BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005021
(719 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/672 (78%), Positives = 568/672 (84%), Gaps = 30/672 (4%)
Query: 75 AVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNP 133
AVETL+ + L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYNP
Sbjct: 2 AVETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNP 61
Query: 134 KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPG 193
KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLK FRQWGS+TPGHPENFETPG
Sbjct: 62 KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPG 121
Query: 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASS 253
+EVTTGPLGQG+ANAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA S
Sbjct: 122 VEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACS 181
Query: 254 LAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------- 300
LAGH GLGKLIAFYDDNHISIDGDTEIAFTE+V RFE LGWH IWV
Sbjct: 182 LAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAA 241
Query: 301 ----------------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVP 344
TTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F VP
Sbjct: 242 IKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVP 301
Query: 345 EDVKKHWSRHVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTP 404
EDVK HWSRH EGA LEA+WN SI +G+LP GW ALP YTP
Sbjct: 302 EDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYTP 361
Query: 405 ESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGV 464
ESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDFQKDT EERNVRFGV
Sbjct: 362 ESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGV 421
Query: 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE 524
REHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGE
Sbjct: 422 REHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGE 481
Query: 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG 584
DGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPSILALSRQKLPHL G
Sbjct: 482 DGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLPG 541
Query: 585 TSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWEL 644
TSI+GVEKG Y ISDNS+GNKPD+I++GTGS RK GK VRVVSFVSWEL
Sbjct: 542 TSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWEL 601
Query: 645 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 704
FDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE+
Sbjct: 602 FDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEY 661
Query: 705 GITAEAVITAAK 716
GIT E++I AAK
Sbjct: 662 GITVESIIAAAK 673
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 592 bits (1526), Expect = e-169, Method: Compositional matrix adjust.
Identities = 329/660 (49%), Positives = 416/660 (63%), Gaps = 37/660 (5%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
S+NTIR L++DA+EKANSGHPG P G AP + L+ + ++NP NP WFNRDRFVLSAGH
Sbjct: 33 SINTIRTLSIDAIEKANSGHPGXPXGAAPXAYTLWTQFXKHNPNNPTWFNRDRFVLSAGH 92
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
G L Y+LLHL+GYD V DDLKNFRQWGSKTPGHPE T G++ TTGPLGQG+A AVG
Sbjct: 93 GSXLLYSLLHLSGYD-VTXDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVG 151
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
A AE+HLAA+YN+ IVDHYTY I GDG EG++ EASSLA HL LG+L+ YD N
Sbjct: 152 XAXAERHLAAKYNRDAYNIVDHYTYAICGDGDLXEGVSAEASSLAAHLQLGRLVVLYDSN 211
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWHVIWVT----------------------------T 302
IS+DGD +F+E+V+ R++ GW VI V T
Sbjct: 212 DISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRT 271
Query: 303 TIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEP-FHVPEDVKKHWSRHVAE-GAT 360
TIGFGSPNK+ + HGS LG +E T++ W E FHV E+V +++ + V + G T
Sbjct: 272 TIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGET 331
Query: 361 LEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLN 420
+AEWN + +G LP GWE+ LPTY S A ATRN S +N
Sbjct: 332 AQAEWNTXLGEYAQAYPELANELQAAXNGLLPEGWEQNLPTYELGSKA-ATRNSSGAVIN 390
Query: 421 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 480
A+A+++P GGSADLA SN T DF +D +N+ +GVRE GA NGIALH
Sbjct: 391 AIAESVPSFFGGSADLAGSNKTYXNNEKDFTRDDYSGKNIWYGVREFAXGAAXNGIALHG 450
Query: 481 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540
GL Y TFFVF+DY+R AIR++AL + V YV THDSI +GEDGPTH+PIE LA+ RA
Sbjct: 451 -GLKTYGGTFFVFSDYLRPAIRLAALXQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRA 509
Query: 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVE---KGAYII 597
PN+ ++RPADGNE+ A+++A+ + +P+ L L+RQ LP L G D E KGAY++
Sbjct: 510 XPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVV 569
Query: 598 SDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVL 657
S S DVIL+ TGS G VVS S + F+ Q+ YKESVL
Sbjct: 570 S-ASKKETADVILLATGSEVSLAVEAQKALAVDGVDASVVSXPSXDRFEAQTAEYKESVL 628
Query: 658 PAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKE 717
P AV+ R +IE G+TFGW + VG +G +GID FGASAP KI +E+G T E V+ KE
Sbjct: 629 PKAVTKRFAIEXGATFGWHRYVGLEGDVLGIDTFGASAPGEKIXEEYGFTVENVVRKVKE 688
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 579 bits (1493), Expect = e-165, Method: Compositional matrix adjust.
Identities = 319/665 (47%), Positives = 406/665 (61%), Gaps = 47/665 (7%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS GH
Sbjct: 9 AVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGH 67
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPLGQG++NAVG
Sbjct: 68 AVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNAVG 125
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YDDN
Sbjct: 126 MAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDN 185
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWHVIWV-----------------------------T 301
I+IDG T I+F E+V KR+E GW V++V T
Sbjct: 186 KITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 245
Query: 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE-GA 359
TTIG+GS + A S+SVHG+ L A +V + G+ P + F VP++V H+ + + + G
Sbjct: 246 TTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGV 304
Query: 360 TLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 419
+WN SGQLPA WE LPTYT + A ATR LS+T L
Sbjct: 305 EANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVL 364
Query: 420 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-----RNVRFGVREHGMGAICN 474
+ LP L+GGSADL SN+T K DFQ + R +R+G+REH MGAI N
Sbjct: 365 EDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 424
Query: 475 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534
GI+ PY TF F Y A+R+SAL VI+V THDSIG+GEDGPTHQPIE
Sbjct: 425 GISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 484
Query: 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGA 594
LA FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+SI+ KG
Sbjct: 485 LAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGG 544
Query: 595 YIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKE 654
Y++ D ++ PD+IL+ TGS RVVS + FD+Q Y+
Sbjct: 545 YVLQDVAN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRL 601
Query: 655 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 714
SVLP V +S+E +T W K ++ GIDRFGAS A +++K FG T E V
Sbjct: 602 SVLPDNVPI-MSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAER 657
Query: 715 AKEVC 719
A++
Sbjct: 658 AQKTI 662
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 579 bits (1493), Expect = e-165, Method: Compositional matrix adjust.
