Query 005018
Match_columns 719
No_of_seqs 406 out of 1679
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 16:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 2.2E-91 4.8E-96 710.8 22.1 229 337-566 1-229 (229)
2 PF01852 START: START domain; 99.7 7.9E-18 1.7E-22 167.3 12.3 202 342-566 1-205 (206)
3 smart00234 START in StAR and p 99.7 3.7E-16 7.9E-21 155.8 17.5 202 343-567 2-206 (206)
4 KOG0483 Transcription factor H 99.6 1.5E-16 3.2E-21 159.9 6.6 80 138-217 54-133 (198)
5 KOG0842 Transcription factor t 99.6 1.9E-16 4.2E-21 167.6 7.5 68 130-197 149-216 (307)
6 KOG0488 Transcription factor B 99.6 4.1E-16 8.9E-21 166.8 5.9 66 130-195 168-233 (309)
7 KOG0485 Transcription factor N 99.6 8.6E-16 1.9E-20 153.5 7.3 66 130-195 100-165 (268)
8 KOG0489 Transcription factor z 99.6 4.5E-16 9.8E-21 163.2 3.0 65 132-196 157-221 (261)
9 KOG0843 Transcription factor E 99.6 1.2E-15 2.6E-20 149.1 4.7 64 133-196 101-164 (197)
10 KOG0487 Transcription factor A 99.6 2.4E-15 5.3E-20 159.4 7.4 64 132-195 233-296 (308)
11 KOG0494 Transcription factor C 99.6 2.2E-15 4.7E-20 153.9 5.8 69 138-206 145-213 (332)
12 KOG0850 Transcription factor D 99.6 3.8E-15 8.3E-20 150.5 6.7 72 126-197 114-185 (245)
13 KOG0484 Transcription factor P 99.5 1.3E-15 2.9E-20 136.8 2.3 64 131-194 14-77 (125)
14 KOG0848 Transcription factor C 99.5 3.9E-14 8.5E-19 145.5 12.5 67 131-197 196-262 (317)
15 KOG0492 Transcription factor M 99.5 3.7E-14 7.9E-19 141.2 6.1 64 131-194 141-204 (246)
16 PF00046 Homeobox: Homeobox do 99.5 3.3E-14 7.2E-19 115.0 3.9 57 135-191 1-57 (57)
17 KOG2251 Homeobox transcription 99.4 5.9E-14 1.3E-18 141.4 5.1 67 130-196 33-99 (228)
18 KOG0493 Transcription factor E 99.4 1.3E-12 2.8E-17 133.9 10.3 59 135-193 247-305 (342)
19 KOG0844 Transcription factor E 99.3 6.2E-13 1.4E-17 138.5 3.9 65 130-194 177-241 (408)
20 smart00389 HOX Homeodomain. DN 99.3 1.8E-12 4E-17 104.0 3.6 56 135-190 1-56 (56)
21 cd00086 homeodomain Homeodomai 99.3 2.4E-12 5.2E-17 103.9 4.1 56 136-191 2-57 (59)
22 TIGR01565 homeo_ZF_HD homeobox 99.3 4E-12 8.7E-17 104.7 5.4 53 134-186 1-57 (58)
23 KOG0491 Transcription factor B 99.3 7.2E-13 1.6E-17 128.0 0.2 65 133-197 99-163 (194)
24 KOG0486 Transcription factor P 99.3 4.5E-12 9.8E-17 133.1 6.0 63 132-194 110-172 (351)
25 COG5576 Homeodomain-containing 99.3 3.7E-12 8E-17 124.3 4.4 65 133-197 50-114 (156)
26 cd00177 START Lipid-binding ST 99.2 1.4E-10 2.9E-15 112.8 13.9 189 346-563 2-190 (193)
27 KOG4577 Transcription factor L 99.2 2.6E-11 5.7E-16 125.8 5.7 77 133-209 166-242 (383)
28 KOG3802 Transcription factor O 99.1 2.5E-11 5.4E-16 131.6 4.4 63 131-193 291-353 (398)
29 KOG0847 Transcription factor, 99.1 1.9E-11 4.1E-16 122.8 2.6 66 130-195 163-228 (288)
30 cd08871 START_STARD10-like Lip 99.1 5.6E-09 1.2E-13 106.7 17.0 200 346-578 10-213 (222)
31 cd08867 START_STARD4_5_6-like 99.0 2E-08 4.4E-13 101.5 16.1 195 340-565 3-205 (206)
32 KOG0490 Transcription factor, 98.9 4.7E-10 1E-14 113.9 3.9 64 131-194 57-120 (235)
33 cd08868 START_STARD1_3_like Ch 98.9 2E-08 4.3E-13 101.7 14.8 196 340-568 6-208 (208)
34 cd08904 START_STARD6-like Lipi 98.7 1.4E-07 3E-12 96.3 13.6 172 340-536 3-178 (204)
35 KOG0849 Transcription factor P 98.7 9.5E-09 2.1E-13 112.6 4.2 64 130-193 172-235 (354)
36 cd08903 START_STARD5-like Lipi 98.6 1.1E-06 2.3E-11 89.7 15.6 193 340-565 3-205 (208)
37 KOG1168 Transcription factor A 98.6 3.8E-08 8.2E-13 102.8 3.6 63 131-193 306-368 (385)
38 cd08869 START_RhoGAP C-termina 98.4 2.3E-06 5E-11 86.4 13.2 168 345-541 4-174 (197)
39 cd08909 START_STARD13-like C-t 98.4 2.7E-06 5.8E-11 87.0 13.1 129 393-536 48-178 (205)
40 PLN00188 enhanced disease resi 98.4 1.9E-06 4.1E-11 100.4 12.9 129 397-538 227-365 (719)
41 cd08905 START_STARD1-like Chol 98.4 3.4E-06 7.4E-11 86.0 12.4 192 340-566 6-207 (209)
42 cd08906 START_STARD3-like Chol 98.3 1.6E-05 3.5E-10 81.3 14.8 196 339-566 5-207 (209)
43 cd08902 START_STARD4-like Lipi 98.3 1.3E-05 2.9E-10 81.5 13.7 192 340-564 3-200 (202)
44 KOG0775 Transcription factor S 98.2 1.1E-06 2.4E-11 91.8 3.8 50 141-190 183-232 (304)
45 cd08910 START_STARD2-like Lipi 98.1 3.6E-05 7.8E-10 78.5 12.3 183 352-567 17-206 (207)
46 cd08877 START_2 Uncharacterize 97.9 0.00012 2.7E-09 74.5 13.2 200 340-566 3-213 (215)
47 cd08908 START_STARD12-like C-t 97.9 0.00015 3.2E-09 74.3 12.5 162 344-534 11-175 (204)
48 KOG0774 Transcription factor P 97.9 7.7E-06 1.7E-10 84.9 3.1 59 135-193 189-250 (334)
49 cd08876 START_1 Uncharacterize 97.8 0.00024 5.2E-09 70.7 12.6 152 398-565 42-194 (195)
50 cd08874 START_STARD9-like C-te 97.7 0.00021 4.5E-09 73.2 10.7 130 391-539 44-181 (205)
51 PF05920 Homeobox_KN: Homeobox 97.7 1.1E-05 2.5E-10 61.9 0.6 34 155-188 7-40 (40)
52 cd08907 START_STARD8-like C-te 97.6 0.00031 6.8E-09 71.8 9.4 165 344-536 11-178 (205)
53 KOG0490 Transcription factor, 97.5 7.2E-05 1.6E-09 76.1 4.3 65 130-194 149-213 (235)
54 KOG2252 CCAAT displacement pro 97.5 8.8E-05 1.9E-09 84.1 4.3 61 130-190 416-476 (558)
55 cd08870 START_STARD2_7-like Li 97.4 0.0021 4.5E-08 65.5 13.4 153 397-567 50-208 (209)
56 cd08872 START_STARD11-like Cer 97.4 0.0052 1.1E-07 64.2 15.3 195 345-565 9-224 (235)
57 cd08911 START_STARD7-like Lipi 97.2 0.004 8.7E-08 63.5 12.5 152 398-567 46-206 (207)
58 cd08873 START_STARD14_15-like 96.8 0.0083 1.8E-07 62.9 10.7 123 393-532 78-203 (235)
59 KOG1146 Homeobox protein [Gene 96.4 0.0022 4.8E-08 79.0 3.6 62 133-194 902-963 (1406)
60 cd08913 START_STARD14-like Lip 96.2 0.041 8.8E-07 57.9 11.2 126 402-541 86-215 (240)
61 cd08914 START_STARD15-like Lip 96.0 0.039 8.5E-07 57.9 10.0 129 398-541 79-211 (236)
62 KOG0773 Transcription factor M 94.9 0.021 4.6E-07 62.4 3.7 62 134-195 239-303 (342)
63 PF11569 Homez: Homeodomain le 94.6 0.015 3.2E-07 48.1 1.1 42 145-186 9-50 (56)
64 PRK09413 IS2 repressor TnpA; R 92.8 0.5 1.1E-05 44.4 8.1 40 139-183 11-51 (121)
65 KOG4196 bZIP transcription fac 90.5 1.2 2.7E-05 42.7 7.9 86 139-258 22-108 (135)
66 cd08876 START_1 Uncharacterize 90.2 0.51 1.1E-05 46.9 5.6 59 610-677 14-72 (195)
67 cd08871 START_STARD10-like Lip 89.7 0.6 1.3E-05 47.9 5.7 59 611-678 21-80 (222)
68 cd08874 START_STARD9-like C-te 89.3 0.69 1.5E-05 47.7 5.8 59 610-678 19-77 (205)
69 cd08873 START_STARD14_15-like 89.2 0.65 1.4E-05 48.9 5.5 66 611-689 53-118 (235)
70 cd08860 TcmN_ARO-CYC_like N-te 88.7 4.8 0.0001 39.0 10.8 138 401-567 5-144 (146)
71 cd08904 START_STARD6-like Lipi 88.3 0.73 1.6E-05 47.5 5.2 58 612-678 21-78 (204)
72 cd08870 START_STARD2_7-like Li 87.8 1 2.2E-05 46.0 5.8 56 613-677 22-82 (209)
73 cd05018 CoxG Carbon monoxide d 87.5 4.7 0.0001 37.1 9.6 119 402-546 6-124 (144)
74 cd08914 START_STARD15-like Lip 87.1 1 2.2E-05 47.5 5.4 57 610-677 53-109 (236)
75 cd08866 SRPBCC_11 Ligand-bindi 86.4 7.6 0.00016 36.1 10.5 132 401-566 3-143 (144)
76 cd08864 SRPBCC_DUF3074 DUF3074 85.9 3.5 7.6E-05 42.6 8.6 103 432-540 76-184 (208)
77 PF02183 HALZ: Homeobox associ 85.7 1.6 3.5E-05 34.6 4.6 40 193-260 2-41 (45)
78 KOG3623 Homeobox transcription 85.6 0.56 1.2E-05 55.7 2.8 47 146-192 568-614 (1007)
79 cd08910 START_STARD2-like Lipi 85.5 1.1 2.4E-05 45.9 4.7 59 610-677 22-81 (207)
80 cd08907 START_STARD8-like C-te 85.4 1.6 3.4E-05 45.2 5.7 65 610-690 24-89 (205)
81 KOG4005 Transcription factor X 85.3 5.6 0.00012 41.9 9.5 60 183-256 82-143 (292)
82 cd08903 START_STARD5-like Lipi 84.6 1.4 3E-05 45.2 4.8 61 611-680 20-82 (208)
83 cd08902 START_STARD4-like Lipi 83.8 1.9 4E-05 44.6 5.3 61 611-680 21-81 (202)
84 cd08911 START_STARD7-like Lipi 83.7 1.6 3.5E-05 44.6 4.9 59 611-678 19-78 (207)
85 PRK15422 septal ring assembly 83.7 4.1 8.9E-05 36.1 6.6 61 190-264 12-76 (79)
86 cd08913 START_STARD14-like Lip 83.2 1.8 4E-05 45.7 5.2 57 610-677 56-112 (240)
87 cd07819 SRPBCC_2 Ligand-bindin 83.2 12 0.00026 34.2 10.1 132 401-564 6-139 (140)
88 KOG2761 START domain-containin 82.9 6.5 0.00014 41.1 8.9 138 406-563 63-210 (219)
89 PF06005 DUF904: Protein of un 82.5 4.2 9.2E-05 35.4 6.3 51 192-263 14-68 (72)
90 cd08877 START_2 Uncharacterize 82.3 2.2 4.8E-05 43.5 5.3 90 599-705 10-99 (215)
91 cd07813 COQ10p_like Coenzyme Q 82.0 9.6 0.00021 35.4 9.1 134 402-567 4-137 (138)
92 PF04218 CENP-B_N: CENP-B N-te 81.9 1.6 3.4E-05 35.5 3.2 46 135-185 1-46 (53)
93 cd07821 PYR_PYL_RCAR_like Pyra 81.5 21 0.00047 32.2 11.1 134 403-566 7-140 (140)
94 cd08867 START_STARD4_5_6-like 81.3 5.1 0.00011 40.7 7.4 72 592-678 7-80 (206)
95 cd00177 START Lipid-binding ST 80.7 3.7 8.1E-05 39.7 6.1 56 613-677 15-70 (193)
96 PRK10724 hypothetical protein; 79.9 22 0.00048 35.1 11.2 137 400-568 18-154 (158)
97 cd07817 SRPBCC_8 Ligand-bindin 79.3 33 0.00072 31.2 11.6 133 403-566 6-138 (139)
98 cd08861 OtcD1_ARO-CYC_like N-t 78.6 14 0.00031 34.1 9.0 27 402-428 4-30 (142)
99 TIGR00219 mreC rod shape-deter 78.4 3 6.6E-05 45.0 5.0 42 197-255 67-108 (283)
100 PF10604 Polyketide_cyc2: Poly 78.3 52 0.0011 29.7 13.1 35 402-440 7-41 (139)
101 COG3074 Uncharacterized protei 77.3 9 0.0002 33.3 6.4 60 191-264 13-76 (79)
102 cd08869 START_RhoGAP C-termina 76.6 8.9 0.00019 38.9 7.5 57 611-677 17-73 (197)
103 cd08868 START_STARD1_3_like Ch 76.4 6.4 0.00014 40.0 6.4 59 612-679 23-82 (208)
104 PF12711 Kinesin-relat_1: Kine 74.0 8.2 0.00018 34.8 5.6 47 200-261 21-67 (86)
105 cd08872 START_STARD11-like Cer 73.9 9.6 0.00021 40.0 7.2 61 609-677 22-84 (235)
106 PRK13922 rod shape-determining 73.1 5.2 0.00011 42.6 5.0 41 197-255 70-110 (276)
107 cd07822 SRPBCC_4 Ligand-bindin 72.1 38 0.00081 30.6 9.9 51 513-566 91-141 (141)
108 KOG0971 Microtubule-associated 67.6 17 0.00036 44.9 7.9 56 201-262 337-392 (1243)
109 cd08865 SRPBCC_10 Ligand-bindi 66.2 70 0.0015 28.7 10.3 135 403-566 5-139 (140)
110 cd08906 START_STARD3-like Chol 64.1 19 0.00041 37.1 6.7 56 612-676 24-80 (209)
111 cd07818 SRPBCC_1 Ligand-bindin 62.5 59 0.0013 30.4 9.3 51 515-566 99-149 (150)
112 PF01527 HTH_Tnp_1: Transposas 62.4 1.3 2.8E-05 37.5 -1.8 43 136-182 2-44 (76)
113 KOG4343 bZIP transcription fac 62.4 17 0.00037 42.4 6.5 25 356-382 439-463 (655)
114 cd08908 START_STARD12-like C-t 61.8 15 0.00033 37.9 5.6 53 614-676 28-80 (204)
115 PF07407 Seadorna_VP6: Seadorn 54.3 17 0.00036 40.2 4.4 21 197-217 33-53 (420)
116 TIGR03752 conj_TIGR03752 integ 53.8 21 0.00045 41.3 5.4 22 240-261 111-132 (472)
117 PRK14872 rod shape-determining 53.5 14 0.00029 41.2 3.7 42 196-255 57-98 (337)
118 smart00340 HALZ homeobox assoc 53.3 14 0.0003 29.2 2.7 19 242-260 16-34 (44)
119 PF04880 NUDE_C: NUDE protein, 52.8 15 0.00032 37.0 3.6 20 239-258 25-44 (166)
120 PF06156 DUF972: Protein of un 52.0 32 0.00069 32.2 5.4 21 239-259 37-57 (107)
121 COG1792 MreC Cell shape-determ 50.9 35 0.00076 37.0 6.3 43 195-255 65-107 (284)
122 KOG1146 Homeobox protein [Gene 50.4 23 0.00049 45.5 5.3 94 135-241 445-539 (1406)
123 PRK13169 DNA replication intia 50.2 57 0.0012 30.8 6.8 20 239-258 37-56 (110)
124 smart00338 BRLZ basic region l 49.6 67 0.0015 26.8 6.6 39 195-254 25-63 (65)
125 PRK00888 ftsB cell division pr 48.9 34 0.00075 31.7 5.1 40 177-217 16-55 (105)
126 KOG4403 Cell surface glycoprot 48.7 52 0.0011 37.8 7.2 25 339-364 398-422 (575)
127 COG4026 Uncharacterized protei 46.8 55 0.0012 34.6 6.6 49 189-258 142-190 (290)
128 PF15058 Speriolin_N: Sperioli 45.5 33 0.00071 35.4 4.7 40 198-259 7-46 (200)
129 PF14389 Lzipper-MIP1: Leucine 45.2 1.5E+02 0.0032 26.8 8.4 71 187-260 6-76 (88)
130 PF06785 UPF0242: Uncharacteri 44.2 35 0.00076 37.9 5.0 73 181-265 54-126 (401)
131 cd07823 SRPBCC_5 Ligand-bindin 43.8 11 0.00024 35.7 1.1 26 650-675 3-28 (146)
132 KOG4571 Activating transcripti 43.1 73 0.0016 34.8 7.1 45 191-256 243-287 (294)
133 cd07824 SRPBCC_6 Ligand-bindin 43.0 2.2E+02 0.0048 26.8 9.8 119 404-548 8-129 (146)
134 KOG0709 CREB/ATF family transc 41.6 6.4E+02 0.014 29.6 15.4 97 138-262 218-317 (472)
135 smart00234 START in StAR and p 40.4 57 0.0012 32.5 5.6 60 612-678 18-78 (206)
136 PF14197 Cep57_CLD_2: Centroso 40.1 87 0.0019 27.1 5.9 19 239-257 48-66 (69)
137 TIGR02449 conserved hypothetic 38.5 1.2E+02 0.0027 26.1 6.4 44 199-263 10-53 (65)
138 PF00170 bZIP_1: bZIP transcri 38.4 1.5E+02 0.0033 24.6 7.0 23 195-217 25-47 (64)
139 KOG2761 START domain-containin 38.3 18 0.00038 38.0 1.6 59 609-677 25-85 (219)
140 cd07819 SRPBCC_2 Ligand-bindin 38.2 24 0.00052 32.2 2.4 30 648-677 4-33 (140)
141 cd06171 Sigma70_r4 Sigma70, re 38.0 19 0.00041 27.0 1.4 42 140-186 10-51 (55)
142 cd08865 SRPBCC_10 Ligand-bindi 37.9 20 0.00044 32.3 1.8 28 649-676 2-29 (140)
143 PF10604 Polyketide_cyc2: Poly 37.4 31 0.00068 31.2 3.0 28 649-676 5-32 (139)
144 PF04545 Sigma70_r4: Sigma-70, 36.8 35 0.00076 26.7 2.8 39 140-183 4-42 (50)
145 cd07823 SRPBCC_5 Ligand-bindin 36.8 3.6E+02 0.0078 25.3 10.7 29 401-429 3-31 (146)
146 PRK03975 tfx putative transcri 36.6 42 0.00091 33.0 3.8 46 139-190 5-50 (141)
147 cd08909 START_STARD13-like C-t 36.6 71 0.0015 33.2 5.7 54 613-676 27-80 (205)
148 TIGR00219 mreC rod shape-deter 35.7 61 0.0013 35.1 5.3 47 198-261 61-107 (283)
149 KOG3119 Basic region leucine z 34.9 99 0.0021 33.3 6.7 24 240-263 231-254 (269)
150 cd08905 START_STARD1-like Chol 34.7 1E+02 0.0022 31.6 6.5 77 591-678 5-82 (209)
151 TIGR03752 conj_TIGR03752 integ 34.7 1E+02 0.0023 35.8 7.1 25 235-259 113-137 (472)
152 cd07821 PYR_PYL_RCAR_like Pyra 34.7 29 0.00064 31.3 2.4 28 649-676 4-31 (140)
153 cd05018 CoxG Carbon monoxide d 33.6 22 0.00047 32.6 1.3 27 650-676 5-31 (144)
154 cd08866 SRPBCC_11 Ligand-bindi 33.5 26 0.00057 32.4 1.9 28 649-676 2-29 (144)
155 cd07812 SRPBCC START/RHO_alpha 33.3 3.1E+02 0.0067 23.5 10.4 35 402-440 4-38 (141)
156 cd08901 SRPBCC_CalC_Aha1-like_ 33.0 26 0.00056 32.9 1.7 27 648-674 2-28 (136)
157 cd07817 SRPBCC_8 Ligand-bindin 33.0 31 0.00067 31.4 2.2 28 649-676 3-30 (139)
158 cd08862 SRPBCC_Smu440-like Lig 31.7 34 0.00073 31.2 2.2 30 647-676 2-31 (138)
159 PRK06266 transcription initiat 31.4 47 0.001 33.7 3.3 34 222-255 137-170 (178)
160 KOG0288 WD40 repeat protein Ti 30.8 1.3E+02 0.0028 34.6 6.8 118 390-529 228-348 (459)
161 PRK13729 conjugal transfer pil 30.5 1.2E+02 0.0027 35.4 6.8 56 186-255 66-121 (475)
162 cd07814 SRPBCC_CalC_Aha1-like 30.4 29 0.00064 31.5 1.6 28 649-676 3-30 (139)
163 PF04967 HTH_10: HTH DNA bindi 30.3 66 0.0014 26.5 3.4 38 141-178 1-40 (53)
164 KOG3156 Uncharacterized membra 30.3 1.6E+02 0.0034 31.0 6.9 48 194-261 92-139 (220)
165 cd07825 SRPBCC_7 Ligand-bindin 30.0 36 0.00079 31.5 2.2 26 650-675 4-29 (144)
166 cd07812 SRPBCC START/RHO_alpha 29.4 36 0.00079 29.5 2.0 27 650-676 3-29 (141)
167 cd07818 SRPBCC_1 Ligand-bindin 29.4 57 0.0012 30.4 3.4 31 648-678 4-34 (150)
168 KOG3755 SATB1 matrix attachmen 28.6 15 0.00032 43.4 -0.8 56 140-195 697-760 (769)
169 PF12824 MRP-L20: Mitochondria 28.5 1.4E+02 0.0031 30.0 6.1 46 139-186 84-129 (164)
170 KOG3119 Basic region leucine z 28.3 31 0.00067 37.1 1.5 26 239-264 223-248 (269)
171 PF07106 TBPIP: Tat binding pr 27.3 98 0.0021 30.6 4.8 47 178-224 56-107 (169)
172 PF15392 Joubert: Joubert synd 26.5 4.9E+02 0.011 29.1 10.0 27 393-419 240-268 (329)
173 smart00340 HALZ homeobox assoc 26.3 62 0.0013 25.7 2.4 27 193-219 2-28 (44)
174 PRK00888 ftsB cell division pr 25.9 78 0.0017 29.4 3.5 36 181-216 26-61 (105)
175 cd00569 HTH_Hin_like Helix-tur 25.8 90 0.002 20.6 3.1 36 141-181 6-41 (42)
176 COG5570 Uncharacterized small 25.3 1.4E+02 0.003 24.9 4.3 35 214-259 20-54 (57)
177 PF08961 DUF1875: Domain of un 25.3 24 0.00051 37.1 0.0 36 194-250 127-162 (243)
178 PRK13922 rod shape-determining 25.1 1.5E+02 0.0033 31.4 6.1 47 197-261 63-109 (276)
179 cd07820 SRPBCC_3 Ligand-bindin 24.3 49 0.0011 30.9 2.0 26 650-675 3-28 (137)
180 KOG4343 bZIP transcription fac 24.3 91 0.002 36.8 4.3 18 239-256 317-334 (655)
181 cd07822 SRPBCC_4 Ligand-bindin 24.2 58 0.0012 29.4 2.3 27 650-676 4-30 (141)
182 PRK10884 SH3 domain-containing 24.1 2.5E+02 0.0054 29.2 7.2 19 201-219 130-148 (206)
183 PRK00118 putative DNA-binding 23.9 1.9E+02 0.0042 27.0 5.7 48 141-193 18-65 (104)
184 TIGR02209 ftsL_broad cell divi 23.4 2.3E+02 0.005 24.5 5.9 20 246-266 53-72 (85)
185 PRK10884 SH3 domain-containing 23.3 2.3E+02 0.0051 29.4 6.8 41 195-256 131-171 (206)
186 PF07334 IFP_35_N: Interferon- 23.0 90 0.002 27.7 3.1 18 242-259 4-21 (76)
187 cd01106 HTH_TipAL-Mta Helix-Tu 22.1 2.5E+02 0.0054 25.4 6.0 36 138-186 36-71 (103)
188 PF10482 CtIP_N: Tumour-suppre 21.9 44 0.00094 31.8 1.0 32 198-229 44-75 (120)
189 PF00196 GerE: Bacterial regul 21.8 67 0.0015 25.9 2.0 45 139-189 2-46 (58)
190 PHA03162 hypothetical protein; 21.8 2.6E+02 0.0057 27.3 6.2 27 196-222 13-39 (135)
191 KOG4196 bZIP transcription fac 21.7 5.2E+02 0.011 25.3 8.1 39 195-261 80-118 (135)
192 PF07151 DUF1391: Protein of u 21.2 45 0.00098 26.5 0.9 8 552-559 38-45 (49)
193 PF07716 bZIP_2: Basic region 21.1 2.5E+02 0.0055 22.6 5.2 38 185-253 17-54 (54)
194 PRK09413 IS2 repressor TnpA; R 21.0 1.8E+02 0.004 27.2 5.1 13 241-253 88-100 (121)
195 cd08898 SRPBCC_CalC_Aha1-like_ 20.8 69 0.0015 29.5 2.2 28 649-676 4-31 (145)
196 cd07824 SRPBCC_6 Ligand-bindin 20.7 64 0.0014 30.4 2.0 28 649-676 4-31 (146)
197 COG1675 TFA1 Transcription ini 20.5 88 0.0019 31.9 2.9 36 223-258 134-169 (176)
198 PF05494 Tol_Tol_Ttg2: Toluene 20.2 1.4E+02 0.003 29.4 4.3 56 434-494 85-140 (170)
199 TIGR03879 near_KaiC_dom probab 20.2 36 0.00079 29.9 0.1 35 150-184 21-55 (73)
200 PRK13169 DNA replication intia 20.2 3.9E+02 0.0085 25.3 7.0 45 199-264 11-55 (110)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=2.2e-91 Score=710.79 Aligned_cols=229 Identities=61% Similarity=1.029 Sum_probs=220.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHh
Q 005018 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (719)
Q Consensus 337 k~~~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l 416 (719)
|++|+|||++||+||++||++++|||+++.+++ +|+||+|||.++|++..|.++.||++|||||||+|+||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~-~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMK-PEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCC-ccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 578999999999999999999999999988777 7999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCCeEEEEEEeccCccC
Q 005018 417 MDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 496 (719)
Q Consensus 417 mD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g~waVvDvSld~~~~ 496 (719)
||+++|.++||+||++|+|++||++|.+|+|||+|||||+|||+||||||+|||||||||||++||+|||||||+|..+.
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005018 497 TSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (719)
Q Consensus 497 ~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (719)
.+..+.++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 3333458999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.74 E-value=7.9e-18 Score=167.29 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCeeecc--CCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh
Q 005018 342 ELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (719)
Q Consensus 342 ~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (719)
|+|.++|.+++++++.++.-|.... ++. +.|.+..+.. .+..+..-|..++|...+.++++.|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~ 68 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNG-------DVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDD 68 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTT-------CEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCC-------eEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhh
