BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005015
(719 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 1123 bits (2904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/692 (79%), Positives = 612/692 (88%), Gaps = 2/692 (0%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 143
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGY 119
RP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE L+EVGY
Sbjct: 144 RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGY 203
Query: 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 179
DDVGG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKTLIARAVANETG
Sbjct: 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 180 AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 239
AFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKTHGEVERR
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323
Query: 240 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 299
IVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRRFGRFDRE+DIG+PD GRLE+L+I
Sbjct: 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQI 383
Query: 300 HTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILN 359
HTKNMKL+DDVDLE++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++N
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMN 443
Query: 360 SMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKF 419
S+AVT + F+ AL SNPSALRETVVEVP V WEDIGGLE+VKRELQE VQYPVEHP+KF
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Query: 420 EKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIF 479
KFGM+PSKGVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVREIF
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563
Query: 480 DKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGAT 539
DKARQ+APCVLFFDELDSIA +NQ+LTEMDGMS KK VFIIGAT
Sbjct: 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Query: 540 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFS 599
NRPDIIDPA+LRPGRLDQLIYIPLPDE+SR+ I KA LRKSPV+KDVDL LAK T GFS
Sbjct: 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFS 683
Query: 600 GADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYA 659
GAD+TEICQRACK AIRE+IE +I RER R NP I+ HFEE+M++A
Sbjct: 684 GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 743
Query: 660 RRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 691
RRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 744 RRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 1122 bits (2902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/692 (79%), Positives = 612/692 (88%), Gaps = 2/692 (0%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 143
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGY 119
RP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE L+EVGY
Sbjct: 144 RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGY 203
Query: 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 179
DD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKTLIARAVANETG
Sbjct: 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 180 AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 239
AFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKTHGEVERR
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323
Query: 240 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 299
IVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRRFGRFDRE+DIG+PD GRLE+L+I
Sbjct: 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQI 383
Query: 300 HTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILN 359
HTKNMKL+DDVDLE++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++N
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMN 443
Query: 360 SMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKF 419
S+AVT + F+ AL SNPSALRETVVEVP V WEDIGGLE+VKRELQE VQYPVEHP+KF
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Query: 420 EKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIF 479
KFGM+PSKGVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVREIF
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563
Query: 480 DKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGAT 539
DKARQ+APCVLFFDELDSIA +NQ+LTEMDGMS KK VFIIGAT
Sbjct: 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Query: 540 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFS 599
NRPDIIDPA+LRPGRLDQLIYIPLPDE+SR+ I KA LRKSPV+KDVDL LAK T GFS
Sbjct: 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFS 683
Query: 600 GADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYA 659
GAD+TEICQRACK AIRE+IE +I RER R NP I+ HFEE+M++A
Sbjct: 684 GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 743
Query: 660 RRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 691
RRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 744 RRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/398 (81%), Positives = 369/398 (92%), Gaps = 1/398 (0%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 84 MNAVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 143
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGY 119
RP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE L+EVGY
Sbjct: 144 RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGY 203
Query: 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 179
DD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKTLIARAVANETG
Sbjct: 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 180 AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 239
AFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKTHGEVERR
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323
Query: 240 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 299
IVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRRFGRFDRE+DIG+PD GRLE+L+I
Sbjct: 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQI 383
Query: 300 HTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILN 359
HTKNMKL+DDVDLE++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++N
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMN 443
Query: 360 SMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGG 397
S+AVT + F+ AL SNPSALRETVVEVP V WEDIGG
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 449
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 450 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 509
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 510 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 569
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 570 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 620
L+I + + ++ DVDL +A T G GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/398 (81%), Positives = 369/398 (92%), Gaps = 1/398 (0%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 143
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGY 119
RP+RKGD+FLV GGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE L+EVGY
Sbjct: 144 RPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGY 203
Query: 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 179
DD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKTLIARAVANETG
Sbjct: 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 180 AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 239
AFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKTHGEVERR
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323
Query: 240 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 299
IVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRRFGRFDRE+DIG+PD GRLE+L+I
Sbjct: 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQI 383
Query: 300 HTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILN 359
HTKNMKL+DDVDLE++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++N
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMN 443
Query: 360 SMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGG 397
S+AVT + F+ AL SNPSALRETVVEVP V WEDIGG
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 449
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 450 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 509
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 510 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 569
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 570 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 620
L+I + + ++ DVDL +A T G GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/398 (81%), Positives = 369/398 (92%), Gaps = 1/398 (0%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN+VVR+NLRV LGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 84 MNRVVRNNLRVGLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 143
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGY 119
RP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE L+EVGY
Sbjct: 144 RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGY 203
Query: 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 179
DD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKTLIARAVANETG
Sbjct: 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 180 AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 239
AFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKTHGEVERR
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323
Query: 240 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 299
IVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRRFGRFDRE+DIG+PD GRLE+L+I
Sbjct: 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQI 383
Query: 300 HTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILN 359
HTKNMKL+DDVDLE++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++N
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMN 443
Query: 360 SMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGG 397
S+AVT + F+ AL SNPSALRETVVEVP V WEDIGG
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 449
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 450 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 509
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 510 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 569
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 570 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 620
L+I + + ++ DVDL +A T G GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/373 (81%), Positives = 349/373 (93%), Gaps = 1/373 (0%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 143
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGY 119
RP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE L+EVGY
Sbjct: 144 RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGY 203
Query: 120 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 179
DDVGG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GILLYGPPG+GKTLIARAVANETG
Sbjct: 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 180 AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 239
AFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+IIFIDE+D+IAPKREKTHGEVERR
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323
Query: 240 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 299
IVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRRFGRFDRE+DIG+PD GRLE+L+I
Sbjct: 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQI 383
Query: 300 HTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILN 359
HTKNMKL+DDVDLE++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++N
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMN 443
Query: 360 SMAVTDEHFKTAL 372
S+AVT + F+ AL
Sbjct: 444 SLAVTMDDFRWAL 456
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 449
V ++D+GG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 450 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 509
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 510 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 569
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 570 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 620
L+I + + ++ DVDL +A T G GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 445 bits (1145), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/301 (76%), Positives = 248/301 (82%)
Query: 379 ALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGC 438