Identities = 319/665 (47%), Positives = 406/665 (61%), Gaps = 47/665 (7%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS GH
Sbjct: 11 AVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGH 69
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPLGQG++NAVG
Sbjct: 70 AVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNAVG 127
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YDDN
Sbjct: 128 MAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDN 187
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWHVIWV-----------------------------T 301
I+IDG T I+F E+V KR+E GW V++V T
Sbjct: 188 KITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 247
Query: 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE-GA 359
TTIG+GS + A S+SVHG+ L A +V + G+ P + F VP++V H+ + + + G
Sbjct: 248 TTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGV 306
Query: 360 TLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 419
+WN SGQLPA WE LPTYT + A ATR LS+T L
Sbjct: 307 EANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVL 366
Query: 420 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-----RNVRFGVREHGMGAICN 474
+ LP L+GGSADL SN+T K DFQ + R +R+G+REH MGAI N
Sbjct: 367 EDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426
Query: 475 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534
GI+ PY TF F Y A+R+SAL VI+V THDSIG+GEDGPTHQPIE
Sbjct: 427 GISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 486
Query: 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGA 594
LA FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+SI+ KG
Sbjct: 487 LAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGG 546
Query: 595 YIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKE 654
Y++ D ++ PD+IL+ TGS RVVS + FD+Q Y+
Sbjct: 547 YVLQDVAN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRL 603
Query: 655 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 714
SVLP V +S+E +T W K ++ GIDRFGAS A +++K FG T E V
Sbjct: 604 SVLPDNVPI-MSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAER 659
Query: 715 AKEVC 719
A++
Sbjct: 660 AQKTI 664
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 313/666 (46%), Positives = 407/666 (61%), Gaps = 48/666 (7%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
A +EK N IR LA D V+ SGHPG PMG APM +L+ EVM+YN ++P W +RDRFV
Sbjct: 4 ASIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFV 63
Query: 146 LSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGM 205
+S GHGC LQYALLH+AGY+ + DDLK FRQ GS+TPGHPE F TPG+EVTTGPLGQG+
Sbjct: 64 MSNGHGCALQYALLHMAGYN-LTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGI 122
Query: 206 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 265
ANAVGLA+AE HLAA +N+P IVDHYTYV GDGC MEG+ EA SLAGHL L KLI
Sbjct: 123 ANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIV 182
Query: 266 FYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------- 300
YD N+ISIDG T ++FTE +++ +G+HVI V
Sbjct: 183 IYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPK 242
Query: 301 ----TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHV 355
TTTIGFGS +K + VHG+ LG +++ + G P + + V +DV+ + H+
Sbjct: 243 MIVQTTTIGFGS-SKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHI 301
Query: 356 AEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLS 415
+ + + W + G+LP+GWE LPT S A ATR S
Sbjct: 302 DKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPT---NSSAIATRKAS 358
Query: 416 QTCLNALAKTLPGLLGGSADLASSNMT--LLKMFGDFQKDTPEERNVRFGVREHGMGAIC 473
+ CL L +P L+GGSADL SN+T DF + E R +RFGVREH M AI
Sbjct: 359 ENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAIL 418
Query: 474 NGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 533
NG+ H G+IP+ TF F Y A+R++A+ VIYV THDSIG+GEDGPTHQP+E
Sbjct: 419 NGLDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVE 477
Query: 534 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG 593
+A+ RAMPN+ ++RP+D ET+GA+ VA+++ P++L LSRQ +G+SI+GV G
Sbjct: 478 LVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHG 537
Query: 594 AYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGK-AVRVVSFVSWELFDEQSDAY 652
AY + D PD+ L+ S G+ VRVVS ELFD Q D Y
Sbjct: 538 AYSVVD-----VPDLQLVIVASGSEVSLAVDAAKALSGELRVRVVSMPCQELFDAQPDTY 592
Query: 653 KESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVI 712
+++VLPA V VS+EA +FGWEK + +G+ FGASAPAG +YK+FGIT E V+
Sbjct: 593 RQAVLPAGVPV-VSVEAYVSFGWEKYSHAH---VGMSGFGASAPAGVLYKKFGITVEEVV 648
Query: 713 TAAKEV 718
+E+
Sbjct: 649 RTGREL 654
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 575 bits (1483), Expect = e-164, Method: Compositional matrix adjust.
