Query 005018
Match_columns 719
No_of_seqs 406 out of 1679
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:53:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 9.7E-20 3.3E-24 183.6 17.4 201 337-568 21-229 (231)
2 3a01_A Homeodomain-containing 99.7 4.5E-18 1.5E-22 150.8 5.6 77 130-206 13-89 (93)
3 2dmt_A Homeobox protein BARH-l 99.7 7.4E-18 2.5E-22 145.1 6.0 63 130-192 13-75 (80)
4 2da3_A Alpha-fetoprotein enhan 99.7 8.8E-18 3E-22 144.0 5.1 63 131-193 14-76 (80)
5 2kt0_A Nanog, homeobox protein 99.7 1.6E-17 5.4E-22 143.9 5.8 64 130-193 18-81 (84)
6 1nk2_P Homeobox protein VND; h 99.7 2.6E-17 8.7E-22 140.7 6.3 66 131-196 6-71 (77)
7 2dmq_A LIM/homeobox protein LH 99.7 2.1E-17 7E-22 142.0 5.5 66 132-197 5-70 (80)
8 2cue_A Paired box protein PAX6 99.7 3.2E-17 1.1E-21 141.1 6.6 65 132-196 5-69 (80)
9 1wh5_A ZF-HD homeobox family p 99.7 1.4E-17 4.9E-22 143.9 4.0 61 131-191 14-78 (80)
10 1puf_A HOX-1.7, homeobox prote 99.7 8E-17 2.7E-21 137.7 7.3 64 132-195 11-74 (77)
11 2dmu_A Homeobox protein goosec 99.7 3.9E-17 1.3E-21 137.0 5.2 62 132-193 5-66 (70)
12 2dms_A Homeobox protein OTX2; 99.7 2.2E-17 7.5E-22 142.0 3.6 63 132-194 5-67 (80)
13 1wh7_A ZF-HD homeobox family p 99.7 2.6E-17 8.8E-22 142.4 4.0 60 131-191 14-78 (80)
14 2e1o_A Homeobox protein PRH; D 99.7 5.9E-17 2E-21 136.0 5.9 62 132-193 5-66 (70)
15 1fjl_A Paired protein; DNA-bin 99.7 4.9E-17 1.7E-21 140.1 5.6 64 131-194 15-78 (81)
16 2cra_A Homeobox protein HOX-B1 99.7 2.8E-17 9.6E-22 137.9 3.8 62 132-193 5-66 (70)
17 2h1k_A IPF-1, pancreatic and d 99.7 4.5E-17 1.5E-21 134.0 4.8 60 133-192 2-61 (63)
18 2vi6_A Homeobox protein nanog; 99.7 1.6E-17 5.5E-22 136.1 1.8 60 133-192 2-61 (62)
19 2da2_A Alpha-fetoprotein enhan 99.6 4.9E-17 1.7E-21 136.2 4.3 63 131-193 4-66 (70)
20 1zq3_P PRD-4, homeotic bicoid 99.6 6.8E-17 2.3E-21 134.9 4.9 63 134-196 2-64 (68)
21 2hdd_A Protein (engrailed home 99.6 5E-17 1.7E-21 132.8 3.8 58 134-191 3-60 (61)
22 2da1_A Alpha-fetoprotein enhan 99.6 6.3E-17 2.2E-21 135.5 4.5 62 132-193 5-66 (70)
23 2djn_A Homeobox protein DLX-5; 99.6 4.6E-17 1.6E-21 136.6 3.3 61 132-192 5-65 (70)
24 1ig7_A Homeotic protein MSX-1; 99.6 8.7E-17 3E-21 129.8 4.8 57 135-191 1-57 (58)
25 1ahd_P Antennapedia protein mu 99.6 9.4E-17 3.2E-21 134.2 4.8 61 134-194 2-62 (68)
26 1yz8_P Pituitary homeobox 2; D 99.6 5.1E-17 1.8E-21 135.6 2.9 62 133-194 2-63 (68)
27 1jgg_A Segmentation protein EV 99.6 1.2E-16 4.2E-21 130.0 4.1 58 135-192 2-59 (60)
28 2da4_A Hypothetical protein DK 99.6 1.1E-16 3.6E-21 137.7 3.9 61 132-192 6-70 (80)
29 2l7z_A Homeobox protein HOX-A1 99.6 1.6E-16 5.5E-21 134.5 4.9 62 132-193 5-66 (73)
30 1b8i_A Ultrabithorax, protein 99.6 7.8E-17 2.7E-21 139.2 2.9 62 132-193 18-79 (81)
31 1ftt_A TTF-1 HD, thyroid trans 99.6 1.8E-16 6.1E-21 132.4 4.7 61 134-194 2-62 (68)
32 1bw5_A ISL-1HD, insulin gene e 99.6 1.1E-16 3.8E-21 132.7 3.1 60 133-192 2-61 (66)
33 3rkq_A Homeobox protein NKX-2. 99.6 2E-16 6.9E-21 127.2 4.1 57 134-190 2-58 (58)
34 3nar_A ZHX1, zinc fingers and 99.6 1.5E-16 5.2E-21 141.6 3.6 64 132-195 23-86 (96)
35 2r5y_A Homeotic protein sex co 99.6 1.1E-16 3.6E-21 140.2 2.3 61 132-192 26-86 (88)
36 2hi3_A Homeodomain-only protei 99.6 3.8E-16 1.3E-20 132.2 5.4 59 135-193 3-62 (73)
37 3a02_A Homeobox protein arista 99.6 2E-16 6.7E-21 128.8 3.4 57 137-193 2-58 (60)
38 1uhs_A HOP, homeodomain only p 99.6 3.5E-16 1.2E-20 131.9 5.1 59 135-193 2-61 (72)
39 1akh_A Protein (mating-type pr 99.6 1.6E-16 5.6E-21 129.5 2.9 59 132-190 3-61 (61)
40 2m0c_A Homeobox protein arista 99.6 3.3E-16 1.1E-20 132.5 4.8 63 131-193 6-68 (75)
41 3a03_A T-cell leukemia homeobo 99.6 3.2E-16 1.1E-20 126.1 4.2 54 139-192 2-55 (56)
42 2da5_A Zinc fingers and homeob 99.6 4.6E-16 1.6E-20 132.5 5.0 59 136-194 9-67 (75)
43 2cuf_A FLJ21616 protein; homeo 99.6 6.6E-16 2.3E-20 137.1 5.8 65 131-195 4-83 (95)
44 1b72_A Protein (homeobox prote 99.6 3.6E-16 1.2E-20 139.3 4.0 63 132-194 32-94 (97)
45 2k40_A Homeobox expressed in E 99.6 4.5E-16 1.6E-20 129.4 4.1 59 135-193 2-60 (67)
46 1x2n_A Homeobox protein pknox1 99.6 1.1E-15 3.6E-20 129.2 5.7 62 132-193 5-69 (73)
47 2ecc_A Homeobox and leucine zi 99.6 8.6E-16 2.9E-20 131.6 4.6 57 138-194 7-63 (76)
48 2ly9_A Zinc fingers and homeob 99.6 5.9E-16 2E-20 131.0 3.1 60 134-193 6-65 (74)
49 2dn0_A Zinc fingers and homeob 99.6 8.1E-16 2.8E-20 131.1 3.6 59 135-193 9-67 (76)
50 2dmn_A Homeobox protein TGIF2L 99.6 1.3E-15 4.5E-20 132.2 4.5 64 132-195 5-71 (83)
51 1puf_B PRE-B-cell leukemia tra 99.6 1.1E-15 3.8E-20 129.1 3.7 61 135-195 2-65 (73)
52 2ecb_A Zinc fingers and homeob 99.6 5.1E-16 1.8E-20 136.9 1.6 56 139-194 16-71 (89)
53 1e3o_C Octamer-binding transcr 99.6 8.4E-16 2.9E-20 148.7 2.8 62 131-192 98-159 (160)
54 1b72_B Protein (PBX1); homeodo 99.5 1.9E-15 6.6E-20 131.6 4.1 61 135-195 2-65 (87)
55 2xsd_C POU domain, class 3, tr 99.5 7.5E-16 2.6E-20 149.9 1.4 64 131-194 96-159 (164)
56 1k61_A Mating-type protein alp 99.5 2.2E-15 7.7E-20 122.4 3.8 55 137-191 1-58 (60)
57 1du6_A PBX1, homeobox protein 99.5 1.3E-15 4.5E-20 125.4 2.1 58 134-191 3-63 (64)
58 1au7_A Protein PIT-1, GHF-1; c 99.5 1.1E-15 3.8E-20 146.0 1.7 62 131-192 84-145 (146)
59 2cqx_A LAG1 longevity assuranc 99.5 1.4E-15 4.8E-20 128.9 1.9 57 135-191 9-66 (72)
60 2dmp_A Zinc fingers and homeob 99.5 4.7E-15 1.6E-19 130.4 5.4 56 138-193 17-72 (89)
61 2da6_A Hepatocyte nuclear fact 99.5 6.5E-15 2.2E-19 132.7 6.3 65 131-195 3-88 (102)
62 1wi3_A DNA-binding protein SAT 99.5 5.1E-15 1.7E-19 123.6 4.6 60 131-190 4-64 (71)
63 1mnm_C Protein (MAT alpha-2 tr 99.5 4.7E-15 1.6E-19 129.5 4.5 58 133-190 26-86 (87)
64 1le8_B Mating-type protein alp 99.5 4.8E-15 1.6E-19 128.5 3.7 59 135-193 3-64 (83)
65 3d1n_I POU domain, class 6, tr 99.5 6.6E-15 2.2E-19 141.1 4.6 60 132-191 91-150 (151)
66 2l9r_A Homeobox protein NKX-3. 99.5 1.9E-15 6.4E-20 127.3 -0.1 56 139-194 9-64 (69)
67 3nau_A Zinc fingers and homeob 99.5 9.3E-15 3.2E-19 121.7 3.7 53 141-193 11-63 (66)
68 1lfb_A Liver transcription fac 99.5 3.9E-15 1.3E-19 133.6 1.0 64 131-194 6-90 (99)
69 1x2m_A LAG1 longevity assuranc 99.5 5.6E-15 1.9E-19 122.7 1.3 49 143-191 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.5 1.8E-14 6.3E-19 138.7 3.6 61 132-192 94-154 (155)
71 2e19_A Transcription factor 8; 99.5 1.5E-14 5.1E-19 119.9 2.2 52 140-191 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 2.5E-14 8.4E-19 138.6 2.2 63 131-193 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.4 8.4E-14 2.9E-18 116.2 2.0 58 140-197 4-64 (67)
74 1ic8_A Hepatocyte nuclear fact 99.3 4.1E-13 1.4E-17 133.9 1.5 61 131-191 112-193 (194)
75 2lk2_A Homeobox protein TGIF1; 99.2 9.7E-12 3.3E-16 109.5 4.3 59 139-197 10-71 (89)
76 1em2_A MLN64 protein; beta bar 99.2 3.1E-10 1E-14 114.1 15.5 200 337-568 20-226 (229)
77 3p0l_A Steroidogenic acute reg 99.2 2.3E-10 8E-15 114.5 13.5 193 340-566 12-213 (221)
78 2pso_A STAR-related lipid tran 99.1 2E-10 6.8E-15 117.2 12.1 192 343-566 33-226 (237)
79 2h8r_A Hepatocyte nuclear fact 99.1 1.6E-11 5.5E-16 124.2 3.6 60 130-189 138-218 (221)
80 2da7_A Zinc finger homeobox pr 99.1 3.4E-11 1.2E-15 101.1 3.0 46 143-188 14-59 (71)
81 1mh3_A Maltose binding-A1 home 99.0 3.2E-11 1.1E-15 129.5 -0.0 56 135-190 366-421 (421)
82 1ln1_A PC-TP, phosphatidylchol 98.9 8.4E-09 2.9E-13 101.9 13.1 151 398-568 53-210 (214)
83 1jss_A Stard4, cholesterol-reg 98.8 1.7E-08 5.8E-13 101.4 12.5 149 398-566 68-222 (224)
84 3fo5_A Thioesterase, adipose a 98.7 6.5E-08 2.2E-12 100.3 10.7 128 400-541 91-222 (258)
85 3qsz_A STAR-related lipid tran 98.5 7.5E-07 2.6E-11 86.4 12.8 152 398-567 28-179 (189)
86 2nzz_A Penetratin conjugated G 98.4 2E-08 6.7E-13 74.6 -0.7 22 176-197 1-22 (37)
87 2e3n_A Lipid-transfer protein 98.3 5.4E-06 1.9E-10 84.5 12.4 200 340-568 24-247 (255)
88 2d4r_A Hypothetical protein TT 95.0 0.13 4.4E-06 45.3 10.0 139 402-568 7-145 (147)
89 2r55_A STAR-related lipid tran 93.4 0.15 5.2E-06 50.6 7.5 81 586-677 18-100 (231)
90 3tl1_A WHIE ORF VI, polyketide 90.8 2.3 7.8E-05 40.3 11.9 142 400-570 6-149 (159)
91 3tfz_A Cyclase; helix-GRIP, BE 89.8 2.3 7.7E-05 40.2 11.0 145 400-570 8-162 (172)
92 3tvq_A Multifunctional cyclase 89.0 3.8 0.00013 39.2 12.0 144 401-571 7-150 (169)
93 2ys9_A Homeobox and leucine zi 88.5 0.2 6.9E-06 42.0 2.2 39 145-183 17-55 (70)
94 1t17_A Conserved hypothetical 88.0 1 3.4E-05 41.1 6.9 140 401-568 6-145 (148)
95 1jss_A Stard4, cholesterol-reg 87.8 0.74 2.5E-05 45.6 6.3 73 592-677 26-98 (224)
96 3p0l_A Steroidogenic acute reg 87.6 1.2 4E-05 43.9 7.6 77 590-677 10-87 (221)
97 3qsz_A STAR-related lipid tran 87.3 0.43 1.5E-05 45.6 4.1 56 613-677 3-58 (189)
98 1ln1_A PC-TP, phosphatidylchol 86.9 0.33 1.1E-05 47.3 3.1 58 611-677 26-84 (214)
99 2jn6_A Protein CGL2762, transp 86.5 0.16 5.5E-06 43.8 0.5 42 139-183 4-45 (97)
100 3fo5_A Thioesterase, adipose a 83.8 4.2 0.00014 41.8 9.7 107 554-677 10-119 (258)
101 2jee_A YIIU; FTSZ, septum, coi 83.0 2.3 8E-05 36.6 6.1 54 196-263 20-77 (81)
102 3p9v_A Uncharacterized protein 79.8 13 0.00044 34.6 10.8 139 401-565 11-149 (161)
103 2e3n_A Lipid-transfer protein 78.2 2.1 7.1E-05 43.1 5.1 76 592-677 28-105 (255)
104 1ci6_A Transcription factor AT 75.6 6.6 0.00023 32.0 6.4 41 194-255 21-61 (63)
105 2j5u_A MREC protein; bacterial 74.6 1.1 3.9E-05 45.9 2.0 17 239-255 44-60 (255)
106 2wt7_B Transcription factor MA 74.1 8.2 0.00028 33.9 7.0 67 172-259 17-83 (90)
107 1em2_A MLN64 protein; beta bar 73.3 3.7 0.00013 40.4 5.3 77 590-677 21-98 (229)
108 2pcs_A Conserved protein; stru 71.9 57 0.002 29.4 12.9 118 402-546 8-127 (162)
109 1t2k_D Cyclic-AMP-dependent tr 66.7 17 0.00056 29.2 6.8 40 194-254 20-59 (61)
110 1hjb_A Ccaat/enhancer binding 66.6 11 0.00036 32.9 6.0 19 199-217 39-57 (87)
111 1jnm_A Proto-oncogene C-JUN; B 60.1 12 0.0004 30.2 4.8 23 195-217 21-43 (62)
112 1l8d_A DNA double-strand break 58.3 12 0.0004 33.1 5.0 12 221-232 47-58 (112)
113 3ra3_B P2F; coiled coil domain 54.7 7.7 0.00026 26.2 2.3 18 241-258 3-20 (28)
114 1gu4_A CAAT/enhancer binding p 52.0 24 0.00082 30.1 5.6 16 201-216 41-56 (78)
115 2wt7_A Proto-oncogene protein 51.4 39 0.0013 27.2 6.6 26 194-219 21-46 (63)
116 2pso_A STAR-related lipid tran 49.8 21 0.0007 35.8 5.7 57 611-678 48-105 (237)
117 2qpv_A Uncharacterized protein 47.2 12 0.0004 35.4 3.3 30 647-676 28-57 (156)
