKNAPSIIFIDEIDSIAPKREKTHG 234 (719)
Q Consensus 191 ~~---------------------~~~g~~~~~l------~~vf~~a---------~~~~p~iL~iDEid~l~~~~~~~~~ 234 (719)
.. ...+.....+ ...+... ....+++|||||++.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~------ 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH------ 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH------
Confidence 00 0001111110 1112111 1123679999999987532
Q ss_pred HHHHHHHHHHHHHhhcc----c-------CCCcEEEEEecCCCC-CCCHHhhccCCCceEEEeCCC-ChHHHHHHHHH
Q 005014 235 EVERRIVSQLLTLMDGL----K-------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLEVLRI 299 (719)
Q Consensus 235 ~~~~~v~~~L~~~l~~~----~-------~~~~vivI~atn~~~-~ld~al~r~~Rf~~~i~i~~P-~~~~R~~il~~ 299 (719)
....|+..++.. . ...++++|+++|+.+ .+++++++ ||...+.++.| +.+.+.+|++.
T Consensus 160 -----~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 160 -----IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 234555555531 1 113688999999744 88999998 99988999999 67777788765
No 141
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.37 E-value=2.2e-11 Score=156.82 Aligned_cols=354 Identities=17% Similarity=0.233 Sum_probs=188.8
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCc
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 233 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~ 233 (719)
..++++.||+|||||++++.+|+.+|.+++.++|++-++ ...+..+|..+... .+++++||++.+.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~------ 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE------ 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh------
Confidence 458999999999999999999999999999999987543 24556777766544 36999999997643
Q ss_pred hHHHHHHHHHHHHHhhcc--------------cCCCcEEEEEecCC----CCCCCHHhhccCCCceEEEeCCCChHHHHH
Q 005014 234 GEVERRIVSQLLTLMDGL--------------KSRAHVIVIGATNR----PNSIDPALRRFGRFDREIDIGVPDEVGRLE 295 (719)
Q Consensus 234 ~~~~~~v~~~L~~~l~~~--------------~~~~~vivI~atn~----~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 295 (719)
++...+..++......+ .......|++|.|+ ...+++++++ || +.+.+..||.+...+
T Consensus 712 -evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 712 -KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHH
Confidence 23333333333322211 12335567778884 3468899987 66 789999999998888
Q ss_pred HHHHHhcCCCCCCc-----ccHHHHH-HHhC-----CCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhh---cc
Q 005014 296 VLRIHTKNMKLSDD-----VDLERIA-KDTH-----GYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILN---SM 361 (719)
Q Consensus 296 il~~~~~~~~l~~~-----~~l~~la-~~t~-----g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 361 (719)
|+-... +...... +.+-.++ +... .|.-+.+..++..|+... +... .++.+...... ..
T Consensus 788 i~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk--r~~~----~e~~~l~~al~~~~lp 860 (2695)
T 4akg_A 788 MILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI--SEFG----EGEKTVVESLKRVILP 860 (2695)
T ss_dssp HHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH--HHSC----SSHHHHHHHHHHHTGG
T ss_pred HHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh--ccCC----cHHHHHHHHHHHhccc
Confidence 753221 1111100 0011111 1111 244455655555543221 1110 11111101000 01
Q ss_pred ccchH---HHHHhhccCCCCcccceeeccCCCccccccccHHHHHHhhhcccc-CCC-Ch-------hhhhhhcCCCCcc
Q 005014 362 AVTDE---HFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQY-PVE-HP-------EKFEKFGMSPSKG 429 (719)
Q Consensus 362 ~v~~~---~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~-~~~-~~-------~~~~~~~~~~~~g 429 (719)
.+..+ .|...+....|.. ..| .+...+++.+.+.+.. .+. .+ ++++-+ ....|
T Consensus 861 k~~~~D~~lf~~li~dlFp~~------~~~-------~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~--~~r~g 925 (2695)
T 4akg_A 861 SLGDTDELVFKDELSKIFDSA------GTP-------LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQ--KTQQA 925 (2695)
T ss_dssp GCCHHHHHHHHHHHHHHCCCC------SCC-------SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HHCSE
T ss_pred cCchhhHHHHHHHHHHhCCCC------CCC-------CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHH--Hhcce
Confidence 11122 2333333333321 111 1222233333222110 000 11 122221 23468
Q ss_pred eeeecCCCCchhHHHHHHHHHh----CC--eEEEEecc-----chhhhccCCc----hhhHHHHHHHHHhCC-------C
Q 005014 430 VLFYGPPGCGKTLLAKAIANEC----QA--NFISVKGP-----ELLTMWFGES----EANVREIFDKARQSA-------P 487 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~----~~--~~i~v~~~-----~l~~~~~g~s----e~~i~~~f~~a~~~~-------p 487 (719)
++|+||||||||++.+.+|..+ +. ....++.. ++++.+...+ ...+..+++.+.... .
T Consensus 926 vmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~ 1005 (2695)
T 4akg_A 926 LILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSR 1005 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcceecCCCCeEecChHHHHHHHHHhccccccCCCC
Confidence 9999999999999999999764 22 23444443 3333222111 233555665543211 2
Q ss_pred EEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC-----CC------CCcEEEEEecCCCCCCCcccCCCCCcc
Q 005014 488 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA------KKTVFIIGATNRPDIIDPALLRPGRLD 556 (719)
Q Consensus 488 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~------~~~v~vi~atn~~~~ld~allrpgRf~ 556 (719)
.-|+||- + +....+..|=+.||.- .+ ..++-+|+-+.......||..+ |+.
T Consensus 1006 ~WivfDG-------------~---vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASPATVS--RcG 1067 (2695)
T 4akg_A 1006 IWVVFDS-------------D---LDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATIT--RCG 1067 (2695)
T ss_dssp EEEEECS-------------C---CCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCHHHHH--HSE
T ss_pred eEEEECC-------------C---CCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCcccee--eee
Confidence 4688881 1 1133444444455542 11 2345677777778888999998 997
Q ss_pred eEEEeCCCC
Q 005014 557 QLIYIPLPD 565 (719)
Q Consensus 557 ~~i~~~~p~ 565 (719)
.||+.+-+
T Consensus 1068 -mvy~~~~~ 1075 (2695)
T 4akg_A 1068 -LLWFSTDV 1075 (2695)
T ss_dssp -EEECCSCS
T ss_pred -EEEecCCc
Confidence 88887643
No 142
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.37 E-value=8.9e-13 Score=108.09 Aligned_cols=75 Identities=33% Similarity=0.595 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccc
Q 005014 562 PLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVE 641 (719)
Q Consensus 562 ~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (719)
|+||.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~----------------------- 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER----------------------- 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------------
Confidence 789999999999999999999899999999999999999999999999999999864
Q ss_pred cccccccHHHHHHHHhhcCC
Q 005014 642 DEVAEIKAVHFEESMKYARR 661 (719)
Q Consensus 642 ~~~~~v~~~~~~~a~~~~~~ 661 (719)
...|+++||..|++++..
T Consensus 58 --~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 58 --RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp --CSEECHHHHHHHHHHHHC
T ss_pred --CCCCCHHHHHHHHHHHHh
Confidence 247999999999998754
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.36 E-value=4.7e-11 Score=126.72 Aligned_cols=194 Identities=21% Similarity=0.313 Sum_probs=127.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhh
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 193 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~ 193 (719)
+..-+++++.|.+..++.+...+..... - -.++.+++|+||||||||||++++|+.++..+...++..+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM-------R-GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH-------H-TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh-------c-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 3444677888888877777665542110 0 124467999999999999999999999998877776654321
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-------C---------CCcE
Q 005014 194 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------S---------RAHV 257 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-------~---------~~~v 257 (719)
...+..++.. .....|+|+||++.+.+. +.+.|...+.... . -..+
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-----------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLNKA-----------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCCCC---------------CCC
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----------HHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1223333322 234579999999988531 1122333332211 0 1235
Q ss_pred EEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCccccHHHHHHHHHH
Q 005014 258 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAAL 336 (719)
Q Consensus 258 ivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 336 (719)
.++++++.+..+++.+++ ||...+.+.+|+.++..++++...+..... ++..+..++..+.|.. +.+..++..+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHHH
Confidence 677889999999999998 998889999999999999998776533322 2334778888888754 455566665543
Q ss_pred H
Q 005014 337 Q 337 (719)
Q Consensus 337 ~ 337 (719)
.
T Consensus 229 ~ 229 (334)
T 1in4_A 229 M 229 (334)
T ss_dssp H
T ss_pred H
Confidence 3
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.35 E-value=2.6e-11 Score=131.37 Aligned_cols=199 Identities=20% Similarity=0.178 Sum_probs=128.6
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCc--eEEEECCCCCChHHHHHHHHHHh----CCeEEEEechhhh
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK--GILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIM 191 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~--~vLL~GppGtGKTtla~~la~~l----~~~~i~v~~~~l~ 191 (719)
..+++.|.+++++++.+.+...+.. ..+. +++|+||||||||++++++++.+ +..++.++|....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 3477999999999998877542211 2334 89999999999999999999998 5678888875432
Q ss_pred h------h----c------ccc-hHHHHHHHHHHHH-hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC
Q 005014 192 S------K----L------AGE-SESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 253 (719)
Q Consensus 192 ~------~----~------~g~-~~~~l~~vf~~a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~ 253 (719)
. . . .+. .......+..... ...|.+|+|||++.+. ......|..++.....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCC
Confidence 1 0 0 011 1122222222222 2458899999999881 2345566666654432
Q ss_pred --CCcEEEEEecCCC---CCCCHHhhccCCCce-EEEeCCCChHHHHHHHHHHhcC---CCCCCcccHHHHHHHhCCC--
Q 005014 254 --RAHVIVIGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKN---MKLSDDVDLERIAKDTHGY-- 322 (719)
Q Consensus 254 --~~~vivI~atn~~---~~ld~al~r~~Rf~~-~i~i~~P~~~~R~~il~~~~~~---~~l~~~~~l~~la~~t~g~-- 322 (719)
..++.+|++++.+ +.+++.+.+ ||.. .+.+++++.++..+++...+.. .....+..+..++..+.+.
T Consensus 155 ~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (389)
T 1fnn_A 155 LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 232 (389)
T ss_dssp HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSST
T ss_pred CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccc
Confidence 1467788888877 567888766 6654 7999999999999999876542 1122344577788888422
Q ss_pred ------ccccHHHHHHHHHHHH
Q 005014 323 ------VGADLAALCTEAALQC 338 (719)
Q Consensus 323 ------~~~dl~~l~~~a~~~~ 338 (719)
..+.+..++..+...+
T Consensus 233 ~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 233 LDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp TCTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHH
Confidence 1233455555554433
No 145
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.31 E-value=3.7e-12 Score=146.01 Aligned_cols=230 Identities=20% Similarity=0.291 Sum_probs=138.7
Q ss_pred ccCCCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCC---eEEEEeccc
Q 005014 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPE 462 (719)
Q Consensus 386 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~---~~i~v~~~~ 462 (719)
..+...|+++.|.+.+++.+...+. ....++|+|||||||||+|+++|+.+.. ..+.+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 3455678999999998887766543 2247999999999999999999998742 222222111
Q ss_pred hh--h------------------------------------------------------hccCCchhhHHHHHHH-----
Q 005014 463 LL--T------------------------------------------------------MWFGESEANVREIFDK----- 481 (719)
Q Consensus 463 l~--~------------------------------------------------------~~~g~se~~i~~~f~~----- 481 (719)
.. . .++.+.......+|..
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 10 0 0000001112222210
Q ss_pred ------------------HHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCC---------------
Q 005014 482 ------------------ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------------- 528 (719)
Q Consensus 482 ------------------a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------------- 528 (719)
.....+.++||||++.+. ..+.+.|+..|+.-.
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~--------------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l 244 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS--------------LKMQQSLLTAMQEKKFPITGQSEMSSGAMV 244 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC--------------HHHHHHHHHHHHHSEECCBCSCTTSGGGGC
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhCC--------------HHHHHHHHHHHHcCcEEecccccccccccC
Confidence 112245699999999972 245566666665210
Q ss_pred ----CCCcEEEEEecCCC--CCCCcccCCCCCcc---eEEEeCCC---CHHHHHHHHHHHhccCC---CCCccC---HHH
Q 005014 529 ----AKKTVFIIGATNRP--DIIDPALLRPGRLD---QLIYIPLP---DEESRLQIFKACLRKSP---VSKDVD---LRA 590 (719)
Q Consensus 529 ----~~~~v~vi~atn~~--~~ld~allrpgRf~---~~i~~~~p---~~~~r~~Il~~~~~~~~---~~~~~d---~~~ 590 (719)
-..++.||+|||+. +.++|+|++ ||+ ..++|+.. +.+....+++.+.+... ....++ +..
T Consensus 245 ~~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~ 322 (604)
T 3k1j_A 245 RTEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEE 322 (604)
T ss_dssp BCSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHH
T ss_pred CCCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHH
Confidence 11367899999986 689999999 997 56666542 34556666654443211 111233 444
Q ss_pred HHHHc---cC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccccHHHHHHHHhhcCC
Q 005014 591 LAKYT---QG------FSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 661 (719)
Q Consensus 591 la~~~---~~------~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~~~ 661 (719)
|.+.. .| .+.+++.++++.|...|..+. ...|+.+|+..|+... .
T Consensus 323 Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~-------------------------~~~I~~edv~~A~~~~-~ 376 (604)
T 3k1j_A 323 IVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG-------------------------KKYVEREDVIEAVKMA-K 376 (604)
T ss_dssp HHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT-------------------------CSSBCHHHHHHHHHHT-C
T ss_pred HHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcC-------------------------cccccHHHHHHHHHhh-h
Confidence 44433 33 267999999999877765432 3479999999999642 3
Q ss_pred CCCHHHHHHHH
Q 005014 662 SVSDADIRKYQ 672 (719)
Q Consensus 662 sv~~~~~~~~~ 672 (719)
.+....++.|.
T Consensus 377 ~i~~~~~e~~l 387 (604)
T 3k1j_A 377 PLEKQLADWYI 387 (604)
T ss_dssp CHHHHHHHHHH
T ss_pred hhHHHHHHHHh
Confidence 34444444444
No 146
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.31 E-value=3.1e-11 Score=128.10 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=111.9
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCC------------------------eEEEEeccchhhhccCCchhhHHHHHH
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 480 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~~f~ 480 (719)
+.+..+||+||||+|||++|+++|+.+.. .++.+.+.+- +. .-+-..++.+.+
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHH
Confidence 34556999999999999999999998643 2333333210 00 112345778877
Q ss_pred HHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcc
Q 005014 481 KARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 556 (719)
Q Consensus 481 ~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~ 556 (719)
.+.. ..+.|++|||+|.+. ....+.||..|+. ...++++|++||.++.+.|++++ |+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce
Confidence 7653 346899999999973 2356888998885 34567888889999999999998 885
Q ss_pred eEEEeCCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHH
Q 005014 557 QLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRA 610 (719)
Q Consensus 557 ~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A 610 (719)
++.|++|+.++...+++... .+ .+..+..+++.+.| +.+.+.++++.+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp -EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred -eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 79999999999999998775 22 22335667766654 555555555444
No 147
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.8e-11 Score=130.87 Aligned_cols=175 Identities=22% Similarity=0.262 Sum_probs=118.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC------CeEEEEe
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------AFFFCIN 186 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~------~~~i~v~ 186 (719)
+..+.+|+++.|.++.++.+...+.. ....++||+||||||||++++++++.++ ..++.++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 34566889999999988888776542 1123599999999999999999999864 3567777
Q ss_pred chhhhhhcccchHHHHHHHHHHHH----------------hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 005014 187 GPEIMSKLAGESESNLRKAFEEAE----------------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 250 (719)
Q Consensus 187 ~~~l~~~~~g~~~~~l~~vf~~a~----------------~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~ 250 (719)
+.+..+ ...++..+.... ...+.++||||++.+.+. ....|+..++.
T Consensus 97 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----------~~~~Ll~~le~ 159 (353)
T 1sxj_D 97 ASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTMET 159 (353)
T ss_dssp SSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHHH
T ss_pred cccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------HHHHHHHHHHh
Confidence 765311 111222111111 123469999999988532 23456666665
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCC-CCcccHHHHHHHhCCC
Q 005014 251 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 322 (719)
Q Consensus 251 ~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 322 (719)
... ...+|.++|.+..+.+++++ |+. .+.+++|+.++...++...+....+ .++..+..++..+.|.
T Consensus 160 ~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~ 227 (353)
T 1sxj_D 160 YSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD 227 (353)
T ss_dssp TTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC
T ss_pred cCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 443 34555577888889999988 774 7899999999999999877644332 2334577888887764
No 148
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=1.7e-11 Score=130.48 Aligned_cols=170 Identities=20% Similarity=0.248 Sum_probs=116.4
Q ss_pred CCccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC-----CeEEEEeccch
Q 005014 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 463 (719)
Q Consensus 389 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~-----~~~i~v~~~~l 463 (719)
...|+++.|.+.+.+.|...+.. | ..+ +++|+||||||||++++++|+.+. ..++.++.++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 45688899999998888766542 2 122 399999999999999999999863 24666666542
Q ss_pred hhhccCCchhhHHHHHHHHH------hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEE
Q 005014 464 LTMWFGESEANVREIFDKAR------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 537 (719)
Q Consensus 464 ~~~~~g~se~~i~~~f~~a~------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 537 (719)
. ....++....... ...+.|+++||+|.+.. ...+.|+..|+... ....+|+
T Consensus 88 ~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~--~~~~~il 145 (340)
T 1sxj_C 88 R------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIERYT--KNTRFCV 145 (340)
T ss_dssp C------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHTT--TTEEEEE
T ss_pred c------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhcCC--CCeEEEE
Confidence 1 1223333333222 12368999999998732 23566777777543 3456778
Q ss_pred ecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcc
Q 005014 538 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQ 596 (719)
Q Consensus 538 atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~d~~~la~~~~ 596 (719)
+||.++.+.+++.+ |+. .+.|++++.++...++...++...+.- +..+..++..+.
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~ 202 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSN 202 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHT
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 88999999999998 886 889999999999999988885544321 222444554443
No 149
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.30 E-value=1.2e-11 Score=130.08 Aligned_cols=178 Identities=20% Similarity=0.217 Sum_probs=119.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEec
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCING 187 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~ 187 (719)
+..+.+|+++.|.+..++.+.+.+.. ....++||+||||||||++++++++.+ +..++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 34556789999999988888766532 122359999999999999999999986 334677887
Q ss_pred hhhhhhcccchHHHHHHHHHH-HH-hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCC
Q 005014 188 PEIMSKLAGESESNLRKAFEE-AE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 265 (719)
Q Consensus 188 ~~l~~~~~g~~~~~l~~vf~~-a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~ 265 (719)
++..+. ......+...... +. ...+.+++|||+|.+... ....|+..++.. ...+.+|.+++.
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~~--~~~~~~i~~~~~ 141 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMY--SKSCRFILSCNY 141 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-----------HHHTTGGGTSSS--SSSEEEEEEESC
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-----------HHHHHHHHHHhc--CCCCeEEEEeCC
Confidence 654321 1112222222111 01 144789999999987421 223455555442 246777888888
Q ss_pred CCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 266 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 266 ~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
+..+.+.+++ |+. .+.+++|+.++...++...+....+. +...+..++..+.|
T Consensus 142 ~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp GGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred hhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8899999987 774 79999999999999998777644332 23345666666554
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=6.6e-11 Score=124.85 Aligned_cols=178 Identities=21% Similarity=0.250 Sum_probs=119.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEec
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCING 187 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~-----~~~i~v~~ 187 (719)
+..+.+|+++.|.++.++.+...+... ...++||+||||||||++++++++.+. ..++.+++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 345667899999999999988876531 223599999999999999999999863 23677777
Q ss_pred hhhhhhcccchHHHHHHHHHH-HH-hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCC
Q 005014 188 PEIMSKLAGESESNLRKAFEE-AE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 265 (719)
Q Consensus 188 ~~l~~~~~g~~~~~l~~vf~~-a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~ 265 (719)
.+..+. ......+...... +. ...+.+++|||++.+... ....|+..++.. ...+.+|.+++.
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~~--~~~~~~i~~~~~ 149 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-----------AQQALRRTMEMF--SSNVRFILSCNY 149 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT--TTTEEEEEEESC
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-----------HHHHHHHHHHhc--CCCCeEEEEeCC
Confidence 654221 0111112221110 01 145789999999987421 234566666653 235667778888
Q ss_pred CCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCC
Q 005014 266 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321 (719)
Q Consensus 266 ~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 321 (719)
+..+.+.+++ |+. .+.+++|+.++...++...+....+. ++..+..++..+.|
T Consensus 150 ~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 150 SSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 203 (327)
T ss_dssp GGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred ccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC
Confidence 8889999987 664 78999999999999988776543321 23346677777765
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=3.5e-11 Score=126.79 Aligned_cols=174 Identities=18% Similarity=0.200 Sum_probs=121.5
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEech
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGP 188 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~ 188 (719)
..+..|+++.|.+..++.+.+.+.. ....+++|+||+|+|||+++++++..+ +..++.+++.
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 4455788999999999998887653 112249999999999999999999986 3446777765
Q ss_pred hhhhhcccchHHHHHHHHHHHH-------hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEE
Q 005014 189 EIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 261 (719)
Q Consensus 189 ~l~~~~~g~~~~~l~~vf~~a~-------~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~ 261 (719)
+.. ....++..++... ...+.+++|||++.+... ....|+..++.. ...+.+|.
T Consensus 82 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~--~~~~~~il 142 (323)
T 1sxj_B 82 DDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMELY--SNSTRFAF 142 (323)
T ss_dssp SCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHHT--TTTEEEEE
T ss_pred ccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhcc--CCCceEEE
Confidence 421 1234455555443 234789999999987531 234455556543 23566677
Q ss_pred ecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC--CCCCCcccHHHHHHHhCCCc
Q 005014 262 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGYV 323 (719)
Q Consensus 262 atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~--~~l~~~~~l~~la~~t~g~~ 323 (719)
+|+.+..+.+.+++ |+. .+.+++|+.++..+++...+.. ..+. +..+..++..+.|..
T Consensus 143 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~ 202 (323)
T 1sxj_B 143 ACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYT-NDGLEAIIFTAEGDM 202 (323)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHHTTCH
T ss_pred EeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCH
Confidence 78888889999987 664 8999999999999999876542 2332 334677777776643
No 152
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.29 E-value=3.2e-11 Score=155.86 Aligned_cols=320 Identities=16% Similarity=0.225 Sum_probs=162.4
Q ss_pred CCceEEEECCCCCChHHHHHHHHH-HhCCeEEEEechhhhhhcccchHHHHHHHHHHH---------------H-hcCCc
Q 005014 153 PPKGILLYGPPGSGKTLIARAVAN-ETGAFFFCINGPEIMSKLAGESESNLRKAFEEA---------------E-KNAPS 215 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~-~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a---------------~-~~~p~ 215 (719)
.+++|||+||||||||+++..... ..+..++.++++.-.+ ...+...++.. . .+...
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 456899999999999987765444 3455667777765332 23333333321 0 12336
Q ss_pred EEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-------CCCcEEEEEecCCC-----CCCCHHhhccCCCceEE
Q 005014 216 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------SRAHVIVIGATNRP-----NSIDPALRRFGRFDREI 283 (719)
Q Consensus 216 iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-------~~~~vivI~atn~~-----~~ld~al~r~~Rf~~~i 283 (719)
|+||||++.-..+..+. ...-.++.|++..-.-+. .-.++.+|||+|+| ..+++++.| || ..+
T Consensus 1377 VlFiDDiNmp~~D~yGt--Q~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi 1451 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGT--QRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-PIL 1451 (3245)
T ss_dssp EEEETTTTCCCCCTTSC--CHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEE
T ss_pred EEEecccCCCCcccccc--ccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEE
Confidence 99999999654443222 122233444433211111 11367899999988 468999987 77 459
Q ss_pred EeCCCChHHHHHHHHHHhcCCC-CCCccc--HHHHHHH------------------hCCCccccHHHHHHHHHH------
Q 005014 284 DIGVPDEVGRLEVLRIHTKNMK-LSDDVD--LERIAKD------------------THGYVGADLAALCTEAAL------ 336 (719)
Q Consensus 284 ~i~~P~~~~R~~il~~~~~~~~-l~~~~~--l~~la~~------------------t~g~~~~dl~~l~~~a~~------ 336 (719)
.++.|+.+....|+..+...+. ...++. ...++.. ..-|+.+|+..+++-...
T Consensus 1452 ~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~~~~~~ 1531 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMD 1531 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHhcCccc
Confidence 9999999999999765432211 111110 0111110 123466676665543221
Q ss_pred -------------HHHHhhccccccccchhhHhHhhccccchHHHHHhhccCCCCcccceeeccC-------CCcccccc
Q 005014 337 -------------QCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVP-------NVNWEDIG 396 (719)
Q Consensus 337 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~-------~~~~~~i~ 396 (719)
++.|-..+.+.-.+ .. ....+.+...+....+... +.....| ...+..+
T Consensus 1532 ~~~~~~lvrLW~HE~~RVF~DRLv~~~------Dr---~~f~~~l~~~~~~~F~~~~-~~~~~~pllf~~f~~~~Y~~v- 1600 (3245)
T 3vkg_A 1532 GCTLEGLVRLWAHEALRLFQDRLVETE------EK---EWTDKKIDEVALKHFPSVN-LDALKRPILYSNWLTKDYQPV- 1600 (3245)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTTCSSHH------HH---HHHHHHHHHHHHHHCTTSC-GGGGCSSCCCCSSCC----CC-
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCHH------HH---HHHHHHHHHHHHHhcCcch-hhhcccCcchhhhccccCccC-
Confidence 11111111110000 00 0000011111111111000 0000000 0112222
Q ss_pred ccHHHHHHhhhccccC---------------CCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEecc
Q 005014 397 GLENVKRELQETVQYP---------------VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 461 (719)
Q Consensus 397 g~~~~k~~l~~~i~~~---------------~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~ 461 (719)
..+++++.+.+.+... +.|--.+.++-..|..++||+|..||||++|+|..|..+++.++.+..+
T Consensus 1601 ~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~ 1680 (3245)
T 3vkg_A 1601 NRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVN 1680 (3245)
T ss_dssp CHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC--
T ss_pred CHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeee
Confidence 2344444443332111 1111122333345556699999999999999999999999999887654
Q ss_pred chhhhccCCchhhHHHHHHHHH-hCCCEEEEEeccc
Q 005014 462 ELLTMWFGESEANVREIFDKAR-QSAPCVLFFDELD 496 (719)
Q Consensus 462 ~l~~~~~g~se~~i~~~f~~a~-~~~p~il~iDEid 496 (719)
.-++ ..+-...++.++..|. ...|.+++|+|-+
T Consensus 1681 k~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1681 NNYK--SSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp --CC--HHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred CCCC--HHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 3211 1223466889998885 4567888888764
No 153
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.28 E-value=3e-12 Score=118.69 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=76.4
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccC
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 503 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~ 503 (719)
...++|+||||||||++|++++... +.+|+ ++++.+... ......|..+.. ++|||||||.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~~---g~l~ldei~~l~~--- 90 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQG---GTLVLSHPEHLTR--- 90 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHTT---SCEEEECGGGSCH---
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcCC---cEEEEcChHHCCH---
Confidence 3569999999999999999999986 67899 999876543 344556766643 5999999999742
Q ss_pred CCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC-------CCCcccCCCCCcc-eEEEeCCC
Q 005014 504 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLP 564 (719)
Q Consensus 504 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~-------~ld~allrpgRf~-~~i~~~~p 564 (719)
.....|+..|... ..++.+|+|||++- .+++.|.. |+. ..|++|+.