Identities = 318/665 (47%), Positives = 405/665 (60%), Gaps = 47/665 (7%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS GH
Sbjct: 11 AVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGH 69
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPLGQG++NAVG
Sbjct: 70 AVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNAVG 127
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YDDN
Sbjct: 128 MAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDN 187
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWHVIWV-----------------------------T 301
I+IDG T I+F E+V KR+E GW V++V T
Sbjct: 188 KITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 247
Query: 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE-GA 359
TTIG+GS + A S+SV G+ L A +V + G+ P + F VP++V H+ + + + G
Sbjct: 248 TTIGYGSLH-AGSHSVAGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGV 306
Query: 360 TLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 419
+WN SGQLPA WE LPTYT + A ATR LS+T L
Sbjct: 307 EANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVL 366
Query: 420 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-----RNVRFGVREHGMGAICN 474
+ LP L+GGSADL SN+T K DFQ + R +R+G+REH MGAI N
Sbjct: 367 EDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426
Query: 475 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534
GI+ PY TF F Y A+R+SAL VI+V THDSIG+GEDGPTHQPIE
Sbjct: 427 GISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 486
Query: 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGA 594
LA FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+SI+ KG
Sbjct: 487 LAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGG 546
Query: 595 YIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKE 654
Y++ D ++ PD+IL+ TGS RVVS + FD+Q Y+
Sbjct: 547 YVLQDVAN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRL 603
Query: 655 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 714
SVLP V +S+E +T W K ++ GIDRFGAS A +++K FG T E V
Sbjct: 604 SVLPDNVPI-MSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAER 659
Query: 715 AKEVC 719
A++
Sbjct: 660 AQKTI 664
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 565 bits (1455), Expect = e-161, Method: Compositional matrix adjust.
Identities = 303/660 (45%), Positives = 395/660 (59%), Gaps = 40/660 (6%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS GHG
Sbjct: 8 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGS 67
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
ML Y+LLHL GYD E+ LKNFRQ SKTPGHPE +T G+E TTGPLGQG+ANAVG+A
Sbjct: 68 MLIYSLLHLTGYDLPMEE-LKNFRQLHSKTPGHPEVGKTAGVETTTGPLGQGIANAVGMA 126
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN I
Sbjct: 127 IAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 186
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVI----------------------------WVTTTI 304
SIDG E FT++ RFE GWHVI T I
Sbjct: 187 SIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTII 246
Query: 305 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 364
GFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W A G E+
Sbjct: 247 GFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEA-GQAKESA 305
Query: 365 WNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 420
WN G++P+ ++ + + +PA+ A+R SQ +
Sbjct: 306 WNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIE 365
Query: 421 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 480
A LP LGGSADLA SN+TL +D + +GVRE GM AI NGI+LH
Sbjct: 366 AFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNY-IHYGVREFGMTAIANGISLHG 424
Query: 481 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540
G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +AS R
Sbjct: 425 -GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRV 483
Query: 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIIS 598
PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G Y++
Sbjct: 484 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLK 543
Query: 599 DNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 658
D +P++I I TGS G RVVS S + FD+Q AY+ESVLP
Sbjct: 544 D--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLP 601
Query: 659 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+ AKE+
Sbjct: 602 KAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKEL 661
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 564 bits (1453), Expect = e-161, Method: Compositional matrix adjust.
Identities = 312/651 (47%), Positives = 398/651 (61%), Gaps = 42/651 (6%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
SVN IRFLA+DAVEKA SGHPG P G AP+ ++L+ EV R+NP +P W +RDRFVLSAGH
Sbjct: 11 SVNAIRFLAIDAVEKARSGHPGXPXGXAPLAYLLFREVXRHNPLDPDWPDRDRFVLSAGH 70
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
G L YA+LHL GYD + ++LK+FRQWGSKTPGHPE TPG+EVTTGPLGQG++ AVG
Sbjct: 71 GSXLLYAVLHLTGYD-LPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVG 129
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
LALAE+ LAA +N+P + +VDHYTYV+ DG EG++ EA+SLAGH GL KLI F+DDN
Sbjct: 130 LALAERKLAAEFNRPGHVVVDHYTYVLASDGDLXEGVSGEAASLAGHWGLSKLIVFWDDN 189
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWH---------------------------VIWVTTT 303
ISIDG T++AFTE+V R+ GW +I V +
Sbjct: 190 RISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKLDERPTLIAVRSH 249
Query: 304 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEA 363
IGFGSP K +S HG LG + V+ATR+NLGWPY PF VPE+V +H +G +
Sbjct: 250 IGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHXDXR-EKGRAWQE 307
Query: 364 EWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALA 423
W G+LP E+ P ATR S LN LA
Sbjct: 308 AWEKALEAYARAYPDLHQELXRRLRGELPPLPEEPPSFDKP----IATRAASGRALNLLA 363
Query: 424 KTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGL 483
LP LLGGSADL SN T + DF + P R + FGVREH GAI NG+ LH G
Sbjct: 364 PRLPELLGGSADLTPSNNTKAEGXEDFSRANPLGRYLHFGVREHAXGAILNGLNLHG-GY 422
Query: 484 IPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 543
Y TF VF+DY R AIR++AL ++V THDSI LGEDGPTHQP+EHL S RA PN
Sbjct: 423 RAYGGTFLVFSDYXRPAIRLAALXGVPTVFVFTHDSIALGEDGPTHQPVEHLXSLRAXPN 482
Query: 544 ILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSG 603
+ ++RPAD ET A+ VA+ ++ P+ L L+RQ +P L+ G+ +G Y++ D
Sbjct: 483 LFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLRGGYVLEDV--- 539
Query: 604 NKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSA 663
+P +L+ TGS R+ G VRVVS S+ELF Q +AY++ VLP +
Sbjct: 540 EEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPGLPV 599
Query: 664 RVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 714
V++EAG++ GWE+ K + +DRFGASAP ++Y+ G T E V A
Sbjct: 600 -VAVEAGASLGWERYA---HKVVALDRFGASAPYPEVYERLGFTPERVAEA 646
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 563 bits (1452), Expect = e-161, Method: Compositional matrix adjust.