118 2glo_A Brinker CG9653-PA; prot 46.5 13 0.00046 28.8 3.0 44 139-183 4-47 (59)
119 3s9g_A Protein hexim1; cyclin 45.6 7.7 0.00026 34.5 1.5 56 193-255 34-89 (104)
120 3a5t_A Transcription factor MA 44.7 2.8 9.4E-05 38.0 -1.5 66 172-258 27-92 (107)
121 1gd2_E Transcription factor PA 44.4 39 0.0013 28.2 5.6 13 245-257 50-62 (70)
122 2elh_A CG11849-PA, LD40883P; s 44.1 15 0.0005 30.9 3.1 43 135-182 17-59 (87)
123 1uii_A Geminin; human, DNA rep 42.8 51 0.0017 28.5 6.1 21 242-262 57-77 (83)
124 1hlv_A CENP-B, major centromer 42.2 20 0.0007 31.7 3.9 49 137-188 4-52 (131)
125 3he5_B Synzip2; heterodimeric 42.1 69 0.0024 24.4 6.0 41 199-260 6-46 (52)
126 2d4r_A Hypothetical protein TT 40.6 12 0.00041 32.3 2.1 28 649-676 5-32 (147)
127 3m91_A Proteasome-associated A 38.5 63 0.0022 25.4 5.6 38 200-258 13-50 (51)
128 1jko_C HIN recombinase, DNA-in 36.9 15 0.0005 26.6 1.8 42 141-187 6-47 (52)
129 2pcs_A Conserved protein; stru 36.5 12 0.00042 34.0 1.5 28 648-675 5-32 (162)
130 2ns9_A Hypothetical protein AP 35.7 14 0.00049 33.1 1.8 29 647-675 14-42 (157)
131 3p51_A Uncharacterized protein 35.5 1.4E+02 0.0047 27.9 8.7 111 402-535 7-118 (160)
132 3m48_A General control protein 35.0 34 0.0012 24.6 3.2 22 240-261 9-30 (33)
133 1gd2_E Transcription factor PA 34.2 66 0.0023 26.8 5.4 17 240-256 52-68 (70)
134 3m9b_A Proteasome-associated A 33.0 42 0.0014 34.5 4.9 18 241-258 78-95 (251)
135 2yy0_A C-MYC-binding protein; 32.8 58 0.002 25.7 4.6 16 240-255 21-36 (53)
136 2le1_A Uncharacterized protein 32.7 1.7E+02 0.0058 26.1 8.6 37 402-442 7-43 (151)
137 3ggn_A Uncharacterized protein 32.3 23 0.00079 32.5 2.7 30 647-676 5-34 (155)
138 1t17_A Conserved hypothetical 32.3 21 0.00071 32.2 2.3 29 649-677 5-33 (148)
139 3hug_A RNA polymerase sigma fa 31.6 38 0.0013 28.4 3.7 49 140-193 37-85 (92)
140 2leq_A Uncharacterized protein 31.2 28 0.00095 30.5 2.9 28 647-674 6-33 (146)
141 1tc3_C Protein (TC3 transposas 29.6 33 0.0011 24.1 2.6 40 140-184 5-44 (51)
142 3q6a_A Uncharacterized protein 29.4 30 0.001 30.6 2.9 27 649-675 4-30 (135)
143 1x53_A Activator of 90 kDa hea 28.9 28 0.00097 31.3 2.6 28 648-675 13-40 (145)
144 2dgc_A Protein (GCN4); basic d 28.8 66 0.0022 26.1 4.5 41 185-256 22-62 (63)
145 1deb_A APC protein, adenomatou 28.8 51 0.0017 25.9 3.5 15 242-256 14-28 (54)
146 3mzy_A RNA polymerase sigma-H 28.6 42 0.0014 29.8 3.7 48 140-193 109-156 (164)
147 2ns9_A Hypothetical protein AP 28.0 3.1E+02 0.01 24.0 10.5 26 404-429 20-45 (157)
148 2j5u_A MREC protein; bacterial 27.9 35 0.0012 34.8 3.3 19 243-261 41-59 (255)
149 1wlq_A Geminin; coiled-coil; 2 27.9 1.1E+02 0.0038 26.4 5.8 17 245-261 52-68 (83)
150 2rgt_A Fusion of LIM/homeobox 26.9 2.1 7E-05 40.7 -5.7 31 132-162 134-164 (169)
151 3tfz_A Cyclase; helix-GRIP, BE 26.4 36 0.0012 31.8 2.9 30 647-676 6-35 (172)
152 1s7o_A Hypothetical UPF0122 pr 25.9 82 0.0028 28.0 5.0 49 140-193 22-70 (113)
153 3oja_A Leucine-rich immune mol 25.4 1.4E+02 0.0047 32.4 7.8 23 238-260 442-464 (487)
154 2oa5_A Hypothetical protein BQ 25.4 1.3E+02 0.0044 27.3 6.0 25 197-221 9-33 (110)
155 1hjb_A Ccaat/enhancer binding 24.5 2.6E+02 0.0087 24.2 7.6 16 242-257 47-62 (87)
156 1xsv_A Hypothetical UPF0122 pr 23.7 87 0.003 27.6 4.7 51 140-195 25-75 (113)
157 3a2a_A Voltage-gated hydrogen 23.7 1.5E+02 0.0052 23.7 5.4 25 239-263 26-50 (58)
158 1xn6_A Hypothetical protein BC 23.1 30 0.001 30.8 1.6 27 649-675 11-37 (143)
159 2o8x_A Probable RNA polymerase 23.1 34 0.0011 26.6 1.7 46 140-190 15-60 (70)
160 1z94_A Conserved hypothetical 23.0 30 0.001 30.4 1.6 26 650-675 7-32 (147)
161 2kew_A Uncharacterized protein 22.8 32 0.0011 31.3 1.8 27 648-674 12-38 (152)
162 1p4w_A RCSB; solution structur 22.8 55 0.0019 28.4 3.2 40 139-184 33-72 (99)
163 3ggn_A Uncharacterized protein 22.7 4.2E+02 0.014 23.8 12.2 135 402-572 9-144 (155)
164 2le1_A Uncharacterized protein 22.4 52 0.0018 29.6 3.1 28 648-675 4-31 (151)
165 1go4_E MAD1 (mitotic arrest de 22.2 2.5E+02 0.0087 24.9 7.3 24 239-262 69-92 (100)
166 3f08_A Uncharacterized protein 22.1 2.9E+02 0.0098 25.0 8.2 123 401-568 6-139 (146)
167 2lcg_A Uncharacterized protein 21.6 33 0.0011 30.6 1.6 26 649-674 4-29 (142)
168 3s9g_A Protein hexim1; cyclin 21.5 97 0.0033 27.6 4.4 20 197-216 66-85 (104)
169 2l8o_A Uncharacterized protein 20.6 36 0.0012 30.7 1.6 25 650-674 6-30 (144)
170 2lgh_A Uncharacterized protein 20.2 36 0.0012 30.7 1.5 26 649-674 4-29 (144)
171 3ulq_B Transcriptional regulat 20.1 60 0.0021 27.6 2.8 41 137-183 26-66 (90)
172 2wvr_A Geminin; DNA replicatio 20.0 1.6E+02 0.0054 29.4 6.0 31 242-272 133-166 (209)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.83 E-value=9.7e-20 Score=183.56 Aligned_cols=201 Identities=16% Similarity=0.204 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHh
Q 005018 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (719)
Q Consensus 337 k~~~~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l 416 (719)
++.++++|++||+||+++++. +..|....+. ++.++|.+.. .+....+-|..++|.+++.+|++.|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~-~~~W~~~~~~---------~gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRD-TAGWKICREG---------NGVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CSSCEEEECC---------SSEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeC---------CCEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 788999999999999999975 4689864332 1233443221 1233578899999999999999999
Q ss_pred cC-----hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehh-hhhcccccccCceeeEEeeeceecCCeEEEEEEe
Q 005018 417 MD-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHA-ELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVS 490 (719)
Q Consensus 417 mD-----~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~a-Elqv~SPLVp~Re~~fLRyckq~~~g~waVvDvS 490 (719)
|+ +.+|-+.|. .+++++.|+. + -.++|. ....++++|++|||.++||+++.++|.|+|+.+|
T Consensus 87 ~~~d~~~r~~Wd~~~~----~~~vle~i~~------~--~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~S 154 (231)
T 2r55_A 87 KPAVGGLRVKWDENVT----GFEIIQSITD------T--LCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATH 154 (231)
T ss_dssp CC--CCSHHHHCTTCS----EEEEEEECSS------S--EEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HhhCcchhhhhccccc----eeEEEEEcCC------C--EEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEe
Confidence 77 889987754 5788888752 1 223442 2234567999999999999999999999999999
Q ss_pred ccCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 005018 491 IDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 568 (719)
Q Consensus 491 ld~~~~~~~~~~~~~~rr~PSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cerl 568 (719)
++.-. .+..+.++|+..++|||+||+++ +|.|+|||+.|++..-+ +| +.++++.++.++..|++.|+++|+.+
T Consensus 155 v~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 155 VEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp CCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 98432 22223589999999999999998 78999999999998765 55 67899999999999999999999853
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.71 E-value=4.5e-18 Score=150.75 Aligned_cols=77 Identities=32% Similarity=0.428 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhhhhHHHHHhH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~ 206 (719)
..+++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..+.+...+++.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999887766666655543
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.4e-18 Score=145.08 Aligned_cols=63 Identities=29% Similarity=0.410 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
..++.+|.|+.||.+|+..||..|+.++||+..+|.+||++|||+++||++||||||+|+|+.
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 345678889999999999999999999999999999999999999999999999999999964
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=8.8e-18 Score=144.01 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
..++||.|++||.+|+..||..|..++||+..++.+||++|||+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 356788899999999999999999999999999999999999999999999999999999753
No 5
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=143.93 Aligned_cols=64 Identities=30% Similarity=0.302 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
...+++|.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999999753
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.68 E-value=2.6e-17 Score=140.74 Aligned_cols=66 Identities=30% Similarity=0.385 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHh
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (719)
.++++|.|++||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|+.+...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 346678899999999999999999999999999999999999999999999999999999876654
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=141.97 Aligned_cols=66 Identities=27% Similarity=0.490 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhh
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (719)
.++||.|++||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|++..+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999999999998765543
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.2e-17 Score=141.12 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHh
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (719)
.+.+|.|++||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|++++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 35678889999999999999999999999999999999999999999999999999999876553
No 9
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=1.4e-17 Score=143.86 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh----CCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKE----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~----~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
.+++||+|+.||.+|+..||..|+. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3567888999999999999999999 999999999999999999999999999999999874
No 10
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.66 E-value=8e-17 Score=137.66 Aligned_cols=64 Identities=36% Similarity=0.432 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
++.+|+|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|+..+.
