Query 005021
Match_columns 719
No_of_seqs 264 out of 2479
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 16:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0021 TktA Transketolase [Ca 100.0 1E-134 3E-139 1111.3 62.5 632 85-719 3-662 (663)
2 PRK12754 transketolase; Review 100.0 2E-125 5E-130 1088.9 62.8 625 89-719 5-663 (663)
3 PRK12753 transketolase; Review 100.0 6E-124 1E-128 1084.2 62.5 625 89-719 5-663 (663)
4 PLN02790 transketolase 100.0 1E-122 3E-127 1073.8 65.5 624 95-719 1-654 (654)
5 PTZ00089 transketolase; Provis 100.0 1E-120 2E-125 1059.5 65.3 623 86-719 4-658 (661)
6 TIGR00232 tktlase_bact transke 100.0 2E-120 4E-125 1056.1 64.8 623 90-719 2-653 (653)
7 KOG0523 Transketolase [Carbohy 100.0 1E-118 2E-123 974.2 45.7 584 83-719 5-625 (632)
8 COG1154 Dxs Deoxyxylulose-5-ph 100.0 2E-110 5E-115 915.2 39.9 568 85-719 19-622 (627)
9 PRK05899 transketolase; Review 100.0 6E-106 1E-110 936.0 65.3 595 82-719 2-624 (624)
10 PLN02225 1-deoxy-D-xylulose-5- 100.0 6E-104 1E-108 900.6 48.2 560 85-719 93-690 (701)
11 PLN02582 1-deoxy-D-xylulose-5- 100.0 2E-100 4E-105 879.4 49.7 570 84-719 47-666 (677)
12 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 2.8E-99 6E-104 873.6 49.9 545 82-719 13-616 (617)
13 PRK12571 1-deoxy-D-xylulose-5- 100.0 7.7E-96 2E-100 847.3 51.3 544 82-719 21-627 (641)
14 PRK13012 2-oxoacid dehydrogena 100.0 8.2E-95 1.8E-99 844.9 59.4 612 82-719 83-866 (896)
15 PLN02234 1-deoxy-D-xylulose-5- 100.0 7.3E-96 2E-100 834.6 44.6 505 85-679 81-614 (641)
16 PRK05444 1-deoxy-D-xylulose-5- 100.0 7.4E-95 1.6E-99 836.0 50.2 546 82-719 19-580 (580)
17 PRK12315 1-deoxy-D-xylulose-5- 100.0 4.3E-94 9.3E-99 826.1 49.2 543 82-719 15-580 (581)
18 TIGR03186 AKGDH_not_PDH alpha- 100.0 3.6E-93 7.8E-98 827.3 55.5 610 82-719 69-858 (889)
19 PRK09405 aceE pyruvate dehydro 100.0 1E-88 2.2E-93 790.2 55.9 609 82-719 75-861 (891)
20 TIGR00759 aceE pyruvate dehydr 100.0 1.9E-71 4.2E-76 637.2 54.9 613 82-719 69-855 (885)
21 PF00456 Transketolase_N: Tran 100.0 7.3E-68 1.6E-72 566.4 22.8 303 89-392 2-332 (332)
22 COG3958 Transketolase, C-termi 100.0 1.1E-65 2.4E-70 519.7 27.9 295 408-719 6-312 (312)
23 PRK05261 putative phosphoketol 100.0 9.2E-59 2E-63 534.2 47.9 572 102-717 43-739 (785)
24 COG3959 Transketolase, N-termi 100.0 1E-54 2.2E-59 424.3 22.0 204 85-300 7-211 (243)
25 COG2609 AceE Pyruvate dehydrog 100.0 4.7E-51 1E-55 447.7 44.5 614 82-719 72-857 (887)
26 CHL00144 odpB pyruvate dehydro 100.0 4.9E-52 1.1E-56 446.2 29.0 290 409-719 4-323 (327)
27 PRK11892 pyruvate dehydrogenas 100.0 5.2E-51 1.1E-55 454.0 30.1 290 408-719 141-462 (464)
28 PRK09212 pyruvate dehydrogenas 100.0 5.1E-51 1.1E-55 439.0 28.2 293 409-719 4-323 (327)
29 PLN02683 pyruvate dehydrogenas 100.0 1.2E-50 2.5E-55 439.5 30.7 302 400-719 18-350 (356)
30 cd02017 TPP_E1_EcPDC_like Thia 100.0 1.7E-50 3.7E-55 432.7 27.2 243 86-337 2-353 (386)
31 PTZ00182 3-methyl-2-oxobutanat 100.0 3.5E-49 7.5E-54 427.9 29.5 294 408-719 34-355 (355)
32 COG0022 AcoB Pyruvate/2-oxoglu 100.0 5.8E-45 1.3E-49 371.6 25.9 291 409-719 2-322 (324)
33 PF13292 DXP_synthase_N: 1-deo 100.0 1.6E-46 3.4E-51 379.9 9.9 233 82-353 13-256 (270)
34 cd02012 TPP_TK Thiamine pyroph 100.0 9E-45 2E-49 379.0 23.3 226 93-330 1-254 (255)
35 KOG0524 Pyruvate dehydrogenase 100.0 3E-38 6.4E-43 313.9 20.8 291 408-719 34-358 (359)
36 PRK09404 sucA 2-oxoglutarate d 100.0 8.1E-35 1.8E-39 343.4 44.5 455 198-678 313-877 (924)
37 cd02007 TPP_DXS Thiamine pyrop 100.0 5.9E-37 1.3E-41 306.9 17.2 159 108-299 1-159 (195)
38 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 2.1E-34 4.6E-39 338.2 35.9 450 194-675 310-881 (929)
39 cd07033 TPP_PYR_DXS_TK_like Py 100.0 5.1E-36 1.1E-40 290.2 16.2 154 414-576 2-156 (156)
40 PF02779 Transket_pyr: Transke 100.0 1.7E-33 3.6E-38 278.6 12.3 168 408-580 2-176 (178)
41 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 1.1E-32 2.5E-37 268.6 14.9 155 414-576 2-167 (167)
42 smart00861 Transket_pyr Transk 100.0 2.9E-30 6.3E-35 253.1 17.4 158 410-577 1-167 (168)
43 KOG0525 Branched chain alpha-k 100.0 2.8E-30 6.2E-35 253.3 15.5 288 407-718 39-359 (362)
44 COG3957 Phosphoketolase [Carbo 100.0 7.8E-27 1.7E-31 259.0 28.6 496 106-645 58-666 (793)
45 cd02011 TPP_PK Thiamine pyroph 99.9 3.4E-22 7.4E-27 201.7 12.9 137 148-300 2-154 (227)
46 COG1071 AcoA Pyruvate/2-oxoglu 99.8 2.5E-18 5.3E-23 183.7 17.4 126 193-328 130-276 (358)
47 PLN02374 pyruvate dehydrogenas 99.7 1.1E-15 2.4E-20 169.5 23.2 144 143-300 139-292 (433)
48 PF00676 E1_dh: Dehydrogenase 99.7 3.7E-16 8.1E-21 166.8 17.9 160 142-320 47-230 (300)
49 CHL00149 odpA pyruvate dehydro 99.7 2E-15 4.4E-20 163.7 21.5 146 143-300 73-226 (341)
50 cd02000 TPP_E1_PDC_ADC_BCADC T 99.6 1.2E-14 2.7E-19 155.0 20.9 160 109-300 26-195 (293)
51 PLN02269 Pyruvate dehydrogenas 99.6 9.1E-15 2E-19 159.2 19.2 136 143-300 83-227 (362)
52 TIGR03182 PDH_E1_alph_y pyruva 99.6 4E-14 8.8E-19 152.3 22.0 138 144-300 56-201 (315)
53 PF02780 Transketolase_C: Tran 99.6 2E-16 4.4E-21 147.3 3.2 110 593-711 1-124 (124)
54 TIGR03181 PDH_E1_alph_x pyruva 99.6 7.1E-14 1.5E-18 152.0 20.8 138 141-300 75-213 (341)
55 PF09364 XFP_N: XFP N-terminal 99.6 1.5E-14 3.2E-19 152.6 12.1 206 106-335 45-324 (379)
56 KOG0225 Pyruvate dehydrogenase 99.6 1.4E-14 3E-19 149.5 11.7 121 191-324 157-296 (394)
57 cd02016 TPP_E1_OGDC_like Thiam 99.4 1.1E-12 2.3E-17 136.3 12.9 103 193-300 107-213 (265)
58 TIGR03336 IOR_alpha indolepyru 99.3 3.3E-11 7.2E-16 140.7 19.7 231 461-717 50-334 (595)
59 KOG1182 Branched chain alpha-k 99.3 1.3E-12 2.9E-17 133.6 6.2 96 195-300 189-285 (432)
60 PRK07119 2-ketoisovalerate fer 99.3 1.3E-10 2.8E-15 126.9 19.6 202 457-670 49-307 (352)
61 cd06586 TPP_enzyme_PYR Pyrimid 99.2 1.5E-10 3.3E-15 111.2 11.7 119 454-576 32-154 (154)
62 PRK08659 2-oxoglutarate ferred 99.2 1.1E-09 2.5E-14 120.5 19.7 205 457-670 49-334 (376)
63 cd00568 TPP_enzymes Thiamine p 99.1 2.4E-10 5.3E-15 111.4 8.4 91 194-300 41-142 (168)
64 PRK09627 oorA 2-oxoglutarate-a 99.1 5.7E-09 1.2E-13 114.7 18.9 199 465-671 55-336 (375)
65 PRK09622 porA pyruvate flavodo 99.0 1.1E-08 2.4E-13 114.0 19.5 201 465-674 64-332 (407)
66 PRK12270 kgd alpha-ketoglutara 99.0 1.2E-07 2.5E-12 111.0 27.3 537 107-675 516-1178(1228)
67 cd02004 TPP_BZL_OCoD_HPCL Thia 98.8 7.6E-09 1.6E-13 101.8 7.9 88 197-300 46-145 (172)
68 PRK08366 vorA 2-ketoisovalerat 98.7 3.9E-07 8.4E-12 100.8 18.3 202 464-674 56-324 (390)
69 TIGR03710 OAFO_sf 2-oxoacid:ac 98.7 4E-07 8.7E-12 105.7 18.8 212 457-678 237-532 (562)
70 PRK08367 porA pyruvate ferredo 98.7 8E-07 1.7E-11 98.5 18.0 203 464-675 57-327 (394)
71 cd02008 TPP_IOR_alpha Thiamine 98.6 4.4E-08 9.6E-13 97.1 7.0 88 197-300 49-147 (178)
72 cd02002 TPP_BFDC Thiamine pyro 98.6 7.1E-08 1.5E-12 95.4 6.1 86 199-300 49-152 (178)
73 cd03371 TPP_PpyrDC Thiamine py 98.5 2.6E-07 5.6E-12 92.4 7.3 86 196-297 45-132 (188)
74 PF03894 XFP: D-xylulose 5-pho 98.4 4.9E-06 1.1E-10 80.4 14.6 150 413-564 2-178 (179)
75 cd02015 TPP_AHAS Thiamine pyro 98.4 4.8E-07 1E-11 90.3 6.3 87 198-300 49-147 (186)
76 cd02003 TPP_IolD Thiamine pyro 98.4 7.1E-07 1.5E-11 90.5 7.2 88 197-300 46-157 (205)
77 cd03372 TPP_ComE Thiamine pyro 98.3 1.1E-06 2.4E-11 87.2 7.8 86 198-300 41-129 (179)
78 cd02014 TPP_POX Thiamine pyrop 98.3 1.2E-06 2.7E-11 86.7 7.2 88 197-300 49-146 (178)
79 cd02005 TPP_PDC_IPDC Thiamine 98.3 1.5E-06 3.3E-11 86.5 7.0 88 197-300 48-146 (183)
80 TIGR03297 Ppyr-DeCO2ase phosph 98.3 5.4E-06 1.2E-10 91.0 11.7 97 182-300 210-309 (361)
81 TIGR03846 sulfopy_beta sulfopy 98.2 2.3E-06 5E-11 85.1 7.5 85 198-299 41-128 (181)
82 TIGR02176 pyruv_ox_red pyruvat 98.2 4.5E-05 9.9E-10 95.2 18.5 204 464-674 58-330 (1165)
83 cd02013 TPP_Xsc_like Thiamine 98.2 3.1E-06 6.7E-11 85.3 6.7 88 197-300 51-149 (196)
84 PRK07092 benzoylformate decarb 98.2 3.6E-06 7.8E-11 97.5 8.0 87 198-300 406-503 (530)
85 KOG0451 Predicted 2-oxoglutara 98.1 0.0004 8.7E-09 77.0 21.9 249 416-674 571-864 (913)
86 cd02001 TPP_ComE_PpyrDC Thiami 98.1 6.3E-06 1.4E-10 80.1 7.3 86 198-300 41-128 (157)
87 PRK11864 2-ketoisovalerate fer 98.1 6.9E-06 1.5E-10 87.3 7.9 73 193-276 63-135 (300)
88 cd02010 TPP_ALS Thiamine pyrop 98.1 7.9E-06 1.7E-10 80.9 7.1 88 197-300 46-143 (177)
89 PF02775 TPP_enzyme_C: Thiamin 98.0 6.3E-06 1.4E-10 79.5 5.4 89 196-300 25-127 (153)
90 PRK06163 hypothetical protein; 98.0 1.3E-05 2.9E-10 81.0 7.6 87 198-300 56-146 (202)
91 cd02006 TPP_Gcl Thiamine pyrop 98.0 1.1E-05 2.3E-10 81.7 6.4 62 197-274 55-116 (202)
92 PRK08266 hypothetical protein; 97.9 1.7E-05 3.8E-10 92.1 7.1 87 198-300 401-498 (542)
93 PRK06112 acetolactate synthase 97.8 3.9E-05 8.4E-10 89.9 7.8 87 198-300 436-533 (578)
94 cd02009 TPP_SHCHC_synthase Thi 97.8 4E-05 8.8E-10 75.7 6.5 85 199-300 51-148 (175)
95 PRK08199 thiamine pyrophosphat 97.8 3.4E-05 7.4E-10 90.0 7.0 87 198-300 414-511 (557)
96 PRK08327 acetolactate synthase 97.8 3.4E-05 7.3E-10 90.2 6.6 89 198-300 429-536 (569)
97 PRK06546 pyruvate dehydrogenas 97.7 7.2E-05 1.6E-09 87.6 7.9 87 198-300 407-503 (578)
98 PRK07710 acetolactate synthase 97.7 6E-05 1.3E-09 88.2 6.7 86 199-300 424-521 (571)
99 PRK06725 acetolactate synthase 97.7 7.1E-05 1.5E-09 87.5 7.2 87 198-300 421-518 (570)
100 PRK07586 hypothetical protein; 97.7 7.2E-05 1.6E-09 86.4 7.1 87 198-300 384-488 (514)
101 PRK06882 acetolactate synthase 97.7 6.3E-05 1.4E-09 88.1 6.7 88 197-300 419-518 (574)
102 PRK08527 acetolactate synthase 97.6 9E-05 2E-09 86.6 7.3 87 198-300 413-511 (563)
103 PRK12474 hypothetical protein; 97.6 9.3E-05 2E-09 85.6 7.4 87 198-300 388-492 (518)
104 PRK07524 hypothetical protein; 97.6 7.7E-05 1.7E-09 86.6 6.7 87 198-300 406-502 (535)
105 PRK08155 acetolactate synthase 97.6 0.00011 2.3E-09 86.0 7.3 87 198-300 418-516 (564)
106 PRK09124 pyruvate dehydrogenas 97.6 0.00014 2.9E-09 85.3 7.8 88 197-300 406-503 (574)
107 PRK06154 hypothetical protein; 97.5 0.00015 3.3E-09 84.7 7.7 87 198-300 430-525 (565)
108 PRK08322 acetolactate synthase 97.5 0.00014 3E-09 84.8 7.3 88 197-300 404-501 (547)
109 TIGR01504 glyox_carbo_lig glyo 97.5 0.00012 2.6E-09 86.0 6.5 61 198-274 417-477 (588)
110 PRK06048 acetolactate synthase 97.5 0.00016 3.5E-09 84.4 7.5 86 199-300 414-511 (561)
111 PRK07282 acetolactate synthase 97.5 0.00014 3.1E-09 85.0 6.9 87 198-300 417-515 (566)
112 TIGR02418 acolac_catab acetola 97.5 0.00016 3.6E-09 84.0 7.4 88 197-300 406-503 (539)
113 COG0674 PorA Pyruvate:ferredox 97.5 0.0042 9E-08 68.6 18.0 181 464-651 54-303 (365)
114 PRK06965 acetolactate synthase 97.5 0.00019 4E-09 84.4 7.5 87 198-300 436-534 (587)
115 PRK06466 acetolactate synthase 97.5 0.00018 3.9E-09 84.3 7.4 87 198-300 422-520 (574)
116 COG4231 Indolepyruvate ferredo 97.5 0.0064 1.4E-07 69.6 19.2 202 457-672 58-307 (640)
117 TIGR00118 acolac_lg acetolacta 97.5 0.00013 2.8E-09 85.2 6.0 87 198-300 411-509 (558)
118 PLN02573 pyruvate decarboxylas 97.5 0.00016 3.4E-09 84.8 6.6 88 197-300 426-523 (578)
119 PRK09107 acetolactate synthase 97.5 0.0002 4.4E-09 84.2 7.4 87 198-300 429-527 (595)
120 PRK05858 hypothetical protein; 97.5 0.00018 3.9E-09 83.7 6.9 87 198-300 406-503 (542)
121 PRK08979 acetolactate synthase 97.5 0.00018 3.8E-09 84.3 6.8 87 198-300 420-518 (572)
122 PLN02470 acetolactate synthase 97.5 0.00019 4.2E-09 84.2 7.1 87 198-300 425-530 (585)
123 CHL00099 ilvB acetohydroxyacid 97.5 0.00023 5.1E-09 83.5 7.8 88 197-300 428-528 (585)
124 PRK07064 hypothetical protein; 97.5 0.00019 4.1E-09 83.6 7.0 87 198-300 404-501 (544)
125 TIGR02720 pyruv_oxi_spxB pyruv 97.5 0.00019 4.2E-09 84.1 7.0 87 198-300 407-503 (575)
126 PRK07979 acetolactate synthase 97.5 0.00022 4.7E-09 83.6 7.4 87 198-300 420-518 (574)
127 PRK06276 acetolactate synthase 97.4 0.00017 3.6E-09 84.8 6.3 87 198-300 418-516 (586)
128 TIGR03457 sulphoacet_xsc sulfo 97.4 0.00021 4.5E-09 83.9 6.7 87 198-300 429-527 (579)
129 PRK11269 glyoxylate carboligas 97.4 0.00019 4.1E-09 84.4 6.3 62 197-274 417-478 (591)
130 COG3961 Pyruvate decarboxylase 97.4 0.00014 3E-09 80.9 4.8 65 198-278 410-474 (557)
131 PRK06456 acetolactate synthase 97.4 0.00025 5.3E-09 83.1 6.7 87 198-300 420-518 (572)
132 cd03375 TPP_OGFOR Thiamine pyr 97.4 0.0002 4.4E-09 71.9 5.1 61 199-274 51-111 (193)
133 PRK08611 pyruvate oxidase; Pro 97.4 0.00028 6.1E-09 82.7 7.1 87 198-300 407-503 (576)
134 TIGR03393 indolpyr_decarb indo 97.4 0.00024 5.2E-09 82.6 6.5 83 198-296 403-492 (539)
135 PRK08617 acetolactate synthase 97.4 0.00027 5.9E-09 82.4 6.6 87 198-300 413-509 (552)
136 PRK06457 pyruvate dehydrogenas 97.4 0.00042 9E-09 80.8 8.1 88 198-300 395-492 (549)
137 PRK07449 2-succinyl-5-enolpyru 97.4 0.00016 3.4E-09 84.6 4.6 86 198-300 424-522 (568)
138 PRK08978 acetolactate synthase 97.3 0.00028 6.1E-09 82.2 6.5 86 199-300 401-498 (548)
139 cd03376 TPP_PFOR_porB_like Thi 97.3 0.00029 6.4E-09 73.0 6.0 60 198-273 61-121 (235)
140 PRK07418 acetolactate synthase 97.3 0.00032 7E-09 82.8 7.1 87 198-300 433-532 (616)
141 PRK08273 thiamine pyrophosphat 97.3 0.00041 9E-09 81.6 7.5 88 198-300 414-519 (597)
142 PRK07525 sulfoacetaldehyde ace 97.3 0.00032 7E-09 82.4 6.5 88 197-300 433-532 (588)
143 TIGR03394 indol_phenyl_DC indo 97.3 0.00055 1.2E-08 79.5 7.8 85 199-300 403-493 (535)
144 PRK07789 acetolactate synthase 97.2 0.00052 1.1E-08 81.0 6.3 87 198-300 446-548 (612)
145 TIGR03254 oxalate_oxc oxalyl-C 97.1 0.00097 2.1E-08 77.8 8.1 86 198-300 416-511 (554)
146 PRK09259 putative oxalyl-CoA d 97.1 0.00083 1.8E-08 78.7 7.5 86 198-300 423-519 (569)
147 COG0028 IlvB Thiamine pyrophos 97.1 0.0011 2.3E-08 77.1 7.5 89 196-300 405-504 (550)
148 PF01855 POR_N: Pyruvate flavo 97.0 0.0018 3.9E-08 66.9 7.8 109 463-575 42-153 (230)
149 cd02018 TPP_PFOR Thiamine pyro 97.0 0.001 2.2E-08 69.1 6.0 91 198-299 63-171 (237)
150 TIGR03336 IOR_alpha indolepyru 97.0 0.00088 1.9E-08 78.8 6.2 88 198-300 402-500 (595)