Confidence 6899999999999999999998855 322 2233322221 1146678899999999999999999998
Q ss_pred h-hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCCeEEEEEEeccCccCCC
Q 005018 420 N-RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 498 (719)
Q Consensus 420 ~-~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g~waVvDvSld~~~~~~ 498 (719)
. +|-.++- .+..++.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.-...+
T Consensus 69 ~~~Wd~~~~----~~~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~ 137 (206)
T PF01852_consen 69 REQWDKMCV----EAEVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPP 137 (206)
T ss_dssp GGHHSTTEE----EEEEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSST
T ss_pred Hhhcccchh----hheeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccc
Confidence 8 8988854 47888888854 678888899999999999 9999999999999999999999998654433
Q ss_pred CCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005018 499 GAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (719)
Q Consensus 499 ~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (719)
..+.++|+..++||++|++.++|.|+||+|-|++..-+...-+++.++.+...--++.+.+.|++|++
T Consensus 138 ~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 138 NSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp T-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 12358999999999999999999999999999999999999999999999999989999999988865
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.70 E-value=3.7e-16 Score=155.81 Aligned_cols=202 Identities=34% Similarity=0.526 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHhhcCCCCCeeeccC--CCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhh-HHHHhcCh
Q 005018 343 LALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLA-LVETLMDP 419 (719)
Q Consensus 343 lA~~Am~El~~la~~~eplWi~~~~--~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~-LVe~lmD~ 419 (719)
-|+.++.|+++++...+..|....+ .+ ..|.+.+ .+.+....+-|..++|...+.+ ++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENG-------DEVRSIL------SPGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCc-------ceEEEEc------cCCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 3678899999999999999998654 22 1121111 1123557899999999999997 55666665
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCCeEEEEEEeccCccCCCC
Q 005018 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSG 499 (719)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g~waVvDvSld~~~~~~~ 499 (719)
.+...+-..+..+++++.++.+ ..|......+.. +| +..|||.++|++++.++|.|+|+..|++.-.. +.
T Consensus 69 -~~r~~Wd~~~~~~~~ie~~~~~------~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-p~ 138 (206)
T smart00234 69 -RYRPEWDKNVAKAETLEVIDNG------TVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-PP 138 (206)
T ss_pred -cchhhCchhcccEEEEEEECCC------CeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-CC
Confidence 2333333334568888888743 233333333333 35 55699999999999999999999999986432 21
Q ss_pred CCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 005018 500 APAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 567 (719)
Q Consensus 500 ~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cer 567 (719)
.+.++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 139 ~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 139 TSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 23579999999999999999999999999999999988889999999999999999999999999973
No 4
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.64 E-value=1.5e-16 Score=159.92 Aligned_cols=80 Identities=33% Similarity=0.508 Sum_probs=74.5
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhhhhHHHHHhHHHHHhhHhHHh
Q 005018 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (719)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e 217 (719)
+.|||.+|+..||+.|+...|+.+.++..||++|||.+|||+|||||||||||.++...++..|+.+.+.|+.+|..+..
T Consensus 54 k~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~ 133 (198)
T KOG0483|consen 54 KRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQS 133 (198)
T ss_pred cccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999987665553
No 5
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.64 E-value=1.9e-16 Score=167.59 Aligned_cols=68 Identities=32% Similarity=0.446 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhh
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (719)
...+|||+|..||..|+.+||+.|+.++|++..+|++||+.|+|++.||||||||||-|.||+++.++
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 35567778888999999999999999999999999999999999999999999999999999877644
No 6
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.61 E-value=4.1e-16 Score=166.83 Aligned_cols=66 Identities=36% Similarity=0.473 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
..+|+||.|+.||..|+.+||+.|++.+|++..+|.+||++|||+..|||+||||||+||||+..+
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 347778889999999999999999999999999999999999999999999999999999987765
No 7
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.61 E-value=8.6e-16 Score=153.54 Aligned_cols=66 Identities=33% Similarity=0.427 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
.+.+|||.||.|+..|+..||..|+..+|++..+|..||++|.|++.||||||||||.|||++...
T Consensus 100 g~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 100 GDDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 345788899999999999999999999999999999999999999999999999999999986543
No 8
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.58 E-value=4.5e-16 Score=163.23 Aligned_cols=65 Identities=34% Similarity=0.475 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHh
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (719)
.+.||.|+.||..|+.+||+.|+.++|++...|.|||..|.|+|+||||||||||+||||.++..
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 45788999999999999999999999999999999999999999999999999999999866553
No 9
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.57 E-value=1.2e-15 Score=149.06 Aligned_cols=64 Identities=34% Similarity=0.479 Sum_probs=61.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHh
Q 005018 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (719)
Q Consensus 133 kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (719)
|.||.||.||.+|+..||..|+.++|..-.+|++||+.|+|++.||||||||||+|.||++.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 6688899999999999999999999999999999999999999999999999999999988775
No 10
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.57 E-value=2.4e-15 Score=159.35 Aligned_cols=64 Identities=39% Similarity=0.445 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
++.||||.-+|+.|+.+||+.|-.|.|.+.+.|.||++.|+|++|||||||||||.|+||..++
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re 296 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRE 296 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhh
Confidence 5567788899999999999999999999999999999999999999999999999999998754
No 11
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.56 E-value=2.2e-15 Score=153.86 Aligned_cols=69 Identities=32% Similarity=0.451 Sum_probs=64.7
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhhhhHHHHHhH
Q 005018 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (719)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~ 206 (719)
||.||..|+++||+.|++.+||+...|+-||-++.|.+.+|+|||||||+||||+.++.......+|+.
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeyg 213 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYG 213 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhc
Confidence 788999999999999999999999999999999999999999999999999999999988777766653
No 12
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.56 E-value=3.8e-15 Score=150.45 Aligned_cols=72 Identities=28% Similarity=0.361 Sum_probs=65.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhh
Q 005018 126 LDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (719)
Q Consensus 126 ~~~~~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (719)
.-.++.+|.||.||.|+.-||+.|.+.|+++.|+-..+|.+||..|||+..||||||||||.|.||..+..+
T Consensus 114 ~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~ 185 (245)
T KOG0850|consen 114 RPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGS 185 (245)
T ss_pred ccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCC
Confidence 344567778899999999999999999999999999999999999999999999999999999999877433
No 13
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.55 E-value=1.3e-15 Score=136.76 Aligned_cols=64 Identities=31% Similarity=0.527 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
.+|.||-|+.||..|+.+||+.|.+.+||+...|++||.++.|++.+|||||||||+|.||+..
T Consensus 14 krKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr 77 (125)
T KOG0484|consen 14 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQER 77 (125)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999999999997653
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.54 E-value=3.9e-14 Score=145.48 Aligned_cols=67 Identities=31% Similarity=0.412 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhh
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (719)
-+.|-|.|.++|..|..+||+.|..++|.++..+.|||.-|+|+||||||||||||+|+||.++++-
T Consensus 196 tRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 196 TRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred eecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 3445677889999999999999999999999999999999999999999999999999998877653
No 15
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.48 E-value=3.7e-14 Score=141.23 Aligned_cols=64 Identities=39% Similarity=0.510 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
.+..||.|+-||.+|+..||+.|++.+|++..+|.+++..|.|++.||||||||||+|.||.++
T Consensus 141 hk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 141 HKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 3445788999999999999999999999999999999999999999999999999999998664
No 16
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.46 E-value=3.3e-14 Score=115.05 Aligned_cols=57 Identities=47% Similarity=0.737 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
||+|+.||.+|+..||..|..++||+..++++||.++||++.||++||||||.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999985
No 17
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.45 E-value=5.9e-14 Score=141.36 Aligned_cols=67 Identities=30% Similarity=0.513 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHh
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (719)
..+|.||.||+||..|+++||+.|.+..|||...|++||.+|+|.+.+|||||.|||+|+|++++.+
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 3467789999999999999999999999999999999999999999999999999999999877654
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.39 E-value=1.3e-12 Score=133.89 Aligned_cols=59 Identities=36% Similarity=0.580 Sum_probs=56.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
||.||.||.+||+.|...|++++|++...|++||.+|+|.+.||||||||+|+|.||-.
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 56789999999999999999999999999999999999999999999999999999754
No 19
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.33 E-value=6.2e-13 Score=138.54 Aligned_cols=65 Identities=31% Similarity=0.375 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
....-||.||.||.+||..||+.|-+..|-+...|.|||..|+|.+..|||||||||.|+|||..
T Consensus 177 a~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 177 ADDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred ccHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhh
Confidence 34456889999999999999999999999999999999999999999999999999999998654
No 20
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.29 E-value=1.8e-12 Score=103.96 Aligned_cols=56 Identities=45% Similarity=0.788 Sum_probs=52.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (719)
++.|++|+.+|+..||+.|..++||+..++.+||+.+||+..||+.||+|||.+.|
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 35567799999999999999999999999999999999999999999999998864
No 21
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.28 E-value=2.4e-12 Score=103.93 Aligned_cols=56 Identities=48% Similarity=0.832 Sum_probs=53.2
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
+++..++.+|+..||+.|..++||+..++.+||.++||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999885
No 22
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.28 E-value=4e-12 Score=104.65 Aligned_cols=53 Identities=15% Similarity=0.378 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCC----CChHHHHHHHHHhcccccceeccccchh
Q 005018 134 RKKRYHRHTPQQIQELESLFKECPH----PDEKQRLELSKRLCLETRQVKFWFQNRR 186 (719)
Q Consensus 134 kkr~RtrfT~~Ql~~LE~~F~~~~y----Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (719)
+||.||.||.+|++.||..|..++| |+...+.+||..+||++++|||||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4788999999999999999999999 9999999999999999999999999964
No 23
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.27 E-value=7.2e-13 Score=128.00 Aligned_cols=65 Identities=34% Similarity=0.462 Sum_probs=60.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhh
Q 005018 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (719)
Q Consensus 133 kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (719)
+++|-|+.|+..|+..||+.|+..+|++..+|.|||..|+|++.|||.||||||+|.||++++.+
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 46778999999999999999999999999999999999999999999999999999998877644
No 24
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.26 E-value=4.5e-12 Score=133.10 Aligned_cols=63 Identities=30% Similarity=0.523 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
.|+||.|+.||.+|+++||..|++++||+...|++||...+|++.+|+|||.|||+||||++.
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrEr 172 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 172 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhh
Confidence 467888999999999999999999999999999999999999999999999999999997543
No 25
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.25 E-value=3.7e-12 Score=124.28 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=59.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhh
Q 005018 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (719)
Q Consensus 133 kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (719)
..+++|.|.|.+|+.+|++.|+.++||+...|.+|+..|+++++-||+||||||++.|++.....
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 34666778999999999999999999999999999999999999999999999999998766543
No 26
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.23 E-value=1.4e-10 Score=112.83 Aligned_cols=189 Identities=18% Similarity=0.254 Sum_probs=137.7
Q ss_pred HHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcChhhhhhh
Q 005018 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEM 425 (719)
Q Consensus 346 ~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~~~W~~~ 425 (719)
.|..+++.+.+.+ .-|-...+.+ +..-|.+.++.. ....-|..++|-.++.+++++|+|.+....-
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~-----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD-----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC-----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4667888887766 6798754432 122344443322 3357788999999999999999994433322
Q ss_pred cccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCCeEEEEEEeccCccCCCCCCCccc
Q 005018 426 FPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVN 505 (719)
Q Consensus 426 Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g~waVvDvSld~~~~~~~~~~~~~ 505 (719)
.+ .+.+++.++.++. ...++|..+..+.| +..|||.++|++.+.++|.++|+..|+|.-. .+..+.++|
T Consensus 68 ~~-~~~~~~vl~~~~~--------~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~~vR 136 (193)
T cd00177 68 DK-NFEEFEVIEEIDE--------HTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKGYVR 136 (193)
T ss_pred hh-cceEEEEEEEeCC--------CeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCCcEE
Confidence 22 2344566665542 26889999999999 9999999999999999999999999999741 121224799
Q ss_pred eeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 005018 506 CRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 563 (719)
Q Consensus 506 ~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR 563 (719)
++.+++|++|+++++|.|+||++-|++..-+.. ..++++.+.-.+..++..++.
T Consensus 137 ~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 137 AEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 999999999999999999999999999886543 445666666666777766644
No 27
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.17 E-value=2.6e-11 Score=125.83 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=69.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhhhhHHHHHhHHHH
Q 005018 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLR 209 (719)
Q Consensus 133 kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~ 209 (719)
..||.||.+|..|++.|...|+..++|-...|++|+.++||.-|.|||||||||+|+|+.++......+-|-...++
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfrsmK 242 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFRSMK 242 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHHHhh
Confidence 34888999999999999999999999999999999999999999999999999999999999888888877554433
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.14 E-value=2.5e-11 Score=131.59 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
..|||||||.|+......||++|.+|++|+..++.+||.+|+|+...|+|||+|||.|+||..
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 347888999999999999999999999999999999999999999999999999999999644
No 29
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.13 E-value=1.9e-11 Score=122.81 Aligned_cols=66 Identities=33% Similarity=0.455 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
++.++|..|..|+..||..||+.|+..+|+-...|.+||..+|+++.||+|||||||+||||+..-
T Consensus 163 kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 163 LNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred cCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhcc
Confidence 345667778889999999999999999999999999999999999999999999999999987643
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.05 E-value=5.6e-09 Score=106.69 Aligned_cols=200 Identities=13% Similarity=0.180 Sum_probs=146.2
Q ss_pred HHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeE-EechhhHHHHhcCh---hh
Q 005018 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDP---NR 421 (719)
Q Consensus 346 ~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV-~m~~~~LVe~lmD~---~~ 421 (719)
+.+++|+.++..+ .-|-...+... .++|.+.. .+...-.-|..+++ ...+..+.+.|+|. .+
T Consensus 10 ~~~~~~~~~~~~~-~~W~~~~~~~g---------i~iy~r~~----~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~ 75 (222)
T cd08871 10 ADFEEFKKLCDST-DGWKLKYNKNN---------VKVWTKNP----ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKT 75 (222)
T ss_pred HHHHHHHHHhcCC-CCcEEEEcCCC---------eEEEEeeC----CCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhh
Confidence 7888999999654 47987543320 23332211 22233345666655 46888999999996 56
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCCeEEEEEEeccCccCCCCCC
Q 005018 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAP 501 (719)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g~waVvDvSld~~~~~~~~~ 501 (719)
|-..+ ..++.++.+.. ...++|..+..|-| |..|||.++|..+..+ |..+|+..|++.-. .+...