ALRETVVEVP V WEDIGGLE+VKRELQE VQYPVEHP+KF KFGM+PSKGVLFYGPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 439 GKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 498
GKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVREIFDKARQ+APCVLFFDELDSI
Sbjct: 61 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 120
Query: 499 ATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQL 558
A +NQ+LTEMDGMS KK VFIIGATNRPDIIDPA+LRPGRLDQL
Sbjct: 121 AKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180
Query: 559 IYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 618
IYIPLPDE+SR+ I KA LRKSPV+KDVDL LAK T GFSGAD+TEICQRACK AIRE+
Sbjct: 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240
Query: 619 IEKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQAFAQTL 678
IE +I RER R NP I+ HFEE+M++ARRSVSD DIRKY+ FAQTL
Sbjct: 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300
Query: 679 Q 679
Q
Sbjct: 301 Q 301
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 155/230 (67%), Gaps = 3/230 (1%)
Query: 108 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK 167
RE + +V ++D+GG+ +++ELV+ P+ HP F G+ P KG+L YGPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 168 TLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 227
TL+A+A+ANE A F I GPE+++ GESE+N+R+ F++A + AP ++F DE+DSIA
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 228 KREKTHGEVER---RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREID 284
R G+ R+++Q+LT MDG+ ++ +V +IGATNRP+ IDPA+ R GR D+ I
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 182
Query: 285 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEA 334
I +PDE R+ +L+ + + ++ DVDLE +AK T+G+ GADL +C A
Sbjct: 183 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/237 (56%), Positives = 178/237 (75%), Gaps = 3/237 (1%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V Y+D+GG+ KQM +IRE+VELPL+HP+LF+ +G++PPKGILLYGPPG+GKTL+A+AVA
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK--THG 234
ET A F + G E++ K GE S ++ F+ A++ APSIIFIDEID+IA KR T G
Sbjct: 74 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG 133
Query: 235 EVE-RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGR 293
+ E +R + QLL MDG +R V +IGATNRP+ +DPA+ R GRFDR I++ PDE GR
Sbjct: 134 DREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR 193
Query: 294 LEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
LE+L+IHT+ M L++DV+LE IAK T G VGA+L A+CTEA + IRE D + ++D
Sbjct: 194 LEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD 250
Score = 242 bits (617), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 157/234 (67%)
Query: 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 443
V E PNV +EDIGGLE +E++E V+ P++HPE FEK G+ P KG+L YGPPG GKTLL
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 444 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXX 503
AKA+A E A FI V G EL+ + GE + V++IF A++ AP ++F DE+D+IA +
Sbjct: 68 AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRT 127
Query: 504 XXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 563
L QLL EMDG A+ V IIGATNRPDI+DPA+LRPGR D++I +P
Sbjct: 128 DALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187
Query: 564 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
PDE+ RL+I K RK +++DV+L +AK T+G GA++ IC A AIRE
Sbjct: 188 PDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 245 bits (625), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 129/288 (44%), Positives = 177/288 (61%), Gaps = 22/288 (7%)
Query: 385 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLA 444
+ VPNV W DIG LE+++ EL + PV +P++F+ G+ GVL GPPGCGKTLLA
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61
Query: 445 KAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXX 504
KA+ANE NFISVKGPELL M+ GESE VR++F +A+ SAPCV+FFDE+D++ +
Sbjct: 62 KAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR--- 118
Query: 505 XXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 564
+NQLLTEMDG+ A++ VFI+ ATNRPDIIDPA+LRPGRLD+ +++ LP
Sbjct: 119 RSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLP 178
Query: 565 DEESRLQIFKACLR---KSPVSKDVDLRALAK--YTQGFSGADITEICQRACKYAIRENI 619
RL I K + K P+ DV+L A+A ++GAD++ + + A A+R+
Sbjct: 179 PPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ-- 236
Query: 620 EKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDAD 667
E R++S N + HFEE+ K R S+S D
Sbjct: 237 ----EMARQKSGN--------EKGELKVSHKHFEEAFKKVRSSISKKD 272
Score = 199 bits (506), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 150/232 (64%), Gaps = 5/232 (2%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V + D+G + ++ + P+R+P FK++G+ P G+LL GPPG GKTL+A+AVAN
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 236
E+G F + GPE+++ GESE +R+ F+ A+ +AP +IF DE+D++ P+R
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126
Query: 237 ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEV 296
R+V+QLLT MDGL++R V ++ ATNRP+ IDPA+ R GR D+ + +G+P RL +
Sbjct: 127 SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186
Query: 297 LRIHTKNMK---LSDDVDLERIAKDTH--GYVGADLAALCTEAALQCIREKM 343
L+ TKN L DV+LE IA D Y GADL+AL EA++ +R++M
Sbjct: 187 LKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238
>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
Length = 193
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 98/130 (75%), Positives = 117/130 (90%), Gaps = 1/130 (0%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 64 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 123
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGY 119
RP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE L+EVGY
Sbjct: 124 RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGY 183
Query: 120 DDVGGVRKQM 129
DDVGG RKQ+
Sbjct: 184 DDVGGCRKQL 193
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 162/236 (68%), Gaps = 5/236 (2%)
Query: 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 178
YD VGG+ KQ+ +I+E++ELP++HP+LF+S+G+ PKG++LYGPPG+GKTL+ARAVA+ T
Sbjct: 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206
Query: 179 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---- 234
F ++G E++ K GE +R+ F A ++APSIIF+DEIDSI R + G
Sbjct: 207 DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDS 266
Query: 235 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 294
EV+R ++ +LL +DG ++ ++ +I ATNR + +DPAL R GR DR+I+ P R
Sbjct: 267 EVQRTML-ELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARA 325
Query: 295 EVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
E+LRIH++ M L+ ++L ++A+ +G GAD+ +CTEA + +RE+ + ED
Sbjct: 326 EILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQED 381
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 144/234 (61%)
Query: 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 443
V +VP+ ++ +GGL +E++E ++ PV+HPE FE G++ KGV+ YGPPG GKTLL
Sbjct: 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198
Query: 444 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXX 503
A+A+A+ FI V G EL+ + GE VRE+F AR+ AP ++F DE+DSI +
Sbjct: 199 ARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV 258
Query: 504 XXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 563
+ +LL ++DG K + II ATNR DI+DPALLRPGR+D+ I P
Sbjct: 259 EGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318
Query: 564 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
P +R +I + RK +++ ++LR +A+ G SGAD+ +C A YA+RE
Sbjct: 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 3/235 (1%)
Query: 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 178
Y D+GG+ Q+ +I+E VELPL HP+L++ +G+KPPKG++LYG PG+GKTL+A+AVAN+T
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 179 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 238
A F I G E++ K G+ R+ F+ A +NAPSI+FIDEID+I KR ++ ER
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 239 ---RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 295
R + +LL +DG R V VI ATN+ ++DPAL R GR DR+I PD + +
Sbjct: 301 EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKK 360
Query: 296 VLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
+L IHT M LS+DV+LE + GAD+ A+CTEA L +RE+ + ED
Sbjct: 361 ILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAED 415
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 138/230 (60%)
Query: 388 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI 447
P ++ DIGGLE+ +E++E+V+ P+ HPE +E+ G+ P KGV+ YG PG GKTLLAKA+
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 448 ANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXX 507
AN+ A F+ + G EL+ + G+ R+IF A ++AP ++F DE+D+I T+
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 508 XXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEE 567
+ +LL ++DG + V +I ATN+ + +DPAL+RPGR+D+ I PD
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 568 SRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
++ +I K +S+DV+L L SGADI +C A A+RE
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/125 (74%), Positives = 112/125 (89%), Gaps = 1/125 (0%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 87 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 146
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGY 119
RP+RKGD+FLVRGGMR+VEF V+ETDP YC+VAPDT I CEGEP++REDE L+EVGY
Sbjct: 147 RPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGY 206
Query: 120 DDVGG 124
DD+GG
Sbjct: 207 DDIGG 211
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 161/238 (67%), Gaps = 3/238 (1%)
Query: 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 175
E+ +D +GG+ +Q+ ++RE++ELPL++P++F+ +G+KPPKG+LLYGPPG+GKTL+A+AVA
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 176 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTH 233
GA F I+ K GES +R+ F A+++ P IIF+DE+D+I +R E T
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 234 GEVE-RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292
+ E +R + +LLT MDG + +I ATNRP+++DPAL R GR DR+++I +P+E G
Sbjct: 297 ADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
Query: 293 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
RLE+ +IHT +K + + D E K + G+ GAD+ TEA IR+ D I+ +D
Sbjct: 357 RLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDD 414
Score = 201 bits (512), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 144/244 (59%)
Query: 375 SNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYG 434
++P T E + ++ IGGL REL+E ++ P+++PE F++ G+ P KGVL YG
Sbjct: 163 TDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYG 222
Query: 435 PPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 494
PPG GKTLLAKA+A ANFI ++ + GES +RE+F A++ PC++F DE
Sbjct: 223 PPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDE 282
Query: 495 LDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGR 554
+D+I + L +LLT+MDG II ATNRPD +DPALLRPGR
Sbjct: 283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGR 342
Query: 555 LDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 614
LD+ + IPLP+E RL+IFK K + + D A K + GF+GADI A +A
Sbjct: 343 LDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFA 402
Query: 615 IREN 618
IR++
Sbjct: 403 IRDD 406
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 204 bits (520), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 158/244 (64%), Gaps = 8/244 (3%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V + DVGG + + +++E+VE L+ P F IG + PKGILL GPPG+GKTL+ARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---- 232
E FF I+G + + G + +R F +A+ +AP I+FIDEID++ R
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 233 HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292
H E E+ + +QLL MDG S+ +IV+ ATNRP+ +DPAL R GRFD++I + PD +G
Sbjct: 132 HDEREQTL-NQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 293 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED-- 350
R ++L IHT+N L++DV+LE IAK T G+VGADL L EAAL RE D I ++D
Sbjct: 191 RKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFE 250
Query: 351 ETID 354
E ID
Sbjct: 251 EAID 254
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 138/232 (59%), Gaps = 1/232 (0%)
Query: 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 449
V ++D+GG E EL+E V++ ++ P KF + G KG+L GPPG GKTLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 450 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 509