151 PRK05778 2-oxoglutarate ferred 96.9 0.0011 2.4E-08 71.0 5.1 61 199-274 70-130 (301)
152 PRK11866 2-oxoacid ferredoxin 96.8 0.0022 4.8E-08 67.9 6.7 84 199-299 59-161 (279)
153 PRK09628 oorB 2-oxoglutarate-a 96.8 0.0014 3.1E-08 69.4 4.9 60 200-274 69-128 (277)
154 TIGR02177 PorB_KorB 2-oxoacid: 96.8 0.0012 2.6E-08 70.2 4.3 59 201-274 55-113 (287)
155 PRK11867 2-oxoglutarate ferred 96.7 0.0015 3.3E-08 69.5 4.3 60 199-274 69-129 (286)
156 KOG1184 Thiamine pyrophosphate 96.6 0.0027 5.9E-08 70.7 5.1 95 184-295 401-500 (561)
157 cd07035 TPP_PYR_POX_like Pyrim 96.5 0.019 4.1E-07 55.2 10.4 115 457-576 35-155 (155)
158 PRK11865 pyruvate ferredoxin o 96.5 0.0055 1.2E-07 65.4 7.2 66 194-272 64-130 (299)
159 cd07034 TPP_PYR_PFOR_IOR-alpha 96.5 0.03 6.4E-07 54.2 11.5 114 456-575 41-159 (160)
160 PRK11869 2-oxoacid ferredoxin 96.3 0.0039 8.4E-08 66.1 4.2 58 201-273 62-119 (280)
161 PRK13030 2-oxoacid ferredoxin 96.2 0.062 1.3E-06 67.0 14.8 204 458-672 75-342 (1159)
162 PF02776 TPP_enzyme_N: Thiamin 96.0 0.042 9.1E-07 54.0 9.9 117 457-577 40-162 (172)
163 TIGR03845 sulfopyru_alph sulfo 96.0 0.043 9.3E-07 53.3 9.4 108 463-577 40-155 (157)
164 PRK09193 indolepyruvate ferred 95.5 0.14 3.1E-06 63.7 13.9 199 458-672 83-350 (1165)
165 PLN02980 2-oxoglutarate decarb 95.4 0.021 4.7E-07 74.6 6.5 87 197-300 757-862 (1655)
166 TIGR03297 Ppyr-DeCO2ase phosph 95.3 0.11 2.4E-06 57.3 10.7 116 457-579 27-155 (361)
167 cd07037 TPP_PYR_MenD Pyrimidin 94.7 0.22 4.8E-06 48.7 9.7 114 458-575 37-161 (162)
168 PRK13029 2-oxoacid ferredoxin 94.6 0.36 7.7E-06 60.3 13.5 197 458-672 86-353 (1186)
169 cd02018 TPP_PFOR Thiamine pyro 93.9 2.6 5.7E-05 43.7 16.3 118 455-574 51-200 (237)
170 TIGR02418 acolac_catab acetola 93.7 0.37 8E-06 56.2 10.8 114 458-577 38-158 (539)
171 PRK07092 benzoylformate decarb 93.6 0.37 8E-06 56.0 10.6 117 457-577 49-171 (530)
172 KOG1185 Thiamine pyrophosphate 93.5 0.12 2.6E-06 57.6 5.8 62 195-272 426-487 (571)
173 cd07039 TPP_PYR_POX Pyrimidine 93.3 1 2.2E-05 44.0 11.5 114 458-577 40-159 (164)
174 PRK05858 hypothetical protein; 93.1 1 2.2E-05 52.5 13.2 116 457-577 43-164 (542)
175 cd03376 TPP_PFOR_porB_like Thi 92.7 3.5 7.7E-05 42.7 15.0 89 484-574 81-197 (235)
176 PRK08322 acetolactate synthase 92.6 0.75 1.6E-05 53.7 11.1 114 458-577 40-160 (547)
177 PRK07586 hypothetical protein; 92.1 0.87 1.9E-05 52.7 10.8 115 458-577 41-161 (514)
178 PRK06965 acetolactate synthase 92.0 1.1 2.4E-05 52.9 11.6 115 457-577 60-181 (587)
179 TIGR02177 PorB_KorB 2-oxoacid: 91.6 4.3 9.3E-05 43.4 14.4 147 412-576 13-185 (287)
180 cd02004 TPP_BZL_OCoD_HPCL Thia 91.4 2.8 6E-05 41.0 12.0 117 454-574 36-169 (172)
181 cd02010 TPP_ALS Thiamine pyrop 91.1 6.3 0.00014 38.9 14.2 118 454-575 36-168 (177)
182 PRK11864 2-ketoisovalerate fer 90.8 6.9 0.00015 42.1 15.0 110 467-577 72-207 (300)
183 PRK06466 acetolactate synthase 90.8 1.3 2.8E-05 52.2 10.5 116 457-577 43-164 (574)
184 PRK11866 2-oxoacid ferredoxin 90.8 5.2 0.00011 42.6 14.0 107 467-576 62-191 (279)
185 PRK07064 hypothetical protein; 90.5 2 4.2E-05 50.2 11.6 116 458-577 43-166 (544)
186 cd02014 TPP_POX Thiamine pyrop 90.4 8.7 0.00019 37.8 14.5 117 454-574 39-170 (178)
187 cd02001 TPP_ComE_PpyrDC Thiami 90.3 4.2 9.2E-05 39.3 11.9 111 454-574 33-152 (157)
188 PRK08266 hypothetical protein; 90.1 1.3 2.7E-05 51.8 9.6 117 457-577 44-168 (542)
189 PRK07524 hypothetical protein; 90.1 2 4.4E-05 50.0 11.2 116 458-577 41-164 (535)
190 PF09363 XFP_C: XFP C-terminal 89.8 2.1 4.7E-05 43.0 9.4 110 605-716 34-159 (203)
191 TIGR00118 acolac_lg acetolacta 89.6 2.4 5.2E-05 49.7 11.4 115 458-577 41-161 (558)
192 PRK11865 pyruvate ferredoxin o 89.6 5.2 0.00011 43.0 12.8 109 464-575 69-209 (299)
193 cd02008 TPP_IOR_alpha Thiamine 89.3 15 0.00033 36.1 15.3 101 471-574 58-174 (178)
194 PRK08978 acetolactate synthase 89.3 2.1 4.5E-05 50.0 10.5 114 458-577 40-160 (548)
195 PRK08199 thiamine pyrophosphat 89.2 2.3 5E-05 49.8 10.9 115 457-577 47-168 (557)
196 cd07038 TPP_PYR_PDC_IPDC_like 89.1 3.6 7.9E-05 40.0 10.5 115 458-576 37-162 (162)
197 PRK06457 pyruvate dehydrogenas 88.9 2.5 5.4E-05 49.4 10.9 116 457-577 40-160 (549)
198 PRK07789 acetolactate synthase 88.9 2.9 6.2E-05 49.6 11.5 114 457-577 70-191 (612)
199 cd02009 TPP_SHCHC_synthase Thi 88.9 5.3 0.00011 39.3 11.6 115 455-574 40-172 (175)
200 PRK07979 acetolactate synthase 88.9 2.4 5.2E-05 49.9 10.7 114 458-577 44-164 (574)
201 PRK06456 acetolactate synthase 88.8 2.7 5.8E-05 49.4 11.1 114 458-577 45-165 (572)
202 PRK06112 acetolactate synthase 88.8 1.7 3.7E-05 51.1 9.4 116 457-577 50-171 (578)
203 TIGR01504 glyox_carbo_lig glyo 88.8 3.2 7E-05 49.0 11.7 114 458-577 43-164 (588)
204 PRK08611 pyruvate oxidase; Pro 88.5 2.8 6E-05 49.4 10.9 114 458-577 45-164 (576)
205 PRK07710 acetolactate synthase 88.4 2.5 5.4E-05 49.7 10.5 116 456-577 53-175 (571)
206 PRK08155 acetolactate synthase 88.2 2.6 5.7E-05 49.4 10.5 115 457-577 52-173 (564)
207 PRK08617 acetolactate synthase 87.8 3 6.5E-05 48.8 10.6 115 457-577 43-164 (552)
208 PRK11269 glyoxylate carboligas 87.4 3.8 8.3E-05 48.4 11.2 115 457-577 43-165 (591)
209 PRK07449 2-succinyl-5-enolpyru 87.4 1.9 4.1E-05 50.6 8.6 116 458-577 49-174 (568)
210 TIGR00173 menD 2-succinyl-5-en 87.4 2.6 5.6E-05 47.8 9.4 116 458-578 40-167 (432)
211 PRK07525 sulfoacetaldehyde ace 87.1 4 8.7E-05 48.2 11.2 115 457-577 44-164 (588)
212 COG4032 Predicted thiamine-pyr 86.9 1.4 3.1E-05 41.5 5.6 107 465-575 50-162 (172)
213 TIGR03457 sulphoacet_xsc sulfo 86.8 5 0.00011 47.3 11.7 115 457-578 40-161 (579)
214 PRK09107 acetolactate synthase 86.5 4.5 9.8E-05 47.8 11.1 116 457-578 50-172 (595)
215 PRK07282 acetolactate synthase 86.1 4.6 0.0001 47.4 10.9 115 457-577 49-170 (566)
216 PLN02470 acetolactate synthase 86.0 4.7 0.0001 47.6 11.0 115 457-577 52-173 (585)
217 PRK11867 2-oxoglutarate ferred 86.0 16 0.00034 39.2 13.8 150 410-576 27-201 (286)
218 TIGR02720 pyruv_oxi_spxB pyruv 85.9 3.3 7.2E-05 48.7 9.6 115 457-577 39-159 (575)
219 cd02003 TPP_IolD Thiamine pyro 85.9 21 0.00045 36.0 14.2 115 454-574 36-181 (205)
220 PRK06276 acetolactate synthase 85.9 5 0.00011 47.3 11.1 115 458-577 40-160 (586)
221 PRK09124 pyruvate dehydrogenas 85.8 5.7 0.00012 46.7 11.5 113 458-577 43-162 (574)
222 TIGR03254 oxalate_oxc oxalyl-C 85.5 3.4 7.5E-05 48.3 9.4 116 458-577 42-164 (554)
223 cd02015 TPP_AHAS Thiamine pyro 85.4 12 0.00027 36.9 12.1 117 454-574 38-171 (186)
224 cd03375 TPP_OGFOR Thiamine pyr 85.4 13 0.00028 37.2 12.3 104 469-575 56-182 (193)
225 PF02775 TPP_enzyme_C: Thiamin 85.1 14 0.0003 35.3 11.9 116 454-573 16-152 (153)
226 PRK08527 acetolactate synthase 85.0 6.2 0.00013 46.3 11.3 114 458-577 43-163 (563)
227 cd02013 TPP_Xsc_like Thiamine 84.9 6.2 0.00013 39.6 9.8 117 454-574 41-176 (196)
228 PRK06882 acetolactate synthase 84.8 6.6 0.00014 46.2 11.4 115 458-577 44-164 (574)
229 PRK06725 acetolactate synthase 84.8 6.1 0.00013 46.5 11.1 115 457-577 53-174 (570)
230 PRK09259 putative oxalyl-CoA d 84.6 6.2 0.00013 46.4 11.1 117 457-577 48-171 (569)
231 PRK06048 acetolactate synthase 84.2 6.4 0.00014 46.2 10.9 115 457-577 46-167 (561)
232 PRK07418 acetolactate synthase 83.9 7.8 0.00017 46.0 11.6 115 457-577 61-182 (616)
233 cd00568 TPP_enzymes Thiamine p 83.8 6.2 0.00013 37.9 9.0 101 469-574 51-166 (168)
234 PRK08327 acetolactate synthase 83.6 5.8 0.00013 46.7 10.2 116 458-577 52-181 (569)
235 cd02006 TPP_Gcl Thiamine pyrop 82.9 7.3 0.00016 39.2 9.4 118 454-574 45-191 (202)
236 COG1013 PorB Pyruvate:ferredox 82.9 2.1 4.5E-05 45.9 5.6 60 201-279 72-132 (294)
237 cd02002 TPP_BFDC Thiamine pyro 82.8 32 0.00069 33.5 13.7 115 454-574 38-176 (178)
238 cd02012 TPP_TK Thiamine pyroph 82.8 12 0.00025 39.3 11.1 103 469-574 110-224 (255)
239 PRK06546 pyruvate dehydrogenas 82.7 7.4 0.00016 45.9 10.7 114 458-577 43-162 (578)
240 PRK12474 hypothetical protein; 82.5 9.3 0.0002 44.4 11.2 114 458-577 45-165 (518)
241 cd02007 TPP_DXS Thiamine pyrop 81.8 20 0.00044 36.0 12.0 98 469-574 80-187 (195)
242 PRK08979 acetolactate synthase 81.8 6.1 0.00013 46.5 9.5 115 457-577 43-164 (572)
243 COG4231 Indolepyruvate ferredo 81.8 4.5 9.7E-05 47.1 7.9 121 456-578 420-555 (640)
244 CHL00099 ilvB acetohydroxyacid 81.7 5.3 0.00011 47.2 8.9 114 458-577 53-173 (585)
245 cd03371 TPP_PpyrDC Thiamine py 81.3 34 0.00073 34.1 13.3 114 455-574 40-160 (188)
246 PRK12315 1-deoxy-D-xylulose-5- 81.2 8.7 0.00019 45.3 10.4 111 459-574 109-240 (581)
247 PLN02790 transketolase 80.1 10 0.00023 45.3 10.7 76 496-574 153-235 (654)
248 PLN02573 pyruvate decarboxylas 79.8 9.8 0.00021 44.9 10.3 115 458-577 56-182 (578)
249 COG0028 IlvB Thiamine pyrophos 79.6 12 0.00027 43.7 10.9 165 456-629 39-225 (550)
250 PTZ00089 transketolase; Provis 79.6 9.3 0.0002 45.8 10.1 82 490-574 157-246 (661)
251 COG1071 AcoA Pyruvate/2-oxoglu 79.3 12 0.00026 41.1 9.9 103 468-574 144-258 (358)
252 TIGR03846 sulfopy_beta sulfopy 79.0 34 0.00073 33.9 12.4 112 455-574 34-153 (181)
253 COG0567 SucA 2-oxoglutarate de 78.9 5.9 0.00013 48.0 8.0 187 458-650 628-830 (906)
254 PRK08273 thiamine pyrophosphat 78.0 10 0.00022 45.0 9.7 115 457-577 43-164 (597)
255 PRK05778 2-oxoglutarate ferred 77.7 15 0.00033 39.6 10.1 103 469-574 75-200 (301)
256 PLN02980 2-oxoglutarate decarb 77.6 8.1 0.00018 51.2 9.5 116 457-576 340-466 (1655)
257 PRK11869 2-oxoacid ferredoxin 77.0 15 0.00032 39.2 9.6 105 468-575 64-191 (280)
258 TIGR03181 PDH_E1_alph_x pyruva 76.3 11 0.00025 41.3 8.9 87 484-574 145-243 (341)
259 KOG0450 2-oxoglutarate dehydro 75.9 32 0.0007 40.6 12.3 254 420-679 660-965 (1017)
260 TIGR03393 indolpyr_decarb indo 75.3 6.3 0.00014 46.0 6.9 115 458-578 41-167 (539)
261 PRK09628 oorB 2-oxoglutarate-a 75.2 91 0.002 33.3 15.0 106 468-576 72-200 (277)
262 PF00676 E1_dh: Dehydrogenase 74.3 12 0.00027 40.2 8.3 78 496-574 139-222 (300)
263 TIGR03394 indol_phenyl_DC indo 73.0 22 0.00047 41.6 10.6 117 458-578 40-166 (535)
264 PRK05444 1-deoxy-D-xylulose-5- 72.3 24 0.00053 41.6 10.8 102 469-574 122-239 (580)
265 PRK12753 transketolase; Review 71.9 17 0.00038 43.5 9.6 76 496-574 162-243 (663)
266 KOG4166 Thiamine pyrophosphate 68.5 9.1 0.0002 42.5 5.6 87 198-300 523-620 (675)
267 CHL00149 odpA pyruvate dehydro 67.7 20 0.00044 39.4 8.3 87 484-574 158-256 (341)
268 PRK06163 hypothetical protein; 65.6 1.1E+02 0.0024 30.9 12.6 114 455-574 49-170 (202)
269 cd01460 vWA_midasin VWA_Midasi 64.9 27 0.00059 37.0 8.2 69 232-300 165-241 (266)
270 PRK06154 hypothetical protein; 63.9 48 0.001 39.0 11.0 113 457-577 55-176 (565)
271 TIGR03182 PDH_E1_alph_y pyruva 63.3 38 0.00082 36.8 9.3 88 484-574 133-231 (315)
272 PRK05899 transketolase; Review 62.7 57 0.0012 38.9 11.4 81 490-574 159-245 (624)
273 PLN02269 Pyruvate dehydrogenas 62.6 51 0.0011 36.5 10.3 77 496-574 176-256 (362)
274 cd02000 TPP_E1_PDC_ADC_BCADC T 62.4 41 0.0009 36.0 9.3 88 484-574 127-225 (293)
275 cd02005 TPP_PDC_IPDC Thiamine 61.4 88 0.0019 30.9 10.9 119 454-574 38-171 (183)
276 PRK12754 transketolase; Review 61.3 37 0.0008 40.8 9.4 76 496-574 162-243 (663)
277 TIGR00232 tktlase_bact transke 60.7 35 0.00076 40.9 9.2 76 496-574 158-239 (653)
278 cd03372 TPP_ComE Thiamine pyro 58.1 78 0.0017 31.2 9.8 110 455-574 34-152 (179)
279 TIGR00204 dxs 1-deoxy-D-xylulo 56.4 43 0.00094 39.9 8.9 103 469-574 116-271 (617)
280 PRK12571 1-deoxy-D-xylulose-5- 56.2 63 0.0014 38.7 10.3 102 470-574 125-280 (641)
281 COG3962 Acetolactate synthase 54.3 10 0.00022 42.6 3.0 61 194-271 439-499 (617)
282 KOG1185 Thiamine pyrophosphate 52.4 1.3E+02 0.0029 34.4 11.1 113 454-573 418-556 (571)
283 PLN02374 pyruvate dehydrogenas 49.5 64 0.0014 36.7 8.4 89 484-574 224-322 (433)
284 PRK13030 2-oxoacid ferredoxin 47.5 79 0.0017 40.4 9.5 119 455-574 459-600 (1159)
285 COG1165 MenD 2-succinyl-6-hydr 45.0 43 0.00093 38.8 6.1 55 205-276 428-482 (566)
286 cd00860 ThrRS_anticodon ThrRS 42.7 99 0.0022 26.0 6.9 58 607-670 3-61 (91)
287 cd02017 TPP_E1_EcPDC_like Thia 39.7 3.1E+02 0.0068 30.7 11.6 51 496-549 163-218 (386)
288 PF10740 DUF2529: Protein of u 38.6 77 0.0017 31.2 5.9 83 553-638 25-115 (172)
289 PF04430 DUF498: Protein of un 36.5 27 0.00059 31.6 2.4 36 605-640 53-89 (110)
290 PF00456 Transketolase_N: Tran 36.3 68 0.0015 35.1 5.9 76 496-574 159-240 (332)
291 PRK13029 2-oxoacid ferredoxin 35.4 1.6E+02 0.0036 37.6 9.5 120 455-575 486-629 (1186)
292 KOG0225 Pyruvate dehydrogenase 35.2 1.1E+02 0.0025 33.2 7.0 103 466-574 169-284 (394)
293 PF03129 HGTP_anticodon: Antic 35.1 1.3E+02 0.0027 25.8 6.4 41 607-649 1-45 (94)
294 cd00858 GlyRS_anticodon GlyRS 34.4 1.4E+02 0.0031 27.1 7.0 58 606-670 27-87 (121)
295 PF12500 TRSP: TRSP domain C t 34.1 63 0.0014 31.4 4.6 33 605-637 57-89 (155)
296 PLN02582 1-deoxy-D-xylulose-5- 34.1 2.1E+02 0.0045 34.6 9.9 104 470-574 150-317 (677)
297 PRK09193 indolepyruvate ferred 32.8 2E+02 0.0044 36.8 9.8 119 455-574 472-614 (1165)
298 PF03853 YjeF_N: YjeF-related 31.1 82 0.0018 30.8 5.0 44 606-649 27-70 (169)
299 COG1165 MenD 2-succinyl-6-hydr 31.0 2.1E+02 0.0046 33.3 8.8 150 415-575 11-173 (566)
300 COG0021 TktA Transketolase [Ca 30.3 1.2E+02 0.0027 35.8 6.9 74 499-574 167-245 (663)
301 cd01452 VWA_26S_proteasome_sub 30.1 1.7E+02 0.0037 29.3 7.1 34 232-266 108-142 (187)
302 PF00070 Pyr_redox: Pyridine n 29.4 88 0.0019 26.0 4.3 39 608-649 2-42 (80)
303 cd03028 GRX_PICOT_like Glutare 29.4 78 0.0017 27.3 4.1 37 605-641 7-47 (90)
304 cd03027 GRX_DEP Glutaredoxin ( 28.9 2.4E+02 0.0052 22.8 6.8 66 607-677 2-67 (73)
305 PRK10329 glutaredoxin-like pro 28.9 2.1E+02 0.0046 24.2 6.5 33 608-641 3-35 (81)
306 PF03033 Glyco_transf_28: Glyc 28.7 1.1E+02 0.0024 27.9 5.3 38 608-645 1-40 (139)
307 PLN02234 1-deoxy-D-xylulose-5- 28.7 3.8E+02 0.0082 32.2 10.7 106 468-574 181-318 (641)
308 cd02016 TPP_E1_OGDC_like Thiam 27.9 2.8E+02 0.006 29.5 8.5 83 491-574 150-243 (265)