T Consensus 76 Wd~~~----~e~~~ie~~d~--------~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~~ 140 (222)
T cd08871 76 WDSNM----IESFDICQLNP--------NNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPRK 140 (222)
T ss_pred hhhhh----ceeEEEEEcCC--------CCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCCC
Confidence 66652 23666666542 23788888888888 8999999999998776 88899999987432 22223
Q ss_pred CccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 005018 502 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSA 578 (719)
Q Consensus 502 ~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cerla~l~~~~ip~ 578 (719)
.++|.....+|++|++++++.|+|||+-|++..-+ +|. -+++..+.-.+-.++..|+++|+.....++.+-|.
T Consensus 141 g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 141 GFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999999999999999987765 443 34666667777899999999999999988877664
No 31
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.95 E-value=2e-08 Score=101.50 Aligned_cols=195 Identities=15% Similarity=0.192 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcC-
Q 005018 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD- 418 (719)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD- 418 (719)
+-.||..|.+|++++.. .+.-|....+.. +.++|.+.. ..+..-.-|..+.|..++.++++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~---------~i~v~~~~~----~~~~~~~~k~~~~i~~~~~~v~~~l~d~ 68 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTVK---------NITVSWKPS----TEFTGHLYRAEGIVDALPEKVIDVIIPP 68 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcCC---------CcEEEEecC----CCCCCEEEEEEEEEcCCHHHHHHHHHhc
Confidence 45788899999999987 447897743221 122222211 112222357888888899999999998
Q ss_pred ----hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhc-ccccccCceeeEEeeeceecCCeEEEEEEeccC
Q 005018 419 ----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDT 493 (719)
Q Consensus 419 ----~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv-~SPLVp~Re~~fLRyckq~~~g~waVvDvSld~ 493 (719)
+.+|... +..++.++-|... ..++|..+-- +.++|..|||.++||.++.++|.++|+-+|++.
T Consensus 69 ~~~~r~~Wd~~----~~~~~~le~id~~--------~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h 136 (206)
T cd08867 69 CGGLRLKWDKS----LKHYEVLEKISED--------LCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI 136 (206)
T ss_pred Ccccccccccc----ccceEEEEEeCCC--------eEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC
Confidence 4678755 4557777777521 2445553221 235799999999999999999999999999864
Q ss_pred ccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 005018 494 IRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 565 (719)
Q Consensus 494 ~~~~~~~~~~~~~rr~PSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~c 565 (719)
-. .+..+.++|+...++|++|++.+ ++.|+|||+-|++.--+ +| +-++++.++=+.--|+..|++|.
T Consensus 137 p~-~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 137 PE-RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CC-CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-Cc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 32 22223589999999999999886 57899999999987643 33 45677777777778999998774
No 32
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.94 E-value=4.7e-10 Score=113.90 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
..++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 3466888999999999999999999999999999999999999999999999999999997654
No 33
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.92 E-value=2e-08 Score=101.66 Aligned_cols=196 Identities=15% Similarity=0.219 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHH-HhcC
Q 005018 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVE-TLMD 418 (719)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe-~lmD 418 (719)
...+++.|++|++.+.. ++-|-...+.. +..+.|.+.. .| ..-.-|..++|...+..+++ +|.|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~--------~~i~i~~r~~----~~-~~~~~k~~~~i~~~~~~v~~~l~~d 70 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTT--------WGDVVYSRNV----PG-VGKVFRLTGVLDCPAEFLYNELVLN 70 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecC--------CCCEEEEEEc----CC-CceEEEEEEEEcCCHHHHHHHHHcC
Confidence 57889999999999954 55897744221 1123332221 11 11457888999999999876 4555
Q ss_pred h---hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcc-cccccCceeeEEeeeceecCCeEEEEEEeccCc
Q 005018 419 P---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (719)
Q Consensus 419 ~---~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~-SPLVp~Re~~fLRyckq~~~g~waVvDvSld~~ 494 (719)
. .+|-..| ..++.++.+. +...++|.-+.-+ .++|..|||.++|+.++.+ +.++|+..|++.-
T Consensus 71 ~~~~~~Wd~~~----~~~~~i~~~d--------~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~ 137 (208)
T cd08868 71 VESLPSWNPTV----LECKIIQVID--------DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHP 137 (208)
T ss_pred ccccceecCcc----cceEEEEEec--------CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCC
Confidence 4 5676662 2245555543 2234555333322 3689999999999999866 6799999998732
Q ss_pred cCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 005018 495 RETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 568 (719)
Q Consensus 495 ~~~~~~~~~~~~rr~PSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cerl 568 (719)
. .+..+.++|+...++|++|+++++ +.|+|||+-|++..-+ +|.- ++++.+.-+.-.+++.|+++|+.|
T Consensus 138 ~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~---lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 138 A-MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQY---LVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred C-CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccce---eeehhhHHHHHHHHHHHHHHHhhC
Confidence 1 122235899999999999999987 6899999999987744 4432 377778888889999999998753
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.73 E-value=1.4e-07 Score=96.28 Aligned_cols=172 Identities=16% Similarity=0.201 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCC-CCCCceeeeccceeEEechhhHHHHhcC
Q 005018 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD 418 (719)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~-~~g~~~EASR~sgvV~m~~~~LVe~lmD 418 (719)
...|+++|++|++++-+ +.-.|-.-.++. +...+ .+ ...+.+---|..|+|-.++.+|+|.+.|
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~gWk~~k~~~---------~~~v~-----~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~ 67 (204)
T cd08904 3 FKKIAQETSQEVLGYSR-DTSGWKVVKTSK---------KITVS-----WKPSRKYHGNLYRVEGIIPESPAKLIQFMYQ 67 (204)
T ss_pred HHHHHHHHHHHHHhhhh-cccCCeEEecCC---------ceEEE-----EEEcCCCCceEEEEEEEecCCHHHHHHHHhc
Confidence 35789999999999977 557897643331 11111 11 1233445678899999999999999998
Q ss_pred hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhh-cccccccCceeeEEeeeceecCCeEEEEEEeccCccCC
Q 005018 419 PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRET 497 (719)
Q Consensus 419 ~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElq-v~SPLVp~Re~~fLRyckq~~~g~waVvDvSld~~~~~ 497 (719)
.+...+-=+ .+..++.++-|.. ...+.|.-++ .+-++|-+|||..+||.++.++|.++|..+|++.-.-
T Consensus 68 ~e~r~~Wd~-~~~~~~iie~Id~--------~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~- 137 (204)
T cd08904 68 PEHRIKWDK-SLQVYKMLQRIDS--------DTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC- 137 (204)
T ss_pred cchhhhhcc-cccceeeEEEeCC--------CcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC-
Confidence 765443323 3455666666652 2245664443 4557899999999999999999999999999874321
Q ss_pred CCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccc
Q 005018 498 SGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDES 536 (719)
Q Consensus 498 ~~~~~~~~~rr~PSGclIq~~~nG--~skVtwVeH~e~d~~ 536 (719)
|..+.++|+.-.|+||+|++.+++ +|++||+-+++..-+
T Consensus 138 Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 138 PPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 222358999999999999999874 899999999776533
No 35
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.70 E-value=9.5e-09 Score=112.57 Aligned_cols=64 Identities=31% Similarity=0.510 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
..++.+|.|+.|+..|++.||+.|+.++||+...|++||+++++++.+|++||+|||++++|+.
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcc
Confidence 3455667789999999999999999999999999999999999999999999999999999755
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.60 E-value=1.1e-06 Score=89.69 Aligned_cols=193 Identities=13% Similarity=0.200 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh
Q 005018 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (719)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (719)
..+++++|+++++.+-+ ++.-|-...+.. +.+.|.+..... .| =.-|.-|+|..++.+|++.|+|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~~---------~i~v~~~~~~~~-~~---~~~k~e~~i~~s~~~~~~~l~d~ 68 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRTN---------EVAVSWRPSAEF-AG---NLYKGEGIVYATLEQVWDCLKPA 68 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcCC---------CEEEEeeecCCC-CC---cEEEEEEEecCCHHHHHHHHHhc
Confidence 36789999999999974 667897643321 233332211000 11 12678889999999999999976
Q ss_pred -----hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccc---cccCceeeEEeeeceecCCeEEEEEEec
Q 005018 420 -----NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP---LVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (719)
Q Consensus 420 -----~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SP---LVp~Re~~fLRyckq~~~g~waVvDvSl 491 (719)
.+|-..+ ..++.|+-|.. ...+.|. ..+.| +|.+|||..+|+.++.++|.++|.-.|+
T Consensus 69 ~~~~r~~W~~~~----~~~~vle~id~--------~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv 134 (208)
T cd08903 69 AGGLRVKWDQNV----KDFEVVEAISD--------DVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNV 134 (208)
T ss_pred cchhhhhhhhcc----ccEEEEEEecC--------CEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEec
Confidence 5888772 33555555551 1223333 44555 7999999999999999999988777676
Q ss_pred cCccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 005018 492 DTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 565 (719)
Q Consensus 492 d~~~~~~~~~~~~~~rr~PSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~c 565 (719)
..-. -+..+.++|+...|+|++|...++ +.|+|||+-|++.-- .+| +.++++.++=...-.+..|+++.
T Consensus 135 ~h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 135 EHPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSG-YLP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred cCCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCC-CcC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 5421 111225899999999999999964 589999998877642 354 34555444434444566665554
No 37
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.56 E-value=3.8e-08 Score=102.79 Aligned_cols=63 Identities=22% Similarity=0.429 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
+..|||+||.+...+...||++|..++.|+.+....+|++|+|....|+|||+|.|.|.||..
T Consensus 306 ~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 306 GGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred ccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 345788899999999999999999999999999999999999999999999999999998744
No 38
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.45 E-value=2.3e-06 Score=86.43 Aligned_cols=168 Identities=13% Similarity=0.243 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhcCCCCCeeeccC-CCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh-hhh
Q 005018 345 LAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP-NRW 422 (719)
Q Consensus 345 ~~Am~El~~la~~~eplWi~~~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~-~~W 422 (719)
+.+.++|++-+...+.-|.-..+ .| .+| |.|.. +.++..-+=|..++|...+.++++.|+|. .+|
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~g-i~I-----~~k~~-------~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~W 70 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDH-VEL-----AFKKV-------DDGHPLRLWRASTEVEAPPEEVLQRILRERHLW 70 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCc-EEE-----EEEeC-------CCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 46788999999988999986432 23 222 22222 22444556788888888899999877765 356
Q ss_pred hhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeece-ecCCeEEEEEEeccCccCCCCCC
Q 005018 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGAP 501 (719)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq-~~~g~waVvDvSld~~~~~~~~~ 501 (719)
-.. +.+++.++.|+. ...+.|..+..|-| |++|||..+|+++. .++|..+|.=.|++....-+ +
T Consensus 71 d~~----~~~~~vie~id~--------~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p--~ 135 (197)
T cd08869 71 DDD----LLQWKVVETLDE--------DTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP--L 135 (197)
T ss_pred chh----hheEEEEEEecC--------CcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCC--C
Confidence 655 334666666642 23577777777777 59999999998875 67889999999986311111 1
Q ss_pred CccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 005018 502 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (719)
Q Consensus 502 ~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 541 (719)
.++|+..+++|++|++..+|.|+|||+-|++.-- .+|.-
T Consensus 136 g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G-~iP~w 174 (197)
T cd08869 136 GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRG-RSPEW 174 (197)
T ss_pred CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCC-CCCce
Confidence 4899999999999999999999999999998642 34443
No 39
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.43 E-value=2.7e-06 Score=86.95 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=97.0
Q ss_pred CCceeeeccceeEEechhhHH-HHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceee
Q 005018 393 GFVTEASRETGMVIINSLALV-ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVN 471 (719)
Q Consensus 393 g~~~EASR~sgvV~m~~~~LV-e~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~ 471 (719)
+...-+-|....|--.+..++ .+|.++..|-..|-. +++++.|. +...+.|--+.-+-|+ |.|||+
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~----~~~ie~ld--------~~tdi~~y~~~~~~P~-~~RD~v 114 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQ----WKVVETLD--------KQTEVYQYVLNCMAPH-PSRDFV 114 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcce----eEEEEEeC--------CCcEEEEEEeecCCCC-CCCEEE
Confidence 344456676666666666664 466677788877443 77777765 2245566666666675 999999
Q ss_pred EEeeece-ecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc
Q 005018 472 FLRFCKQ-HAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 536 (719)
Q Consensus 472 fLRyckq-~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~ 536 (719)
.+|+-++ +++|.++|+..|++.....+ ..++|+..+=+|++|+++++|.|+||++-|++..-+
T Consensus 115 ~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 115 VLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 9999765 46999999999999764322 147999999999999999999999999999986533
No 40
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.41 E-value=1.9e-06 Score=100.45 Aligned_cols=129 Identities=17% Similarity=0.288 Sum_probs=103.3
Q ss_pred eeeccceeEEechhhHHHHhcChh----hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhh--cccccccCcee
Q 005018 397 EASRETGMVIINSLALVETLMDPN----RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREV 470 (719)
Q Consensus 397 EASR~sgvV~m~~~~LVe~lmD~~----~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElq--v~SPLVp~Re~ 470 (719)
-+=|+.|||-.++.+|.|.+|+.+ +|=.. +..++.|+.|. |...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~----~~~~~vIE~ID--------~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCS----FQYGSLVEEVD--------GHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhc----ccceEEEEEec--------CCeEEEEEEeccccccCccCccee
Confidence 567889999999999999999777 55554 45588888774 55677776664 44566777999
Q ss_pred eEEeeeceecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecC--C--CccEEEEEEeeeeccccc
Q 005018 471 NFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--N--GYSKVTWVEHAEYDESQV 538 (719)
Q Consensus 471 ~fLRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~--n--G~skVtwVeH~e~d~~~v 538 (719)
+++||-+..+||+++|+=+|+..-...+ .+.++|.+..|+||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~cPP-~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENCGP-QPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCCCC-CCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 9999999999999999999987533212 23589999999999999964 3 379999999999988864
No 41
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.37 E-value=3.4e-06 Score=86.02 Aligned_cols=192 Identities=13% Similarity=0.206 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeecc--CCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhc
Q 005018 340 FLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLM 417 (719)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lm 417 (719)
...++.+|++|++++.+ .+.-|-... +.| ..| |.+.||.. | -+-|..++|..++.+|++.|.
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g-i~v-----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l~ 69 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENG-DKV-----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSELV 69 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCC-CEE-----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHHH
Confidence 57889999999999986 666897642 223 111 23333222 1 355666789999999995554
Q ss_pred -Ch---hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccc--cccCceeeEEeeeceecCCeEEEEEEec
Q 005018 418 -DP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (719)
Q Consensus 418 -D~---~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SP--LVp~Re~~fLRyckq~~~g~waVvDvSl 491 (719)
|. .+|... +.-.+||..-.. ..-++|. ..++.| +|-.|||..+|+.++.+++. +++..|.
T Consensus 70 ~d~e~~~~W~~~-------~~~~~vl~~id~-----~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~ 135 (209)
T cd08905 70 DRMEQMGEWNPN-------VKEVKILQRIGK-----DTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMAT 135 (209)
T ss_pred hchhhhceeccc-------chHHHHHhhcCC-----CceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEee
Confidence 53 466655 344444443321 1245664 666766 79999999999999986654 4556765
Q ss_pred cCccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005018 492 DTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (719)
Q Consensus 492 d~~~~~~~~~~~~~~rr~PSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (719)
+.-. -+..+.++|.+..+.|++|+++++ |.|+|||+-|++..-+ +|. .|++..++=..-.++..|+++.+
T Consensus 136 ~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 136 HFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred cCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 4321 121225899999999999999988 9999999999987655 443 45666666666678888877754
No 42
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.28 E-value=1.6e-05 Score=81.28 Aligned_cols=196 Identities=10% Similarity=0.167 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeec-cC-CCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHH-HH
Q 005018 339 MFLELALAAMDELVKMAQTDEPLWIRS-FE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ET 415 (719)
Q Consensus 339 ~~~~lA~~Am~El~~la~~~eplWi~~-~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV-e~ 415 (719)
-....+.+||+++.++... +.-|.-. .+ .| .++|.+........| |.-++|...+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g----------i~V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNG----------DTVYTLEVPFHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC----------CEEEEeccCCCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 3567899999999999765 4579852 22 33 133322211011233 55667777888885 68
Q ss_pred hcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccc--cccCceeeEEeeeceecCCeEEEEEEeccC
Q 005018 416 LMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSIDT 493 (719)
Q Consensus 416 lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SP--LVp~Re~~fLRyckq~~~g~waVvDvSld~ 493 (719)
|.|.+...+=.+.+ ..++.|+-++. .--+.| ++-.|.+ .|..|||-.+|+.++.+++ ++++..|++.
T Consensus 69 l~D~~~~~~W~~~~-~~~~vi~~~~~--------~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 69 ILQPEKMVLWNKTV-SACQVLQRVDD--------NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred HhChhhccccCccc-hhhhheeeccC--------CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 88887555544443 23455444441 123456 5555554 6899999999999998888 5777788764
Q ss_pred ccCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005018 494 IRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (719)
Q Consensus 494 ~~~~~~~~~~~~~rr~PSGclIq~~--~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (719)
-. -+..+.++|.+..++|++|++. .+|.|+|||+-|++.--+ +| +.|++..++=..--.+..|.++.+
T Consensus 138 ~~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP---~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 138 SH-KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LP---RYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred CC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 31 1212258999999999999985 577999999999987653 33 245666555545555666655543
No 43
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.27 E-value=1.3e-05 Score=81.46 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCC-CCCCceeeeccceeEEechhhHHHHhcC
Q 005018 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD 418 (719)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~-~~g~~~EASR~sgvV~m~~~~LVe~lmD 418 (719)
...+|.++-+++++--+.++-.|-.-.+.+. -.+..+ .+-|.+---|.-|+|--.+..|++.+-+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~--------------~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~ 68 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKSKD--------------VTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRP 68 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeCCC--------------EEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhc
Confidence 3567888888899987779999976332220 111222 2244445567778888889999999999
Q ss_pred ---hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCCeEEEEEEeccCcc
Q 005018 419 ---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIR 495 (719)
Q Consensus 419 ---~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g~waVvDvSld~~~ 495 (719)
+.+|-+. |..++.|+-|.. +++-.-|.=.-.+-++|-+|||.-|||+++.++|. ..|=||++.-.
T Consensus 69 ~~~r~~Wd~~----v~~~~Iie~Id~-------dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~ 136 (202)
T cd08902 69 GPYRLDWDSL----MTSMDIIEEFEE-------NCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEE 136 (202)
T ss_pred ccchhcccch----hhheeHhhhhcC-------CcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCC
Confidence 4589876 455666666552 23222255555677799999999999999999998 77788887543
Q ss_pred CCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHH
Q 005018 496 ETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQ 564 (719)
Q Consensus 496 ~~~~~~~~~~~rr~PSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ 564 (719)
.. +.++|....|+||++.+.+|| .|+.||+-++++.-+ |=+-++++.++=..=-....|+++
T Consensus 137 ~p---pg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 137 AR---PNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred CC---CCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 21 258999999999999999988 677889999776644 334456554443333334555443
No 44
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.18 E-value=1.1e-06 Score=91.76 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHH
Q 005018 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (719)
Q Consensus 141 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (719)
|...-...|..+|..++||+..++.+||+.+||+..||-.||.|||.|+|
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDR 232 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhh
Confidence 44455678999999999999999999999999999999999999999988
No 45
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.08 E-value=3.6e-05 Score=78.54 Aligned_cols=183 Identities=15% Similarity=0.235 Sum_probs=124.0
Q ss_pred HHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHHhcChh---hhhhhcc
Q 005018 352 VKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPN---RWAEMFP 427 (719)
Q Consensus 352 ~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~lmD~~---~W~~~Fp 427 (719)
+..-+.+.+-|-...+... .++|.+.. .+...-.=|..+++. +.+..|+++|+|.+ +|...
T Consensus 17 ~~~~~~~~~~W~l~~~~~~---------i~Vy~r~~----~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-- 81 (207)
T cd08910 17 LQQPALDGAAWELLVESSG---------ISIYRLLD----EQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY-- 81 (207)
T ss_pred hcCCCCCCCCeEEEEecCC---------eEEEEecc----CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH--
Confidence 4444556677987554321 22332221 222233577778887 78999999999975 56655
Q ss_pred cccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeec-eecCC--eEEEEEEeccCccCCCCCCCcc
Q 005018 428 CMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEG--VWAVVDVSIDTIRETSGAPAFV 504 (719)
Q Consensus 428 ~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyck-q~~~g--~waVvDvSld~~~~~~~~~~~~ 504 (719)
++. .++.++. + ..++|-.+..|-| |..||+.++|-.. ...+| .|+|+..|++.- .-+....++
T Consensus 82 -~~~---~~~~~~~-------~-~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p-~~P~~~~~V 147 (207)
T cd08910 82 -VKE---LYEKECD-------G-ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSLP-QLPEKPGVI 147 (207)
T ss_pred -HHh---heeecCC-------C-CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCCC-CCCCCCCCE
Confidence 221 2333321 2 3578889999999 9999999996444 33344 689888887632 112222589
Q ss_pred ceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 005018 505 NCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 567 (719)
Q Consensus 505 ~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cer 567 (719)
|....-+|.+|++..++.|+||++-|++-- ..+|. -|++.....+...|+..|+..|..