T Consensus 91 -----------~~q~~Ll~~l~~~--~~~~~~I~~t~~~~~~~~~~~~~~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 91 -----------EQQYHLVQLQSQE--HRPFRLIGIGDTSLVELAASNHIIAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp -----------HHHHHHHHHHHSS--SCSSCEEEEESSCHHHHHHHSCCCHHHHH--HHHHHEEECCCC
T ss_pred -----------HHHHHHHHHHhhc--CCCEEEEEECCcCHHHHHHcCCCCHHHHH--HhcCCEEeCCCC
Confidence 3456667766443 23467888998741 34444444 443 24666653
No 154
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.27 E-value=1e-12 Score=108.77 Aligned_cols=81 Identities=26% Similarity=0.276 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccc
Q 005014 567 ESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAE 646 (719)
Q Consensus 567 ~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (719)
++|.+||+.++++.++..++|++.||+.|+||||+||.++|++|++.|+++. ...
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-------------------------~~~ 55 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-------------------------RYV 55 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-------------------------CSE
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------------------------cCC
Confidence 4789999999999998889999999999999999999999999999999864 237
Q ss_pred ccHHHHHHHHhhc-CCCCCHHHHHHHH
Q 005014 647 IKAVHFEESMKYA-RRSVSDADIRKYQ 672 (719)
Q Consensus 647 v~~~~~~~a~~~~-~~sv~~~~~~~~~ 672 (719)
|+++||..|+..+ .|++++++++.|+
T Consensus 56 i~~~df~~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 56 ILQSDLEEAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp ECHHHHHHHHHTTCC------------
T ss_pred cCHHHHHHHHHHHHcCcCChHHHHhhC
Confidence 9999999999998 5889988988874
No 155
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.27 E-value=1.3e-10 Score=126.91 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=128.0
Q ss_pred ccccccHHHHHHhhhcc-ccCCCChhhhhhhcC-CCCcceee--ecCCCCchhHHHHHHHHHh---------CCeEEEEe
Q 005014 393 EDIGGLENVKRELQETV-QYPVEHPEKFEKFGM-SPSKGVLF--YGPPGCGKTLLAKAIANEC---------QANFISVK 459 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i-~~~~~~~~~~~~~~~-~~~~gill--~GppGtGKT~la~~la~~~---------~~~~i~v~ 459 (719)
+.+.|-+...+.|.+.+ ..... +. ..+..++| +||||+|||+|++.+++.. +..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 55667776666665544 21100 10 12346888 9999999999999999876 45677888
Q ss_pred ccchh------hh---cc-------CCchhh-HHHHHHHHH-hCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHH
Q 005014 460 GPELL------TM---WF-------GESEAN-VREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 521 (719)
Q Consensus 460 ~~~l~------~~---~~-------g~se~~-i~~~f~~a~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 521 (719)
+.... .. .+ |.+... ...+.+... ...|.+|||||++.+...+. ....++..++
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l~ 165 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTLL 165 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHHH
Confidence 64321 11 01 111112 222222222 34578999999999864311 1245666666
Q ss_pred HHhcCCC-CC--CcEEEEEecCCCC---CCC---cccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCCC---CCccCHH
Q 005014 522 TEMDGMS-AK--KTVFIIGATNRPD---IID---PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV---SKDVDLR 589 (719)
Q Consensus 522 ~~ld~~~-~~--~~v~vi~atn~~~---~ld---~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~---~~~~d~~ 589 (719)
..++... .. .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++..+..... ..+..+.
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 6665443 12 6788998988765 344 66666 66666999999999999999887653211 1223356
Q ss_pred HHHHHccC-----CCHHHHHHHHHHHHHHHHH
Q 005014 590 ALAKYTQG-----FSGADITEICQRACKYAIR 616 (719)
Q Consensus 590 ~la~~~~~-----~sg~di~~~~~~A~~~a~~ 616 (719)
.+++.+.. -.++.+..+|..|...|..
T Consensus 244 ~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 244 LISDVYGEDKGGDGSARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHH
Confidence 67777761 3567788888888776643
No 156
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.26 E-value=1.7e-11 Score=117.07 Aligned_cols=102 Identities=25% Similarity=0.418 Sum_probs=86.9
Q ss_pred CCHHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccC---CcccCcchhhHHHHHhHHhhhcCccccCCCEEEEec---C
Q 005014 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVD---DTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRG---G 74 (719)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~---~ 74 (719)
||+.+|+|+|+++||.|+|++ .+++.|++|+|+|.. +++. +.+ .+..+|+++|.. +||.+||+|.+.. .
T Consensus 69 id~~~R~N~gv~iGD~V~V~~-~~~~~A~~V~l~P~~~~~~~~~-~~~-~~~~~l~~~l~~--rpv~~Gd~v~v~~~~~~ 143 (185)
T 1cz4_A 69 IDSVMRNNCGASIGDKVKVRK-VRTEIAKKVTLAPIIRKDQRLK-FGE-GIEEYVQRALIR--RPMLEQDNISVPGLTLA 143 (185)
T ss_dssp CCHHHHHHHTCCTTCEEEEEE-ECCCBCSEEEEEEECSTTCCSC-CCS-SHHHHHHHHHTT--CEECTTCEECCSSCCCS
T ss_pred eCHHHHhccCCCCCCEEEEEE-CCCCCccEEEEecccccccccc-ccc-chHHHHHHHHCC--CcccCCCEEEEeeeccC
Confidence 789999999999999999999 579999999999985 4443 333 346799999974 7999999999863 4
Q ss_pred ce-eEEEEEEEecCCc-eEEECCCceEEecCCCcc
Q 005014 75 MR-SVEFKVIETDPPE-YCVVAPDTEIFCEGEPVR 107 (719)
Q Consensus 75 ~~-~~~f~v~~~~p~~-~~~~~~~t~~~~~~~~~~ 107 (719)
++ .+.|+|++++|.+ +++++++|.|.+..+|..
T Consensus 144 g~~~~~f~Vv~t~P~~~~v~Vt~~T~I~i~~~p~~ 178 (185)
T 1cz4_A 144 GQTGLLFKVVKTLPSKVPVEIGEETKIEIREEPAS 178 (185)
T ss_dssp SCCCCEEEEEEESSSSSCEECCTTCEEEECSCCST
T ss_pred CCeEEEEEEEEEcCCCceEEEcCCeEEEECCccch
Confidence 45 7899999999999 999999999999877763
No 157
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.26 E-value=3.1e-11 Score=133.84 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=90.2
Q ss_pred cccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eEEEEech-----hhhhh
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGP-----EIMSK 193 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~--~~i~v~~~-----~l~~~ 193 (719)
.+.|.++.++.+...+. .+.++||+||||||||++|+++|..++. ++..+++. ++.+.
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 36677776665544432 2358999999999999999999998843 45555542 33332
Q ss_pred cccchHHHHHHHHHHHHhc---CCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc---------cCCCcEEEEE
Q 005014 194 LAGESESNLRKAFEEAEKN---APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL---------KSRAHVIVIG 261 (719)
Q Consensus 194 ~~g~~~~~l~~vf~~a~~~---~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~---------~~~~~vivI~ 261 (719)
+.+..... ...|..+... .++|||||||+.+. ..+...|+..|+.. ....++ +|+
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~ 154 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRL-LVA 154 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCE-EEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhh-hhh
Confidence 22211111 1122222222 46799999998653 23456677777531 112234 466
Q ss_pred ecCCC-C--CCCHHhhccCCCceEEEeCCCCh-HHHHHHHHHH
Q 005014 262 ATNRP-N--SIDPALRRFGRFDREIDIGVPDE-VGRLEVLRIH 300 (719)
Q Consensus 262 atn~~-~--~ld~al~r~~Rf~~~i~i~~P~~-~~R~~il~~~ 300 (719)
|||++ + ...+++.+ ||...+.++.|+. +++..|+..+
T Consensus 155 ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~ 195 (500)
T 3nbx_X 155 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 195 (500)
T ss_dssp EESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCC
T ss_pred ccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcc
Confidence 66753 2 23457776 9999999999997 6788888654
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=7.6e-11 Score=126.14 Aligned_cols=178 Identities=16% Similarity=0.254 Sum_probs=114.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC------------
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 180 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~------------ 180 (719)
+..+.+|+++.|.+..++.++..+. .. ....+++|+|||||||||+++++++.+..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~---~~---------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD---QP---------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT---CT---------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh---hC---------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 3456678999999998887766541 11 12224999999999999999999996421
Q ss_pred -----------------eEEEEechhhhhhcccchHHHHHHHHHHHH--------------hcCCcEEEEccccccCCCC
Q 005014 181 -----------------FFFCINGPEIMSKLAGESESNLRKAFEEAE--------------KNAPSIIFIDEIDSIAPKR 229 (719)
Q Consensus 181 -----------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~--------------~~~p~iL~iDEid~l~~~~ 229 (719)
.++.+++.+.. ......++..++... ...|.+++|||++.+-.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-- 148 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-- 148 (354)
T ss_dssp -----------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH--
T ss_pred ecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH--
Confidence 11222221110 001112444444332 23567999999998521
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcC--CCCC
Q 005014 230 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLS 307 (719)
Q Consensus 230 ~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~--~~l~ 307 (719)
...+.|+..++.... ...+|.+|+.+..+.+.+++ |+ ..+.+++|+.++...+++..+.. ..+.
T Consensus 149 ---------~~~~~L~~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (354)
T 1sxj_E 149 ---------DAQAALRRTMEKYSK--NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLE 214 (354)
T ss_dssp ---------HHHHHHHHHHHHSTT--TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEEC
T ss_pred ---------HHHHHHHHHHHhhcC--CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 123456666665433 46677788888889999987 77 78999999999999999876543 3333
Q ss_pred CcccHHHHHHHhCCC
Q 005014 308 DDVDLERIAKDTHGY 322 (719)
Q Consensus 308 ~~~~l~~la~~t~g~ 322 (719)
.+..+..++..+.|-
T Consensus 215 ~~~~l~~i~~~~~G~ 229 (354)
T 1sxj_E 215 TKDILKRIAQASNGN 229 (354)
T ss_dssp CSHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHcCCC
Confidence 134577788877653
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.23 E-value=1.5e-10 Score=124.58 Aligned_cols=185 Identities=18% Similarity=0.252 Sum_probs=122.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe------------
Q 005014 114 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 181 (719)
Q Consensus 114 ~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~------------ 181 (719)
..+..|+++.|.+..++.+...+... ..+..++|+||+|||||++++++++.+++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 34557889999999999988877431 223468999999999999999999988642
Q ss_pred ------------EEEEechhhhhhcccchHHHHHHHHHHHH----hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 005014 182 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 245 (719)
Q Consensus 182 ------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~ 245 (719)
++.+++.. ......++.+++.+. ...+.+++|||++.+.. ...+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll 140 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 140 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHH
T ss_pred HHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHH
Confidence 12222211 011123455555543 23467999999998742 1235566
Q ss_pred HHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-CcccHHHHHHHhCCCcc
Q 005014 246 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 324 (719)
Q Consensus 246 ~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 324 (719)
..++.. ...+++|.+|+.+..+.+.+++ |+ ..+.+++|+.++...+++..++...+. +...+..++..+.|. .
T Consensus 141 ~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~-~ 214 (373)
T 1jr3_A 141 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS-L 214 (373)
T ss_dssp HHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSC-H
T ss_pred HHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCC-H
Confidence 666643 3467777788888888899887 66 789999999999999998766432222 223367777777664 3
Q ss_pred ccHHHHHHH
Q 005014 325 ADLAALCTE 333 (719)
Q Consensus 325 ~dl~~l~~~ 333 (719)
+.+..++..
T Consensus 215 r~~~~~l~~ 223 (373)
T 1jr3_A 215 RDALSLTDQ 223 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 160
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.22 E-value=2.6e-12 Score=118.73 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=84.7
Q ss_pred ccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhh
Q 005014 395 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 474 (719)
Q Consensus 395 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~ 474 (719)
+.|.+...+.+.+.+... .....+++|+||||||||++|++++.... +|+.++++++...+
T Consensus 6 ~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp --CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred ceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 455555555555544321 12345699999999999999999999888 99999998876543
Q ss_pred HHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC-CCC----Cccc
Q 005014 475 VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-DII----DPAL 549 (719)
Q Consensus 475 i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~-~~l----d~al 549 (719)
...+|+.+. .+++||||+|.+.. .....|+..|+... ..++.+|+|||++ +.+ ++.|
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~--------------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR--------------NIQTGITFIIGKAE-RCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH--------------HHHHHHHHHHHHHT-TTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH--------------HHHHHHHHHHHhCC-CCCEEEEEecCCCHHHHHhCccHHH
Confidence 456676664 35999999999743 23444555555432 3457788888874 332 2233
Q ss_pred CCCCCcc-eEEEeCCC
Q 005014 550 LRPGRLD-QLIYIPLP 564 (719)
Q Consensus 550 lrpgRf~-~~i~~~~p 564 (719)
.. ||. ..|++|+.
T Consensus 129 ~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 129 AG--LFSESVVRIPPL 142 (143)
T ss_dssp HH--HSSSEEEEECCC
T ss_pred HH--HhcCcEEeCCCC
Confidence 33 433 45677664
No 161
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=5.1e-11 Score=124.25 Aligned_cols=125 Identities=11% Similarity=0.133 Sum_probs=97.4
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh------CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCC----CEEEEEeccc
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELD 496 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~------~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~----p~il~iDEid 496 (719)
...+|||||||+|||++|+++|..+ ...++.+++++- ..+-..++.+.+.+...+ ..|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 3469999999999999999999874 346777765420 112346788888886543 4799999999
Q ss_pred hhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHH
Q 005014 497 SIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC 576 (719)
Q Consensus 497 ~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 576 (719)
.+. ....+.||..|+.. ..++++|++||.|+.+-|++++ | ++.|++|+.++....++..
T Consensus 93 ~lt--------------~~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 93 RMT--------------QQAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp GBC--------------HHHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHH
T ss_pred HhC--------------HHHHHHHHHHHhCC--CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHH
Confidence 983 23468899999854 3456777778888999999998 8 8999999999999998887
Q ss_pred h
Q 005014 577 L 577 (719)
Q Consensus 577 ~ 577 (719)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 6
No 162
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.18 E-value=6.6e-11 Score=121.30 Aligned_cols=149 Identities=21% Similarity=0.262 Sum_probs=88.2
Q ss_pred CccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC---CeEEEEechhhhhh
Q 005014 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSK 193 (719)
Q Consensus 117 ~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~---~~~i~v~~~~l~~~ 193 (719)
.+|+++.|.+..++++.+.+.... ..+.++||+||||||||++|++++..++ .+++.++|..+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 367888999998888877765422 2346899999999999999999999875 67999999876321
Q ss_pred c-----ccchHHH-------HHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---------
Q 005014 194 L-----AGESESN-------LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------- 252 (719)
Q Consensus 194 ~-----~g~~~~~-------l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~--------- 252 (719)
. .|..... ....+.. ...++|||||++.+... ....|+..++...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCCCccc
Confidence 1 1100000 0011222 23579999999988531 2345556665321
Q ss_pred CCCcEEEEEecCCC-------CCCCHHhhccCCCceEEEeCCCChHHH
Q 005014 253 SRAHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGR 293 (719)
Q Consensus 253 ~~~~vivI~atn~~-------~~ld~al~r~~Rf~~~i~i~~P~~~~R 293 (719)
....+.+|++||.+ ..+++.+.+ ||.. +.+..|...+|
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R 182 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRER 182 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGC
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhh
Confidence 12356778888864 246677766 6743 34445555444
No 163
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.15 E-value=3.3e-11 Score=111.27 Aligned_cols=112 Identities=18% Similarity=0.254 Sum_probs=76.6
Q ss_pred cccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHH
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESES 200 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~ 200 (719)
++.|.+..++++++.+.... ..+.+|+|+||||||||++|++++...+ +++.++|..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 46788888888888775422 2345799999999999999999998887 89999998775433
Q ss_pred HHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCC
Q 005014 201 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 266 (719)
Q Consensus 201 ~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~ 266 (719)
....|+.+. .++|||||++.+... ....|+..++... ...+.+|++||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~~-----------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSRN-----------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCHH-----------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCHH-----------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 344455443 469999999988532 2234555555432 3456677777643
No 164
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.12 E-value=9.2e-11 Score=108.57 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=75.8
Q ss_pred cccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccc
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE 197 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~ 197 (719)
++.|.+..++++.+.+.... ..+.+|||+||||||||++|++++... +.+++ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 46777888888877765421 234579999999999999999999886 66788 999876543
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCC
Q 005014 198 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 266 (719)
Q Consensus 198 ~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~ 266 (719)
......|..+ ..++|||||++.+.+. ....|+..+.... ..+.+|++||.+
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l~~~-----------~q~~Ll~~l~~~~--~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHLTRE-----------QQYHLVQLQSQEH--RPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGSCHH-----------HHHHHHHHHHSSS--CSSCEEEEESSC
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHCCHH-----------HHHHHHHHHhhcC--CCEEEEEECCcC
Confidence 1233445544 3469999999988532 2344556554332 345667777754
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=1.8e-09 Score=114.81 Aligned_cols=173 Identities=20% Similarity=0.296 Sum_probs=114.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC-----eEEEEec
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCING 187 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~-----~~i~v~~ 187 (719)
+..+-+|+++.|.+..++.|...+.. | .. .+++|+|||||||||+++++|+.+.. .+..+++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------G-KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 34566788999999988888777653 1 11 24999999999999999999998642 3566665
Q ss_pred hhhhhhcccchHHHHHHHHHHHHh------cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEE
Q 005014 188 PEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 261 (719)
Q Consensus 188 ~~l~~~~~g~~~~~l~~vf~~a~~------~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~ 261 (719)
++.. + ...++..+..... ..+.+++|||+|.+... ..+.|+..++... ..+.+|.
T Consensus 85 ~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~--~~~~~il 145 (340)
T 1sxj_C 85 SDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-----------AQNALRRVIERYT--KNTRFCV 145 (340)
T ss_dssp TSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHTT--TTEEEEE
T ss_pred cccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhcCC--CCeEEEE
Confidence 4421 1 1233333333221 23679999999987421 2345666666543 3455666
Q ss_pred ecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhc--CCCCCCcccHHHHHHHhCC
Q 005014 262 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHG 321 (719)
Q Consensus 262 atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~--~~~l~~~~~l~~la~~t~g 321 (719)
++|.+..+.+++++ |+. .+.+..++.++..+++...+. .+.+. +..+..++..+.|
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~-~~~~~~i~~~s~G 203 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLS-PNAEKALIELSNG 203 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBC-HHHHHHHHHHHTT
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC
Confidence 78888899999988 774 688998998888888876663 33333 2235556655544
No 166
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.09 E-value=2.9e-10 Score=118.87 Aligned_cols=145 Identities=24% Similarity=0.360 Sum_probs=89.4
Q ss_pred cccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhc---
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL--- 194 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~--- 194 (719)
++.|.+..++++.+.+.... ..+.+|||+||||||||++|++++... +.+|+.++|..+....
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 57788888888877775422 234689999999999999999999975 5678999987653211
Q ss_pred --ccc----hH---HHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---------CCCc
Q 005014 195 --AGE----SE---SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAH 256 (719)
Q Consensus 195 --~g~----~~---~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~---------~~~~ 256 (719)
.|. .. ......|+.+. .++||||||+.+... ....|+..++... ....
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-----------MQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-----------HHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-----------HHHHHHHHHhcCEeeecCCcccccCC
Confidence 110 00 01122344443 469999999988532 2344566665432 1235
Q ss_pred EEEEEecCCC-------CCCCHHhhccCCCceEEEeCCCChHHH
Q 005014 257 VIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGR 293 (719)
Q Consensus 257 vivI~atn~~-------~~ld~al~r~~Rf~~~i~i~~P~~~~R 293 (719)
+.+|++||.+ ..+++.|.. ||. .+.+..|...+|
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR 178 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQR 178 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGG
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHh
Confidence 7788888865 134455554 553 344444544443
No 167
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.04 E-value=2.1e-10 Score=108.90 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=84.4
Q ss_pred CCHHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccCCc-ccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCc-eeE
Q 005014 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDT-IEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGM-RSV 78 (719)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~ 78 (719)
||+.+|+|+|+++||.|.|+++.+++.|++|+|+|.+.. .+ + .+....||+++|..+.|+|.+||+|.+.-.+ ..+
T Consensus 74 Id~~~r~n~gv~~Gd~V~V~~~~~~~~A~~V~laP~~~dD~e-i-~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i 151 (179)
T 1wlf_A 74 INRQVGQKLGLSSGDQVFLRPCSHVVSCQQVEVEPLSADDWE-I-LELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYI 151 (179)
T ss_dssp EEHHHHHHTTCCTTCEEEEEECSCCEECSEEEEEESSHHHHH-H-HHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEE
T ss_pred ECHHHHhHCCCCCCCEEEEEECCCCccceEEEEEcCCcCCeE-E-ehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEE
Confidence 688999999999999999999888999999999999521 11 1 1233568999999889999999999986333 678
Q ss_pred EEEEEEecC-CceEEECCCceEEecC
Q 005014 79 EFKVIETDP-PEYCVVAPDTEIFCEG 103 (719)
Q Consensus 79 ~f~v~~~~p-~~~~~~~~~t~~~~~~ 103 (719)
.|+|+++.| .+++.++++|++.+..
T Consensus 152 ~f~V~~~~P~~~~v~It~~TeI~v~p 177 (179)
T 1wlf_A 152 FIQIVTLMPAAPYGRLETNTKLLIQP 177 (179)
T ss_dssp EEEEEEEESCCSSEECCTTCEEEECC
T ss_pred EEEEEEeeCCCCeEEECCCcEEEEec
Confidence 999999999 8999999999998753
No 168
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.01 E-value=1.2e-08 Score=108.22 Aligned_cols=163 Identities=14% Similarity=0.189 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----------------------
Q 005014 125 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------------------- 181 (719)
Q Consensus 125 ~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~----------------------- 181 (719)
+++.++.+...+.. -..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 35555666655532 1234569999999999999999999987642
Q ss_pred -EEEEechhhhhhcccchHHHHHHHHHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCc
Q 005014 182 -FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 256 (719)
Q Consensus 182 -~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~ 256 (719)
++.+++.+- .....-..++.+++.+.. ....|++|||+|.+.. ...+.|+..++.. ...
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep--~~~ 138 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEP--PAE 138 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSC--CTT
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCC--CCC
Confidence 223322100 011123456677666542 3467999999998842 1235677777653 346
Q ss_pred EEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCC
Q 005014 257 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGY 322 (719)
Q Consensus 257 vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~ 322 (719)
+++|.+|+.++.+.+.+++ |+ ..+.+++|+.++..+++.... .+ ++..+..++..+.|.
T Consensus 139 ~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~ 197 (334)
T 1a5t_A 139 TWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGS 197 (334)
T ss_dssp EEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTC
T ss_pred eEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCC
Confidence 7777788888999999998 76 579999999999999887664 12 233456677776654
No 169
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=5.1e-10 Score=127.39 Aligned_cols=131 Identities=23% Similarity=0.263 Sum_probs=83.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEE----echhhhhhc-----ccchHHHHHHHHHHHHhcCCcEEEEccccc
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCI----NGPEIMSKL-----AGESESNLRKAFEEAEKNAPSIIFIDEIDS 224 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~v----~~~~l~~~~-----~g~~~~~l~~vf~~a~~~~p~iL~iDEid~ 224 (719)
..++||+||||||||++|+++|..++..++.. ++..+.... .+..... ...+..+ ..+++||||++.
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~G~l~~A---~~gil~IDEid~ 402 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLE-AGALVLA---DGGIAVIDEIDK 402 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEE-ECHHHHH---SSSEECCTTTTC
T ss_pred CcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccccccc-CCeeEec---CCCcEEeehhhh
Confidence 34899999999999999999999987654432 222222111 1110000 0112222 346999999998
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCcEEEEEecCCCC-------------CCCHHhhccCCCc
Q 005014 225 IAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-------------SIDPALRRFGRFD 280 (719)
Q Consensus 225 l~~~~~~~~~~~~~~v~~~L~~~l~~~~-----------~~~~vivI~atn~~~-------------~ld~al~r~~Rf~ 280 (719)
+.+. ....|+..|+... ...++.||+|||++. .+++++.+ ||+
T Consensus 403 l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFD 469 (595)
T 3f9v_A 403 MRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFD 469 (595)
T ss_dssp CCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCS
T ss_pred CCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCe
Confidence 7532 2355666665321 124678999999876 78889988 997
Q ss_pred e-EEEeCCCChHHHHHHHHHHhc
Q 005014 281 R-EIDIGVPDEVGRLEVLRIHTK 302 (719)
Q Consensus 281 ~-~i~i~~P~~~~R~~il~~~~~ 302 (719)
. .+..+.|+.+ ...|++....