309 cd00859 HisRS_anticodon HisRS 27.9 1.1E+02 0.0024 25.2 4.7 33 606-638 2-35 (91)
310 cd05125 Mth938_2P1-like Mth938 27.0 49 0.0011 30.4 2.4 36 605-640 54-90 (114)
311 TIGR02189 GlrX-like_plant Glut 26.6 3.1E+02 0.0067 24.1 7.5 35 606-641 8-42 (99)
312 PF01565 FAD_binding_4: FAD bi 24.5 5.5E+02 0.012 23.5 9.3 79 545-631 3-85 (139)
313 TIGR00365 monothiol glutaredox 24.0 1.1E+02 0.0023 27.0 4.0 37 605-641 11-51 (97)
314 cd00248 Mth938-like Mth938-lik 23.7 53 0.0012 29.7 2.0 35 606-640 53-88 (109)
315 COG3380 Predicted NAD/FAD-depe 22.8 1.1E+02 0.0024 32.7 4.2 31 606-639 2-32 (331)
316 cd03377 TPP_PFOR_PNO Thiamine 22.5 91 0.002 34.5 3.8 37 232-271 152-189 (365)
317 cd05560 Xcc1710_like Xcc1710_l 22.2 71 0.0015 29.0 2.5 36 605-640 52-88 (109)
318 COG3959 Transketolase, N-termi 21.4 8.2E+02 0.018 25.4 10.0 101 471-574 126-238 (243)
319 COG3960 Glyoxylate carboligase 21.2 62 0.0013 35.0 2.1 59 197-272 417-475 (592)
320 cd03418 GRX_GRXb_1_3_like Glut 21.1 4.3E+02 0.0093 21.1 6.9 65 608-677 2-67 (75)
321 cd00861 ProRS_anticodon_short 20.8 1.4E+02 0.0031 25.3 4.1 40 607-648 3-46 (94)
322 cd07033 TPP_PYR_DXS_TK_like Py 20.5 4.1E+02 0.0088 25.4 7.6 51 245-298 74-128 (156)
323 COG3962 Acetolactate synthase 20.4 3.8E+02 0.0082 30.8 7.9 169 462-633 61-259 (617)
No 1
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-134 Score=1111.31 Aligned_cols=632 Identities=59% Similarity=0.969 Sum_probs=601.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
.+..+++++.||.+++++|.++++||||.+||++||.++||.++|+|||+||+|+||||||||.||++|++|++++|+||
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (719)
. ++.|||+.|||++|++||||+...+|||+.+||+|||||++|||||||.++++++||+|++++.||++||++||||++
T Consensus 83 ~-ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclm 161 (663)
T COG0021 83 D-LSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLM 161 (663)
T ss_pred C-CCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHh
Confidence 5 799999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE------------------------
Q 005021 245 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------ 300 (719)
Q Consensus 245 eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v------------------------ 300 (719)
||+++||+.+|++++|+|||+|+|+|++|||+.++..+.+++.+||++|||+++.+
T Consensus 162 EGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPt 241 (663)
T COG0021 162 EGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPT 241 (663)
T ss_pred cccHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCe
Confidence 99999999999999999999999999999999999989999999999999999966
Q ss_pred ----eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcC
Q 005021 301 ----TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKY 376 (719)
Q Consensus 301 ----~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 376 (719)
+|++|+|.+.++++..+||.|++.++++.++++++|+.++|.+|++++.+|+....+|+..+.+|++++..|++++
T Consensus 242 lI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~ 321 (663)
T COG0021 242 LIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKY 321 (663)
T ss_pred EEEEEeeeecCCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999998888999999999998666688899999999999999999
Q ss_pred chhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCC
Q 005021 377 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 456 (719)
Q Consensus 377 p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p 456 (719)
|+.+.++.+.+++++|..|...+|++.......+||++++++|..+++..|+++..+||+.+|+++.+++-.+|..+.|+
T Consensus 322 Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~ 401 (663)
T COG0021 322 PELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYA 401 (663)
T ss_pred hHHHHHHHHHhcccCchhHHHhhhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCC
Confidence 99999999999999999997778887654345899999999999999999999999999999999988887888766899
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
+|+|.+||+|++|.++++|||++|. ++||..||..|++|++++||+.|+|++||++|.|||++++|+||||||++|+++
T Consensus 402 gr~i~~GVREf~M~AimNGialhGg-~~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa 480 (663)
T COG0021 402 GRYIHFGVREFAMAAIMNGIALHGG-FIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLA 480 (663)
T ss_pred CCeeEEeeHHHHHHHHHHhHHHhcC-ceeecceehhhHhhhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHH
Confidence 9999999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHh
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSE 616 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~ 616 (719)
.||+|||+.|++|||++|+..+++.|+.+.++|++|+++|+++|.++.++.+.+.+|+|++.+..+ ..+|++||++|++
T Consensus 481 ~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnlp~l~~t~~~~~~kGaYvl~~~~~-~~pd~iliAtGSE 559 (663)
T COG0021 481 SLRAIPNLSVIRPADANETAAAWKYALERKDGPTALILTRQNLPVLERTDLEGVAKGAYVLKDSGG-EDPDVILIATGSE 559 (663)
T ss_pred HhhccCCceeEecCChHHHHHHHHHHHhcCCCCeEEEEecCCCCccCCCccccccCccEEEeecCC-CCCCEEEEecccH
Confidence 999999999999999999999999999877999999999999999987767788999999988521 1489999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCCCC
Q 005021 617 LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAP 696 (719)
Q Consensus 617 v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~g~ 696 (719)
|++|++|++.|+++|+.++||+++|+++||+|...|+++|++.+....|.+|.+...||.+|++.....||+|.|+.||+
T Consensus 560 V~lAv~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g~~g~~ig~~~FG~Sap 639 (663)
T COG0021 560 VELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVGLDGAVIGMDSFGASAP 639 (663)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhcCCCCcEEeeccCcCCCC
Confidence 99999999999988899999999999999999999999999988665699999999999999987778999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Q 005021 697 AGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 697 ~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.++|+++||+|+|+|+++++++|
T Consensus 640 ~~~l~~~fGft~e~vv~~~~~~l 662 (663)
T COG0021 640 GDELFKEFGFTVENVVAKAKSLL 662 (663)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhh
Confidence 99999999999999999999875
No 2
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=2.2e-125 Score=1088.89 Aligned_cols=625 Identities=51% Similarity=0.868 Sum_probs=573.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCC
Q 005021 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (719)
Q Consensus 89 ~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~ 168 (719)
++++++||+++++|+.++++||+|++||++||+++||..+||+||+||+|++|||||+|+||++|++|+++++.|+. ++
T Consensus 5 ~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~-~~ 83 (663)
T PRK12754 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYD-LP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCC-CC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999982 38
Q ss_pred hhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHH
Q 005021 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (719)
Q Consensus 169 ~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (719)
.++|++|||++|.++|||++..+||++++||++|||++.|+|||+|.|+++++||++++++.+++|||++||||++||++
T Consensus 84 ~e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12754 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHH
Confidence 99999999999999999998789999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEE-E---------------------------
Q 005021 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW-V--------------------------- 300 (719)
Q Consensus 249 ~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~-v--------------------------- 300 (719)
|||+++|++++|+|||+|||+|+++||++++....+++.+||++|||++++ |
T Consensus 164 ~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~ 243 (663)
T PRK12754 164 HEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMC 243 (663)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCccCcchhhccCccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999999999999999999999999999876678999999999999999 6
Q ss_pred eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhh
Q 005021 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 380 (719)
Q Consensus 301 ~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 380 (719)
+|++|+|.++++++..+|+.++++++++.++++++|+.++|.+|++++.+|+. ..+++....+|++.+++|++.+|+..
T Consensus 244 ~T~~g~G~~~~e~~~~~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~-~~~~~~~~~~w~~~~~~~~~~~p~~~ 322 (663)
T PRK12754 244 KTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA-KEAGQAKESAWNEKFAAYAKAYPQEA 322 (663)
T ss_pred EeeeccCccccCCCccccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHCHHHH
Confidence 79999999988889999999999999999999999988889999999999976 56788888999999999999999988
Q ss_pred hhhhhhhcCCCCCcccccCCCCC----CCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCC
Q 005021 381 AEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 456 (719)
Q Consensus 381 ~~~~~~~~g~~p~~~~~~~~~~~----~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p 456 (719)
.++.+.+++++|.+|...++.|. ...+..+||++++++|.++++.+|+++++++|+.+|+.+.+++.+.|++ +||
T Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~-~~p 401 (663)
T PRK12754 323 AEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINE-DAA 401 (663)
T ss_pred HHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccc-cCC
Confidence 88887777777877765444442 1223578999999999999999999999999999888877777788976 799
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
+|||++||+||+|+++|+|||++|. ++||+++|++|++|+++|||+.||+++||++|+||+|+++|+||+|||++||++
T Consensus 402 ~r~i~~GIaE~~Mv~iaaGlA~~~G-~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla 480 (663)
T PRK12754 402 GNYIHYGVREFGMTAIANGIALHGG-FLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA 480 (663)
T ss_pred CCeEeeccchhhHHHHHhhHHhcCC-CeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHH
Confidence 9999999999999999999999653 899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCCCCCCCCEEEEEeC
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIGTG 614 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~~~~g~dvtIva~G 614 (719)
+||+||||+|++|+|+.|++.+++.++...++|+|||++|+++|.++... ...+.+|+|.+.+.. +++|++||++|
T Consensus 481 ~lR~iPn~~V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~p~~~~~~~~~~~~~~G~~vl~~~~--~~~dv~iiatG 558 (663)
T PRK12754 481 SLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCA--GQPELIFIATG 558 (663)
T ss_pred HHhcCCCcEEecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCccchhhhcccCcEEEEecC--CCCCEEEEEEC
Confidence 99999999999999999999999999975589999999999998776421 245778888776531 12599999999
Q ss_pred HhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCC
Q 005021 615 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGAS 694 (719)
Q Consensus 615 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~ 694 (719)
+||++|++||+.|+++||+++|||++|++|||++...|++.+++......|++|++...||.++++.....||+|.|+.|
T Consensus 559 s~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~~~~~~~~igi~~FG~S 638 (663)
T PRK12754 559 SEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGES 638 (663)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeecccccchhhhccCCCCEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999998775335999999999999998765567999999999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 695 APAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 695 g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+.++|+++||||+|+|+++|+++|
T Consensus 639 g~~~~l~~~~G~t~e~I~~~~~~~~ 663 (663)
T PRK12754 639 APAELLFEEFGFTVDNVVAKAKALL 663 (663)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999999999875
No 3
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=5.9e-124 Score=1084.23 Aligned_cols=625 Identities=54% Similarity=0.897 Sum_probs=567.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCC
Q 005021 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (719)
Q Consensus 89 ~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~ 168 (719)
+++|++||+++++|+.++++||+|++||++||+++||+.+||+||+||+|++|||||||+||++|++|++++++|+. ++
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~-~~ 83 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYD-LP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCC-CC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999982 38
Q ss_pred hhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHH
Q 005021 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (719)
Q Consensus 169 ~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (719)
.++|++|||.+|.++|||+...+|+++++||++|||++.|+|||+|.|+++.+||++++++.+++|||++||||++||++
T Consensus 84 ~e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12753 84 IEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHH
Confidence 99999999999999999998789999999999999999999999999999988999888888999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEE-E---------------------------
Q 005021 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW-V--------------------------- 300 (719)
Q Consensus 249 ~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~-v--------------------------- 300 (719)
|||+|+|++++|+|||+|||||+++||++++....+++.++|++|||++++ |
T Consensus 164 ~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~ 243 (663)
T PRK12753 164 HEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIIC 243 (663)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 999999999999999999999999999999877788999999999999996 7
Q ss_pred eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhh
Q 005021 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 380 (719)
Q Consensus 301 ~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 380 (719)
+|+||+|.+.++++..||+.+++++++++++++++|+.++|.+|++++.+|+. ..+|......|.+.++.|++.+|+..