T Consensus 148 Rv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 148 RVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred EEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHHHHHHHHhhHHHHHHHHHHHhc
Confidence 999999999999998889999999998742 23443 257777888899999999888863
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.94 E-value=0.00012 Score=74.54 Aligned_cols=200 Identities=15% Similarity=0.074 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcCh
Q 005018 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (719)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (719)
+++=+...|+|+.+..+. +.-|....+.. +.++|-+.. ++-..-+-|.-|+|..+...++++|.|.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~~---------~i~v~~r~~----~~~~~~~~k~e~~i~~~~~~~~~vl~d~ 68 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKESE---------GIRVYYKFE----PDGSLLSLRMEGEIDGPLFNLLALLNEV 68 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccCC---------CeEEEEEeC----CCCCEEEEEEEEEecCChhHeEEEEehh
Confidence 455566888999988876 55798754331 223332211 1222457788889999999999999999
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEE-eeecee-cCCeEEEEEEeccCccC-
Q 005018 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL-RFCKQH-AEGVWAVVDVSIDTIRE- 496 (719)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fL-Ryckq~-~~g~waVvDvSld~~~~- 496 (719)
+...+-+|.. ..++.++.++-. -++.|-.+-+|-| |..||+.+. +.+.++ ++|..+|+=.|++.-..
T Consensus 69 ~~~~~W~p~~-~~~~~l~~~~~~--------~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 69 ELYKTWVPFC-IRSKKVKQLGRA--------DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred hhHhhhcccc-eeeEEEeecCCc--------eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 8777777763 335555544321 2567767777777 888999975 567777 89999999999985432
Q ss_pred -------CCCCC-CccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005018 497 -------TSGAP-AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (719)
Q Consensus 497 -------~~~~~-~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (719)
-+..+ .++|.....+|.+|+++++|.++|+++-|++-.-+-||.= |++...--.+...+..|+++|+
T Consensus 139 ~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 139 LKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred ccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 12223 4789999999999999999999999999966332226653 3444444446667777777775
No 47
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.88 E-value=0.00015 Score=74.30 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhhcCCCCCeeec-cCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHhcC-hhh
Q 005018 344 ALAAMDELVKMAQTDEPLWIRS-FEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD-PNR 421 (719)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~-~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD-~~~ 421 (719)
-+..+++|++.|..--=-|+.- ...+ .|+- |.| +..|...-.=|....+.-.+..|+..|+| +.+
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~-~el~----~~k--------~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~ 77 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQ-AELS----YKK--------VSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHL 77 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCc-EEEE----Eec--------cCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHH
Confidence 4477888888886554456541 1111 1111 111 22344445666667777778888855555 557
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeec-eecCCeEEEEEEeccCccCCCCC
Q 005018 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGA 500 (719)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyck-q~~~g~waVvDvSld~~~~~~~~ 500 (719)
|-.. +..++.|+-|+. .-.+.|-.+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-. .+
T Consensus 78 Wd~~----~~e~~vIe~ld~--------~~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~-~P-- 141 (204)
T cd08908 78 WDVD----LLDSKVIEILDS--------QTEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR-AP-- 141 (204)
T ss_pred HHHH----hhheEeeEecCC--------CceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc-CC--
Confidence 8777 334677776662 11477888888988 7999999997665 478999999999987432 11
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeec
Q 005018 501 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYD 534 (719)
Q Consensus 501 ~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d 534 (719)
...+|.+.+-+|++|+++++|.|+||.+-|++--
T Consensus 142 ~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 142 VAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred cCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 2268999999999999999999999999998753
No 48
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.87 E-value=7.7e-06 Score=84.85 Aligned_cols=59 Identities=27% Similarity=0.509 Sum_probs=53.4
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
+|+|..|+..-.++|..+| ..+|||+...+++||++++++-.||-.||.|+|-+.||..
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 5566689999999999999 4589999999999999999999999999999999998643
No 49
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.82 E-value=0.00024 Score=70.65 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=104.1
Q ss_pred eeccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeec
Q 005018 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (719)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyck 477 (719)
.-|.+++|-.++.++.+++.|.+.|.+-=|. +...+||.....+ -.++|..+..+=| |..|||.++|...
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~----~~~~~vie~~~~~-----~~i~~~~~~~p~p-vs~Rdfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPN----CKESRVLKRTDDN-----ERSVYTVIDLPWP-VKDRDMVLRSTTE 111 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh----cceEEEeecCCCC-----cEEEEEEEecccc-cCCceEEEEEEEE
Confidence 4588888999999999999999988766555 3444555533211 2445555555544 7899999876543
Q ss_pred ee-cCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHH
Q 005018 478 QH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQR 556 (719)
Q Consensus 478 q~-~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~r 556 (719)
.. ++|..+|.=.|.+... +....++|.+.+-+|+.|++.++|.|+||++-|++..-+...-+.+.+ +.=+..+
T Consensus 112 ~~~~~~~~~i~~~s~~~~~--P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~----~~~~~~~ 185 (195)
T cd08876 112 QDADDGSVTITLEAAPEAL--PEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAF----AKDAPYN 185 (195)
T ss_pred EcCCCCEEEEEeecCCccC--CCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHH----HHHHHHH
Confidence 33 3677766666665421 211247899999999999999999999999999888644333344444 3345668
Q ss_pred HHHHHHHHH
Q 005018 557 WVATLQRQC 565 (719)
Q Consensus 557 WlatLqR~c 565 (719)
++++|+++|
T Consensus 186 ~l~~l~~~~ 194 (195)
T cd08876 186 TLENLRKQL 194 (195)
T ss_pred HHHHHHHhh
Confidence 888887765
No 50
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.73 E-value=0.00021 Score=73.23 Aligned_cols=130 Identities=17% Similarity=0.203 Sum_probs=90.7
Q ss_pred CCCCceeeeccceeEEechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhccccc-cc
Q 005018 391 PNGFVTEASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPL-VP 466 (719)
Q Consensus 391 ~~g~~~EASR~sgvV~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPL-Vp 466 (719)
..+|.. -++|...+.+|++.|.|.. +|-.+ ..+.+||..-. ....++|.....|=|+ ++
T Consensus 44 ~~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~-------~~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~~ 106 (205)
T cd08874 44 YHGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTM-------IKTARIHKTFT-----EDICLVYLVHETPLCLLKQ 106 (205)
T ss_pred cceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHh-------hhheeeeeecC-----CCeEEEEEEecCCCCCCCC
Confidence 346664 3477888999999999876 56665 55566666332 2335677666655555 39
Q ss_pred CceeeEEeeeceecCCeEEEEEEeccC-ccCCCCCCCccceeecCCcceEeec---CCCccEEEEEEeeeecccccc
Q 005018 467 VREVNFLRFCKQHAEGVWAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDM---PNGYSKVTWVEHAEYDESQVH 539 (719)
Q Consensus 467 ~Re~~fLRyckq~~~g~waVvDvSld~-~~~~~~~~~~~~~rr~PSGclIq~~---~nG~skVtwVeH~e~d~~~vh 539 (719)
.|||..+|-....+++.. |.=.|++. ..+.. ...++|.+.+++|++|+++ ++|.|+||.+-|++---..||
T Consensus 107 ~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~-~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 107 PRDFCCLQVEAKEGELSV-VACQSVYDKSMPEP-GRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred CCeEEEEEEEEECCCcEE-EEEEecccccCCCC-CCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 999999995555555544 66677765 22211 1147999999999999999 999999999999987533344
No 51
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.68 E-value=1.1e-05 Score=61.89 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=29.0
Q ss_pred hCCCCChHHHHHHHHHhcccccceeccccchhhH
Q 005018 155 ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (719)
Q Consensus 155 ~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK 188 (719)
.+|||+..++.+||+++||+..||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999999865
No 52
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.58 E-value=0.00031 Score=71.77 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhhcCCCCCeeeccCC-CcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHHhcChhh
Q 005018 344 ALAAMDELVKMAQTDEPLWIRSFEG-SGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNR 421 (719)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~~~~-gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~lmD~~~ 421 (719)
-+..+++|++-+....=-|+...+. + .|+- .|.-++ |...--=|.+.-|- ..+.-|-++|.|+..
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~-vev~-----~kk~~d-------~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~ 77 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDN-TELA-----CKKVGD-------GHPLRLWKVSTEVEAPPSVVLQRVLRERHL 77 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCC-cEEE-----EEeCCC-------CCceEEEEEEEEecCCCHHHHHHHhhchhh
Confidence 4478889999998777789873322 2 2221 111011 11111112222222 244556699999999
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeec-eecCCeEEEEEEeccCccCCCCC
Q 005018 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGA 500 (719)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyck-q~~~g~waVvDvSld~~~~~~~~ 500 (719)
|=+.+ -+.++|+.|.-- +...|. -+..| +.+|.|+|.+||.-+ .+..|.-+|+.+|++....-+ .
T Consensus 78 WD~~m----~e~~~Ie~Ld~n-----~dI~yY---~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp-~ 143 (205)
T cd08907 78 WDEDL----LHSQVIEALENN-----TEVYHY---VTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQL-E 143 (205)
T ss_pred hhHHH----HhhhhheeecCC-----CEEEEE---EecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCC-C
Confidence 98873 458888888621 112222 12222 568999999999864 467789999999998654332 1
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeeccc
Q 005018 501 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 536 (719)
Q Consensus 501 ~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~ 536 (719)
.-+|+--+=|||||++++.|.|+||-|-|++..-+
T Consensus 144 -~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 144 -AGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred -CCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 23899999999999999999999999999987544
No 53
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.54 E-value=7.2e-05 Score=76.10 Aligned_cols=65 Identities=29% Similarity=0.604 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
...+.++.|+.++..|+..++..|...++|+...+.+|+..+|++++.|++||||+|.+.|+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 34566778889999999999999999999999999999999999999999999999999997654
No 54
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.48 E-value=8.8e-05 Score=84.14 Aligned_cols=61 Identities=28% Similarity=0.307 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (719)
...+.||.|.+||..|...|.++|+++++|+....+.|+.+|+|...-|..||-|-|.|.+
T Consensus 416 ~~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 416 KMLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred ccccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 3445678899999999999999999999999999999999999999999999999888753
No 55
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.44 E-value=0.0021 Score=65.53 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=115.3
Q ss_pred eeeccceeE-EechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeE
Q 005018 397 EASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 472 (719)
Q Consensus 397 EASR~sgvV-~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~f 472 (719)
-.=|..+++ .+.+..|.+.|+|.+ +|-.. +...++|.... +-...++|-.+..|-|+ -.||+.+
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-------~~~~~~le~~~----~~~~~i~y~~~~~P~P~-s~RD~V~ 117 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET-------VIEHETLEEDE----KSGTEIVRWVKKFPFPL-SDREYVI 117 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh-------eeeEEEEEecC----CCCcEEEEEEEECCCcC-CCceEEE
Confidence 456777777 569999999999975 56655 33344443211 10147899999999988 9999999
Q ss_pred EeeeceecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeeccccccccchhhhccch
Q 005018 473 LRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGM 550 (719)
Q Consensus 473 LRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~--~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~ 550 (719)
.|-..+..+|..+|+=-|++.-. .+.. .++|.+..=||++|++. .+|.++|+++-|.+- .-.+|. -|++...
T Consensus 118 ~r~~~~~~~~~~~i~~~sv~~~~-~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~ 191 (209)
T cd08870 118 ARRLWESDDRSYVCVTKGVPYPS-VPRS-GRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAV 191 (209)
T ss_pred EEEEEEcCCCEEEEEEeCCcCCC-CCCC-CcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHHH
Confidence 98777777999988888877521 1111 37999999999999999 789999999999863 224554 4688889
Q ss_pred hHHHHHHHHHHHHHHHH
Q 005018 551 GFGAQRWVATLQRQCEC 567 (719)
Q Consensus 551 afGA~rWlatLqR~cer 567 (719)
..|+..||..|.+.|..
T Consensus 192 ~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 192 KRGMPGFLKKLENALRK 208 (209)
T ss_pred HhhhHHHHHHHHHHHhc
Confidence 99999999999988853
No 56
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.35 E-value=0.0052 Score=64.24 Aligned_cols=195 Identities=13% Similarity=0.191 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhcC--CCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHHhcChhh
Q 005018 345 LAAMDELVKMAQT--DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNR 421 (719)
Q Consensus 345 ~~Am~El~~la~~--~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~lmD~~~ 421 (719)
.+-.+|.+++|+. ++.-|--..+.+. .++|.+... ..|+....=|+.++|. ..+..+.+.|.|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~~g---------ikVy~r~~~--~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEEGE---------MKVYRREVE--EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeCCc---------eEEEEEECC--CCCceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 3566789999865 5557976443321 233433211 1144445678888888 889999999999874
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecC-------CeEEEEEEeccCc
Q 005018 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE-------GVWAVVDVSIDTI 494 (719)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~-------g~waVvDvSld~~ 494 (719)
..+=... +..++.++-++. ...+.|..+-.|=| +-.|||.|+|+-++.++ +.|+|+..|++.-
T Consensus 78 r~~Wd~~-~~~~~vie~l~~--------~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~ 147 (235)
T cd08872 78 RMDWETT-LENFHVVETLSQ--------DTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHD 147 (235)
T ss_pred HHHHHhh-hheeEEEEecCC--------CCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccCc
Confidence 4433222 222444444442 22466777778888 69999999999998876 7899999998743
Q ss_pred cCCCCCCCccceee---cCCcceEee------c--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 005018 495 RETSGAPAFVNCRR---LPSGCVVQD------M--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 563 (719)
Q Consensus 495 ~~~~~~~~~~~~rr---~PSGclIq~------~--~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR 563 (719)
. .|..+.++|.+. +=.|.+|.+ + .||.|+||++-|++---+.-. .+++.....++-.+|..|--
T Consensus 148 ~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~----wvvn~~~k~~~P~~l~~~~~ 222 (235)
T cd08872 148 S-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPA----SVLRAVYKREYPKFLKRFTS 222 (235)
T ss_pred c-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccH----HHHHHHHHhhchHHHHHHHH
Confidence 2 121224677664 222333332 1 588999999999975444322 34555566677777777755
Q ss_pred HH
Q 005018 564 QC 565 (719)
Q Consensus 564 ~c 565 (719)
++
T Consensus 223 ~~ 224 (235)
T cd08872 223 YV 224 (235)
T ss_pred HH
Confidence 54
No 57
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.22 E-value=0.004 Score=63.52 Aligned_cols=152 Identities=11% Similarity=0.123 Sum_probs=110.0
Q ss_pred eeccceeE-EechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEE
Q 005018 398 ASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 473 (719)
Q Consensus 398 ASR~sgvV-~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fL 473 (719)
.=|..+++ ...+..+++.|+|.+ +|-.. +...++|.-... -...++|..+..|-|+ -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~-------~~~~~~le~~~~----~~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT-------AVELEVVDEDPE----TGSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh-------heeEEEEEccCC----CCCEEEEEEEECCCCC-CCccEEEE
Confidence 45665544 788999999999986 56655 344455553211 1236889999999996 89999998
Q ss_pred eeeceec-CCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecC---CCccEEEEEEeeeeccc-cccccchhhhcc
Q 005018 474 RFCKQHA-EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP---NGYSKVTWVEHAEYDES-QVHQLYKPLIIS 548 (719)
Q Consensus 474 Ryckq~~-~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~---nG~skVtwVeH~e~d~~-~vh~lyrpl~~S 548 (719)
|-..+.. +|.++|+-.|++.-. .+....++|.....+|++|++.. ++.|+|+++-|. |+. .+|.- |++.
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN~ 187 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITSW 187 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHHH
Confidence 8876665 567888888887421 11122479999999999999983 667999988885 666 36653 4666
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 005018 549 GMGFGAQRWVATLQRQCEC 567 (719)
Q Consensus 549 g~afGA~rWlatLqR~cer 567 (719)
-...++-.||..|++-|..
T Consensus 188 ~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 188 VAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHhhccHHHHHHHHHHhc
Confidence 6777888999999888853
No 58
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.82 E-value=0.0083 Score=62.89 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=85.7
Q ss_pred CCceeeeccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeE
Q 005018 393 GFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 472 (719)
Q Consensus 393 g~~~EASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~f 472 (719)
.|++|+. |...+.+|++.|.|.+...+=.+- +...++|..-. ....++|..+..|. -+..|||.+
T Consensus 78 ~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~~----~~e~evI~~id-----~d~~iyy~~~p~Pw-Pvk~RDfV~ 142 (235)
T cd08873 78 SFCVELK-----VQTCASDAFDLLSDPFKRPEWDPH----GRSCEEVKRVG-----EDDGIYHTTMPSLT-SEKPNDFVL 142 (235)
T ss_pred EEEEEEE-----ecCCHHHHHHHHhCcchhhhhhhc----ccEEEEEEEeC-----CCcEEEEEEcCCCC-CCCCceEEE
Confidence 4555554 788999999999998754443332 45555555221 12345665555544 488999999
Q ss_pred EeeeceecCC--eEEEEEEecc-CccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeee
Q 005018 473 LRFCKQHAEG--VWAVVDVSID-TIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAE 532 (719)
Q Consensus 473 LRyckq~~~g--~waVvDvSld-~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e 532 (719)
+|+-++..++ ..+|.=.|+. ...+ ..+.++|.+.+=.|++|++..+|.|+||.+-|++
T Consensus 143 ~~s~~~~~~~~~~~~I~~~SV~h~~~P--p~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 143 LVSRRKPATDGDPYKVAFRSVTLPRVP--QTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred EEEEEeccCCCCeEEEEEeeeecccCC--CCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 9999984443 3777666655 2211 1125899999999999999999999999999986
No 59
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.40 E-value=0.0022 Score=79.03 Aligned_cols=62 Identities=19% Similarity=0.338 Sum_probs=57.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 133 kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
.++++|++++..|+..+..+|....||...+.+.|.+.++++++.|++||||-|+|.|+...
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 35778899999999999999999999999999999999999999999999999999997665
No 60
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.19 E-value=0.041 Score=57.93 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=81.7
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccc--cccCceeeEEeeecee
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQH 479 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SP--LVp~Re~~fLRyckq~ 479 (719)
-++|...+..|++.|.|.+...+=.+. +...+||...... . . +|-.. -+.+ -|..|||-.++...+.
T Consensus 86 e~~vd~s~e~v~~lL~D~~~r~~Wd~~----~~e~~vIe~id~~----~-~-vY~v~-~~p~~~pvs~RDfV~~~s~~~~ 154 (240)
T cd08913 86 EMVVHVDAAQAFLLLSDLRRRPEWDKH----YRSCELVQQVDED----D-A-IYHVT-SPSLSGHGKPQDFVILASRRKP 154 (240)
T ss_pred EEEEcCCHHHHHHHHhChhhhhhhHhh----ccEEEEEEecCCC----c-E-EEEEe-cCCCCCCCCCCeEEEEEEEEec
Confidence 368888999999999998755544443 3444444433221 1 1 22211 1122 5889999999888665
Q ss_pred cC-C-eEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 005018 480 AE-G-VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (719)
Q Consensus 480 ~~-g-~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 541 (719)
++ | .++|+=.|+..-. -|..+.++|.+.+..|++|++..+|.|+||++-|++ +..+|..
T Consensus 155 ~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 155 CDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred cCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHH
Confidence 43 4 4555555543211 122225899999999999999999999999999987 2345543
No 61
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.01 E-value=0.039 Score=57.92 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=87.4
Q ss_pred eeccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhccc-ccccCceeeEEeee
Q 005018 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLS-PLVPVREVNFLRFC 476 (719)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~S-PLVp~Re~~fLRyc 476 (719)
+-|....|...+..|++.|.|.+...+=.+- +...+||..-.... . +|...-.|- | +..|||-++|--
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~----~~e~~vI~qld~~~-----~-vY~~~~pPw~P-vk~RD~V~~~s~ 147 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH----FLSCEVIDWVSEDD-----Q-IYHITCPIVNN-DKPKDLVVLVSR 147 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHh----hceEEEEEEeCCCc-----C-EEEEecCCCCC-CCCceEEEEEEE
Confidence 3344447788999999999998755544333 34444444322211 1 354333332 3 489999998776
Q ss_pred ceec-CCe-EEEEEEeccC-ccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 005018 477 KQHA-EGV-WAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (719)
Q Consensus 477 kq~~-~g~-waVvDvSld~-~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 541 (719)
.+.. +|. ++|.=.|+.. ..+. .+.++|.+.+=+|++|++.++|.|+||.+-|++ +..+|..