T Consensus 470 l~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 470 LIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp CCEEECCTTHHH-HHHHHHHHHT
T ss_pred EEEEeCCCCCHH-HHHHHHHHHH
Confidence 4 5566777777 7777766554
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.95 E-value=2e-09 Score=103.33 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=60.8
Q ss_pred CCCCccccccc----hHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh----CCeEEEE
Q 005014 114 LDEVGYDDVGG----VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCI 185 (719)
Q Consensus 114 ~~~~~~~~i~G----~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l----~~~~i~v 185 (719)
+.+.+|++..+ ....++.+++++. ++.+.++.+++|+||||||||||++++++.+ |..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 34456666554 3334444444432 3345567899999999999999999999887 5566677
Q ss_pred echhhhhhcccchHHH-HHHHHHHHHhcCCcEEEEcccccc
Q 005014 186 NGPEIMSKLAGESESN-LRKAFEEAEKNAPSIIFIDEIDSI 225 (719)
Q Consensus 186 ~~~~l~~~~~g~~~~~-l~~vf~~a~~~~p~iL~iDEid~l 225 (719)
+..++........... ....++. -..|.+|+|||++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 7766654322111000 0011222 235789999999754
No 171
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.93 E-value=3.4e-10 Score=116.70 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=80.5
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHhCC--eEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhc
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 500 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~ 500 (719)
|+.+.+.++|+||||||||+||.++|...+. .|+.+...+.++.+....+..+..+++...... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 4455555899999999999999999987543 466664355555554445566666777666654 999999999865
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccc
Q 005014 501 QRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPAL 549 (719)
Q Consensus 501 ~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~al 549 (719)
.+... ...+...+.+.+++..|+++....++.+|++|| |...|+++
T Consensus 197 ~~~~~--s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGN--TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc--cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 44321 111223466778888887765555678888998 66677764
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=1.5e-08 Score=105.54 Aligned_cols=142 Identities=11% Similarity=0.173 Sum_probs=98.9
Q ss_pred chHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEechhhhhhcccc
Q 005014 124 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET------GAFFFCINGPEIMSKLAGE 197 (719)
Q Consensus 124 G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l------~~~~i~v~~~~l~~~~~g~ 197 (719)
|.++.++.|+..+... . ...+||+||||+|||++++++|+.+ ...++.+++.. . ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CC
Confidence 4556667777766531 1 3579999999999999999999864 23566666532 0 12
Q ss_pred hHHHHHHHHHHHHhc----CCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHh
Q 005014 198 SESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 273 (719)
Q Consensus 198 ~~~~l~~vf~~a~~~----~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al 273 (719)
.-..++.+++.+... ...|+||||+|.+.. ...+.|+..++.. ...+++|.+|+.++.+.+++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhCC--CCCeEEEEEECChHhChHHH
Confidence 234577777776532 246999999998842 1245677777753 34566666778888999999
Q ss_pred hccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 274 RRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 274 ~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
++ | .+.+++|+.++....+....
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 98 6 78899999999888887665
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.89 E-value=3.2e-08 Score=107.76 Aligned_cols=203 Identities=13% Similarity=0.120 Sum_probs=120.0
Q ss_pred cccccchHHHHHHHHHHH-HcccCChhhHhhhCCCCCceEEE--ECCCCCChHHHHHHHHHHh---------CCeEEEEe
Q 005014 119 YDDVGGVRKQMAQIRELV-ELPLRHPQLFKSIGVKPPKGILL--YGPPGSGKTLIARAVANET---------GAFFFCIN 186 (719)
Q Consensus 119 ~~~i~G~~~~~~~l~~~~-~~~l~~~~~~~~l~~~~~~~vLL--~GppGtGKTtla~~la~~l---------~~~~i~v~ 186 (719)
.+.+.|.++++++|.+.+ ......+ -..+..++| +||+|+|||++++.+++.+ +..+++++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 367899999999998877 4321110 023457999 9999999999999999876 45677888
Q ss_pred chhh------hhhc----------ccc-hHHHHHHHHHHHH-hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHh
Q 005014 187 GPEI------MSKL----------AGE-SESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 248 (719)
Q Consensus 187 ~~~l------~~~~----------~g~-~~~~l~~vf~~a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l 248 (719)
|... .... .+. .......+.+... ...|.+|+|||++.+....... ...+..++..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-----~~~l~~l~~~~ 168 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRVH 168 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-----HHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-----hHHHHHHHHHH
Confidence 6421 1110 011 1111222222222 3558899999999886431111 12334444444
Q ss_pred hcccC-C--CcEEEEEecCCCC---CCC---HHhhccCCCceEEEeCCCChHHHHHHHHHHhcCC---CCCCcccHHHHH
Q 005014 249 DGLKS-R--AHVIVIGATNRPN---SID---PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM---KLSDDVDLERIA 316 (719)
Q Consensus 249 ~~~~~-~--~~vivI~atn~~~---~ld---~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~---~l~~~~~l~~la 316 (719)
..... . .++.+|++++.++ .++ +.+.+ ++...+.+++++.++..+++....... .......+..++
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 43321 2 5788887877554 223 44444 565669999999999999997654311 112333467777
Q ss_pred HHhC------CCccccHHHHHHHHHH
Q 005014 317 KDTH------GYVGADLAALCTEAAL 336 (719)
Q Consensus 317 ~~t~------g~~~~dl~~l~~~a~~ 336 (719)
..+. |. ...+..++..+..
T Consensus 247 ~~~~~~~~~~G~-p~~~~~l~~~a~~ 271 (412)
T 1w5s_A 247 DVYGEDKGGDGS-ARRAIVALKMACE 271 (412)
T ss_dssp HHHCGGGTSCCC-HHHHHHHHHHHHH
T ss_pred HHHHHhccCCCc-HHHHHHHHHHHHH
Confidence 7777 64 2344555555443
No 174
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.85 E-value=6.6e-09 Score=99.61 Aligned_cols=105 Identities=21% Similarity=0.177 Sum_probs=62.9
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh----CCeEEEEeccchhhhccCCchh-hHHHHHHHHHhCCCEEEEEeccch
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDS 497 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~----~~~~i~v~~~~l~~~~~g~se~-~i~~~f~~a~~~~p~il~iDEid~ 497 (719)
....+.+++|+||||||||||++++++.+ +..++.++..++...+...... ....+++.. ..|.+|+|||++.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~ 111 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGS 111 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCC
Confidence 33445679999999999999999999886 5566777777765443211000 001222222 2467999999985
Q ss_pred hhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005014 498 IATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 542 (719)
Q Consensus 498 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~ 542 (719)
... +......+..++.... . .+..+|.|||.+
T Consensus 112 ~~~---------~~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~ 143 (180)
T 3ec2_A 112 ERL---------SDWQRELISYIITYRY---N-NLKSTIITTNYS 143 (180)
T ss_dssp SCC---------CHHHHHHHHHHHHHHH---H-TTCEEEEECCCC
T ss_pred CcC---------CHHHHHHHHHHHHHHH---H-cCCCEEEEcCCC
Confidence 311 1233445555554432 1 124567788875
No 175
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.82 E-value=2e-08 Score=130.15 Aligned_cols=126 Identities=19% Similarity=0.292 Sum_probs=88.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCch
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 234 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~ 234 (719)
.+..+.||+|||||.+++.+|+.+|..++.++|++-++ ...+..+|.-+... .+..++||++.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEE------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH-------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCH-------
Confidence 46789999999999999999999999999999976443 23566667665543 46889999998732
Q ss_pred HHHHHHHHHHHHHhh-------------c--ccCCCcEEEEEecCC----CCCCCHHhhccCCCceEEEeCCCChHHHHH
Q 005014 235 EVERRIVSQLLTLMD-------------G--LKSRAHVIVIGATNR----PNSIDPALRRFGRFDREIDIGVPDEVGRLE 295 (719)
Q Consensus 235 ~~~~~v~~~L~~~l~-------------~--~~~~~~vivI~atn~----~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 295 (719)
++...+..++..... + +.-.....++.|.|+ ...++..++. || +.+.+..||.+.-.+
T Consensus 671 ~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~e 747 (3245)
T 3vkg_A 671 RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQ 747 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHH
Confidence 222222233322111 1 222345667778885 3578999997 66 679999999988888
Q ss_pred HH
Q 005014 296 VL 297 (719)
Q Consensus 296 il 297 (719)
|+
T Consensus 748 i~ 749 (3245)
T 3vkg_A 748 VM 749 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.80 E-value=2.7e-09 Score=99.00 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=45.1
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchh
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 498 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l 498 (719)
...++|+||+|+|||+|++++++.. +...+.+++.++... +....|.+++|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCcccc
Confidence 4569999999999999999999987 666888888776543 11234679999999875
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.80 E-value=5.2e-09 Score=97.08 Aligned_cols=97 Identities=14% Similarity=0.337 Sum_probs=63.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCCCC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 229 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~ 229 (719)
++..++|+||+|+|||||++++++.+ |...+++++.++... .....|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 56789999999999999999999987 666788887766533 112357899999998754221
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCc-EEEEEecCCCCCCC--HHhhc
Q 005014 230 EKTHGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSID--PALRR 275 (719)
Q Consensus 230 ~~~~~~~~~~v~~~L~~~l~~~~~~~~-vivI~atn~~~~ld--~al~r 275 (719)
...|..+++....... ++++++...|..+. +.+++
T Consensus 100 -----------~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S 137 (149)
T 2kjq_A 100 -----------QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT 137 (149)
T ss_dssp -----------HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH
T ss_pred -----------HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH
Confidence 1334444444333323 35555544565443 66665
No 178
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.79 E-value=1.9e-09 Score=115.17 Aligned_cols=119 Identities=20% Similarity=0.262 Sum_probs=80.4
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhc-c
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT-Q 501 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~-~ 501 (719)
+++++..++|+||||||||||++++++..+..++.+..++-. ....+..+| ...++|+||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~~------q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVAI------DQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGGT------TCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHhc------chhHHHHHHHHHHHHHH
Confidence 566667799999999999999999999987766554433210 011122223 235789999999875 3
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCC
Q 005014 502 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 563 (719)
Q Consensus 502 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~ 563 (719)
|+...+ . .. .....+...+||. +.|+++||+++.+ +++++|||++..++..+
T Consensus 233 r~l~~~--~-~~-~~~~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSG--Q-GI-NNLDNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCC--S-HH-HHHHTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhcccc--C-cc-hHHHHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 322111 1 11 1234556667764 4578899999999 89999999998887755
No 179
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.76 E-value=2.9e-08 Score=113.63 Aligned_cols=52 Identities=27% Similarity=0.440 Sum_probs=42.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 113 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 113 ~~~~~~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
.+++-.++++.|.+..++.+...+. .+.+++|+|||||||||+++++++.++
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4556678899999988877766553 235899999999999999999999875
No 180
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.72 E-value=1.1e-08 Score=84.96 Aligned_cols=76 Identities=34% Similarity=0.633 Sum_probs=67.4
Q ss_pred eCCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccc
Q 005014 285 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVT 364 (719)
Q Consensus 285 i~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 364 (719)
-.+|+.++|.+||+.+++++++..++++..+++.|+||+|+||..+|++|++.++++. ...++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~ 70 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVT 70 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEEC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCC
Confidence 3589999999999999999998889999999999999999999999999999998764 24578
Q ss_pred hHHHHHhhccCCC
Q 005014 365 DEHFKTALGTSNP 377 (719)
Q Consensus 365 ~~~~~~al~~~~p 377 (719)
.+||..|+..+.|
T Consensus 71 ~~df~~Al~~v~p 83 (86)
T 2krk_A 71 QEDFEMAVAKVMQ 83 (86)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcc
Confidence 8999999877654
No 181
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.69 E-value=7.5e-07 Score=94.55 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=111.8
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh-----h
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----T 465 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-----~ 465 (719)
....+.|-+...+.|.+ +.. +.++++||+|+|||+|++.+++..+..++.+++.... +
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34556677666666665 421 3699999999999999999999887777788765420 0
Q ss_pred ---------------------------hccC----C----------chhhHHHHHHHHHhC--CCEEEEEeccchhhccc
Q 005014 466 ---------------------------MWFG----E----------SEANVREIFDKARQS--APCVLFFDELDSIATQR 502 (719)
Q Consensus 466 ---------------------------~~~g----~----------se~~i~~~f~~a~~~--~p~il~iDEid~l~~~r 502 (719)
...| . ....+..+++..... .|.+|||||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 0000 0 012345555554442 38999999999986410
Q ss_pred CCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC---------CCcccCCCCCcceEEEeCCCCHHHHHHHH
Q 005014 503 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---------IDPALLRPGRLDQLIYIPLPDEESRLQIF 573 (719)
Q Consensus 503 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~---------ld~allrpgRf~~~i~~~~p~~~~r~~Il 573 (719)
+......+..+... . .++.+|+|++.... ....+ .||+...+.+++.+.++..+++
T Consensus 154 -------~~~~~~~l~~~~~~---~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 154 -------GVNLLPALAYAYDN---L---KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp -------TCCCHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHH
T ss_pred -------chhHHHHHHHHHHc---C---CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHH
Confidence 01123344444333 1 24555666554221 11122 2477789999999999999999
Q ss_pred HHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHH
Q 005014 574 KACLRKSPVSKDVDLRALAKYTQGFSGADITEICQR 609 (719)
Q Consensus 574 ~~~~~~~~~~~~~d~~~la~~~~~~sg~di~~~~~~ 609 (719)
+..+...+...+ +...+...+.|+. .-+..++..
T Consensus 219 ~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHHH
Confidence 887754333322 2377888888754 445555543
No 182
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.68 E-value=2.6e-08 Score=81.23 Aligned_cols=73 Identities=36% Similarity=0.672 Sum_probs=65.2
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccch
Q 005014 286 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTD 365 (719)
Q Consensus 286 ~~P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 365 (719)
|+|+.++|.+||+.+++++++..++++..++..|+||+|+||..+|++|++.++++. ...++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCH
Confidence 689999999999999999998888999999999999999999999999999998763 235788
Q ss_pred HHHHHhhccC
Q 005014 366 EHFKTALGTS 375 (719)
Q Consensus 366 ~~~~~al~~~ 375 (719)
+||..|+..+
T Consensus 64 ~d~~~Al~~v 73 (78)
T 3kw6_A 64 EDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888654
No 183
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.65 E-value=2.4e-08 Score=97.12 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=78.9
Q ss_pred ceeeecCCCCchhHHHHHHHHHh--------C-CeEEEEeccchhhhcc----------CCchh--hHHHHHHHH--HhC
Q 005014 429 GVLFYGPPGCGKTLLAKAIANEC--------Q-ANFISVKGPELLTMWF----------GESEA--NVREIFDKA--RQS 485 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~--------~-~~~i~v~~~~l~~~~~----------g~se~--~i~~~f~~a--~~~ 485 (719)
-.|++|+||||||++|..++... + .+++..+..++.-.+. ..... ....+++.+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 47899999999999998865442 3 4455555555543221 11111 112333331 223
Q ss_pred CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCC
Q 005014 486 APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 565 (719)
Q Consensus 486 ~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~ 565 (719)
..+||+|||++.+.+.|.... . ..+ ++..|.... ...+-||.+|+.++.||.++.. |++.++++++|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~----e-~~r----ll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGS----K-IPE----NVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTC----C-CCH----HHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred CceEEEEEChhhhccCccccc----h-hHH----HHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 457999999999987653221 1 123 444444332 3345667788889999999887 999999998864
Q ss_pred HH
Q 005014 566 EE 567 (719)
Q Consensus 566 ~~ 567 (719)
..
T Consensus 155 ~~ 156 (199)
T 2r2a_A 155 MG 156 (199)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 184
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.65 E-value=1.3e-08 Score=104.89 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=68.3
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhCCe--EEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCC
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~ 227 (719)
|+.++..++|+||||||||+|+..+|...+.. |+.....+..+.+....+..+..+++...... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 45666778999999999999999999875433 45542233333333445555666666655544 999999999865
Q ss_pred CCCCC--chHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHh
Q 005014 228 KREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 273 (719)
Q Consensus 228 ~~~~~--~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al 273 (719)
..... .+.. .+.+.+++..+..+....++.+|.++| +...++++
T Consensus 197 ~~~~~s~~G~v-~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGI-SRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------C-CHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccchH-HHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 43221 1111 122334444444333334556777777 44445443
No 185
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.64 E-value=4.6e-07 Score=101.91 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=63.5
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchh----hh--ccC----------------------Cc
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----TM--WFG----------------------ES 471 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~----~~--~~g----------------------~s 471 (719)
++.+..-++|.||||+|||||++.++... +.+.+.+...+-. .. ..| ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45555569999999999999999999764 3344555433210 00 001 01
Q ss_pred hhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005014 472 EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 542 (719)
Q Consensus 472 e~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~ 542 (719)
....+.+...+....|.++++|=+..+... . . +....+.+..++..+.. .++.+|.+|...
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~---~-~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG--V---S-NNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS--S---C-HHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh--C---C-hHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 234556667777788999999955555321 0 0 01134455556666542 234555555544
No 186
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.63 E-value=6.4e-08 Score=104.51 Aligned_cols=167 Identities=22% Similarity=0.320 Sum_probs=104.3
Q ss_pred cceeeecCCCCchhHHHHHHHHHhC---CeEEEEeccchhh-------------hccCCchhhHHHHHHHHHhCCCEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT-------------MWFGESEANVREIFDKARQSAPCVLF 491 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~---~~~i~v~~~~l~~-------------~~~g~se~~i~~~f~~a~~~~p~il~ 491 (719)
..++|+|++|||||++|+++..... .+|+.++|+.+.. .|.|.... ....|..|.. .+||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlf 236 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELADG---GTLF 236 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeCCC---cEEE
Confidence 4589999999999999999998864 6899999987532 12222211 1235666654 4999
Q ss_pred EeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC-----CCC----CcEEEEEecCCC-------CCCCcccCCCCCc
Q 005014 492 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SAK----KTVFIIGATNRP-------DIIDPALLRPGRL 555 (719)
Q Consensus 492 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~~----~~v~vi~atn~~-------~~ld~allrpgRf 555 (719)
||||+.+. ..+...||..|+.. .+. .++.||+|||+. ..+.+.|.- |+
T Consensus 237 ldei~~l~--------------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl 300 (387)
T 1ny5_A 237 LDEIGELS--------------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RL 300 (387)
T ss_dssp EESGGGCC--------------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH
T ss_pred EcChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hh
Confidence 99999973 34556666666531 111 257799999973 223333333 44
Q ss_pred c-eEEEeCCCC--HHHHHHHHHHHhcc----CCCC-CccCHHHHHHHc-cCCCH--HHHHHHHHHHHHHH
Q 005014 556 D-QLIYIPLPD--EESRLQIFKACLRK----SPVS-KDVDLRALAKYT-QGFSG--ADITEICQRACKYA 614 (719)
Q Consensus 556 ~-~~i~~~~p~--~~~r~~Il~~~~~~----~~~~-~~~d~~~la~~~-~~~sg--~di~~~~~~A~~~a 614 (719)
. ..|++|+.. .++...++++++++ .... ..++-+.+.... ..|.| ++|+++++.|+..+
T Consensus 301 ~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 301 GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 3 346666653 25666666666643 2222 234444444433 44666 69999999988754
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.62 E-value=3.9e-08 Score=96.03 Aligned_cols=69 Identities=33% Similarity=0.434 Sum_probs=48.6
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhccCC-chhhHHHHHHHHHhCCCEEEEEeccchh
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSI 498 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~il~iDEid~l 498 (719)
.+++|+||||||||+||++++..+ +.+++.++++++...+... ....+..++...... .+|||||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKV--PVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHS--SEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCC
Confidence 679999999999999999999987 5678888888776543211 111123344444433 59999999765
No 188
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.58 E-value=7.6e-08 Score=80.32 Aligned_cols=74 Identities=30% Similarity=0.476 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHH
Q 005014 289 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHF 368 (719)
Q Consensus 289 ~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 368 (719)
|.++|.+||+.+++++++..++++..+++.|+||+|+||..+|++|++.++++.. ..++.+||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHHH
Confidence 5789999999999999999899999999999999999999999999999987642 34789999
Q ss_pred HHhhccCCCCc
Q 005014 369 KTALGTSNPSA 379 (719)
Q Consensus 369 ~~al~~~~ps~ 379 (719)
..|+..+.++.
T Consensus 65 ~~Al~~v~~~~ 75 (88)
T 3vlf_B 65 LKAVDKVISGY 75 (88)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhcCc
Confidence 99998876653
No 189
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.57 E-value=8.1e-08 Score=103.44 Aligned_cols=143 Identities=18% Similarity=0.154 Sum_probs=82.9
Q ss_pred ccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHH-HHHhCCeEEEEec--c---chhhhc-
Q 005014 395 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI-ANECQANFISVKG--P---ELLTMW- 467 (719)
Q Consensus 395 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~l-a~~~~~~~i~v~~--~---~l~~~~- 467 (719)
|.|++.+|+.|.-.+...... .+..-++||.|+||| ||++|+++ +..+.... .+.+ + .+....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEE
Confidence 678888888876554332111 111235999999999 99999999 76654322 2221 1 111110
Q ss_pred --cCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC-------CCCCcEEEEEe
Q 005014 468 --FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------SAKKTVFIIGA 538 (719)
Q Consensus 468 --~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-------~~~~~v~vi~a 538 (719)
.| ..-.- -.+..|.. .++|+|||+.+- ......|+..|+.- .-..++.||+|
T Consensus 285 ~~tG-~~~~~-G~l~LAdg---Gvl~lDEIn~~~--------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA 345 (506)
T 3f8t_A 285 EDRG-WALRA-GAAVLADG---GILAVDHLEGAP--------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAA 345 (506)
T ss_dssp ESSS-EEEEE-CHHHHTTT---SEEEEECCTTCC--------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEE
T ss_pred cCCC-cccCC-CeeEEcCC---CeeehHhhhhCC--------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEE
Confidence 01 10011 12233433 499999998862 45677777777632 11235889999
Q ss_pred cCCCC-----------CCCcccCCCCCcceEEE-eCCCCHHH
Q 005014 539 TNRPD-----------IIDPALLRPGRLDQLIY-IPLPDEES 568 (719)
Q Consensus 539 tn~~~-----------~ld~allrpgRf~~~i~-~~~p~~~~ 568 (719)
+|..+ .|.++++. |||..+. .+.|+.+.
T Consensus 346 ~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 346 INPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp ECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred eCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 99875 67789998 9997654 44565443
No 190
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.53 E-value=9.5e-08 Score=93.22 Aligned_cols=70 Identities=24% Similarity=0.429 Sum_probs=46.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhcccchH-HHHHHHHHHHHhcCCcEEEEccccccC
Q 005014 155 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
.+++|+||||||||+++++++..+ +..++.+++.++......... ..+...++... .+.+|+|||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 789999999999999999999987 567788888776543221100 01122233322 23599999997654
No 191
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.50 E-value=5.9e-06 Score=87.33 Aligned_cols=179 Identities=18% Similarity=0.200 Sum_probs=103.9
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhh-------
Q 005014 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------- 191 (719)
Q Consensus 119 ~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~------- 191 (719)
-+.+.|-++++++|.+.+.. +..++|+||+|+|||+|++.+++..+ .+++++....
T Consensus 11 ~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred hHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 34578889988888877642 14799999999999999999999886 5666654321
Q ss_pred -----h---hcc-------------------------cchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHH
Q 005014 192 -----S---KLA-------------------------GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 238 (719)
Q Consensus 192 -----~---~~~-------------------------g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~ 238 (719)
. ... ......+..+.+.+....|.+|+|||++.+........ .
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~----~ 149 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGG----K 149 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTT----H
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccch----h
Confidence 0 000 00111122222222222489999999998864110000 1
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEecCCCC---------CCCHHhhccCCCceEEEeCCCChHHHHHHHHHHhcCCCCC-C
Q 005014 239 RIVSQLLTLMDGLKSRAHVIVIGATNRPN---------SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-D 308 (719)
Q Consensus 239 ~v~~~L~~~l~~~~~~~~vivI~atn~~~---------~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~~~~~l~-~ 308 (719)
.+...|..+++.. .++.+|.++.... .....+ .+|+...+.+++.+.++-.+++...+...... .
T Consensus 150 ~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~ 224 (350)
T 2qen_A 150 ELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP 224 (350)
T ss_dssp HHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC
T ss_pred hHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2333344444432 2444444443211 111111 24666789999999999999887665432221 2
Q ss_pred cccHHHHHHHhCCCc
Q 005014 309 DVDLERIAKDTHGYV 323 (719)
Q Consensus 309 ~~~l~~la~~t~g~~ 323 (719)
...+..+...+.|+-
T Consensus 225 ~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 225 ENEIEEAVELLDGIP 239 (350)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCCH
Confidence 334677778888864
No 192
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.50 E-value=4.5e-06 Score=88.30 Aligned_cols=188 Identities=19% Similarity=0.250 Sum_probs=108.8
Q ss_pred ccccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh------
Q 005014 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------ 464 (719)
Q Consensus 391 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~------ 464 (719)
.-..+.|-+...+.|.+.+.. + +.++++||+|+|||+|++.+++..+ .+.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 344566777766666654421 1 4699999999999999999998875 6666654321
Q ss_pred ------h---hccCC---------------------chhhHHHHHHH----HHhCCCEEEEEeccchhhcccCCCCCCCC
Q 005014 465 ------T---MWFGE---------------------SEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSVGDAG 510 (719)
Q Consensus 465 ------~---~~~g~---------------------se~~i~~~f~~----a~~~~p~il~iDEid~l~~~r~~~~~~~~ 510 (719)
. ..++. ....+..+++. +....|.+|||||++.+.....
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~------- 145 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS------- 145 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-------
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-------
Confidence 0 00110 01123333332 3222389999999999864110
Q ss_pred CchHHHHHHHHHHhcCCCCCCcEEEEEecCCC---C------CCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhccCC
Q 005014 511 GAADRVLNQLLTEMDGMSAKKTVFIIGATNRP---D------IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP 581 (719)
Q Consensus 511 ~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~---~------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~ 581 (719)
.....++..|-..++.. .++.+|.|++.. . .....+. ||+...+++++.+.++..++++..+...+
T Consensus 146 ~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 146 RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 01123333333333332 245555555432 1 1122232 47777999999999999999988776544
Q ss_pred CC-CccCHHHHHHHccCCCHHHHHHHHH
Q 005014 582 VS-KDVDLRALAKYTQGFSGADITEICQ 608 (719)
Q Consensus 582 ~~-~~~d~~~la~~~~~~sg~di~~~~~ 608 (719)
.. .+..+..+...+.|+. .-+..++.
T Consensus 221 ~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 32 2234566777777754 44555554
No 193
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.48 E-value=2.2e-07 Score=99.48 Aligned_cols=166 Identities=22% Similarity=0.332 Sum_probs=102.5
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCC--eEEEEeccchhhh-------------ccCCchhhHHHHHHHHHhCCCEEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTM-------------WFGESEANVREIFDKARQSAPCVLFF 492 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~~~-------------~~g~se~~i~~~f~~a~~~~p~il~i 492 (719)
..++++|++||||+++|+++....+. .|+.++|..+-.. |.|.... -...|+.|.. ..||+
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a~~---gtlfl 228 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELADQ---GTLFL 228 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHTTT---SEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhcCC---CeEEe
Confidence 34999999999999999999988754 3999999865321 1121111 1234555644 38999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcCC-----CCC----CcEEEEEecCCC-------CCCCcccCCCCCcc
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SAK----KTVFIIGATNRP-------DIIDPALLRPGRLD 556 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~~----~~v~vi~atn~~-------~~ld~allrpgRf~ 556 (719)
|||+.+. ..+...||..|+.- .+. -++-+|+|||+. ..+.+.|.. |+.
T Consensus 229 dei~~l~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~ 292 (368)
T 3dzd_A 229 DEVGELD--------------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLS 292 (368)
T ss_dssp ETGGGSC--------------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT
T ss_pred cChhhCC--------------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhC
Confidence 9999973 34566677766532 111 146789999963 123333443 444
Q ss_pred -eEEEeCCCCH--HHHHHHHHHHhccC----CCC-CccCHHHHHHHc-cCCCH--HHHHHHHHHHHHH
Q 005014 557 -QLIYIPLPDE--ESRLQIFKACLRKS----PVS-KDVDLRALAKYT-QGFSG--ADITEICQRACKY 613 (719)
Q Consensus 557 -~~i~~~~p~~--~~r~~Il~~~~~~~----~~~-~~~d~~~la~~~-~~~sg--~di~~~~~~A~~~ 613 (719)
..|++|+... ++...++++++++. ... ..++-+.+.... ..|.| ++++++++.|+..