T Consensus 244 ~T~kG~G~~~~e~~~~~H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~-~~~~~~~~~~w~~~~~~~~~~~p~~~ 322 (663)
T PRK12753 244 RTIIGFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA-REKGEKAEQAWNEKFAAYKKAYPELA 322 (663)
T ss_pred EEeecCCCCcccCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh-hhhchHHHHHHHHHHHHHHHHCHHHH
Confidence 79999999888888999999999999999999999988889999999999974 56677788889999999999899888
Q ss_pred hhhhhhhcCCCCCcccccCCCCC----CCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCC
Q 005021 381 AEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 456 (719)
Q Consensus 381 ~~~~~~~~g~~p~~~~~~~~~~~----~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p 456 (719)
.++.+.+++.+|.+|...+++|. ....+.++|++++++|.++++.+|+++++++|+.+|+.+.+.+.+.|.+ +||
T Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~-~~p 401 (663)
T PRK12753 323 AEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKE-DPA 401 (663)
T ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhh-cCC
Confidence 77777666666767765444442 1224678999999999999999999999999999888776666678975 899
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
+||||+|||||+|+++|+|||++|. ++||+++|++|++|++||||+.||+++||++|++|+|+++|+||+|||++||++
T Consensus 402 ~r~i~~GIaEq~mv~~aaGlA~~~G-~~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla 480 (663)
T PRK12753 402 GNYIHYGVREFGMTAIANGIAHHGG-FVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLA 480 (663)
T ss_pred CCEEEeeecHHHHHHHHHHHHHhCC-CeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHH
Confidence 9999999999999999999999542 799999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCCCCCCCCEEEEEeC
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIGTG 614 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~~~~g~dvtIva~G 614 (719)
+||.||||+|++|+|++|++.+++.|+++.++|+|||++|+++|.++... ...+..|+|++++.+ +++|++||++|
T Consensus 481 ~lR~iPn~~v~~PaD~~E~~~~~~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~~~G~~vl~~~~--~~~dv~iia~G 558 (663)
T PRK12753 481 SLRLTPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQERTPEQVKNIARGGYILKDSG--GKPDLILIATG 558 (663)
T ss_pred HHhcCCCCEEEccCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCCCCcccchhhccCCcEEEeccC--CCCCEEEEEeC
Confidence 99999999999999999999999999975689999999999988766432 234778887776531 13699999999
Q ss_pred HhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCC
Q 005021 615 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGAS 694 (719)
Q Consensus 615 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~ 694 (719)
+||++|++|+++|+++||+++|||++|++|||++.+.|++.+++......|++|++...+|.++.+.+..++|+|+|+.+
T Consensus 559 s~v~~al~Aa~~L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~~~~~~~~~~~~iGvd~Fg~s 638 (663)
T PRK12753 559 SEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGES 638 (663)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccChHHHHHHHcCCCCeEEEeCCCcCc
Confidence 99999999999999999999999999999999999989888876533224999999888898887667788999999999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 695 APAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 695 g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+.++|+++||||+++|+++|++++
T Consensus 639 g~~~~l~~~~Glt~~~Iv~~i~~~~ 663 (663)
T PRK12753 639 APADKLFPFFGFTVENIVAKAKKLL 663 (663)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999999998875
No 4
>PLN02790 transketolase
Probab=100.00 E-value=1.4e-122 Score=1073.79 Aligned_cols=624 Identities=87% Similarity=1.396 Sum_probs=565.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhh
Q 005021 95 IRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKN 174 (719)
Q Consensus 95 iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~ 174 (719)
||.++++|+.++++||+|++||++||+++||+++|+|||+||+|++|||||||+||++|++|++|+++|+..++.++|++
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999984358899999
Q ss_pred hhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHH
Q 005021 175 FRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSL 254 (719)
Q Consensus 175 ~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~ 254 (719)
|||.+|.++|||++.++||++++|||+|||++.|+|||+|.|+++++|++++.++.+++|||++|||+++||++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 99999999999999899999999999999999999999999998887887766677899999999999999999999999
Q ss_pred hhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE-----------------------------eeeec
Q 005021 255 AGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-----------------------------TTTIG 305 (719)
Q Consensus 255 A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v-----------------------------~t~~g 305 (719)
|++++|+|||+|||||+|+|+++++....+++.++|++|||++++| +|+||
T Consensus 161 A~~~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~kG 240 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIG 240 (654)
T ss_pred HHHhCCCCEEEEEecCCccccCCcccccchhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEEeec
Confidence 9999999999999999999999998777889999999999999987 78999
Q ss_pred CCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhhhhhh
Q 005021 306 FGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKS 385 (719)
Q Consensus 306 ~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~ 385 (719)
+|.+.+++...||+.++++++++..+++++|+.+||++++++..+|.....++......|.+++..|...+|+....+.+
T Consensus 241 ~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 320 (654)
T PLN02790 241 YGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKS 320 (654)
T ss_pred CCCccccCCCCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99888888889999999999999999999998889999988888886544456666778999998888778887777777
Q ss_pred hhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccC-CCCCcccccc
Q 005021 386 ISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT-PEERNVRFGV 464 (719)
Q Consensus 386 ~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~-~p~R~~d~GI 464 (719)
.+++++|.+|...++.|....+..+||++++++|.++++.+|+++++++|+.+|+.+...++.+|++ + ||+||||+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~-~~~p~Rfi~~GI 399 (654)
T PLN02790 321 LISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQK-DTPEERNVRFGV 399 (654)
T ss_pred HhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhh-cCCCCCeEEeee
Confidence 7788888888766777754445679999999999999999999999999998887766677788976 6 6999999999
Q ss_pred ccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCe
Q 005021 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNI 544 (719)
Q Consensus 465 aE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl 544 (719)
|||+|+++|+|||++|.|++||++||++|++|+++|||+.|++++||+|+++|||+++|+||+|||++||+++||+||||
T Consensus 400 aEq~mv~~AaGlA~~G~G~~P~~~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl 479 (654)
T PLN02790 400 REHGMGAICNGIALHSSGLIPYCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNI 479 (654)
T ss_pred chHHHHHHHHHHHhcCCCcEEEEEecHHHHHHHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCc
Confidence 99999999999999752279999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHH
Q 005021 545 LMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAA 624 (719)
Q Consensus 545 ~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa 624 (719)
+|++|+|++|++.++++++.+.++|+|||++|+++|.++.+..+.+.+|+|++.+.+.+.++|++||++|+||++|++||
T Consensus 480 ~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~G~~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa 559 (654)
T PLN02790 480 LMLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNLPGTSIEGVEKGGYVISDNSSGNKPDLILIGTGSELEIAAKAA 559 (654)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCCCCCcccccccCcEEEEeCCCCCCCCEEEEEcCHHHHHHHHHH
Confidence 99999999999999999997568999999999998876543335688999887664200027999999999999999999
Q ss_pred HHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCCCCHHHHHHHh
Q 005021 625 EELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 704 (719)
Q Consensus 625 ~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~~ 704 (719)
++|+++||+++|||++|++|||++.+.|++.+++.....+|++|+++..||+++++.+..++|+|+|+.+|+.++|+++|
T Consensus 560 ~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~~~~~igvd~Fg~sg~~~~l~~~~ 639 (654)
T PLN02790 560 KELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILYKEF 639 (654)
T ss_pred HHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCCCceEEEeCCCcCcCCHHHHHHHh
Confidence 99999999999999999999999999888888854444579999999999988876666789999999999999999999
Q ss_pred CCCHHHHHHHHHHhC
Q 005021 705 GITAEAVITAAKEVC 719 (719)
Q Consensus 705 gl~~e~I~~~i~~~l 719 (719)
|||+++|+++|+++|
T Consensus 640 Glt~e~I~~~i~~~~ 654 (654)
T PLN02790 640 GFTVENVVAAAKSLL 654 (654)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999999875
No 5
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=9.6e-121 Score=1059.55 Aligned_cols=623 Identities=56% Similarity=0.947 Sum_probs=555.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCC
Q 005021 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (719)
Q Consensus 86 ~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~ 165 (719)
.+.+++|++||.++++|+.++++||+|++||++||+++||+.+|||||+||+|++|||||||+||++|++|++|+++|+.
T Consensus 4 ~~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~ 83 (661)
T PTZ00089 4 AIDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYD 83 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCC
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred CCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh
Q 005021 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (719)
Q Consensus 166 ~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (719)
++.++|++||+.+|.++|||++.++||++++|||+|||++.|+|||+|.|+++.+||+++.+..+++|||++|||+++|
T Consensus 84 -~~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~e 162 (661)
T PTZ00089 84 -LSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQE 162 (661)
T ss_pred -CCHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhh
Confidence 3889999999999999999998889999999999999999999999999999999998877778999999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE-------------------------
Q 005021 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------- 300 (719)
Q Consensus 246 G~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v------------------------- 300 (719)
|++|||+|+|++++|+|||+|||||+|+|+++++....+++.++|++|||+++.|
T Consensus 163 G~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~ 242 (661)
T PTZ00089 163 GVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPK 242 (661)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECCCcccccCcccccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcE
Confidence 9999999999999999999999999999999998767789999999999999987
Q ss_pred ----eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCC-CCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhc
Q 005021 301 ----TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWP-YEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKK 375 (719)
Q Consensus 301 ----~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~-~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 375 (719)
+|+||+|+ .+++...||+.+++.++++.++++++++ ..+|++++++..+|.....++......|+..+..|..+
T Consensus 243 ~I~~~T~kG~G~-~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 321 (661)
T PTZ00089 243 LIIVKTTIGYGS-SKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAA 321 (661)
T ss_pred EEEEEeeecCCC-CcCCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 68999994 6777889999999999999999999994 44699998888878654444555677899999989888
Q ss_pred CchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC
Q 005021 376 YPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP 455 (719)
Q Consensus 376 ~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~ 455 (719)
+|+...++.+..++++|.+|...+++|....+..+||++++++|.++++.+|+++++++|+.+|+++..++..+|++ +|
T Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~-~~ 400 (661)
T PTZ00089 322 FPKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTK-AS 400 (661)
T ss_pred CHHHHHHHHHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccc-cC
Confidence 88887777776777777777555666643345688999999999999999999999999998887654444467876 79
Q ss_pred C-CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 456 E-ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 456 p-~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
| +||||+|||||||+++|+|||++|. ++||+++|++|++|++||||+.||+++||+|+++|+|+++|+||+|||++||
T Consensus 401 P~~rfi~~GIaEq~mv~~AaGlA~~~G-~~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~ied 479 (661)
T PTZ00089 401 PEGRYIRFGVREHAMCAIMNGIAAHGG-FIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVET 479 (661)
T ss_pred CCCCeeeeeecHHHHHHHHHHHHHcCC-CeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHH
Confidence 9 8999999999999999999999542 8999999999999999999999999999999999999999999999999999
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTG 614 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G 614 (719)
+++||+||||+|++|+|++|++.++++|+.+.++|+|||++|+++|.++..+...+..|.|.+++.. +++|++||++|
T Consensus 480 ia~lR~iPn~~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~g~~vl~~~~--~~~dv~iia~G 557 (661)
T PTZ00089 480 LALLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPLPGSSIEGVLKGAYIVVDFT--NSPQLILVASG 557 (661)
T ss_pred HHHHhcCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCcCCCccccccCceEEEeccC--CCCCEEEEeeC
Confidence 9999999999999999999999999999966789999999999988765432222333456665421 14899999999
Q ss_pred HhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhcc-CCCceEEEEccccccCchhhhcCCceEEeeCcCCC
Q 005021 615 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP-AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGA 693 (719)
Q Consensus 615 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~-~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~ 693 (719)
++|.+|++|+++|++ ||+++|||++|++|||++.+.|++.|++ ++.. +|++|++...||..+.. .++|++.|+.
T Consensus 558 ~~v~~Al~Aa~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~-~vtiE~~~~~g~~~~~~---~~igv~~Fg~ 632 (661)
T PTZ00089 558 SEVSLCVEAAKALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVP-VLSVEAYVSFGWEKYSH---VHVGISGFGA 632 (661)
T ss_pred HHHHHHHHHHHHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCc-eEeHHhhHHHHHHhcCC---eEEECCCccc
Confidence 999999999999999 9999999999999999999888878887 4544 59999999999976543 5799966999
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 694 SAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 694 ~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+|+.++|+++||||+++|+++|++++
T Consensus 633 sg~~~~l~~~~Gl~~e~I~~~i~~~l 658 (661)
T PTZ00089 633 SAPANALYKHFGFTVENVVEKARALA 658 (661)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999999999999999999998864
No 6
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1.7e-120 Score=1056.11 Aligned_cols=623 Identities=57% Similarity=0.957 Sum_probs=565.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCCh
Q 005021 90 KSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQE 169 (719)
Q Consensus 90 ~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~ 169 (719)
+.+++||+++++|+.++++||+|++||++||+++||+.+|||||+||+|++|||||+|+||++|++|+++++.|++ ++.
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~-~~~ 80 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYD-LSI 80 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCC-CCH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999984 488
Q ss_pred hHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHH
Q 005021 170 DDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN 249 (719)
Q Consensus 170 ~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~ 249 (719)
++|++||+.+|.++|||++..+||++++||++|||++.|+|+|+|.|+++.+||+++++..+++|||++||||++||.+|
T Consensus 81 e~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~ 160 (653)
T TIGR00232 81 EDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISY 160 (653)
T ss_pred HHHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHH
Confidence 99999999999999999987899999999999999999999999999999889988877889999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE----------------------------e
Q 005021 250 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV----------------------------T 301 (719)
Q Consensus 250 EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v----------------------------~ 301 (719)
||+++|++++|+|||+|||+|+++||++++....+++.++|++|||++++| +
T Consensus 161 EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~ 240 (653)
T TIGR00232 161 EVASLAGHLKLGKLIVLYDSNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVT 240 (653)
T ss_pred HHHHHHHHhCCCcEEEEEeCCCeeeccccccccCccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 999999999999999999999999999997656789999999999999998 7
Q ss_pred eeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHH-hhcchhHHHHHHHHHhhhhhcCchhh
Q 005021 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEYEKKYPEEA 380 (719)
Q Consensus 302 t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~ 380 (719)
|++|+|.+..+++..+|+.++++++++.++++++++.++|.+|++++++|+.. ..+++.....|.+.++.|+..+|+..
T Consensus 241 T~~g~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~ 320 (653)
T TIGR00232 241 TTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELA 320 (653)
T ss_pred eeecccCcccCCCCcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHH
Confidence 89999998888889999999999999999999999877899999999998653 56788888999999999999899888
Q ss_pred hhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCcc
Q 005021 381 AEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNV 460 (719)
Q Consensus 381 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~ 460 (719)
.++.+.+++++|..|...+|+|....++.+||++++++|.++++.+|+++++++|+.+|+.+...+...|.+ +||+|||
T Consensus 321 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~-~~p~rfi 399 (653)
T TIGR00232 321 AEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHE-NPLGNYI 399 (653)
T ss_pred HHHHHHHhccCchhhhhhhhhhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhh-cCCCCeE
Confidence 888777777778777766666642335679999999999999999999999999998887654433334765 8999999
Q ss_pred ccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcC
Q 005021 461 RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540 (719)
Q Consensus 461 d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~ 540 (719)
|+|||||+|+++|+|||++|. ++||+++|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||+++||+
T Consensus 400 ~~GIaEq~mv~~AaGlA~~gG-~~p~~~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~ 478 (653)
T TIGR00232 400 HYGVREFAMGAIMNGIALHGG-FKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRA 478 (653)
T ss_pred eecccHHHHHHHHHHHHHcCC-CeEEEEEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhc
Confidence 999999999999999999653 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHH
Q 005021 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIA 620 (719)
Q Consensus 541 iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~a 620 (719)
||||+|++|+|++|++.++++++.+.++|+|||++|++.|.++..+...+..|+|.+.... |+||+||++|+||++|
T Consensus 479 iPn~~v~~PaD~~E~~~~~~~a~~~~~gP~~irl~r~~~~~~~~~~~~~~~~G~~vl~~~~---g~dv~iia~G~~v~~a 555 (653)
T TIGR00232 479 IPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQLEESSLEKVLKGGYVLKDSK---GPDIILIATGSEVSLA 555 (653)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHhcCCCcEEEEEcCCccCCCCcccccccCCCcEEEEecC---CCCEEEEEeChHHHHH
Confidence 9999999999999999999999965789999999999988765433245788988775432 7899999999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCCCCHHHH
Q 005021 621 AKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKI 700 (719)
Q Consensus 621 l~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~g~~~el 700 (719)
++|+++|+++||+++|||++|++|||++...|+.++++.... +|++|+++..||..++.....++|+|.|+.+|+.++|
T Consensus 556 l~Aa~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~-vvtvEe~~~~g~~~~~~~~~~~igvd~fg~sg~~~~L 634 (653)
T TIGR00232 556 VEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVT-RLAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDKL 634 (653)
T ss_pred HHHHHHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCc-eEEEecccHhHHHHhcCCcceEEEecCCcCCCCHHHH
Confidence 999999999999999999999999999887777778776544 6999999999987655433367999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHhC
Q 005021 701 YKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 701 ~~~~gl~~e~I~~~i~~~l 719 (719)
+++||||+++|+++|++++
T Consensus 635 ~~~~Glt~e~I~~~i~~~~ 653 (653)
T TIGR00232 635 FEEFGFTVENVVAKAKKLL 653 (653)
T ss_pred HHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999875
No 7
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-118 Score=974.17 Aligned_cols=584 Identities=50% Similarity=0.803 Sum_probs=519.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHh
Q 005021 83 TDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLA 162 (719)
Q Consensus 83 ~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~ 162 (719)
.++..++.-+++||.+.+++++++++||+++++|++++.+.||..+|||||.+|+|++|||||||+||+||+||++++|+
T Consensus 5 ~~~~~~~~~~n~lri~si~~~~~a~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~ 84 (632)
T KOG0523|consen 5 QDSQILKDAVNNLRILSIDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLA 84 (632)
T ss_pred hhhhhhHHHhhhhhhhhHHHHHhhhcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHh
Confidence 34556888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccc
Q 005021 163 GYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC 242 (719)
Q Consensus 163 G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~ 242 (719)
|++ ++++|.+|||.+|.++|||++ ++|+++++|||+||||+.|+|||++.|++++ .+++|||++||||
T Consensus 85 G~~--~~edl~~~Rq~~s~t~ghp~~-~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k---------~~~rv~~vlGDG~ 152 (632)
T KOG0523|consen 85 GYD--REEDLKNFRQIGSDTPGHPEP-ELPGVEVATGPLGQGISNAVGMAYAGKHLGK---------ASNRVYCVLGDGC 152 (632)
T ss_pred ccC--cHHHHHHHHhhCCCCCCCCcc-cCCCceeccCCccchHHHHHHHHHHHHhhcc---------ccceEEEEEcCch
Confidence 997 999999999999999999996 8999999999999999999999999999873 3799999999999
Q ss_pred cChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHH-HHhccCceEEEE---------------------
Q 005021 243 QMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDK-RFEGLGWHVIWV--------------------- 300 (719)
Q Consensus 243 ~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~-~~~a~G~~~~~v--------------------- 300 (719)
++||++||||++|++++|+|||+|+|+|+.+||+++.....+++++ ||++|||+++.|
T Consensus 153 ~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~k 232 (632)
T KOG0523|consen 153 LTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGK 232 (632)
T ss_pred hccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhccCC
Confidence 9999999999999999999999999999999999999888899999 999999999988
Q ss_pred ------eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhh
Q 005021 301 ------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEK 374 (719)
Q Consensus 301 ------~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~ 374 (719)
+|.+|+|....+ ...||+.|+..++++++++.+++|...|.+++++.