E F + G + + ++ G A VR++F +A+ APC++F DE+D++
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 510 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 569
LNQLL EMDG +K+ + ++ ATNRPDI+DPALLRPGR D+ I + PD R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 570 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 621
+I + R P+++DV+L +AK T GF GAD+ + A A RE +K
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 140/228 (61%), Gaps = 1/228 (0%)
Query: 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 450
+ D+ G + K E+ E V+Y + P +F+K G KGVL GPPG GKTLLAKAIA E
Sbjct: 10 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 451 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXXX 510
+ F ++ G + + M+ G + VR++F++A+++APC++F DE+D++ Q
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 128
Query: 511 XXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRL 570
LNQ+L EMDG + + +I ATNRPD++DPALLRPGR D+ + + LPD R
Sbjct: 129 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 188
Query: 571 QIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 618
QI K +R+ P++ D+D +A+ T GFSGAD+ + A +A R N
Sbjct: 189 QILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 147/233 (63%), Gaps = 4/233 (1%)
Query: 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 178
+ DV G + ++ ELVE LR P F+ +G K PKG+L+ GPPG+GKTL+A+A+A E
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 179 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---E 235
FF I+G + + G S +R FE+A+K AP IIFIDEID++ +R G +
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 236 VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 295
+ ++Q+L MDG + +IVI ATNRP+ +DPAL R GRFDR++ +G+PD GR +
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 296 VLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 348
+L++H + + L+ D+D IA+ T G+ GADLA L EAAL R V+ +
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 152/238 (63%), Gaps = 3/238 (1%)
Query: 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 175
+V Y DVGG + Q+ ++RE+VELPL P+ F ++G+ PPKGILLYGPPG+GKTL ARAVA
Sbjct: 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264
Query: 176 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTH 233
N T A F + G E++ K GE +R+ FE A IIF DEID++ R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 234 GEVE-RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292
G+ E +R + +L+T +DG R ++ V+ ATNRPN++DPAL R GR DR+++ +PD G
Sbjct: 325 GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384
Query: 293 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
R + RIH+K+M + + E I++ GA+L ++CTEA + IR + V +D
Sbjct: 385 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKD 442
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 140/241 (58%)
Query: 376 NPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 435
+PS TV E P+V + D+GG ++ +L+E V+ P+ PE+F G+ P KG+L YGP
Sbjct: 192 DPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGP 251
Query: 436 PGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 495
PG GKTL A+A+AN A FI V G EL+ + GE VRE+F+ AR C++FFDE+
Sbjct: 252 PGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEI 311
Query: 496 DSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRL 555
D++ + +L+T++DG + + ++ ATNRP+ +DPALLRPGR+
Sbjct: 312 DAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRI 371
Query: 556 DQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 615
D+ + LPD E R IF+ + V + + +++ +GA++ +C A +AI
Sbjct: 372 DRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAI 431
Query: 616 R 616
R
Sbjct: 432 R 432
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 157/244 (64%), Gaps = 8/244 (3%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V + DVGG + + +++E+VE L+ P F IG + PKGILL GPPG+G TL+ARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---- 232
E FF I+G + + G + +R F +A+ +AP I+FIDEID++ R
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 233 HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292
H E E+ + +QLL MDG S+ +IV+ ATNRP+ +DPAL R GRFD++I + PD +G
Sbjct: 132 HDEREQTL-NQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 293 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED-- 350
R ++L IHT+N L++DV+LE IAK T G+VGADL L EAAL RE D I ++D
Sbjct: 191 RKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFE 250
Query: 351 ETID 354
E ID
Sbjct: 251 EAID 254
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 137/232 (59%), Gaps = 1/232 (0%)
Query: 390 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 449
V ++D+GG E EL+E V++ ++ P KF + G KG+L GPPG G TLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 450 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 509
E F + G + + ++ G A VR++F +A+ APC++F DE+D++
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 510 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 569
LNQLL EMDG +K+ + ++ ATNRPDI+DPALLRPGR D+ I + PD R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 570 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 621
+I + R P+++DV+L +AK T GF GAD+ + A A RE +K
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243
>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
Motif Of Ubx Domain Suffering Conformational Change
Length = 178
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 102/111 (91%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 66 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 125
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDE 111
RP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE
Sbjct: 126 RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDE 176
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 160/286 (55%), Gaps = 15/286 (5%)
Query: 352 TIDAEILN-SMAVTDEHFKTAL-------GTSNPSALRETVVEVPNVNWEDIGGLENVKR 403
T+D E+L SM+V AL S+ S + E E P+V + D+GGL+ K+
Sbjct: 125 TLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGEN--EKPDVTYADVGGLDMQKQ 182
Query: 404 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 463
E++E V+ P+ + +E+ G+ P +GVL YGPPG GKT+L KA+AN +A FI V G E
Sbjct: 183 EIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242
Query: 464 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTE 523
+ + GE VR++F AR++AP ++F DE+DSIAT+ L +LLT+
Sbjct: 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ 302
Query: 524 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP-LPDEESRLQIFKACLRKSPV 582
MDG V +I ATNR D +DPALLRPGRLD+ I P L D R IF K +
Sbjct: 303 MDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL 362
Query: 583 SKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIE 624
+ + DL +L SGA I I Q A A+R+N ++ D+E
Sbjct: 363 APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 408
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 148/247 (59%), Gaps = 7/247 (2%)
Query: 111 ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLI 170
EN +V Y DVGG+ Q +IRE VELPL L++ IG+ PP+G+LLYGPPG+GKT++
Sbjct: 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTML 222
Query: 171 ARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 230
+AVAN T A F +NG E + K GE +R F A +NAPSIIFIDE+DSIA KR
Sbjct: 223 VKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRF 282
Query: 231 KTHGEVER---RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI-G 286
+R RI+ +LLT MDG +V VI ATNR +++DPAL R GR DR+I+
Sbjct: 283 DAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPS 342
Query: 287 VPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVI 346
+ D R + M L+ + DL+ + GA +AA+ EA L+ +R+ VI
Sbjct: 343 LRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVI 402
Query: 347 ---DLED 350
DLE+
Sbjct: 403 LQSDLEE 409
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 146/235 (62%), Gaps = 3/235 (1%)
Query: 119 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 178
Y DVGG+ KQ+ ++ E + LP++ FK +G++ PKG L+YGPPG+GKTL+ARA A +T
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 179 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR---EKTHGE 235
A F + P+++ GE +R AF A++ AP+IIFIDE+D+I KR EK+
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 236 VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 295
+R + +LL +DG S V V+ ATNR + +DPAL R GR DR+I+ +P E R +
Sbjct: 300 EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQ 359
Query: 296 VLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
+L+IH++ M DD++ + +A+ T + GA L A+ EA + +R + ED
Sbjct: 360 ILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHED 414
Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 135/233 (57%)
Query: 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 443
V E P + D+GGL+ EL E + P++ +KF+ G+ KG L YGPPG GKTLL
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLL 231
Query: 444 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXX 503
A+A A + A F+ + P+L+ M+ GE VR+ F A++ AP ++F DELD+I T+
Sbjct: 232 ARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRF 291
Query: 504 XXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 563
+ +LL ++DG S+ V ++ ATNR D++DPALLR GRLD+ I PL
Sbjct: 292 DSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL 351
Query: 564 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 616
P E+SR QI + RK D++ + LA+ T F+GA + + A A+R
Sbjct: 352 PSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 147/229 (64%), Gaps = 6/229 (2%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V + D+ G + ++ E+V+ L++P+ + ++G K PKG+LL GPPG+GKTL+A+AVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK---TH 233
E FF + G + G S +R FE A+K APSIIFIDEID+I R
Sbjct: 67 EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126
Query: 234 GEVER-RIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEV 291
G ER + ++QLL MDG S A VIV+ ATNRP +DPAL R GRFDR++ + PD
Sbjct: 127 GNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186
Query: 292 GRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIR 340
GR+E+L++H K +KL++DV+L+ +AK T G GADLA + EAAL R
Sbjct: 187 GRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 147/246 (59%), Gaps = 4/246 (1%)
Query: 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 445
E PNV ++D+ G E K E+ E V + +++PE++ G KGVL GPPG GKTLLAK
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 446 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA-TQXXX 504
A+A E F S+ G + M+ G + VR++F+ A++ AP ++F DE+D+I ++
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 505 XXXXXXXXXXXXLNQLLTEMDGMSAKKT-VFIIGATNRPDIIDPALLRPGRLDQLIYIPL 563
LNQLL EMDG ++ V ++ ATNRP+I+DPAL+RPGR D+ + +
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 564 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 623
PD R++I K ++ ++ DV+L+ +AK T G +GAD+ I A A R N +K++
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN-QKEV 241
Query: 624 ERERRR 629
++ +
Sbjct: 242 RQQHLK 247
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 144/248 (58%), Gaps = 12/248 (4%)
Query: 389 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA 448
V+++D+ G+ K E++E V Y ++ PE+F + G KG L GPPGCGKTLLAKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 449 NECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXX 508
E Q F+++ G E + + G A VR +F +AR APC+++ DE+D++ +
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 509 -XXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEE 567
LNQLL EMDGM V ++ +TNR DI+D AL+RPGRLD+ ++I LP +
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 568 SRLQIFKACLRKSPVSKDVDLRA--LAKYTQGFSGADITEICQRACKYAIRE-------- 617
R +IF+ L+ +++ + LA+ T GFSGADI IC A +A RE
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240
Query: 618 NIEKDIER 625
N E +ER
Sbjct: 241 NFEYAVER 248
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 136/231 (58%), Gaps = 7/231 (3%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V + DV G+ + ++RE V+ L+ P+ F +G K PKG LL GPPG GKTL+A+AVA
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 236
E F + G E + + G + +R F+EA AP I++IDEID++ KR T
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 237 ----ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292
E + ++QLL MDG+ + HVIV+ +TNR + +D AL R GR DR + I +P
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 293 RLEVLRIHTKNMKLSDDVDL--ERIAKDTHGYVGADLAALCTEAALQCIRE 341
R E+ H K++KL+ +R+A+ T G+ GAD+A +C EAAL RE