T Consensus 148 ~~~~~dg~~~~I~~~SVp~~~~Pp--~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~ 211 (236)
T cd08914 148 RKPLKDGNTYVVAVKSVILPSVPP--SPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYF 211 (236)
T ss_pred EecCCCCCEEEEEEeecccccCCC--CCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccchhe
Confidence 6666 885 8888888765 2221 124899999899999999999999999999995 4556544
No 62
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=94.94 E-value=0.021 Score=62.43 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=51.2
Q ss_pred CCCCCCCCCHHHHHHHHHHh-h--hCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 134 RKKRYHRHTPQQIQELESLF-K--ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 134 kkr~RtrfT~~Ql~~LE~~F-~--~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
++|++..+......+|+.+. + ..+||+..++..|++++||+..||..||-|.|-|..+-...
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~~ 303 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMIE 303 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchHH
Confidence 45556678999999999864 3 35799999999999999999999999999999886654443
No 63
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=94.58 E-value=0.015 Score=48.07 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchh
Q 005018 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (719)
Q Consensus 145 Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (719)
.++-|++.|...+++...+...|..+.+|+..||+.||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 356799999999999999999999999999999999996553
No 64
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=92.83 E-value=0.5 Score=44.41 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=27.1
Q ss_pred CCCCHHHHH-HHHHHhhhCCCCChHHHHHHHHHhcccccceecccc
Q 005018 139 HRHTPQQIQ-ELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (719)
Q Consensus 139 trfT~~Ql~-~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQ 183 (719)
.+||.++.. .+...+. +. ....++|+++|+++.+|..|.+
T Consensus 11 r~ys~EfK~~aV~~~~~-~g----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFE-PG----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCHHHHHHHHHHHHc-CC----CCHHHHHHHHCcCHHHHHHHHH
Confidence 457776644 3333343 22 3467889999999999999943
No 65
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=90.49 E-value=1.2 Score=42.65 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHh-cccccceeccccchhhHHHHHHHHhhhhHHHHHhHHHHHhhHhHHh
Q 005018 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRL-CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~L-gLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e 217 (719)
.+|+.+++..| . -.+|=++| |++...|-.|=|.||+-.-+-.........-++.+.|..++..|..
T Consensus 22 d~lsDd~Lvsm------------S-VReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSM------------S-VRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHh------------h-HHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888887765 1 22344444 8899999999999887644433333333333444555556555554
Q ss_pred hhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHh
Q 005018 218 AMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (719)
Q Consensus 218 ~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~ 258 (719)
|..+|+.||++++.|++-..
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 45578888888888876543
No 66
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=90.21 E-value=0.51 Score=46.89 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=45.9
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005018 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 677 (719)
|++.+|... . ..++|+|.+++..+ . .+..-.++..++.+|+.||+++.|..+|.+||--
T Consensus 14 ~~~~~W~~~-~--~~~~v~v~~~~~~~---~---~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~ 72 (195)
T cd08876 14 APDGDWQLV-K--DKDGIKVYTRDVEG---S---PLKEFKAVAEVDASIEAFLALLRDTESYPQWMPN 72 (195)
T ss_pred CCCCCCEEE-e--cCCCeEEEEEECCC---C---CeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh
Confidence 455569977 3 35799999998632 1 2445567777999999999999999999999964
No 67
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=89.69 E-value=0.6 Score=47.92 Aligned_cols=59 Identities=22% Similarity=0.434 Sum_probs=44.0
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhhc
Q 005018 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILS 678 (719)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls 678 (719)
..++|... . ..++|+|.+|+..+ +.+...++..-++ +||+.+|++|.|...|.+||..+
T Consensus 21 ~~~~W~~~-~--~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~ 80 (222)
T cd08871 21 STDGWKLK-Y--NKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNM 80 (222)
T ss_pred CCCCcEEE-E--cCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhh
Confidence 34589977 3 35679999988632 2334445556566 99999999999999999999754
No 68
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=89.33 E-value=0.69 Score=47.65 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=43.4
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhc
Q 005018 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 678 (719)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 678 (719)
-...+|..- ...++|+|.++.. +|...|.. + .+. +++||+.||++|.|...|.+||...
T Consensus 19 ~~~~gW~l~---~~~~gI~Vy~k~~---~~~~~~~~-g-e~~--v~as~~~v~~ll~D~~~r~~Wd~~~ 77 (205)
T cd08874 19 QATAGWSYQ---CLEKDVVIYYKVF---NGTYHGFL-G-AGV--IKAPLATVWKAVKDPRTRFLYDTMI 77 (205)
T ss_pred hccCCcEEE---ecCCCEEEEEecC---CCCcceEE-E-EEE--EcCCHHHHHHHHhCcchhhhhHHhh
Confidence 456789533 2468999999864 34444444 3 343 3999999999999999999999754
No 69
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=89.18 E-value=0.65 Score=48.94 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=47.7
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCCCchhhhhhh
Q 005018 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 689 (719)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~lsnG~~vqE~a~I 689 (719)
...+|..- ...++|+|.++.+ . .+++-..=.-+++|++.|||+|.|...|.+||. +...++.+.+|
T Consensus 53 ~~~~W~l~---~~k~gIkVytr~~---s-----~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA---SSTTSVTLYTLEQ---D-----GVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE---EcCCCEEEEEecC---C-----CceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46789865 3468999999973 1 234444444489999999999999999999997 33444455544
No 70
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=88.72 E-value=4.8 Score=38.97 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=73.7
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhh--hcccccccCceeeEEeeece
Q 005018 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAEL--QVLSPLVPVREVNFLRFCKQ 478 (719)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aEl--qv~SPLVp~Re~~fLRyckq 478 (719)
.+-+|.-.+..+-+++-|..+|-+.||. +.-++|++.|..+- | +.+ +...+ ..+.-|.=|.+.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~----~~~~~~l~~~~~~~--~------~r~~i~~~~~--g~~~~w~s~~~~- 69 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSE----YAEAEVLEEDGDTV--R------FRLTMHPDAN--GTVWSWVSERTL- 69 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccc----eEEEEEEEecCCeE--E------EEEEEEeccC--CEEEEEEEEEEe-
Confidence 3456666888999999999999999999 56777887543221 1 222 22222 122222224332
Q ss_pred ecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHH
Q 005018 479 HAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWV 558 (719)
Q Consensus 479 ~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWl 558 (719)
....|-|.=..+.. .+ + ..+=--..+++.++| |+|++..+.+...-. .+.-+++..-.--.-..=+
T Consensus 70 -~~~~~~i~~~~~~~---~p----~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l 135 (146)
T cd08860 70 -DPVNRTVRARRVET---GP----F---AYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQM 135 (146)
T ss_pred -cCCCcEEEEEEecC---CC----c---ceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHH
Confidence 33334332111111 11 1 122223446888887 999999998865311 2222233222222334457
Q ss_pred HHHHHHHHH
Q 005018 559 ATLQRQCEC 567 (719)
Q Consensus 559 atLqR~cer 567 (719)
++|.+.+|+
T Consensus 136 ~~Lk~~aE~ 144 (146)
T cd08860 136 ARIKKKIEA 144 (146)
T ss_pred HHHHHHhhh
Confidence 777777775
No 71
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=88.35 E-value=0.73 Score=47.46 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=46.3
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhc
Q 005018 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 678 (719)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 678 (719)
.++|... . .++++.|.++++.+..|. -..+.--+|.+|+.||+||.|..+|.+||-.+
T Consensus 21 ~~gWk~~-k--~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 21 TSGWKVV-K--TSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred ccCCeEE-e--cCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhcccc
Confidence 4899977 3 458999999998665552 24566678999999999999999999999744
No 72
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=87.77 E-value=1 Score=46.00 Aligned_cols=56 Identities=21% Similarity=0.471 Sum_probs=40.9
Q ss_pred CCceeccCCCCCCc----eEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhh
Q 005018 613 HKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 613 ~~W~~l~~~~~~~d----Vrv~~r~s~~~~G~P~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~l 677 (719)
.+|... .. .++ |+|-.|+. +|. | +.--.+...++ +||+.|+++|.|...|.+||..
T Consensus 22 ~~W~~~-~~--k~~~~~~i~vy~r~~---~~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 82 (209)
T cd08870 22 QAWQQV-MD--KSTPDMSYQAWRRKP---KGT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET 82 (209)
T ss_pred CcceEh-hh--ccCCCceEEEEeccc---CCC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh
Confidence 689987 43 344 88877765 222 2 23355566776 8999999999999999999964
No 73
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=87.50 E-value=4.7 Score=37.08 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=63.1
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecC
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~ 481 (719)
+-.+...+.++.++|.|.+.|.+-+|.+. .+++++.+ ...+ +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~~~-------~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIGPN-------EYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchh----hccccCCC-------eEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 33466678899999999999999999864 35665421 1111 111112 232 2232223455443344
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 005018 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 546 (719)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~ 546 (719)
..+++....... .. + ...=--+-|.+. +|.++|||.-+++..- .+..|..+++
T Consensus 72 ~~~~~~~~~~~~---~~----~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 72 ESYTITGEGKGG---AG----F---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred cEEEEEEEEcCC---Cc----e---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 454444221110 00 1 111122346777 5679999999999653 3444444444
No 74
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=87.11 E-value=1 Score=47.53 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=46.2
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005018 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 677 (719)
...++|..- ...++|+|.++. |.. +++-..-+-+++|++.||++|.|...|.+||..
T Consensus 53 a~~~~W~l~---~dkdgIkVytr~-----~s~---~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVT---STVEKIKIYTLE-----EHD---VLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEE---EccCCEEEEEec-----CCC---cEEEEEEEEEcCCHHHHHHHHhChhhhchhHHh
Confidence 346899965 346899999984 222 577788888899999999999999999999964
No 75
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=86.38 E-value=7.6 Score=36.08 Aligned_cols=132 Identities=14% Similarity=0.160 Sum_probs=73.0
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCce-eeEEeeecee
Q 005018 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVRE-VNFLRFCKQH 479 (719)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re-~~fLRyckq~ 479 (719)
.+-.|..++..+-++|.|.+.|.+-+|.+ ...+++..+. ++.. ++.. .|. +.+++|+..
T Consensus 3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~~----~~~~--~~~~---------~~~~~~~~~~~~~- 62 (144)
T cd08866 3 ARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERNG----NRVV--LEQT---------GKQGILFFKFEAR- 62 (144)
T ss_pred EEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcCC----CEEE--EEEe---------eeEEEEeeeeeEE-
Confidence 35566668889999999999999999994 5666675422 1211 1110 111 223333322
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeec----C--Ccc-eEeecCC-CccEEEEEEeeeeccccccccchhhhccchh
Q 005018 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRL----P--SGC-VVQDMPN-GYSKVTWVEHAEYDESQVHQLYKPLIISGMG 551 (719)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~rr~----P--SGc-lIq~~~n-G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~a 551 (719)
++.++.... +.. ..++++.. + .|. -+++.++ |.++|+|--|++... . ++-++++.-+-
T Consensus 63 -----v~~~~~~~~--~~~---~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~---~p~~l~~~~~~ 128 (144)
T cd08866 63 -----VVLELRERE--EFP---RELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-F---APVFLVEFVLR 128 (144)
T ss_pred -----EEEEEEEec--CCC---ceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-C---CCHHHHHHHHH
Confidence 222221100 000 01111111 0 122 3577887 789999987777653 2 33366766666
Q ss_pred HHHHHHHHHHHHHHH
Q 005018 552 FGAQRWVATLQRQCE 566 (719)
Q Consensus 552 fGA~rWlatLqR~ce 566 (719)
=+..+-++.|+++||
T Consensus 129 ~~~~~~l~~lr~~ae 143 (144)
T cd08866 129 QDLPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHHHh
Confidence 667788888888876
No 76
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=85.89 E-value=3.5 Score=42.59 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=69.9
Q ss_pred cceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEee-eceecC-CeEEEEEEeccCccCCCCCCCccceeec
Q 005018 432 RTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRF-CKQHAE-GVWAVVDVSIDTIRETSGAPAFVNCRRL 509 (719)
Q Consensus 432 ~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRy-ckq~~~-g~waVvDvSld~~~~~~~~~~~~~~rr~ 509 (719)
.++.++++..+. ++...+.|.+..+|-| +..|+|..|.. +...+. ..++|+.++++.-.-......++|.+ -
T Consensus 76 ~~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y 149 (208)
T cd08864 76 DLEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-Y 149 (208)
T ss_pred eeEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-E
Confidence 345555554332 2356788888888888 89999999999 666652 67899999987432110112467877 6
Q ss_pred CCcceEeecCC---CccEEEEEEeeeeccc-cccc
Q 005018 510 PSGCVVQDMPN---GYSKVTWVEHAEYDES-QVHQ 540 (719)
Q Consensus 510 PSGclIq~~~n---G~skVtwVeH~e~d~~-~vh~ 540 (719)
=||-.|+..|. +-.+|+|+==...|+. .||.
T Consensus 150 ~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 150 ASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred EEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 79999998885 4789999994444554 2543
No 77
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.74 E-value=1.6 Score=34.62 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=29.8
Q ss_pred HHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhH
Q 005018 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (719)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~ 260 (719)
+.+.+...|++.++.|++++.+|. .||..|+.|+.++...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~----------------------------~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLK----------------------------KENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHh
Confidence 456778889999999998877665 4777777777776543
No 78
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=85.62 E-value=0.56 Score=55.68 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=43.2
Q ss_pred HHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 146 l~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
+..|...|..|..|+..+...+|.+.||+.+.||.||+++++....-
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 77888999999999999999999999999999999999998876643
No 79
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=85.52 E-value=1.1 Score=45.89 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=45.0
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhh
Q 005018 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~l 677 (719)
-.+.+|... . ..++|+|-+|.. +|. | +.--++...++ ++|+.|+++|.|...|.+||..
T Consensus 22 ~~~~~W~l~-~--~~~~i~Vy~r~~---~~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 81 (207)
T cd08910 22 LDGAAWELL-V--ESSGISIYRLLD---EQS--G-LYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY 81 (207)
T ss_pred CCCCCeEEE-E--ecCCeEEEEecc---CCC--C-cEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH
Confidence 344579977 3 357899998875 222 2 33566677788 8999999999999999999974
No 80
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=85.42 E-value=1.6 Score=45.19 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=47.3
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhhcCCCchhhhhh
Q 005018 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAH 688 (719)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~lsnG~~vqE~a~ 688 (719)
....+|... ...++|.|.++|..| |.|.-++.| |+=+| +|.+.|+|.|+| |..||. .|.|-..
T Consensus 24 ek~kgW~~~---~~~~~vev~~kk~~d--~~~l~lwk~---s~ei~~~p~~vl~rvL~d---R~~WD~-----~m~e~~~ 87 (205)
T cd08907 24 ERFKGWHSA---PGPDNTELACKKVGD--GHPLRLWKV---STEVEAPPSVVLQRVLRE---RHLWDE-----DLLHSQV 87 (205)
T ss_pred hccCCceee---cCCCCcEEEEEeCCC--CCceEEEEE---EEEecCCCHHHHHHHhhc---hhhhhH-----HHHhhhh
Confidence 445689976 236789999999754 667656654 44458 999999999999 999994 4454444
Q ss_pred hc
Q 005018 689 IA 690 (719)
Q Consensus 689 Ia 690 (719)
|.
T Consensus 88 Ie 89 (205)
T cd08907 88 IE 89 (205)
T ss_pred he
Confidence 43
No 81
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=85.30 E-value=5.6 Score=41.95 Aligned_cols=60 Identities=30% Similarity=0.360 Sum_probs=36.9
Q ss_pred cchhhHHHHHHHHh--hhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHH
Q 005018 183 QNRRTQMKTQLERH--ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (719)
Q Consensus 183 QNRRaK~Kk~~~r~--e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r 256 (719)
|+-|-|.|.+..+. +-..|..+|++|+.||++|++..++.. .+.+.|+.+-..|++||..
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~--------------~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLL--------------AKNHELDSELELLRQELAE 143 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHh
Confidence 55566665554443 445678889999999999988665321 2444555555555555543
No 82
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=84.58 E-value=1.4 Score=45.21 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=45.2
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhcc--ccchhhhhhcCC
Q 005018 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDE--RLRSEWDILSNG 680 (719)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde--~~R~eWd~lsnG 680 (719)
..++|... . ..++|+|.+|++...+|.. -++-.-+|++++.||+||.|. ..|.+||..+..
T Consensus 20 ~~~~W~~~-~--~~~~i~v~~~~~~~~~~~~------~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~ 82 (208)
T cd08903 20 DESGWKTC-R--RTNEVAVSWRPSAEFAGNL------YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD 82 (208)
T ss_pred cccCCEEE-E--cCCCEEEEeeecCCCCCcE------EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc
Confidence 56789977 4 3479999999986656532 344555699999999999864 478999975433
No 83
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=83.76 E-value=1.9 Score=44.57 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=43.4
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCC
Q 005018 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNG 680 (719)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~lsnG 680 (719)
...+|..- .. .+||.|..+++...+|.- -= +---++.-|+.|+||+.+..+|.+||-..-.
T Consensus 21 ~~~~Wkl~-k~--~~~~~v~~k~~~ef~gkl----~R--~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~ 81 (202)
T cd08902 21 LEEEWRVA-KK--SKDVTVWRKPSEEFGGYL----YK--AQGVVEDVYNRIVDHIRPGPYRLDWDSLMTS 81 (202)
T ss_pred cccCcEEE-Ee--CCCEEEEEecCCcCCCce----EE--EEEEecCCHHHHHHHHhcccchhcccchhhh
Confidence 56789966 43 389999999886555532 11 1111278889999999999999999965433
No 84
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=83.67 E-value=1.6 Score=44.62 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=42.1
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeecc-ccChhHHHHhhhccccchhhhhhc
Q 005018 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWL-PVSPQRLFNFLRDERLRSEWDILS 678 (719)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wL-pv~p~~vf~FLrde~~R~eWd~ls 678 (719)
-..+|... . ..++|+|-.|... |. |+. --.+...+ .+|++.+|++|.|...|.+||...
T Consensus 19 ~~~~W~l~-~--~~~~i~Vy~r~~~---~s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~ 78 (207)
T cd08911 19 EPDGWEPF-I--EKKDMLVWRREHP---GT--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA 78 (207)
T ss_pred cCCCcEEE-E--EcCceEEEEeccC---CC--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh
Confidence 34569877 3 3567999888763 22 222 34443445 699999999999999999999643
No 85
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.66 E-value=4.1 Score=36.09 Aligned_cols=61 Identities=30% Similarity=0.438 Sum_probs=44.3
Q ss_pred HHHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH----HHhhHhhhh
Q 005018 190 KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGKF 264 (719)
Q Consensus 190 Kk~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~----r~~~~~~~~ 264 (719)
|-++.-..-..|+-+.+.|+.+|..+.+.... .......|..||..||+|.. |++++.+|+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~--------------~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN--------------AQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566678888999999999998887652 11234569999999999974 677776653
No 86
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=83.22 E-value=1.8 Score=45.69 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=42.5
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005018 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 677 (719)
...++|..- . ..++|+|.++.. +. +++-..=+-+++|++.||++|.|...|.+||..
T Consensus 56 ~~~~~W~l~-~--~~~gI~Vyt~~~-----s~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLS-S--EKNQVRLYTLEE-----DK---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEE-E--ccCCEEEEEEeC-----CC---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhh
Confidence 456689965 3 358999999653 11 123345567799999999999999999999964
No 87
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=83.21 E-value=12 Score=34.17 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=71.5
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceec
Q 005018 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (719)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~ 480 (719)
.+..|...+.++.+.|.|.+.|.+.+|.+ ..++++..+.. |.-...+ +.+ ...+.++.+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~~----~~~~~~~--~~~--~~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDND----GRPEMVR--IGV--GAYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCCC----CCEEEEE--EEE--eeeeEEEEEEEEEEEcC-
Confidence 34567778899999999999999999994 55666655432 2211111 222 12244555556665432
Q ss_pred CCe--EEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHH
Q 005018 481 EGV--WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWV 558 (719)
Q Consensus 481 ~g~--waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWl 558 (719)
... |-+.+. .. +.... .-.-|++.++ .|+|||.-+++..- . +...++....--+.+.-+
T Consensus 73 ~~~i~~~~~~~-------~~----~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 133 (140)
T cd07819 73 AGSVSWTLVEG-------EG----NRSQE---GSYTLTPKGD-GTRVTFDLTVELTV-P---LPGFLKRKAEPLVLDEAL 133 (140)
T ss_pred CCcEEEEEecc-------cc----eeEEE---EEEEEEECCC-CEEEEEEEEEEecC-C---CCHHHHHHhhhHHHHHHH
Confidence 222 222111 00 11111 1255788877 49999999998743 2 333334333333344445
Q ss_pred HHHHHH
Q 005018 559 ATLQRQ 564 (719)
Q Consensus 559 atLqR~ 564 (719)
..|.++
T Consensus 134 ~~l~~~ 139 (140)
T cd07819 134 KGLKKR 139 (140)
T ss_pred HhHhhh
Confidence 555443
No 88
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=82.94 E-value=6.5 Score=41.10 Aligned_cols=138 Identities=13% Similarity=0.169 Sum_probs=88.2
Q ss_pred EechhhHHHHhcCh---hhhhhhcccccccceEEEEee-CCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecC
Q 005018 406 IINSLALVETLMDP---NRWAEMFPCMIARTATTDVIS-SGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (719)
Q Consensus 406 ~m~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis-~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~ 481 (719)
.+.|..|-++|+|. .+|=.+ |.+-.||+..+ ||. .++|=+.+.|.|+- .||+-++|---+.++
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d~~tg~--------~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~ 129 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDM----VIELETIEEDPVTGT--------EVVYWVKKFPFPMS-NRDYVYVRRWWESDE 129 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHH----hhhheeeeecCCCCc--------eEEEEEEeCCcccC-CccEEEEEEEEecCC
Confidence 34688889999996 589888 45556666655 332 68999999998876 599999987777776
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCcceEe-----ecCCC-ccEEEEEEeeeeccccccccchhhhccchhHHHH
Q 005018 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQ-----DMPNG-YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQ 555 (719)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq-----~~~nG-~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~ 555 (719)
-.-+||-.|+..-.- +.....+|..-.=||.+|+ +-++| .|-++|++|= . -.+.+-++.=+.-.|+-
T Consensus 130 k~~~i~s~~v~h~s~-P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p----~--~~iP~~~v~~~~~~gmp 202 (219)
T KOG2761|consen 130 KDYYIVSKSVQHPSY-PPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHNP----G--GGIPKWVVKLAVRKGMP 202 (219)
T ss_pred ceEEEEEecccCCCc-CCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEECC----C--CCCcHHHHHHHHHhcCh
Confidence 777777777663210 1011257888889999999 55555 3455555542 1 12334444444444444
Q ss_pred HHHHHHHH
Q 005018 556 RWVATLQR 563 (719)
Q Consensus 556 rWlatLqR 563 (719)
--|.-|..