T Consensus 233 pt~i~~~t~~g~G~~~ig-~~~~Hg~pl~~~~~~~~k~~~~~P~~~~~v~~~~~-------------------------- 285 (632)
T KOG0523|consen 233 PTAIKATTFIGRGSPYIG-SESVHGAPLGEDDVERVKSIKGLPVLIFVVPEKVK-------------------------- 285 (632)
T ss_pred ceeeeeeeeeecCccccc-cccccCCcchhhHHHHHHhhcCCcceeEEeccccc--------------------------
Confidence 789999998877 88999999999999999998888888888876321
Q ss_pred cCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccC
Q 005021 375 KYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT 454 (719)
Q Consensus 375 ~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~ 454 (719)
.+|+...+..+.....+|..|+..+|+|+.+++..+||++++++|.++++.+|+++++++|+.+|+++ + |++++
T Consensus 286 ~~p~~~~~~~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t-----d-~~~~~ 359 (632)
T KOG0523|consen 286 LYPEKPVEDARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT-----D-FFPKR 359 (632)
T ss_pred cCCCcccccccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchh-----h-hcccc
Confidence 11221112222233456777888889999877779999999999999999999999999999999875 3 44559
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
||+|||++|||||||+++|+|+|..|. ++|||.||++|++|++||||..|+.+.+|+++++|+++++|+||||||++||
T Consensus 360 ~p~R~i~~giaEq~mv~ia~G~a~~g~-~~Pf~~tf~~F~trA~dqvr~~a~s~~~v~~v~th~~i~~GeDGPth~~ied 438 (632)
T KOG0523|consen 360 FPERFIECGIAEQNMVGIANGIACRGR-TIPFCGTFAAFFTRAFDQVRMGALSQANVIYVATHDSIGLGEDGPTHQPIED 438 (632)
T ss_pred CccceEEEeeehhhhHHhhhchhcCCC-ccchhHHHHHHHHHhhhheeehhhccCCcEEEEEeccccccCCCcccccHHH
Confidence 999999999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTG 614 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G 614 (719)
+++||+|||++|++|+|++|+..++..|+...+.|.+++++|++.+.++..+.+.+.+|+|.+.+. .+||+||+||
T Consensus 439 lA~frsiPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~~~~~igkg~~vl~~~----~~dV~LiG~G 514 (632)
T KOG0523|consen 439 LAMFRSIPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNTEIEEIGKGKYVLQEV----EPDVILIGTG 514 (632)
T ss_pred HHHHHhCCCceEEecCchHHHHHHHHHHHhcCCCeeEEEecCccccccCCCchhhhccccEEEecC----CCCEEEEecc
Confidence 999999999999999999999999999997656699999999999988766556666777765543 3699999999
Q ss_pred HhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc---------CchhhhcCCceE
Q 005021 615 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF---------GWEKIVGSKGKA 685 (719)
Q Consensus 615 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~---------G~~~~~~~~~~~ 685 (719)
++|++|++||+.|+++||+++|||++||||||..++. +..+.....+.|+|++... +|+.|.+..+..
T Consensus 515 s~v~~cl~AA~~L~~~gi~vrVvd~~~~kplD~~li~---~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~~~~~~~~ 591 (632)
T KOG0523|consen 515 SEVQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIR---SLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKYPGILVPS 591 (632)
T ss_pred HHHHHHHHHHHHHHhcCceEEEecccceeecchHHhh---hhhcccceeEEEccCCCCCcchhheeeehhcccCCcccee
Confidence 9999999999999999999999999999999977663 3333222334666776544 355565545678
Q ss_pred EeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 686 IGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 686 ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+++|+|+.+|++.+|+++|||+++.|+++++.++
T Consensus 592 ~~~~~~~~sG~p~ell~~fGit~~~Ia~~a~~~~ 625 (632)
T KOG0523|consen 592 LGVDTFGRSGPPPELLKMFGITARHIAAAALSLI 625 (632)
T ss_pred eccccCCcCCCCHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 8
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=2.4e-110 Score=915.16 Aligned_cols=568 Identities=22% Similarity=0.298 Sum_probs=476.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
.+.|++||.|||..+++.|++ +|||+|++||+|||++|||++ ||+ +.|+||||+|||+ |+||+|||
T Consensus 19 ~~eL~~La~EiR~~li~~vS~-~GGHlgsnLGvVELTiALH~V---F~s------P~D~~IwDVgHQa---YpHKiLTG- 84 (627)
T COG1154 19 IEELPQLADEIREFLLEVVSA-TGGHLGSNLGVVELTIALHYV---FDS------PKDKLIWDVGHQA---YPHKILTG- 84 (627)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCccCCCcChhhhhHHHHHH---hCC------CCCCeEEecCccc---chhHHhcC-
Confidence 345999999999999999998 999999999999999999999 897 8999999999999 99999999
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (719)
|.++|.++||.+|++ |||++.||++|.|.+||.+++||.|+|||.|+.++| .+.+|+|+||||+++
T Consensus 85 ---R~e~f~tlRq~~Gls-Gf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g----------~~~~vvaVIGDGAlt 150 (627)
T COG1154 85 ---RREQFDTLRQKDGLS-GFPKREESEHDWFGVGHSSTSISAALGMAKARDLKG----------EDRNVVAVIGDGALT 150 (627)
T ss_pred ---chhhcchhhhcCCCC-CCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcC----------CCCcEEEEECCcccc
Confidence 579999999999999 999999999999999999999999999999999987 378899999999999
Q ss_pred hhHHHHHHHHhh-hcCCCcEEEEEeCCCCCcccchhhhc-------chhHHHHHhccCceEEEEeeeecCCCcccccc--
Q 005021 245 EGIANEASSLAG-HLGLGKLIAFYDDNHISIDGDTEIAF-------TENVDKRFEGLGWHVIWVTTTIGFGSPNKANS-- 314 (719)
Q Consensus 245 eG~~~EAln~A~-~~~L~nli~ivddN~~sis~~~~~~~-------~~~~~~~~~a~G~~~~~v~t~~g~g~~~~~~~-- 314 (719)
.|++|||||+|+ ..+ .|+|+|+|||+|||+.|++... ..+.+++++..+.+++. . .|.+.....
T Consensus 151 ~GmA~EALN~ag~~~~-~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~--~---~~~~~~~~~~r 224 (627)
T COG1154 151 GGMAFEALNNAGADLK-SNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLS--K---VGPPLKRFAKR 224 (627)
T ss_pred chHHHHHHhhhhhccC-CCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHH--h---hchHHHHHHHH
Confidence 999999999999 333 7899999999999999997421 23445555544433332 0 122211100
Q ss_pred --ccccCCCCCHHHHHHHHHHcCC----CCCCCCCcHHHHHHHHHHh-hcchhHHHHHHHHHhhhh--hcCchhhhhhhh
Q 005021 315 --YSVHGSALGAKEVDATRKNLGW----PYEPFHVPEDVKKHWSRHV-AEGATLEAEWNAKFAEYE--KKYPEEAAEFKS 385 (719)
Q Consensus 315 --~~~h~~~l~~~~~~~~~~~l~~----~~~~~~~~~~v~~~~~~~~-~~g~~~~~~~~~~~~~~~--~~~p~~~~~~~~ 385 (719)
..+.+. +.+ ..+++++|+ |.|++++.+ ++..++..+ .+|+.+.|..++|+++|+ +++|+.+|....
T Consensus 225 ~e~~~K~l-~~~---~~lFeelGf~YiGPiDGHni~~-Li~~Lk~~kd~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~ 299 (627)
T COG1154 225 AEESIKGL-LVP---GTLFEELGFNYIGPIDGHNLEE-LIPTLKNAKDLKGPVLLHVVTKKGKGYKPAEEDPIKYHGVGP 299 (627)
T ss_pred HHHhhhcc-cCc---hhhHHHhCCeeECCcCCCCHHH-HHHHHHHHhcCCCCEEEEEEecCCCCCChhhcChhhccCCCC
Confidence 000111 011 148899998 899999865 778887644 567888888889999885 677777776532
Q ss_pred hh---cCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCcccc
Q 005021 386 IS---SGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRF 462 (719)
Q Consensus 386 ~~---~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~ 462 (719)
.. +|..+ +- .....++.++|+++|.+++++|+++|++||+|..++ ||..|++ +||+||||+
T Consensus 300 f~~~~tg~~~--------~~--~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gt-----GL~~F~~-~fP~R~fDV 363 (627)
T COG1154 300 FDPIETGQSK--------KS--KPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGT-----GLVKFSK-KFPDRFFDV 363 (627)
T ss_pred CCccccCccC--------CC--CCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCC-----ChHHHHH-hCchhheeh
Confidence 11 11111 00 012345779999999999999999999999997543 4678987 899999999
Q ss_pred ccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHH-HHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhhhhHHcC
Q 005021 463 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAA-IRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEHLASFRA 540 (719)
Q Consensus 463 GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dq-ir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~edia~lr~ 540 (719)
||||||+|++|+|||+.| ++|||++|++|+||+||| |||+|+||+||+|++ |++| +|.||+|||+++|+++||+
T Consensus 364 GIAEQHAVT~AAGlA~~G--~kPvvaIYSTFLQRAYDQliHDvaiqnLPV~faI--DRAGivG~DG~TH~G~fDls~l~~ 439 (627)
T COG1154 364 GIAEQHAVTFAAGLAAEG--MKPVVAIYSTFLQRAYDQLIHDVAIQNLPVTFAI--DRAGIVGADGPTHQGLFDLSFLRC 439 (627)
T ss_pred hhhHHHHHHHHHHHHhCC--CCCEEEEecHHHHHHHHHHHHHHHhccCCeEEEE--ecCcccCCCCCccccHHHHHHHhc
Confidence 999999999999999999 799999999999999999 689999999999999 8888 7999999999999999999
Q ss_pred CCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCC-CccccccccEEEecCCCCCCCCEEEEEeCHhHHH
Q 005021 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT-SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEI 619 (719)
Q Consensus 541 iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~-~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~ 619 (719)
||||+|++|+|++|++.||++|+...++|++|||||++.+..... ..+.+++|+|+++++ |.||+||++|.++..
T Consensus 440 iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~~~~~~~Gk~~i~~~----G~~vail~~G~~~~~ 515 (627)
T COG1154 440 IPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPELEPLEIGKGELLKE----GEKVAILAFGTMLPE 515 (627)
T ss_pred CCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccccccccccceEEEec----CCcEEEEecchhhHH
Confidence 999999999999999999999998666999999999976554322 246789999999997 799999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhhh---------cCCceEEee-
Q 005021 620 AAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV---------GSKGKAIGI- 688 (719)
Q Consensus 620 al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~~---------~~~~~~ig~- 688 (719)
|++||+.|.+.||+++|||+|++||||++.+. .+.+++ ..+||+||+... |+|+.+ ..++.++|+
T Consensus 516 al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~---~La~~h-~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglp 591 (627)
T COG1154 516 ALKVAEKLNAYGISVTVVDPRFVKPLDEALLL---ELAKSH-DLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLP 591 (627)
T ss_pred HHHHHHHHHhcCCCcEEEcCeecCCCCHHHHH---HHHhhc-CeEEEEecCcccccHHHHHHHHHHhcCCCCceEEecCC
Confidence 99999999999999999999999999998764 445555 457999999964 566532 146778999
Q ss_pred CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 689 DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 689 d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|.|++||+++++++.+|||++.|+++|.+++
T Consensus 592 d~fi~hg~~~el~~~~gLd~~~i~~~i~~~l 622 (627)
T COG1154 592 DEFIDHGSPEELLAELGLDAEGIARRILEWL 622 (627)
T ss_pred hHhhccCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999998764
No 9
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=6.3e-106 Score=936.00 Aligned_cols=595 Identities=60% Similarity=0.955 Sum_probs=517.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
|-+.+.|+++|++||+++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|+++++
T Consensus 2 ~~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~ 81 (624)
T PRK05899 2 MMDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHL 81 (624)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHH
Confidence 34455699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC-CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcc
Q 005021 162 AGY-DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240 (719)
Q Consensus 162 ~G~-~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGD 240 (719)
+|+ + +.++|.+||++++.++|||++.++|++++++|++|+|++.|+|+|+|.++++.+|+++..+..+++|||++||
T Consensus 82 ~G~~~--~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GD 159 (624)
T PRK05899 82 AGYDL--SIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGD 159 (624)
T ss_pred cCCCC--CHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECc
Confidence 998 6 8999999999999988999987899999999999999999999999999998878777666678999999999
Q ss_pred cccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE--------------------
Q 005021 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-------------------- 300 (719)
Q Consensus 241 G~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v-------------------- 300 (719)
|++++|++|||++.|+.++|+|+++|+|||++++++++......++.+++++|||++++|
T Consensus 160 G~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~~~ 239 (624)
T PRK05899 160 GDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTK 239 (624)
T ss_pred chhhchHHHHHHHHHHHhCCCCEEEEEECCCCcccccccccccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999887555678999999999999998
Q ss_pred ------eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhh
Q 005021 301 ------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEK 374 (719)
Q Consensus 301 ------~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~ 374 (719)
+|.||+|.+..++...||+.++++++++..++++++..+++.++.++..+|+....++.....
T Consensus 240 P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 308 (624)
T PRK05899 240 PTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEA----------- 308 (624)
T ss_pred CEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHH-----------
Confidence 789999998888777899998888899988888876556777776666666432222211110
Q ss_pred cCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccC
Q 005021 375 KYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT 454 (719)
Q Consensus 375 ~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~ 454 (719)
.|..... ....++|++++++|.+++++||+++++++|+.++++....+...|.+++
T Consensus 309 -------------------~~~~~~~-----~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~~~~f~~~~ 364 (624)
T PRK05899 309 -------------------EWNEKFA-----GEKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPED 364 (624)
T ss_pred -------------------HHHHhhc-----ccchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCcccccccccCccC
Confidence 1111110 1346889999999999999999999999999776654322223453347
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
||+||||+|||||+|+++|+|||+.|. ++||+++|++|++|+++|||..|++++||+++++++|+++|+||+|||++||
T Consensus 365 ~p~R~~d~GIaE~~~vg~A~GlA~~G~-~~pv~~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~ed 443 (624)
T PRK05899 365 YSGRYIHYGVREFAMAAIANGLALHGG-FIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQ 443 (624)
T ss_pred CCCCeeeeChhHHHHHHHHHHHHHcCC-CeEEEEEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHH
Confidence 999999999999999999999999993 5999999999999999999999999999999999999989999999999999
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCC-CccccccccEEEecCCCCCCCCEEEEEe
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT-SIDGVEKGAYIISDNSSGNKPDVILIGT 613 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~-~~~~~~~G~~~i~~~~~~~g~dvtIva~ 613 (719)
+++||+||||+|++|+|++|++.+++++++..++|+|||++|+..+.++.+ ....++.|++++ ++ |+|+|||++
T Consensus 444 ia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~l-~~----G~dvtiia~ 518 (624)
T PRK05899 444 LASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVLERTAQEEGVAKGGYVL-RD----DPDVILIAT 518 (624)
T ss_pred HHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCcCCccccccccCCcEEE-ec----CCCEEEEEe
Confidence 999999999999999999999999999997448999999999988766543 235688898665 44 689999999
Q ss_pred CHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCC
Q 005021 614 GSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGA 693 (719)
Q Consensus 614 G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~ 693 (719)
|+||++|++|+++|+++||+++|||++|++|||++...+....+.+....+|++|++...||..++..+..++|++.|+.