Identities = 303/660 (45%), Positives = 394/660 (59%), Gaps = 40/660 (6%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS GHG
Sbjct: 9 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGS 68
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
ML Y+LLHL GYD E+ LKNFRQ SKTPGHPE T G+E TTGPLGQG+ANAVG+A
Sbjct: 69 MLIYSLLHLTGYDLPMEE-LKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMA 127
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN I
Sbjct: 128 IAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 187
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVI----------------------------WVTTTI 304
SIDG E FT++ RFE GWHVI T I
Sbjct: 188 SIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTII 247
Query: 305 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 364
GFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W A G E+
Sbjct: 248 GFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEA-GQAKESA 306
Query: 365 WNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 420
WN G++P+ ++ + + +PA+ A+R SQ +
Sbjct: 307 WNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIE 366
Query: 421 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 480
A LP LGGSADLA SN+TL +D + +GVRE GM AI NGI+LH
Sbjct: 367 AFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNY-IHYGVREFGMTAIANGISLHG 425
Query: 481 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540
G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +AS R
Sbjct: 426 -GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRV 484
Query: 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIIS 598
PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G Y++
Sbjct: 485 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLK 544
Query: 599 DNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 658
D +P++I I TGS G RVVS S + FD+Q AY+ESVLP
Sbjct: 545 D--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLP 602
Query: 659 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+ AKE+
Sbjct: 603 KAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKEL 662
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 535 bits (1377), Expect = e-152, Method: Compositional matrix adjust.
Identities = 317/677 (46%), Positives = 394/677 (58%), Gaps = 44/677 (6%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
T++ A N IR LA+DAV++ANSGHPG+PMG A +G L+ +++NP NP+W +
Sbjct: 38 TTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWAD 97
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
RDRFVLS GHG ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE TPG+E TTGP
Sbjct: 98 RDRFVLSNGHGSMLLYSLLHLTGYD-LPIEELKNFRQLHSKTPGHPEYGITPGVETTTGP 156
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL 260
LGQG+ANAVG+AL E LAA +N+ D +IVDH+TYV LGDGC MEGI++EA SLAG L L
Sbjct: 157 LGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKL 216
Query: 261 GKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI---------------------- 298
KLIA YDDN ISIDGD F ++ KRFE GW+VI
Sbjct: 217 NKLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKRSD 276
Query: 299 -----WVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR 353
T IG G+ KA + VHG+ LGA E+ TR+ LGW + PF +P++V W
Sbjct: 277 KPSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAWDA 336
Query: 354 HVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTY----TPESPAE 409
A G E +WN +G LPA W
Sbjct: 337 KEA-GKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAGANERGETV 395
Query: 410 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQK--DTPEER---NVRFGV 464
ATR SQ + LA LP LLGGSADL SN+T K + D P + ++ +GV
Sbjct: 396 ATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGV 455
Query: 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE 524
RE GM A NG+ LH G P+ TF F+DY R A+R++AL + I+V THDSIGLGE
Sbjct: 456 REFGMSAAINGLVLHG-GYKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLGE 514
Query: 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG 584
DGPTHQ +EH+AS R +PN+ + RPAD ETA A+ AVA+ + PS L SRQ L A
Sbjct: 515 DGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTYAVAH-QHPSCLIFSRQNLAFNAR 573
Query: 585 T--SIDGVEKGAYIISD-NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVS 641
T + VEKG Y++ D + +ILI TGS + G A RVVS S
Sbjct: 574 TDAQLANVEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPS 633
Query: 642 WELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIY 701
++FD Q Y+E VLP V RV+IEAG T W K VG +G +GID FG SAPAG ++
Sbjct: 634 SDVFDRQDAEYRERVLPHGVR-RVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGVLF 692
Query: 702 KEFGITAEAVITAAKEV 718
K FG T E VI AK V
Sbjct: 693 KHFGFTVEHVIETAKAV 709
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 530 bits (1366), Expect = e-151, Method: Compositional matrix adjust.
Identities = 316/678 (46%), Positives = 393/678 (57%), Gaps = 44/678 (6%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
T++ A N IR LA+DAV++ANSGHPG+PMG A +G L+ +++NP NP+W +
Sbjct: 38 TTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWAD 97
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
RDRFVLS GHG ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE TPG+E TTGP
Sbjct: 98 RDRFVLSNGHGSMLLYSLLHLTGYD-LPIEELKNFRQLHSKTPGHPEYGITPGVETTTGP 156
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL 260
LGQG+ANAVG+AL E LAA +N+ D +IVDH+TYV LGDG MEGI++EA SLAG L L
Sbjct: 157 LGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGXLMEGISHEACSLAGTLKL 216
Query: 261 GKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI---------------------- 298
KLIA YDDN ISIDGD F ++ KRFE GW+VI
Sbjct: 217 NKLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKRSD 276
Query: 299 -----WVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR 353
T IG G+ KA + VHG+ LGA E+ TR+ LGW + PF +P++V W
Sbjct: 277 KPSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAWDA 336
Query: 354 HVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTY----TPESPAE 409
A G E +WN +G LPA W
Sbjct: 337 KEA-GKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAGANERGETV 395
Query: 410 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQK--DTPEER---NVRFGV 464
ATR SQ + LA LP LLGGSADL SN+T K + D P + ++ +GV
Sbjct: 396 ATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGV 455
Query: 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE 524
RE GM A NG+ LH G P+ TF F+DY R A+R++AL + I+V THDSIGLGE
Sbjct: 456 REFGMSAAINGLVLHG-GYKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLGE 514
Query: 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG 584
DGPTHQ +EH+AS R +PN+ + RPAD ETA A+ AVA+ + PS L SRQ L A
Sbjct: 515 DGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTYAVAH-QHPSCLIFSRQNLAFNAR 573
Query: 585 T--SIDGVEKGAYIISD-NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVS 641
T + VEKG Y++ D + +ILI TGS + G A RVVS S
Sbjct: 574 TDAQLANVEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPS 633
Query: 642 WELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIY 701
++FD Q Y+E VLP V RV+IEAG T W K VG +G +GID FG SAPAG ++
Sbjct: 634 SDVFDRQDAEYRERVLPHGVR-RVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGVLF 692
Query: 702 KEFGITAEAVITAAKEVC 719
K FG T E VI AK V
Sbjct: 693 KHFGFTVEHVIETAKAVL 710
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust.