T Consensus 203 ~~vkKm~~ 210 (219)
T KOG2761|consen 203 GAVKKMEK 210 (219)
T ss_pred HHHHHHHH
Confidence 44444433
No 89
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.53 E-value=4.2 Score=35.39 Aligned_cols=51 Identities=35% Similarity=0.554 Sum_probs=37.1
Q ss_pred HHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH----HHhhHhhh
Q 005018 192 QLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (719)
Q Consensus 192 ~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~----r~~~~~~~ 263 (719)
++.-.....|+.+++.|+.+|..+.+ +...|+.||.+|++|.. |+.++.+|
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~---------------------e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKE---------------------ENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444566788888888888888875 45578899999999875 55565554
No 90
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=82.32 E-value=2.2 Score=43.53 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=63.9
Q ss_pred HHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhc
Q 005018 599 MTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 678 (719)
Q Consensus 599 M~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 678 (719)
++..|...+.. .++|... . ..++|+|.+|...+ +.+++.+.-..++.|+..++++|+|-..+.+|+-.+
T Consensus 10 ~~~~~~~~l~~--~~~W~~~-~--~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQ-K--ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHhcccC--CCCcEEe-c--cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44556666655 6789987 3 35799999999732 338899999999999999999999999999999753
Q ss_pred CCCchhhhhhhccCCCCCceEEEEeec
Q 005018 679 NGGPMQEMAHIAKGQDHGNCVSLLRAS 705 (719)
Q Consensus 679 nG~~vqE~a~Ia~G~~~gN~VSllr~~ 705 (719)
.. ...+..+ +..+.|..++.+
T Consensus 79 ~~--~~~l~~~----~~~~~v~y~~~~ 99 (215)
T cd08877 79 IR--SKKVKQL----GRADKVCYLRVD 99 (215)
T ss_pred ee--eEEEeec----CCceEEEEEEEe
Confidence 21 1222222 334566666543
No 91
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=82.05 E-value=9.6 Score=35.41 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=75.7
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecC
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~ 481 (719)
+..|...+..+.+++-|.+.|.+.+|.+ ..++|+..+. ++ +.+++.+..|. -.|++. .|++-. .+
T Consensus 4 s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~~ 68 (138)
T cd07813 4 SRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-PP 68 (138)
T ss_pred EEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-CC
Confidence 4456667788889999999999999995 5566666432 22 22223333332 234443 333321 13
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 005018 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 561 (719)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatL 561 (719)
. .+ -=.++++ . + ..+=--..+++.++|.|+|||.-|++..-. |+..|++.-+.=-+++-|.++
T Consensus 69 ~-~i-~~~~~~g----~----~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~f 131 (138)
T cd07813 69 E-SI-EAELVDG----P----F---KHLEGEWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDAF 131 (138)
T ss_pred C-EE-EEEecCC----C----h---hhceeEEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3 22 1112222 1 1 111123457889989999999999998732 333333333333366777888
Q ss_pred HHHHHH
Q 005018 562 QRQCEC 567 (719)
Q Consensus 562 qR~cer 567 (719)
.+.|++
T Consensus 132 ~~~~~~ 137 (138)
T cd07813 132 EKRAKQ 137 (138)
T ss_pred HHHHhh
Confidence 777764
No 92
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=81.89 E-value=1.6 Score=35.50 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=33.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccch
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNR 185 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNR 185 (719)
||+|..+|.+|-..+=..++... ...+||+++|++..+|..|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 46677899888877777787765 57889999999999999998874
No 93
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=81.51 E-value=21 Score=32.21 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=68.0
Q ss_pred eeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCC
Q 005018 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (719)
Q Consensus 403 gvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g 482 (719)
..|...+..+-+.|.|.+.|.+-+|.+ ..+++...+. ..|+...++.-. . +.+. -++.. .++.
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~~----g----~~~~-~~i~~-~~~~ 69 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLKD----G----GTVR-ERLLA-LDDA 69 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeCC----C----CEEE-EEehh-cCcc
Confidence 346667889999999999999888864 4556655432 134432221110 0 1111 01111 1111
Q ss_pred eEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHH
Q 005018 483 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQ 562 (719)
Q Consensus 483 ~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLq 562 (719)
.-.|. ..+... +.+ +...-.-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-+..|+.|.
T Consensus 70 ~~~i~-~~~~~~-~~~-------~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L~ 136 (140)
T cd07821 70 ERRYS-YRIVEG-PLP-------VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAALK 136 (140)
T ss_pred CCEEE-EEecCC-CCC-------cccceEEEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHHH
Confidence 00010 011100 000 0111123557788887899999999887755 3344454444444556666676
Q ss_pred HHHH
Q 005018 563 RQCE 566 (719)
Q Consensus 563 R~ce 566 (719)
++||
T Consensus 137 ~~~~ 140 (140)
T cd07821 137 AALE 140 (140)
T ss_pred HhhC
Confidence 6653
No 94
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=81.28 E-value=5.1 Score=40.66 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhc--cc
Q 005018 592 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRD--ER 669 (719)
Q Consensus 592 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrd--e~ 669 (719)
+=++.|.|..-|.. ..+|... . ..++|+|.+++..+.. +-+ ..+..-+|.+|+.||++|.| +.
T Consensus 7 ~~~~~~~~~~~~~~------~~~W~~~-~--~~~~i~v~~~~~~~~~----~~~--~k~~~~i~~~~~~v~~~l~d~~~~ 71 (206)
T cd08867 7 AEKLANEALQYIND------TDGWKVL-K--TVKNITVSWKPSTEFT----GHL--YRAEGIVDALPEKVIDVIIPPCGG 71 (206)
T ss_pred HHHHHHHHHHHhcC------cCCcEEE-E--cCCCcEEEEecCCCCC----CEE--EEEEEEEcCCHHHHHHHHHhcCcc
Confidence 33455566655542 2789987 3 3478999998643221 222 35666679999999999999 89
Q ss_pred cchhhhhhc
Q 005018 670 LRSEWDILS 678 (719)
Q Consensus 670 ~R~eWd~ls 678 (719)
.|.+||...
T Consensus 72 ~r~~Wd~~~ 80 (206)
T cd08867 72 LRLKWDKSL 80 (206)
T ss_pred ccccccccc
Confidence 999999543
No 95
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=80.68 E-value=3.7 Score=39.71 Aligned_cols=56 Identities=25% Similarity=0.480 Sum_probs=42.4
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005018 613 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 613 ~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 677 (719)
.+|..+ .. .++|+|..++..+ . .+...++..-++.++..|+++|.|...|.+||-.
T Consensus 15 ~~W~~~-~~--~~~v~vy~~~~~~-~-----~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~ 70 (193)
T cd00177 15 EGWKLV-KE--KDGVKIYTKPYED-S-----GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKN 70 (193)
T ss_pred CCeEEE-EE--CCcEEEEEecCCC-C-----CceeEEEEEEECCCHHHHHHHHhCCchhhchhhc
Confidence 589988 32 4589998887633 1 1335556667789999999999999999999953
No 96
>PRK10724 hypothetical protein; Provisional
Probab=79.89 E-value=22 Score=35.06 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=81.8
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeecee
Q 005018 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (719)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~ 479 (719)
+.+.+|.-.+..|.+.+.|.++|-+.+|- |...+|+.-.. ++ +.|++.|--.-+ .+-+.-|+...
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~----~~~s~vl~~~~----~~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPG----CTGSRVLESTP----GQ----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcc----cCeEEEEEecC----CE----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 44577888999999999999999999888 56666776433 12 457765543332 33333333332
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 005018 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 559 (719)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWla 559 (719)
.++ .+.+ ..+++ + .+.+=.---++++++|.|+|+.--+.|+.. .||.+++...+-=.|++-+.
T Consensus 83 ~~~-~I~~-~~~~G----p-------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~~~~~~~~~~~mv~ 145 (158)
T PRK10724 83 SNQ-SILM-QLVDG----P-------FKKLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAFGRVFKELASNMVQ 145 (158)
T ss_pred CCC-EEEE-EecCC----C-------hhhccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHHHHHHHHHHHHHHH
Confidence 233 3322 22222 2 123333344677887789999998888654 34444553333344667776
Q ss_pred HHHHHHHHH
Q 005018 560 TLQRQCECL 568 (719)
Q Consensus 560 tLqR~cerl 568 (719)
+..+-|+.+
T Consensus 146 AF~~Ra~~~ 154 (158)
T PRK10724 146 AFTVRAKEV 154 (158)
T ss_pred HHHHHHHHH
Confidence 765556554
No 97
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=79.29 E-value=33 Score=31.24 Aligned_cols=133 Identities=9% Similarity=-0.005 Sum_probs=70.1
Q ss_pred eeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCC
Q 005018 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (719)
Q Consensus 403 gvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g 482 (719)
..|...+..+-++|.|.+.|.+-+|.+ ..+++++. . +. ++.+-.|....+++ ..+++. .+.+
T Consensus 6 i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~--~----~~------~~~~~~~~g~~~~~-~~~v~~-~~~~ 67 (139)
T cd07817 6 ITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDD--T----RS------HWKAKGPAGLSVEW-DAEITE-QVPN 67 (139)
T ss_pred EEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCC--C----ce------EEEEecCCCCcEEE-EEEEec-cCCC
Confidence 344556788999999999999999975 44555532 1 11 11112232333433 335544 3344
Q ss_pred eEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHH
Q 005018 483 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQ 562 (719)
Q Consensus 483 ~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLq 562 (719)
..++.. ..++.. . .....+ +++.++|.++||+.-|.+......-.++-+++..-+-=..+.+|..|.
T Consensus 68 ~~i~~~-~~~~~~--~----~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 134 (139)
T cd07817 68 ERIAWR-SVEGAD--P----NAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFK 134 (139)
T ss_pred CEEEEE-ECCCCC--C----cceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 433222 222211 1 111222 466777789999999998775333334344443333334455555555
Q ss_pred HHHH
Q 005018 563 RQCE 566 (719)
Q Consensus 563 R~ce 566 (719)
+++|
T Consensus 135 ~~aE 138 (139)
T cd07817 135 QLVE 138 (139)
T ss_pred HHhh
Confidence 5544
No 98
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=78.62 E-value=14 Score=34.15 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=22.8
Q ss_pred ceeEEechhhHHHHhcChhhhhhhccc
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPC 428 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~ 428 (719)
+.+|.-.+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 445666788999999999999998887
No 99
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=78.36 E-value=3 Score=44.98 Aligned_cols=42 Identities=33% Similarity=0.450 Sum_probs=27.4
Q ss_pred hhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005018 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (719)
Q Consensus 197 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~ 255 (719)
+...+++||++|+.|+..+++++. ...+.|+.||++||+.|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~-----------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE-----------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 334567777777777777755443 123347888888888654
No 100
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=78.30 E-value=52 Score=29.71 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.3
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEee
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (719)
+..|...+.++-++|.|...|.+-+|.+ ..+++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 3467778999999999999999988875 5666666
No 101
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.31 E-value=9 Score=33.29 Aligned_cols=60 Identities=32% Similarity=0.445 Sum_probs=39.7
Q ss_pred HHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHH----HHHhhHhhhh
Q 005018 191 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL----DRVCALAGKF 264 (719)
Q Consensus 191 k~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el----~r~~~~~~~~ 264 (719)
-++.-..-..|+-+.+.|+++|..|..+..+ ..-...-|..||..||+|- +|++++.+|+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~--------------~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN--------------AQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444566777888888888877665431 1123446888999999996 5777777653
No 102
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=76.56 E-value=8.9 Score=38.92 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=43.0
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005018 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 677 (719)
..++|... . ..++|+|.+|+..+ +.| +..-+...-++.+|+.||+.|.| .|.+||..
T Consensus 17 ~~~~W~~~-~--~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~ 73 (197)
T cd08869 17 KSKGWVSV-S--SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDD 73 (197)
T ss_pred ccCCceEE-e--cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchh
Confidence 46799966 3 35799999999732 223 34457778889999999999988 68999953
No 103
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=76.36 E-value=6.4 Score=40.00 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=41.3
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhh-hccccchhhhhhcC
Q 005018 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDERLRSEWDILSN 679 (719)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FL-rde~~R~eWd~lsn 679 (719)
..+|... .. ..++|.|.+|+. +| .|-+ ..+...+++||..||++| .|...|.+||-.+.
T Consensus 23 ~~~W~l~-~~-~~~~i~i~~r~~---~~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~ 82 (208)
T cd08868 23 DPGWKLE-KN-TTWGDVVYSRNV---PG--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVL 82 (208)
T ss_pred CCCceEE-Ee-cCCCCEEEEEEc---CC--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCccc
Confidence 3489977 32 223899999985 33 2334 444456799999999865 58899999997543
No 104
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=74.01 E-value=8.2 Score=34.85 Aligned_cols=47 Identities=30% Similarity=0.482 Sum_probs=36.8
Q ss_pred HHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhHh
Q 005018 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (719)
Q Consensus 200 ~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~~ 261 (719)
.+.+++..|+.|.+-|++.+. ..++.-+..+||.+|++|+.|+..+-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve---------------~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVE---------------HNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---------------hCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788888888887764 35677789999999999999988664
No 105
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=73.94 E-value=9.6 Score=40.05 Aligned_cols=61 Identities=18% Similarity=0.441 Sum_probs=45.7
Q ss_pred cCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEE-EEEEeeccc-cChhHHHHhhhccccchhhhhh
Q 005018 609 ASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 609 ~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl-~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~l 677 (719)
+-..++|... . ..++|+|-+|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-
T Consensus 22 ~~~~~~W~l~-~--~~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~ 84 (235)
T cd08872 22 DVGADGWQLF-A--EEGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETT 84 (235)
T ss_pred cCCCCCCEEE-E--eCCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhh
Confidence 4455589977 3 35789999987632 2 3332 356666778 9999999999999999999974
No 106
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.10 E-value=5.2 Score=42.58 Aligned_cols=41 Identities=34% Similarity=0.521 Sum_probs=25.6
Q ss_pred hhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005018 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (719)
Q Consensus 197 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~ 255 (719)
....+++||++|++||..++..+. +.+.|+.||.+||+.|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~------------------~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ------------------ELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhc
Confidence 344566667777777666665443 34456777777777543
No 107
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=72.15 E-value=38 Score=30.65 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=34.8
Q ss_pred ceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005018 513 CVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (719)
Q Consensus 513 clIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (719)
+.+.+.+.|.|+|+|.+... .....++..++...+.=+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767789999864222 1122345666777777788888999988886
No 108
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.62 E-value=17 Score=44.86 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=40.4
Q ss_pred HHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhHhh
Q 005018 201 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAG 262 (719)
Q Consensus 201 l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~~~ 262 (719)
++..++.|..+.+-|+++|.+- |......-+++-.||.++|+|||+-|-|++.+.+
T Consensus 337 lkEr~deletdlEILKaEmeek------G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEEK------GSDGQAASSYQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4444555556666678888875 3333344578999999999999999999876643
No 109
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=66.24 E-value=70 Score=28.73 Aligned_cols=135 Identities=14% Similarity=0.105 Sum_probs=68.7
Q ss_pred eeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCC
Q 005018 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (719)
Q Consensus 403 gvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g 482 (719)
..|...+..+-++|-|.++|.+-.|.+ ..+++++.+..+ .|+.-.+...+ -+.+--...|++.--.+.
T Consensus 5 ~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~~~--~g~~~~~~~~~------~g~~~~~~~~v~~~~p~~ 72 (140)
T cd08865 5 IVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGPVG--VGTRYHQVRKF------LGRRIELTYEITEYEPGR 72 (140)
T ss_pred EEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCCCc--CccEEEEEEEe------cCceEEEEEEEEEecCCc
Confidence 445567888899999999999999986 456666544322 34332221111 011111223333322222
Q ss_pred eEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHH
Q 005018 483 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQ 562 (719)
Q Consensus 483 ~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLq 562 (719)
.+. ... .. +.. . ... =.-+++.++| |+|||-.+++. ..+-.++.+++...+.=+-++++..|.
T Consensus 73 ~~~-~~~-~~----~~~-~-~~~------~~~~~~~~~~-t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk 135 (140)
T cd08865 73 RVV-FRG-SS----GPF-P-YED------TYTFEPVGGG-TRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENLK 135 (140)
T ss_pred EEE-EEe-cC----CCc-c-eEE------EEEEEEcCCc-eEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 221 111 11 110 0 111 1335677665 99999998876 333345555554444444556666665
Q ss_pred HHHH
Q 005018 563 RQCE 566 (719)
Q Consensus 563 R~ce 566 (719)
+.+|
T Consensus 136 ~~~e 139 (140)
T cd08865 136 ALLE 139 (140)
T ss_pred HHhh
Confidence 5544
No 110
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=64.09 E-value=19 Score=37.08 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=40.3
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHH-hhhccccchhhhh
Q 005018 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN-FLRDERLRSEWDI 676 (719)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~-FLrde~~R~eWd~ 676 (719)
..+|..- .. ..++|+|.+++. ++. | .+-+.-.-+++||+.||+ .|.|...|.+||.
T Consensus 24 ~~~W~l~-~~-~~~gi~V~s~~~---~~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~ 80 (209)
T cd08906 24 EENWKFE-KN-NDNGDTVYTLEV---PFH--G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNK 80 (209)
T ss_pred ccCCEEE-Ee-cCCCCEEEEecc---CCC--C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCc
Confidence 3589954 21 247899999765 222 2 233666677999999985 7899999999995
No 111
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=62.48 E-value=59 Score=30.37 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=31.1
Q ss_pred EeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005018 515 VQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (719)
Q Consensus 515 Iq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (719)
+++. +|.|+|+|..+.++.-.....++.+++...+.=...+.|..|++++|
T Consensus 99 ~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 99 LEPV-GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEc-CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5667 45599999999887755444455555543333334555566655554
No 112
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=62.44 E-value=1.3 Score=37.47 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=27.6
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccc
Q 005018 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (719)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWF 182 (719)
++|.+||+++...+=..+.. ......++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~----~g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLE----SGESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHHH----HHCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCceEeeecccccccccccHHH
Confidence 34567998887766555521 23568889999999999999994
No 113
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=62.36 E-value=17 Score=42.39 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=16.7
Q ss_pred cCCCCCeeeccCCCcccccChHHhhhh
Q 005018 356 QTDEPLWIRSFEGSGRQVLNHEEYLRT 382 (719)
Q Consensus 356 ~~~eplWi~~~~~gp~e~Ln~~eY~~~ 382 (719)
+..++|.+.+.+. +--.|.-||.+.
T Consensus 439 ne~p~L~~~s~dc--r~~~n~te~~~l 463 (655)
T KOG4343|consen 439 NEEPLLYIPSPDC--RPLINTTESLRL 463 (655)
T ss_pred cCCCceeccCccc--hhhhhhhhhhhh
Confidence 5577788876544 346777777665
No 114
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=61.84 E-value=15 Score=37.95 Aligned_cols=53 Identities=23% Similarity=0.502 Sum_probs=40.2
Q ss_pred CceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhh
Q 005018 614 KWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 614 ~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
+|..+ ...+.+.+..+|. .+|.| +.--..++=+|.+|..|...|-|+ |.+||.