Sbjct: 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
Length = 187
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 80/104 (76%), Positives = 95/104 (91%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 143
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGE 104
RP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGE
Sbjct: 144 RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGE 187
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 80/104 (76%), Positives = 95/104 (91%)
Query: 1 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAY 60
MN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAY
Sbjct: 83 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAY 142
Query: 61 RPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGE 104
RP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGE
Sbjct: 143 RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGE 186
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 143/242 (59%), Gaps = 1/242 (0%)
Query: 380 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 439
L + E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG G
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVG 61
Query: 440 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 499
KT LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 500 TQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 559
+ LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 181
Query: 560 YIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 619
I PD + R QI + R P+++DVDL LAK T GF GAD+ + A A RE
Sbjct: 182 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 241
Query: 620 EK 621
K
Sbjct: 242 RK 243
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 175
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 12 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 70
Query: 176 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG- 234
E F +G + + G + +R FE A+++AP I+FIDEID++ KR G
Sbjct: 71 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 130
Query: 235 --EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292
+ + ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 131 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190
Query: 293 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
R ++LRIH + L++DVDL +AK T G+VGADL L EAAL RE I ++D
Sbjct: 191 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 248
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 142/239 (59%), Gaps = 1/239 (0%)
Query: 383 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTL 442
+ E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 443 LAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 502
LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 503 XXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 562
LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 563 LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 621
PD + R QI + R P+++DVDL LAK T GF GAD+ + A A RE K
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 267
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 148/238 (62%), Gaps = 4/238 (1%)
Query: 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 175
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94
Query: 176 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--H 233
E F +G + + G + +R FE A+++AP I+FIDEID++ KR
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154
Query: 234 GEVER-RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292
G ER + ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 293 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
R ++LRIH + L++DVDL +AK T G+VGADL L EAAL RE I ++D
Sbjct: 215 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 1/220 (0%)
Query: 383 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTL 442
+ E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 79
Query: 443 LAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 502
LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
Query: 503 XXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 562
LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I I
Sbjct: 140 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199
Query: 563 LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGAD 602
PD + R QI + R P+++DVDL LAK T GF GAD
Sbjct: 200 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 175
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 27 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 85
Query: 176 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG- 234
E F +G + + G + +R FE A+++AP I+FIDEID++ KR G
Sbjct: 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 145
Query: 235 --EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292
+ + ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 146 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205
Query: 293 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE---KMDVIDLE 349
R ++LRIH + L++DVDL +AK T G+VGADL L EAAL RE K+ + DLE
Sbjct: 206 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265
Query: 350 D 350
+
Sbjct: 266 E 266
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 142/239 (59%), Gaps = 1/239 (0%)
Query: 383 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTL 442
+ E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 443 LAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 502
LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 503 XXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 562
LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 563 LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 621
PD + R QI + R P+++DVDL LAK T GF GAD+ + A A RE K
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 267
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 175
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94
Query: 176 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG- 234
E F +G + + G + +R FE A+++AP I+FIDEID++ KR G
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154
Query: 235 --EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292
+ + ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 293 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE---KMDVIDLE 349
R ++LRIH + L++DVDL +AK T G+VGADL L EAAL RE K+ + DLE
Sbjct: 215 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 274
Query: 350 D 350
+
Sbjct: 275 E 275
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 171/332 (51%), Gaps = 21/332 (6%)
Query: 55 YFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEP-----VRRE 109
YF P+ K D GGM+ + T+P P E EP + E
Sbjct: 19 YFQSMVPPIPKQDGGEQNGGMQCKPYGAGPTEP-----AHPVDERLKNLEPKMIELIMNE 73
Query: 110 DENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTL 169
+ V ++D+ GV A I+E+V P+ P +F + PPKGILL+GPPG+GKTL
Sbjct: 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTL 132
Query: 170 IARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 229
I + +A+++GA FF I+ + SK GE E +R F A P++IFIDEIDS+ +R
Sbjct: 133 IGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR 192
Query: 230 EKTHGEVERRIVSQLLTLMDG--LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 287
E RRI ++ L +DG S ++V+GATNRP ID A RR R + + I +
Sbjct: 193 GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPL 250
Query: 288 PDEVGRLE-VLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVI 346
P+ R + V+ + +K + ++E+I + + + GAD+ LC EA+L IR +
Sbjct: 251 PEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR-SLQTA 309
Query: 347 DLEDETIDAEILNSMAVTDEHFKTALGTSNPS 378
D+ TI + + +A D F+ A T PS
Sbjct: 310 DI--ATITPDQVRPIAYID--FENAFRTVRPS 337
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 150/302 (49%), Gaps = 22/302 (7%)
Query: 380 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 439
+ E + P VNWEDI G+E K ++E V +P+ P+ F P KG+L +GPPG G
Sbjct: 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTG 129
Query: 440 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 499
KTL+ K IA++ A F S+ L + W GE E VR +F AR P V+F DE+DS+
Sbjct: 130 KTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLL 189
Query: 500 TQXXXXXXXXXXXXXXXLNQLLTEMDG--MSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 557
+Q + L ++DG S++ + ++GATNRP ID A R RL +
Sbjct: 190 SQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVK 244
Query: 558 LIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIR 616
+YIPLP+ +R QI + K + ++ + + + FSGAD+T++C+ A IR
Sbjct: 245 RLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
Query: 617 ENIEKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQAFAQ 676
DI P I + FE + + R SVS D+ Y+ + +
Sbjct: 305 SLQTADIATITPDQVRP-------------IAYIDFENAFRTVRPSVSPKDLELYENWNK 351
Query: 677 TL 678
T
Sbjct: 352 TF 353
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 137/239 (57%), Gaps = 8/239 (3%)
Query: 381 RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGK 440
R ++ E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGK 73
Query: 441 TLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 500
+ LAKA+A E + F SV +L++ W GESE V+++F AR++ P ++F DE+D++
Sbjct: 74 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTG 133
Query: 501 QXXXXXXXXXXXXXXXLNQLLTEMDGM-SAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 559
+LL +M+G+ + + V ++GATN P +D A+ R R ++ I
Sbjct: 134 TRGEGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRI 188
Query: 560 YIPLPDEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
YIPLPD +R +F+ + +P V D R L T+G+SG+DI + + A IR+
Sbjct: 189 YIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 82
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 236
E + FF ++ +++SK GESE +++ F A +N PSIIFIDE+D++ R + E
Sbjct: 83 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEA 142
Query: 237 ERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 295
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 143 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 200
Query: 296 VLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
+ I+ + + D + T GY G+D+A + +A +Q IR+ +D
Sbjct: 201 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 256
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 8/234 (3%)
Query: 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 445
E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 102
Query: 446 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXX 505
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++
Sbjct: 103 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 162
Query: 506 XXXXXXXXXXXLNQLLTEMDGM-SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 564
+LL +M+G+ + + V ++GATN P +D A+ R R ++ IYIPLP
Sbjct: 163 ESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 217
Query: 565 DEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
D +R +F+ + +P V D R L T+G+SG+DI + + A IR+
Sbjct: 218 DLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 106
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 236
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 107 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 166
Query: 237 ERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 295
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 167 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 224
Query: 296 VLRIHTKNM-KLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
+ I+ + + D + T GY G+D+A + +A +Q IR+ +D
Sbjct: 225 MFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 280
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 8/234 (3%)
Query: 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 445
E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 29 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 87
Query: 446 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXX 505
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++
Sbjct: 88 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 147
Query: 506 XXXXXXXXXXXLNQLLTEMDGM-SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 564
+LL +M+G+ + + V ++GATN P +D A+ R R ++ IYIPLP
Sbjct: 148 ESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 202
Query: 565 DEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