T Consensus 519 G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~~~~~~~~~~~iGv~~f~~ 598 (624)
T PRK05899 519 GSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDTFGA 598 (624)
T ss_pred CHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccchhhhcCCCceEEECCCCCC
Confidence 99999999999999999999999999999999998655555566444434688898888889888776778999955999
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 694 SAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 694 ~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+|++++|+++||||+++|+++|++++
T Consensus 599 ~g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 599 SAPADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 99999999999999999999999875
No 10
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=6e-104 Score=900.56 Aligned_cols=560 Identities=18% Similarity=0.178 Sum_probs=452.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhC
Q 005021 85 AALVEKSVNTIRFLAVDAV-EKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 163 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v-~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G 163 (719)
.+.|++||+|||.++++.+ ++ ++||+|+|||+|||++|||++ ||+ |+|++|||+|||+ |+||+|||
T Consensus 93 ~~eL~~La~EiR~~li~~v~s~-~GGHl~snLGvVELTvALH~V---Fd~------p~DkiiwDvgHQ~---Y~HKiLTG 159 (701)
T PLN02225 93 VKELKLLADEIRTELHSVLWKK-TQKSMNPSFAAIELTLALHYV---FRA------PVDNILWDAVEQT---YAHKVLTR 159 (701)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-cCCCcCCCccHHHHHHHHHHH---hCC------CCCceeecccccc---chhhHhcC
Confidence 3559999999999999999 66 899999999999999999999 997 9999999999999 99999999
Q ss_pred CCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc
Q 005021 164 YDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 243 (719)
Q Consensus 164 ~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~ 243 (719)
|++.|.+ ||.+|++ |||++.|+++|.|.+||.+++||.|+|||.|+++++ .+++||++||||+|
T Consensus 160 ----R~~~f~~-Rq~~Gls-Gf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g----------~~~~vvaVIGDGal 223 (701)
T PLN02225 160 ----RWSAIPS-RQKNGIS-GVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKG----------KRDRVVAVIDNATI 223 (701)
T ss_pred ----ChhhcCc-cccCCcC-CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcC----------CCCcEEEEEcCcch
Confidence 5788987 9999999 999999999999999999999999999999999987 37889999999999
Q ss_pred ChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc--------hhhh-------cchhHHHHHhccCceEEEEeeeecCCC
Q 005021 244 MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD--------TEIA-------FTENVDKRFEGLGWHVIWVTTTIGFGS 308 (719)
Q Consensus 244 ~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~--------~~~~-------~~~~~~~~~~a~G~~~~~v~t~~g~g~ 308 (719)
+.|++|||||+|+..+ .|||||+|||+|||+.+ ++.. ...+.+.+++......++ ..+.+.
T Consensus 224 tgGma~EaLN~~g~~~-~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~---~~~~~~ 299 (701)
T PLN02225 224 TAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTK---RIGKGM 299 (701)
T ss_pred hhhhHHHHHhhhhccC-CCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHH---hCCHHH
Confidence 9999999999999987 68999999999999999 6531 122344444433222221 001000
Q ss_pred ccc-c-ccccccCCCCCHHHHHHHHHHcCC----CCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhhh
Q 005021 309 PNK-A-NSYSVHGSALGAKEVDATRKNLGW----PYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAE 382 (719)
Q Consensus 309 ~~~-~-~~~~~h~~~l~~~~~~~~~~~l~~----~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~ 382 (719)
... . ......+. +.+. -..++++||+ |.|+++++. ++..|+..+ .+..+.|...|.
T Consensus 300 ~~~~~~~~~~~k~~-~~~~-~~~lFe~lG~~Y~GpvDGHdi~~-Li~~l~~~k---------------~~~~~~PvlvHv 361 (701)
T PLN02225 300 YEWAAKVDEYARGM-VGPT-GSTLFEELGLYYIGPVDGHNIED-LVCVLREVS---------------SLDSMGPVLVHV 361 (701)
T ss_pred HHHHHHHHHHhhhc-cCCC-ccCcHHHcCCeEECccCCCCHHH-HHHHHHHHH---------------cCCCCCCEEEEE
Confidence 000 0 00000000 0000 0147888987 889998865 666665432 122234666666
Q ss_pred hhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCcccc
Q 005021 383 FKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRF 462 (719)
Q Consensus 383 ~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~ 462 (719)
.+. +|+.++.- +........+++++|+++|.+++++||+|+++++||..++ ++..|++ +||+||||+
T Consensus 362 ~T~--KGkd~~tg-----~~~~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gt-----gl~~f~~-~fPdRffDv 428 (701)
T PLN02225 362 ITE--ENRDAETG-----KNIMVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDA-----SLITFQE-RFPDRFFNV 428 (701)
T ss_pred Eec--CCCCCCCC-----CcCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcc-----cHHHHHH-Hcccccccc
Confidence 553 33322210 0111112467999999999999999999999999997543 2466876 899999999
Q ss_pred ccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCC
Q 005021 463 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM 541 (719)
Q Consensus 463 GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~i 541 (719)
||||||||++|+|||+.| ++|||++|++|++|+||||+. +|++++||+|++.+.|+ +|+||+|||++||+++||+|
T Consensus 429 GIAEQhaVt~AAGLA~~G--~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~aGl-vg~DG~TH~g~~Dia~lr~I 505 (701)
T PLN02225 429 GMAEQHAVTFSAGLSSGG--LKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGL-VGSDGPVQCGAFDIAFMSSL 505 (701)
T ss_pred CccHHHHHHHHHHHHHCC--CEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECCcc-CCCCCccccccHHHHHHhcC
Confidence 999999999999999999 699999999999999999876 69999999999966554 57899999999999999999
Q ss_pred CCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC--CCCccccccccEEEecCCCCCCCCEEEEEeCHhHHH
Q 005021 542 PNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEI 619 (719)
Q Consensus 542 Pnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~--~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~ 619 (719)
|||+|++|+|+.|++.||++|+...++|+|||+||+..+..+ .+..+.+++|+++++++ |.|++||++|.|+++
T Consensus 506 Pnm~V~aPsD~~El~~mL~~A~~~~~gPv~IR~pRg~~~~~~~~~~~~~~~~iGK~~vlre----G~dvtIia~G~mv~~ 581 (701)
T PLN02225 506 PNMIAMAPADEDELVNMVATAAYVTDRPVCFRFPRGSIVNMNYLVPTGLPIEIGRGRVLVE----GQDVALLGYGAMVQN 581 (701)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHhcCCCCEEEEecccccCCCCcCCCCCccccCcceEEEEe----CCCEEEEeccHHHHH
Confidence 999999999999999999998854579999999998765432 11125688999988887 799999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhh------------cCCceEEe
Q 005021 620 AAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIV------------GSKGKAIG 687 (719)
Q Consensus 620 al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~------------~~~~~~ig 687 (719)
|++||++|+++||+++|||++|++|||++++. +.+.+++ .+||+||+...|+|+.+ ..++.++|
T Consensus 582 Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~--~~~~k~~--~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iG 657 (701)
T PLN02225 582 CLHAHSLLSKLGLNVTVADARFCKPLDIKLVR--DLCQNHK--FLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIV 657 (701)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCHHHHH--HHHhhcC--eEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEe
Confidence 99999999999999999999999999999875 3444443 47999999987776532 12467899
Q ss_pred e-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 688 I-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 688 ~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+ |+|+++|++++|++++|||+++|+++|++++
T Consensus 658 ipd~F~~~G~~~~ll~~~GLdae~I~~~i~~~l 690 (701)
T PLN02225 658 LPDGYIEEASPREQLALAGLTGHHIAATALSLL 690 (701)
T ss_pred cCCcCcCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 9 8999999999999999999999999998764
No 11
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.1e-100 Score=879.36 Aligned_cols=570 Identities=19% Similarity=0.231 Sum_probs=456.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhC
Q 005021 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 163 (719)
Q Consensus 84 ~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G 163 (719)
+.+.|+++|++||+.+++|+.+ .+||+|++||++||+++||++ ||. ++||||||+|||+ |+|++++|
T Consensus 47 ~~~~l~~la~~iR~~ii~~~~~-~~GH~g~~Ls~vel~~aL~~~---~~~------p~Dr~i~s~GH~a---y~~~~l~g 113 (677)
T PLN02582 47 SVKELKQLADELRSDVIFNVSK-TGGHLGSSLGVVELTVALHYV---FNA------PQDKILWDVGHQS---YPHKILTG 113 (677)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-cCCCcCccccHHHHHHHHHHh---hCC------CCCeEEEECcchH---HHHHHHHc
Confidence 4455999999999999999997 589999999999999999975 553 5799999999999 99999999
Q ss_pred CCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc
Q 005021 164 YDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 243 (719)
Q Consensus 164 ~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~ 243 (719)
+ .++|++|||.+| +.|||++.++||+++++||+|+||+.|+|+|+|.++++ .+++|||++|||++
T Consensus 114 r----~~~l~~~r~~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~----------~~~~v~~viGDG~~ 178 (677)
T PLN02582 114 R----RDKMHTMRQTNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKG----------KKNNVVAVIGDGAM 178 (677)
T ss_pred c----HHHhcccccCCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcC----------CCCEEEEEeccccc
Confidence 4 688999999999 55999999999999999999999999999999999876 37899999999999
Q ss_pred ChhHHHHHHHHhhhcCCCcEEEEEeCCCC-Cc--------ccchhhh-------cchhHHHHHhccCceEEEEeeeecCC
Q 005021 244 MEGIANEASSLAGHLGLGKLIAFYDDNHI-SI--------DGDTEIA-------FTENVDKRFEGLGWHVIWVTTTIGFG 307 (719)
Q Consensus 244 ~eG~~~EAln~A~~~~L~nli~ivddN~~-si--------s~~~~~~-------~~~~~~~~~~a~G~~~~~v~t~~g~g 307 (719)
++|++|||+|+|+++++ ||++|+|||+| || +.+++.. .....+.+++.-....+. ++ . +
T Consensus 179 ~~G~~~Ealn~a~~~~~-~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~--~-~ 253 (677)
T PLN02582 179 TAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTK-QI--G-G 253 (677)
T ss_pred chhhHHHHHHHHHhhCc-CEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHH-hC--c-H
Confidence 99999999999999996 79999999999 44 5555432 111223333322221111 00 0 0
Q ss_pred CccccccccccCCCCCHHHHH--------HHHHHcCC----CCCCCCCcHHHHHHHHHHhh---cchhHHHHHHHHHhhh
Q 005021 308 SPNKANSYSVHGSALGAKEVD--------ATRKNLGW----PYEPFHVPEDVKKHWSRHVA---EGATLEAEWNAKFAEY 372 (719)
Q Consensus 308 ~~~~~~~~~~h~~~l~~~~~~--------~~~~~l~~----~~~~~~~~~~v~~~~~~~~~---~g~~~~~~~~~~~~~~ 372 (719)
. .+ ...+. + .+.++ .++++||| |.|++++.+ +++.|+..+. +++.+.+..+.|+++|
T Consensus 254 ~--~~--~~~~~--~-~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~-L~~al~~~k~~~~~~P~vihv~T~KGkG~ 325 (677)
T PLN02582 254 P--MH--ELAAK--V-DEYARGMISGSGSTLFEELGLYYIGPVDGHNIDD-LVTILREVKSTKTTGPVLIHVVTEKGRGY 325 (677)
T ss_pred h--HH--HHHHH--H-HHHhhhccCccccchHHHcCCeEEeeeCCCCHHH-HHHHHHHHHhcCCCCCEEEEEEecCCCCC
Confidence 0 00 00000 0 00011 36788888 788998865 7788876543 3677777788888887
Q ss_pred h--hcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccC
Q 005021 373 E--KKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDF 450 (719)
Q Consensus 373 ~--~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f 450 (719)
. +++|+.+|... |.+.....+. .......++.++|+++|.+++++||+|+++++|+++++. +..|
T Consensus 326 ~~ae~~~~~~H~~~-------~f~~~~g~~~-~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~g-----l~~f 392 (677)
T PLN02582 326 PYAERAADKYHGVV-------KFDPATGKQF-KVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLF 392 (677)
T ss_pred ChhhcChhhcCCCC-------CCCcccCCcc-CCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccc-----hHHH
Confidence 5 56666666432 1111000000 000112467889999999999999999999999876543 3568
Q ss_pred cccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHH-HHhhhcCCEEEEEecCCCccCCCCCCC
Q 005021 451 QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIR-ISALCEAGVIYVMTHDSIGLGEDGPTH 529 (719)
Q Consensus 451 ~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir-~~a~~~~pV~~v~~~~g~g~g~dG~TH 529 (719)
++ +||+||||+|||||+||++|+|||+.| ++||+++|++|++|+||||+ ++|++++||+|+++++|+ +|+||+||
T Consensus 393 ~~-~fP~R~fdvGIAEq~~vg~AaGLA~~G--~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~-vg~dG~TH 468 (677)
T PLN02582 393 AR-RFPTRCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTH 468 (677)
T ss_pred HH-HcCccccccCcCHHHHHHHHHHHHHCC--CeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCc-ccCCCCcc
Confidence 76 899999999999999999999999999 69999999999999999975 569999999999977766 67899999
Q ss_pred CChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC--CC-CccccccccEEEecCCCCCCC
Q 005021 530 QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GT-SIDGVEKGAYIISDNSSGNKP 606 (719)
Q Consensus 530 q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~--~~-~~~~~~~G~~~i~~~~~~~g~ 606 (719)
|+++|+++||+|||++|++|+|+.|++.+|++|+...++|+|||++|+..+... .. ..+.+++|++.++++ |.
T Consensus 469 ~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~----G~ 544 (677)
T PLN02582 469 CGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLE----GE 544 (677)
T ss_pred cccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEe----CC
Confidence 999999999999999999999999999999999964469999999998754322 11 123578899888887 78
Q ss_pred CEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhh----c--
Q 005021 607 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIV----G-- 680 (719)
Q Consensus 607 dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~----~-- 680 (719)
|++||++|+||++|++||+.|+++||+++|||++|++|||++.+. ++.+++. .+||+|++...||++.+ .
T Consensus 545 dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~---~~~k~~~-~vVtvEe~~~GG~Gs~va~~l~~~ 620 (677)
T PLN02582 545 RVALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIR---SLAKSHE-VLITVEEGSIGGFGSHVAQFMALD 620 (677)
T ss_pred CEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHH---HHhhhCC-EEEEECCCCCCcHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998763 5666664 46999999998887632 1
Q ss_pred ------CCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 681 ------SKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 681 ------~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.++.++|+ |+|+++|++++|+++||||+++|+++|++++
T Consensus 621 ~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~~e~I~~~i~~~l 666 (677)
T PLN02582 621 GLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTPSHIAATVLNVL 666 (677)
T ss_pred CCccCCceeEEecCCCcccCcCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 24568899 8999999999999999999999999998764
No 12
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=2.8e-99 Score=873.58 Aligned_cols=545 Identities=20% Similarity=0.289 Sum_probs=441.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
++.. .|+++|++||+++++++++ ++||+|++||+|||+++||++ ||+ +|||||||+|||+ |+||++
T Consensus 13 l~~~-~l~~la~~iR~~~i~~~~~-~~GH~g~~ls~vel~~aL~~~---~~~------~rDr~i~s~GH~~---Y~~~~~ 78 (617)
T TIGR00204 13 LSID-ELEKLCDELRRYLLESVSA-SGGHLASGLGTVELTVALHYV---FNT------PKDQFIWDVGHQA---YPHKLL 78 (617)
T ss_pred CCHH-HHHHHHHHHHHHHHHHHhc-cCCCcCcchhHHHHHHHHHhh---CCC------CCCcEEEecchHH---HHHHHH
Confidence 5444 4999999999999999985 999999999999999999986 676 8999999999999 999999
Q ss_pred hCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc
Q 005021 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (719)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (719)
+|+ .++|.+||+.+| ++|||++.+++++.+++||+|+|++.|+|+|+|.|+++ .+.+|||++|||
T Consensus 79 ~G~----~~~l~~~r~~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~----------~~~~v~~~~GDG 143 (617)
T TIGR00204 79 TGR----REKFSTLRQKKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKG----------ADRKTVCVIGDG 143 (617)
T ss_pred hCc----HHHhcchhhcCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhC----------CCCEEEEEECCc
Confidence 995 689999999999 55999988766666899999999999999999999886 378999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc-------chh----------------------HHHH---
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-------TEN----------------------VDKR--- 289 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~-------~~~----------------------~~~~--- 289 (719)
+++||++|||+|+|++++|+ +|+|+|||+|+|+++++... ..+ +.++
T Consensus 144 ~~~eG~~~Ea~~~a~~~~l~-~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (617)
T TIGR00204 144 AITAGMAFEALNHAGDLKTD-MIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEE 222 (617)
T ss_pred ccccccHHHHHHHHHhcCCC-EEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 99999999999999999996 59999999999999986321 000 2222
Q ss_pred -----------HhccCceEEEEeeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHh-hc
Q 005021 290 -----------FEGLGWHVIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHV-AE 357 (719)
Q Consensus 290 -----------~~a~G~~~~~v~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~-~~ 357 (719)
|++|||+++. +.|++++++ +++.|+..+ .+
T Consensus 223 ~~k~~~~~~~~f~~~G~~~~~-------------------------------------~vDGhd~~~-l~~al~~ak~~~ 264 (617)
T TIGR00204 223 SMKGLVVPGTFFEELGFNYIG-------------------------------------PVDGHDLLE-LIETLKNAKKLK 264 (617)
T ss_pred hhhhccCccchHHHcCCcEEc-------------------------------------ccCCCCHHH-HHHHHHHHhcCC
Confidence 4455554441 234444332 333443221 12
Q ss_pred chhHHHHHHHHHhhhh--hcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecC
Q 005021 358 GATLEAEWNAKFAEYE--KKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSAD 435 (719)
Q Consensus 358 g~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saD 435 (719)
++.+.+..+.|+++|. +.+|..+|... |.+.....++- ......+++++|+++|.+++++||+|+++++|
T Consensus 265 ~P~~i~~~T~KGkG~~~~e~~~~~~H~~~-------~~~~~~~~~~~-~~~~~~~~~~a~~~~L~~~~~~d~~iv~i~ad 336 (617)
T TIGR00204 265 GPVFLHIQTKKGKGYKPAEKDPIGWHGVG-------PFDLSTGCLPK-SKSALPSYSKIFSDTLCELAKKDNKIVGITPA 336 (617)
T ss_pred CCEEEEEEecCCCCCchhhcChhhccCCC-------CCChhhCCcCC-CCCCCccHHHHHHHHHHHHHhhCcCEEEEECC
Confidence 3333334444455553 34455555331 11111000000 01123578999999999999999999999999
Q ss_pred CCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEE
Q 005021 436 LASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYV 514 (719)
Q Consensus 436 l~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v 514 (719)
+.+++. +..|++ +||+||||+|||||+||++|+|||+.| ++||+++|++|++|+||||++ .|++++||+|+
T Consensus 337 ~~~~~~-----~~~f~~-~fP~R~~d~GIaEq~~vg~AaGlA~~G--~~Pvv~~~a~Fl~ra~dQi~~~~a~~~lpV~i~ 408 (617)
T TIGR00204 337 MPEGSG-----LDKFSR-KFPDRYFDVAIAEQHAVTFAAGMAIEG--YKPFVAIYSTFLQRAYDQVVHDVCIQKLPVLFA 408 (617)
T ss_pred ccCCcC-----hHHHHH-HCccccccCCccHHHHHHHHHHHHHCC--CEEEEEecHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 864432 456876 899999999999999999999999999 699999999999999999876 59999999999
Q ss_pred EecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCC-CCccccccc
Q 005021 515 MTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG-TSIDGVEKG 593 (719)
Q Consensus 515 ~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~-~~~~~~~~G 593 (719)
++++|+. |+||+|||+++|+++||+||||+|++|+|+.|++.+|++|++..++|+|||++|+..+.++. +..+.+++|
T Consensus 409 ~~~~G~~-g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~~~~~~~~~~G 487 (617)
T TIGR00204 409 IDRAGIV-GADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRYPRGNAVGVELTPEPEKLPIG 487 (617)
T ss_pred EECCCcC-CCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEccCCcCCcccCCccccccCC
Confidence 9888874 89999999999999999999999999999999999999999744599999999987654331 223568899
Q ss_pred cEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc
Q 005021 594 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF 673 (719)
Q Consensus 594 ~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~ 673 (719)
+++++++ |.|+|||++|.|+++|++||++|+++||+++|||++|++|||++++. +++.+++ .+||+||+...