T Consensus 28 ~w~~~---~~~~~~el~~~k~--~~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~ 80 (204)
T cd08908 28 GWVSY---STSEQAELSYKKV--SEGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDV 80 (204)
T ss_pred CCccc---CCCCcEEEEEecc--CCCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHH
Confidence 78777 2357799999986 35655 556677788898888888777775 999995
No 115
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=54.26 E-value=17 Score=40.19 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=12.7
Q ss_pred hhhHHHHHhHHHHHhhHhHHh
Q 005018 197 ENSLLRQENDKLRAENMSIRD 217 (719)
Q Consensus 197 e~~~l~~en~~L~~en~~l~e 217 (719)
|+..||+||++|+.||.+|+.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~ 53 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKI 53 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHH
Confidence 445566666666666666654
No 116
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.82 E-value=21 Score=41.32 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhHHHHHHHhhHh
Q 005018 240 EQHLRIENARLKDELDRVCALA 261 (719)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~~~~ 261 (719)
.++|..|-..|++|+.++....
T Consensus 111 ~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 111 TQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666655554443
No 117
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=53.46 E-value=14 Score=41.22 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=28.0
Q ss_pred hhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005018 196 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (719)
Q Consensus 196 ~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~ 255 (719)
.....+++||++|++||..|++++. +.+.+..||++|++.+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhc
Confidence 3446677777777777777776553 34456678888776544
No 118
>smart00340 HALZ homeobox associated leucin zipper.
Probab=53.33 E-value=14 Score=29.18 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=15.7
Q ss_pred HHHHHHHHhHHHHHHHhhH
Q 005018 242 HLRIENARLKDELDRVCAL 260 (719)
Q Consensus 242 ~L~~ENa~Lk~el~r~~~~ 260 (719)
.|..||.||++|++.++++
T Consensus 16 ~LteeNrRL~ke~~eLral 34 (44)
T smart00340 16 SLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5777899999999988865
No 119
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=52.82 E-value=15 Score=37.05 Aligned_cols=20 Identities=50% Similarity=0.625 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHhHHHHHHHh
Q 005018 239 EEQHLRIENARLKDELDRVC 258 (719)
Q Consensus 239 e~q~L~~ENa~Lk~el~r~~ 258 (719)
|+..|++|++|||||+..++
T Consensus 25 EKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55668888888888876554
No 120
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.00 E-value=32 Score=32.23 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHhHHHHHHHhh
Q 005018 239 EEQHLRIENARLKDELDRVCA 259 (719)
Q Consensus 239 e~q~L~~ENa~Lk~el~r~~~ 259 (719)
+..+|++||+.|++.|.+...
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455677788888877766543
No 121
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=50.85 E-value=35 Score=37.03 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=26.1
Q ss_pred HhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005018 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (719)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~ 255 (719)
-.+...+..+|+.|++++.++.+... +.+.|+.||.+||+.|.
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~~------------------~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLLE------------------EVESLEEENKRLKELLD 107 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhC
Confidence 34445556666666666666555332 55567777777777644
No 122
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=50.42 E-value=23 Score=45.46 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=67.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhhhhHHHHHhHHHHHhhHh
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMS 214 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~ 214 (719)
+-.+++++.-|...|..+|+...||.-.++..+++-|++..|.+-.|||++++++.+...+.. +-..
T Consensus 445 ~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~a-------------rg~~ 511 (1406)
T KOG1146|consen 445 LLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLA-------------RGEV 511 (1406)
T ss_pred hhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhcccccccc-------------cccc
Confidence 445677899999999999999999999999999999999999999999998888875443321 1111
Q ss_pred HHhhhcCCCCCCCCCCCcc-CCCChhhH
Q 005018 215 IRDAMRNPICTNCGGPAII-GDISLEEQ 241 (719)
Q Consensus 215 l~e~~~~~~C~~Cggp~~~-~~~~~e~q 241 (719)
.+---...-|-.|-..+.. +.++...|
T Consensus 512 ~~~~~~p~~C~~C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 512 YRCPGKPYPCRACNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred ccCCCCcccceeeeeeeecchHHHHHHH
Confidence 1112223458888877754 44433333
No 123
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=50.20 E-value=57 Score=30.81 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHhHHHHHHHh
Q 005018 239 EEQHLRIENARLKDELDRVC 258 (719)
Q Consensus 239 e~q~L~~ENa~Lk~el~r~~ 258 (719)
+..+|++||..||+.|+++.
T Consensus 37 EN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 37 ENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55678888888888887753
No 124
>smart00338 BRLZ basic region leucin zipper.
Probab=49.63 E-value=67 Score=26.77 Aligned_cols=39 Identities=33% Similarity=0.443 Sum_probs=26.7
Q ss_pred HhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHH
Q 005018 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (719)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el 254 (719)
+..-..|..+...|..+|..|+.. ...|..|+..|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~---------------------~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKE---------------------IERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 444556777778888888877763 345777777777764
No 125
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.87 E-value=34 Score=31.75 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=21.3
Q ss_pred ceeccccchhhHHHHHHHHhhhhHHHHHhHHHHHhhHhHHh
Q 005018 177 QVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (719)
Q Consensus 177 QVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e 217 (719)
+...||++.=- .+-.+.+++...+++++++++++|..|++
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678865411 11122344445566666666666665555
No 126
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=48.73 E-value=52 Score=37.76 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeee
Q 005018 339 MFLELALAAMDELVKMAQTDEPLWIR 364 (719)
Q Consensus 339 ~~~~lA~~Am~El~~la~~~eplWi~ 364 (719)
.|++ |..||.|+-.+.+..---|.+
T Consensus 398 kIle-ak~al~evtt~lrErl~RWqQ 422 (575)
T KOG4403|consen 398 KILE-AKSALSEVTTLLRERLHRWQQ 422 (575)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444 778999998887777677876
No 127
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.84 E-value=55 Score=34.57 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=32.3
Q ss_pred HHHHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHh
Q 005018 189 MKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (719)
Q Consensus 189 ~Kk~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~ 258 (719)
.|-+....++..|..+++.|.++..++++.+ .+|+.||++|.+++.++-
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erl---------------------k~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERL---------------------KRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhch
Confidence 3344445566667777777777766666644 368888888888776543
No 128
>PF15058 Speriolin_N: Speriolin N terminus
Probab=45.54 E-value=33 Score=35.39 Aligned_cols=40 Identities=35% Similarity=0.493 Sum_probs=29.5
Q ss_pred hhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhh
Q 005018 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (719)
Q Consensus 198 ~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~ 259 (719)
+.-++.++++|-.||++||+..+ |..||.+||.-|.+.+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr----------------------LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR----------------------LIRENHELKSALGEACA 46 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH----------------------HHHHHHHHHHHHHHhhc
Confidence 34567778888888888887553 77799999987666554
No 129
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=45.19 E-value=1.5e+02 Score=26.75 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=49.8
Q ss_pred hHHHHHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhH
Q 005018 187 TQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (719)
Q Consensus 187 aK~Kk~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~ 260 (719)
.+.++..-+++...|+.++++=..-+..|..++....++-+.. +..++...+.|..|-|.|..|+.++...
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~---~~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSS---PSSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCc---cccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888877777777777777777665544333 3345668888999999999888776543
No 130
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=44.19 E-value=35 Score=37.89 Aligned_cols=73 Identities=23% Similarity=0.326 Sum_probs=48.7
Q ss_pred cccchhhHHHHHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhH
Q 005018 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (719)
Q Consensus 181 WFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~ 260 (719)
||=-=|-++| +.+....+.|+....++.+.++-|++--. ...+...|.++|+..|.+|+.+|-++..+
T Consensus 54 wff~i~~re~-qlk~aa~~llq~kirk~~e~~eglr~i~e-----------s~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 54 WFFAIGRREK-QLKTAAGQLLQTKIRKITEKDEGLRKIRE-----------SVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7644444433 34456677888888888887776665221 12234567788999999999999888877
Q ss_pred hhhhc
Q 005018 261 AGKFL 265 (719)
Q Consensus 261 ~~~~~ 265 (719)
..|.-
T Consensus 122 f~k~k 126 (401)
T PF06785_consen 122 FMKTK 126 (401)
T ss_pred HHHhc
Confidence 65543
No 131
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=43.77 E-value=11 Score=35.67 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.6
Q ss_pred EeeccccChhHHHHhhhccccchhhh
Q 005018 650 TSVWLPVSPQRLFNFLRDERLRSEWD 675 (719)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd 675 (719)
-++.+|.||++||+||.|.....+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999999885
No 132
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=43.06 E-value=73 Score=34.85 Aligned_cols=45 Identities=27% Similarity=0.266 Sum_probs=32.4
Q ss_pred HHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHH
Q 005018 191 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (719)
Q Consensus 191 k~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r 256 (719)
|+++|.+...+-.|.+.|..+|++||+ +.++|..|-.+||+=+..
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~---------------------qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKD---------------------QASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 344566777788888899999998887 344566777777775543
No 133
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=42.98 E-value=2.2e+02 Score=26.76 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=62.7
Q ss_pred eEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCCe
Q 005018 404 MVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV 483 (719)
Q Consensus 404 vV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g~ 483 (719)
.+...+.++-+++.|.++|.+-.|.+ ..+++++.|.....+...+ +.. ....|.+.-+-.++...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~~~~~~~~g~~~~-~~~-----~~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVELEPGDEAGIGARRR-YTW-----RGLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEccCCCCCCcceEEE-EEE-----EecCCcEEEEEEEEEeecCCcE
Confidence 34457889999999999999999974 6677776322222122222 110 1112222223334444334445
Q ss_pred EEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc---cccccchhhhcc
Q 005018 484 WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES---QVHQLYKPLIIS 548 (719)
Q Consensus 484 waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~---~vh~lyrpl~~S 548 (719)
+++. . ++. .. ...+ .-|++.++| |+||+-.+++..-- ..+.|+.+++..
T Consensus 78 ~~~~-~--~g~---~~--~~~~-------~~~~~~~~g-t~vt~~~~~~~~~~~~~~l~~l~~~l~~~ 129 (146)
T cd07824 78 LEVR-A--SGD---LE--GVGR-------WTLAPDGSG-TVVRYDWEVRTTKPWMNLLAPLARPVFRW 129 (146)
T ss_pred EEEE-E--EEe---ee--EEEE-------EEEEEcCCC-EEEEEEEEEEcCHHHHHhhhHhhhhHHHH
Confidence 5442 2 111 00 0011 236665554 99999888887542 355565665543
No 134
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=41.59 E-value=6.4e+02 Score=29.55 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHH-hhh-CCCCChHHHHHHHHHhcccccceeccccchhhHH-HHHHHHhhhhHHHHHhHHHHHhhHh
Q 005018 138 YHRHTPQQIQELESL-FKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQM-KTQLERHENSLLRQENDKLRAENMS 214 (719)
Q Consensus 138 RtrfT~~Ql~~LE~~-F~~-~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~-Kk~~~r~e~~~l~~en~~L~~en~~ 214 (719)
--++|.+....|.+. |.. ..+|.-+.-+++-++. +.=.+|+|.+. +|++++.--..|......-.+||++
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv-------RRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqe 290 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV-------RRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQE 290 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH-------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHH
Confidence 345788888888764 322 3456666555555554 22223333322 2222222222233334444556665
Q ss_pred HHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhHhh
Q 005018 215 IRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAG 262 (719)
Q Consensus 215 l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~~~ 262 (719)
|+. +.++|..+|.-|-++|.++.++..
T Consensus 291 L~k---------------------kV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 291 LQK---------------------KVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHH---------------------HHHHHhhccHHHHHHHHHHHHHHh
Confidence 554 667899999999999988876654
No 135
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=40.35 E-value=57 Score=32.50 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=40.9
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhH-HHHhhhccccchhhhhhc
Q 005018 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQR-LFNFLRDERLRSEWDILS 678 (719)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~-vf~FLrde~~R~eWd~ls 678 (719)
..+|... .+ +.+++.+..+...+ |. .+-.......++.++.. +.++|.|...|.+||-.+
T Consensus 18 ~~~W~~~-~~-~~~~~~~~~~~~~~--~~---~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~ 78 (206)
T smart00234 18 EPGWVLS-SE-NENGDEVRSILSPG--RS---PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNV 78 (206)
T ss_pred CCccEEc-cc-cCCcceEEEEccCC--CC---ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhc
Confidence 4579977 43 23445454554311 12 25678888999988886 668999999999999654
No 136
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.14 E-value=87 Score=27.12 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHhHHHHHHH
Q 005018 239 EEQHLRIENARLKDELDRV 257 (719)
Q Consensus 239 e~q~L~~ENa~Lk~el~r~ 257 (719)
+..+|+.||..|++||+..
T Consensus 48 e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567777888888877654
No 137
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.46 E-value=1.2e+02 Score=26.11 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=26.3
Q ss_pred hHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhHhhh
Q 005018 199 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGK 263 (719)
Q Consensus 199 ~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~~~~ 263 (719)
..|-..++.|+.||..|++ +...+..|++.|++..+-++.-...
T Consensus 10 e~Li~~~~~L~~EN~~Lr~---------------------q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRA---------------------QEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777776 3345666777777766544443333
No 138
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.45 E-value=1.5e+02 Score=24.61 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=14.3
Q ss_pred HhhhhHHHHHhHHHHHhhHhHHh
Q 005018 195 RHENSLLRQENDKLRAENMSIRD 217 (719)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e 217 (719)
...-..|....+.|..+|..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777666665
No 139
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=38.33 E-value=18 Score=37.98 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=40.6
Q ss_pred cCCCCCceeccCCCCCCceEEEE-ecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhh
Q 005018 609 ASTVHKWNKLNAGNVDEDVRVMT-RKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 609 ~s~~~~W~~l~~~~~~~dVrv~~-r~s~~~~G~P~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~l 677 (719)
+-.+.+|..+ - ...+++|.. |.- +.| | =.+.|- .-+. ++|..|+||+-|..-|.+||.+
T Consensus 25 ~~~~~~We~~-~--~k~~~~i~~q~~~--~~g-~-~~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~~ 85 (219)
T KOG2761|consen 25 CDAGQGWELV-M--DKSTPSIWRQRRP--KTG-L-YEYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDDM 85 (219)
T ss_pred cCcccchhhh-c--ccCCceEEEEccc--CCC-C-EEEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHHH
Confidence 5667899977 2 235677766 332 223 2 234443 3356 9999999999999999999964
No 140
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=38.19 E-value=24 Score=32.15 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=26.8
Q ss_pred EEEeeccccChhHHHHhhhccccchhhhhh
Q 005018 648 AATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 677 (719)
...|+.++.||+.||++|.|.....+|.-.
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~ 33 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSPK 33 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCcc
Confidence 456889999999999999999999999853
No 141
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=38.01 E-value=19 Score=27.01 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchh
Q 005018 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (719)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (719)
.+++.+...++..|... ..-.++|+.+|++...|+.|.+.-+
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46778888888777422 3467889999999999998875443
No 142
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.94 E-value=20 Score=32.30 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.8
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
..++-++.||+.||++|.|-....+|.-
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3567789999999999999999999974
No 143
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=37.39 E-value=31 Score=31.16 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=23.7
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
..++-+++||+.||++|.|.....+|.-
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 4567789999999999999999999964
No 144
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=36.84 E-value=35 Score=26.69 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceecccc
Q 005018 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (719)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQ 183 (719)
.+++.|...|...|-. ...-.++|+.+|++...|+.+..
T Consensus 4 ~L~~~er~vi~~~y~~-----~~t~~eIa~~lg~s~~~V~~~~~ 42 (50)
T PF04545_consen 4 QLPPREREVIRLRYFE-----GLTLEEIAERLGISRSTVRRILK 42 (50)
T ss_dssp TS-HHHHHHHHHHHTS-----T-SHHHHHHHHTSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcC-----CCCHHHHHHHHCCcHHHHHHHHH
Confidence 4788999999998822 34478899999999998886643
No 145
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.79 E-value=3.6e+02 Score=25.27 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=24.7
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccc
Q 005018 401 ETGMVIINSLALVETLMDPNRWAEMFPCM 429 (719)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~i 429 (719)
.+-.|...+..+-++|.|.+.|.+-+|.+
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~ 31 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGA 31 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCc
Confidence 34557778999999999999999999874
No 146
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=36.64 E-value=42 Score=32.95 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHH
Q 005018 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (719)
..+|+.|.+.|+..++ .....++|+.||++...|+.|-++.+.+.|
T Consensus 5 ~~Lt~rqreVL~lr~~------GlTq~EIAe~LGiS~~tVs~ie~ra~kkLr 50 (141)
T PRK03975 5 SFLTERQIEVLRLRER------GLTQQEIADILGTSRANVSSIEKRARENIE 50 (141)
T ss_pred cCCCHHHHHHHHHHHc------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4689999999987432 234679999999999999999775555544
No 147
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=36.59 E-value=71 Score=33.18 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=36.5
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhh
Q 005018 613 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 613 ~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
.+|..+ + ..+++.+..+|.. +|.|.-++ .+++=+|.+|..|+..+-+ .|.+||.
T Consensus 27 k~w~~~-~--~~~~~e~~ykK~~--d~~~lk~~---r~~~ei~~~p~~VL~~vl~--~R~~WD~ 80 (205)
T cd08909 27 KGWISC-S--SSDNTELAYKKVG--DGNPLRLW---KVSVEVEAPPSVVLNRVLR--ERHLWDE 80 (205)
T ss_pred cCCccc-C--CcCCeEEEEecCC--CCCceEEE---EEEEEeCCCHHHHHHHHHh--hHhhHHh
Confidence 478877 2 3578889999864 45553333 4577789777766555544 5999995
No 148
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=35.70 E-value=61 Score=35.14 Aligned_cols=47 Identities=28% Similarity=0.291 Sum_probs=33.2
Q ss_pred hhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhHh
Q 005018 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (719)
Q Consensus 198 ~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~~ 261 (719)
....-.....+++||++|++++.. -.+++......|++|.+|++.+.
T Consensus 61 ~~~~~~~~~~l~~EN~~Lr~e~~~-----------------l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 61 ISENLKDVNNLEYENYKLRQELLK-----------------KNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445677899999999987641 12455556666999999998875
No 149
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=34.93 E-value=99 Score=33.33 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhHHHHHHHhhHhhh
Q 005018 240 EQHLRIENARLKDELDRVCALAGK 263 (719)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~~~~~~ 263 (719)
.+.|+.++..|++|+..++.+...
T Consensus 231 n~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 231 NEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555666666666666655433
No 150
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=34.71 E-value=1e+02 Score=31.59 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhh-ccc
Q 005018 591 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLR-DER 669 (719)
Q Consensus 591 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLr-de~ 669 (719)
+-.++++.....|-.-. ....+|... . .+.++++|.++.. |+.. .-.+.-.-+|+|++.||++|. |-.
T Consensus 5 ~y~~~~~~~~~~~~~~~--~~~~~W~~~-~-~~~~gi~v~s~~~---~~~~----k~~k~e~~i~~~~~~l~~~l~~d~e 73 (209)
T cd08905 5 SYIKQGEEALQKSLSIL--QDQEGWKTE-I-VAENGDKVLSKVV---PDIG----KVFRLEVVVDQPLDNLYSELVDRME 73 (209)
T ss_pred HHHHHHHHHHHHHHHHh--ccccCCEEE-E-ecCCCCEEEEEEc---CCCC----cEEEEEEEecCCHHHHHHHHHhchh
Confidence 33445555555554444 245689966 2 2356788888665 2222 223345567999999996666 569
Q ss_pred cchhhhhhc
Q 005018 670 LRSEWDILS 678 (719)
Q Consensus 670 ~R~eWd~ls 678 (719)
.+.+|+..+
T Consensus 74 ~~~~W~~~~ 82 (209)
T cd08905 74 QMGEWNPNV 82 (209)
T ss_pred hhceecccc
Confidence 999999644
No 151
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.70 E-value=1e+02 Score=35.85 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=16.6
Q ss_pred CCChhhHHHHHHHHHhHHHHHHHhh
Q 005018 235 DISLEEQHLRIENARLKDELDRVCA 259 (719)
Q Consensus 235 ~~~~e~q~L~~ENa~Lk~el~r~~~ 259 (719)
+...+.++|..|-++|+..|+.+..
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777778777766643
No 152
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=34.67 E-value=29 Score=31.31 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=24.6
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
..+.-+++||+.||++|.|.....+|.-
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~~ 31 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWHP 31 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhcc
Confidence 3567789999999999999999999973
No 153
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.64 E-value=22 Score=32.61 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.3
Q ss_pred EeeccccChhHHHHhhhccccchhhhh
Q 005018 650 TSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
.++-++.||++||+||.|.....+|.-
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 467789999999999999999999983
No 154
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=33.47 E-value=26 Score=32.41 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.6
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
.+++.++.||.+||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 3688999999999999999999999974
No 155
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=33.32 E-value=3.1e+02 Score=23.48 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=26.1
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEee
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (719)
+..|...+..+-+.|.|...|..-+|.+ ...+++.
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~----~~~~~~~ 38 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGL----ERVEVLG 38 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCccc----ceEEEcC
Confidence 3445556889999999999999998884 4444454
No 156
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.05 E-value=26 Score=32.90 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEeeccccChhHHHHhhhccccchhh
Q 005018 648 AATSVWLPVSPQRLFNFLRDERLRSEW 674 (719)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eW 674 (719)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 157
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=33.02 E-value=31 Score=31.43 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.4
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
..++-++.||+.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4677889999999999999999999985
No 158
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=31.66 E-value=34 Score=31.15 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=26.1
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 005018 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345678899999999999999999999963
No 159
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=31.45 E-value=47 Score=33.68 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=21.3
Q ss_pred CCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005018 222 PICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (719)
Q Consensus 222 ~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~ 255 (719)
-.||.||++...-+-+-..+.|...-+.|++++.