T Consensus 293 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 293 VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 2577887755 66677777766432 211 234444444332 23555 8888888888764
No 194
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.46 E-value=7.3e-08 Score=100.65 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=47.1
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhC----CeEEEEeccchhhhccCCc-hhhHHHHHHHHHhCCCEEEEEeccchh
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSI 498 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~----~~~i~v~~~~l~~~~~g~s-e~~i~~~f~~a~~~~p~il~iDEid~l 498 (719)
..+++|+||||||||+||+++|..+. .+++.++.+++...+.+.. ......++..... +.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN--VPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT--SSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 46799999999999999999998754 6788888887765443211 1112222333332 359999999764
No 195
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.45 E-value=4.4e-06 Score=88.55 Aligned_cols=178 Identities=17% Similarity=0.207 Sum_probs=103.3
Q ss_pred ccccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhh------
Q 005014 118 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------ 191 (719)
Q Consensus 118 ~~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~------ 191 (719)
..+.+.|-+++++.|.+ +.. ..++|+||+|+|||+|++.+++..+..++++++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34567888888887776 421 3799999999999999999999987777777765320
Q ss_pred -----hhcc--------------------------c---c------hHHHHHHHHHHHHhc--CCcEEEEccccccCCCC
Q 005014 192 -----SKLA--------------------------G---E------SESNLRKAFEEAEKN--APSIIFIDEIDSIAPKR 229 (719)
Q Consensus 192 -----~~~~--------------------------g---~------~~~~l~~vf~~a~~~--~p~iL~iDEid~l~~~~ 229 (719)
.... + . ....+..+++..... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 0000 0 0 011233444443332 38899999999886421
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHH-------hhccCCCceEEEeCCCChHHHHHHHHHHhc
Q 005014 230 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA-------LRRFGRFDREIDIGVPDEVGRLEVLRIHTK 302 (719)
Q Consensus 230 ~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~a-------l~r~~Rf~~~i~i~~P~~~~R~~il~~~~~ 302 (719)
... +...|..+.+.. .++.+|.+++....+... -.-.+|+...+.+++.+.++..+++...+.
T Consensus 154 ~~~-------~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 154 GVN-------LLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp TCC-------CHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred chh-------HHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 111 112232333321 244445444432111110 001236667899999999999998876543
Q ss_pred CCCCCCcccHHHHHHHhCCCc
Q 005014 303 NMKLSDDVDLERIAKDTHGYV 323 (719)
Q Consensus 303 ~~~l~~~~~l~~la~~t~g~~ 323 (719)
......+ +...+...+.|+-
T Consensus 224 ~~~~~~~-~~~~i~~~t~G~P 243 (357)
T 2fna_A 224 EADIDFK-DYEVVYEKIGGIP 243 (357)
T ss_dssp HHTCCCC-CHHHHHHHHCSCH
T ss_pred HcCCCCC-cHHHHHHHhCCCH
Confidence 2112211 2377888888864
No 196
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.44 E-value=1.6e-07 Score=77.58 Aligned_cols=74 Identities=27% Similarity=0.425 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHH
Q 005014 289 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHF 368 (719)
Q Consensus 289 ~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 368 (719)
|.++|.+||+.+++++++..++++..++..|+||+|+||..+|++|++.++++. ...++.+||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------------RYIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHH
Confidence 678999999999999998888999999999999999999999999999887643 245889999
Q ss_pred HHhhccCCCCc
Q 005014 369 KTALGTSNPSA 379 (719)
Q Consensus 369 ~~al~~~~ps~ 379 (719)
..|+..+.|+.
T Consensus 65 ~~Al~~~~ps~ 75 (83)
T 3aji_B 65 EKAYKTVIKKD 75 (83)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHccCc
Confidence 99999888764
No 197
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=98.36 E-value=2e-06 Score=69.80 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=58.9
Q ss_pred CCcEEEEcccCCcccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEEEEEEecCCceEEECCCceEEecC
Q 005014 27 YGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEG 103 (719)
Q Consensus 27 ~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~t~~~~~~ 103 (719)
.|++|+|+|.. .+. +.++ +..|++++|.+ |||.+||+|.+...++.+.|+|++++|. +++++++|.+.+..
T Consensus 11 ~A~kVvLAP~~-~i~-~~~~-~~~~lk~~L~g--rPV~~GD~I~i~~~G~~i~F~Vv~t~P~-~V~Vt~~T~I~i~~ 81 (83)
T 2jv2_A 11 IMSELKLKPLP-KVE-LPPD-FVDVIRIKLQG--KTVRTGDVIGISILGKEVKFKVVQAYPS-PLRVEDRTKITLVT 81 (83)
T ss_dssp CCCEEEEEESS-SCC-CCHH-HHHHHHHHHTT--SEECTTCEEEEEETTEEEEEEEEEEESS-SEECCTTSEEEECC
T ss_pred EEEEEEEcCCC-cee-cCcc-HHHHHHHHHCC--CCccCCCEEEEeeCCCEEEEEEEEecCc-cEEECCCcEEEEEe
Confidence 68999999995 333 4443 47799999974 8999999999864447899999999999 99999999998854
No 198
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.28 E-value=1.3e-06 Score=84.71 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=74.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh--------C-CeEEEEechhhhhhcc----------cc-----hHHHHHHHHHHHH
Q 005014 155 KGILLYGPPGSGKTLIARAVANET--------G-AFFFCINGPEIMSKLA----------GE-----SESNLRKAFEEAE 210 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l--------~-~~~i~v~~~~l~~~~~----------g~-----~~~~l~~vf~~a~ 210 (719)
..+|++|+||||||++|..++... | .+++..+..++.-... .. ....+...+.. .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-P 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-G
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-c
Confidence 468999999999999988865442 3 4444455444422111 10 11122222111 2
Q ss_pred hcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCCh
Q 005014 211 KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDE 290 (719)
Q Consensus 211 ~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~ 290 (719)
....++|+|||++.+.+.+...... ..++..+..... ..+-+|.++++++.++..++. |+...+.+..|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~~r~-~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNTHRH-QGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGGTTT-TTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred ccCceEEEEEChhhhccCccccchh------HHHHHHHHhcCc-CCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 3457799999999997654222111 123444443332 344556667778999999987 9988888876544
Q ss_pred H
Q 005014 291 V 291 (719)
Q Consensus 291 ~ 291 (719)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 3
No 199
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.24 E-value=6.1e-07 Score=86.21 Aligned_cols=110 Identities=20% Similarity=0.262 Sum_probs=62.7
Q ss_pred CCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhhccCCchhhHHHHHHHHHhCCCEEEEEeccchhhcccC
Q 005014 424 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 503 (719)
Q Consensus 424 ~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~ 503 (719)
++..++++||||||||||++|.++|+.+....+.+..+. +.+ .++.+.. ..++++||+|.-.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l~~--~kIiiLDEad~~~---- 116 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPLTD--TKVAMLDDATTTC---- 116 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGGTT--CSSEEEEEECHHH----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcccCC--CCEEEEECCCchh----
Confidence 344567999999999999999999999865433221100 000 0111112 2499999998521
Q ss_pred CCCCCCCCchHHHHHHHHHHhcCCC------CC-----CcEEEEEecCCCCCCC---cccCCCCCcceEEEeCC
Q 005014 504 SSVGDAGGAADRVLNQLLTEMDGMS------AK-----KTVFIIGATNRPDIID---PALLRPGRLDQLIYIPL 563 (719)
Q Consensus 504 ~~~~~~~~~~~~~~~~ll~~ld~~~------~~-----~~v~vi~atn~~~~ld---~allrpgRf~~~i~~~~ 563 (719)
...+-..+-+.|||.. .. ..-.+|.|||.+=.-+ +.|.+ |+- .+.|+.
T Consensus 117 ---------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~ 178 (212)
T 1tue_A 117 ---------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPN 178 (212)
T ss_dssp ---------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCS
T ss_pred ---------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCC
Confidence 1122234556677741 00 1235778888742223 34555 775 667763
No 200
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.22 E-value=4.7e-07 Score=96.67 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=75.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccccCC-
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP- 227 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~- 227 (719)
+++.++..++|+||||||||||++++++..+..++.+..++- .....++.+| ...++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~~------q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVAI------DQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGGT------TCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHhc------chhHHHHHHHHHHHHH
Confidence 578899999999999999999999999998876655433221 0111122222 235679999998875
Q ss_pred CCCCCc-hHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCC
Q 005014 228 KREKTH-GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 287 (719)
Q Consensus 228 ~~~~~~-~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~ 287 (719)
.++... .... ....+.+.+++ .+.|+.++|+++.+ +++.++++++..+....
T Consensus 232 ~r~l~~~~~~~--~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSGQGIN--NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCCSHHH--HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HhhccccCcch--HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 222111 1110 11334444554 23456789999988 67888888877665543
No 201
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.19 E-value=1.5e-06 Score=90.72 Aligned_cols=71 Identities=20% Similarity=0.388 Sum_probs=46.1
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC----CeEEEEechhhhhhcccch-HHHHHHHHHHHHhcCCcEEEEccccccC
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~----~~~i~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
+.+++|+||||||||+|+++++..+. ..++.++++++........ ...+...+... ..+.+|||||++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC
Confidence 57899999999999999999998654 6778888877655433211 11111222222 234699999996543
No 202
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.19 E-value=1.1e-05 Score=76.78 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=23.3
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCe
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAF 181 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~ 181 (719)
.+.|.||||||||||++.+++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58999999999999999999998643
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.18 E-value=6e-06 Score=79.34 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=27.4
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeE
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETGAFF 182 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~~~~ 182 (719)
++...++||+||||||||++|.++|+.+...+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 45556899999999999999999999987554
No 204
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.15 E-value=6.7e-06 Score=78.36 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=22.3
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCe
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQAN 454 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~ 454 (719)
+.|.||||+|||||++.+++.++..
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6899999999999999999987643
No 205
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.15 E-value=1.2e-05 Score=86.75 Aligned_cols=121 Identities=26% Similarity=0.365 Sum_probs=73.1
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC---CeEEEEechhhhhhc--
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSKL-- 194 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~---~~~i~v~~~~l~~~~-- 194 (719)
..+.|-...++++.+.+.. + ......|+|+|++||||+++|+++....+ .+|+.++|..+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKK----------I-SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHH----------H-TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHH----------h-cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 3455555556665555443 1 12345699999999999999999988764 689999997653211
Q ss_pred ---c--------cchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----C----C
Q 005014 195 ---A--------GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----R 254 (719)
Q Consensus 195 ---~--------g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-----~----~ 254 (719)
. |.... ....|+.+. ..+||+|||+.+... +...|+..++... . .
T Consensus 206 ~elfg~~~g~~tga~~~-~~g~~~~a~---~gtlfldei~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSS-KEGFFELAD---GGTLFLDEIGELSLE-----------AQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSC-BCCHHHHTT---TSEEEEESGGGCCHH-----------HHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccc-cCCceeeCC---CcEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceee
Confidence 1 10000 112344443 359999999988532 3344555554311 1 1
Q ss_pred CcEEEEEecCCC
Q 005014 255 AHVIVIGATNRP 266 (719)
Q Consensus 255 ~~vivI~atn~~ 266 (719)
..+.+|++||..
T Consensus 271 ~~~rii~at~~~ 282 (387)
T 1ny5_A 271 VNVRILAATNRN 282 (387)
T ss_dssp CCCEEEEEESSC
T ss_pred ccEEEEEeCCCC
Confidence 256788888853
No 206
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.05 E-value=1.3e-06 Score=71.75 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHHHHHHHhhccccccccchhhHhHhhccccchHHHHH
Q 005014 291 VGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKT 370 (719)
Q Consensus 291 ~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 370 (719)
++|.+||+.+++++++..++++..++..|+||+|+||..+|++|++.++++.. ..++.+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHH
Confidence 36889999999999888889999999999999999999999999999987632 3478899999
Q ss_pred hhccCC
Q 005014 371 ALGTSN 376 (719)
Q Consensus 371 al~~~~ 376 (719)
|+..+.
T Consensus 64 Al~~v~ 69 (82)
T 2dzn_B 64 AYATQV 69 (82)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 998874
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.97 E-value=2.4e-05 Score=77.51 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=29.4
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEe
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCIN 186 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~ 186 (719)
|+.++..++|+||||+|||||++.++..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46788889999999999999999998654 44444444
No 208
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.96 E-value=1.3e-05 Score=80.11 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=51.3
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHH--h-------CCeEEEEechhh------hh--hccc----------------
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANE--T-------GAFFFCINGPEI------MS--KLAG---------------- 196 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~--l-------~~~~i~v~~~~l------~~--~~~g---------------- 196 (719)
|+.++..++|+||||+|||||++.++.. . +...+++++... .. ...+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5778889999999999999999999985 3 345677765441 00 0000
Q ss_pred chH---HHHHHHHHHHHhcCCcEEEEccccccCCC
Q 005014 197 ESE---SNLRKAFEEAEKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 197 ~~~---~~l~~vf~~a~~~~p~iL~iDEid~l~~~ 228 (719)
... ..+..+.+......|.+++|||+..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 011 11222334444567899999999887643
No 209
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.90 E-value=9.4e-06 Score=81.68 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=24.8
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCC
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQA 453 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~ 453 (719)
++.++++||||||||||++|+++|+.+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 33567999999999999999999997643
No 210
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.89 E-value=6.5e-05 Score=80.20 Aligned_cols=119 Identities=25% Similarity=0.449 Sum_probs=71.4
Q ss_pred cccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--EEEEechhhhhhcc---
Q 005014 121 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMSKLA--- 195 (719)
Q Consensus 121 ~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~--~i~v~~~~l~~~~~--- 195 (719)
.+.|....+.++.+.+...- .....++|+|++||||+++|+++....+.. |+.++|..+.....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45666666666655543211 223469999999999999999998876543 99999976532110
Q ss_pred ----------cchHHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----C----CCc
Q 005014 196 ----------GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RAH 256 (719)
Q Consensus 196 ----------g~~~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~-----~----~~~ 256 (719)
|... .....|+.+. ...||+|||+.+... +...|+..++.-. . ...
T Consensus 199 lfg~~~g~~tga~~-~~~g~~~~a~---~gtlfldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALT-RKKGKLELAD---QGTLFLDEVGELDQR-----------VQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCC-CEECHHHHTT---TSEEEEETGGGSCHH-----------HHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCccc-ccCChHhhcC---CCeEEecChhhCCHH-----------HHHHHHHHHHhCCcccCCCCcceeee
Confidence 0000 0112344443 348999999988532 3345555554311 1 124
Q ss_pred EEEEEecCC
Q 005014 257 VIVIGATNR 265 (719)
Q Consensus 257 vivI~atn~ 265 (719)
+-+|++||.
T Consensus 264 ~rii~at~~ 272 (368)
T 3dzd_A 264 IRVISATNK 272 (368)
T ss_dssp CEEEEEESS
T ss_pred eEEEEecCC
Confidence 567888874
No 211
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.88 E-value=5e-05 Score=80.17 Aligned_cols=113 Identities=22% Similarity=0.350 Sum_probs=66.6
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhh----------------cccchHHHHHHHHHHHH
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----------------LAGESESNLRKAFEEAE 210 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~----------------~~g~~~~~l~~vf~~a~ 210 (719)
|+.++.-++|+||||||||||+..++..+ +..++++++...... .....+..+..+-....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 46788889999999999999999998774 456667776432110 00112223333223333
Q ss_pred hcCCcEEEEccccccCCCC--CCCch----HHHHHHHHHHHHHhhcccCCCcEEEEEe
Q 005014 211 KNAPSIIFIDEIDSIAPKR--EKTHG----EVERRIVSQLLTLMDGLKSRAHVIVIGA 262 (719)
Q Consensus 211 ~~~p~iL~iDEid~l~~~~--~~~~~----~~~~~v~~~L~~~l~~~~~~~~vivI~a 262 (719)
...+.+++||.+..+.+.. ....+ ....+.+.+++..+..+....++.||.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4678999999998887521 11101 1234555566655555544444444443
No 212
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.87 E-value=3e-05 Score=81.83 Aligned_cols=117 Identities=20% Similarity=0.285 Sum_probs=70.3
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh----hccC------------CchhhHHHHHHHHH
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT----MWFG------------ESEANVREIFDKAR 483 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~----~~~g------------~se~~i~~~f~~a~ 483 (719)
|+.+..-++|+||||||||||+..++..+ +...++++..+... ..+| ..+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45555569999999999999999999874 45677777655321 1111 11222333333344
Q ss_pred hCCCEEEEEeccchhhccc--CCCCCCC-CCchHHHHHHHHHHhcCCCCCCcEEEEEec
Q 005014 484 QSAPCVLFFDELDSIATQR--GSSVGDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGAT 539 (719)
Q Consensus 484 ~~~p~il~iDEid~l~~~r--~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~v~vi~at 539 (719)
...+.++++|.+..+.+.. ....++. .....+.+.+++..|..+....++.||.+.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5778999999999887521 1110111 113457777887777766544555555543
No 213
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.87 E-value=2.1e-05 Score=77.79 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=26.5
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
|+.++..+.|+||||||||||++.+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57888899999999999999999999854
No 214
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.85 E-value=3.6e-05 Score=75.57 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=33.2
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEech
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP 188 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~ 188 (719)
|+.++..++|+||||+|||||++.++...+...++++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 578888999999999999999999998666677777654
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.82 E-value=3.2e-05 Score=75.88 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=32.3
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccc
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 462 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~ 462 (719)
|+.+..-++|+||||+|||++++.+|...+.+.+.++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4555566999999999999999999986667777777654
No 216
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.82 E-value=1.8e-05 Score=84.10 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4567888899999999999999999999764
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.79 E-value=5.5e-05 Score=75.83 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.4
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHH
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVA 175 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la 175 (719)
|+.++..++|.||||+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 67888999999999999999999998
No 218
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.79 E-value=1.8e-05 Score=80.41 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=26.5
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|||||||++++++..
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 346788889999999999999999998865
No 219
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.79 E-value=1.6e-05 Score=84.18 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=65.5
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh----hccCC------------chhhHHHHHHHHH
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT----MWFGE------------SEANVREIFDKAR 483 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~----~~~g~------------se~~i~~~f~~a~ 483 (719)
|+.+..-++|+||||+|||+|+..++... +.+.++++...-.. ...|. .+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45555669999999999999999998664 45666666543221 11221 1222223333444
Q ss_pred hCCCEEEEEeccchhhcccC--CCCCCC-CCchHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 005014 484 QSAPCVLFFDELDSIATQRG--SSVGDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 541 (719)
Q Consensus 484 ~~~p~il~iDEid~l~~~r~--~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~ 541 (719)
...|.+||+|++..+..... ...++. .+...+.+.+++..|..+....++.||+++..
T Consensus 137 ~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~ 197 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINEL 197 (349)
T ss_dssp TTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 56789999999999874211 000010 11223455556655543322234455555543
No 220
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.77 E-value=8.1e-05 Score=74.56 Aligned_cols=129 Identities=23% Similarity=0.203 Sum_probs=71.7
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHH--HH--hCCeEEEEeccchhh------hccCC----------------------
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIA--NE--CQANFISVKGPELLT------MWFGE---------------------- 470 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la--~~--~~~~~i~v~~~~l~~------~~~g~---------------------- 470 (719)
++.+..-++|.||||+|||||+++++ .. .+...+.+...+... ..+|-
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 45555669999999999999999998 43 234444554432110 00110
Q ss_pred --------------chhhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEE
Q 005014 471 --------------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 536 (719)
Q Consensus 471 --------------se~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 536 (719)
.......+........|.++++||.-++..... + .....+.+..++..+.. .+..||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~----d-~~~~~~~l~~l~~~l~~----~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE----E-ERKIREVLLKLNTILLE----MGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS----S-GGGHHHHHHHHHHHHHH----HCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC----C-HHHHHHHHHHHHHHHHH----CCCeEE
Confidence 011122333344557889999999988764321 1 12334556667766642 235677
Q ss_pred EecCCCCCCC-----cccCCCCCc-ceEEEeC
Q 005014 537 GATNRPDIID-----PALLRPGRL-DQLIYIP 562 (719)
Q Consensus 537 ~atn~~~~ld-----~allrpgRf-~~~i~~~ 562 (719)
.+|+..+... +.+.. -+ |.++.+.
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp EEECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred EEECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 7887765542 22222 35 7777664
No 221
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.77 E-value=2.2e-05 Score=80.15 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.9
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3467788899999999999999999998763
No 222
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.76 E-value=2.9e-05 Score=81.94 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4567888899999999999999999999763
No 223
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.75 E-value=5.3e-05 Score=80.53 Aligned_cols=118 Identities=22% Similarity=0.276 Sum_probs=68.8
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhh----ccCC-----------c-hhhHHHHHHHHH
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----WFGE-----------S-EANVREIFDKAR 483 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~----~~g~-----------s-e~~i~~~f~~a~ 483 (719)
|+++..-++|+||||+|||+||..+|... +.+.+.++...-... ..|. + +..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45555669999999999999999888764 456677765432211 1111 1 222222323334
Q ss_pred hCCCEEEEEeccchhhcccCCCC--CCC-CCchHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 005014 484 QSAPCVLFFDELDSIATQRGSSV--GDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGATN 540 (719)
Q Consensus 484 ~~~p~il~iDEid~l~~~r~~~~--~~~-~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn 540 (719)
...+.+||||.+..+..+..... ++. .+...+.+.+++..|..+....++.||++..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 56789999999999875321110 000 0122356777777776554455566666543
No 224
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.74 E-value=1.6e-05 Score=75.22 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.6
Q ss_pred hCCCCCceEEEECCCCCChHHHHHH
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARA 173 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~ 173 (719)
+.+.++.-++|+||||||||||+++
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 3456788899999999999999993
No 225
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.74 E-value=8.4e-05 Score=78.60 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=55.1
Q ss_pred CChhhHhhh--CCCCCceEEEECCCCCChHHHHHHHHHHh---------CCeEEEEechhh---------hhhcc-----
Q 005014 141 RHPQLFKSI--GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEI---------MSKLA----- 195 (719)
Q Consensus 141 ~~~~~~~~l--~~~~~~~vLL~GppGtGKTtla~~la~~l---------~~~~i~v~~~~l---------~~~~~----- 195 (719)
-.+.+-.-+ |+.++..++|+||||||||+|+..+|... +...++++.... ...+.
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~ 186 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDA 186 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHH
Confidence 334443434 67888889999999999999999999873 445667765431 10000
Q ss_pred ----------cchH---HHHHHHHHHHHh--cCCcEEEEccccccCCC
Q 005014 196 ----------GESE---SNLRKAFEEAEK--NAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 196 ----------g~~~---~~l~~vf~~a~~--~~p~iL~iDEid~l~~~ 228 (719)
...+ ..+..+...... ..+.+|+||.+..+...
T Consensus 187 ~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 187 VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 0011 112222333444 67889999999988743
No 226
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.73 E-value=0.0001 Score=78.30 Aligned_cols=114 Identities=21% Similarity=0.391 Sum_probs=63.8
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhhhc----cc-----------chHHHHHHHHH-HHH
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL----AG-----------ESESNLRKAFE-EAE 210 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~~~----~g-----------~~~~~l~~vf~-~a~ 210 (719)
|+.++..++|+||||+|||+|+..++... +..+++++...-.... .+ .....+...++ ...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 46778889999999999999999887654 5566666653211100 00 11122222333 233
Q ss_pred hcCCcEEEEccccccCCCCCCC--chH----HHHHHHHHHHHHhhcccCCCcEEEEEec
Q 005014 211 KNAPSIIFIDEIDSIAPKREKT--HGE----VERRIVSQLLTLMDGLKSRAHVIVIGAT 263 (719)
Q Consensus 211 ~~~p~iL~iDEid~l~~~~~~~--~~~----~~~~v~~~L~~~l~~~~~~~~vivI~at 263 (719)
...+.+||||.+..+.+..... .++ ...+.+.+++..+..+....++.||.+.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4668999999999987532111 011 2223344444444444344455555543
No 227
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.73 E-value=4.2e-05 Score=80.98 Aligned_cols=78 Identities=29% Similarity=0.421 Sum_probs=50.6
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhh----hccc------------chHHHHHHHHHHHH
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----KLAG------------ESESNLRKAFEEAE 210 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~----~~~g------------~~~~~l~~vf~~a~ 210 (719)
|+.++..++|+||||+|||||+..++... +...++++...-.. ...| ..+..+..+.....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56778889999999999999999988654 45566666432111 0011 11222222222333
Q ss_pred hcCCcEEEEccccccCC
Q 005014 211 KNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 211 ~~~p~iL~iDEid~l~~ 227 (719)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999874
No 228
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.73 E-value=4.2e-05 Score=76.30 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=51.3
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHH--h-------CCeEEEEeccchhh--------hccCC---------------
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANE--C-------QANFISVKGPELLT--------MWFGE--------------- 470 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~--~-------~~~~i~v~~~~l~~--------~~~g~--------------- 470 (719)
|+.+..-++|+||||+|||+|++.++.. . +.+.++++..+... ..+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4555556999999999999999999985 2 45677887655200 00111
Q ss_pred chhh----HHHHHHHHHhCCCEEEEEeccchhhc
Q 005014 471 SEAN----VREIFDKARQSAPCVLFFDELDSIAT 500 (719)
Q Consensus 471 se~~----i~~~f~~a~~~~p~il~iDEid~l~~ 500 (719)
+... +..+.+......|.++++||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1111 22344445556789999999998764
No 229
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.72 E-value=3.5e-05 Score=81.35 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 3467888999999999999999999998753
No 230
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.71 E-value=3.9e-05 Score=81.28 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 3467788899999999999999999998764
No 231
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.71 E-value=3.6e-05 Score=81.42 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3467888899999999999999999998763
No 232
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.70 E-value=3.7e-05 Score=76.68 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||++++++...