T Consensus 488 k~~vlr~----G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~--~~~~k~~--~vvtvEE~~~~ 559 (617)
T TIGR00204 488 KSEVLRK----GEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELIL--EIAASHE--KLVTVEENAIM 559 (617)
T ss_pred ceEEEEc----CCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHH--HHHhhcC--eEEEEECCCCc
Confidence 9999987 79999999999999999999999999999999999999999999875 4554554 36999999875
Q ss_pred -Cchhh----h-----cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 674 -GWEKI----V-----GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 674 -G~~~~----~-----~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+++. + ..++.++|+ |.|+++|++++|+++||||+++|+++|++++
T Consensus 560 GGlGs~v~~~l~~~~~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 560 GGAGSAVLEFLMDQNKLVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred cChHHHHHHHHHhcCCCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 56542 2 236788999 7999999999999999999999999999874
No 13
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=7.7e-96 Score=847.30 Aligned_cols=544 Identities=23% Similarity=0.305 Sum_probs=435.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
++. +.|+++|++||.++++++.++ +||+|++||++||+++||++ ||. +|||||||+|||+ |+|++|
T Consensus 21 l~~-~~l~~~a~~iR~~ii~~~~~~-~GH~g~~ls~vel~~aL~~~---~~~------prDr~i~s~GH~~---Y~~~~l 86 (641)
T PRK12571 21 LSD-AELEQLADELRAEVISAVSET-GGHLGSSLGVVELTVALHAV---FNT------PKDKLVWDVGHQC---YPHKIL 86 (641)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHh-CCCcCCCchHHHHHHHHHHh---cCC------CCCcEEEECchHH---HHHHHH
Confidence 443 449999999999999999985 79999999999999999955 553 5999999999999 999999
Q ss_pred hCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc
Q 005021 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (719)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (719)
+| +.++|++|||.+|++ |||++.++|++.+..||.|++++.|+|+|+|.++.+ .+++|||++|||
T Consensus 87 ~g----~~~~l~~~r~~~~l~-g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~----------~~~~v~~v~GDG 151 (641)
T PRK12571 87 TG----RRDRFRTLRQKGGLS-GFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQ----------PDGDVVAVIGDG 151 (641)
T ss_pred hC----CHHHHhhhhhCCCcC-CCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhC----------CCCeEEEEEeCc
Confidence 99 478999999999955 999998999999999999999999999999999875 378999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc--------chhH---------------------------
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF--------TENV--------------------------- 286 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~--------~~~~--------------------------- 286 (719)
+++||++|||+++|+++++ ||++|+|||+|+|+++++... .+..
T Consensus 152 ~~~eG~~~Eal~~a~~~~~-~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (641)
T PRK12571 152 SLTAGMAYEALNNAGAADR-RLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARE 230 (641)
T ss_pred hhhcchHHHHHHHHHHhCC-CEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 9999999999999999997 899999999999999996211 1111
Q ss_pred --------HHHHhccCceEEEEeeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhh--
Q 005021 287 --------DKRFEGLGWHVIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVA-- 356 (719)
Q Consensus 287 --------~~~~~a~G~~~~~v~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~-- 356 (719)
.++|++|||+++. +.|++++.+ +++.|+..+.
T Consensus 231 ~~~~~~~~~~~f~a~G~~~~~-------------------------------------~vdGhd~~~-l~~al~~ak~~~ 272 (641)
T PRK12571 231 LVTGMIGGGTLFEELGFTYVG-------------------------------------PIDGHDMEA-LLSVLRAARARA 272 (641)
T ss_pred hhhhccchhhHHHHcCCEEEC-------------------------------------ccCCCCHHH-HHHHHHHHHhCC
Confidence 2566666666551 123333221 2333322211
Q ss_pred cchhHHHHHHHHHhhh--hhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEec
Q 005021 357 EGATLEAEWNAKFAEY--EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSA 434 (719)
Q Consensus 357 ~g~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~sa 434 (719)
+++.+.+..+.++++| .+.++..+|... |.+......+. ......+++++|+++|.+++++||+++++++
T Consensus 273 ~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~-------~f~~~~~~~~~-~~~~~~~~~~~f~~~L~~la~~d~~iv~isa 344 (641)
T PRK12571 273 DGPVLVHVVTEKGRGYAPAEADEDKYHAVG-------KFDVVTGLQKK-SAPSAPSYTSVFGEELTKEAAEDSDIVAITA 344 (641)
T ss_pred CCCEEEEEEecCccCcchhhcCCCcccCCC-------CcCCCCCcccC-CCccchhHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 1222222233333343 344444555321 11111100000 0011347899999999999999999999999
Q ss_pred CCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEE
Q 005021 435 DLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIY 513 (719)
Q Consensus 435 Dl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~ 513 (719)
|+.+++ ++..|++ +||+||||+|||||+|+++|+|||+.| ++||+++|++|++|++|||++ +|++++||+|
T Consensus 345 dl~~~~-----~~~~f~~-~~p~R~id~GIaE~~mvg~AaGlA~~G--~~P~v~~f~~Fl~ra~dQI~~~~a~~~lpv~~ 416 (641)
T PRK12571 345 AMPLGT-----GLDKLQK-RFPNRVFDVGIAEQHAVTFAAGLAAAG--LKPFCAVYSTFLQRGYDQLLHDVALQNLPVRF 416 (641)
T ss_pred CccCCC-----ChHHHHH-hCCCcccccCccHHHHHHHHHHHHHCC--CEEEEEehHHHHHHHHHHHHHHHhhcCCCeEE
Confidence 996653 2456866 899999999999999999999999998 799999999999999999976 6999999999
Q ss_pred EEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC-CCCcccccc
Q 005021 514 VMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA-GTSIDGVEK 592 (719)
Q Consensus 514 v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~-~~~~~~~~~ 592 (719)
+++++|+ .|+||+|||++||+++||+|||++|++|+|+.|++.++++|++..++|+|||++|+..+... +...+.+++
T Consensus 417 v~~~~G~-~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~ 495 (641)
T PRK12571 417 VLDRAGL-VGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEGVGVEIPAEGTILGI 495 (641)
T ss_pred EEECCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCcEEEEEecCcCCccccCCCCccccC
Confidence 9977776 59999999999999999999999999999999999999999964489999999998765322 112245788
Q ss_pred ccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccc-c
Q 005021 593 GAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG-S 671 (719)
Q Consensus 593 G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~-~ 671 (719)
|++.++++ |+|++||+||+|++.|++||++|+++||+++|||+++++|||++.+ .++.+++ .. +++||+ .
T Consensus 496 gk~~vlr~----G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i---~sv~k~~-~v-vvveE~~~ 566 (641)
T PRK12571 496 GKGRVPRE----GPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALT---DLLVRHH-IV-VIVEEQGA 566 (641)
T ss_pred ceeEEEec----CCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHH---HHHhhhC-CE-EEEECCCC
Confidence 99888887 7999999999999999999999999999999999999999999765 4677776 33 555555 4
Q ss_pred ccCchhhh------------cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 672 TFGWEKIV------------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 672 ~~G~~~~~------------~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
..||++.+ ..++.++|+ |.|+++|+.++++++||||+++|+++|++++
T Consensus 567 ~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~l 627 (641)
T PRK12571 567 MGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGAL 627 (641)
T ss_pred CCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 56787632 235678999 8999999999999999999999999998764
No 14
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=8.2e-95 Score=844.89 Aligned_cols=612 Identities=22% Similarity=0.245 Sum_probs=500.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCC------CCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~------GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
..+.++++++++.||+++++||.+++. ||+|+++|+++|+.+||.++||++ |+|.+|| +|+|+||.+|++
T Consensus 83 pgd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~---~~~~~~D-~V~skGHasp~l 158 (896)
T PRK13012 83 PGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGR---DDAGGGD-LVYFQPHSAPGI 158 (896)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCC---CCCCCCC-EEEECcchHHHH
Confidence 556777888999999999999999998 999999999999999999999987 4788999 699999999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhc--CCCCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~--~~~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
|+.+++.|++ +.++|++|||. ++.+++||++...| +++++||++|+|+++|+|+|++.||+..+. -.+..++
T Consensus 159 YA~~~l~G~l--~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g---~~~~~~~ 233 (896)
T PRK13012 159 YARAFLEGRL--SEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRG---LKDTSGR 233 (896)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccc---cccCCCC
Confidence 9999999996 99999999998 45566899987777 699999999999999999999999875431 1123579
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-c-chhHHHHHhccCceEEEE----------
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-F-TENVDKRFEGLGWHVIWV---------- 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~-~~~~~~~~~a~G~~~~~v---------- 300 (719)
+|||++|||||+||++|||+.+|++++|+|||||||+|.+++|+++... . .+++.++|+++||+|++|
T Consensus 234 ~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~ 313 (896)
T PRK13012 234 KVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALF 313 (896)
T ss_pred eEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHh
Confidence 9999999999999999999999999999999999999999999999643 2 589999999999999965
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 314 ~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~ 393 (896)
T PRK13012 314 ARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQ 393 (896)
T ss_pred cCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCC
Confidence
Q ss_pred ------eeeecCCCc-cccccccccC-CCCCHHHHHHHHHHcCCCCC-------CCCCcHHHHHHHHHHhhcchhHHHHH
Q 005021 301 ------TTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLEAEW 365 (719)
Q Consensus 301 ------~t~~g~g~~-~~~~~~~~h~-~~l~~~~~~~~~~~l~~~~~-------~~~~~~~v~~~~~~~~~~g~~~~~~~ 365 (719)
+|+||+|.+ ..+++..+|+ .+++.++++.+++.+++|.+ ||..|++....++.+..++
T Consensus 394 PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~------- 466 (896)
T PRK13012 394 PTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARR------- 466 (896)
T ss_pred CEEEEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHHHHHHHH-------
Confidence 799999976 5577888998 78999999999999999765 7888877666654432221
Q ss_pred HHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhh---CCceEEEecCCCCCccc
Q 005021 366 NAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKT---LPGLLGGSADLASSNMT 442 (719)
Q Consensus 366 ~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~---dp~iv~~saDl~~s~~~ 442 (719)
+.+.+|.+..+ ..... ++...+..|...++. ....+.+||.+|+++|.+|++. .|+||++++|++.++++
T Consensus 467 -~~l~g~~P~r~---~~~~~-l~~p~~~~~~~~~~~--~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm 539 (896)
T PRK13012 467 -AALGGYLPRRR---TAAPP-LPVPPLSAFAQFALG--AGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGM 539 (896)
T ss_pred -HHhcCcCCccc---ccccc-cCCCchhhHHHhhcc--cCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCc
Confidence 13334432111 11111 111112223222221 1235689999999999999987 99999999999855432
Q ss_pred ---------cccc-----------cccCcccCCCCCccccccccchHHH--HHHHH--HhcCCCCccEEEehhhh-HHhH
Q 005021 443 ---------LLKM-----------FGDFQKDTPEERNVRFGVREHGMGA--ICNGI--ALHSPGLIPYCATFFVF-TDYM 497 (719)
Q Consensus 443 ---------~~~g-----------~~~f~~~~~p~R~~d~GIaE~~~vg--~AaGl--A~~G~~~~Pv~~~y~~F-~~ra 497 (719)
+... +..|. ++||+|||++||+||+|++ +|+|+ |++|.|++||+.+|+.| .+|+
T Consensus 540 ~~~f~~~~i~~~~gq~y~~~d~~~~~~yk-e~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~ 618 (896)
T PRK13012 540 ANLFRQVGIYSPLGQLYEPEDAGSLLYYR-EAKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRV 618 (896)
T ss_pred ccccccccccccccccccccchhHHhhhh-hCCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHH
Confidence 1111 12232 4899999999999999987 77777 55565589999999999 6799
Q ss_pred HHHHHHH-hhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc-----CCCcEE
Q 005021 498 RAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN-----RKRPSI 571 (719)
Q Consensus 498 ~dqir~~-a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~-----~~~P~~ 571 (719)
+||||+. +++..+|+++++|+|.++|++|+|||+++|++++|+||||+||.|+|+.|++.+++.++++ .++|+|
T Consensus 619 ~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~Y 698 (896)
T PRK13012 619 GDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYY 698 (896)
T ss_pred HHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 9999987 6777789999999999999999999999999999999999999999999999999998743 268999
Q ss_pred EEEcCCCCC--CCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC-CCcEEEEecCChhhHHHH
Q 005021 572 LALSRQKLP--HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFDEQ 648 (719)
Q Consensus 572 irl~r~~~~--~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~l~pld~~ 648 (719)
||++|++++ .++.+..+.+.+|+|++.+.. .++|++||++|++|++|++||++|+++ ||+++|||++|++|||++
T Consensus 699 IrL~r~~~~~p~~~~~~~~~i~kG~y~l~~~~--~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d 776 (896)
T PRK13012 699 LTVMNENYAQPALPEGAEEGILKGMYRLAAAA--EAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRD 776 (896)
T ss_pred EEecCCCCCCCCCCccchhccccCcEEEeccC--CCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHH
Confidence 999999884 444432356888999886532 257999999999999999999999999 999999999999999999
Q ss_pred HH----------------HhhhhhccCCCceEEEEcccc---ccCchhhhcCCceEEeeCcCCCCCCHHHHHHHhCCCHH
Q 005021 649 SD----------------AYKESVLPAAVSARVSIEAGS---TFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAE 709 (719)
Q Consensus 649 ~~----------------~~~~sv~~~~~~~vvvvE~~~---~~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~~e 709 (719)
.+ .|...+++...+.+|+++++. ...|.+++..++.++|+|.|+.||++++|+++||+|++
T Consensus 777 ~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~Va~~D~~~aVae~l~~~~~~~~~~LGvD~FG~Sg~~~~L~~~fGlda~ 856 (896)
T PRK13012 777 GLAAERANLLGPAEEARVPYVTQCLAGTRGPVVAATDYVRAVPEQIRAFVPARYVTLGTDGFGRSDTRAALRRFFEVDRH 856 (896)
T ss_pred HHHHHHHhhcCCCccccccHHHHhhcccCCCeEEecchHHHHHHHHHHhCCCCeEEEeeCCCCCCCCHHHHHHHhCCCHH
Confidence 66 555566654222358888863 34566677667788999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 005021 710 AVITAAKEVC 719 (719)
Q Consensus 710 ~I~~~i~~~l 719 (719)
.|+++++++|
T Consensus 857 ~Iv~aal~~L 866 (896)
T PRK13012 857 SIVLAALKAL 866 (896)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 15
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=7.3e-96 Score=834.61 Aligned_cols=505 Identities=21% Similarity=0.282 Sum_probs=406.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
.+.|+++|++||+.+++++++. +||+|++||++||+++||++ ||. +|||||||+|||+ |+|++++|+
T Consensus 81 ~~~L~~la~eiR~~ii~~~~~~-~GHlgssLs~vEl~~aL~~v---f~~------p~DriI~s~GHqa---ya~~~ltgr 147 (641)
T PLN02234 81 IKELKVLSDELRSDVIFNVSKT-GGHLGSNLGVVELTVALHYI---FNT------PHDKILWDVGHQS---YPHKILTGR 147 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCccccchHHHHHHHHHHh---cCC------CCCeEEEecchhH---HHHHHHHhh
Confidence 4569999999999999999985 99999999999999999985 552 5899999999999 999999994
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (719)
+++|.+|||.+| +.|||++.++|||++++||+|+|||.|+|||+|+++++ .+++|||++||||++
T Consensus 148 ----~~~l~t~r~~gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g----------~~~~v~~viGDGel~ 212 (641)
T PLN02234 148 ----RGKMKTIRQTNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKG----------MNNSVVSVIGDGAMT 212 (641)
T ss_pred ----hhhhcccccCCC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCC----------CCCeEEEEEccchhh
Confidence 578999999999 55999999999999999999999999999999999886 478999999999999
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEeCCCCC------cccchhhh-cc---------------hhHHHHHhccCceEE-EEe
Q 005021 245 EGIANEASSLAGHLGLGKLIAFYDDNHIS------IDGDTEIA-FT---------------ENVDKRFEGLGWHVI-WVT 301 (719)
Q Consensus 245 eG~~~EAln~A~~~~L~nli~ivddN~~s------is~~~~~~-~~---------------~~~~~~~~a~G~~~~-~v~ 301 (719)
||++|||||+|++.+ +|||+|+|||+++ +++++... .. ++..++|++|||+++ .|
T Consensus 213 eG~~wEAl~~a~~~~-~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~v- 290 (641)
T PLN02234 213 AGQAYEAMNNAGYLH-SNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPV- 290 (641)
T ss_pred hHHHHHHHHHHhhhC-CCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeE-
Confidence 999999999999765 8999999999994 56655321 11 356789999999988 54
Q ss_pred eeecCCCccccccccccCCCCCHHHHHHHHHHcCC-C-CCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchh
Q 005021 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-P-YEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 379 (719)
Q Consensus 302 t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~-~-~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (719)
.| | +-+++...+++... + .+|..+- . .+.||+.+ .+.+..+..