D +R +F+ + +P V D R L T+G+SG+DI + + A IR+
Sbjct: 203 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 91
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 236
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 92 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 151
Query: 237 ERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 295
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 152 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 209
Query: 296 VLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
+ I+ + + D + T GY G+D+A + +A +Q IR+ +D
Sbjct: 210 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 265
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 73
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 236
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 74 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 133
Query: 237 ERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 295
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 134 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 191
Query: 296 VLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 350
+ I+ + + D + T GY G+D+A + +A +Q IR+ +D
Sbjct: 192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 247
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 8/234 (3%)
Query: 386 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 445
E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 69
Query: 446 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXX 505
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 129
Query: 506 XXXXXXXXXXXLNQLLTEMDGM-SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 564
+LL +M+G+ + + V ++GATN P +D A+ R R ++ IYIPLP
Sbjct: 130 ESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 184
Query: 565 DEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
D +R +F+ + +P V D R L T+G+SG+DI + + A IR+
Sbjct: 185 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 132/237 (55%), Gaps = 9/237 (3%)
Query: 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 443
V+E PNV W D+ GLE K L+E V P++ P F +P +G+L +GPPG GK+ L
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 61
Query: 444 AKAIANECQ-ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 502
AKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+DS+
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 503 XXXXXXXXXXXXXXLNQLLTEMDGMSAKKT-VFIIGATNRPDIIDPALLRPGRLDQLIYI 561
+ L +M G+ + ++GATN P ++D A+ R R ++ IYI
Sbjct: 122 SENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 176
Query: 562 PLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
PLP+ +R +FK L + S + D R L + T G+SGADI+ I + A +R+
Sbjct: 177 PLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 164/311 (52%), Gaps = 10/311 (3%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V + DV G+ ++E V LP++ P LF P +GILL+GPPG+GK+ +A+AVA
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVAT 67
Query: 177 E-TGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE 235
E + FF I+ +++SK GESE ++ F+ A +N PSIIFIDEIDS+ R + E
Sbjct: 68 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 127
Query: 236 VERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 294
RRI ++ L M G+ ++V+GATN P +D A+RR RF++ I I +P+ R
Sbjct: 128 AARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARA 185
Query: 295 EVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETI 353
+ ++H + S + D + + T GY GAD++ + +A +Q +R+ +
Sbjct: 186 AMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRG 245
Query: 354 DAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVN-WEDIGGLENVKRELQETVQYP 412
+ + V D T +P A+ T ++VP E + + ++ R L T
Sbjct: 246 PSRADPNHLVDD--LLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTV 303
Query: 413 VEHP-EKFEKF 422
EH K +KF
Sbjct: 304 NEHDLLKLKKF 314
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 137/228 (60%), Gaps = 6/228 (2%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V + DV G+ ++E V LP++ P LF P +GILL+GPPG+GK+ +A+AVA
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLAKAVAT 189
Query: 177 E-TGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE 235
E + FF I+ +++SK GESE ++ F+ A +N PSIIFIDEIDS+ R + E
Sbjct: 190 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 249
Query: 236 VERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 294
RRI ++ L M G+ ++V+GATN P +D A+RR RF++ I I +P+ R
Sbjct: 250 AARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARA 307
Query: 295 EVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 341
+ R+H + + S + D + + + T GY GAD++ + +A +Q +R+
Sbjct: 308 AMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 132/237 (55%), Gaps = 9/237 (3%)
Query: 384 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 443
V+E PNV W D+ GLE K L+E V P++ P F +P +G+L +GPPG GK+ L
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 183
Query: 444 AKAIANECQ-ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 502
AKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+DS+
Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 243
Query: 503 XXXXXXXXXXXXXXLNQLLTEMDGMSAKKT-VFIIGATNRPDIIDPALLRPGRLDQLIYI 561
+ L +M G+ + ++GATN P ++D A+ R R ++ IYI
Sbjct: 244 SENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 298
Query: 562 PLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
PLP+ +R +F+ L + S + D + L + T G+SGADI+ I + A +R+
Sbjct: 299 PLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 155/307 (50%), Gaps = 35/307 (11%)
Query: 380 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 439
L E V V W DI G + K+ LQE V P PE F +P+KG+L +GPPG G
Sbjct: 8 LDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNG 66
Query: 440 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 499
KTLLA+A+A EC A F+++ L + + G+ E VR +F AR P ++F DE+DS+
Sbjct: 67 KTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLL 126
Query: 500 TQXXXXXXXXXXXXXXXLNQLLTEMDGMSAK---KTVFIIGATNRPDIIDPALLRPGRLD 556
++ + L E DG+ + ++ ATNRP +D A LR R
Sbjct: 127 SERSSSEHEASRRLK---TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 181
Query: 557 QLIYIPLPDEESRLQIFKACLRK--SPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 614
+ +Y+ LPDE++R + L+K SP+ + LR LAK T G+SG+D+T + + A
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAALEP 240
Query: 615 IRE-NIEK----DIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDADIR 669
IRE N+E+ DI R +E F S+K RRSV+ +
Sbjct: 241 IRELNVEQVKCLDISAMRAITEQ------------------DFHSSLKRIRRSVAPQSLN 282
Query: 670 KYQAFAQ 676
Y+ ++Q
Sbjct: 283 SYEKWSQ 289
Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 147/262 (56%), Gaps = 14/262 (5%)
Query: 116 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 175
+V + D+ G ++E+V LP P+LF + P KG+LL+GPPG+GKTL+ARAVA
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVA 75
Query: 176 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE 235
E A F I+ + SK G+ E +R F A PSIIFIDE+DS+ +R + E
Sbjct: 76 TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135
Query: 236 VERRIVSQLLTLMDGLKSRA---HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 292
RR+ ++ L DGL ++V+ ATNRP +D A R RF + + + +PDE
Sbjct: 136 ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQT 193
Query: 293 RLEVL-RIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 351
R +L R+ K D L R+AK T GY G+DL AL +AAL+ IRE L E
Sbjct: 194 RELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE------LNVE 247
Query: 352 TIDAEILNSM-AVTDEHFKTAL 372
+ +++M A+T++ F ++L
Sbjct: 248 QVKCLDISAMRAITEQDFHSSL 269
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 137/228 (60%), Gaps = 6/228 (2%)
Query: 117 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 176
V +DD+ G ++E+V LP P+LF + P +G+LL+GPPG+GKT++A+AVA
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAA 170
Query: 177 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 236
E+ A FF I+ + SK GE E +R F A + PSIIFID++DS+ +R + +
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 237 ERRIVSQLLTLMDGLKSRA--HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 294
RR+ ++ L DG++S V+V+GATNRP +D A+ R RF + + + +P+E RL
Sbjct: 231 SRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288
Query: 295 EVLRIHT-KNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 341
+L+ K +L ++A+ T GY G+DL AL +AAL IRE
Sbjct: 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 148/296 (50%), Gaps = 24/296 (8%)
Query: 380 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 439
+ E V V ++DI G + K+ LQE V P PE F +P++G+L +GPPG G
Sbjct: 102 MNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNG 160
Query: 440 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 499
KT+LAKA+A E A F ++ L + + GE E VR +F AR+ P ++F D++DS+
Sbjct: 161 KTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLL 220
Query: 500 TQXXXXXXXXXXXXXXXLNQLLTEMDGM--SAKKTVFIIGATNRPDIIDPALLRPGRLDQ 557
+ + L E DG+ + V ++GATNRP +D A+LR R +
Sbjct: 221 CERREGEHDASRRLK---TEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIK 275
Query: 558 LIYIPLPDEESR--LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 615
+Y+ LP+EE+R L C + SP+++ +L LA+ T G+SG+D+T + + A I
Sbjct: 276 RVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPI 334
Query: 616 RENIEKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKY 671
RE P I+ F ES+K +RSVS + Y
Sbjct: 335 RE-------------LKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAY 377
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 152 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK 211
+P + +LL+GPPG GKT +A +A+E G +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 212 NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA------HVIVIGATNR 265
I+FIDEI ++ + E+ V ++ + G +R +IGAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 266 PNSID-PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 321
P I P L RFG + ++ P+E+ + + ++++++ LE I + + G
Sbjct: 148 PGLITAPLLSRFGIVE-HLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRRSRG 202
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 426 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 485
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 486 APCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTV-------FIIGA 538
+LF DE+ ++ Q + + A +T+ +IGA
Sbjct: 91 G-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-----IGQGPAARTIRLELPRFTLIGA 144
Query: 539 TNRPDIID-PALLRPGRLDQLIY 560
T RP +I P L R G ++ L Y
Sbjct: 145 TTRPGLITAPLLSRFGIVEHLEY 167
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 152 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK 211
+P + +LL+GPPG GKT +A +A+E G +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 212 NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA------HVIVIGATNR 265
I+FIDEI ++ + E+ V ++ + G +R +IGAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 266 PNSID-PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 321
P I P L RFG + ++ P+E+ + + ++++++ LE I + + G
Sbjct: 148 PGLITAPLLSRFGIVE-HLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRRSRG 202
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 426 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 485
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 486 APCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTV-------FIIGA 538
+LF DE+ ++ Q + + A +T+ +IGA
Sbjct: 91 G-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-----IGQGPAARTIRLELPRFTLIGA 144
Query: 539 TNRPDIID-PALLRPGRLDQLIY 560
T RP +I P L R G ++ L Y
Sbjct: 145 TTRPGLITAPLLSRFGIVEHLEY 167
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 152 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK 211
+P + +LL+GPPG GKT +A +A+E G +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--PGDLAAILANSLEEGD- 92
Query: 212 NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA------HVIVIGATNR 265
I+FIDEI ++ + E+ V ++ + G +R +IGAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 266 PNSID-PALRRFG 277
P I P L RFG
Sbjct: 148 PGLITAPLLSRFG 160
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 426 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 485
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 486 APCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTV-------FIIGA 538