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788999999999999999999999999999999999999999999999999999987654
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-17 Score=136.95 Aligned_cols=62 Identities=29% Similarity=0.556 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.+.+|.|++||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34577889999999999999999999999999999999999999999999999999999753
No 12
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=2.2e-17 Score=142.03 Aligned_cols=63 Identities=29% Similarity=0.496 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
.+.||+|++||.+|+..||..|+.++||+..+|.+||.+|+|+++||++||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 456888999999999999999999999999999999999999999999999999999997654
No 13
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.66 E-value=2.6e-17 Score=142.38 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh-----CCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKE-----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~-----~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
..++||.|+.||.+|+..|| .|.. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678889999999999999 7999 999999999999999999999999999999999874
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=5.9e-17 Score=135.96 Aligned_cols=62 Identities=35% Similarity=0.420 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.+.+++|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34577889999999999999999999999999999999999999999999999999999753
No 15
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.66 E-value=4.9e-17 Score=140.13 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
.++++|.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4566788999999999999999999999999999999999999999999999999999998654
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2.8e-17 Score=137.92 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.+.||+|++||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45678889999999999999999999999999999999999999999999999999999743
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.66 E-value=4.5e-17 Score=133.97 Aligned_cols=60 Identities=35% Similarity=0.467 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 133 kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
+.||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 357788999999999999999999999999999999999999999999999999999975
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.65 E-value=1.6e-17 Score=136.12 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 133 kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
+++|.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457789999999999999999999999999999999999999999999999999999974
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-17 Score=136.21 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
..+++++|++||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 345678899999999999999999999999999999999999999999999999999999743
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=6.8e-17 Score=134.93 Aligned_cols=63 Identities=37% Similarity=0.520 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHh
Q 005018 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (719)
Q Consensus 134 kkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~ 196 (719)
+||.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 477889999999999999999999999999999999999999999999999999999877654
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.65 E-value=5e-17 Score=132.77 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 134 kkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
+||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5778899999999999999999999999999999999999999999999999999986
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=6.3e-17 Score=135.54 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.+.+|+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678899999999999999999999999999999999999999999999999999999753
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.6e-17 Score=136.61 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
.+.+|+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4568889999999999999999999999999999999999999999999999999999864
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=8.7e-17 Score=129.82 Aligned_cols=57 Identities=37% Similarity=0.511 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999986
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.64 E-value=9.4e-17 Score=134.18 Aligned_cols=61 Identities=36% Similarity=0.517 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 134 kkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
+||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4778899999999999999999999999999999999999999999999999999998653
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.64 E-value=5.1e-17 Score=135.59 Aligned_cols=62 Identities=31% Similarity=0.541 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 133 kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
+++|.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999997654
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1.2e-16 Score=130.01 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5778999999999999999999999999999999999999999999999999999974
No 28
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=137.74 Aligned_cols=61 Identities=11% Similarity=0.235 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhC----CCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKEC----PHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~----~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
.++||.|+.||.+|+..||..|+.+ +||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 4668889999999999999999999 999999999999999999999999999999999974
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.62 E-value=1.6e-16 Score=134.52 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.+.+|+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999754
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.62 E-value=7.8e-17 Score=139.17 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
+++||.|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 35678899999999999999999999999999999999999999999999999999999753
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.62 E-value=1.8e-16 Score=132.40 Aligned_cols=61 Identities=38% Similarity=0.510 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 134 kkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
++|+|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5778899999999999999999999999999999999999999999999999999997654
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.62 E-value=1.1e-16 Score=132.72 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 133 kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
++||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 467889999999999999999999999999999999999999999999999999999864
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.61 E-value=2e-16 Score=127.16 Aligned_cols=57 Identities=39% Similarity=0.493 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHH
Q 005018 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (719)
Q Consensus 134 kkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (719)
++|.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467789999999999999999999999999999999999999999999999999986
No 34
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=141.55 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
...+|+|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|+++.+
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 3456788999999999999999999999999999999999999999999999999999986543
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.61 E-value=1.1e-16 Score=140.22 Aligned_cols=61 Identities=34% Similarity=0.494 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
++.||+|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3567888999999999999999999999999999999999999999999999999999974
No 36
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=3.8e-16 Score=132.17 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-CCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
+++|++||.+|+..||..|+. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999995 99999999999999999999999999999999999865
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.61 E-value=2e-16 Score=128.84 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 468899999999999999999999999999999999999999999999999999765
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=3.5e-16 Score=131.92 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-CCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.++|++||.+|+..||..|+. ++||+..+|.+||+++||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 456789999999999999996 99999999999999999999999999999999999855
No 39
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.61 E-value=1.6e-16 Score=129.47 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (719)
.+++++|++||.+|+..||..|..++||+..++.+||.++||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678889999999999999999999999999999999999999999999999999975
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=3.3e-16 Score=132.47 Aligned_cols=63 Identities=30% Similarity=0.514 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.++++|.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999753
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.60 E-value=3.2e-16 Score=126.09 Aligned_cols=54 Identities=37% Similarity=0.493 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
+.||.+|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 42
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.6e-16 Score=132.46 Aligned_cols=59 Identities=25% Similarity=0.551 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 34567999999999999999999999999999999999999999999999999997654
No 43
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=6.6e-16 Score=137.09 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhc---------------ccccceeccccchhhHHHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------LETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------Ls~rQVkvWFQNRRaK~Kk~~~r 195 (719)
.+++||.|+.||++|+..||..|+.++||+..+|++||.+|+ |++.||++||||||+|+|+++..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 346788899999999999999999999999999999999999 99999999999999999987654
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=3.6e-16 Score=139.34 Aligned_cols=63 Identities=32% Similarity=0.416 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
.+.+++|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 356778899999999999999999999999999999999999999999999999999998653
No 45
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.59 E-value=4.5e-16 Score=129.37 Aligned_cols=59 Identities=31% Similarity=0.517 Sum_probs=56.3
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 67789999999999999999999999999999999999999999999999999999754
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.1e-15 Score=129.21 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---CCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
++.+++|++|+.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 456778899999999999999977 99999999999999999999999999999999999754
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=8.6e-16 Score=131.62 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=53.4
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
|.+||.+|+.+||+.|..++||+..+|++||+.+||+++||++||||||+|+|+.+.
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 456999999999999999999999999999999999999999999999999997543
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=5.9e-16 Score=130.99 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 134 kkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.++.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 467789999999999999999999999999999999999999999999999999999754
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.1e-16 Score=131.09 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
++.|++||.+|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+|++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34578899999999999999999999999999999999999999999999999999754
No 50
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=132.22 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---CCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
.++||+|++|+.+|+..||..|.+ ++||+..+|.+||.++||+++||++||||||+|+|+...+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 456788899999999999999987 5999999999999999999999999999999999976544
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.56 E-value=1.1e-15 Score=129.06 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
||+|++||.+|+..||..| ..++||+..++.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6778899999999999999 899999999999999999999999999999999999976544
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=5.1e-16 Score=136.88 Aligned_cols=56 Identities=18% Similarity=0.346 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
.+||.+|+.+||+.|..++||+..+|.+||..|||+++||+|||||||+|||++.+
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999996543
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.55 E-value=8.4e-16 Score=148.75 Aligned_cols=62 Identities=24% Similarity=0.390 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
.+++||+|+.||.+|+..||+.|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678889999999999999999999999999999999999999999999999999999964
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.54 E-value=1.9e-15 Score=131.64 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=56.5
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
||+|++|+.+|+..||..| ..++||+..+|.+||+++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778899999999999999 899999999999999999999999999999999999976543
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.54 E-value=7.5e-16 Score=149.86 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
.+++||+|++||.+|+..||+.|..++||+..+|.+||+++||+++||++||||||+|+||+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4567888999999999999999999999999999999999999999999999999999997653
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.54 E-value=2.2e-15 Score=122.44 Aligned_cols=55 Identities=40% Similarity=0.507 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHhhh---CCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 137 RYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
+|++||.+|+..||..|.. ++||+..++.+||+++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3678999999999999999 999999999999999999999999999999999986
No 57
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.3e-15 Score=125.38 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhCCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 134 RKKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 134 kkr~RtrfT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
.+++|++|+.+|+..||..| ..++||+..++.+||.++||++.||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46778899999999999999 89999999999999999999999999999999999885
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.53 E-value=1.1e-15 Score=145.97 Aligned_cols=62 Identities=29% Similarity=0.479 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
.+++||+|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667789999999999999999999999999999999999999999999999999999974
No 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.4e-15 Score=128.88 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=53.0
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhCCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 135 KKRYHRHTPQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F-~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
.+++.+++.+|+..||+.| +.++||+..+|.+||++|||+++||++||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 3445678899999999999 99999999999999999999999999999999999985
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.7e-15 Score=130.38 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
+.+||.+|+.+||..|..++||+..+|.+||+++||+++||++||||||+|+|++.
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 34599999999999999999999999999999999999999999999999998644
No 61
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.5e-15 Score=132.66 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHh---------------------cccccceeccccchhhHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL---------------------CLETRQVKFWFQNRRTQM 189 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~L---------------------gLs~rQVkvWFQNRRaK~ 189 (719)
.+++||.|+.|++.|+.+||+.|+.++||+..+|++||.+| .|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35678889999999999999999999999999999999999 789999999999999999
Q ss_pred HHHHHH
Q 005018 190 KTQLER 195 (719)
Q Consensus 190 Kk~~~r 195 (719)
|++++.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 976543
No 62
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=5.1e-15 Score=123.58 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh-CCCCChHHHHHHHHHhcccccceeccccchhhHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (719)
++++||.||.|+.+|+..|+..|+. ++||+...|++||.++||++++|++||||||--.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467889999999999999999999 99999999999999999999999999999996543
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.52 E-value=4.7e-15 Score=129.50 Aligned_cols=58 Identities=36% Similarity=0.467 Sum_probs=55.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhh---CCCCChHHHHHHHHHhcccccceeccccchhhHHH
Q 005018 133 PRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (719)
Q Consensus 133 kkkr~RtrfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (719)
+++|+|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667889999999999999999 99999999999999999999999999999999987
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.51 E-value=4.8e-15 Score=128.52 Aligned_cols=59 Identities=36% Similarity=0.419 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhh---CCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
+++|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 455677999999999999999 99999999999999999999999999999999999753
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.50 E-value=6.6e-15 Score=141.08 Aligned_cols=60 Identities=33% Similarity=0.648 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
+++||+|++||.+|+..||+.|+.++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 466788999999999999999999999999999999999999999999999999999985
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.49 E-value=1.9e-15 Score=127.31 Aligned_cols=56 Identities=36% Similarity=0.463 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHH
Q 005018 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~ 194 (719)
..+|..|+..||+.|+.++||+..+|.+||+++||+++||++||||||+|+|+++.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 35799999999999999999999999999999999999999999999999997553
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.49 E-value=9.3e-15 Score=121.73 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 141 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
-|.+|+.+||+.|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.48 E-value=3.9e-15 Score=133.65 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHH------------------hc---ccccceeccccchhhHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKR------------------LC---LETRQVKFWFQNRRTQM 189 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~------------------Lg---Ls~rQVkvWFQNRRaK~ 189 (719)
.+++||.|+.||.+|+..||..|+.++||+..+|++||.. || |++.||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3566788999999999999999999999999999999999 88 99999999999999998
Q ss_pred HHHHH
Q 005018 190 KTQLE 194 (719)
Q Consensus 190 Kk~~~ 194 (719)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 86553
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.47 E-value=5.6e-15 Score=122.67 Aligned_cols=49 Identities=41% Similarity=0.596 Sum_probs=46.2
Q ss_pred HHHHHHHHHHh-hhCCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 143 PQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 143 ~~Ql~~LE~~F-~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
+.|+.+||+.| ..++||+..+|.+||++|||+++|||+||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 56899999999 67999999999999999999999999999999999984
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.46 E-value=1.8e-14 Score=138.72 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~ 192 (719)
.++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567789999999999999999999999999999999999999999999999999999963
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-14 Score=119.93 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHH
Q 005018 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (719)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (719)
..+.+|+..||+.|..++||+..+|.+||+++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4568999999999999999999999999999999999999999999998774
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.43 E-value=2.5e-14 Score=138.59 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.+++||+|+.||.+|+..||+.|+.++||+..+|.+||+++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 346688899999999999999999999999999999999999999999999999999998654
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=8.4e-14 Score=116.24 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHhh---hCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhh
Q 005018 140 RHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (719)
Q Consensus 140 rfT~~Ql~~LE~~F~---~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (719)
+|+.+|+..||..|. .++||+..+|.+||.++||+++||++||||||+|+|+...++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999997655543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.29 E-value=4.1e-13 Score=133.94 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhc---------------------ccccceeccccchhhHH
Q 005018 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQM 189 (719)
Q Consensus 131 ~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------------Ls~rQVkvWFQNRRaK~ 189 (719)
.+++||.|+.|++.|+..||+.|..++||+...|++||..|+ |++.||++||||||+|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 456688899999999999999999999999999999999999 99999999999999998
Q ss_pred HH
Q 005018 190 KT 191 (719)
Q Consensus 190 Kk 191 (719)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.18 E-value=9.7e-12 Score=109.48 Aligned_cols=59 Identities=29% Similarity=0.419 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHhhh---CCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHHhh
Q 005018 139 HRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r~e 197 (719)
+.|+.+++..|+.+|.+ ++||+..+|.+||+++||+++||++||||||.|+|+...+.+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 46899999999999977 999999999999999999999999999999999998766543
No 76
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.17 E-value=3.1e-10 Score=114.13 Aligned_cols=200 Identities=11% Similarity=0.137 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCeeeccC--CCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHH-
Q 005018 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV- 413 (719)
Q Consensus 337 k~~~~~lA~~Am~El~~la~~~eplWi~~~~--~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV- 413 (719)
....+++++.|+++++++... .--|....+ .+ ..| |.+..+. .|. .-|..++|...+..|.