T Consensus 137 F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 137 FRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 4699999988766545555555555555555543
No 160
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.76 E-value=1.3e+02 Score=34.59 Aligned_cols=118 Identities=15% Similarity=0.097 Sum_probs=64.6
Q ss_pred CCCCCceeeeccce---eEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhccccccc
Q 005018 390 KPNGFVTEASRETG---MVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVP 466 (719)
Q Consensus 390 ~~~g~~~EASR~sg---vV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp 466 (719)
.++|....|+=-.. +=.+|...|-.+|.-.. +- |..|+-..-=+--+.|+++-++.+= +| .--.-
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt---dk----Vt~ak~~~~~~~vVsgs~DRtiK~W--Dl---~k~~C 295 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT---DK----VTAAKFKLSHSRVVSGSADRTIKLW--DL---QKAYC 295 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcccc---cc----eeeehhhccccceeeccccchhhhh--hh---hhhhe
Confidence 45666666664444 66678888888886521 11 1111110000001235555555442 11 12455
Q ss_pred CceeeEEeeeceecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEE
Q 005018 467 VREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVE 529 (719)
Q Consensus 467 ~Re~~fLRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVe 529 (719)
+|++.++=||--+.-+ ++.+-+.+... .+|++-.=|+=..+.+|-|+ +||=|+
T Consensus 296 ~kt~l~~S~cnDI~~~-----~~~~~SgH~Dk----kvRfwD~Rs~~~~~sv~~gg-~vtSl~ 348 (459)
T KOG0288|consen 296 SKTVLPGSQCNDIVCS-----ISDVISGHFDK----KVRFWDIRSADKTRSVPLGG-RVTSLD 348 (459)
T ss_pred eccccccccccceEec-----ceeeeeccccc----ceEEEeccCCceeeEeecCc-ceeeEe
Confidence 6666667777654433 33333333332 48899888888889999887 888775
No 161
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.54 E-value=1.2e+02 Score=35.36 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005018 186 RTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (719)
Q Consensus 186 RaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~ 255 (719)
..+.+-.+.......+.+++++|+.|.+.+..... +..-..+.|..||++|+++++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~--------------dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG--------------DDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555566677777777766553333222 111233467788999998874
No 162
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=30.39 E-value=29 Score=31.51 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.7
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
..|+-++.||+.||++|.|..+-.+|.-
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~ 30 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFG 30 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhC
Confidence 3577789999999999999999999963
No 163
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=30.35 E-value=66 Score=26.48 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHhhhCC--CCChHHHHHHHHHhcccccce
Q 005018 141 HTPQQIQELESLFKECP--HPDEKQRLELSKRLCLETRQV 178 (719)
Q Consensus 141 fT~~Ql~~LE~~F~~~~--yPs~~~R~eLA~~LgLs~rQV 178 (719)
+|+.|.+.|...|+..- +|-...-.+||++||+++.-+
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~ 40 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTV 40 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHH
Confidence 58899999999998765 466777889999999988554
No 164
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=30.29 E-value=1.6e+02 Score=31.04 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=32.4
Q ss_pred HHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhHh
Q 005018 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (719)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~~ 261 (719)
+..-..+++...++++.|..++.+ -+-..|+.||++||.||++++.-.
T Consensus 92 q~~v~~QQ~~~f~kiRsel~S~e~--------------------sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 92 QEKVSYQQKVDFAKIRSELVSIER--------------------SEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777777777555443 133458889999999999987554
No 165
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.99 E-value=36 Score=31.49 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.3
Q ss_pred EeeccccChhHHHHhhhccccchhhh
Q 005018 650 TSVWLPVSPQRLFNFLRDERLRSEWD 675 (719)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd 675 (719)
.+.-+..||++||++|-|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 45667899999999999999999996
No 166
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.41 E-value=36 Score=29.48 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.7
Q ss_pred EeeccccChhHHHHhhhccccchhhhh
Q 005018 650 TSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
.++-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 466788999999999999999999963
No 167
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.40 E-value=57 Score=30.44 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=26.4
Q ss_pred EEEeeccccChhHHHHhhhccccchhhhhhc
Q 005018 648 AATSVWLPVSPQRLFNFLRDERLRSEWDILS 678 (719)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 678 (719)
...|+-++.||++||+++.|.....+|.-.+
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 3457778999999999999999999997533
No 168
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=28.59 E-value=15 Score=43.45 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=37.9
Q ss_pred CCCHHHHHHH-HHHhhhCCCCChHHHHHHHHHhcc-------cccceeccccchhhHHHHHHHH
Q 005018 140 RHTPQQIQEL-ESLFKECPHPDEKQRLELSKRLCL-------ETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 140 rfT~~Ql~~L-E~~F~~~~yPs~~~R~eLA~~LgL-------s~rQVkvWFQNRRaK~Kk~~~r 195 (719)
+|-..|..++ +..|.++++++.....+--+++.+ +.+-|++||.|||.++|+.+..
T Consensus 697 k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k~~ 760 (769)
T KOG3755|consen 697 KFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLKMS 760 (769)
T ss_pred HhhhcceeecchhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhhcc
Confidence 3333333333 456777888887777666666544 4578999999999999976543
No 169
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=28.51 E-value=1.4e+02 Score=30.00 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchh
Q 005018 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (719)
..+|+++++++.+.-.++ |....+..||+++|+++.-|.+=.+--.
T Consensus 84 y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~~~ 129 (164)
T PF12824_consen 84 YHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPAPK 129 (164)
T ss_pred ccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCCCH
Confidence 578999999999988776 5678899999999999988876665444
No 170
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.26 E-value=31 Score=37.13 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhHHHHHHHhhHhhhh
Q 005018 239 EEQHLRIENARLKDELDRVCALAGKF 264 (719)
Q Consensus 239 e~q~L~~ENa~Lk~el~r~~~~~~~~ 264 (719)
....|..||+.|+.+++.+.....++
T Consensus 223 r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 223 RVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888888888887776654
No 171
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.35 E-value=98 Score=30.60 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=30.2
Q ss_pred eeccccchhh-----HHHHHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCC
Q 005018 178 VKFWFQNRRT-----QMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPIC 224 (719)
Q Consensus 178 VkvWFQNRRa-----K~Kk~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C 224 (719)
.+|||-|... ...-.....+...++.++..|+.+...++.++.+..+
T Consensus 56 qkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 56 QKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred eEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3788877644 2233334555677777778888887777777765433
No 172
>PF15392 Joubert: Joubert syndrome-associated
Probab=26.53 E-value=4.9e+02 Score=29.06 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=14.6
Q ss_pred CCceeeeccceeEEe--chhhHHHHhcCh
Q 005018 393 GFVTEASRETGMVII--NSLALVETLMDP 419 (719)
Q Consensus 393 g~~~EASR~sgvV~m--~~~~LVe~lmD~ 419 (719)
++.+|--||--||-= =+.++=.||-|.
T Consensus 240 ~~~~e~eRe~~vvSpWt~P~eI~~iL~~s 268 (329)
T PF15392_consen 240 QVCIEYEREETVVSPWTLPSEIHRILHDS 268 (329)
T ss_pred cchhhhhccccccCCCcCcHHHHHHHhcC
Confidence 444556666555532 245555666655
No 173
>smart00340 HALZ homeobox associated leucin zipper.
Probab=26.31 E-value=62 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=20.1
Q ss_pred HHHhhhhHHHHHhHHHHHhhHhHHhhh
Q 005018 193 LERHENSLLRQENDKLRAENMSIRDAM 219 (719)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~e~~ 219 (719)
+.+.+...|+.-.+.|.+||.+|+.++
T Consensus 2 QTEvdCe~LKrcce~LteeNrRL~ke~ 28 (44)
T smart00340 2 QTEVDCELLKRCCESLTEENRRLQKEV 28 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888877644
No 174
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.87 E-value=78 Score=29.40 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=19.9
Q ss_pred cccchhhHHHHHHHHhhhhHHHHHhHHHHHhhHhHH
Q 005018 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIR 216 (719)
Q Consensus 181 WFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~ 216 (719)
|+..+..+.+....++++..++++|+.|+.|.+.++
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444445555566666666666666655554
No 175
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=25.78 E-value=90 Score=20.58 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceecc
Q 005018 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFW 181 (719)
Q Consensus 141 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvW 181 (719)
++.++...+...|... ....++++.++++...|..|
T Consensus 6 ~~~~~~~~i~~~~~~~-----~s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 6 LTPEQIEEARRLLAAG-----ESVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHh
Confidence 5666666666666532 24668899999998887766
No 176
>COG5570 Uncharacterized small protein [Function unknown]
Probab=25.29 E-value=1.4e+02 Score=24.87 Aligned_cols=35 Identities=31% Similarity=0.554 Sum_probs=24.5
Q ss_pred hHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhh
Q 005018 214 SIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (719)
Q Consensus 214 ~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~ 259 (719)
++.+++..+.| . ...-..|.-..-+||+|++++.+
T Consensus 20 ei~ea~n~Ps~---d--------d~~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 20 EIQEAMNSPSS---D--------DLAIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHhcCCCc---c--------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677775444 2 23445677788899999999875
No 177
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=25.26 E-value=24 Score=37.08 Aligned_cols=36 Identities=39% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHh
Q 005018 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARL 250 (719)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~L 250 (719)
+.-....|+.-.+.|-+||++|++ +.++|+.||+||
T Consensus 127 Q~T~I~dLrrlVe~L~aeNErLr~---------------------EnkqL~ae~arL 162 (243)
T PF08961_consen 127 QATKIADLRRLVEFLLAENERLRR---------------------ENKQLKAENARL 162 (243)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Confidence 333445567777777777777776 455788888888
No 178
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=25.12 E-value=1.5e+02 Score=31.45 Aligned_cols=47 Identities=21% Similarity=0.083 Sum_probs=30.7
Q ss_pred hhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhHh
Q 005018 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (719)
Q Consensus 197 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~~ 261 (719)
+....-..+.++++||++|++++. +.+....+...|++|.++++.+.
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~------------------~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELL------------------ELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 444456678889999999998654 22222233347788888887764
No 179
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.30 E-value=49 Score=30.85 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.1
Q ss_pred EeeccccChhHHHHhhhccccchhhh
Q 005018 650 TSVWLPVSPQRLFNFLRDERLRSEWD 675 (719)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd 675 (719)
.|+.++.||+.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57889999999999999988887776
No 180
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=24.28 E-value=91 Score=36.77 Aligned_cols=18 Identities=50% Similarity=0.728 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHhHHHHHH
Q 005018 239 EEQHLRIENARLKDELDR 256 (719)
Q Consensus 239 e~q~L~~ENa~Lk~el~r 256 (719)
|.++|+.||+.||++|+.
T Consensus 317 Ene~Lk~ENatLk~qL~~ 334 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDE 334 (655)
T ss_pred HHHHHHhhhHHHHHHHHH
Confidence 455666677777766654
No 181
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.19 E-value=58 Score=29.42 Aligned_cols=27 Identities=22% Similarity=0.494 Sum_probs=24.0
Q ss_pred EeeccccChhHHHHhhhccccchhhhh
Q 005018 650 TSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
.++-++.||++||++|.|..+..+|.-
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~~ 30 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWNP 30 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccCh
Confidence 456688999999999999999999973
No 182
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.10 E-value=2.5e+02 Score=29.23 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=10.6
Q ss_pred HHHHhHHHHHhhHhHHhhh
Q 005018 201 LRQENDKLRAENMSIRDAM 219 (719)
Q Consensus 201 l~~en~~L~~en~~l~e~~ 219 (719)
..+....|+++|++|++++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666544
No 183
>PRK00118 putative DNA-binding protein; Validated
Probab=23.89 E-value=1.9e+02 Score=26.97 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 141 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
+++.|...+...|.. .....++|+.+|+++.-|+.|...-|.+.|+..
T Consensus 18 L~ekqRevl~L~y~e-----g~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~~ 65 (104)
T PRK00118 18 LTEKQRNYMELYYLD-----DYSLGEIAEEFNVSRQAVYDNIKRTEKLLEDYE 65 (104)
T ss_pred CCHHHHHHHHHHHHc-----CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 566777777665543 234678999999999999999876666665433
No 184
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.38 E-value=2.3e+02 Score=24.46 Aligned_cols=20 Identities=40% Similarity=0.476 Sum_probs=10.6
Q ss_pred HHHHhHHHHHHHhhHhhhhcC
Q 005018 246 ENARLKDELDRVCALAGKFLG 266 (719)
Q Consensus 246 ENa~Lk~el~r~~~~~~~~~~ 266 (719)
|-..|.+ .+|+..+|.+.+|
T Consensus 53 ei~~l~~-~~rIe~~Ar~~lg 72 (85)
T TIGR02209 53 EVAELSR-HERIEKIAKKQLG 72 (85)
T ss_pred HHHHHcC-HHHHHHHHHHhcC
Confidence 3334443 4556667766555
No 185
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.33 E-value=2.3e+02 Score=29.45 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=28.9
Q ss_pred HhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHH
Q 005018 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (719)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r 256 (719)
......|+++|++|+.++..++... ..|..||..+++++..
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~---------------------~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKV---------------------DAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 3444558888888888888877633 3467788888877654
No 186
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.02 E-value=90 Score=27.73 Aligned_cols=18 Identities=44% Similarity=0.697 Sum_probs=11.9
Q ss_pred HHHHHHHHhHHHHHHHhh
Q 005018 242 HLRIENARLKDELDRVCA 259 (719)
Q Consensus 242 ~L~~ENa~Lk~el~r~~~ 259 (719)
.|..||++||.||+++.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ 21 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEA 21 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777777775443
No 187
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=22.11 E-value=2.5e+02 Score=25.38 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchh
Q 005018 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (719)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (719)
+..|+.+++..|..... .+.+|++-.+++-+++...
T Consensus 36 ~R~y~~~di~~l~~i~~-------------lr~~g~~l~~i~~~~~~~~ 71 (103)
T cd01106 36 YRLYTEEDLERLQQILF-------------LKELGFSLKEIKELLKDPS 71 (103)
T ss_pred ceeeCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHcCc
Confidence 44699999998866532 2455777777777766543
No 188
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=21.88 E-value=44 Score=31.81 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=22.6
Q ss_pred hhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCC
Q 005018 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGG 229 (719)
Q Consensus 198 ~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg 229 (719)
|++++.++..|++....+...++...|-.|-.
T Consensus 44 nqqLreQqk~L~e~i~~LE~RLRaGlCDRC~V 75 (120)
T PF10482_consen 44 NQQLREQQKTLHENIKVLENRLRAGLCDRCTV 75 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 45566666666666666777788888998865
No 189
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=21.85 E-value=67 Score=25.89 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHH
Q 005018 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQM 189 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~ 189 (719)
..+|+.+.+.|.-...-. ...++|..++++++.|+.+..+=+.|.
T Consensus 2 ~~LT~~E~~vl~~l~~G~------~~~eIA~~l~is~~tV~~~~~~i~~Kl 46 (58)
T PF00196_consen 2 PSLTERELEVLRLLAQGM------SNKEIAEELGISEKTVKSHRRRIMKKL 46 (58)
T ss_dssp GSS-HHHHHHHHHHHTTS-------HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHhcC------CcchhHHhcCcchhhHHHHHHHHHHHh
Confidence 358899999998776553 378999999999999998765544443
No 190
>PHA03162 hypothetical protein; Provisional
Probab=21.83 E-value=2.6e+02 Score=27.34 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=22.2
Q ss_pred hhhhHHHHHhHHHHHhhHhHHhhhcCC
Q 005018 196 HENSLLRQENDKLRAENMSIRDAMRNP 222 (719)
Q Consensus 196 ~e~~~l~~en~~L~~en~~l~e~~~~~ 222 (719)
..-..|.+++.+|+-||+.|+..+...
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678899999999999999999643
No 191
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=21.68 E-value=5.2e+02 Score=25.34 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=25.8
Q ss_pred HhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhHh
Q 005018 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (719)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~~ 261 (719)
+.++..|.++.++|+.||.+++ .|-..+|..++++...+
T Consensus 80 E~~k~~L~qqv~~L~~e~s~~~----------------------------~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEENSRLR----------------------------RELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHhhh
Confidence 3455666777777777665544 56677888888876554
No 192
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=21.24 E-value=45 Score=26.54 Aligned_cols=8 Identities=63% Similarity=1.282 Sum_probs=6.2
Q ss_pred HHHHHHHH
Q 005018 552 FGAQRWVA 559 (719)
Q Consensus 552 fGA~rWla 559 (719)
-||+|||+
T Consensus 38 ~garrwl~ 45 (49)
T PF07151_consen 38 SGARRWLA 45 (49)
T ss_pred hhhhHHHh
Confidence 37899976
No 193
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.12 E-value=2.5e+02 Score=22.64 Aligned_cols=38 Identities=34% Similarity=0.528 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHH
Q 005018 185 RRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDE 253 (719)
Q Consensus 185 RRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~e 253 (719)
+|.+.| ++.....+..+...|..+|..|.. +++.|+.|
T Consensus 17 ~r~R~r---kk~~~~~le~~~~~L~~en~~L~~----------------------------~i~~L~~E 54 (54)
T PF07716_consen 17 RRSRQR---KKQREEELEQEVQELEEENEQLRQ----------------------------EIAQLERE 54 (54)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHhcc
No 194
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.04 E-value=1.8e+02 Score=27.18 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=7.2
Q ss_pred HHHHHHHHHhHHH
Q 005018 241 QHLRIENARLKDE 253 (719)
Q Consensus 241 q~L~~ENa~Lk~e 253 (719)
.+|++||+.||+.
T Consensus 88 ~~L~~E~diLKKa 100 (121)
T PRK09413 88 GKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 3455566666654
No 195
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=20.76 E-value=69 Score=29.49 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=25.4
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
..++.++.||++||+.+.|..+..+|--
T Consensus 4 ~~~i~i~a~~e~Vw~~~td~~~~~~W~~ 31 (145)
T cd08898 4 ERTILIDAPRERVWRALTDPEHFGQWFG 31 (145)
T ss_pred EEEEEecCCHHHHHHHhcChhhhhhccc
Confidence 4678899999999999999999999964
No 196
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.68 E-value=64 Score=30.40 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=25.3
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
.+++-++.||+.||+.+.|..+-.+|.-
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~~~~~w~~ 31 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAESWPDWWP 31 (146)
T ss_pred eEEEEecCCHHHHHHHHhChhhcchhhh
Confidence 3677888999999999999999999985
No 197
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.47 E-value=88 Score=31.92 Aligned_cols=36 Identities=33% Similarity=0.408 Sum_probs=25.3
Q ss_pred CCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHh
Q 005018 223 ICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (719)
Q Consensus 223 ~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~ 258 (719)
.||.||.....-+-+..-..|..+-.+|++++++..
T Consensus 134 ~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~~ 169 (176)
T COG1675 134 TCPKCGEDLEEYDSSEEIEELESELDELEEELERND 169 (176)
T ss_pred CCCCCCchhhhccchHHHHHHHHHHHHHHHHHhccc
Confidence 699999988766666666666666666666666544
No 198
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=20.24 E-value=1.4e+02 Score=29.42 Aligned_cols=56 Identities=20% Similarity=0.419 Sum_probs=26.8
Q ss_pred eEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecCCeEEEEEEeccCc
Q 005018 434 ATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (719)
Q Consensus 434 ~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~g~waVvDvSld~~ 494 (719)
..++|++.-..+..+|.--.+.+++....- .| .-+-|--...+|.|-|+||.++++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~~g-~~----i~v~y~l~~~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTEIISKDG-QP----IPVDYRLRKKDGKWKIYDVIIEGV 140 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEEEEET-T-EE----EEEEEEEEEETTEEEEEEEEETTE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEEEEcCCC-Cc----EEEEEEEEEcCCCeEEEEEEEcce
Confidence 345555444433323333444455444443 33 333343333889999999999976
No 199
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=20.16 E-value=36 Score=29.86 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=28.0
Q ss_pred HHHhhhCCCCChHHHHHHHHHhcccccceeccccc
Q 005018 150 ESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (719)
Q Consensus 150 E~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQN 184 (719)
+..|..++|-......++|+.+|+++..|+.|+.+
T Consensus 21 r~af~L~R~~eGlS~kEIAe~LGIS~~TVk~~l~~ 55 (73)
T TIGR03879 21 EAAAALAREEAGKTASEIAEELGRTEQTVRNHLKG 55 (73)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 44566666666677899999999999999999764
No 200
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.16 E-value=3.9e+02 Score=25.28 Aligned_cols=45 Identities=22% Similarity=0.153 Sum_probs=31.2
Q ss_pred hHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhHhhhh
Q 005018 199 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKF 264 (719)
Q Consensus 199 ~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~~~~~ 264 (719)
..+.+....+.++-..|++ +...|..||++|+-|-+.++....+.
T Consensus 11 ~~le~~l~~l~~el~~LK~---------------------~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKK---------------------QLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555556666666665 44568889999999988888777654
Done!