+LF DE+ ++ Q + + A +T+ +IGA
Sbjct: 91 GD-ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-----IGQGPAARTIRLELPRFTLIGA 144
Query: 539 TNRPDIID-PALLRPGRLDQLIY 560
T RP +I P L R G ++ L Y
Sbjct: 145 TTRPGLITAPLLSRFGIVEHLEY 167
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 288 PDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVID 347
P+E RL++L+IH++ M L+ ++L +IA+ G GA++ +CTEA + +RE+ +
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 348 LED 350
ED
Sbjct: 71 QED 73
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 564 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
P+EE+RL I K RK +++ ++LR +A+ G SGA++ +C A YA+RE
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 32/158 (20%)
Query: 139 PLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI--MSKLAG 196
PLRH PK IL+ GP G GKT IAR +A A F + + + +
Sbjct: 43 PLRHEV--------TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 197 ESESNLRK-------AFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ-LLTLM 248
E +S +R A + E+N I+FIDEID I K E + +V R V + LL L+
Sbjct: 95 EVDSIIRDLTDSAGGAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152
Query: 249 D--------GLKSRAHVIVIGA----TNRPNSIDPALR 274
+ G+ H++ I + RP+ + P L+
Sbjct: 153 EGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQ 190
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 456
L N R +Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRMQ--LQEPLRHE-------VTP-KNILMIGPTGVGKTEIARRLAKLANAPFI 79
Query: 457 SVKGPELLTMWF--GESEANVREIFDKARQSAPCV-----LFFDELDSI 498
V+ + + + E ++ +R++ D A + V +F DE+D I
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 562 PLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
P P+EE+RL I K RK +++ ++LR +A+ G SGA++ +C A YA+RE
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRE 56
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 288 PDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVID 347
P+E RL++L+IH++ L+ ++L +IA+ G GA++ +CTEA +RE+ +
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVHVT 62
Query: 348 LED 350
ED
Sbjct: 63 QED 65
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 287 VPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVI 346
+PD GR + RIH+K+M + + E I++ GA+L ++CTEA + IR + V
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 66
Query: 347 DLED 350
+D
Sbjct: 67 TEKD 70
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 563 LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 616
LPD E R IF+ + V + + +++ +GA++ +C A +AIR
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 60
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 138 LPLRHPQLFKSIGVKPP-KGILLYGP-PGSGKTLIARAVANETGAFFFCINGPEIMSKLA 195
LP + FKSI K I+L+ P PG+GKT +A+A+ ++ A +NG +
Sbjct: 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
Query: 196 GESESNLRKA--FEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 253
+N A F+ +K +I IDE D + H L + M+ S
Sbjct: 90 RGPLTNFASAASFDGRQK----VIVIDEFDRSGLAESQRH----------LRSFMEAYSS 135
Query: 254 RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLR 298
+I+ N+ID ++ R I G P + ++E+++
Sbjct: 136 NCSIIITA-----NNIDGIIKPLQSRCRVITFGQPTDEDKIEMMK 175
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 29/167 (17%)
Query: 420 EKFGMSPSKG----VLFYGP-PGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 474
E F SKG ++ + P PG GKT +AKA+ ++ A+ + V G + + N
Sbjct: 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTN 95
Query: 475 VREI--FDKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKT 532
FD RQ V+ DE D L + M+ S+ +
Sbjct: 96 FASAASFD-GRQK---VIVIDEFDRSGLAESQ-------------RHLRSFMEAYSSNCS 138
Query: 533 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK 579
+ II A N II P R ++I P +E ++++ K +R+
Sbjct: 139 I-IITANNIDGIIKPLQSRC----RVITFGQPTDEDKIEMMKQMIRR 180
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESES----NLRKAFEE 208
P +LL GPP SGKT +A +A E+ F I P+ K+ G SE+ ++K F++
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 118
Query: 209 AEKNAPSIIFIDEIDSI 225
A K+ S + +D+I+ +
Sbjct: 119 AYKSQLSCVVVDDIERL 135
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 425 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE--ANVREIFDKA 482
+P VL GPP GKT LA IA E FI + P+ + + F E+ +++IFD A
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 119
Query: 483 RQSAPCVLFFDELDSI 498
+S + D+++ +
Sbjct: 120 YKSQLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 153 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESES----NLRKAFEE 208
P +LL GPP SGKT +A +A E+ F I P+ K+ G SE+ ++K F++
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 119
Query: 209 AEKNAPSIIFIDEIDSI 225
A K+ S + +D+I+ +
Sbjct: 120 AYKSQLSCVVVDDIERL 136
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 425 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA--NVREIFDKA 482
+P VL GPP GKT LA IA E FI + P+ + + F E+ +++IFD A
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 120
Query: 483 RQSAPCVLFFDELDSI 498
+S + D+++ +
Sbjct: 121 YKSQLSCVVVDDIERL 136
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 456
G ENVK++L ++ E + VL GPPG GKT LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNIH 80
Query: 457 SVKGPELL 464
GP L+
Sbjct: 81 VTSGPVLV 88
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 216
+LL GPPG GKT +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 217 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 264
+FIDEI + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 265 RPNSIDPALR-RFG 277
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 456
G ENVK++L ++ E + VL GPPG GKT LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNIH 80
Query: 457 SVKGPELL 464
GP L+
Sbjct: 81 VTSGPVLV 88
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 216
+LL GPPG GKT +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 217 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 264
+FIDEI + + VE + S + + +M G A I ++G+T
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGSTT 158
Query: 265 RPNSIDPALR-RFG 277
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 456
G ENVK++L ++ E + VL GPPG GKT LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNIH 80
Query: 457 SVKGPELL 464
GP L+
Sbjct: 81 VTSGPVLV 88
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 216
+LL GPPG GKT +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 217 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 264
+FIDEI + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 265 RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 321
R + LR E+D E+ E+++ M + +D E IAK + G
Sbjct: 159 RSGLLSSPLRSAFGIILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 456
G ENVK++L ++ E + VL GPPG GKT LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNIH 80
Query: 457 SVKGPELL 464
GP L+
Sbjct: 81 VTSGPVLV 88
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 216
+LL GPPG GKT +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 217 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 264
+FIDEI + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 265 RPNSIDPALR-RFG 277
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 450
+ ++ G ENVK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 451 CQANFISVKGPELL 464
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 216
+LL GPPG GKT +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 217 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 264
+FIDEI + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATV 158
Query: 265 RPNSIDPALR-RFG 277
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 456
G ENVK++L ++ E + VL GPPG G+T LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGRTTLAHIIASELQTNIH 80
Query: 457 SVKGPELL 464
GP L+
Sbjct: 81 VTSGPVLV 88
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 216
+LL GPPG G+T +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 217 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 264
+FIDEI + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 265 RPNSIDPALR-RFG 277
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 20/83 (24%)
Query: 157 ILLYGPPGSGKTLIARAVANE-------------TGAFFFCINGPEIMSKLAGESESNLR 203
ILL GP GSGKTL+A+ +A T A + + I+++L S+ N++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 204 KAFEEAEKNAPSIIFIDEIDSIA 226
KA I+FIDEID I+
Sbjct: 135 KA-------QKGIVFIDEIDKIS 150
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 430 VLFYGPPGCGKTLLAKAIANE-------------CQANFISVKGPELLTMWFGESEANVR 476
+L GP G GKTL+A+ +A +A ++ +LT S+ NV+
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 477 EIFDKARQSAPCVLFFDELDSIA 499
KA++ ++F DE+D I+
Sbjct: 135 ----KAQKG---IVFIDEIDKIS 150
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 431 LFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----------TMWFGESEANVREIF 479
+ G PG GKT +A+ +A + N + PE+L T + GE E ++++
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 480 DKARQSAPCVLFFD 493
D+ RQ+ +LF D
Sbjct: 261 DEIRQAGNIILFID 274
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 19/76 (25%)
Query: 158 LLYGPPGSGKTLIARAVANETGAFFFCING--PEIM-----------SKLAGESESNLRK 204
+L G PG GKT IA +A + IN PEI+ +K GE E L+K
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 205 AFEEAEKNAPSIIFID 220
+E + I+FID
Sbjct: 259 VMDEIRQAGNIILFID 274
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 431 LFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----------TMWFGESEANVREIF 479
+ G PG GKT +A+ +A + N + PE+L T + GE E ++++
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 480 DKARQSAPCVLFFD 493
D+ RQ+ +LF D
Sbjct: 261 DEIRQAGNIILFID 274
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 19/76 (25%)
Query: 158 LLYGPPGSGKTLIARAVANETGAFFFCING--PEIM-----------SKLAGESESNLRK 204
+L G PG GKT IA +A + IN PEI+ +K GE E L+K
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 205 AFEEAEKNAPSIIFID 220
+E + I+FID
Sbjct: 259 VMDEIRQAGNIILFID 274
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 128 QMAQIRELVELPLRHPQLFKSIGV---KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 184
Q+A++ + L R +L ++I V + LL G G GKT IA +A +
Sbjct: 178 QLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA------WRI 231
Query: 185 ING--PEIM----------------SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIA 226
+ G PE+M +K G+ E + ++ E++ SI+FIDEI +I
Sbjct: 232 VQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTII 291
Query: 227 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP--NSIDPALRRFGRFDREID 284
+ G+V+ L+ L S + VIG+T ++I R R ++ID
Sbjct: 292 GAGAASGGQVD------AANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKID 345
Query: 285 IGVP 288
I P
Sbjct: 346 ITEP 349
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 155 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKAF 206
+ +LL GPPG+GKT +A A+A E G+ FC + G E+ S ++E N R+A
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 428 KGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESE 472
+ VL GPPG GKT LA AIA E + F + G E+ + ++E
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-SKLAGESESN-----LRKAFEEAE 210
ILL GP GSGKTL+A +A F + + + GE N L+K + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 211 KNAPSIIFIDEIDSIAPKRE 230
K I++ID+ID I+ K +
Sbjct: 114 KAQRGIVYIDQIDKISRKSD 133
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 430 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEAN-VREIFDK----AR 483
+L GP G GKTLLA+ +A F L + GE N ++++ K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 484 QSAPCVLFFDELDSIA 499
++ +++ D++D I+
Sbjct: 114 KAQRGIVYIDQIDKIS 129
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-SKLAGESESN-----LRKAFEEAE 210
ILL GP GSGKTL+A +A F + + + GE N L+K + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 211 KNAPSIIFIDEIDSIAPKRE 230
K I++ID+ID I+ K +
Sbjct: 114 KAQRGIVYIDQIDKISRKSD 133
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 430 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEAN-VREIFDK----AR 483
+L GP G GKTLLA+ +A F L + GE N ++++ K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 484 QSAPCVLFFDELDSIA 499
++ +++ D++D I+
Sbjct: 114 KAQRGIVYIDQIDKIS 129
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 155 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKAFEEA 209