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g-~~v-----y~~~~~~------~g~---~~k~~~~v~~~~~~v~~ 83 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYG-DTV-----YTIEVPF------HGK---TFILKTFLPCPAELVYQ 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTC-CEE-----EEEEETT------TEE---EEEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCC-CEE-----EEEecCC------CCc---eEEEEEEecCCHHHHHH
Confidence 456789999999999999863 346976422 22 111 3333321 121 2388889988999998
Q ss_pred HHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcc--cccccCceeeEEeeeceecCCeEEEEEEec
Q 005018 414 ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL--SPLVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (719)
Q Consensus 414 e~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~--SPLVp~Re~~fLRyckq~~~g~waVvDvSl 491 (719)
++|+|.+...+-.+. +..++.++.|... + .+ +-++..+ .++|+.|||.++|+++.. ++.++|+-.|+
T Consensus 84 ~~~~d~~~r~~Wd~~-~~~~~vle~~~~~-------t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv 152 (229)
T 1em2_A 84 EVILQPERMVLWNKT-VTACQILQRVEDN-------T-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIAT 152 (229)
T ss_dssp HTTTCHHHHTTTCTT-EEEEEEEEEETTT-------E-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEEC
T ss_pred HHHhCccchhhcccc-cceEEEEEecCCC-------e-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecc
Confidence 777776533333333 3446777766522 2 23 3345544 578999999999999997 56699999999
Q ss_pred cCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 005018 492 DTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 568 (719)
Q Consensus 492 d~~~~~~~~~~~~~~rr~PSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~cerl 568 (719)
+.-. .+..+.++|+..+++|++|++++ +|.|+|||+-|++..-+ +| +.+++..+.-+.-..++.|+.+|+.+
T Consensus 153 ~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 153 SHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp CCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7432 12223589999999999999987 67899999999987654 55 67788777777778899998888754
No 77
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.15 E-value=2.3e-10 Score=114.54 Aligned_cols=193 Identities=15% Similarity=0.213 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeecc--CCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHHHHh-
Q 005018 340 FLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL- 416 (719)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l- 416 (719)
...+|++||+|++++.+ ++.-|.... +.| .. =|.+.++.. | -.=|..++|...+..|.+.|
T Consensus 12 y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~g-v~-----vy~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l~ 75 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS-NQEGWKKESQQDNG-DK-----VMSKVVPDV------G---KVFRLEVVVDQPMERLYEELV 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCEEEEECTTS-CE-----EEEEECSSS------C---EEEEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCeEeeecCCC-cE-----EEEEEcCCC------c---eEEEEEEEEcCCHHHHHHHHH
Confidence 57899999999999976 345797752 333 11 233333211 2 33488899999999999998
Q ss_pred cC---hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhh-hcccccccCceeeEEeeeceecCCeEEEEEEecc
Q 005018 417 MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAEL-QVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSID 492 (719)
Q Consensus 417 mD---~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aEl-qv~SPLVp~Re~~fLRyckq~~~g~waVvDvSld 492 (719)
+| +.+|-.. +..++.++.++. .+ .+.|... ..+.++|+.|||.++||.++. +|.++|+-.|++
T Consensus 76 ~d~~~r~~Wd~~----~~~~~vle~~~~-------~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~ 142 (221)
T 3p0l_A 76 ERMEAMGEWNPN----VKEIKVLQKIGK-------DT-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATD 142 (221)
T ss_dssp TTGGGTTTSCTT----CSEEEEEEECSS-------SE-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECC
T ss_pred hccchhhhcCcc----hheEEEEEecCC-------Ce-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEecc
Confidence 46 4567665 334566665542 22 4555332 123568999999999999986 688999999987
Q ss_pred CccCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005018 493 TIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (719)
Q Consensus 493 ~~~~~~~~~~~~~~rr~PSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (719)
.-. -+..+.++|...+++|++|+++++| .|+|||+-|++..-+ +| +-+++..+.-+.-.++..|+++|+
T Consensus 143 ~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 143 FGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 1222358999999999999999988 999999999987765 43 456777777777789999998887
No 78
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.14 E-value=2e-10 Score=117.23 Aligned_cols=192 Identities=15% Similarity=0.174 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhhcCCCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEEechhhHH-HHhcChhh
Q 005018 343 LALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ETLMDPNR 421 (719)
Q Consensus 343 lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV-e~lmD~~~ 421 (719)
+++.++.|+++.+.....-|....+.... ++|.+.. +.|...-.=|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi---------~V~~k~~---~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNT---------DLAFKKV---GDGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSC---------EEEEECC---CSSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCe---------EEEEEEc---CCCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 34567778887765445569764332101 1221111 12333345577778877777764 78999999
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeece-ecCCeEEEEEEeccCccCCCCC
Q 005018 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGA 500 (719)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq-~~~g~waVvDvSld~~~~~~~~ 500 (719)
|-..+ ..++.++.|+. ...++|..+..+.| ++.|||.++||.++ +++|.++||-.|++.-. .+..
T Consensus 101 Wd~~~----~~~~vle~id~--------~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~P~~ 166 (237)
T 2pso_A 101 WDEDF----VQWKVVETLDR--------QTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-AQLL 166 (237)
T ss_dssp TCTTB----CCCEEEEEEET--------TEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-CCCC
T ss_pred HHhhh----ceEEEEEEcCC--------CcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-CCCC
Confidence 98873 44678777763 22566766666665 79999999999985 78999999999998532 1222
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 005018 501 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (719)
Q Consensus 501 ~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatLqR~ce 566 (719)
.++|+..+++|++|+++.+|.|+|||+-|++.. ..+|.-+..++.. .+-.-++.|+.+++
T Consensus 167 -g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~~~----~~~~~l~~LR~~~~ 226 (237)
T 2pso_A 167 -GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGFGH----LCAAEVARIRNSFQ 226 (237)
T ss_dssp -SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHHHH----HHHHHHHHHHHTTS
T ss_pred -CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 589999999999999999999999999999887 4577665333322 22234566644433
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.13 E-value=1.6e-11 Score=124.20 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhc---------------------ccccceeccccchhhH
Q 005018 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (719)
Q Consensus 130 ~~~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------------Ls~rQVkvWFQNRRaK 188 (719)
..+++||.|+.|++.|+..||+.|..++||+..+|++||+.++ |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 3456678888999999999999999999999999999999998 8999999999999986
Q ss_pred H
Q 005018 189 M 189 (719)
Q Consensus 189 ~ 189 (719)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=3.4e-11 Score=101.14 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhH
Q 005018 143 PQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (719)
Q Consensus 143 ~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK 188 (719)
.+|+..||+.|..+++|+..++.+||..+||+.++||+||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.01 E-value=3.2e-11 Score=129.46 Aligned_cols=56 Identities=27% Similarity=0.426 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHH
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (719)
++.++.++.+|+..||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45567899999999999999999999999999999999999999999999999876
No 82
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.91 E-value=8.4e-09 Score=101.89 Aligned_cols=151 Identities=16% Similarity=0.236 Sum_probs=116.7
Q ss_pred eeccceeEE-echhhHHHHhcC---hhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEE
Q 005018 398 ASRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 473 (719)
Q Consensus 398 ASR~sgvV~-m~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fL 473 (719)
.-|..++|- ..+..+.+.|+| ..+|... +...+||.. +|. .++|.++..|.|+ ..|||.++
T Consensus 53 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~-------~~~~~vle~------~~~-~i~~~~~~~p~p~-~~RD~v~~ 117 (214)
T 1ln1_A 53 EYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY-------VKELYEQEC------NGE-TVVYWEVKYPFPM-SNRDYVYL 117 (214)
T ss_dssp EEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT-------EEEEEEEEE------TTE-EEEEEEECCCTTS-CCEEEEEE
T ss_pred EEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH-------HhhEEEecc------CCC-EEEEEEEEcCCCC-CCceEEEE
Confidence 568889995 999999999999 5677766 455556654 232 4788899888886 99999999
Q ss_pred eeeceec-CC--eEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccch
Q 005018 474 RFCKQHA-EG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGM 550 (719)
Q Consensus 474 Ryckq~~-~g--~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~ 550 (719)
|+++.++ +| .|+|+-.|++.-. .+..+.++|...+++|++|++..+|.|+||++-|++.. ..+|.- |++..+
T Consensus 118 ~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~~ 192 (214)
T 1ln1_A 118 RQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWAA 192 (214)
T ss_dssp EEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHHH
T ss_pred EEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHHH
Confidence 9999875 66 5999999987432 22223579999999999999999999999999999987 455543 445555
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 005018 551 GFGAQRWVATLQRQCECL 568 (719)
Q Consensus 551 afGA~rWlatLqR~cerl 568 (719)
.-++..++..|+++|+..
T Consensus 193 ~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 193 KNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HTHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHHHHHhc
Confidence 566778899998888743
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.84 E-value=1.7e-08 Score=101.42 Aligned_cols=149 Identities=13% Similarity=0.168 Sum_probs=113.2
Q ss_pred eeccceeEEechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhc-ccccccCceeeEE
Q 005018 398 ASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFL 473 (719)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv-~SPLVp~Re~~fL 473 (719)
.-|..++|...+..|.+.|+|.. +|-..+ ..++.++.|. +.-.+.|.-+.- +-|+|..|||.++
T Consensus 68 ~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~----~~~~vle~id--------~~~~I~y~~~~~~~~~~v~~RDfv~~ 135 (224)
T 1jss_A 68 LYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLM----TSLDVLEHFE--------ENCCVMRYTTAGQLLNIISPREFVDF 135 (224)
T ss_dssp EEEEEEEESSCHHHHHHHHSSSTTHHHHCSSE----EEEEEEEECS--------TTEEEEEEEECCBTTTTBCCEEEEEE
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccccccccce----eeEEEEEEcC--------CCeEEEEEEcccccCCCCCCCeEEEE
Confidence 44888899899999999999965 776662 3356665554 122455555543 3457999999999
Q ss_pred eeeceecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchh
Q 005018 474 RFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMG 551 (719)
Q Consensus 474 Ryckq~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyrpl~~Sg~a 551 (719)
|+.++.++| ++|+-+|++.-.. .+.++|....++|++|+++++| .|+|||+-|++.--+ +| +.+++..+.
T Consensus 136 r~~~~~~~~-~vi~~~Sv~hp~~---~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~ 207 (224)
T 1jss_A 136 SYTVGYEEG-LLSCGVSVEWSET---RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMA 207 (224)
T ss_dssp EEEEEETTE-EEEEEEECCCCCC---CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHH
T ss_pred EEEEEcCCe-EEEEEeeeecCCC---CCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHH
Confidence 999998877 7889999884322 2358999999999999999875 899999999987654 44 456777777
Q ss_pred HHHHHHHHHHHHHHH
Q 005018 552 FGAQRWVATLQRQCE 566 (719)
Q Consensus 552 fGA~rWlatLqR~ce 566 (719)
-+...++..|+.+|+
T Consensus 208 ~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 208 STLANFYSDLRKGLR 222 (224)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHh
Confidence 777888999988765
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.67 E-value=6.5e-08 Score=100.32 Aligned_cols=128 Identities=11% Similarity=0.099 Sum_probs=95.8
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccc--cccCceeeEEeeec
Q 005018 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCK 477 (719)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SP--LVp~Re~~fLRyck 477 (719)
|..++|-..+..|.+.|+|.+...+=-+.+ ..++.++-|+. + .++| ++..++| ++++|||..|||.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~------~---~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDE------D---DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEET------T---EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCC------C---eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 778889999999999999986444433332 34666666652 1 3567 6667775 79999999999998
Q ss_pred ee-cCCe-EEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 005018 478 QH-AEGV-WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (719)
Q Consensus 478 q~-~~g~-waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 541 (719)
.. .+|. ++|+-+|++.-. -+..+.++|...+|+|++|+++++|.|+||++-|++- ..++..
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~ 222 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYV 222 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHH
T ss_pred eccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCce
Confidence 74 4774 999999987421 1222258999999999999999999999999988873 445443
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.51 E-value=7.5e-07 Score=86.43 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=109.6
Q ss_pred eeccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeec
Q 005018 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (719)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyck 477 (719)
.=|..++|-..+.++.+.|+|.+...+--|. +...+||.. .. + -.++|.++..+-| +..|||.++|+.+
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~----~~~~~vle~-~~----~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPD----VAASELLKA-TD----T-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTT----EEEEEEEEE-CS----S-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHh----cCEEEEEee-cC----C-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 4677889999999999999998776666555 455666665 21 2 3456777776655 7999999999999
Q ss_pred eecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 005018 478 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 557 (719)
Q Consensus 478 q~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rW 557 (719)
+..+|...|+=.+... ..+..+.++|.+.+++|++|++ .+|.|+||++-|++..- .+|. -|++..+.-+.-..
T Consensus 97 ~~~~g~~~i~~~~~~~--~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~---~lvn~~~~~~~~~~ 169 (189)
T 3qsz_A 97 KAGDGAITVRVEAVPD--YLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS---WLANQTVVETPFGT 169 (189)
T ss_dssp ECTTSCEEEEEEECTT--SSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH---HHHHHTTTHHHHHH
T ss_pred ECCCCeEEEEEEcCCC--ccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH---HHHHHHHHHHHHHH
Confidence 9888876554333211 1121224789999999999999 99999999999998763 3443 34555555566678
Q ss_pred HHHHHHHHHH
Q 005018 558 VATLQRQCEC 567 (719)
Q Consensus 558 latLqR~cer 567 (719)
+..|+++|+.
T Consensus 170 l~~L~k~~~~ 179 (189)
T 3qsz_A 170 LKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhh
Confidence 8899888764
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.42 E-value=2e-08 Score=74.63 Aligned_cols=22 Identities=45% Similarity=0.835 Sum_probs=18.9
Q ss_pred cceeccccchhhHHHHHHHHhh
Q 005018 176 RQVKFWFQNRRTQMKTQLERHE 197 (719)
Q Consensus 176 rQVkvWFQNRRaK~Kk~~~r~e 197 (719)
+||+|||||||+||||++....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999998776643
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.26 E-value=5.4e-06 Score=84.52 Aligned_cols=200 Identities=12% Similarity=0.205 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCCeeeccCCCcccccChHHhhhhcCCCCCCCCCCCceeeeccceeEE-echhhHHHH
Q 005018 340 FLELALAAMDELVKMAQT---DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVET 415 (719)
Q Consensus 340 ~~~lA~~Am~El~~la~~---~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~ 415 (719)
+.++++..+.|.+..+.. ++.-|....+.+ -.++|.+.. ...|...-.=|..++|. ..+..+.+.