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4567888999999999999999999988653
No 233
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.69 E-value=3.2e-05 Score=81.60 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3456788899999999999999999998764
No 234
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.69 E-value=5.1e-05 Score=80.38 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=33.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh---------CCeEEEEech
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGP 188 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l---------~~~~i~v~~~ 188 (719)
.|+.++.-+.|+||||||||||++.++... +...+++++.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 467888899999999999999999999987 2355677664
No 235
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.67 E-value=6e-05 Score=81.03 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=63.1
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---------CCeEEEEechhhhh--------hcccc---------------
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEIMS--------KLAGE--------------- 197 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---------~~~~i~v~~~~l~~--------~~~g~--------------- 197 (719)
|+.++..++|+||||||||||++.++... +...+++++.+... ...+-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 68888999999999999999999776432 23466776543110 00010
Q ss_pred -h---HHHHHHHHHHHHhcCCcEEEEccccccCCCCCCCchHH--HHHHHHHHHHHhhcccCCCcEEEEEecC
Q 005014 198 -S---ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV--ERRIVSQLLTLMDGLKSRAHVIVIGATN 264 (719)
Q Consensus 198 -~---~~~l~~vf~~a~~~~p~iL~iDEid~l~~~~~~~~~~~--~~~v~~~L~~~l~~~~~~~~vivI~atn 264 (719)
. ...+..+........|.+|+||++..+....-...++. ..+.+.+++..+..+....++.||.+++
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~H 326 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQ 326 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 0 11222333344456789999999988875432211111 2233344555554444333445555554
No 236
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.67 E-value=4.4e-05 Score=75.54 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=27.6
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEe
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVK 459 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~ 459 (719)
|+.+...++|+||||+|||||++.++... +.+.+.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34455558999999999999999999654 34555554
No 237
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.66 E-value=6e-05 Score=79.09 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=55.5
Q ss_pred CChhhHhhh--CCCCCceEEEECCCCCChHHHHHHHHHHh---------CCeEEEEechhh---------hhhcc-----
Q 005014 141 RHPQLFKSI--GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEI---------MSKLA----- 195 (719)
Q Consensus 141 ~~~~~~~~l--~~~~~~~vLL~GppGtGKTtla~~la~~l---------~~~~i~v~~~~l---------~~~~~----- 195 (719)
-.+.+-.-+ |+.++..++|+||||+|||+|+..++... +...++++.... ...+.
T Consensus 92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~ 171 (324)
T 2z43_A 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDN 171 (324)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHH
T ss_pred CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHH
Confidence 334444433 67888899999999999999999999875 456677765431 00000
Q ss_pred ----------cchH---HHHHHHHHHHHh-cCCcEEEEccccccCC
Q 005014 196 ----------GESE---SNLRKAFEEAEK-NAPSIIFIDEIDSIAP 227 (719)
Q Consensus 196 ----------g~~~---~~l~~vf~~a~~-~~p~iL~iDEid~l~~ 227 (719)
...+ ..+..+...... ..+.+|+||.+..+..
T Consensus 172 ~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 172 VMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 0011 122333334444 6789999999998864
No 238
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.63 E-value=3.8e-05 Score=81.64 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3467788899999999999999999998753
No 239
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.63 E-value=9.1e-05 Score=74.77 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467888899999999999999999998753
No 240
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.62 E-value=4e-05 Score=77.72 Aligned_cols=78 Identities=22% Similarity=0.381 Sum_probs=49.3
Q ss_pred HhhhCCCCCceEEEECCCCCChHHHHHHHHHHhCC---eEEEEechhh---h--------hhcccchHHHHHHHHHHHHh
Q 005014 146 FKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGPEI---M--------SKLAGESESNLRKAFEEAEK 211 (719)
Q Consensus 146 ~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~---~~i~v~~~~l---~--------~~~~g~~~~~l~~vf~~a~~ 211 (719)
++++.+.++..++|+||+||||||+++++++.+.. --+.+.+..+ . ....+.....++..+..+..
T Consensus 17 l~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 17 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp HHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHH
T ss_pred HHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHh
Confidence 33444567788999999999999999999987531 1222222111 0 00001011234666777777
Q ss_pred cCCcEEEEcccc
Q 005014 212 NAPSIIFIDEID 223 (719)
Q Consensus 212 ~~p~iL~iDEid 223 (719)
..|.+|++||.-
T Consensus 97 ~~p~illlDEp~ 108 (261)
T 2eyu_A 97 EDPDVIFVGEMR 108 (261)
T ss_dssp HCCSEEEESCCC
T ss_pred hCCCEEEeCCCC
Confidence 889999999974
No 241
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.62 E-value=4.4e-05 Score=75.50 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=30.1
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---------CCeEEEEeccc
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPE 462 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---------~~~~i~v~~~~ 462 (719)
++.+..-+.|+||||+|||||++.++... +...+.+++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 45555559999999999999999999853 23366676644
No 242
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.61 E-value=0.00015 Score=76.87 Aligned_cols=78 Identities=22% Similarity=0.416 Sum_probs=51.4
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhh----hccc-----------chHHHHHHHHHH-HH
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----KLAG-----------ESESNLRKAFEE-AE 210 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~----~~~g-----------~~~~~l~~vf~~-a~ 210 (719)
|+.++..++|+|+||+|||+||..++... +..+++++...... ...+ .....+..++.. ..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46788889999999999999999988754 55677777632111 0000 112223333332 33
Q ss_pred hcCCcEEEEccccccCC
Q 005014 211 KNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 211 ~~~p~iL~iDEid~l~~ 227 (719)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999998875
No 243
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.59 E-value=6.6e-05 Score=74.28 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||++++++...
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3466788899999999999999999998754
No 244
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.59 E-value=5.3e-05 Score=79.84 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 3467888899999999999999999998764
No 245
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.57 E-value=0.0004 Score=73.34 Aligned_cols=159 Identities=12% Similarity=0.036 Sum_probs=97.4
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHhC---C-eEEEEeccchhhhccCCchhhHHHHHHHHHh----CCCEEEEEeccch
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANECQ---A-NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDS 497 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~~---~-~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~il~iDEid~ 497 (719)
....+|||||+|.||++.++.++..+. . ++..+. +-+ +..++.+.+.+.. ....|+++||++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-------IDP--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-------CCT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-------ecC--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 345699999999999999999988652 1 222221 111 2445666655543 4467999999987
Q ss_pred -hhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC-----CCCCCcccCCCCCcceEEEeCCCCHHHHHH
Q 005014 498 -IATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-----PDIIDPALLRPGRLDQLIYIPLPDEESRLQ 571 (719)
Q Consensus 498 -l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~-----~~~ld~allrpgRf~~~i~~~~p~~~~r~~ 571 (719)
+. ....+.|+..++... ...++|+++++. ...+-+++.+ |. .++.|.+++..+...
T Consensus 88 kl~--------------~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 88 GPN--------------AAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CCC--------------TTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCC--------------hHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 52 124567788777543 234455555432 1234456666 66 488999999999999
Q ss_pred HHHHHhccCCCCCcc-CHHHHHHHccCCCHHHHHHHHHHHHH
Q 005014 572 IFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEICQRACK 612 (719)
Q Consensus 572 Il~~~~~~~~~~~~~-d~~~la~~~~~~sg~di~~~~~~A~~ 612 (719)
.++..+++.++.-+. .+..+++.+. .+-+++.+.+.....
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~-gdl~~~~~elekl~l 190 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYE-GNLLALAQALERLSL 190 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSST-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhc-hHHHHHHHHHHHHHH
Confidence 999988877654222 2444554443 244444444444433
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.56 E-value=0.00019 Score=73.72 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=49.3
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEechhhhh----hccc-----------chHHHH-HHHHHH
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMS----KLAG-----------ESESNL-RKAFEE 208 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l-----~~~~i~v~~~~l~~----~~~g-----------~~~~~l-~~vf~~ 208 (719)
|+.++ .++|+||||||||||+..++... +...+++++.+-.. ...| .....+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 46777 79999999999999987765443 56777887643211 0000 111122 222222
Q ss_pred ---HHhcCCcEEEEccccccCCC
Q 005014 209 ---AEKNAPSIIFIDEIDSIAPK 228 (719)
Q Consensus 209 ---a~~~~p~iL~iDEid~l~~~ 228 (719)
.+...|.+++||-|..+.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 24567999999999999753
No 247
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.55 E-value=6.8e-05 Score=79.43 Aligned_cols=117 Identities=23% Similarity=0.351 Sum_probs=66.3
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh----hccCC-----------chhhHHHHHH-HHH
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT----MWFGE-----------SEANVREIFD-KAR 483 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~----~~~g~-----------se~~i~~~f~-~a~ 483 (719)
|+++..-++|+||||+|||+||..+|... +.+.+.++...... ...|. +...+..+.. ..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45666669999999999999999988764 45677777633211 11121 1122333332 334
Q ss_pred hCCCEEEEEeccchhhcccCCC--CCCC-CCchHHHHHHHHHHhcCCCCCCcEEEEEec
Q 005014 484 QSAPCVLFFDELDSIATQRGSS--VGDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGAT 539 (719)
Q Consensus 484 ~~~p~il~iDEid~l~~~r~~~--~~~~-~~~~~~~~~~ll~~ld~~~~~~~v~vi~at 539 (719)
...+.+|+||.+..+....... .++. .+...+.+.+++..|..+....++.||++.
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~n 197 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5678899999999987532100 0010 012234556666666544333445666544
No 248
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.54 E-value=0.0001 Score=79.58 Aligned_cols=118 Identities=19% Similarity=0.113 Sum_probs=66.2
Q ss_pred eEEEECCCCCChHHHHHHH-HHHhCCeEEEEech-----hhhhhcccc--hHHHHHHHHHHHHhcCCcEEEEccccccCC
Q 005014 156 GILLYGPPGSGKTLIARAV-ANETGAFFFCINGP-----EIMSKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 227 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~l-a~~l~~~~i~v~~~-----~l~~~~~g~--~~~~l~~vf~~a~~~~p~iL~iDEid~l~~ 227 (719)
+|||.|+||| ||++++++ ++.+.... ++.+. .+.....+. ..-.-+ .+..|. ..++|+|||+.+.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~~~~~G-~l~LAd---gGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGWALRAG-AAVLAD---GGILAVDHLEGAPE 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSEEEEEC-HHHHTT---TSEEEEECCTTCCH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCcccCCC-eeEEcC---CCeeehHhhhhCCH
Confidence 7999999999 99999999 77654433 22221 111110000 000001 111222 35999999998742
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcc-------cCCCcEEEEEecCCCC-----------CCCHHhhccCCCceEE-EeCCC
Q 005014 228 KREKTHGEVERRIVSQLLTLMDGL-------KSRAHVIVIGATNRPN-----------SIDPALRRFGRFDREI-DIGVP 288 (719)
Q Consensus 228 ~~~~~~~~~~~~v~~~L~~~l~~~-------~~~~~vivI~atn~~~-----------~ld~al~r~~Rf~~~i-~i~~P 288 (719)
.....|+..|+.. .-..++.||||+|+.. .+++++.. ||+..+ .+..|
T Consensus 315 -----------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~p 381 (506)
T 3f8t_A 315 -----------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDP 381 (506)
T ss_dssp -----------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--
T ss_pred -----------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCC
Confidence 2345566666532 1234678999999864 67788887 997654 34556
Q ss_pred ChHH
Q 005014 289 DEVG 292 (719)
Q Consensus 289 ~~~~ 292 (719)
+.+.
T Consensus 382 d~e~ 385 (506)
T 3f8t_A 382 RPGE 385 (506)
T ss_dssp ----
T ss_pred ChhH
Confidence 5544
No 249
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.53 E-value=0.00022 Score=67.43 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=30.7
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEechh
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 189 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~ 189 (719)
+..|+|+|+|||||||+++.|+..++..++.++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 457999999999999999999999998877665443
No 250
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.53 E-value=0.00014 Score=73.47 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=26.2
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
.+.++..+.|.||+|||||||++++++.+.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356788899999999999999999988753
No 251
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.51 E-value=0.00014 Score=73.67 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3467888899999999999999999998764
No 252
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=5.6e-05 Score=73.25 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=29.7
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
.+.+++.|+|+|+|||||||+++.|++.++..++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345677899999999999999999999999887643
No 253
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.50 E-value=8.3e-05 Score=79.15 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3456788899999999999999999998763
No 254
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.48 E-value=9.7e-05 Score=78.22 Aligned_cols=72 Identities=25% Similarity=0.440 Sum_probs=46.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC----CeEEEEech-hhh---------hhcccchHHHHHHHHHHHHhcCCcEE
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGP-EIM---------SKLAGESESNLRKAFEEAEKNAPSII 217 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~----~~~i~v~~~-~l~---------~~~~g~~~~~l~~vf~~a~~~~p~iL 217 (719)
.++..++|.||+||||||+++++++.+. ..++.+..+ ++. ....+.....+...+..+..+.|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 3455799999999999999999988763 334333221 110 01111111234457777888999999
Q ss_pred EEcccc
Q 005014 218 FIDEID 223 (719)
Q Consensus 218 ~iDEid 223 (719)
++||+-
T Consensus 201 llDEp~ 206 (356)
T 3jvv_A 201 LVGEMR 206 (356)
T ss_dssp EESCCC
T ss_pred ecCCCC
Confidence 999974
No 255
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.46 E-value=6.8e-05 Score=74.92 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=26.2
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.+ ..+.|.||+|||||||++++++...
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34677 8899999999999999999998764
No 256
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.45 E-value=0.00034 Score=70.27 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=25.3
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCC
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETGA 180 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~~ 180 (719)
.+..+++|+||||||||+++++||..++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 33567999999999999999999998765
No 257
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=0.00043 Score=65.00 Aligned_cols=94 Identities=17% Similarity=0.288 Sum_probs=71.5
Q ss_pred CHHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccCCcccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEEE
Q 005014 2 NKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFK 81 (719)
Q Consensus 2 ~~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~ 81 (719)
..-+++++|+..||.|+|+. ..+|.++.|.++|.+...-++ ..+.+.|..+++. .-.+..||+|.+..+...+.|+
T Consensus 92 P~wmm~~L~l~~gd~V~v~~-~~LPkgt~vklqP~~~~Fl~i--~npKavLE~~Lrn-fstLT~Gd~I~I~~~~~~y~l~ 167 (190)
T 2yuj_A 92 PHWMMQNLLLEEGGLVQVES-VNLQVATYSKFQPQSPDFLDI--TNPKAVLENALRN-FACLTTGDVIAINYNEKIYELR 167 (190)
T ss_dssp CSHHHHHHTCCTTEEEEEEE-ECCCCCSEEEEEESSHHHHHS--SCHHHHHHHHHTT-CCEECTTCEEEEESSSCEEEEE
T ss_pred CHHHHHhcCCCCCCEEEEEE-eecCCCcEEEEEECCcccccc--ccHHHHHHHHHhc-CcccccCCEEEEEeCCEEEEEE
Confidence 34689999999999999998 489999999999986443233 2345566666653 3458999999998887888999
Q ss_pred EEEecCCc-eEEECCCceE
Q 005014 82 VIETDPPE-YCVVAPDTEI 99 (719)
Q Consensus 82 v~~~~p~~-~~~~~~~t~~ 99 (719)
|.++.|.. .+++..+-++
T Consensus 168 V~e~kP~~aV~IidTDl~v 186 (190)
T 2yuj_A 168 VMETKPDKAVSIIECDMNV 186 (190)
T ss_dssp EEEESSSSSEECSSCCCEE
T ss_pred EEEEcCCCeEEEEeCCEEE
Confidence 99999984 4555555444
No 258
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.43 E-value=0.00028 Score=72.41 Aligned_cols=116 Identities=14% Similarity=0.235 Sum_probs=66.4
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh-----CCeEEEEeccchhh----hccCCc--------hhhHHHH-H---HH
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT----MWFGES--------EANVREI-F---DK 481 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~----~~~g~s--------e~~i~~~-f---~~ 481 (719)
|+.+. -++++||||+|||+|+-.++... +...++++..+-.. .-+|.. +....++ + +.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45554 58999999999999988776553 45677887654321 111211 1122222 2 22
Q ss_pred ---HHhCCCEEEEEeccchhhcccCCCC--CCC-CC--chHHHHHHHHHHhcCCCCCCcEEEEEec
Q 005014 482 ---ARQSAPCVLFFDELDSIATQRGSSV--GDA-GG--AADRVLNQLLTEMDGMSAKKTVFIIGAT 539 (719)
Q Consensus 482 ---a~~~~p~il~iDEid~l~~~r~~~~--~~~-~~--~~~~~~~~ll~~ld~~~~~~~v~vi~at 539 (719)
.+...|.++++|-|..+.++-.-.. ++. -+ ...|.++++|..|-++....++.+|.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 3566899999999999975321110 110 01 3457778887776655444555555443
No 259
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.42 E-value=0.00014 Score=76.25 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=67.5
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---------CCeEEEEeccchh--------hhccCC---------------
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELL--------TMWFGE--------------- 470 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---------~~~~i~v~~~~l~--------~~~~g~--------------- 470 (719)
|+++..-++|+||||+|||+++..+|... +.+.++++..... ....|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 55555669999999999999999999774 4567777765421 000111
Q ss_pred -ch---hhHHHHHHHHHh-CCCEEEEEeccchhhcccCCCCCCCCCchH--HHHHHHHHHhcCCCCCCcEEEEEec
Q 005014 471 -SE---ANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAAD--RVLNQLLTEMDGMSAKKTVFIIGAT 539 (719)
Q Consensus 471 -se---~~i~~~f~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~--~~~~~ll~~ld~~~~~~~v~vi~at 539 (719)
.+ ..+..+....+. ..+.+|+||.+..+......+. +.... ..+.+++..|..+....++.||++.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~---g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR---ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT---TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc---ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 11 122334445555 6789999999999875321110 11122 2466666666655433445555554
No 260
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.42 E-value=0.00016 Score=73.12 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=49.3
Q ss_pred hhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC---CeEEEEeccchh-----------hhccCCchhhHHHHHHHHH
Q 005014 418 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL-----------TMWFGESEANVREIFDKAR 483 (719)
Q Consensus 418 ~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~---~~~i~v~~~~l~-----------~~~~g~se~~i~~~f~~a~ 483 (719)
.++++.+.+..-++|.||+|+||||+++++++... ..-+.+.+..+. ...+|......+..+..+-
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHH
Confidence 44444544444589999999999999999998753 223433332211 0011212234556666666
Q ss_pred hCCCEEEEEeccc
Q 005014 484 QSAPCVLFFDELD 496 (719)
Q Consensus 484 ~~~p~il~iDEid 496 (719)
...|.++++||.-
T Consensus 96 ~~~p~illlDEp~ 108 (261)
T 2eyu_A 96 REDPDVIFVGEMR 108 (261)
T ss_dssp HHCCSEEEESCCC
T ss_pred hhCCCEEEeCCCC
Confidence 6689999999973
No 261
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.41 E-value=0.00025 Score=75.78 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=26.7
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|||||||+++|++..
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456788899999999999999999999864
No 262
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.40 E-value=0.00014 Score=75.23 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|+||+|||||||+++|++.+.
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3567888999999999999999999988653
No 263
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.39 E-value=0.0003 Score=71.62 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||++.|++.+.
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567888999999999999999999988753
No 264
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.37 E-value=0.00052 Score=72.44 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=66.4
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---------CCeEEEEeccchhh--------hccCC---------------
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------MWFGE--------------- 470 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---------~~~~i~v~~~~l~~--------~~~g~--------------- 470 (719)
|++...-++|+||||+|||+++..+|... +.+.++++...... ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 55555558999999999999999999863 45667776654210 00111
Q ss_pred -ch---hhHHHHHHHHHh--CCCEEEEEeccchhhcccCCCCCCCCCchH--HHHHHHHHHhcCCCCCCcEEEEEecC
Q 005014 471 -SE---ANVREIFDKARQ--SAPCVLFFDELDSIATQRGSSVGDAGGAAD--RVLNQLLTEMDGMSAKKTVFIIGATN 540 (719)
Q Consensus 471 -se---~~i~~~f~~a~~--~~p~il~iDEid~l~~~r~~~~~~~~~~~~--~~~~~ll~~ld~~~~~~~v~vi~atn 540 (719)
.+ ..+..+....+. ..+.+|+||.+..+....-.+. +.... ..+.+++..|..+....++.||.++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~---g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR---GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG---GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 11 112233344555 6789999999999874321100 11122 23566666655544444555665543
No 265
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.37 E-value=0.00017 Score=76.42 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=31.3
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---------CCeEEEEeccc
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPE 462 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---------~~~~i~v~~~~ 462 (719)
+++...-+.|+||||+|||+|++.++... +...++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 55555559999999999999999999886 13457777654
No 266
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.36 E-value=0.0001 Score=70.70 Aligned_cols=41 Identities=34% Similarity=0.402 Sum_probs=33.7
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhh
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 190 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l 190 (719)
.+.++..++|.|||||||||+++.|++..+...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 35677889999999999999999999987666677776554
No 267
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.36 E-value=1.7e-05 Score=83.73 Aligned_cols=43 Identities=33% Similarity=0.556 Sum_probs=30.1
Q ss_pred hhhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHhCC--eEEEEec
Q 005014 418 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKG 460 (719)
Q Consensus 418 ~~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~~~--~~i~v~~ 460 (719)
.++++++....| +.|.||+|||||||.++||+.... .-|.+++
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G 65 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG 65 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECC
Confidence 344445544445 889999999999999999997632 3344444
No 268
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.34 E-value=7.4e-05 Score=79.01 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4567888899999999999999999998753
No 269
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.33 E-value=0.0005 Score=70.31 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=25.8
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
|+.++..++|+||||||||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57788889999999999999999998754
No 270
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.32 E-value=0.00033 Score=70.30 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=26.9
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||++.|++...
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467888899999999999999999988753
No 271
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.31 E-value=0.00025 Score=71.16 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|+|||||++.+++.+.
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3467888899999999999999999998764
No 272
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00063 Score=64.72 Aligned_cols=95 Identities=17% Similarity=0.310 Sum_probs=72.2
Q ss_pred HHHHhhcCCCCCCeEEEEEccCCCCCcEEEEcccCCcccCcchhhHHHHHhHHhhhcCccccCCCEEEEecCceeEEEEE
Q 005014 3 KVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKV 82 (719)
Q Consensus 3 ~~~~~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v 82 (719)
.-+++++|+..||.|+|+- ..+|.++.|.++|.+...-+++ .+.+.|..+++. ...+.+||+|.+..+...+.|.|
T Consensus 98 ~wmm~~L~l~~gd~V~i~~-~~LPkgt~vklqP~~~~Fldi~--npKavLE~~LRn-fstLT~Gd~I~i~~~~~~y~l~V 173 (208)
T 1zc1_A 98 QWMMETLGIQPGSLLQISS-TDVPLGQFVKLEPQSVDFLDIS--DPKAVLENVLRN-FSTLTVDDVIEISYNGKTFKIKI 173 (208)
T ss_dssp HHHHHHHTCCTTCEEEEEE-EECCCCSEEEEECCHHHHHTSS--CHHHHHHHHHHH-CSCEESSSEEEEEETTEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEE-eEcCCCCEEEEeECcccccccc--CHHHHHHHHhhc-CccccCCCEEEEEeCCEEEEEEE
Confidence 4689999999999999998 5799999999999764433343 234455555542 34689999999988878889999
Q ss_pred EEecCCc----eEEECCCceEEe
Q 005014 83 IETDPPE----YCVVAPDTEIFC 101 (719)
Q Consensus 83 ~~~~p~~----~~~~~~~t~~~~ 101 (719)
.++.|.. .|++..+-++.+
T Consensus 174 ~e~kP~~~~~aV~IidTDleVDf 196 (208)
T 1zc1_A 174 LEVKPESSSKSICVIETDLVTDF 196 (208)
T ss_dssp EEEECSSTTCEECCSSSCSEEEE
T ss_pred EEEcCCCCCceEEEEeCceEEEe
Confidence 9999984 566666655544
No 273
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.31 E-value=9.9e-05 Score=70.58 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=37.1
Q ss_pred ceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhhhc--------cCCc-----hhhHHHHHHHHHhCCCEEEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW--------FGES-----EANVREIFDKARQSAPCVLFF 492 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~--------~g~s-----e~~i~~~f~~a~~~~p~il~i 492 (719)
-.+++||+|+||||++..++... +.+.+.++.. +-..| .|.. ......+++.+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~-~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK-IDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec-cccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 37899999999999986666543 4454444322 10111 1110 011223333332 24679999
Q ss_pred eccchh
Q 005014 493 DELDSI 498 (719)
Q Consensus 493 DEid~l 498 (719)
||+..+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999886
No 274
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.28 E-value=0.0031 Score=71.65 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHH
Q 005014 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176 (719)
Q Consensus 120 ~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~ 176 (719)
..+.|.+..+++|.+.+... -.....|+|+|++|+|||+||+.++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 45889999999988876431 12345799999999999999998863
No 275
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.27 E-value=0.00022 Score=76.09 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=50.9
Q ss_pred hhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHhC----CeEEEEech-hh--------hhh-cccchHHHHHHHHHHH
Q 005014 144 QLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGP-EI--------MSK-LAGESESNLRKAFEEA 209 (719)
Q Consensus 144 ~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l~----~~~i~v~~~-~l--------~~~-~~g~~~~~l~~vf~~a 209 (719)
..++++.+.++..++|+||+||||||+++++++.+. ..++.+..+ ++ ... ..+.....+...+..+
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHH
Confidence 345555567788899999999999999999998753 333333321 10 000 0010111234566667
Q ss_pred HhcCCcEEEEcccc
Q 005014 210 EKNAPSIIFIDEID 223 (719)
Q Consensus 210 ~~~~p~iL~iDEid 223 (719)
....|.+|++||+-
T Consensus 206 L~~~pd~illdE~~ 219 (372)
T 2ewv_A 206 LREDPDVIFVGEMR 219 (372)
T ss_dssp TTSCCSEEEESCCC
T ss_pred hhhCcCEEEECCCC
Confidence 77789999999974
No 276
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.27 E-value=1.4e-05 Score=81.59 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=30.5
Q ss_pred hhhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHhCC--eEEEEecc
Q 005014 418 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKGP 461 (719)
Q Consensus 418 ~~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~~~--~~i~v~~~ 461 (719)
.++++++....| +.|.||+|+|||||++++++.... .-+.+++.