Identities = 285/663 (42%), Positives = 376/663 (56%), Gaps = 48/663 (7%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+V+TIR LA DAV+K +GHPG M AP+ + L+ MR++P + +W RDRFVLSAGH
Sbjct: 26 AVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGH 85
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
+ Y L+L G+ ++ D+++ R WGSKTPGHPE TPG+E+TTGPLGQG+A+AVG
Sbjct: 86 SSLTLYIQLYLGGF-GLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVG 144
Query: 211 LALAEKHLAARYN---KPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267
+A+A ++ ++ +P DHY YVI DG EG+ +EASSLA LG LI FY
Sbjct: 145 MAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFY 204
Query: 268 DDNHISIDGDTEIAFTENVDKRFEGLGWHV----------------------------IW 299
D N ISI+ DT IA E+ R+ GWHV I
Sbjct: 205 DRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQAVTDRPSFIA 264
Query: 300 VTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEG 358
+ T IG+ +PN ++ HG+ALG EV A +K +G+ P + F V EDV H VA G
Sbjct: 265 LRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARG 324
Query: 359 ATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTC 418
W + + +LP GW+ LP + P S A ATR S
Sbjct: 325 KQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAV 384
Query: 419 LNALAKTLPGLLGGSADLASSNMTLLK---MFGDFQKDTPEE------RNVRFGVREHGM 469
L+AL LP L GGSADLA SN T +K FG T E R + FGVREH M
Sbjct: 385 LSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAM 444
Query: 470 GAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH 529
GAI +GI LH P Y TF F+DYMR A+R++AL + IYV THDSIGLGEDGPTH
Sbjct: 445 GAILSGIVLHGPTRA-YGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH 503
Query: 530 QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRK--RPSILALSRQKLPHLAGTSI 587
QPIEHL++ RA+P + ++RPAD NETA A++ +A R P L L+RQ +P L GT
Sbjct: 504 QPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPVLDGTDA 563
Query: 588 DGVEKGAYIISDN---SSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWEL 644
+GV +G Y++SD G +PDVILI TGS RVVS E
Sbjct: 564 EGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEW 623
Query: 645 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 704
F+ Q Y+++VLP VSARV++EAG W ++VG G+ + I+ +G SA +++E+
Sbjct: 624 FEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEIVSIEHYGESADHKTLFREY 683
Query: 705 GIT 707
G T
Sbjct: 684 GFT 686
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/658 (44%), Positives = 378/658 (57%), Gaps = 52/658 (7%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IRFL++DA KA SGHPG P G A + +L+ + +++NP NP+W NRDRFVLS GHG
Sbjct: 11 NAIRFLSIDATLKAKSGHPGXPXGXADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGS 70
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
L Y+LLHL GYD + +D+KNFRQ SKTPGHPE TPG+E TTGPLGQG+ANAVG A
Sbjct: 71 XLLYSLLHLTGYD-LSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGXA 129
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
L EK L+ RYN PD +++DH+TYV LGDG EG+++EA SLAG LGL KL+AF+DDN+I
Sbjct: 130 LGEKLLSDRYNTPDLKVIDHHTYVFLGDGXLXEGVSHEACSLAGTLGLNKLVAFWDDNNI 189
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVI----------------------------WVTTTI 304
SIDGDT+ F++N +RF GWHVI T I
Sbjct: 190 SIDGDTKGWFSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCKTVI 249
Query: 305 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 364
GFGSP KA + SVHGS L +E + K L W Y+ F +P+DV K+W +G LEA
Sbjct: 250 GFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAR-EKGQALEAN 308
Query: 365 WNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 420
W + S +LP G E A+ Y +P + ATR SQ L
Sbjct: 309 WQGQRNLFKDSPKFDEFE--RVLSKELPVGLESAINDYIASQLSNPVKVATRKASQXVLE 366
Query: 421 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE--RNVRFGVREHGMGAICNGIAL 478
L K P GGSADL SN T G + +E + +GVRE G AI NG++L
Sbjct: 367 VLCKNXPEXFGGSADLTGSNNT--NWSGSVWLNNTQEGANYLSYGVREFGXAAIXNGLSL 424
Query: 479 HSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 538
+ G+ PY TF VF+DY R AIR SAL + V++V +HDSIGLGEDGPTHQPIEH+ S
Sbjct: 425 YG-GIKPYGGTFLVFSDYSRNAIRXSALXKQPVVHVXSHDSIGLGEDGPTHQPIEHVPSL 483
Query: 539 RAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYI 596
R +PN+ + RPAD ET A+K AV ++ PS+ L+RQ L + T + + +G Y+
Sbjct: 484 RLIPNLSVWRPADTIETXIAWKEAVKSKDTPSVXVLTRQNLXPVVQTQHQVANIARGGYL 543
Query: 597 ISDNSSGNKPD--VILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKE 654
+ DN PD + ++ TGS K G + V S E+F Q+ YK+
Sbjct: 544 VKDN-----PDAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHEYKK 598
Query: 655 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAI-GIDRFGASAPAGKIYKEFGITAEAV 711
+V+ + A V +E W K G + GI FG SAPA ++K FG T E +
Sbjct: 599 TVIKDDIPA-VFVEXAQPDXWYKYXPKAGGEVKGIYSFGESAPAEDLFKRFGFTVENI 655
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 255/660 (38%), Positives = 348/660 (52%), Gaps = 58/660 (8%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
+ + ++++ NT+RFL+ D V+KANSGHPG P+G A + +L +++NPKNP W N
Sbjct: 2 NAXNIQILQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYH-LKHNPKNPTWLN 60
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
RDR V S GH L Y+ LHL+GYD + +DLKNFRQ SKTPGHPE T G+E+ TGP