T Consensus 24 ~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~~~---------gv~vy~~~~--~~~g~~~~~~K~~~~~~~~~~~~v~~~ 92 (255)
T 2e3n_A 24 FVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEG---------EMKVYRREV--EENGIVLDPLKATHAVKGVTGHEVCNY 92 (255)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTCTTEEEEEEET---------TEEEEEECC--EETTEECCCEEEEEEEETCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeCC---------CEEEEEEEc--CCCCceeeeEEEEEEEcCCCHHHHHHH
Confidence 455566666666666543 235687643221 022332211 01122211235556655 678999999
Q ss_pred hcCh---hhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceec----C--CeEEE
Q 005018 416 LMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA----E--GVWAV 486 (719)
Q Consensus 416 lmD~---~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~----~--g~waV 486 (719)
|+|. .+|-.. +..++.++.|..+ . .+.|..+..|.|+ ..|||.++|++++.. + +.|+|
T Consensus 93 l~d~~~r~~Wd~~----~~~~~vle~i~~~------~--~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i 159 (255)
T 2e3n_A 93 FWNVDVRNDWETT----IENFHVVETLADN------A--IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIV 159 (255)
T ss_dssp HHCGGGHHHHCCS----EEEEEEEEEEETT------E--EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEE
T ss_pred HhCcchHhhhhhh----cceeEEEEEcCCC------C--EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEE
Confidence 9995 466655 3446777666521 2 6788888888885 889999999999883 3 59999
Q ss_pred EEEeccCccCCCCCCCccceee---cCCcceEeecCC--------CccEEEEEEeeeeccccccccchhhhccchhHHHH
Q 005018 487 VDVSIDTIRETSGAPAFVNCRR---LPSGCVVQDMPN--------GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQ 555 (719)
Q Consensus 487 vDvSld~~~~~~~~~~~~~~rr---~PSGclIq~~~n--------G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~ 555 (719)
+..|++.-. .+..+.++|... +.+|++|++..+ +.|+|||+-|++.-- .+|.- +++.....+.-
T Consensus 160 ~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~ 234 (255)
T 2e3n_A 160 CNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREYP 234 (255)
T ss_dssp EEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHH
T ss_pred EEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhcccc
Confidence 999998532 122224688884 678999998733 579999999998764 34442 34555566777
Q ss_pred HHHHHHHHHHHHH
Q 005018 556 RWVATLQRQCECL 568 (719)
Q Consensus 556 rWlatLqR~cerl 568 (719)
..+..|+.+|+..
T Consensus 235 ~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 235 KFLKRFTSYVQEK 247 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7888888888744
No 88
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.04 E-value=0.13 Score=45.35 Aligned_cols=139 Identities=9% Similarity=-0.028 Sum_probs=79.4
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecC
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~ 481 (719)
+..|...+..+-+.|.|.+.|.+-+|.+ ..++++..+. +|.. .++.+--+ +.+.-+..++... ++
T Consensus 7 ~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~----~g~~----~~~~~~~~--g~~~~~~~~~~~~-~~ 71 (147)
T 2d4r_A 7 ERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREG----ARTR----SRWVAVAM--GKKVRWLEEEEWD-DE 71 (147)
T ss_dssp EEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEET----TEEE----EEEEEEET--TEEEEEEEEEEEE-TT
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCC----CccE----EEEEEEeC--CceEEEEEEEEEc-CC
Confidence 3456667889999999999999999975 4455665432 2321 11111111 2223344455432 33
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 005018 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 561 (719)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlatL 561 (719)
+.-++.. .+++ +. ..+.. -.-+++.++| |+|+|..+.+..-..+..++.+++..-+.=+.++.++.|
T Consensus 72 ~~~i~~~-~~~g----~~-~~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 138 (147)
T 2d4r_A 72 NLRNRFF-SPEG----DF-DRYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGL 138 (147)
T ss_dssp TTEEEEE-EEEE----SC-SEEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEE-eccC----Ch-hheEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211111 1121 10 00111 1335677888 999999888876444555666666555556788899999
Q ss_pred HHHHHHH
Q 005018 562 QRQCECL 568 (719)
Q Consensus 562 qR~cerl 568 (719)
++.+|..
T Consensus 139 k~~~e~~ 145 (147)
T 2d4r_A 139 EERVLAA 145 (147)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9988874
No 89
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=93.39 E-value=0.15 Score=50.60 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=57.4
Q ss_pred hhhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhh
Q 005018 586 AGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL 665 (719)
Q Consensus 586 ~~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FL 665 (719)
......++++|+..+..|-.-+.. ..+|... . ..++|+|..+...+. + |.++-|.+ -++++|+.||++|
T Consensus 18 ~~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~-~--~~~gv~v~~~~~~~~---~-~~~~k~~~--~v~~~~~~v~~~l 86 (231)
T 2r55_A 18 LYFQSMAAQMSEAVAEKMLQYRRD--TAGWKIC-R--EGNGVSVSWRPSVEF---P-GNLYRGEG--IVYGTLEEVWDCV 86 (231)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHC--CSSCEEE-E--CCSSEEEEEEECSSS---S-SEEEEEEE--EESSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhcC--CCCCEEE-E--eCCCEEEEEEccCCC---C-CcEEEEEE--EECCCHHHHHHHH
Confidence 344456999999999888876533 3689987 3 357899999876322 2 34444444 4499999999999
Q ss_pred --hccccchhhhhh
Q 005018 666 --RDERLRSEWDIL 677 (719)
Q Consensus 666 --rde~~R~eWd~l 677 (719)
.|...|.+||-.
T Consensus 87 ~~~d~~~r~~Wd~~ 100 (231)
T 2r55_A 87 KPAVGGLRVKWDEN 100 (231)
T ss_dssp CC--CCSHHHHCTT
T ss_pred HhhCcchhhhhccc
Confidence 999999999964
No 90
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=90.82 E-value=2.3 Score=40.30 Aligned_cols=142 Identities=8% Similarity=0.033 Sum_probs=78.4
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhh--cccccccCceeeEEeeec
Q 005018 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREVNFLRFCK 477 (719)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElq--v~SPLVp~Re~~fLRyck 477 (719)
..+.+|.-.+..+-+++-|.++|-+.||. |...+|++.+. + .+.+.|. +-- -- .++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~----~~~~~vl~~~~----~----~~~~rl~~~~~~-~G-~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSE----YASVEVLGRDD----D----KVTFRLTMHPDA-DG-KVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSS----EEEEEEEEECS----S----EEEEEEEECCCT-TS-CCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhC----ceEEEEEecCC----C----EEEEEEEEEecc-Cc-eEEEEEEEEEE
Confidence 34566777888999999999999999998 57778887541 1 1223322 211 11 24444555543
Q ss_pred eecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 005018 478 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 557 (719)
Q Consensus 478 q~~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rW 557 (719)
. .++..+ +..+ +.+++ | +.+=.-..+.+.++| |+|+|.-+.++++.....+ +.+..-+-=..+.-
T Consensus 72 d-~~~~~I--~~~~--~~~gP----f---~~l~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~--~~~~~~~~~~~~~~ 136 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGP----F---QYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPVDD--AWMTDNINRNSRTQ 136 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCC----h---hhccCEEEEEECCCC-EEEEEEEEEEecCCCCCCH--HHHHHHHHhhHHHH
Confidence 2 233222 2221 11222 2 233334456777775 9999999999976522111 00111111112334
Q ss_pred HHHHHHHHHHHHH
Q 005018 558 VATLQRQCECLAI 570 (719)
Q Consensus 558 latLqR~cerla~ 570 (719)
|+.|++.+|+.+.
T Consensus 137 L~~lK~~~E~~~~ 149 (159)
T 3tl1_A 137 MALIRDRIEQAAG 149 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh
Confidence 7778778887664
No 91
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=89.77 E-value=2.3 Score=40.18 Aligned_cols=145 Identities=14% Similarity=0.044 Sum_probs=81.1
Q ss_pred ccceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeecee
Q 005018 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (719)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~ 479 (719)
..+.+|.-.+..+-+.+-|.++|-+.+|. +..++|+..+. ++ +.+++.+.-. ..++-+.-|+..+-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~----~~~~~v~~~~~----~~----~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPP----TEKVEILEEGQ----GY----QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSS----EEEEEEEEEET----TE----EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcc----cceEEEEecCC----CE----EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 34556667888999999999999999999 56677776432 11 2233332211 22333333443332
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCcce-EeecCCCccEEEEEEeeeeccccccccchhhhcc---------c
Q 005018 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCV-VQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIIS---------G 549 (719)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGcl-Iq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~S---------g 549 (719)
++.. +.. ..++. +++ | ..+ .|.. +++.++|.|+|+|.-+.++....+..++.++..- -
T Consensus 74 ~~~~-i~~-~~~~~--~gp----f---~~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~ 141 (172)
T 3tfz_A 74 ARRV-IAY-RQLET--API----V---GHM-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAV 141 (172)
T ss_dssp TTTE-EEE-EEEEC--CTT----E---EEE-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHH
T ss_pred CCCE-EEE-EEeeC--CCC----h---hhc-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHH
Confidence 2221 111 11110 111 1 000 1222 5666678899999999999887777777665421 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 005018 550 MGFGAQRWVATLQRQCECLAI 570 (719)
Q Consensus 550 ~afGA~rWlatLqR~cerla~ 570 (719)
+.=+.+.-|+.|++.+|+.+.
T Consensus 142 l~~~~~~~L~~lk~~aE~~~~ 162 (172)
T 3tfz_A 142 VERNSVADLNAVLGEAERRVR 162 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHh
Confidence 222234457777777777654
No 92
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=89.01 E-value=3.8 Score=39.18 Aligned_cols=144 Identities=10% Similarity=0.067 Sum_probs=76.8
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceec
Q 005018 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (719)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~ 480 (719)
.+.+|.-.+..+-+.+-|.++|-+.||. +...+|++.+. +. ..+...+++..--. .++|..-|.+ ..
T Consensus 7 ~si~I~a~~~~v~~lv~Dv~~~p~w~p~----~~~~~~~~~~~-----~~-~~~~l~~~~~~~G~-~~~~ts~~~~--d~ 73 (169)
T 3tvq_A 7 NSIVVNAPFELVWDVTNDIEAWPELFSE----YAEAEILRQDG-----DG-FDFRLKTRPDANGR-VWEWVSHRVP--DK 73 (169)
T ss_dssp EEEEESSCHHHHHHHHTCGGGHHHHCTT----EEEEEEEEEET-----TE-EEEEEEECCCTTSC-CCEEEEEEEE--EG
T ss_pred EEEEecCCHHHHHHHHHhhhHHHHHHhh----eeEEEEEecCC-----CE-EEEEEEEEecCCCe-EEEEEEEEEE--cC
Confidence 4556666788899999999999999999 46666776431 11 01111112222111 2223222221 12
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 005018 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (719)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlat 560 (719)
++..+.... +.+++ | +.+=.-.-+.+.++| |+|+|.-+.++++... +-.+.+...+.=..+..|+.
T Consensus 74 ~~~~I~~~~----l~~gP----f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p--~~~~~~~~av~~~~~~~L~~ 139 (169)
T 3tvq_A 74 GSRTVRAHR----VETGP----F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAP--FDNAHMTAHLNTTTRANMER 139 (169)
T ss_dssp GGTEEEEEE----SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCS--SCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEE----cCCCC----h---hheeeEEEEEECCCC-EEEEEEEEEEecCCCc--ccHHHHHHHHHhhHHHHHHH
Confidence 222221111 11112 2 223234557888888 9999999999975521 11112222222223456899
Q ss_pred HHHHHHHHHHH
Q 005018 561 LQRQCECLAIL 571 (719)
Q Consensus 561 LqR~cerla~l 571 (719)
|++.+|+.+..
T Consensus 140 LK~~aE~~~~~ 150 (169)
T 3tvq_A 140 IKKIIEDRHRE 150 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhhhhh
Confidence 99999988764
No 93
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.52 E-value=0.2 Score=42.05 Aligned_cols=39 Identities=33% Similarity=0.420 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhCCCCChHHHHHHHHHhcccccceecccc
Q 005018 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (719)
Q Consensus 145 Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQ 183 (719)
-.+.|+.+|+..+.+.......|+.+.+|+..|||-||-
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999994
No 94
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=88.03 E-value=1 Score=41.12 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=81.0
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceec
Q 005018 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (719)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~ 480 (719)
.+..|...+..+-+.+.|.++|-+.+|.+ ..++|+..+..|. |. -+.+++.+- .-+.++-|..|+..+-.
T Consensus 6 ~s~~i~ap~~~v~~~v~D~~~~p~~~p~~----~~~~v~~~~~~~g--~~--~~~~~~~~~--~~~~~~~~~~~v~~~~~ 75 (148)
T 1t17_A 6 VTKVLPYTPDQLFELVGDVDAYPKFVPWI----TGMRTWNGRVDGA--VS--TVDAEAQVG--FSFLREKFATRVRRDKD 75 (148)
T ss_dssp EEEEESSCTHHHHHHHTTTTCCSSCCSSC----CCCCEEEEEEETT--EE--EEEEEEECS--TTSSCCEEEEEEEEETT
T ss_pred EEEEecCCHHHHHHHHHHHhhHHhhCCCc----CeeEEEEecCCCC--Cc--eEEEEEEEE--ecceeEEEEEEEEEcCC
Confidence 45566778889999999999999999995 4456665332211 11 134444442 23456667778775433
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 005018 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (719)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlat 560 (719)
+ ..|.-..+++ +.. .....++ +++.++| |+|++.-++|+... ++..++..-+.-.+++.+.+
T Consensus 76 ~--~~i~~~~~~G----~f~-~~~g~w~------f~~~~~g-t~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~ 137 (148)
T 1t17_A 76 A--RSIDVSLLYG----PFK-RLNNGWR------FMPEGDA-TRVEFVIEFAFKSA----LLDAMLAANVDRAAGKLIAC 137 (148)
T ss_dssp T--CEEEEEESST----TSS-CEEEEEE------EEEETTE-EEEEEEEEECCSCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred C--cEEEEEECCC----Chh-ccEEEEE------EEECCCC-eEEEEEEEEEECcH----HHHHHHHHHHHHHHHHHHHH
Confidence 3 2233333442 110 0122233 4567778 99999988887522 33344433333456777788
Q ss_pred HHHHHHHH
Q 005018 561 LQRQCECL 568 (719)
Q Consensus 561 LqR~cerl 568 (719)
+.+.|+.+
T Consensus 138 f~~r~~~~ 145 (148)
T 1t17_A 138 FEARAQQL 145 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777654
No 95
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=87.80 E-value=0.74 Score=45.64 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccc
Q 005018 592 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLR 671 (719)
Q Consensus 592 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R 671 (719)
+.+.+...+..|-... ..+|... .. .++|+|.++...+. .|-+.=+ ..-+++||+.||++|.|...|
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~-~~--~~gv~vy~~~~~~~----~~~~~k~--~~~v~~~~~~v~~~l~d~~~r 92 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVA-KK--AKDVTVWRKPSEEF----NGYLYKA--QGVMDDVVNNVIDHIRPGPWR 92 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEE-EE--ETTEEEEEEECSSS----SSEEEEE--EEEESSCHHHHHHHHSSSTTH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEE-EE--CCCEEEEEEeccCC----CceEEEE--EEEEeCCHHHHHHHHhCcccc
Confidence 4444444444444322 5679876 32 47899999865332 2344444 444599999999999999999
Q ss_pred hhhhhh
Q 005018 672 SEWDIL 677 (719)
Q Consensus 672 ~eWd~l 677 (719)
.+||-.