+ +LL GPPG+GKT +A A+A E G+ FC G E+ S ++E N R+A
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLR 137
Query: 210 EKNAPSIIFID 220
K P I D
Sbjct: 138 IKEGPPGIIQD 148
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 428 KGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESE 472
+ VL GPPG GKT LA AIA E + F G E+ + ++E
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE 124
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 451
GL+ VK ++ET + + +K G+ +P+ + F G PG GKT +A +A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93
Query: 452 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 494
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 138
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 154 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFCING-----PEIMSKLAGESESNL- 202
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 203 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLT 246
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 247 LMDG 250
M G
Sbjct: 179 KMTG 182
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 154 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFCING-----PEIMSKLAGESESNL- 202
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 203 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLT 246
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 247 LMDG 250
M G
Sbjct: 179 KMTG 182
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 154 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFCING-----PEIMSKLAGESESNL- 202
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 203 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLT 246
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 247 LMDG 250
M G
Sbjct: 179 KMTG 182
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 154 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFCING-----PEIMSKLAGESESNL- 202
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 203 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLT 246
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 247 LMDG 250
M G
Sbjct: 179 KMTG 182
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 451
GL+ VK ++ET + + +K G+ +P+ + F G PG GKT +A +A
Sbjct: 28 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 86
Query: 452 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 494
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 87 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 131
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 289 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 348
D GR + RIH+K+ + + E I++ GA+L ++CTEA IR + V
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATE 61
Query: 349 ED 350
+D
Sbjct: 62 KD 63
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 565 DEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IE 620
D + IF K +S++VDL SGADI ICQ + A+REN +
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 621 KDIER 625
KD E+
Sbjct: 62 KDFEK 66
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 301 TKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 341
T M LS++VDLE GAD+ ++C E+ + +RE
Sbjct: 14 TSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE 54
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 456
L N R +Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRMQ--LQEPLRHE-------VTP-KNILMIGPTGVGKTEIARRLAKLANAPFI 79
Query: 457 SVKGPELLTMWF--GESEANVREIFDKA 482
V+ + + + E ++ +R++ D A
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 139 PLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI--MSKLAG 196
PLRH PK IL+ GP G GKT IAR +A A F + + + +
Sbjct: 43 PLRHE--------VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 197 ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 245
E +S +R + A K + IA R + E RI+ LL
Sbjct: 95 EVDSIIRDLTDSAMK-------LVRQQEIAKNRARAEDVAEERILDALL 136
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 17/90 (18%)
Query: 203 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ-LLTLMD--------GLKS 253
+KA + E+N I+FIDEID I K E + +V R V + LL L++ G+
Sbjct: 242 QKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVK 299
Query: 254 RAHVIVIGA----TNRPNSIDPALRRFGRF 279
H++ I + RP+ + P L+ GR
Sbjct: 300 TDHILFIASGAFQVARPSDLIPELQ--GRL 327
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAP-- 214
++L+GPPG+GKT +A +A A + I + +G E +R+A E A +N
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANA-----DVERISAVTSGVKE--IREAIERARQNRNAG 105
Query: 215 --SIIFIDEI 222
+I+F+DE+
Sbjct: 106 RRTILFVDEV 115
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 430 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPC- 488
++ +GPPG GKT LA+ IA A+ + +T E +RE ++ARQ+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA---VTSGVKE----IREAIERARQNRNAG 105
Query: 489 ---VLFFDEL 495
+LF DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 451
GL+ VK ++ET + + +K G+ +P+ F G PG GKT +A A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHR 93
Query: 452 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 494
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---XGGVLFIDE 138
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 27/134 (20%)
Query: 154 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFCING-----PEIMSKLAGESESNL- 202
P+G I +YGP SGKT +A AVAN G I+ P+ KL +++S L
Sbjct: 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLV 117
Query: 203 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLT 246
+A E A+ A I+ ID + ++ P+ E +H ++ R++SQ L
Sbjct: 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALR 177
Query: 247 LMDGLKSRAHVIVI 260
M G + + I
Sbjct: 178 KMTGALNNSGTTAI 191
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 155 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK----------LAGESESNLRK 204
+ +LYGPPG GKT A VA E G N ++ SK L S K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 205 AFEEAE--KNAPSIIFIDEIDSIA 226
EEA+ +I +DE+D ++
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMS 161
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 428 KGVLFYGPPGCGKTLLAKAIANE 450
+ + YGPPG GKT A +A E
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQE 100
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 140 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA-RAVANETGAFFFCIN------GPEIMS 192
++H ++F + + +GI+L GPPGSGKT+I A+ N + IN I+S
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILS 1312
Query: 193 KLAGESES-NLRKAFEEAEKN--APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 249
L + K K+ ++F DEI+ PK +K + + QL+
Sbjct: 1313 ALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN--LPKLDKYGSQNVVLFLRQLMEKQG 1370
Query: 250 GLKS---------RAHVIVIGATNRPNSID--PALRRFGRFDREIDIGVPDEVGRLEVLR 298
K+ R H ++GA N P P RF R + +G P ++
Sbjct: 1371 FWKTPENKWVTIERIH--IVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYE 1428
Query: 299 IHTK 302
I+ K
Sbjct: 1429 IYYK 1432
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 140 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLI 170
++H ++F + + +GI+L GPPGSGKT+I
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 133 RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI-- 190
R ++ PLRH PK IL GP G GKT IAR +A A F + +
Sbjct: 37 RXQLQEPLRHE--------VTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
Query: 191 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 245
+ + E +S +R + A K + IA R + E RI+ LL
Sbjct: 89 VGYVGKEVDSIIRDLTDSAXK-------LVRQQEIAKNRARAEDVAEERILDALL 136
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 397 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 456
L N R Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRXQ--LQEPLRHE-------VTP-KNILXIGPTGVGKTEIARRLAKLANAPFI 79
Query: 457 SVKGPELLTMWF--GESEANVREIFDKA 482
V+ + + + E ++ +R++ D A
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 203 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ-LLTLMDG 250
+KA + E+N I+FIDEID I K E + +V R V + LL L++G
Sbjct: 242 QKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 288
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 155 KGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESESNLRKAFEEA--- 209
+ +L+ G PG+GKT IA +A G F I G EI S ++E+ L +AF +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA-LTQAFRRSIGV 129
Query: 210 --EKNAPSIIFIDEIDSIAPKRE 230
+ A + + EID I + +
Sbjct: 130 RIKAGAVHTVSLHEIDVINSRTQ 152
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 423 GMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANV----R 476
G + VL G PG GKT +A +A + F ++ G E+ ++ ++EA R
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125
Query: 477 EIFDKARQSAPCVLFFDELDSI 498
I + + A + E+D I
Sbjct: 126 SIGVRIKAGAVHTVSLHEIDVI 147
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 391 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 450
N++ G E++K+ L + + E + +LF GP G GKT LA I+ E
Sbjct: 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDH--------ILFSGPAGLGKTTLANIISYE 78
Query: 451 CQANFISVKGPEL 463
AN + P +
Sbjct: 79 XSANIKTTAAPXI 91
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 20/130 (15%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 216
IL GP G GKT +A ++ E A P I + +G+ + L E I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI--EKSGDLAAILTNLSE------GDI 109
Query: 217 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVI--------VIGATNRPNS 268
+FIDEI ++P E+ L ++ G A I +IGAT R
Sbjct: 110 LFIDEIHRLSPAIEEVLYPAXE---DYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGX 166
Query: 269 IDPALR-RFG 277
+ LR RFG
Sbjct: 167 LSNPLRDRFG 176
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 428 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 482
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCING 187
PK IL+ GP G GKT IAR +A A F +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 82
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 428 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 482
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCING 187
PK IL+ GP G GKT IAR +A A F +
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 89
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 428 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 482
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 154 PKGILLYGPPGSGKTLIARAVANETGAFFFCING 187
PK IL+ GP G GKT IAR +A A F +
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 70/187 (37%), Gaps = 50/187 (26%)
Query: 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-- 450
+DI G E++ + L+ V K G P +LF GPPG GKT A A+A E
Sbjct: 25 DDIVGQEHIVKRLKHYV-----------KTGSMPH--LLFAGPPGVGKTTAALALARELF 71
Query: 451 ---CQANFISVKGPELLTMWFGESEANV-REIFDKARQSAPC------VLFFDELDSIAT 500
+ NF+ + + E NV RE + ++ P ++F DE D++
Sbjct: 72 GENWRHNFLELNASD-------ERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124
Query: 501 QXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 560
Q L M + FI+ II+P R +
Sbjct: 125 DA---------------QQALRRTMEMFSSNVRFILSCNYSSKIIEPI---QSRCAIFRF 166
Query: 561 IPLPDEE 567
PL DE+
Sbjct: 167 RPLRDED 173
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESN---LRKAFEEAEKNA 213
+L GPPG GKT A A+A E F N +L E +R+ +E +
Sbjct: 49 LLFAGPPGVGKTTAALALARE----LFGENWRHNFLELNASDERGINVIREKVKEFARTK 104
Query: 214 P------SIIFIDEIDSI 225
P IIF+DE D++
Sbjct: 105 PIGGASFKIIFLDEADAL 122
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 131 QIRELVELPLRHPQLFKSI--GVKPPK-----GILLYGPPGSGKTLIARAVANETGAFFF 183
+I +++EL PQ S+ G K I L+GP +GKT IA A+A+ T F+
Sbjct: 74 RIYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH-TVPFYG 132
Query: 184 CIN 186
C+N
Sbjct: 133 CVN 135
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 131 QIRELVELPLRHPQLFKSI--GVKPPK-----GILLYGPPGSGKTLIARAVANETGAFFF 183
+I +++EL PQ S+ G K I L+GP +GKT IA A+A+ T F+
Sbjct: 75 RIYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH-TVPFYG 133
Query: 184 CIN 186
C+N
Sbjct: 134 CVN 136
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 393 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 452
E+ GLE VK + E + +K K P + GPPG GKT LAK+IA
Sbjct: 81 EEHHGLEKVKERILEYLAV-----QKLTKSLKGPI--LCLAGPPGVGKTSLAKSIAKSLG 133
Query: 453 ANFISV 458
F+ +
Sbjct: 134 RKFVRI 139