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~ 70 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNK 70 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCE
Confidence 344445444445 889999999999999999987632 33444443
No 277
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.27 E-value=0.0011 Score=66.73 Aligned_cols=40 Identities=38% Similarity=0.489 Sum_probs=33.5
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhh
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 190 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l 190 (719)
...+..++|.|+|||||||+++.|+..++..++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4556789999999999999999999999866667777655
No 278
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.26 E-value=0.0006 Score=70.30 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+++.++.-++|.||||+|||||++.+++.+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468889999999999999999999998875
No 279
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.26 E-value=0.00035 Score=73.95 Aligned_cols=98 Identities=17% Similarity=0.295 Sum_probs=60.6
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhC----CeEEEEecc-chh---------hhccCCchhhHHHHHHHHHhCCCEEEEE
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGP-ELL---------TMWFGESEANVREIFDKARQSAPCVLFF 492 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~----~~~i~v~~~-~l~---------~~~~g~se~~i~~~f~~a~~~~p~il~i 492 (719)
..-+++.||+||||||+.+++++... ...+.+..+ ++. ...++.........+..+-...|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 33489999999999999999998763 334443221 111 0112222234556777788889999999
Q ss_pred eccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC
Q 005014 493 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 545 (719)
Q Consensus 493 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~l 545 (719)
||+-. ......++..... +..|+.+++..+.+
T Consensus 203 DEp~d----------------~e~~~~~~~~~~~-----G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 203 GEMRD----------------LETIRLALTAAET-----GHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCCS----------------HHHHHHHHHHHHT-----TCEEEEEESCSSHH
T ss_pred CCCCC----------------HHHHHHHHHHHhc-----CCEEEEEEccChHH
Confidence 99731 2334444444331 33578888875544
No 280
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.25 E-value=0.00045 Score=69.56 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|+|||||++.+++.+.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467888899999999999999999998763
No 281
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.25 E-value=0.00021 Score=76.87 Aligned_cols=116 Identities=13% Similarity=0.208 Sum_probs=64.9
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---------CCeEEEEeccchhh--------hccCCch-------------
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------MWFGESE------------- 472 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---------~~~~i~v~~~~l~~--------~~~g~se------------- 472 (719)
|+.+..-++|+||||||||+|++.++-.. +...++++..+... ..+|-..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666669999999999999999776332 34577777654211 1112110
Q ss_pred ------hhHHHHHHHHHhCCCEEEEEeccchhhcccCCCCCCCCCch--HHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 005014 473 ------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAA--DRVLNQLLTEMDGMSAKKTVFIIGATNR 541 (719)
Q Consensus 473 ------~~i~~~f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~--~~~~~~ll~~ld~~~~~~~v~vi~atn~ 541 (719)
..+..+........|.+|++|++-.+....-.+ .++.. .+.+.+++..|..+....++.||+++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg---~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG---RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC---ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 112223334445678999999998876432111 01111 2344555555555443345666766664
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.0023 Score=63.57 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=29.4
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEec
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCING 187 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~ 187 (719)
|+.++..++|+||||+|||||+..++... +...++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67788899999999999999988776543 445555544
No 283
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.24 E-value=0.00017 Score=68.68 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=28.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
++.|+|+|+|||||||+++.||..++..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999887644
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.24 E-value=0.00019 Score=67.81 Aligned_cols=37 Identities=11% Similarity=0.303 Sum_probs=31.5
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
.-++|.|+||+||||+++.++..++.+++.++...+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 3489999999999999999999999888887765443
No 285
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.24 E-value=0.00039 Score=72.75 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=25.5
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHH
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANE 177 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~ 177 (719)
|+.++..++|+||||+|||+|+..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778888999999999999999999875
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.23 E-value=0.00019 Score=69.39 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=28.5
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
.+...++|.|||||||||+++.+|..++..++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 3445699999999999999999999999887643
No 287
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.21 E-value=0.00018 Score=73.05 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=26.3
Q ss_pred hhhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHh
Q 005014 418 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANEC 451 (719)
Q Consensus 418 ~~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~ 451 (719)
.++++++....| +.|.||+|+|||||++++++..
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344445444444 8899999999999999999875
No 288
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.21 E-value=0.0022 Score=72.93 Aligned_cols=165 Identities=15% Similarity=0.183 Sum_probs=87.3
Q ss_pred ccccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---------CCeEEEEeccc-
Q 005014 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPE- 462 (719)
Q Consensus 393 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---------~~~~i~v~~~~- 462 (719)
..+.|-+...+.|.+.+... -...+-++++||+|+|||+||+.++... +.-++.+...+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 34667777777776655321 0123458999999999999999987531 12234443321
Q ss_pred --hhhhc------cC----------CchhhHHHHH-HHHHh-CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHH
Q 005014 463 --LLTMW------FG----------ESEANVREIF-DKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 522 (719)
Q Consensus 463 --l~~~~------~g----------~se~~i~~~f-~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~ 522 (719)
+...+ .+ .....+...+ ..... ..|.+|+||+++... .+
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--------------------~l- 251 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--------------------VL- 251 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--------------------HH-
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--------------------HH-
Confidence 11110 11 1111222222 22222 257899999996521 11
Q ss_pred HhcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEe---CCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCC
Q 005014 523 EMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYI---PLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFS 599 (719)
Q Consensus 523 ~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~---~~p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~s 599 (719)
+.+. .+..||.||..+..... .. +..+.+ .+.+.++-.++|...+.............+++.+.|+.
T Consensus 252 --~~l~--~~~~ilvTsR~~~~~~~--~~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 252 --KAFD--SQCQILLTTRDKSVTDS--VM----GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp --HTTC--SSCEEEEEESCGGGGTT--CC----SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred --HHhc--CCCeEEEECCCcHHHHh--cC----CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 2222 23456667765432211 11 223344 36788888999988875421111234677888887654
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.18 E-value=0.00026 Score=66.52 Aligned_cols=30 Identities=37% Similarity=0.701 Sum_probs=26.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFF 183 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i 183 (719)
+..|+|+|||||||||+++.|++.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356999999999999999999999997544
No 290
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.18 E-value=4.1e-05 Score=81.41 Aligned_cols=42 Identities=29% Similarity=0.513 Sum_probs=29.4
Q ss_pred hhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHhCC--eEEEEec
Q 005014 419 FEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKG 460 (719)
Q Consensus 419 ~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~~~--~~i~v~~ 460 (719)
++++++....| +.|.||+|||||||.++||+.... .-+.+++
T Consensus 19 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G 64 (381)
T 3rlf_A 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE 64 (381)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECC
Confidence 33444444444 889999999999999999998632 3344444
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.17 E-value=0.00019 Score=68.75 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=32.2
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccch
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l 463 (719)
..+.-++|.||||+||||+++++++..+.+.+.+++.++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 334458999999999999999999987777888877655
No 292
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.17 E-value=0.0003 Score=67.28 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=29.2
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
...+..|+|.|+|||||||+++.|+..++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456789999999999999999999999877654
No 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.16 E-value=0.0005 Score=65.89 Aligned_cols=133 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred eeeecCCCCchhHHHHHHHHHh--------------------CCeEEEEeccc-------------------hhhhccCC
Q 005014 430 VLFYGPPGCGKTLLAKAIANEC--------------------QANFISVKGPE-------------------LLTMWFGE 470 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~--------------------~~~~i~v~~~~-------------------l~~~~~g~ 470 (719)
+.|.||+|+|||||++.+++.. ...++..+... ...+|...
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~~~~~~ 83 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVD 83 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEEC
T ss_pred EEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccceEEEc
Q ss_pred chhhHHHHHHHHHh------CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEe-c--CC
Q 005014 471 SEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA-T--NR 541 (719)
Q Consensus 471 se~~i~~~f~~a~~------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~a-t--n~ 541 (719)
...--+..+..... ..|.|+++||++.+ +......+..+...++.... +|+++ + ++
T Consensus 84 ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~-----------~~~~~~~~~~l~~~l~~~~~----~ilgti~vsh~ 148 (189)
T 2i3b_A 84 LTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKM-----------ELFSQLFIQAVRQTLSTPGT----IILGTIPVPKG 148 (189)
T ss_dssp HHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTT-----------TTTCSHHHHHHHHHHHCSSC----CEEEECCCCCS
T ss_pred chHHHHHHHHHHhhhhHhhccCCCEEEEeCCCcc-----------ccccHHHHHHHHHHHhCCCc----EEEEEeecCCC
Q ss_pred C--CCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhcc
Q 005014 542 P--DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK 579 (719)
Q Consensus 542 ~--~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~ 579 (719)
. ..+|.-..+ .-.+++.+..-+.+....-+-..+++
T Consensus 149 ~~~~~vd~i~~~--~~~~i~~~~~~nr~~~~~~i~~~~~~ 186 (189)
T 2i3b_A 149 KPLALVEEIRNR--KDVKVFNVTKENRNHLLPDIVTCVQS 186 (189)
T ss_dssp SCCTTHHHHHTT--CCSEEEECCSSSGGGHHHHHHHHHTT
T ss_pred CchHHHHHHeec--CCcEEEEeChHhHHHHHHHHHHHHHH
No 294
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.14 E-value=0.00026 Score=67.53 Aligned_cols=33 Identities=36% Similarity=0.516 Sum_probs=27.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHH-hCCeEEE
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANE-TGAFFFC 184 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~-l~~~~i~ 184 (719)
..+..|+|+|+|||||||+++.|+.. ++.+++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 44567999999999999999999999 6866553
No 295
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.13 E-value=5.2e-05 Score=80.03 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=29.3
Q ss_pred hhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHhCC--eEEEEec
Q 005014 419 FEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKG 460 (719)
Q Consensus 419 ~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~~~--~~i~v~~ 460 (719)
++++++....| +.|.||+|||||||.++||+.... .-+.+++
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 76 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 34444444444 889999999999999999987632 3344444
No 296
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.11 E-value=0.00096 Score=65.55 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=43.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechh-------hhhhcccch-H----HHHHHHHHHHHh----cC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE-------IMSKLAGES-E----SNLRKAFEEAEK----NA 213 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~-------l~~~~~g~~-~----~~l~~vf~~a~~----~~ 213 (719)
++.-++++||+|+||||++..++..+ +..++.+.... +.+. .|.. . .....+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 45568999999999999888777665 44555553211 1111 1100 0 011234444443 34
Q ss_pred CcEEEEccccccC
Q 005014 214 PSIIFIDEIDSIA 226 (719)
Q Consensus 214 p~iL~iDEid~l~ 226 (719)
+.+|+|||+.++.
T Consensus 90 ~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 90 TKVIGIDEVQFFD 102 (223)
T ss_dssp CCEEEECSGGGSC
T ss_pred CCEEEEecCccCc
Confidence 7899999998763
No 297
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.09 E-value=0.00035 Score=66.19 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=28.7
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
..+..|+|+|+|||||||+++.|+..++..++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 345679999999999999999999999987654
No 298
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.09 E-value=0.00078 Score=68.83 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=23.8
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 451 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~ 451 (719)
|+....-++|+||||+|||||++.++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555559999999999999999998654
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.06 E-value=0.00033 Score=66.61 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=28.1
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
+..++|+|||||||||+++.+|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34689999999999999999999999887654
No 300
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.06 E-value=0.00054 Score=65.40 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=19.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHH
Q 005014 154 PKGILLYGPPGSGKTLIARAVANE 177 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~ 177 (719)
+.-++++||+|+||||++..++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999998666554
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.05 E-value=0.00048 Score=66.60 Aligned_cols=37 Identities=38% Similarity=0.585 Sum_probs=29.5
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhh
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 190 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l 190 (719)
.++..++|.|||||||||+++.|++.+|.. .+++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 456789999999999999999999999764 4455443
No 302
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.05 E-value=0.00038 Score=65.18 Aligned_cols=31 Identities=23% Similarity=0.136 Sum_probs=27.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFCIN 186 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~v~ 186 (719)
.|+|.|+|||||||+++.|+..++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998776544
No 303
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.03 E-value=0.00055 Score=66.19 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=31.2
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhh
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 190 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l 190 (719)
.++..|.|.||+||||||+++.|++.+ |...+.+++..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 567789999999999999999999988 554446665444
No 304
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.03 E-value=0.0015 Score=71.69 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=30.9
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh----CCeEEEEec
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 187 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l----~~~~i~v~~ 187 (719)
|+.++.-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 68899999999999999999999987753 445655553
No 305
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.02 E-value=0.0075 Score=74.68 Aligned_cols=167 Identities=13% Similarity=0.132 Sum_probs=92.9
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHHHh-------CCeEEEEechh--
Q 005014 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-------GAFFFCINGPE-- 189 (719)
Q Consensus 119 ~~~i~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~~l-------~~~~i~v~~~~-- 189 (719)
...+.|.++.+++|.+.+... -.....|.|+|+.|+|||+||+.++... ...++.++...
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 345889999999998887431 1234569999999999999999887642 12233444222
Q ss_pred ---hh-------hhc---------ccchHHHHHHHHHHHHhcC--CcEEEEccccccCCCCCCCchHHHHHHHHHHHHHh
Q 005014 190 ---IM-------SKL---------AGESESNLRKAFEEAEKNA--PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 248 (719)
Q Consensus 190 ---l~-------~~~---------~g~~~~~l~~vf~~a~~~~--p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l 248 (719)
+. ... .......+...+....... +.+|+||+++.. .++
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------------~~~---- 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------------WVL---- 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------HHH----
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------HHH----
Confidence 00 000 0011223333344333333 789999998732 111
Q ss_pred hcccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCC-CChHHHHHHHHHHhcCCCCCCcccHHHHHHHhCCC
Q 005014 249 DGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV-PDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGY 322 (719)
Q Consensus 249 ~~~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~-P~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~ 322 (719)
..+.. ...||.||..+.-.... ......+.++. .+.++-.+++.................+++.+.|.
T Consensus 252 ~~~~~--~~~ilvTtR~~~~~~~~----~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 252 KAFDN--QCQILLTTRDKSVTDSV----MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp TTTCS--SCEEEEEESSTTTTTTC----CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred HhhcC--CCEEEEEcCCHHHHHhh----cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 22222 23455567654322111 12234567775 78888888887665432222223366778887765
No 306
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.02 E-value=0.0028 Score=62.95 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=28.2
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEec
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 460 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~ 460 (719)
|+.+..-++|+||||+|||+++..++... +.+.+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 55556669999999999999988777543 445566554
No 307
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.01 E-value=0.00044 Score=65.21 Aligned_cols=29 Identities=38% Similarity=0.577 Sum_probs=26.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
.|+|.|+|||||||+++.||..++..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999987654
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.01 E-value=0.00056 Score=64.43 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=29.0
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhh
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 190 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l 190 (719)
++..++|.|+|||||||+++.|++.+|..+ +++.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 456799999999999999999999988654 444443
No 309
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.01 E-value=0.00047 Score=64.04 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 148 SIGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 148 ~l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
++.+.++..+.|.||+|+|||||++.+++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3467788889999999999999999999987
No 310
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.99 E-value=0.0017 Score=65.51 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=31.1
Q ss_pred CceEEEECCCCCChHHHHHHHHHH---hCCeEEEEechhhh
Q 005014 154 PKGILLYGPPGSGKTLIARAVANE---TGAFFFCINGPEIM 191 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~---l~~~~i~v~~~~l~ 191 (719)
+..|+|.|+|||||||+++.|+.. .|..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 457999999999999999999998 67777766665544
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.99 E-value=0.0005 Score=64.56 Aligned_cols=29 Identities=24% Similarity=0.657 Sum_probs=25.5
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFI 456 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i 456 (719)
..++|.|||||||||+++.+|+.++..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34899999999999999999999887554
No 312
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.98 E-value=0.00044 Score=66.16 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=27.4
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
.+.-++|.|+||+||||+++.++..++..++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34558999999999999999999998877654
No 313
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.98 E-value=0.003 Score=70.18 Aligned_cols=75 Identities=16% Similarity=0.288 Sum_probs=52.6
Q ss_pred CEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC--CCCcccCCCCCcceEEEeCCC
Q 005014 487 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPLP 564 (719)
Q Consensus 487 p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~--~ld~allrpgRf~~~i~~~~p 564 (719)
+-+|+|||+..+...- .......+..+..+ ....++.+|.+|.+|. .|+..++. -|..+|.+...
T Consensus 344 ~ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred cEEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 3689999999887531 11122333333333 3455799999999997 78877765 78889999999
Q ss_pred CHHHHHHHHH
Q 005014 565 DEESRLQIFK 574 (719)
Q Consensus 565 ~~~~r~~Il~ 574 (719)
+..+...|+.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9888877773
No 314
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.96 E-value=0.0089 Score=73.99 Aligned_cols=166 Identities=13% Similarity=0.151 Sum_probs=92.1
Q ss_pred cccccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHHHh---C----CeEEEEeccch---
Q 005014 394 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---Q----ANFISVKGPEL--- 463 (719)
Q Consensus 394 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~~~---~----~~~i~v~~~~l--- 463 (719)
.+.|.+...+.|.+.+... -...+-+.|+|+.|+|||+||+.+++.. . ...+.++.+..
T Consensus 125 ~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred eeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 4667777777777655321 0123448899999999999999988652 1 12234433221
Q ss_pred --h-------hhc---------cCCchhhHHHHHHHHHhC--CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHH
Q 005014 464 --L-------TMW---------FGESEANVREIFDKARQS--APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 523 (719)
Q Consensus 464 --~-------~~~---------~g~se~~i~~~f~~a~~~--~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ 523 (719)
. ... .......+...+...-.. .+.+|+||+++... .
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-----------------------~ 250 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-----------------------V 250 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-----------------------H
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-----------------------H
Confidence 0 000 011112233333322222 37899999987531 1
Q ss_pred hcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCC-CCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCC
Q 005014 524 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL-PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFS 599 (719)
Q Consensus 524 ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~-p~~~~r~~Il~~~~~~~~~~~~~d~~~la~~~~~~s 599 (719)
++.+.. +.-||.||..+...... . .....+.+++ .+.++-.++|..+.....-........+++.+.|..
T Consensus 251 ~~~~~~--~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 251 LKAFDN--QCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp HTTTCS--SCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred HHhhcC--CCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 222222 23566677755443211 1 2345678875 888898999988774433222233667777777653
No 315
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.96 E-value=0.00043 Score=65.84 Aligned_cols=30 Identities=37% Similarity=0.528 Sum_probs=26.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
..|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 359999999999999999999999987654
No 316
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.96 E-value=0.00064 Score=72.55 Aligned_cols=79 Identities=22% Similarity=0.372 Sum_probs=48.3
Q ss_pred hhhhhcCCCCcceeeecCCCCchhHHHHHHHHHhC----CeEEEEecc-ch-hh---hcc-----CCchhhHHHHHHHHH
Q 005014 418 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGP-EL-LT---MWF-----GESEANVREIFDKAR 483 (719)
Q Consensus 418 ~~~~~~~~~~~gill~GppGtGKT~la~~la~~~~----~~~i~v~~~-~l-~~---~~~-----g~se~~i~~~f~~a~ 483 (719)
.+.++...+...++|.||+|+||||+++++++... ...+.+..+ ++ .. .|+ |......+.....+-
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 44454555555589999999999999999998753 233333321 11 00 011 112223445555666
Q ss_pred hCCCEEEEEeccc
Q 005014 484 QSAPCVLFFDELD 496 (719)
Q Consensus 484 ~~~p~il~iDEid 496 (719)
...|.+|++||+-
T Consensus 207 ~~~pd~illdE~~ 219 (372)
T 2ewv_A 207 REDPDVIFVGEMR 219 (372)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEEECCCC
Confidence 6789999999973
No 317
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.96 E-value=0.00047 Score=64.53 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=27.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
..|+|.|++||||||+++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999999887643
No 318
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.95 E-value=0.00067 Score=71.60 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=30.5
Q ss_pred hhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHhCC--eEEEEecc
Q 005014 419 FEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKGP 461 (719)
Q Consensus 419 ~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~~~--~~i~v~~~ 461 (719)
++++++....| +.|.||+|+|||||++++++.... .-+.+++.
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~ 90 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ 90 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCE
Confidence 44445554455 889999999999999999987632 34455443
No 319
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.94 E-value=0.00089 Score=69.04 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=24.6
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 451 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~ 451 (719)
++.+..-++|.||||+|||||++.+|...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55555569999999999999999999875
No 320
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.94 E-value=0.00016 Score=76.76 Aligned_cols=33 Identities=33% Similarity=0.660 Sum_probs=25.5
Q ss_pred hhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHh
Q 005014 419 FEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANEC 451 (719)
Q Consensus 419 ~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~ 451 (719)
++++++....| +.|.||+|||||||.++||+..
T Consensus 27 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33444444444 8899999999999999999875
No 321
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.94 E-value=0.00071 Score=70.75 Aligned_cols=113 Identities=14% Similarity=0.177 Sum_probs=64.7
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh---------------C----CeEEEEeccchh--h------hccCC-----
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------------Q----ANFISVKGPELL--T------MWFGE----- 470 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~---------------~----~~~i~v~~~~l~--~------~~~g~----- 470 (719)
|+++..-++|+||||+|||++|..+|... + .+.++++..+-. . .-.|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45555569999999999999999998752 2 466777654421 0 00111
Q ss_pred ----------c-hh---hHHHHHHHHHh-CCCEEEEEeccchhhcccCCCCCCCCCch--HHHHHHHHHHhcCCCCCCcE
Q 005014 471 ----------S-EA---NVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAA--DRVLNQLLTEMDGMSAKKTV 533 (719)
Q Consensus 471 ----------s-e~---~i~~~f~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~--~~~~~~ll~~ld~~~~~~~v 533 (719)
+ +. .+..+....+. ..+.+|+||.+..+......+ . +... ...+.+++..|..+....++
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~--~-~~~~~r~~~~~~~~~~L~~la~~~~~ 250 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG--R-GKLAERQQKLGRHMATLNKLADLFNC 250 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC--T-TSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC--C-ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 11 12233444455 668899999999987432111 0 1111 23456666666555444445
Q ss_pred EEEEe
Q 005014 534 FIIGA 538 (719)
Q Consensus 534 ~vi~a 538 (719)
.||++
T Consensus 251 ~vi~~ 255 (322)
T 2i1q_A 251 VVLVT 255 (322)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.93 E-value=0.00055 Score=65.11 Aligned_cols=30 Identities=33% Similarity=0.576 Sum_probs=26.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFF 183 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i 183 (719)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456999999999999999999999987654
No 323
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.92 E-value=0.00071 Score=75.70 Aligned_cols=29 Identities=38% Similarity=0.475 Sum_probs=26.0
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
.+.++..+.|.||+|||||||+++|++..
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678889999999999999999999875
No 324
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.91 E-value=0.013 Score=57.15 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=24.0
Q ss_pred ceeeecCCCCchhHHHHHHHHHh---CCeEEEEe
Q 005014 429 GVLFYGPPGCGKTLLAKAIANEC---QANFISVK 459 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~---~~~~i~v~ 459 (719)
.+++.|+||+||||++-.+|..+ |...+.+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 38999999999999999888775 45544333
No 325
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.91 E-value=0.0013 Score=67.58 Aligned_cols=40 Identities=35% Similarity=0.525 Sum_probs=32.1
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhh
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 191 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~ 191 (719)
..+..++|.|||||||||+++.|+..++..++.+++..+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 4566799999999999999999999985555677764443
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.90 E-value=0.00057 Score=64.45 Aligned_cols=29 Identities=34% Similarity=0.635 Sum_probs=26.3
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
.++|.|||||||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999987764
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.90 E-value=0.0006 Score=65.86 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
.+..|+|.|+|||||||+++.|+..++..++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345699999999999999999999999876543
No 328
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.89 E-value=0.00054 Score=64.10 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=26.4
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
-++|.|||||||||+++.++..++..++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 378999999999999999999999877543
No 329
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.89 E-value=0.00088 Score=63.37 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=32.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhh
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 190 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l 190 (719)
++..|+|.|++||||||+++.|+..+ |.+++.+++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 46679999999999999999999987 888887775443
No 330
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.88 E-value=0.00075 Score=63.87 Aligned_cols=31 Identities=35% Similarity=0.651 Sum_probs=27.2
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
+..++|+|+||+||||+++.++..++..++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 3459999999999999999999999877764
No 331
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.88 E-value=0.00065 Score=65.70 Aligned_cols=31 Identities=35% Similarity=0.596 Sum_probs=27.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
+..|+|.|+|||||||+++.|++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999876554
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.00062 Score=65.11 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=27.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4579999999999999999999999976543
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.87 E-value=0.0006 Score=65.34 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=28.4
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
++..|+|.|+|||||||+++.|+..++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456799999999999999999999999875543
No 334
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.87 E-value=0.0016 Score=77.01 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHH
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANE 177 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~ 177 (719)
.+.++..++|.||+|+||||+++.++..
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 3456778999999999999999998753
No 335
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.87 E-value=0.0078 Score=65.05 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=48.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhh----------hh----------cccchHHHHHHHHHHH
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM----------SK----------LAGESESNLRKAFEEA 209 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~----------~~----------~~g~~~~~l~~vf~~a 209 (719)
++..|+++|++|+||||++..||..+ |..+..+++.... .. ........+...++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999998765 5555555543210 00 0112233455667777
Q ss_pred HhcCCcEEEEcccccc
Q 005014 210 EKNAPSIIFIDEIDSI 225 (719)
Q Consensus 210 ~~~~p~iL~iDEid~l 225 (719)
....+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777889999987433
No 336
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.86 E-value=0.00064 Score=68.44 Aligned_cols=32 Identities=41% Similarity=0.514 Sum_probs=28.7
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEec
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFCING 187 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~v~~ 187 (719)
.++|+|||||||||+++.||+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58999999999999999999999988776654
No 337
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.86 E-value=0.00087 Score=65.60 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=31.3
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhh
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 191 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~ 191 (719)
+..++.|+|.|||||||+|.|+.|+..++... ++..+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 45667799999999999999999999998754 4444443
No 338
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.86 E-value=0.0013 Score=66.12 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=31.4
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccch
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l 463 (719)
+..++|.||||+||||+++.++..++.+++.+++..+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3458999999999999999999998876777777665
No 339
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.86 E-value=0.00016 Score=68.14 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.3
Q ss_pred CcceeeecCCCCchhHHHHH
Q 005014 427 SKGVLFYGPPGCGKTLLAKA 446 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~ 446 (719)
+.-++|.||||||||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34488999999999999994
No 340
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.85 E-value=0.00055 Score=68.68 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=28.8
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
+..|.|.|++||||||+++.||+.++..++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 67899999999999999999999999876643
No 341
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.85 E-value=0.0009 Score=65.69 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=27.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
++..|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 35679999999999999999999999976554
No 342
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.85 E-value=0.0034 Score=69.23 Aligned_cols=76 Identities=16% Similarity=0.311 Sum_probs=51.1
Q ss_pred CE-EEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCC--CCCcccCCCCCcceEEEeCC
Q 005014 487 PC-VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 563 (719)
Q Consensus 487 p~-il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~--~ld~allrpgRf~~~i~~~~ 563 (719)
|- ++++||...+...- .. -+..++..+-......++.+|.+|.+|. .++..+.. -|..+|.|..
T Consensus 297 P~ivlvIDE~~~ll~~~----------~~-~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV----------GK-KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH----------HH-HHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh----------hH-HHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999998876421 11 1223333332222334688889999987 57776665 7888999999
Q ss_pred CCHHHHHHHHHH
Q 005014 564 PDEESRLQIFKA 575 (719)
Q Consensus 564 p~~~~r~~Il~~ 575 (719)
.+..+...|+..