T Consensus 93 ~~Wd~~ 98 (224)
T 1jss_A 93 LDWDRL 98 (224)
T ss_dssp HHHCSS
T ss_pred cccccc
Confidence 999954
No 96
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=87.63 E-value=1.2 Score=43.91 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhh-hcc
Q 005018 590 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDE 668 (719)
Q Consensus 590 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FL-rde 668 (719)
..-.++++.-+..+..-+. ...+|... . ...++|.|.+++. +|. |.++=|. .-+++||+.||++| .|.
T Consensus 10 ~~y~~~~~~~~~~~l~~~~--~~~gW~~~-~-~~~~gv~vy~~~~---~~~--g~~~k~~--~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILS--NQEGWKKE-S-QQDNGDKVMSKVV---PDV--GKVFRLE--VVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SCTTCEEE-E-ECTTSCEEEEEEC---SSS--CEEEEEE--EEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCCCeEe-e-ecCCCcEEEEEEc---CCC--ceEEEEE--EEEcCCHHHHHHHHHhcc
Confidence 3445566655555554443 35689977 2 1246788999984 332 4455444 44599999999999 588
Q ss_pred ccchhhhhh
Q 005018 669 RLRSEWDIL 677 (719)
Q Consensus 669 ~~R~eWd~l 677 (719)
..|.+||-.
T Consensus 79 ~~r~~Wd~~ 87 (221)
T 3p0l_A 79 EAMGEWNPN 87 (221)
T ss_dssp GGTTTSCTT
T ss_pred chhhhcCcc
Confidence 899999964
No 97
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=87.32 E-value=0.43 Score=45.61 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=42.7
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005018 613 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 613 ~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 677 (719)
++|... . ..++|+|.+++.. |.+ +..-....-++.||+.||++|.|...|.+||-.
T Consensus 3 ~~W~~~-~--~~~gv~v~~~~~~---~~~---~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~ 58 (189)
T 3qsz_A 3 DGWSLA-K--DAEGIKVYVRNVE---GSP---LREFRGEVRLKAAADDVVKVLRDANAFRQWMPD 58 (189)
T ss_dssp CCCEEE-E--EETTEEEEEECCT---TCS---SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTT
T ss_pred CCCEEE-E--cCCCEEEEEEeCC---CCC---eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHh
Confidence 579877 3 2578999999862 221 224455667789999999999999999999964
No 98
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=86.88 E-value=0.33 Score=47.25 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=44.6
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhh
Q 005018 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~l 677 (719)
...+|... .. .++|+|..++.. +. .+..-.+..-++ +||+.||++|.|...|.+||-.
T Consensus 26 ~~~~W~~~-~~--~~~v~v~~~~~~---~~---~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~ 84 (214)
T 1ln1_A 26 AGADWQLL-VE--TSGISIYRLLDK---KT---GLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY 84 (214)
T ss_dssp TTTTCEEE-EE--ETTEEEEEEEET---TT---TEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT
T ss_pred CCCCcEEE-EE--CCCeEEEEeccC---CC---CcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH
Confidence 45689987 32 467999998752 22 244567777788 9999999999999999999964
No 99
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=86.52 E-value=0.16 Score=43.78 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceecccc
Q 005018 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQ 183 (719)
..||.++....-..+... ......++|+.+|+++..|..|.+
T Consensus 4 ~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS---DGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG---GGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc---CCChHHHHHHHHCcCHHHHHHHHH
Confidence 468888776555555322 012367899999999999999974
No 100
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=83.82 E-value=4.2 Score=41.78 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCC-Ccc--ChhhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEE
Q 005018 554 AQRWVATLQRQCECLAILMSTSVSARDH-TAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVM 630 (719)
Q Consensus 554 A~rWlatLqR~cerla~l~~~~ip~~d~-~~i--s~~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~ 630 (719)
-||.-.++.|-==||.-- .|-++.. .+- .++-+.+=+.|+.-.+.+...-. ...+|... . ..++|+|.
T Consensus 10 ~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l~---~~~gW~~~-~--~~~gv~Vy 80 (258)
T 3fo5_A 10 ERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKMLV---AKDNWVLS-S--EISQVRLY 80 (258)
T ss_dssp CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHHH---TCSCCEEE-E--EETTEEEE
T ss_pred hhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhhh---ccCCCEEE-e--cCCCeEEE
Confidence 356666665554444331 3322222 222 34666667777766665544322 46789977 3 25789999
Q ss_pred EecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 005018 631 TRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 631 ~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 677 (719)
++.. +| .++-+...-+++||+.||++|.|...|.+||-.
T Consensus 81 ~~~~---~~-----~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~ 119 (258)
T 3fo5_A 81 TLED---DK-----FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKH 119 (258)
T ss_dssp EEEC---SS-----CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTT
T ss_pred EEEC---CC-----ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhh
Confidence 8642 22 345566667899999999999999999999964
No 101
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.02 E-value=2.3 Score=36.64 Aligned_cols=54 Identities=30% Similarity=0.473 Sum_probs=32.2
Q ss_pred hhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH----HHhhHhhh
Q 005018 196 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (719)
Q Consensus 196 ~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~----r~~~~~~~ 263 (719)
..-..|+-+++.|+.+|..+.++... ..-....|..||.+||+|.. |++++.+|
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e--------------~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQN--------------AQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566666666555554320 01133458899999999985 66666655
No 102
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=79.76 E-value=13 Score=34.60 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=79.0
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceec
Q 005018 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (719)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~ 480 (719)
.+.+|.-.+..+-+.+.|.++|...||..+.- +-.. +|....+.+++.+-. ...|+-|..||...-+
T Consensus 11 ~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~~~~-------~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~~ 77 (161)
T 3p9v_A 11 RDLEIPASYDEVFDLLADVPKSASHFPKVDKL----VDLG-------NNAYRWEMEKVGVDK--HAIQSVYACTYHADKE 77 (161)
T ss_dssp EEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----EEEE-------TTEEEEEECCBSSGG--GCBCCEEEEEEEEETT
T ss_pred EEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----EEcC-------CCceEEEEEEEeeee--EEEEEEEEEEEEEcCC
Confidence 35567778899999999999999999986553 1121 233344445555433 2348888889876543
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 005018 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (719)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlat 560 (719)
+. .+ +..+. +++ +. +.+-.-.-+++.++|.|+|+|.-+.|.. -.+..++..++..-+.-.+++-+.+
T Consensus 78 ~~-~I--~~~~~---~g~----~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~a 144 (161)
T 3p9v_A 78 AG-KI--TWSPI---KGE----GN--GVVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVDT 144 (161)
T ss_dssp TT-EE--EEEEC---TTS----TT--EEEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CC-EE--EEEEe---cCc----cc--eeEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33 22 22221 112 10 1111123357778888999999888886 1233344433322223345666666
Q ss_pred HHHHH
Q 005018 561 LQRQC 565 (719)
Q Consensus 561 LqR~c 565 (719)
..+-+
T Consensus 145 f~~ra 149 (161)
T 3p9v_A 145 YMANL 149 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 103
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=78.21 E-value=2.1 Score=43.07 Aligned_cols=76 Identities=17% Similarity=0.362 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEE-EEEEeeccc-cChhHHHHhhhccc
Q 005018 592 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDER 669 (719)
Q Consensus 592 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl-~A~tS~wLp-v~p~~vf~FLrde~ 669 (719)
+-++.+..+..+-..+ ....+|... . ..++|+|..++..+ . |.++ .-++..-++ ++|+.||++|.|..
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~-~--~~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLV-V--EEGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEE-E--EETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEE-E--eCCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 4444444444444433 234689977 3 25679999998632 2 3321 123333456 89999999999999
Q ss_pred cchhhhhh
Q 005018 670 LRSEWDIL 677 (719)
Q Consensus 670 ~R~eWd~l 677 (719)
.|.+||-.
T Consensus 98 ~r~~Wd~~ 105 (255)
T 2e3n_A 98 VRNDWETT 105 (255)
T ss_dssp GHHHHCCS
T ss_pred hHhhhhhh
Confidence 99999953
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.58 E-value=6.6 Score=31.98 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=31.3
Q ss_pred HHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005018 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (719)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~ 255 (719)
++.....+..+.+.|..+|..|+..+ ..|..|+..||+-|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i---------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA---------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 45556778888999999999888744 468888888887654
No 105
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=74.57 E-value=1.1 Score=45.94 Aligned_cols=17 Identities=47% Similarity=0.628 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHhHHHHH
Q 005018 239 EEQHLRIENARLKDELD 255 (719)
Q Consensus 239 e~q~L~~ENa~Lk~el~ 255 (719)
+.++|+.||++||+.|.
T Consensus 44 ~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 44 EVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44457778888877543
No 106
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=74.06 E-value=8.2 Score=33.87 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=44.5
Q ss_pred cccccceeccccchhhHHHHHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhH
Q 005018 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (719)
Q Consensus 172 gLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk 251 (719)
||+..+|.-|=|-||+=.=+...........++...|..++..+.. +.++|+.||++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 7788888777776665444433344444444556666666666654 5667888999999
Q ss_pred HHHHHHhh
Q 005018 252 DELDRVCA 259 (719)
Q Consensus 252 ~el~r~~~ 259 (719)
.|++.+..
T Consensus 76 ~e~d~~k~ 83 (90)
T 2wt7_B 76 RERDAYKV 83 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 107
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=73.29 E-value=3.7 Score=40.43 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHHH-Hhhhcc
Q 005018 590 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF-NFLRDE 668 (719)
Q Consensus 590 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~vf-~FLrde 668 (719)
+.-++.++.....|-.-+. ...+|... .. ..++|+|.++...+ .|.+.-+.+ -+++||+.|| ++|.|.
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~-~~-~~~g~~vy~~~~~~-----~g~~~k~~~--~v~~~~~~v~~~~~~d~ 89 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFE-KN-NEYGDTVYTIEVPF-----HGKTFILKT--FLPCPAELVYQEVILQP 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEE-EE-CTTCCEEEEEEETT-----TEEEEEEEE--EESSCHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEE-Ee-cCCCCEEEEEecCC-----CCceEEEEE--EecCCHHHHHHHHHhCc
Confidence 3444444444444433332 24589877 32 13578898886521 244444444 4599999999 999999
Q ss_pred ccchhhhhh
Q 005018 669 RLRSEWDIL 677 (719)
Q Consensus 669 ~~R~eWd~l 677 (719)
..|.+||-.
T Consensus 90 ~~r~~Wd~~ 98 (229)
T 1em2_A 90 ERMVLWNKT 98 (229)
T ss_dssp HHHTTTCTT
T ss_pred cchhhcccc
Confidence 999999964
No 108
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=71.95 E-value=57 Score=29.45 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=61.7
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeE--Eeeecee
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF--LRFCKQH 479 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~f--LRyckq~ 479 (719)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..| .. .+.+.+ ++-+.+.-+. ++|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~-------~~---~~~~~~--~~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGED-------KY---KADLQI--GIAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETT-------EE---EEEEEE--CCGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCC-------eE---EEEEEE--EeeeEEEEEEEEEEEEecC
Confidence 3456667889999999999999999874 456666422 11 111111 1112222222 2343334
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 005018 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 546 (719)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~ 546 (719)
....|++.-..-+. .+ +.. .---+-+.+..+|.|+|+|.-.+++... +..+..+++
T Consensus 72 ~~~~~~~~~~~~~~---~~----~~~---~~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG---PG----FVN---AEGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp TTTEEEEEEEEEET---TE----EEE---EEEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred CCcEEEEEEEecCC---Cc----cEE---EEEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 44555444332221 00 111 1111335666778899999887776433 344555555
No 109
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=66.73 E-value=17 Score=29.19 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHH
Q 005018 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (719)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el 254 (719)
+......+..+.+.|..+|..|.. +...|+.|++.|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~---------------------~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQS---------------------EVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHh
Confidence 344566788888888888888886 3446777777777654
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.64 E-value=11 Score=32.93 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=11.2
Q ss_pred hHHHHHhHHHHHhhHhHHh
Q 005018 199 SLLRQENDKLRAENMSIRD 217 (719)
Q Consensus 199 ~~l~~en~~L~~en~~l~e 217 (719)
..+....+.|..||..|+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665554
No 111
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=60.14 E-value=12 Score=30.24 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.1
Q ss_pred HhhhhHHHHHhHHHHHhhHhHHh
Q 005018 195 RHENSLLRQENDKLRAENMSIRD 217 (719)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e 217 (719)
......|..+.+.|..+|..|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777777777665
No 112
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=58.32 E-value=12 Score=33.11 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCc
Q 005018 221 NPICTNCGGPAI 232 (719)
Q Consensus 221 ~~~C~~Cggp~~ 232 (719)
...||-||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 457999999764
No 113
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=54.66 E-value=7.7 Score=26.20 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=14.7
Q ss_pred HHHHHHHHHhHHHHHHHh
Q 005018 241 QHLRIENARLKDELDRVC 258 (719)
Q Consensus 241 q~L~~ENa~Lk~el~r~~ 258 (719)
++|...|+|||+|+.-+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 468899999999987553
No 114
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.98 E-value=24 Score=30.05 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=8.1
Q ss_pred HHHHhHHHHHhhHhHH
Q 005018 201 LRQENDKLRAENMSIR 216 (719)
Q Consensus 201 l~~en~~L~~en~~l~ 216 (719)
+....+.|..||..|+
T Consensus 41 ~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555444
No 115
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.42 E-value=39 Score=27.22 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=17.9
Q ss_pred HHhhhhHHHHHhHHHHHhhHhHHhhh
Q 005018 194 ERHENSLLRQENDKLRAENMSIRDAM 219 (719)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~ 219 (719)
+......|..+.+.|..+|..|+..+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888777633
No 116
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=49.79 E-value=21 Score=35.75 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=37.9
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeccccChhHH-HHhhhccccchhhhhhc
Q 005018 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRL-FNFLRDERLRSEWDILS 678 (719)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~s~~~~G~P~G~Vl~A~tS~wLpv~p~~v-f~FLrde~~R~eWd~ls 678 (719)
...+|... . ..++|+|.+++.. +|.+ +..-++..-++.+|..+ +++|.| |.+||-.+
T Consensus 48 ~~~gW~~~-~--~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~ 105 (237)
T 2pso_A 48 KFKGWVTC-S--STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDF 105 (237)
T ss_dssp HCCSCEEE-C--CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTB
T ss_pred CCCCCEEE-e--cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhh
Confidence 44579877 3 3578999999852 2333 22335566678777665 567777 99999644
No 117
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=47.22 E-value=12 Score=35.42 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=27.6
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 005018 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
+...|+-+..||+.||+|++|...-.+|--
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999974
No 118
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=46.50 E-value=13 Score=28.85 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceecccc
Q 005018 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQ 183 (719)
..|+.+........+... ........++|+++|+++..|..|..