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFF--FCINGPEIMSKLAGESES-------NLRKAFE 207
+ L GPPG GKT +A+++A G F + G S++ G + + + +
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 208 EAEKNAPSIIFIDEIDSIA 226
+A K P + +DEID ++
Sbjct: 171 KAGKLNP-VFLLDEIDKMS 188
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 155 KGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESESNLRKAFEEA--- 209
+ +L+ G PG+GKT IA A G F I G EI S ++E+ L +AF +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEA-LTQAFRRSIGV 144
Query: 210 --EKNAPSIIFIDEIDSIAPKREKTHG 234
++ P ++ + I +T G
Sbjct: 145 RIKEGPPGVVHTVSLHEIDVINSRTQG 171
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 158 LLYGPPGSGKTLIARAVANET--GAFFFCINGPEIMS----------KLAGESESNLRKA 205
+L G PG GKT I +A G + G I+S K GE E L+
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 206 FEE-AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 264
+E + I+FIDE+ ++ K G V+ ++ +R + +IGAT
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAG------NMLKPALARGELRLIGATT 307
Query: 265 ----RPNSIDPAL-RRF 276
R DPAL RRF
Sbjct: 308 LDEYREIEKDPALERRF 324
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 158 LLYGPPGSGKTLIARAVANE--TGAFFFCINGPEIMS----------KLAGESESNLRKA 205
+L G PG GKT I +A G + G I+S K GE E L+
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 206 FEE-AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 264
+E + I+FIDE+ ++ K G V+ ++ +R + +IGAT
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAG-KAEGAVD------AGNMLKPALARGELRLIGATT 170
Query: 265 ----RPNSIDPAL-RRF 276
R DPAL RRF
Sbjct: 171 LDEYREIEKDPALERRF 187
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 32/150 (21%)
Query: 367 HFKTALGTSNPSALRETVVEVPNVNWED-----IGGLENVKRELQETVQYPVEHPEKFEK 421
H +T S +AL + +++ + E IG E ++R +Q ++ +P
Sbjct: 3 HMQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNP----- 57
Query: 422 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI--SVKGPELLTM----------WFG 469
+ G PG GKT + + +A + +KG ++++ + G
Sbjct: 58 ---------VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRG 108
Query: 470 ESEANVREIFDKARQS-APCVLFFDELDSI 498
E E ++ + + QS +LF DEL ++
Sbjct: 109 EFEERLKAVIQEVVQSQGEVILFIDELHTV 138
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 32.7 bits (73), Expect = 0.79, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 152 KPPKGILLYGPPGSGKTLIARAVANETGAFF 182
+P + +++ G GSGKT IA VA+ETG F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|2Y91|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
pdb|2Y91|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
Length = 265
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 356 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 413
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 414 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 468
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 132 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 183
>pdb|3B3X|A Chain A, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|3B3X|B Chain B, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|2WK0|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WK0|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2X71|A Chain A, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|2X71|B Chain B, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|4A5R|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
pdb|4A5R|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
Length = 265
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 356 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 413
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 414 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 468
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 132 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 183
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNL---RKAFEEAEKNA 213
+L GPPG+GKT A A+A + F N + ++ E + R +E + A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 214 P------SIIFIDEIDSI 225
P IIF+DE D++
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 35/179 (19%)
Query: 430 VLFYGPPGCGKTLLAKAIANE-----CQANFISVKGPELLTMWFGESEANVREIFDKARQ 484
+LF GPPG GKT A A+A + + NFI + + + VR + +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFAR 94
Query: 485 SAPC------VLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGA 538
+AP ++F DE D++ L M +K FI+
Sbjct: 95 TAPIGGAPFKIIFLDEADALTADAQAA---------------LRRTMEMYSKSCRFILSC 139
Query: 539 TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 597
II+P R + P+P E + ++ + C ++ + L AL + G
Sbjct: 140 NYVSRIIEPI---QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 150 GVKPPKGI--LLYGPPGSGKTLIARAVANETGAF 181
++ PKGI L+ G PG+GKT +A +A E F
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGF 37
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN--AP 214
++ GPPG+GK A+ +A E G F I+ +I+ + + +KA E E+ P
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVP 60
Query: 215 SIIFIDEIDSIAPKREKTHGEV 236
+ I I+ + PK HG V
Sbjct: 61 DDLIIALIEEVFPK----HGNV 78
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNL---RKAFEEAEKNA 213
+L GPPG+GKT A A+A + F N + ++ E + R +E + A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 214 P------SIIFIDEIDSI 225
P IIF+DE D++
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 35/179 (19%)
Query: 430 VLFYGPPGCGKTLLAKAIANE-----CQANFISVKGPELLTMWFGESEANVREIFDKARQ 484
+LF GPPG GKT A A+A + + NFI + + + VR + +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFAR 94
Query: 485 SAPC------VLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGA 538
+AP ++F DE D++ L M +K FI+
Sbjct: 95 TAPIGGAPFKIIFLDEADALTADAQAA---------------LRRTMEMYSKSCRFILSC 139
Query: 539 TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 597
II+P R + P+P E + ++ + C ++ + L AL + G
Sbjct: 140 NYVSRIIEPI---QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195
>pdb|1I2S|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2S|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2W|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
Length = 282
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 356 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 413
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 90 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 148
Query: 414 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 468
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 149 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 200
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 39/146 (26%)
Query: 157 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-SKLAGESESNLR---------KAF 206
+L YGPPG+GKT A+ E + GP++M S++ + S+ R K F
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLMKSRILELNASDERGISIVREKVKNF 113
Query: 207 EEAEKNAPS-------------IIFIDEIDSIAPKRE-------KTHGEVER--RIVSQL 244
+ PS II +DE DS+ + +T+ V R I + +
Sbjct: 114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173
Query: 245 LTLMDGLKSRAHVIVIGATNRPNSID 270
++D L S+ A + N+ID
Sbjct: 174 TRIIDPLASQCSKFRFKALDASNAID 199
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 430 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 464
+LFYGPPG GKT A+ E + GP+L+
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLM 88
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 418 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 450
KF G P +LFYGPPG GKT A+A E
Sbjct: 39 KFVDEGKLPH--LLFYGPPGTGKTSTIVALARE 69
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 151 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA- 209
+K P + ++G G GK+ V + G ++ E+ S AGE +R+ + EA
Sbjct: 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 92
Query: 210 ---EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL--TLMDGLKSRAHVIVIGATN 264
K +FI+++D+ A + G + + +Q++ TLM+ + +V + G N
Sbjct: 93 EIIRKGNMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 149
Query: 265 R 265
+
Sbjct: 150 K 150
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 564 PDEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 617
PD +R +F+ + +P V D R L T+G+SG+DI + + A IR+
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 57
>pdb|1W7F|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
pdb|1W7F|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
Length = 307
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 356 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 413
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 115 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 173
Query: 414 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 468
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 174 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 225
>pdb|3LHR|A Chain A, Crystal Structure Of The Scan Domain From Human Znf24
pdb|3LHR|B Chain B, Crystal Structure Of The Scan Domain From Human Znf24
Length = 93
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 94 APDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLR 141
+PD EIF R + GY D G R+ ++Q+REL L LR
Sbjct: 2 SPDPEIF----------RQRFRQFGYQDSPGPREAVSQLRELCRLWLR 39
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 150 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING 187
V+ P LL G PGSGKT + A+ ET I+
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66
>pdb|3SOI|A Chain A, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
pdb|3SOI|B Chain B, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
Length = 258
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 356 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 413
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 70 DLVNYNPITEKHVDTGMTLKELADASLRYSDNAAQNLILKQIGGPESLKKELRK-IGDEV 128
Query: 414 EHPEKFE 420
+PE+FE
Sbjct: 129 TNPERFE 135
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 157 ILLYGPPGSGKTLIARAVANETG 179
+LL G PGSGK+ IA A+AN G
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPG 34
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 162 PPGSGKTLIARAVANETGAFFFCI-NGPEIM 191
PPG+ + L+ARAVA E G F + + PE +
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASNPEFL 177
>pdb|3FAJ|A Chain A, Structure Of The Structural Protein P131 Of The Archaeal
Virus Acidianus Two-Tailed Virus (Atv)
Length = 151
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 188 PEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 234
PE+ KLAGE E+N R+A +E K A I D++ P R K G
Sbjct: 50 PEVTLKLAGE-EANARRAGDERTKEAIHAIVKMISDAMKPYRNKGSG 95
>pdb|2BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|2BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|4BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
pdb|4BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
Length = 265
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 356 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 413
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNAAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 414 EHPEKFE 420
+PE+FE
Sbjct: 132 TNPERFE 138
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 36/152 (23%)
Query: 134 ELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAV---ANETGAF--FFCINGP 188
+++E+ P++ KS K P +L+ G G+GK ++AR + + GAF C + P
Sbjct: 137 KILEIKRLIPKIAKS---KAP--VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIP 191
Query: 189 EIM--SKLAGESESNLRKAFE----EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 242
+ + S+L G + A + E +F+DE+ GE+++R+ +
Sbjct: 192 QELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEV-----------GELDQRVQA 240
Query: 243 QLLTLMD---------GLKSRAHVIVIGATNR 265
+LL +++ K + VI ATN+
Sbjct: 241 KLLRVLETGSFTRLGGNQKIEVDIRVISATNK 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,914,834
Number of Sequences: 62578
Number of extensions: 835209
Number of successful extensions: 2915
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2580
Number of HSP's gapped (non-prelim): 235
length of query: 719
length of database: 14,973,337
effective HSP length: 106
effective length of query: 613
effective length of database: 8,340,069
effective search space: 5112462297
effective search space used: 5112462297
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)