T Consensus 364 ~s~~dsr~ilg~ 375 (512)
T 2ius_A 364 SSKIDSRTILDQ 375 (512)
T ss_dssp SSHHHHHHHHSS
T ss_pred CCHHHHHHhcCC
Confidence 999998888743
No 343
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.85 E-value=0.0031 Score=65.12 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=45.0
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhhh-------hc-------------ccchHHHHHHHHH
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS-------KL-------------AGESESNLRKAFE 207 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~~-------~~-------------~g~~~~~l~~vf~ 207 (719)
..++..++|+||+|+||||++..+|..+ +..+..+++..... .+ .+.........+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3567789999999999999999999875 44454444321100 00 0111112233445
Q ss_pred HHHhcCCcEEEEcccc
Q 005014 208 EAEKNAPSIIFIDEID 223 (719)
Q Consensus 208 ~a~~~~p~iL~iDEid 223 (719)
.+....+.++++|+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566778899999764
No 344
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.83 E-value=0.00028 Score=74.00 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=50.5
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCC--eEEEEechhhhh-----h---cccchHHHHHHHHHHHHhcCCcEEEEc
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMS-----K---LAGESESNLRKAFEEAEKNAPSIIFID 220 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~~--~~i~v~~~~l~~-----~---~~g~~~~~l~~vf~~a~~~~p~iL~iD 220 (719)
+.++..++|.||+|||||||++++++.... ..+.+++..... . +........+..+..+....|.+|++|
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 345678999999999999999999998642 345555532111 0 110012345566777778899999999
Q ss_pred cccc
Q 005014 221 EIDS 224 (719)
Q Consensus 221 Eid~ 224 (719)
|.-.
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9753
No 345
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.82 E-value=0.0018 Score=73.65 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=27.6
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+++++.+.|+||+|||||||++.+++...
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 4578899999999999999999999988764
No 346
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.80 E-value=0.00084 Score=63.95 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=25.8
Q ss_pred cceeeecCCCCchhHHHHHHHHH-hCCeEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANE-CQANFIS 457 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~-~~~~~i~ 457 (719)
..++|+|+|||||||+++.++.. ++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 34999999999999999999998 6766654
No 347
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.79 E-value=0.0039 Score=68.78 Aligned_cols=76 Identities=17% Similarity=0.333 Sum_probs=47.6
Q ss_pred CCc-EEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCC--CCCHHhhccCCCceEEEeCCCC
Q 005014 213 APS-IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--SIDPALRRFGRFDREIDIGVPD 289 (719)
Q Consensus 213 ~p~-iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~--~ld~al~r~~Rf~~~i~i~~P~ 289 (719)
.|. +++|||+..++... ...+...+..+... .....+-+|.+|++|. .++..++. .+...|.+...+
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~-gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQK-ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHH-CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHH-hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 354 78999998765311 12222223222222 2223566667777776 57888876 688889999888
Q ss_pred hHHHHHHHH
Q 005014 290 EVGRLEVLR 298 (719)
Q Consensus 290 ~~~R~~il~ 298 (719)
..+...++.
T Consensus 366 ~~dsr~ilg 374 (512)
T 2ius_A 366 KIDSRTILD 374 (512)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877764
No 348
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.79 E-value=0.00075 Score=63.27 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=26.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
..|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 359999999999999999999999987654
No 349
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.79 E-value=0.00066 Score=67.05 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=28.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
..+..|+|.|+|||||||+++.|+..++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999998766543
No 350
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.78 E-value=0.0017 Score=73.62 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.4
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+++++.+.|+||+|||||||++.+++...
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4568889999999999999999999988764
No 351
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.76 E-value=0.0016 Score=64.02 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=43.1
Q ss_pred eeeecCCCCchhHHHHHHHHHh---CCeEEEEeccc-------hhhhccCCch-----hhHHHHHHHHHh----CCCEEE
Q 005014 430 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE-------LLTMWFGESE-----ANVREIFDKARQ----SAPCVL 490 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~---~~~~i~v~~~~-------l~~~~~g~se-----~~i~~~f~~a~~----~~p~il 490 (719)
++++||+|+||||++..++..+ +...+.+++.. +.+. .|... .....+++.++. ..+.+|
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 7889999999999988887665 44555554222 1111 22110 122356666655 347899
Q ss_pred EEeccchh
Q 005014 491 FFDELDSI 498 (719)
Q Consensus 491 ~iDEid~l 498 (719)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999875
No 352
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.76 E-value=0.00075 Score=70.73 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=50.2
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHhC--CeEEEEeccchhh-----h---ccCCchhhHHHHHHHHHhCCCEEEEEecc
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT-----M---WFGESEANVREIFDKARQSAPCVLFFDEL 495 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~~--~~~i~v~~~~l~~-----~---~~g~se~~i~~~f~~a~~~~p~il~iDEi 495 (719)
+...+++.||+|+|||||++++++... ...+.+.+..... . ++.......+..+..|-...|.++++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 344599999999999999999999864 3566676543211 1 22102345566777777888999999997
Q ss_pred ch
Q 005014 496 DS 497 (719)
Q Consensus 496 d~ 497 (719)
-+
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 43
No 353
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.76 E-value=0.0027 Score=65.81 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=30.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEEEechh
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 189 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~ 189 (719)
..|+|+||+||||||+++.||..++..++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 47999999999999999999999998888776543
No 354
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.75 E-value=0.00092 Score=63.69 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=23.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+..|+|.|+|||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999887
No 355
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.74 E-value=0.00089 Score=64.70 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=25.2
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
..++..+.|.||+||||||+++.|++...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45677899999999999999999999865
No 356
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.74 E-value=0.00093 Score=66.80 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
.++..|+|.|||||||||+++.|+..++..++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567899999999999999999999998765543
No 357
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.74 E-value=0.00069 Score=64.15 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=23.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFF 183 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i 183 (719)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457999999999999999999999998766
No 358
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.74 E-value=0.012 Score=66.23 Aligned_cols=144 Identities=12% Similarity=0.086 Sum_probs=80.3
Q ss_pred cchHHHHHHHHHHHHcccCChhhHhhhCCCCCceEEEECCCCCChHHHHHHHHH----HhCCeE---EEEechh-----h
Q 005014 123 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN----ETGAFF---FCINGPE-----I 190 (719)
Q Consensus 123 ~G~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~vLL~GppGtGKTtla~~la~----~l~~~~---i~v~~~~-----l 190 (719)
.|.+..+++|.+.+... +-.....|.|+|+.|+||||||+.+++ .....| ++++.+. .
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 48999999998877421 112346799999999999999999996 333222 3333222 1
Q ss_pred -------hhhccc------------chHHHHHHHHHHHHhcC-CcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 005014 191 -------MSKLAG------------ESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 250 (719)
Q Consensus 191 -------~~~~~g------------~~~~~l~~vf~~a~~~~-p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~ 250 (719)
...... .....+...+....... +.+|++|+++... ++ .+...
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~-~~~~~ 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI-RWAQE 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH-HHHHH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh-ccccc
Confidence 000000 01122334444444554 8899999987521 11 11111
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 251 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 251 ~~~~~~vivI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
. ...||.||.... +.. ..+.....+.++..+.++-.+++..+.
T Consensus 264 --~--gs~ilvTTR~~~-v~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 264 --L--RLRCLVTTRDVE-ISN---AASQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp --T--TCEEEEEESBGG-GGG---GCCSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred --C--CCEEEEEcCCHH-HHH---HcCCCCeEEECCCCCHHHHHHHHHHHh
Confidence 2 223444665431 111 111133568888899988888887663
No 359
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.74 E-value=0.00074 Score=63.68 Aligned_cols=27 Identities=44% Similarity=0.609 Sum_probs=23.1
Q ss_pred ceEEEECCCCCChHHHHHHHHH-HhCCe
Q 005014 155 KGILLYGPPGSGKTLIARAVAN-ETGAF 181 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~-~l~~~ 181 (719)
..|+|.|+|||||||+++.|+. .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 4699999999999999999998 45543
No 360
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.74 E-value=0.0011 Score=61.97 Aligned_cols=29 Identities=41% Similarity=0.631 Sum_probs=25.5
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
.|+|.|||||||||+++.| ..+|..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8888876543
No 361
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.73 E-value=0.00073 Score=68.04 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=28.0
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEEec
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISVKG 460 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v~~ 460 (719)
-++|.|||||||||+|+.||..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 37899999999999999999999988776654
No 362
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.73 E-value=0.00083 Score=64.52 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.0
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4579999999999999999999999966543
No 363
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.72 E-value=0.0029 Score=69.59 Aligned_cols=96 Identities=23% Similarity=0.311 Sum_probs=56.7
Q ss_pred ceeeecCCCCchhHHHHHHHHHh---CC-eEEEEeccch----hhhccCCchhhHHHHHHHH----------------Hh
Q 005014 429 GVLFYGPPGCGKTLLAKAIANEC---QA-NFISVKGPEL----LTMWFGESEANVREIFDKA----------------RQ 484 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~---~~-~~i~v~~~~l----~~~~~g~se~~i~~~f~~a----------------~~ 484 (719)
.++|.|+||||||+++.+++..+ +. ..+.+....- +....|.....+..++... ..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~ 126 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDL 126 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccc
Confidence 69999999999999999998775 22 3343332211 1112232333344443311 01
Q ss_pred CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 005014 485 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 541 (719)
Q Consensus 485 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~ 541 (719)
....++++||+..+. ...+..|+..+. ...+++++|-.+.
T Consensus 127 ~~~~~iiiDE~~~~~--------------~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 127 AKCRVLICDEVSMYD--------------RKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp SSCSEEEESCGGGCC--------------HHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred cCCCEEEEECchhCC--------------HHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 134699999997652 335556665553 4567888887765
No 364
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.72 E-value=0.0015 Score=73.99 Aligned_cols=31 Identities=13% Similarity=0.312 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+++++.+.|+||+|||||||++.+++...
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4567889999999999999999999988764
No 365
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.72 E-value=0.0016 Score=68.70 Aligned_cols=41 Identities=27% Similarity=0.458 Sum_probs=28.6
Q ss_pred hhhcCCCCcc--eeeecCCCCchhHHHHHHHHHhC--CeEEEEec
Q 005014 420 EKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKG 460 (719)
Q Consensus 420 ~~~~~~~~~g--ill~GppGtGKT~la~~la~~~~--~~~i~v~~ 460 (719)
+++++....| +.|.||+|||||||.+++|+... ..-+.+++
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD 64 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECC
Confidence 3444444444 88999999999999999998753 23344443
No 366
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.72 E-value=0.00081 Score=66.03 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=25.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.+++.+.|+||+|||||||++.|++...
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3466788899999999999999999999873
No 367
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.72 E-value=0.0042 Score=68.22 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=21.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHh
Q 005014 156 GILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l 178 (719)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998776
No 368
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.71 E-value=0.00091 Score=63.50 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=26.3
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
-++|.|+|||||||+++.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 38999999999999999999999988764
No 369
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.69 E-value=0.014 Score=64.98 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=49.6
Q ss_pred cEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCCC--CCCHHhhccCCCceEEEeCCCChHH
Q 005014 215 SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--SIDPALRRFGRFDREIDIGVPDEVG 292 (719)
Q Consensus 215 ~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~~--~ld~al~r~~Rf~~~i~i~~P~~~~ 292 (719)
.+|+|||++.+..... ..+...|..++.. .....|-+|.+|.+|. .++..++. .|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Iar~-GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIAQK-ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHHHH-CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHHHH-HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 4799999997764321 1222333333332 2345677777888886 78888887 788889999888877
Q ss_pred HHHHHH
Q 005014 293 RLEVLR 298 (719)
Q Consensus 293 R~~il~ 298 (719)
...||.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 777763
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.68 E-value=0.0011 Score=63.17 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=27.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4579999999999999999999999976554
No 371
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.68 E-value=0.0011 Score=64.12 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
.+..|+|.|++||||||+++.|+..++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 345699999999999999999999998765543
No 372
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.68 E-value=0.0012 Score=63.83 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=28.0
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccch
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l 463 (719)
+.-++|.|||||||||+++++++.++. +.+++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 345889999999999999999999864 44555554
No 373
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.67 E-value=0.0011 Score=61.94 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
.|+|.|+|||||||+++.|+..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999999977654
No 374
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.67 E-value=0.0018 Score=62.45 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=28.6
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccch
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 463 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l 463 (719)
+.-+.|.||+||||||+++++++.+ +...+.+++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4458899999999999999999987 443346665554
No 375
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.67 E-value=0.0037 Score=70.86 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=26.7
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+++++.+.|+||+|||||||++.+++..
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356788899999999999999999998875
No 376
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.67 E-value=0.0011 Score=62.05 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=27.1
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
.++|.|+|||||||+++.||..++.+++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999887653
No 377
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.67 E-value=0.013 Score=61.45 Aligned_cols=154 Identities=17% Similarity=0.127 Sum_probs=87.7
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CC-e--EEEEechhhhhhcccchHHHHHHHHHHHHhcCCcEEEEccccc-cC
Q 005014 154 PKGILLYGPPGSGKTLIARAVANET---GA-F--FFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDS-IA 226 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l---~~-~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~iL~iDEid~-l~ 226 (719)
...+||+||+|.||++.++.++..+ +. . .+.+++. .+....+..+-..+......+++|||++. +.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-------TDWNAIFSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-------CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-------CCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence 3479999999999999999998865 22 2 2222210 11222222222233335567999999987 53
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCC-----CCCCCHHhhccCCCceEEEeCCCChHHHHHHHHHHh
Q 005014 227 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR-----PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 301 (719)
Q Consensus 227 ~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~-----~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~il~~~~ 301 (719)
.. ..+.|+..++.... ..++|+.+++. ...+.+++.+ |. ..+.+..++..+....++..+
T Consensus 91 ~~-----------~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 91 AA-----------INEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp TT-----------HHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHH
T ss_pred hH-----------HHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHH
Confidence 21 23456677765432 34444444431 1234556665 44 578899999888888877666
Q ss_pred cCCCCC-CcccHHHHHHHhCCCccccHHHHHHH
Q 005014 302 KNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 333 (719)
Q Consensus 302 ~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 333 (719)
+...+. +...+..++..+. +|+..+..+
T Consensus 156 ~~~g~~i~~~a~~~l~~~~~----gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLELDDAANQVLCYCYE----GNLLALAQA 184 (343)
T ss_dssp HHTTCEECHHHHHHHHHSST----TCHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHhc----hHHHHHHHH
Confidence 543322 2223555555554 355444443
No 378
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.66 E-value=0.00086 Score=65.73 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=27.8
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
+..|+|.|+|||||||+++.|+..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35699999999999999999999999776543
No 379
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.66 E-value=0.0015 Score=64.70 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
.+..|+|.|+|||||||+++.|+..++..++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 345799999999999999999999999766543
No 380
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.64 E-value=0.001 Score=65.06 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=26.3
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999998766544
No 381
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.64 E-value=0.0011 Score=64.98 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=31.2
Q ss_pred CCCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhhh
Q 005014 425 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 466 (719)
Q Consensus 425 ~~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 466 (719)
+.++-++|.||||+||+|.|+.||..++.+ .++..+++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHHH
Confidence 445568899999999999999999998754 5555566543
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.64 E-value=0.0011 Score=64.80 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.3
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 489999999999999999999998776543
No 383
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0023 Score=72.45 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=25.2
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.++..+.|.||+|+|||||++.|++.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4678889999999999999999999865
No 384
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.63 E-value=0.0011 Score=61.85 Aligned_cols=29 Identities=38% Similarity=0.555 Sum_probs=24.8
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
-++|.|||||||||+++.+ ...+.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3789999999999999999 8888776653
No 385
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.63 E-value=0.007 Score=60.08 Aligned_cols=33 Identities=33% Similarity=0.276 Sum_probs=27.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEEEec
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFCING 187 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~ 187 (719)
..++|+||+|+|||.++.+++...+...+.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 359999999999999999998888766655543
No 386
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.62 E-value=0.0015 Score=64.19 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=26.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEE
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFF 183 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i 183 (719)
..|.|.||+||||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46999999999999999999999997654
No 387
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.62 E-value=0.0011 Score=65.19 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.0
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEE
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFF 183 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i 183 (719)
.+..|+|.|+|||||||+++.|+..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3457999999999999999999999997544
No 388
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.62 E-value=0.0033 Score=71.35 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=27.4
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+++++.+.|.||+|||||||++.+++...
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 4567888999999999999999999988764
No 389
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.61 E-value=0.0013 Score=61.69 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=26.1
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
-++|.|+|||||||+++.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999999987654
No 390
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.61 E-value=0.0058 Score=66.03 Aligned_cols=73 Identities=25% Similarity=0.168 Sum_probs=45.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechhhh----------hhcc---------c-chHHHHHHHHHHH
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM----------SKLA---------G-ESESNLRKAFEEA 209 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~l~----------~~~~---------g-~~~~~l~~vf~~a 209 (719)
++..+++.||+|+||||++..||..+ +..+..+++.... .... + .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46679999999999999999998765 5555555532110 0000 0 1112234445555
Q ss_pred HhcCCcEEEEcccccc
Q 005014 210 EKNAPSIIFIDEIDSI 225 (719)
Q Consensus 210 ~~~~p~iL~iDEid~l 225 (719)
....+.++++|....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567889999987543
No 391
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.60 E-value=0.0012 Score=62.75 Aligned_cols=28 Identities=39% Similarity=0.659 Sum_probs=24.9
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFI 456 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i 456 (719)
-++|.|+|||||||+++.++..++..++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4889999999999999999999886654
No 392
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.60 E-value=0.0046 Score=67.62 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=30.7
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh----CCeEEEEec
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 187 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l----~~~~i~v~~ 187 (719)
|+.++.-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68899999999999999999999887653 445665554
No 393
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.60 E-value=0.0013 Score=67.72 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=29.8
Q ss_pred hhCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Q 005014 148 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 181 (719)
Q Consensus 148 ~l~~~~~~~vLL~GppGtGKTtla~~la~~l~~~ 181 (719)
++.+.++..+.|+||+|||||||++.|++.+...
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 4578899999999999999999999999988433
No 394
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.60 E-value=0.0026 Score=71.84 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=24.7
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCeEEEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANET---GAFFFCI 185 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v 185 (719)
...++|.|||||||||++.+++..+ +..++.+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3579999999999999999998754 4444433
No 395
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.59 E-value=0.0015 Score=63.40 Aligned_cols=34 Identities=32% Similarity=0.621 Sum_probs=27.8
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEechhhh
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 191 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l~ 191 (719)
.|+|.|||||||+|.|+.|+..++...+ +..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 4889999999999999999999997654 444443
No 396
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.59 E-value=0.0012 Score=63.13 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=27.3
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
+.-++|.|+|||||||+++.+|..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34589999999999999999999998776543
No 397
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.58 E-value=0.0015 Score=61.50 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=26.7
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEEeccch
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l 463 (719)
-++|.||||+||||+++.+++.++..+ +++.++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 488999999999999999999887544 455444
No 398
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.58 E-value=0.0012 Score=67.71 Aligned_cols=38 Identities=37% Similarity=0.517 Sum_probs=30.6
Q ss_pred CcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
+.-++|.||||+||||+++.++..+...++.|++..+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 34589999999999999999999885566777764443
No 399
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.58 E-value=0.0013 Score=63.85 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=27.9
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
++|.||||+||+|.|+.||..++.+. ++..+++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 68899999999999999999987654 55556653
No 400
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.58 E-value=0.0026 Score=71.72 Aligned_cols=98 Identities=21% Similarity=0.326 Sum_probs=56.7
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccch----hhhccCCchhhHHHHHHHH---------HhCCCEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL----LTMWFGESEANVREIFDKA---------RQSAPCVLF 491 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l----~~~~~g~se~~i~~~f~~a---------~~~~p~il~ 491 (719)
..+++.||||||||+++++++..+ +.+.+.+....- +....|.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458899999999999999998764 444444432211 1111222233333333211 112357999
Q ss_pred EeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005014 492 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 542 (719)
Q Consensus 492 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~ 542 (719)
+||+..+. ...+..|+. .+....++++++-.+..
T Consensus 285 IDEasml~--------------~~~~~~Ll~---~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 285 VDEVSMMG--------------DALMLSLLA---AVPPGARVLLVGDTDQL 318 (574)
T ss_dssp ECCGGGCC--------------HHHHHHHHT---TSCTTCEEEEEECTTSC
T ss_pred EcCccCCC--------------HHHHHHHHH---hCcCCCEEEEEeccccc
Confidence 99987652 234455543 34456678888877653
No 401
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.57 E-value=0.0015 Score=63.02 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=26.1
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
.-++|.|+||+||||+++.|+..++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 458999999999999999999998866553
No 402
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.57 E-value=0.0013 Score=64.01 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.4
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
.+.++..+.|.||+|||||||+++|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467788899999999999999999999875
No 403
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.57 E-value=0.0076 Score=62.62 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=30.7
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEec
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCING 187 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~ 187 (719)
|+.++.-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 68899999999999999999999988654 345555553
No 404
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.57 E-value=0.0014 Score=62.08 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+++.+.|+||+|||||||++.|++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999999864
No 405
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.57 E-value=0.00096 Score=69.80 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=26.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
.+++|+|+|||||||++++||+.++..|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 359999999999999999999998876643
No 406
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.57 E-value=0.0037 Score=62.16 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=28.5
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHH----hCCeEEEEe
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFCIN 186 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~----l~~~~i~v~ 186 (719)
|+.++.-++|+|+||+|||+++..+|.. .+..+++++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 5778889999999999999999876533 355555554
No 407
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.57 E-value=0.0015 Score=64.06 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=26.7
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
.-++|.|+|||||||+++.||..++..++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3489999999999999999999998766543
No 408
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.54 E-value=0.0016 Score=62.83 Aligned_cols=30 Identities=40% Similarity=0.557 Sum_probs=26.3
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
-++|.|+|||||||+++.|+..++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 488999999999999999999998776543
No 409
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.54 E-value=0.0014 Score=65.44 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=26.6
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANETGAF 181 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l~~~ 181 (719)
.+.++.-+.|.||+||||||+++.|++.+|..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 45667779999999999999999999988743
No 410
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.53 E-value=0.0017 Score=64.94 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=27.0
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEE
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFF 183 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i 183 (719)
.+..++|.|||||||||+++.|+..++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3568999999999999999999999886543
No 411
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.53 E-value=0.0013 Score=62.63 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.4
Q ss_pred ceeeecCCCCchhHHHHHHHHHhC
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQ 452 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~ 452 (719)
-++|.|||||||||+++.|+..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999887
No 412
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.52 E-value=0.0015 Score=64.48 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=26.8
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
.-++|.|+|||||||+++.||..++..++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4589999999999999999999988766543
No 413
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.52 E-value=0.0015 Score=62.28 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.9
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
.-++|.|+|||||||+++.++..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 348999999999999999999998876543
No 414
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.51 E-value=0.0021 Score=64.56 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=27.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEE
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGAFFF 183 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~~~i 183 (719)
++..|.|.||+||||||+++.|+..+|..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4567999999999999999999999997654
No 415
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.51 E-value=0.0015 Score=63.19 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.9
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.++..+.|.||+||||||+++.|++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567789999999999999999999987
No 416
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.51 E-value=0.0017 Score=61.86 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=26.1
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
.-++|.|+|||||||+++.++..++..++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 458999999999999999999998866554
No 417
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.51 E-value=0.0038 Score=73.71 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=54.2
Q ss_pred cceeeecCCCCchhHHHHHHHHHh-----CC----eEEEE----------eccchhhhccCCchhhHHHHHHHHH-hCCC
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC-----QA----NFISV----------KGPELLTMWFGESEANVREIFDKAR-QSAP 487 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~-----~~----~~i~v----------~~~~l~~~~~g~se~~i~~~f~~a~-~~~p 487 (719)
.-++|.||+|+||||+.+.++... +. ....+ ...+.............+++-..++ ...|
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCC
Confidence 348999999999999999988542 21 01111 1111111111111111222222221 4678
Q ss_pred EEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 005014 488 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 546 (719)
Q Consensus 488 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld 546 (719)
+++++||.-+-.. ......+...++..+.. ..+..+|.+|+..+..+
T Consensus 754 ~LlLLDEP~~GlD---------~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 754 SLVILDELGRGTS---------THDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CEEEEESTTTTSC---------HHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred CEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 9999999765321 11223444466665531 12357888898876543
No 418
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.50 E-value=0.0011 Score=68.81 Aligned_cols=36 Identities=33% Similarity=0.535 Sum_probs=30.8
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEEEeccch
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l 463 (719)
..++|+||+|||||++++.+|..++..++.++.-.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 358999999999999999999999988888765433
No 419
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.49 E-value=0.0057 Score=72.45 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=22.0
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHH
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVAN 176 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~ 176 (719)
+..+..++|.||+|+||||+++.++.
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999854
No 420
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.48 E-value=0.0035 Score=68.78 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=29.3
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHHh----CCeEEEEec
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKG 460 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~~----~~~~i~v~~ 460 (719)
|+.+..-++|.|+||+|||+++..+|... +.+.+.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666669999999999999999988754 345666553
No 421
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.46 E-value=0.0015 Score=63.89 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=26.4
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
.++|.|+|||||||+++.||..++.+++..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 489999999999999999999998776653
No 422
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.0039 Score=62.04 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=27.8
Q ss_pred cCCCCcceeeecCCCCchhHHHHHHHHH----hCCeEEEEec
Q 005014 423 GMSPSKGVLFYGPPGCGKTLLAKAIANE----CQANFISVKG 460 (719)
Q Consensus 423 ~~~~~~gill~GppGtGKT~la~~la~~----~~~~~i~v~~ 460 (719)
|+++..-++++|+||+|||++|..+|.. .+.+.+.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5666666999999999999999877643 2455555543
No 423
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.45 E-value=0.0013 Score=61.99 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=23.7
Q ss_pred ceeeecCCCCchhHHHHHHHH-HhCCeEEEEec
Q 005014 429 GVLFYGPPGCGKTLLAKAIAN-ECQANFISVKG 460 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~-~~~~~~i~v~~ 460 (719)
-++|.|+||+||||+++.++. ..+ +..++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~ 34 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPG--FYNINR 34 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTT--EEEECH
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCC--cEEecH
Confidence 488999999999999999998 444 344443
No 424
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.45 E-value=0.014 Score=60.94 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=25.0
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
..++..+.|+||+|+||||+++.||+.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999999999999876
No 425
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.45 E-value=0.0021 Score=61.84 Aligned_cols=28 Identities=29% Similarity=0.597 Sum_probs=25.5
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEE
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFF 183 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i 183 (719)
.|+|.|++||||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5899999999999999999999998654
No 426
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.45 E-value=0.0016 Score=63.51 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=25.1
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
++|.|||||||||+++.++..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999988665543
No 427
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.45 E-value=0.0018 Score=60.33 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=25.5
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
++|.|+|||||||+++.++..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999999877664
No 428
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.44 E-value=0.0024 Score=63.07 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=27.1
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
+..+.|.||+||||||+++.|+..++..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4579999999999999999999999976543
No 429
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.44 E-value=0.0015 Score=63.07 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=25.1
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
.|.|.|++||||||+++.|++ +|..++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 589999999999999999999 88665543
No 430
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0014 Score=65.66 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=27.0
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
..+.|.|++||||||+++.+|..++..|+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 459999999999999999999999987765
No 431
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.43 E-value=0.0018 Score=62.89 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=25.4
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
.++..+.|.||+|||||||++.|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5677899999999999999999999875
No 432
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.43 E-value=0.01 Score=64.13 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=46.2
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchhh-------------------hccCCc-hhhHHHHHHHHH
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-------------------MWFGES-EANVREIFDKAR 483 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~-------------------~~~g~s-e~~i~~~f~~a~ 483 (719)
+.-++++|+||+||||++..+|..+ +.....+.+.-... .+.+.. ...++..++.++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4558999999999999999999765 45555555432110 011111 223456677777
Q ss_pred hCCCEEEEEeccc
Q 005014 484 QSAPCVLFFDELD 496 (719)
Q Consensus 484 ~~~p~il~iDEid 496 (719)
...+.++++|..-
T Consensus 180 ~~~~DvVIIDTaG 192 (443)
T 3dm5_A 180 SKGVDIIIVDTAG 192 (443)
T ss_dssp HTTCSEEEEECCC
T ss_pred hCCCCEEEEECCC
Confidence 7677899999874
No 433
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.43 E-value=0.0013 Score=62.19 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=22.2
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFI 456 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i 456 (719)
.-++|.|+|||||||+++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34889999999999999999999998776
No 434
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.42 E-value=0.0018 Score=63.26 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.2
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
++|.|||||||||+++.++..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999988766543
No 435
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.42 E-value=0.0021 Score=64.93 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=30.2
Q ss_pred cceeeecCCCCchhHHHHHHHHH---hCCeEEEEeccchh
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANE---CQANFISVKGPELL 464 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~---~~~~~i~v~~~~l~ 464 (719)
.-++|.|+||+||||+|+.++.. .+..++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 34899999999999999999997 67777766665544
No 436
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.41 E-value=0.0018 Score=62.11 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=26.0
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
.-++|.|+|||||||+++.++..++..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 358999999999999999999999866554
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.41 E-value=0.0022 Score=63.49 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=26.5
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
.++|.|+|||||||+++.||..++..++..