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 458888877775555443 22222367899999999999999964
No 119
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=45.56 E-value=7.7 Score=34.50 Aligned_cols=56 Identities=25% Similarity=0.232 Sum_probs=33.3
Q ss_pred HHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHH
Q 005018 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (719)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~ 255 (719)
..-+++-.|....+.+..||.+++..-... | ....++..+..+|+.||.+|+.|-+
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666777777777666542211 0 1111234566788889999888744
No 120
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=44.70 E-value=2.8 Score=37.99 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=38.9
Q ss_pred cccccceeccccchhhHHHHHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhH
Q 005018 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (719)
Q Consensus 172 gLs~rQVkvWFQNRRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk 251 (719)
||++.+|.-.=|-||.-.=+...+.......++.+.|..++..|.. +..+|..||+.|+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~---------------------e~e~L~~En~~l~ 85 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ---------------------EVEKLASENASMK 85 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS---------------------TTTTTTSTTSHHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 6777777666555554433333333444444555666665544433 4556778888888
Q ss_pred HHHHHHh
Q 005018 252 DELDRVC 258 (719)
Q Consensus 252 ~el~r~~ 258 (719)
.|++++.
T Consensus 86 ~E~~~lk 92 (107)
T 3a5t_A 86 LELDALR 92 (107)
T ss_dssp HTTTSSS
T ss_pred HHHHHHH
Confidence 8877654
No 121
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.35 E-value=39 Score=28.21 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=5.4
Q ss_pred HHHHHhHHHHHHH
Q 005018 245 IENARLKDELDRV 257 (719)
Q Consensus 245 ~ENa~Lk~el~r~ 257 (719)
.||..|++++..+
T Consensus 50 ~en~~Lr~~i~~L 62 (70)
T 1gd2_E 50 LENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 122
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=44.07 E-value=15 Score=30.94 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=31.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccc
Q 005018 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (719)
Q Consensus 135 kr~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWF 182 (719)
++.+..|+.++....-+.+... ....++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-----ESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHCcCHHHHHHHH
Confidence 4455678988865555555432 236689999999999999995
No 123
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=42.84 E-value=51 Score=28.48 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=16.2
Q ss_pred HHHHHHHHhHHHHHHHhhHhh
Q 005018 242 HLRIENARLKDELDRVCALAG 262 (719)
Q Consensus 242 ~L~~ENa~Lk~el~r~~~~~~ 262 (719)
.|..|++.||+|+++++.+|.
T Consensus 57 ~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 57 QKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888877764
No 124
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=42.24 E-value=20 Score=31.71 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhH
Q 005018 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (719)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK 188 (719)
+|.+||.++...+-..+.++.... ..++|+.+|+++..|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 456799999887777775554332 3478999999999999997665443
No 125
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.11 E-value=69 Score=24.38 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=25.3
Q ss_pred hHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHhhH
Q 005018 199 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (719)
Q Consensus 199 ~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~~~ 260 (719)
..+++...+|+.+|..+.. ++|.|..--+.|++|+.|+...
T Consensus 6 aylrkkiarlkkdnlqler---------------------deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLER---------------------DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhh---------------------hHhhHHHHHHHHHHHHHHHHHH
Confidence 4455555666666555543 5666666667778888777543
No 126
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=40.65 E-value=12 Score=32.34 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.9
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
..++.++.||+.||++|.|..+..+|.-
T Consensus 5 ~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 5 RAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 4678889999999999999999999963
No 127
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.50 E-value=63 Score=25.39 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=27.4
Q ss_pred HHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHHHh
Q 005018 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (719)
Q Consensus 200 ~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r~~ 258 (719)
.++.++..|.+.|.+|.+.+. +-+.|-..|++||+++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~---------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK---------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhh
Confidence 466777777777777777553 45667888999988863
No 128
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=36.94 E-value=15 Score=26.61 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhh
Q 005018 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (719)
Q Consensus 141 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRa 187 (719)
++.++...+...+... ....++|+.+|++...|..|+.....
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 5666666555555543 23678999999999999999875443
No 129
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=36.51 E-value=12 Score=34.02 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.2
Q ss_pred EEEeeccccChhHHHHhhhccccchhhh
Q 005018 648 AATSVWLPVSPQRLFNFLRDERLRSEWD 675 (719)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (719)
-..++.++.||++||++|.|.....+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467889999999999999999999996
No 130
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=35.71 E-value=14 Score=33.05 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=26.2
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhh
Q 005018 647 SAATSVWLPVSPQRLFNFLRDERLRSEWD 675 (719)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (719)
....++.++.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 45678899999999999999999999996
No 131
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=35.54 E-value=1.4e+02 Score=27.92 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=58.8
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecC
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~ 481 (719)
+..|...+.++-++|.|-..| .-+|.++.. ++++ .|.+|+.-|++..+ . . ..+| .++.|-...--
T Consensus 7 si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s---~e~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~~ 71 (160)
T 3p51_A 7 SIVVDAPVERVWSRIRNFHDF-SWAPSLIKS---CKKV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIERR 71 (160)
T ss_dssp EEEESSCHHHHHHHHCCTTCC-TTCTTTCCC---EEEE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTTE
T ss_pred EEEECCCHHHHHHHHhCcCCC-eEccCceEE---EEEE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCcE
Confidence 445566788999999999999 999988543 2333 34444445777665 1 1 1233 22322211001
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCcceEeecC-CCccEEEEEEeeeecc
Q 005018 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDE 535 (719)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~-nG~skVtwVeH~e~d~ 535 (719)
=+|-|++-.+- ... . ..+..=+=.-+.+.+ +|.|.|+|.-.++.++
T Consensus 72 ~sY~ii~g~l~----~~~-~---~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~ 118 (160)
T 3p51_A 72 IMYSMDEGPSP----VSS-G---EIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118 (160)
T ss_dssp EEEEEEECSTT----SST-T---TEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred EEEEEecCCCc----ccc-c---ceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence 14555542110 000 0 011111222245555 7899999998888764
No 132
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.00 E-value=34 Score=24.63 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhHHHHHHHhhHh
Q 005018 240 EQHLRIENARLKDELDRVCALA 261 (719)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~~~~ 261 (719)
...|..+|..|.+|+.|+..+.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 4478899999999999998875
No 133
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.15 E-value=66 Score=26.80 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=8.9
Q ss_pred hHHHHHHHHHhHHHHHH
Q 005018 240 EQHLRIENARLKDELDR 256 (719)
Q Consensus 240 ~q~L~~ENa~Lk~el~r 256 (719)
.+.|+.++..|..|+..
T Consensus 52 n~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 52 NDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555556555543
No 134
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.02 E-value=42 Score=34.51 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHHHHHHHh
Q 005018 241 QHLRIENARLKDELDRVC 258 (719)
Q Consensus 241 q~L~~ENa~Lk~el~r~~ 258 (719)
++++.|..+||+|++++.
T Consensus 78 k~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 78 KEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 457789999999999976
No 135
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.79 E-value=58 Score=25.68 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=6.7
Q ss_pred hHHHHHHHHHhHHHHH
Q 005018 240 EQHLRIENARLKDELD 255 (719)
Q Consensus 240 ~q~L~~ENa~Lk~el~ 255 (719)
...|+.||+.||.+++
T Consensus 21 ~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 21 IELLRLELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 136
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=32.69 E-value=1.7e+02 Score=26.06 Aligned_cols=37 Identities=8% Similarity=0.008 Sum_probs=27.2
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCC
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSG 442 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G 442 (719)
+..|...+.++-+.|.|...|.+-+|.| +.++++..+
T Consensus 7 si~I~ap~e~Vw~~l~d~~~~~~w~p~v----~~~~~~~g~ 43 (151)
T 2le1_A 7 SVEVAAPAADVWTLVGDFSAIHRWHPQV----SAPTLRGAS 43 (151)
T ss_dssp EEEESSCHHHHHHHHTTSGGGGGTCTTC----CCEEEESSC
T ss_pred EEEecCCHHHHHHHHhCcCcHHHhcCCc----eEEEEECCC
Confidence 3445567889999999999999989985 345555543
No 137
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=32.35 E-value=23 Score=32.45 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=26.4
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 005018 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
....|+-++.||+.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 345788899999999999999999999963
No 138
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=32.30 E-value=21 Score=32.17 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=25.6
Q ss_pred EEeeccccChhHHHHhhhccccchhhhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~l 677 (719)
..|+.++.||+.||+++.|-.+..+|---
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~ 33 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPW 33 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSS
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCC
Confidence 46888999999999999999999999643
No 139
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=31.58 E-value=38 Score=28.40 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.+++.|...|.-.|-.. ..-.++|+.+|+++..|+.+...=|.|.|+..
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 36777777777654222 34678999999999999988765555555433
No 140
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=31.22 E-value=28 Score=30.48 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=25.1
Q ss_pred EEEEeeccccChhHHHHhhhccccchhh
Q 005018 647 SAATSVWLPVSPQRLFNFLRDERLRSEW 674 (719)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eW 674 (719)
....+..++.||++||++|-|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3456788899999999999999999999
No 141
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=29.64 E-value=33 Score=24.11 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccc
Q 005018 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (719)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQN 184 (719)
.++.++...+...+... + ...++|+.+|++...|+.|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777775555555432 2 3678999999999999998753
No 142
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=29.36 E-value=30 Score=30.58 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.3
Q ss_pred EEeeccccChhHHHHhhhccccchhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWD 675 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (719)
..+..++.||++||+.|-|.....+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999993
No 143
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=28.91 E-value=28 Score=31.26 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.5
Q ss_pred EEEeeccccChhHHHHhhhccccchhhh
Q 005018 648 AATSVWLPVSPQRLFNFLRDERLRSEWD 675 (719)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (719)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456788999999999999999999993
No 144
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=28.81 E-value=66 Score=26.10 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhHHHHHHHHHhHHHHHH
Q 005018 185 RRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (719)
Q Consensus 185 RRaK~Kk~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~q~L~~ENa~Lk~el~r 256 (719)
||.+.| +......|..+.+.|..+|..|.. |.+.|+++|..
T Consensus 22 rrsR~R---K~~~~~~Le~~v~~L~~eN~~L~~----------------------------ev~~Lr~~l~~ 62 (63)
T 2dgc_A 22 RRSRAR---KLQRMKQLEDKVEELLSKNYHLEN----------------------------EVARLKKLVGE 62 (63)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHC---
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHhc
No 145
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.80 E-value=51 Score=25.94 Aligned_cols=15 Identities=40% Similarity=0.773 Sum_probs=7.2
Q ss_pred HHHHHHHHhHHHHHH
Q 005018 242 HLRIENARLKDELDR 256 (719)
Q Consensus 242 ~L~~ENa~Lk~el~r 256 (719)
-|+.||.-||+||+.
T Consensus 14 ~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 14 ALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHh
Confidence 344455555555443
No 146
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=28.58 E-value=42 Score=29.84 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.+++.|...+. .| .....-.++|+.+|+++..|+.+.+.=|.+.|+..