Sbjct: 61 RDRLVFSGGHASALLYSFLHLSGYD-LSLEDLKNFRQLHSKTPGHPE-ISTLGVEIATGP 118
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL 260
LGQG+ANAVG A A K N ++++DH Y + GDG EGI+ EA SLAG L
Sbjct: 119 LGQGVANAVGFAXAAK---KAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKL 175
Query: 261 GKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVT------------------- 301
I YD N+ISI+GD +AF ENV RFE G+ V+ +
Sbjct: 176 DNFILIYDSNNISIEGDVGLAFNENVKXRFEAQGFEVLSINGHDYEEINKALEQAKKSTK 235
Query: 302 -------TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSR 353
TTI G+ S+ HG+ LG + + ++ G+ P FH+P+ K +
Sbjct: 236 PCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFES 295
Query: 354 HVAEGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRN 413
V G EA+W + P K L ATR+
Sbjct: 296 AVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDL----------ATRD 345
Query: 414 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAIC 473
+ LN LAK L G LGGSADL SN T L GDF E +N+ FG+REH AI
Sbjct: 346 SNGEILNVLAKNLEGFLGGSADLGPSNKTELHSXGDF----VEGKNIHFGIREHAXAAIN 401
Query: 474 NGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 533
N A + +P+ ATFF+F++Y++ A RI+AL + ++ THDSIG+GEDGPTHQPIE
Sbjct: 402 NAFARYGI-FLPFSATFFIFSEYLKPAARIAALXKIKHFFIFTHDSIGVGEDGPTHQPIE 460
Query: 534 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG 593
L++FRA PN L RPADG E A+++A+ N PS LSRQKL L V+ G
Sbjct: 461 QLSTFRAXPNFLTFRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGDVKNG 519
Query: 594 AYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYK 653
AY++ ++ L+ +GS K G A VVS +ELF++Q AY+
Sbjct: 520 AYLLKESKEAK---FTLLASGSEVWLCLESANELEKQGFACNVVSXPCFELFEKQDKAYQ 576
Query: 654 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 713
E +L V + +EA + K K GI+ FG S +++ FG + ++
Sbjct: 577 ERLLKGEV---IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSKLVN 630
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 255/654 (38%), Positives = 346/654 (52%), Gaps = 58/654 (8%)
Query: 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL 146
++++ NT+RFL+ D V+KANSGHPG P+G A + +L +++NPKNP W NRDR V
Sbjct: 5 ILQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYH-LKHNPKNPTWLNRDRLVF 63
Query: 147 SAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMA 206
S GH L Y+ LHL+GYD + +DLKNFRQ SKTPGHPE T G+E+ TGPLGQG+A
Sbjct: 64 SGGHASALLYSFLHLSGYD-LSLEDLKNFRQLHSKTPGHPE-ISTLGVEIATGPLGQGVA 121
Query: 207 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 266
NAVG A A K N ++++DH Y + GDG EGI+ EA SLAG L I
Sbjct: 122 NAVGFAXAAK---KAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILI 178
Query: 267 YDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVT------------------------- 301
YD N+ISI+GD +AF ENV RFE G+ V+ +
Sbjct: 179 YDSNNISIEGDVGLAFNENVKXRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIA 238
Query: 302 -TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEGA 359
TTI G+ S+ HG+ LG + + ++ G+ P FH+P+ K + V G
Sbjct: 239 KTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGD 298
Query: 360 TLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 419
EA+W + P K L ATR+ + L
Sbjct: 299 LEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDL----------ATRDSNGEIL 348
Query: 420 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 479
N LAK L G LGGSADL SN T L GDF E +N+ FG+REH AI N A +
Sbjct: 349 NVLAKNLEGFLGGSADLGPSNKTELHSXGDF----VEGKNIHFGIREHAXAAINNAFARY 404
Query: 480 SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 539
+P+ ATFF+F++Y++ A RI+AL + ++ THDSIG+GEDGPTHQPIE L++FR
Sbjct: 405 GI-FLPFSATFFIFSEYLKPAARIAALXKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFR 463
Query: 540 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISD 599
A PN L RPADG E A+++A+ N PS LSRQKL L V+ GAY++ +
Sbjct: 464 AXPNFLTFRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGDVKNGAYLLKE 522
Query: 600 NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA 659
+ L+ +GS K G A VVS +ELF++Q AY+E +L
Sbjct: 523 SKEAK---FTLLASGSEVWLCLESANELEKQGFACNVVSXPCFELFEKQDKAYQERLLKG 579
Query: 660 AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 713
V + +EA + K K GI+ FG S +++ FG + ++
Sbjct: 580 EV---IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSKLVN 627
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 156/654 (23%), Positives = 260/654 (39%), Gaps = 76/654 (11%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLS 147
++ + N +R ++ A A SGHP A + +L+ MRY ++P + DRFVLS
Sbjct: 11 LKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLS 70
Query: 148 AGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMAN 207
GH + YA+ AG+ + E +L N R+ S GHP + +V TG LGQG+
Sbjct: 71 KGHAAPILYAVWAEAGF--LAEAELLNLRKISSDLDGHPVP-KQAFTDVATGSLGQGLGA 127
Query: 208 AVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267
A G+A K+ + + Y +LGDG EG EA + A L L+A
Sbjct: 128 ACGMAYTGKYF---------DKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAIL 178
Query: 268 DDNHISIDGDTEIAFTENV-DKRFEGLGWHVIWV------TTTIGFGSPNKANSYSVHGS 320
D N + + ++ KR E GWH I V FG K ++
Sbjct: 179 DINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA-KHQPTAIIAK 237
Query: 321 ALGAKEVDATRKNLGWPYEPF--HVPEDVKKHWSRHVAEGATLEAEWNXXXXXXXXXXXX 378