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 489999999999999999999998776543
No 438
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.41 E-value=0.002 Score=60.86 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.2
Q ss_pred cceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccch
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 463 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l 463 (719)
.-+.|.|++||||||+++.++..+ +.+++.+++..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 348899999999999999999987 888888775443
No 439
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.39 E-value=0.0034 Score=64.87 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=42.7
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchh-------hhc---c---------CCch-hhHHHHHHHH
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL-------TMW---F---------GESE-ANVREIFDKA 482 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~-------~~~---~---------g~se-~~i~~~f~~a 482 (719)
.+.-+++.||+|+||||++..+|..+ +.....+.+.-.. ..| . |... ..+...+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 34458999999999999999999875 3344434332110 011 0 1111 1123345555
Q ss_pred HhCCCEEEEEeccc
Q 005014 483 RQSAPCVLFFDELD 496 (719)
Q Consensus 483 ~~~~p~il~iDEid 496 (719)
....|.++++|+.-
T Consensus 183 ~~~~~dvvIiDtpg 196 (306)
T 1vma_A 183 LARNKDVVIIDTAG 196 (306)
T ss_dssp HHTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 66778899999864
No 440
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.39 E-value=0.014 Score=55.62 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=65.5
Q ss_pred ceeeecCCCCchhHHHHHHHHHh---CCeEEEE---ecc------chhhhc-----------cCCc------hhhHHHHH
Q 005014 429 GVLFYGPPGCGKTLLAKAIANEC---QANFISV---KGP------ELLTMW-----------FGES------EANVREIF 479 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~---~~~~i~v---~~~------~l~~~~-----------~g~s------e~~i~~~f 479 (719)
.+++|+++|.||||+|-.+|-.. |.....+ ++. +++... .-.. +......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 38999999999999999988664 5555555 331 233322 1011 23445555
Q ss_pred HHHHh----CCCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccCCCCCc
Q 005014 480 DKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRL 555 (719)
Q Consensus 480 ~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf 555 (719)
..++. ....+|++||+-.....+-- . ...++..+..- ..+.-||.|+|.+ +++|+. .-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~----~~ev~~~l~~R--p~~~~vIlTGr~a---p~~l~e--~A 171 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-------P----LEEVISALNAR--PGHQTVIITGRGC---HRDILD--LA 171 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-------C----HHHHHHHHHTS--CTTCEEEEECSSC---CHHHHH--HC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-------C----HHHHHHHHHhC--cCCCEEEEECCCC---cHHHHH--hC
Confidence 55544 44789999999664432211 1 23455555432 2345677788864 344443 45
Q ss_pred ceEEEe
Q 005014 556 DQLIYI 561 (719)
Q Consensus 556 ~~~i~~ 561 (719)
|.+-++
T Consensus 172 D~VTem 177 (196)
T 1g5t_A 172 DTVSEL 177 (196)
T ss_dssp SEEEEC
T ss_pred cceeee
Confidence 544444
No 441
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.39 E-value=0.007 Score=65.29 Aligned_cols=71 Identities=23% Similarity=0.414 Sum_probs=43.0
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCC---eEEEEech-hhh-h----h-cccchHHHHHHHHHHHHhcCCcEEEEccc
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGP-EIM-S----K-LAGESESNLRKAFEEAEKNAPSIIFIDEI 222 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~---~~i~v~~~-~l~-~----~-~~g~~~~~l~~vf~~a~~~~p~iL~iDEi 222 (719)
++..++|.||+||||||+++++++.+.. .++.+..+ +.. . . ......-.....+..+..+.|.++++.|+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 4456999999999999999999998753 23333211 110 0 0 00011112234445566688999999886
Q ss_pred c
Q 005014 223 D 223 (719)
Q Consensus 223 d 223 (719)
.
T Consensus 246 R 246 (418)
T 1p9r_A 246 R 246 (418)
T ss_dssp C
T ss_pred C
Confidence 4
No 442
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.39 E-value=0.0026 Score=60.61 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=27.1
Q ss_pred eEEEECCCCCChHHHHHHHHHHh---CCeEEEEe
Q 005014 156 GILLYGPPGSGKTLIARAVANET---GAFFFCIN 186 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l---~~~~i~v~ 186 (719)
.|+|.|++||||||+++.|+..+ |..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48999999999999999999988 77777654
No 443
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.38 E-value=0.0024 Score=62.72 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=25.5
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
-+.|.|||||||||+++.+++.++.+++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 48899999999999999999998876553
No 444
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.38 E-value=0.0022 Score=61.77 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=28.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh-CCeEEEEe
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET-GAFFFCIN 186 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l-~~~~i~v~ 186 (719)
.+..|+|.|++||||||+++.|+..+ +..++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35679999999999999999999998 46565544
No 445
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.37 E-value=0.0018 Score=62.49 Aligned_cols=27 Identities=30% Similarity=0.669 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+++.+.|+||+|+|||||++.|++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999999764
No 446
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.37 E-value=0.0023 Score=62.45 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=26.3
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEE
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFCI 185 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~v 185 (719)
.|+|.|+|||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998766543
No 447
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.37 E-value=0.015 Score=55.46 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=56.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCeEEEE---ech------hhhhhcc-------------c----chHHHHHHH
Q 005014 155 KGILLYGPPGSGKTLIARAVANET---GAFFFCI---NGP------EIMSKLA-------------G----ESESNLRKA 205 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l---~~~~i~v---~~~------~l~~~~~-------------g----~~~~~l~~v 205 (719)
..|++++++|.||||+|-.+|-.. |..+..+ .+. .+..... . .........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999998887653 5665555 221 2222221 0 012333444
Q ss_pred HHHHHh----cCCcEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCcEEEEEecCCC
Q 005014 206 FEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 266 (719)
Q Consensus 206 f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~vivI~atn~~ 266 (719)
++.+.. ....+|++||+.....-.-.+. ..++.++..... ..-||.|.+.+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~--------~ev~~~l~~Rp~--~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPL--------EEVISALNARPG--HQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH--------HHHHHHHHTSCT--TCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCH--------HHHHHHHHhCcC--CCEEEEECCCC
Confidence 444443 4578999999965433222121 235555554322 33444466654
No 448
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.36 E-value=0.001 Score=66.20 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=26.5
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|||||||++.|++..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788899999999999999999998764
No 449
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.35 E-value=0.021 Score=59.59 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=34.5
Q ss_pred cCChhhHhhh-CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEe
Q 005014 140 LRHPQLFKSI-GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCIN 186 (719)
Q Consensus 140 l~~~~~~~~l-~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~ 186 (719)
...+.+-+-+ |+.++.-++|.|+||+|||+|+..+|... +.++.+++
T Consensus 31 TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 31 TGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3344443333 68899999999999999999999987763 55655554
No 450
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.33 E-value=0.015 Score=55.44 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=41.3
Q ss_pred eeeecCCCCchh-HHHHHHHHHh--CCeEEEEeccchhhhccCCch------------hhHHHHHHHHHhCCCEEEEEec
Q 005014 430 VLFYGPPGCGKT-LLAKAIANEC--QANFISVKGPELLTMWFGESE------------ANVREIFDKARQSAPCVLFFDE 494 (719)
Q Consensus 430 ill~GppGtGKT-~la~~la~~~--~~~~i~v~~~~l~~~~~g~se------------~~i~~~f~~a~~~~p~il~iDE 494 (719)
.++|||.|+||| .|.+++.+.. +.+.+.+++. +-..|...-. .....+++..+ ...+|+|||
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDE 99 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDE 99 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEc
Confidence 789999999999 8889888754 5677777633 2222211000 11122333333 246999999
Q ss_pred cchh
Q 005014 495 LDSI 498 (719)
Q Consensus 495 id~l 498 (719)
+..+
T Consensus 100 aQFf 103 (195)
T 1w4r_A 100 GQFF 103 (195)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9997
No 451
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.33 E-value=0.0076 Score=70.44 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHH
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANE 177 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~ 177 (719)
.++..++|.||+|+||||+++.+++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 35567999999999999999999875
No 452
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.33 E-value=0.012 Score=60.56 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=27.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh----CCeEEEEec
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 187 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l----~~~~i~v~~ 187 (719)
++..++|+||+|+||||++..||..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56789999999999999999998765 435555544
No 453
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.33 E-value=0.0027 Score=62.46 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=25.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
.|+|.|+|||||||+++.|+..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 48999999999999999999999875443
No 454
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.33 E-value=0.023 Score=63.87 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=78.8
Q ss_pred ccHHHHHHhhhccccCCCChhhhhhhcCCCCcceeeecCCCCchhHHHHHHHH----HhCC-----eEEEEeccc---h-
Q 005014 397 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN----ECQA-----NFISVKGPE---L- 463 (719)
Q Consensus 397 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~la~~la~----~~~~-----~~i~v~~~~---l- 463 (719)
|.+..++.|.+.+... +-...+.+.++|++|+|||+||+.+++ .... -++.++... .
T Consensus 132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 7777777777655210 111234588999999999999999996 2222 233333321 1
Q ss_pred ------hhhccCCc-------------hhhHHHHHHHHHhC-CCEEEEEeccchhhcccCCCCCCCCCchHHHHHHHHHH
Q 005014 464 ------LTMWFGES-------------EANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 523 (719)
Q Consensus 464 ------~~~~~g~s-------------e~~i~~~f~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ 523 (719)
... +|.. ...+...+...-.. .+.+|++|+++... .+ .+ ..
T Consensus 202 ~~~~~il~~-l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~---------------~~--~~-~~ 262 (549)
T 2a5y_B 202 DLFTDILLM-LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE---------------TI--RW-AQ 262 (549)
T ss_dssp HHHHHHHHH-HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH---------------HH--HH-HH
T ss_pred HHHHHHHHH-HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch---------------hh--cc-cc
Confidence 111 1110 11122333333234 37899999997631 11 11 11
Q ss_pred hcCCCCCCcEEEEEecCCCCCCCcccCCCCCcceEEEeCCCCHHHHHHHHHHHhc
Q 005014 524 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR 578 (719)
Q Consensus 524 ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~ 578 (719)
. .+.-||.||+...... . . +..+..+.+++.+.++-.++|..+..
T Consensus 263 ~------~gs~ilvTTR~~~v~~-~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN-A-A--SQTCEFIEVTSLEIDECYDFLEAYGM 307 (549)
T ss_dssp H------TTCEEEEEESBGGGGG-G-C--CSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred c------CCCEEEEEcCCHHHHH-H-c--CCCCeEEECCCCCHHHHHHHHHHHhc
Confidence 1 2235666776433211 1 1 12346789999999999999988753
No 455
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.32 E-value=0.002 Score=63.31 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=26.0
Q ss_pred cceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
.-++|.|||||||||+++.||..++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 458999999999999999999999875543
No 456
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.32 E-value=0.016 Score=59.51 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=25.9
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh----CCeEEEEec
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKG 460 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~----~~~~i~v~~ 460 (719)
+.-++|.||+|+||||++..+|..+ |.....+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4458999999999999999999765 334444443
No 457
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.32 E-value=0.0024 Score=61.78 Aligned_cols=28 Identities=25% Similarity=0.100 Sum_probs=25.1
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCe
Q 005014 154 PKGILLYGPPGSGKTLIARAVANETGAF 181 (719)
Q Consensus 154 ~~~vLL~GppGtGKTtla~~la~~l~~~ 181 (719)
+..|+|.|+|||||||+++.|+..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4579999999999999999999998763
No 458
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.32 E-value=0.0011 Score=66.95 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++.+.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467888899999999999999999998654
No 459
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.32 E-value=0.0022 Score=62.32 Aligned_cols=28 Identities=39% Similarity=0.449 Sum_probs=24.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
.++..+.|.||+|||||||++.|++.++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566799999999999999999999987
No 460
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.32 E-value=0.002 Score=62.62 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCC
Q 005014 153 PPKGILLYGPPGSGKTLIARAVANETGA 180 (719)
Q Consensus 153 ~~~~vLL~GppGtGKTtla~~la~~l~~ 180 (719)
++.-++|+||+|+||||+++.|++.++.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 5667999999999999999999998753
No 461
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.31 E-value=0.0029 Score=61.56 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhC----CeEEEEechhh
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEI 190 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~----~~~i~v~~~~l 190 (719)
+.++..|+|.|++||||||+++.|++.++ ..++.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45667899999999999999999998765 44666665443
No 462
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.31 E-value=0.0026 Score=63.48 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=29.6
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHhCCeEEEEeccchhh
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 465 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 465 (719)
.+.-++|.||||+||||+++.|+..++..++ +..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r 65 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLR 65 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHH
Confidence 3445999999999999999999998876554 4445443
No 463
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.30 E-value=0.0025 Score=61.71 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=26.3
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCC
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETGA 180 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~~ 180 (719)
..++..++|+|||||||||+++.|+..++.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 456778999999999999999999998853
No 464
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.30 E-value=0.0049 Score=69.87 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=25.4
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.++..+.|.||+|+|||||+++|++.+
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678889999999999999999999875
No 465
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.30 E-value=0.0024 Score=61.63 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=25.9
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
-++|.|+|||||||+++.++..++..++..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 488999999999999999999988765543
No 466
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.29 E-value=0.0053 Score=69.53 Aligned_cols=45 Identities=29% Similarity=0.419 Sum_probs=32.2
Q ss_pred hhhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHhCC--eEEEEeccc
Q 005014 418 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE 462 (719)
Q Consensus 418 ~~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~~~--~~i~v~~~~ 462 (719)
.++++++..+.| +.|.||+|+|||||++++++.... .-+.+++.+
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 404 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 455555554444 899999999999999999988642 345555533
No 467
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.28 E-value=0.0018 Score=61.71 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.5
Q ss_pred eEEEECCCCCChHHHHHHHHHHhC
Q 005014 156 GILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~ 179 (719)
.|+|.|+|||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999886
No 468
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.28 E-value=0.0021 Score=62.19 Aligned_cols=27 Identities=37% Similarity=0.379 Sum_probs=24.0
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEE
Q 005014 156 GILLYGPPGSGKTLIARAVANETGAFFF 183 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l~~~~i 183 (719)
.|.|.||+||||||+++.|++ +|..++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 589999999999999999998 777654
No 469
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.27 E-value=0.0033 Score=69.75 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=48.8
Q ss_pred CCcceeeecCCCCchhHHHHHHHHHhC--CeEEEEeccc-hhh---hc--------cCCchhhHHHHHHHHHhCCCEEEE
Q 005014 426 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPE-LLT---MW--------FGESEANVREIFDKARQSAPCVLF 491 (719)
Q Consensus 426 ~~~gill~GppGtGKT~la~~la~~~~--~~~i~v~~~~-l~~---~~--------~g~se~~i~~~f~~a~~~~p~il~ 491 (719)
.+..+++.||+|+||||+++++++... ...+.+.++. +.- .+ ++.....+..+...+-.+.|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 445699999999999999999999874 4566776543 210 00 111223455566666678899999
Q ss_pred Eeccc
Q 005014 492 FDELD 496 (719)
Q Consensus 492 iDEid 496 (719)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99983
No 470
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.27 E-value=0.0033 Score=60.07 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=26.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHh---CCeEEEEe
Q 005014 156 GILLYGPPGSGKTLIARAVANET---GAFFFCIN 186 (719)
Q Consensus 156 ~vLL~GppGtGKTtla~~la~~l---~~~~i~v~ 186 (719)
-|.|.|++||||||+++.|+..+ |..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 48999999999999999999998 88776553
No 471
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.27 E-value=0.0045 Score=58.79 Aligned_cols=37 Identities=32% Similarity=0.347 Sum_probs=29.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC---CeEEEEech
Q 005014 152 KPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGP 188 (719)
Q Consensus 152 ~~~~~vLL~GppGtGKTtla~~la~~l~---~~~i~v~~~ 188 (719)
.++..|+|.|+|||||||+++.++..++ ..+..+++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 4567799999999999999999998874 334455543
No 472
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.27 E-value=0.0022 Score=61.09 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=22.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC
Q 005014 155 KGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.|.||+|+||||+++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999999875
No 473
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.26 E-value=0.0013 Score=65.86 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567888999999999999999999988653
No 474
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.26 E-value=0.001 Score=64.99 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=26.2
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
.+.++..+.|.||+|||||||++++++...
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456788899999999999999999988654
No 475
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.25 E-value=0.012 Score=65.68 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=51.9
Q ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEechh----hhhh---------------cc---------cch
Q 005014 150 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE----IMSK---------------LA---------GES 198 (719)
Q Consensus 150 ~~~~~~~vLL~GppGtGKTtla~~la~~l---~~~~i~v~~~~----l~~~---------------~~---------g~~ 198 (719)
++.++..++|.||||||||||++.+++.. |...+++...+ +... .. -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 67888899999999999999999998765 33344443221 1000 00 023
Q ss_pred HHHHHHHHHHHHhcCCcEEEEccccccC
Q 005014 199 ESNLRKAFEEAEKNAPSIIFIDEIDSIA 226 (719)
Q Consensus 199 ~~~l~~vf~~a~~~~p~iL~iDEid~l~ 226 (719)
.+..+.++..+....|.+|++|=+..+-
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 4566677777878899999999555443
No 476
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.25 E-value=0.003 Score=60.65 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.7
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+...+++.++|+||+|+|||||++.|++...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3345677899999999999999999999875
No 477
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.24 E-value=0.0029 Score=60.25 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=27.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEEEechhh
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 190 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~v~~~~l 190 (719)
..++|.|||||||||+++.|++..+.. +.+++.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~d~~ 37 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGDII 37 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCe-EEEcccch
Confidence 458999999999999999999866542 45555444
No 478
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.24 E-value=0.0026 Score=61.23 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=25.3
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
++|.|++||||||+++.|+..++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 7899999999999999999999887654
No 479
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.24 E-value=0.00097 Score=75.91 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=31.7
Q ss_pred hhhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHhCC--eEEEEeccc
Q 005014 418 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE 462 (719)
Q Consensus 418 ~~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~~~--~~i~v~~~~ 462 (719)
.++++++..+.| +.|.||+|+|||||++++++.... .-+.+++.+
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 418 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEE
Confidence 445555444444 999999999999999999988642 345555433
No 480
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.23 E-value=0.0016 Score=66.09 Aligned_cols=30 Identities=30% Similarity=0.566 Sum_probs=26.4
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHh
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l 178 (719)
+.+.++..+.|.||+|||||||++.|++..
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346788899999999999999999999863
No 481
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.23 E-value=0.002 Score=63.19 Aligned_cols=34 Identities=29% Similarity=0.257 Sum_probs=21.9
Q ss_pred hhhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHh
Q 005014 418 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANEC 451 (719)
Q Consensus 418 ~~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~ 451 (719)
.++++++....| +.|.||+|+|||||+++|++..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344445554444 8899999999999999999976
No 482
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.21 E-value=0.0011 Score=69.25 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=26.2
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
.++|+||||+||||+++++|..++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 48999999999999999999999887744
No 483
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.21 E-value=0.0025 Score=62.14 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=25.5
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEEE
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQANFISV 458 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~~i~v 458 (719)
++|.|+|||||||+++.|+..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999988766543
No 484
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.21 E-value=0.0014 Score=64.93 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=20.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHH-HHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVA-NETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la-~~l~ 179 (719)
+.+.++..+.|.||+||||||+++.|+ +...
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 345677889999999999999999999 8764
No 485
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.21 E-value=0.0026 Score=61.40 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.2
Q ss_pred ceeeecCCCCchhHHHHHHHHHhCCeEEE
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQANFIS 457 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~~~~i~ 457 (719)
-+.|.|++||||||+++.+++ ++.+++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 378999999999999999999 7766554
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0068 Score=68.65 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=22.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q 005014 155 KGILLYGPPGSGKTLIARAVANET 178 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l 178 (719)
..+.|.||+|+|||||+++|++.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 559999999999999999999875
No 487
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.20 E-value=0.0007 Score=76.87 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=32.7
Q ss_pred hhhhhcCCCCcc--eeeecCCCCchhHHHHHHHHHhCC--eEEEEeccch
Q 005014 418 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 463 (719)
Q Consensus 418 ~~~~~~~~~~~g--ill~GppGtGKT~la~~la~~~~~--~~i~v~~~~l 463 (719)
.++++++..+.| +.|.||+|+|||||++++++.... .-+.+++.++
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i 407 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEc
Confidence 455555544444 999999999999999999987642 3455555443
No 488
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.19 E-value=0.0014 Score=72.81 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=47.7
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCC--eEEEEechh-hhhh---c--------ccchHHHHHHHHHHHHhcCCcE
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPE-IMSK---L--------AGESESNLRKAFEEAEKNAPSI 216 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~~--~~i~v~~~~-l~~~---~--------~g~~~~~l~~vf~~a~~~~p~i 216 (719)
+..+.+++|.||+||||||+++++++.+.. ..+.+.+.. +.-. . .+...-.+...+..+..+.|.+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 345678999999999999999999988743 345555432 2100 0 0111112344555666789999
Q ss_pred EEEcccc
Q 005014 217 IFIDEID 223 (719)
Q Consensus 217 L~iDEid 223 (719)
+++.|+-
T Consensus 337 iivgEir 343 (511)
T 2oap_1 337 IIVGEVR 343 (511)
T ss_dssp EEESCCC
T ss_pred EEeCCcC
Confidence 9999964
No 489
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.19 E-value=0.002 Score=62.49 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=26.5
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHh-CCeE
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANET-GAFF 182 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l-~~~~ 182 (719)
+.++..|.|.|++||||||+++.|++.+ +..+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 4556679999999999999999999987 4443
No 490
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.19 E-value=0.0012 Score=65.79 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||++.|++...
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456788899999999999999999998654
No 491
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.19 E-value=0.003 Score=61.94 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=25.1
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 151 VKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 151 ~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
..++..+.|.||+|+|||||+++|++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46777899999999999999999999876
No 492
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.18 E-value=0.003 Score=62.11 Aligned_cols=33 Identities=21% Similarity=0.519 Sum_probs=26.7
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEEEeccchh
Q 005014 430 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464 (719)
Q Consensus 430 ill~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 464 (719)
++|.|+|||||||+++.++..++..++ +..+++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~ 35 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIF 35 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHH
Confidence 789999999999999999999886554 443443
No 493
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.18 E-value=0.0013 Score=65.14 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||++++++.+.
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3467888999999999999999999998654
No 494
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.17 E-value=0.0033 Score=60.50 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=27.5
Q ss_pred cceeeecCCCCchhHHHHHHHHHh-CCeEEEEe
Q 005014 428 KGVLFYGPPGCGKTLLAKAIANEC-QANFISVK 459 (719)
Q Consensus 428 ~gill~GppGtGKT~la~~la~~~-~~~~i~v~ 459 (719)
.-++|.|++||||||+++.++..+ +.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 348999999999999999999988 57777665
No 495
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.17 E-value=0.0029 Score=60.64 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=26.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEE
Q 005014 155 KGILLYGPPGSGKTLIARAVANETGAFFFC 184 (719)
Q Consensus 155 ~~vLL~GppGtGKTtla~~la~~l~~~~i~ 184 (719)
..|.|+|++||||||+++.++..+|.+++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 358999999999999999999998876654
No 496
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.17 E-value=0.0015 Score=65.56 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=25.8
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHH
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANE 177 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~ 177 (719)
+.+.++..+.|.||+|||||||++.|++.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678888999999999999999999985
No 497
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.17 E-value=0.0027 Score=58.78 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.3
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC 451 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~ 451 (719)
..-+.|.||+|+|||||++++++..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3348899999999999999999987
No 498
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.15 E-value=0.0015 Score=65.89 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=26.9
Q ss_pred hCCCCCceEEEECCCCCChHHHHHHHHHHhC
Q 005014 149 IGVKPPKGILLYGPPGSGKTLIARAVANETG 179 (719)
Q Consensus 149 l~~~~~~~vLL~GppGtGKTtla~~la~~l~ 179 (719)
+.+.++..+.|.||+|||||||+++|++...
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567888999999999999999999988643
No 499
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.15 E-value=0.011 Score=64.00 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=43.1
Q ss_pred CcceeeecCCCCchhHHHHHHHHHh---CCeEEEEeccchh----------hhccC---------Cch-hhHHHHHHHHH
Q 005014 427 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----------TMWFG---------ESE-ANVREIFDKAR 483 (719)
Q Consensus 427 ~~gill~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~----------~~~~g---------~se-~~i~~~f~~a~ 483 (719)
+.-+++.||+|+||||++..+|..+ +.....+.+.-.. ....| ... .........+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4458899999999999999999765 4455444432110 01111 111 11234455555
Q ss_pred hCCCEEEEEeccch
Q 005014 484 QSAPCVLFFDELDS 497 (719)
Q Consensus 484 ~~~p~il~iDEid~ 497 (719)
...+.++++|....
T Consensus 177 ~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 177 KNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTCSEEEEEECCC
T ss_pred hcCCCEEEEECCCC
Confidence 55778999998743
No 500
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.14 E-value=0.0022 Score=61.02 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=26.4
Q ss_pred ceeeecCCCCchhHHHHHHHHHhC---CeEEEEeccch
Q 005014 429 GVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL 463 (719)
Q Consensus 429 gill~GppGtGKT~la~~la~~~~---~~~i~v~~~~l 463 (719)
-++|.|+|||||||+++.|+..++ ..+..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 378999999999999999999875 23444443333
Done!