T Consensus 109 ~L~~~~r~v~~-~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YL-----IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HH-----TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HH-----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46666666666 33 23345788999999999999988765555555433
No 147
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=27.98 E-value=3.1e+02 Score=24.03 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=21.7
Q ss_pred eEEechhhHHHHhcChhhhhhhcccc
Q 005018 404 MVIINSLALVETLMDPNRWAEMFPCM 429 (719)
Q Consensus 404 vV~m~~~~LVe~lmD~~~W~~~Fp~i 429 (719)
.|...+.++-+.|.|.+.|.+-+|.+
T Consensus 20 ~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 20 EVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 44556788999999999999999975
No 148
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=27.91 E-value=35 Score=34.81 Aligned_cols=19 Identities=32% Similarity=0.183 Sum_probs=15.1
Q ss_pred HHHHHHHhHHHHHHHhhHh
Q 005018 243 LRIENARLKDELDRVCALA 261 (719)
Q Consensus 243 L~~ENa~Lk~el~r~~~~~ 261 (719)
...+...|++|.+|++.++
T Consensus 41 ~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 41 LESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567788889999988775
No 149
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.87 E-value=1.1e+02 Score=26.38 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=7.3
Q ss_pred HHHHHhHHHHHHHhhHh
Q 005018 245 IENARLKDELDRVCALA 261 (719)
Q Consensus 245 ~ENa~Lk~el~r~~~~~ 261 (719)
.|.++||+|.+++..+|
T Consensus 52 eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 52 SEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 150
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.92 E-value=2.1 Score=40.74 Aligned_cols=31 Identities=3% Similarity=-0.087 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCChH
Q 005018 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEK 162 (719)
Q Consensus 132 ~kkkr~RtrfT~~Ql~~LE~~F~~~~yPs~~ 162 (719)
.+.||.|+.|+.+|++.|++.|+.++||...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 3457788899999999999999999999753
No 151
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=26.39 E-value=36 Score=31.75 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=26.7
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 005018 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (719)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (719)
....|+.++.||+.||+++.|-....+|--
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~P 35 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIFP 35 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHCS
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhCc
Confidence 456789999999999999999999999953
No 152
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=25.89 E-value=82 Score=27.95 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHH
Q 005018 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (719)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~ 193 (719)
.+++.|...+...|... ..-.++|+.+|+++..|+.|.+.-|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47888888888775432 23678999999999999999887666666544
No 153
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.37 E-value=1.4e+02 Score=32.44 Aligned_cols=23 Identities=35% Similarity=0.237 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHhhH
Q 005018 238 LEEQHLRIENARLKDELDRVCAL 260 (719)
Q Consensus 238 ~e~q~L~~ENa~Lk~el~r~~~~ 260 (719)
-+.++|+.||++|+++++.+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhh
Confidence 46778999999999998876543
No 154
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=25.36 E-value=1.3e+02 Score=27.28 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=20.2
Q ss_pred hhhHHHHHhHHHHHhhHhHHhhhcC
Q 005018 197 ENSLLRQENDKLRAENMSIRDAMRN 221 (719)
Q Consensus 197 e~~~l~~en~~L~~en~~l~e~~~~ 221 (719)
....|.+++.+|+-||+.|+..+.+
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456889999999999999999975
No 155
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.49 E-value=2.6e+02 Score=24.19 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=7.5
Q ss_pred HHHHHHHHhHHHHHHH
Q 005018 242 HLRIENARLKDELDRV 257 (719)
Q Consensus 242 ~L~~ENa~Lk~el~r~ 257 (719)
.|..||+.|+.+++.+
T Consensus 47 ~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 47 ELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555444433
No 156
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.66 E-value=87 Score=27.64 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHHHHHHH
Q 005018 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (719)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk~~~r 195 (719)
.+++.|...+.-.|-.. ..-.++|+.+|+++..|+.+...-|.+.|+...+
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888877765332 2467899999999999999987666666654433
No 157
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.66 E-value=1.5e+02 Score=23.67 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhHHHHHHHhhHhhh
Q 005018 239 EEQHLRIENARLKDELDRVCALAGK 263 (719)
Q Consensus 239 e~q~L~~ENa~Lk~el~r~~~~~~~ 263 (719)
..++|...+....+|++|+.++...
T Consensus 26 kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 26 KIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888899998887643
No 158
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=23.15 E-value=30 Score=30.77 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=24.5
Q ss_pred EEeeccccChhHHHHhhhccccchhhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEWD 675 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (719)
..+..++.||++||+.|-|..+..+|-
T Consensus 11 ~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 11 KQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 467788999999999999999999995
No 159
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.07 E-value=34 Score=26.59 Aligned_cols=46 Identities=9% Similarity=-0.094 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccchhhHHH
Q 005018 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (719)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (719)
.+++.+...|...|-.. ..-.++|+.+|+++..|+.+...-|.+.|
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888888888766332 34678999999999999987654444433
No 160
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=23.02 E-value=30 Score=30.43 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.2
Q ss_pred EeeccccChhHHHHhhhccccchhhh
Q 005018 650 TSVWLPVSPQRLFNFLRDERLRSEWD 675 (719)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd 675 (719)
.+.-++.||++||++|-|..+..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45678999999999999999999994
No 161
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=22.84 E-value=32 Score=31.29 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=24.4
Q ss_pred EEEeeccccChhHHHHhhhccccchhh
Q 005018 648 AATSVWLPVSPQRLFNFLRDERLRSEW 674 (719)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eW 674 (719)
...+..++.||++||++|-|.....+|
T Consensus 12 i~~~~~i~Ap~e~Vw~altd~~~~~~W 38 (152)
T 2kew_A 12 ITKSITLEAPIQKVWETVSTSEGIAKW 38 (152)
T ss_dssp EEEEEEECSCHHHHHHHSSSSHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHhCHHHHHHh
Confidence 346788999999999999999999999
No 162
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.83 E-value=55 Score=28.43 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceeccccc
Q 005018 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (719)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQN 184 (719)
..+|+.|.++|.-.++-. .-.++|+.+|+++..|+.+.++
T Consensus 33 ~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp SSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 458999999998866433 2489999999999999977653
No 163
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=22.70 E-value=4.2e+02 Score=23.75 Aligned_cols=135 Identities=7% Similarity=-0.068 Sum_probs=64.1
Q ss_pred ceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceecC
Q 005018 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (719)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~~ 481 (719)
+.+|...+..+-+.+.|.+.|-+.+|.+ ..++++..+ ... +.++ .|.=+.+.-+..||.....+
T Consensus 9 s~~I~ap~e~V~~~~~D~e~~p~w~p~~----~~v~~~~~~-------~~~-~~~~----~~~G~~~~~~~~~v~e~~p~ 72 (155)
T 3ggn_A 9 AVTIGKPAEQLYAVWRDLPGLPLLMTHL----RSVEVLDDK-------RSR-WTVE----APAPLGTVSWEAELTADEPG 72 (155)
T ss_dssp EEEESSCHHHHHHHHHCGGGHHHHSTTC----CEEEECSSS-------EEE-EEEE----CCTTTCEEEEEEEEEEEETT
T ss_pred EEEEcCCHHHHHHHHhCHHHhHHHhhhc----eEEEEecCC-------eeE-EEEE----ecCCcceEEEEEEEEEecCC
Confidence 4556667889999999999999999975 455666421 111 1111 12212344456677665444
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCcceEeecC-CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 005018 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (719)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~rr~PSGclIq~~~-nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~rWlat 560 (719)
-.. +-.++++.. .. .... +-.++.+ +|.|+||+.-+.+....-+-.++-+++ +.+ ++|++.+
T Consensus 73 ~~i--~~~~~~g~~----~~-~~g~------~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~~--~~~--~~~~v~~ 135 (155)
T 3ggn_A 73 KRI--AWRSLPGAR----IE-NSGE------VLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMF--NQE--PSQQLRD 135 (155)
T ss_dssp TEE--EEEECTTCS----SC-EEEE------EEEEECSSSSCEEEEEEEEEC------------------C--HHHHHHH
T ss_pred CEE--EEEECCCCC----cc-eEEE------EEEEECCCCCceEEEEEEEEECCCcHHHHHHHHHh--hhh--HHHHHHH
Confidence 432 233333310 00 1111 2246674 568999997776654333334433333 111 4555443
Q ss_pred HHHHHHHHHHHh
Q 005018 561 LQRQCECLAILM 572 (719)
Q Consensus 561 LqR~cerla~l~ 572 (719)
.++|+..++
T Consensus 136 ---~l~r~k~~~ 144 (155)
T 3ggn_A 136 ---DLMRFKREQ 144 (155)
T ss_dssp ---HHHHHHHHH
T ss_pred ---HHHHHHHHH
Confidence 345554443
No 164
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=22.37 E-value=52 Score=29.55 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.5
Q ss_pred EEEeeccccChhHHHHhhhccccchhhh
Q 005018 648 AATSVWLPVSPQRLFNFLRDERLRSEWD 675 (719)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (719)
...++-++.||++||++|.|-....+|.
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~~~~w~ 31 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSAIHRWH 31 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGGGGGTC
T ss_pred EEEEEEecCCHHHHHHHHhCcCcHHHhc
Confidence 3467888999999999999988888995
No 165
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.20 E-value=2.5e+02 Score=24.91 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHhHHHHHHHhhHhh
Q 005018 239 EEQHLRIENARLKDELDRVCALAG 262 (719)
Q Consensus 239 e~q~L~~ENa~Lk~el~r~~~~~~ 262 (719)
..++...+-..|++|+++++....
T Consensus 69 a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 69 ARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888888876654
No 166
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=22.09 E-value=2.9e+02 Score=25.02 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred cceeEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCcceeeehhhhhcccccccCceeeEEeeeceec
Q 005018 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (719)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~G~~g~~~GalqLM~aElqv~SPLVp~Re~~fLRyckq~~ 480 (719)
.+..|...+.++-++|.|-+.|.+-|| -|.+|..++ | |. +|.+. +.
T Consensus 6 ~si~I~Ap~~~VW~~l~d~~~~~~w~p-~v~~~~~~~----G--G~--------------------------vR~~~-~~ 51 (146)
T 3f08_A 6 TSMEIFGSTEQVWQLIGGFNSLPDWLP-YIPSSKLTE----G--GR--------------------------VRHLA-NP 51 (146)
T ss_dssp EEEEESSCHHHHHHHHCSTTCHHHHCT-TCCEEEEEG----G--GT--------------------------EEEEE-CT
T ss_pred EEEEEeCCHHHHHHHHhccccHHHhCC-CeEEEEEeC----C--Ce--------------------------EEEEE-eC
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCc----------ceEee-cCCCccEEEEEEeeeeccccccccchhhhccc
Q 005018 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSG----------CVVQD-MPNGYSKVTWVEHAEYDESQVHQLYKPLIISG 549 (719)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~rr~PSG----------clIq~-~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg 549 (719)
+|. ++.--|+.+.+.. ..-..++-.| .-+.+ -.+|.|.|+|.-.++- ..+..+.....
T Consensus 52 ~G~--~~~Erl~~~D~~~----~~~~y~iv~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p-----~g~~~~~~~~~ 120 (146)
T 3f08_A 52 DGE--TIIERLEVFNDKE----RYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTP-----VAVSDEEAINL 120 (146)
T ss_dssp TSC--EEEEEEEEEETTT----TEEEEEEEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEE-----SSSCHHHHHHH
T ss_pred CCC--EEEEEEEEEeCCC----CEEEEEEecCCCceeEEEEEEEEEEecCCCcEEEEEEEEEEe-----CCCCHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005018 550 MGFGAQRWVATLQRQCECL 568 (719)
Q Consensus 550 ~afGA~rWlatLqR~cerl 568 (719)
+.-=-+.=|+.|++..|.|
T Consensus 121 ~~~~~~~~L~~Lk~~~e~~ 139 (146)
T 3f08_A 121 VHGIYSDGLKALQHAFLDL 139 (146)
T ss_dssp HHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHhhh
No 167
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}
Probab=21.63 E-value=33 Score=30.60 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=23.7
Q ss_pred EEeeccccChhHHHHhhhccccchhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEW 674 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eW 674 (719)
..+.-++.||++||++|-|.....+|
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W 29 (142)
T 2lcg_A 4 TVETTVAAPVGKVWRAYTTPEDIKQW 29 (142)
T ss_dssp EEEEEESSCHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcC
Confidence 45677899999999999999999999
No 168
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.48 E-value=97 Score=27.57 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=10.4
Q ss_pred hhhHHHHHhHHHHHhhHhHH
Q 005018 197 ENSLLRQENDKLRAENMSIR 216 (719)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ 216 (719)
.-..|..+.++|+.||..|+
T Consensus 66 ~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666555444
No 169
>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}
Probab=20.55 E-value=36 Score=30.71 Aligned_cols=25 Identities=8% Similarity=0.322 Sum_probs=23.1
Q ss_pred EeeccccChhHHHHhhhccccchhh
Q 005018 650 TSVWLPVSPQRLFNFLRDERLRSEW 674 (719)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eW 674 (719)
.+.-++.||++||+.|-|+.+..+|
T Consensus 6 ~~~~i~Ap~e~Vw~altdpe~~~~W 30 (144)
T 2l8o_A 6 VEVTVYAAIEKVWKYWNEPAHIMKW 30 (144)
T ss_dssp EEEEECSCHHHHHHHHHCHHHHHHH
T ss_pred EEEEECCCHHHHHHHHCCHHHHhhc
Confidence 5667899999999999999999999
No 170
>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}
Probab=20.23 E-value=36 Score=30.72 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=23.6
Q ss_pred EEeeccccChhHHHHhhhccccchhh
Q 005018 649 ATSVWLPVSPQRLFNFLRDERLRSEW 674 (719)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eW 674 (719)
..+..++.||++||+.|-|+.+..+|
T Consensus 4 ~~~~~i~Ap~e~Vw~altdp~~~~~W 29 (144)
T 2lgh_A 4 SIEAHIEQEIEAVWWAWNDPDCIARW 29 (144)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHTTS
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcc
Confidence 45677899999999999999999999
No 171
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.11 E-value=60 Score=27.55 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCChHHHHHHHHHhcccccceecccc
Q 005018 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (719)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQ 183 (719)
....+|+.|.++|.-.++- ....++|+.|+++++.|+...+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G------~s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKG------FTNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp ---CCCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHH
Confidence 3456999999999887633 2478899999999999886543
No 172
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.00 E-value=1.6e+02 Score=29.36 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=14.0
Q ss_pred HHHHHHHHhHHHHHHHhhH---hhhhcCCCCCCC
Q 005018 242 HLRIENARLKDELDRVCAL---AGKFLGRPVSSM 272 (719)
Q Consensus 242 ~L~~ENa~Lk~el~r~~~~---~~~~~~~~~~~~ 272 (719)
.|+.||..||.=.+++..+ ..++++.+...+
T Consensus 133 ~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~ 166 (209)
T 2wvr_A 133 RLKKENKELAEVAEHVQYMAELIERLNGEPLDNF 166 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 4666676666554444433 345567665443
Done!