+ + W +P ++ E + + + + A
Sbjct: 238 TFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKILA-----------TPPQ 286
Query: 379 XXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLAS 438
I++ ++P +LP+Y ATR L L ++ D +
Sbjct: 287 EDAPSVDIANIRMP-----SLPSYKVGDKI-ATRKAYGQALAKLGHASDRIIALDGDTKN 340
Query: 439 SNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMR 498
S + + F+K+ P +R + + E M +I G A + +P+C+TF F
Sbjct: 341 STFSEI-----FKKEHP-DRFIECYIAEQNMVSIAVGCATRN-RTVPFCSTFAAFFTRAF 393
Query: 499 AAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGA 558
IR++A+ E+ + +H + +GEDGP+ +E LA FR++P + P+DG T A
Sbjct: 394 DQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKA 453
Query: 559 YKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXX 618
++A AN K + SR + + + D A ++ + V +IG G
Sbjct: 454 VELA-ANTKGICFIRTSRPENAIIYNNNEDFQVGQAKVVLKSKDDQ---VTVIGAGVTLH 509
Query: 619 XXXXXXXXXRKGGKAVRVVSFVSWELFDEQ----------------SDAYKESVLPAAVS 662
+K +RV+ + + D + D Y E + AVS
Sbjct: 510 EALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS 569
Query: 663 ARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
+ V E G T + ++R S ++ K FGI +A+ A +
Sbjct: 570 SAVVGEPGITVTH----------LAVNRVPRSGKPAELLKMFGIDRDAIAQAVR 613
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 156/654 (23%), Positives = 260/654 (39%), Gaps = 76/654 (11%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLS 147
++ + N +R ++ A A SGHP A + +L+ MRY ++P + DRFVLS
Sbjct: 13 LKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLS 72
Query: 148 AGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMAN 207
GH + YA+ AG+ + E +L N R+ S GHP + +V TG LGQG+
Sbjct: 73 KGHAAPILYAVWAEAGF--LAEAELLNLRKISSDLDGHPVP-KQAFTDVATGSLGQGLGA 129
Query: 208 AVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267
A G+A K+ + + Y +LGDG EG EA + A L L+A
Sbjct: 130 ACGMAYTGKYF---------DKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAIL 180
Query: 268 DDNHISIDGDTEIAFTENV-DKRFEGLGWHVIWV------TTTIGFGSPNKANSYSVHGS 320
D N + + ++ KR E GWH I V FG K ++
Sbjct: 181 DINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA-KHQPTAIIAK 239
Query: 321 ALGAKEVDATRKNLGWPYEPF--HVPEDVKKHWSRHVAEGATLEAEWNXXXXXXXXXXXX 378
+ + W +P ++ E + + + + A
Sbjct: 240 TFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKILA-----------TPPQ 288
Query: 379 XXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLAS 438
I++ ++P +LP+Y ATR L L ++ D +
Sbjct: 289 EDAPSVDIANIRMP-----SLPSYKVGDKI-ATRKAYGQALAKLGHASDRIIALDGDTKN 342
Query: 439 SNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMR 498
S + + F+K+ P +R + + E M +I G A + +P+C+TF F
Sbjct: 343 STFSEI-----FKKEHP-DRFIECYIAEQNMVSIAVGCATRN-RTVPFCSTFAAFFTRAF 395
Query: 499 AAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGA 558
IR++A+ E+ + +H + +GEDGP+ +E LA FR++P + P+DG T A
Sbjct: 396 DQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKA 455
Query: 559 YKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXX 618
++A AN K + SR + + + D A ++ + V +IG G
Sbjct: 456 VELA-ANTKGICFIRTSRPENAIIYNNNEDFQVGQAKVVLKSKDDQ---VTVIGAGVTLH 511
Query: 619 XXXXXXXXXRKGGKAVRVVSFVSWELFDEQ----------------SDAYKESVLPAAVS 662
+K +RV+ + + D + D Y E + AVS
Sbjct: 512 EALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS 571
Query: 663 ARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
+ V E G T + ++R S ++ K FGI +A+ A +
Sbjct: 572 SAVVGEPGITVTH----------LAVNRVPRSGKPAELLKMFGIDRDAIAQAVR 615
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
RDR + GH YA L G + D + + ++ G + G + E+ +T G
Sbjct: 73 RDRILFDVGHQA---YAHKILTG----RRDQMADIKKEGGIS-GFTKVSESEHDAITVGH 124
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL 260
+ NA+G+ALA D + D + ++GDG G+A A + G +G
Sbjct: 125 ASTSLTNALGMALAR----------DAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGR 174
Query: 261 GKLIAFYDDNHISI 274
K++ +DN +SI
Sbjct: 175 -KMLIVLNDNEMSI 187
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 449 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI---SA 505
+F + P R + G+ E G+AL G+ P A + F RA ++ A
Sbjct: 357 EFSRVHPH-RYLDVGIAEEVAVTTAAGMALQ--GMRPVVAIYSTF--LQRAYDQVLHDVA 411
Query: 506 LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVA 562
+ V + + I +G DG TH + L+ R++P + + P D E G K A
Sbjct: 412 IEHLNVTFCIDRAGI-VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYA 467
>pdb|2QTA|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTA|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTC|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
pdb|2QTC|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
Length = 886
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 20/167 (11%)
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW----GSKTPGHP----ENFETPGIE 195
V GH YA L G + ++ L NFRQ G + HP E ++ P +
Sbjct: 136 LVYFQGHISPGVYARAFLEG--RLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVS 193
Query: 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLA 255
+ GP+G A+ A K+L R K ++ Y LGDG E + A ++A
Sbjct: 194 MGLGPIG-----AIYQAKFLKYLEHRGLKDTSK---QTVYAFLGDGEMDEPESKGAITIA 245
Query: 256 GHLGLGKLIAFYDDNHISIDGDT--EIAFTENVDKRFEGLGWHVIWV 300
L L+ + N +DG ++ FEG GW+VI V
Sbjct: 246 TREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKV 292
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
pdb|1RP7|A Chain A, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|1RP7|B Chain B, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|2G25|A Chain A, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G25|B Chain B, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G28|A Chain A, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G28|B Chain B, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G67|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2G67|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2IEA|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|2IEA|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 20/167 (11%)
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW----GSKTPGHP----ENFETPGIE 195
V GH YA L G + ++ L NFRQ G + HP E ++ P +
Sbjct: 136 LVYFQGHISPGVYARAFLEG--RLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVS 193
Query: 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLA 255
+ GP+G A+ A K+L R K ++ Y LGDG E + A ++A
Sbjct: 194 MGLGPIG-----AIYQAKFLKYLEHRGLKDTSK---QTVYAFLGDGEMDEPESKGAITIA 245
Query: 256 GHLGLGKLIAFYDDNHISIDGDT--EIAFTENVDKRFEGLGWHVIWV 300
L L+ + N +DG ++ FEG GW+VI V
Sbjct: 246 TREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKV 292
>pdb|3LPL|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
pdb|3LPL|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
Length = 886
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 20/167 (11%)
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW----GSKTPGHP----ENFETPGIE 195
V GH YA L G + ++ L NFRQ G + HP E ++ P +
Sbjct: 136 LVYFQGHISPGVYARAFLEG--RLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVS 193
Query: 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLA 255
+ GP+G A+ A K+L R K ++ Y LGDG E + A ++A
Sbjct: 194 MGLGPIG-----AIYQAKFLKYLEHRGLKDTSK---QTVYAFLGDGEMDEPESKGAITIA 245
Query: 256 GHLGLGKLIAFYDDNHISIDGDT--EIAFTENVDKRFEGLGWHVIWV 300
L L+ + N +DG ++ FEG GW+VI V
Sbjct: 246 TREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKV 292
>pdb|3LQ2|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ2|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ4|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
pdb|3LQ4|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
Length = 886
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 20/167 (11%)
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW----GSKTPGHP----ENFETPGIE 195
V GH YA L G + ++ L NFRQ G + HP E ++ P +
Sbjct: 136 LVYFQGHISPGVYARAFLEG--RLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVS 193
Query: 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLA 255
+ GP+G A+ A K+L R K ++ Y LGDG + A ++A
Sbjct: 194 MGLGPIG-----AIYQAKFLKYLEHRGLKDTSK---QTVYAFLGDGEMDAPESKGAITIA 245
Query: 256 GHLGLGKLIAFYDDNHISIDGDT--EIAFTENVDKRFEGLGWHVIWV 300
L L+ + N +DG ++ FEG GW+VI V
Sbjct: 246 TREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKV 292
>pdb|3B4U|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
pdb|3B4U|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
Length = 294
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 407 PAEATRNLSQTCLNALAKTLPGLLGGSADLA---SSNMTLLKMFGDFQKDTPEERNVRFG 463
P+ LS + L PG++ G D + S LLK GD +ER++ G
Sbjct: 142 PSVTMVTLSVELVGRLKAAFPGIVTGVKDSSGNWSHTERLLKEHGDLAILIGDERDLARG 201
Query: 464 VREHGMGAICNGIA 477
VR G GAI +G+A
Sbjct: 202 VRLGGQGAI-SGVA 214
>pdb|2EBF|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 657 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 695
LP S+RV IE W+ + +GK +G+ +F +A
Sbjct: 540 LPDVASSRVPIEVTELENWQVLTPPQGKILGLKQFKLTA 578
>pdb|2EBH|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 657 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 695
LP S+RV IE W+ + +GK +G+ +F +A
Sbjct: 540 LPDVASSRVPIEVTELENWQVLTPPQGKILGLKQFKLTA 578
>pdb|2EC5|A Chain A, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
pdb|2EC5|B Chain B, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 657 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 695
LP S+RV IE W+ + +GK +G+ +F +A
Sbjct: 540 LPDVASSRVPIEVTELENWQVLTPPQGKILGLKQFKLTA 578
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 449 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI---SA 505
+F + P+ R + E G+A+ G P A + F RA ++ A
Sbjct: 354 EFSRKFPD-RYFDVAIAEQHAVTFAAGLAIG--GYKPIVAIYSTF--LQRAYDQVLHDVA 408
Query: 506 LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 554
+ + V++ + I +G DG THQ L+ R +P ++ P+D NE
Sbjct: 409 IQKLPVLFAIDRAGI-VGADGQTHQGAFDLSYLRCIPEXVIXTPSDENE 456
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,848,339
Number of Sequences: 62578
Number of extensions: 863274
Number of successful extensions: 2043
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1888
Number of HSP's gapped (non-prelim): 51
length of query: 719
length of database: 14,973,337
effective HSP length: 106
effective length of query: 613
effective length of database: 8,340,069
effective search space: 5112462297
effective search space used: 5112462297
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)