T Consensus 291 --DG------------H----d~~~l~~al~~~k~~~~~~P~vI~------~--~T~KGkGv---------~~~E~~~~~ 335 (641)
T PLN02234 291 --DG------------H----NIDDLVSILETLKSTKTIGPVLIH------V--VTEKGRGY---------PYAERADDK 335 (641)
T ss_pred --CC------------C----CHHHHHHHHHHHHhcCCCCCEEEE------E--EEecCCCc---------chhhcCCcc
Confidence 12 1 22333333332221 1 1232211 0 22334322 123444555
Q ss_pred hhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCc
Q 005021 380 AAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERN 459 (719)
Q Consensus 380 ~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~ 459 (719)
+|... |.+.+...+ ........+++++|+++|.+++++||+|+++++|+++++. ++.|++ +||+||
T Consensus 336 ~H~~~-------~~~~~~g~~-~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~-----~~~f~~-~fPdR~ 401 (641)
T PLN02234 336 YHGVL-------KFDPETGKQ-FKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTM-----LNLFES-RFPTRC 401 (641)
T ss_pred cCCCC-------CCCcccccc-ccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcc-----hHHHHH-Hccccc
Confidence 55321 111100000 0011123578999999999999999999999999976432 466866 899999
Q ss_pred cccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHH
Q 005021 460 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 538 (719)
Q Consensus 460 ~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~l 538 (719)
||+|||||+|||+|+|||+.| ++|||++|++|++|+||||++ +|++++||+|++++.|+ +|+||+|||+++|+++|
T Consensus 402 fdvGIAEq~~Vg~AaGLA~~G--~rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~-~g~dG~TH~~~~Dia~l 478 (641)
T PLN02234 402 FDVGIAEQHAVTFAAGLACEG--LKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGL-MGADGPTHCGAFDVTFM 478 (641)
T ss_pred cCCCcCHHHHHHHHHHHHHCC--CeEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCcc-CCCCCccccccHHHHHH
Confidence 999999999999999999999 699999999999999999875 59999999999977665 58899999999999999
Q ss_pred cCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC--CC-CccccccccEEEecCCCCCCCCEEEEEeCH
Q 005021 539 RAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GT-SIDGVEKGAYIISDNSSGNKPDVILIGTGS 615 (719)
Q Consensus 539 r~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~--~~-~~~~~~~G~~~i~~~~~~~g~dvtIva~G~ 615 (719)
|+||||+|++|+|+.|++.++++|+...++|+|||++|+..+... .. ....+++|+++++++ |.|+|||+||+
T Consensus 479 r~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~~vlre----G~dvtIva~G~ 554 (641)
T PLN02234 479 ACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRD----GERVALLGYGS 554 (641)
T ss_pred hcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCCCCccccccCceEEEEEe----CCCEEEEEecH
Confidence 999999999999999999999998865579999999998764322 11 123578999988887 78999999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhh
Q 005021 616 ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIV 679 (719)
Q Consensus 616 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~ 679 (719)
||++|++||++|+++||+++|||++|++|||.+.+ .++.+++. .+||+||+...|+++.+
T Consensus 555 ~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i---~sl~k~~~-~vVt~Ee~~~GG~Gs~V 614 (641)
T PLN02234 555 AVQRCLEAASMLSERGLKITVADARFCKPLDVALI---RSLAKSHE-VLITVEEGSIGGFGSHV 614 (641)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHH---HHHHHhCC-EEEEECCCCCCcHHHHH
Confidence 99999999999999999999999999999999875 36777764 46999999998887644
No 16
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=7.4e-95 Score=835.99 Aligned_cols=546 Identities=23% Similarity=0.295 Sum_probs=441.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
|+.++ |+++|++||+++++|+.+ ++||+|++||++|++++||+. ||+ +|||||||+||++ |+++++
T Consensus 19 ~~~~~-l~~~a~~iR~~~~~~~~~-~~gH~g~~ls~~~i~~~L~~~---~~~------~rDr~ils~GH~~---y~~~~~ 84 (580)
T PRK05444 19 LSEEE-LPQLADEIREFLIDVVSK-TGGHLGSNLGVVELTVALHYV---FDT------PKDRIIWDVGHQA---YPHKIL 84 (580)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHh-cCCCcCCCccHHHHHHHHHHh---cCC------CCccEEEeccHHH---HHHHHH
Confidence 55444 999999999999999987 799999999999999999975 664 8999999999999 999999
Q ss_pred hCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc
Q 005021 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (719)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (719)
+|+ .++|++||+.+|+ +|||++.++||+++++|++|+|++.|+|+|+|.|+++. .+++|||++|||
T Consensus 85 ~g~----~~~l~~~~~~~s~-~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~---------~~~~v~~i~GDG 150 (580)
T PRK05444 85 TGR----RDRFDTLRQKGGL-SGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGG---------EDRKVVAVIGDG 150 (580)
T ss_pred hCc----HHHhcCcccCCCC-CCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCC---------CCCeEEEEEccc
Confidence 994 6889999999995 69999888999999999999999999999999998731 368999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh----cchhHHHHHhccCceEEEEeeeecCCCccccccccc
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA----FTENVDKRFEGLGWHVIWVTTTIGFGSPNKANSYSV 317 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~----~~~~~~~~~~a~G~~~~~v~t~~g~g~~~~~~~~~~ 317 (719)
+++||++|||+++|++++ .||++|+|||+++|+++++.. ...++.++|++|||+++.+ +.|.
T Consensus 151 ~l~eG~~~Eal~~A~~~~-~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~--vdG~----------- 216 (580)
T PRK05444 151 ALTGGMAFEALNNAGDLK-SDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGP--IDGH----------- 216 (580)
T ss_pred ccccCHHHHHHHHHHhhC-CCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeee--eCCC-----------
Confidence 999999999999999999 689999999999999998632 2356788999999998841 1221
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccc
Q 005021 318 HGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEK 397 (719)
Q Consensus 318 h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~ 397 (719)
+.+++...+++......|..+.- .+.+|+.+. +.++++..+|... +..-..
T Consensus 217 -----d~~~l~~al~~a~~~~~P~lI~~--------~T~kg~G~~---------~~e~~~~~~h~~~-------~~~~~~ 267 (580)
T PRK05444 217 -----DLDALIETLKNAKDLKGPVLLHV--------VTKKGKGYA---------PAEADPIKYHGVG-------KFDPET 267 (580)
T ss_pred -----CHHHHHHHHHHHHhCCCCEEEEE--------EecCCcCCC---------hhhcCccccCCCC-------CCCccc
Confidence 22343333332111112322110 123333211 1223333344211 100000
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHH
Q 005021 398 ALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIA 477 (719)
Q Consensus 398 ~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA 477 (719)
............++|++++++|.+++++||+++++++|+.+++. +.+|++ +||+||||+||+||+|+|+|+|||
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~-----~~~f~~-~~p~R~i~~GIaE~~mvg~A~GlA 341 (580)
T PRK05444 268 GEQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTG-----LVKFSK-RFPDRYFDVGIAEQHAVTFAAGLA 341 (580)
T ss_pred CCccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCC-----HHHHHH-HhhhhccCCChHHHHHHHHHHHHH
Confidence 00000001122578999999999999999999999999865532 345866 899999999999999999999999
Q ss_pred hcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHH
Q 005021 478 LHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 556 (719)
Q Consensus 478 ~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~ 556 (719)
+.| ++||+++|++|++|++|||++ .|++++||+++++|+|. .|+||+|||++||+++||+|||++|++|+|+.|++
T Consensus 342 ~~G--~~p~~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~-~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~ 418 (580)
T PRK05444 342 TEG--LKPVVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGL-VGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELR 418 (580)
T ss_pred HCC--CeeEEEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHH
Confidence 999 699999999999999999987 59999999999999987 57899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEE
Q 005021 557 GAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 636 (719)
Q Consensus 557 ~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~V 636 (719)
+++++|++..++|+|||++|+..+..+.+..+.+++|++.++++ |+|+|||++|+||++|++|+++|+ +++|
T Consensus 419 ~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~Gk~~vl~~----G~dvtIia~G~~v~~al~Aa~~L~----~~~V 490 (580)
T PRK05444 419 QMLYTALAYDDGPIAIRYPRGNGVGVELPELEPLPIGKGEVLRE----GEDVAILAFGTMLAEALKAAERLA----SATV 490 (580)
T ss_pred HHHHHHHhCCCCcEEEEecCCCCCCCCCCCcccccCCceEEEEc----CCCEEEEEccHHHHHHHHHHHHhC----CCEE
Confidence 99999996458999999999987654322235688999998887 789999999999999999999995 8999
Q ss_pred EecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhhh---------cCCceEEee-CcCCCCCCHHHHHHHhC
Q 005021 637 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV---------GSKGKAIGI-DRFGASAPAGKIYKEFG 705 (719)
Q Consensus 637 Id~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~~---------~~~~~~ig~-d~f~~~g~~~el~~~~g 705 (719)
||++|++|||++.+. +++.+++ .+|++||+.. .||++.+ ..++.++|+ |.|+++|++++|+++||
T Consensus 491 Id~~~i~p~D~~~i~--~~~~~~~--~vv~vEe~~~~gG~g~~va~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g 566 (580)
T PRK05444 491 VDARFVKPLDEELLL--ELAAKHD--LVVTVEEGAIMGGFGSAVLEFLADHGLDVPVLNLGLPDEFIDHGSREELLAELG 566 (580)
T ss_pred EEeCcCCccCHHHHH--HHHhcCC--eEEEEECCCCCCCHHHHHHHHHHhhcCCCCEEEEecCCcCCCCCCHHHHHHHHC
Confidence 999999999998764 3444443 3699999998 5787643 235678999 89999999999999999
Q ss_pred CCHHHHHHHHHHhC
Q 005021 706 ITAEAVITAAKEVC 719 (719)
Q Consensus 706 l~~e~I~~~i~~~l 719 (719)
||+++|+++|++++
T Consensus 567 l~~~~I~~~i~~~~ 580 (580)
T PRK05444 567 LDAEGIARRILELL 580 (580)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999999864
No 17
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4.3e-94 Score=826.12 Aligned_cols=543 Identities=19% Similarity=0.231 Sum_probs=438.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
++ .+.|++||++||.++++.+.+ ++||++++||++|++++||++ ||+ ++|+||||+||++ |+|+++
T Consensus 15 l~-~~~l~~l~~~ir~~~~~~~~~-~~Gh~~~~lg~vel~~al~~~---f~~------~~D~ii~d~ghr~---~~~~l~ 80 (581)
T PRK12315 15 LS-LDELEQLASEIRTALLEKDSA-HGGHVGPNLGVVELTIALHYV---FNS------PKDKIVWDVSHQS---YPHKML 80 (581)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHh-cCCCcCcchhHHHHHHHHHhh---cCC------CCCcEEEecCCch---HHHHHH
Confidence 44 456999999999999999976 899999999999999999988 887 7999999999999 999999
Q ss_pred hCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc
Q 005021 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (719)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (719)
+|+ ...+.+.|++++.+ |||++.+++++.+.+||+|+|+|.|+|+|+|.|+++ .+++|||++|||
T Consensus 81 ~G~----~~~~~~~~~~g~~~-G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~----------~~~~vv~~iGDG 145 (581)
T PRK12315 81 TGR----KEAFLDPDHYDDVT-GYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKG----------EKGNIIAVIGDG 145 (581)
T ss_pred cCC----ccchhhHHHcCCCC-CCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcC----------CCCeEEEEECch
Confidence 995 45567888888887 999998888888999999999999999999999876 378999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh----------cchhHHHHHhccCceEEEEeeeecCCCccc
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA----------FTENVDKRFEGLGWHVIWVTTTIGFGSPNK 311 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~----------~~~~~~~~~~a~G~~~~~v~t~~g~g~~~~ 311 (719)
+++||++|||||+|+.|++ |||+|||||+|+|+++++.. ...++.++|++|||+++.| +.|.
T Consensus 146 ~~~eG~~~EAln~A~~~k~-~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v--~DG~----- 217 (581)
T PRK12315 146 SLSGGLALEGLNNAAELKS-NLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYV--EDGN----- 217 (581)
T ss_pred hhhcchHHHHHHHHHhhCC-CEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEe--eCCC-----
Confidence 9999999999999999995 89999999999999998531 1234578999999998874 1121
Q ss_pred cccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhh--hcCchhhhhhhhhhcC
Q 005021 312 ANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYE--KKYPEEAAEFKSISSG 389 (719)
Q Consensus 312 ~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~g 389 (719)
+-+++...+++......|. +.+..+.++++|. ++++..+|..
T Consensus 218 -----------D~~~l~~a~~~a~~~~gP~-------------------~i~~~T~kG~G~~~~~~~~~~~h~~------ 261 (581)
T PRK12315 218 -----------DIESLIEAFKEVKDIDHPI-------------------VLHIHTLKGKGYQPAEENKEAFHWH------ 261 (581)
T ss_pred -----------CHHHHHHHHHHHHhCCCCE-------------------EEEEEeecCCCCChhhcCHHhcCCC------
Confidence 2223322222211001122 2222222233332 2344444431
Q ss_pred CCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchH
Q 005021 390 QLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGM 469 (719)
Q Consensus 390 ~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~ 469 (719)
.|.+.....+.. .....+++++++++|.+++++||+++++++|+.++. ++.+|++ +||+||||+|||||+|
T Consensus 262 -~~f~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~-----~~~~f~~-~fP~R~id~GIaEq~~ 332 (581)
T PRK12315 262 -MPFDLETGQSKV--PASGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVF-----GLKEFRK-KYPDQYVDVGIAEQES 332 (581)
T ss_pred -CCCCcccCcccC--CCCCcCHHHHHHHHHHHHhccCCCEEEEeCcccccc-----CcHHHHH-hccccccCCCchHHHH
Confidence 111110000000 001357899999999999999999999999986553 2456866 8999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEe
Q 005021 470 GAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLR 548 (719)
Q Consensus 470 vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~ 548 (719)
+++|+|||+.| ++||+++|++|++|++|||++ +|++++||+|+++++|++ + ||+|||++||+++||+||||+|++
T Consensus 333 v~~AaGlA~~G--~~Pvv~~fs~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~-~-dG~TH~~~~Dia~lr~iPnl~V~~ 408 (581)
T PRK12315 333 VAFASGIAANG--ARPVIFVNSTFLQRAYDQLSHDLAINNNPAVMIVFGGSIS-G-NDVTHLGIFDIPMISNIPNLVYLA 408 (581)
T ss_pred HHHHHHHHHCc--CeEEEEeeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-C-CCccccccHHHHHHhcCCCCEEEe
Confidence 99999999999 699999999999999999886 599999999999777664 4 999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHH
Q 005021 549 PADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELR 628 (719)
Q Consensus 549 P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~ 628 (719)
|+|+.|++.++++|++..++|+|||++|+..+..+..+ ..+..+++.++++ |.|+|||++|+||++|++||++|+
T Consensus 409 P~d~~e~~~~l~~a~~~~~gP~~ir~~r~~~~~~~~~~-~~~~~~k~~v~~~----g~dvtiia~G~~v~~Al~Aa~~L~ 483 (581)
T PRK12315 409 PTTKEELIAMLEWALTQHEHPVAIRVPEHGVESGPTVD-TDYSTLKYEVTKA----GEKVAILALGDFYELGEKVAKKLK 483 (581)
T ss_pred cCCHHHHHHHHHHHHhCCCCcEEEEEcCCccCCCCCCc-cCcccceEEEEec----CCCEEEEEEchHHHHHHHHHHHHh
Confidence 99999999999999964479999999999876543321 2345678888887 689999999999999999999999
Q ss_pred hC-CCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC-chhh----hc---CCceEEee-CcCCCCCCHH
Q 005021 629 KG-GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG-WEKI----VG---SKGKAIGI-DRFGASAPAG 698 (719)
Q Consensus 629 ~~-Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G-~~~~----~~---~~~~~ig~-d~f~~~g~~~ 698 (719)
++ ||+++|||++|++|||++.+. ++.++.. .+||+||+...| |++. +. .++.++|+ |.|+.+|+++
T Consensus 484 ~~~gi~~~Vid~~~ikPlD~~~i~---~~~~~~~-~vvtvEe~~~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~ 559 (581)
T PRK12315 484 EELGIDATLINPKFITGLDEELLE---KLKEDHE-LVVTLEDGILDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVE 559 (581)
T ss_pred hhcCCCEEEEecCcCCCCCHHHHH---HHHhhCC-EEEEEcCCCcCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHH
Confidence 88 999999999999999999764 4555554 469999998854 7653 32 24568999 7899999999
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 005021 699 KIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 699 el~~~~gl~~e~I~~~i~~~l 719 (719)
+|++++|||+++|+++|+++|
T Consensus 560 ~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 560 ELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred HHHHHHCcCHHHHHHHHHHHh
Confidence 999999999999999999875
No 18
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=3.6e-93 Score=827.27 Aligned_cols=610 Identities=22% Similarity=0.252 Sum_probs=477.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~------~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
+.+.++++++++.||+++++|+.+++ +||+|+++|++||+.+||.++||++ +.|.+|| ||+|+||++|++
T Consensus 69 pgd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~---~~~~~rD-~VlskGHasp~l 144 (889)
T TIGR03186 69 PGDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAA---GDASGGD-LVYFQPHSAPGV 144 (889)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCC---CCCCCCC-EEEECCchHHHH
Confidence 55778899999999999999999999 7999999999999999999999853 4477888 799999999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhc--CCCCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~--~~~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
|+.+++.|++ +.++|++|||. ++.+++||++...| +++++||++|||++.|+|||++.|+++.+|.+. ..++
T Consensus 145 YA~l~l~G~l--~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~---~~~~ 219 (889)
T TIGR03186 145 YARAFLEGFL--SDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLAR---TEGR 219 (889)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccC---CCCc
Confidence 9999999996 99999999998 66677877775556 699999999999999999999999887663222 2579
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEEE----------
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV---------- 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~v---------- 300 (719)
+|||++||||++||++|||+.+|++++|+|||+|||+|++++|+++.. ...+++.++|++|||+|++|
T Consensus 220 rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~ 299 (889)
T TIGR03186 220 KVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALF 299 (889)
T ss_pred eEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhh
Confidence 999999999999999999999999999999999999999999999974 33689999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 300 ~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~ 379 (889)
T TIGR03186 300 ARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGR 379 (889)
T ss_pred ccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCC
Confidence
Q ss_pred ------eeeecCCCcccc-ccccccC-CCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcch--hHHHHHHHHHh
Q 005021 301 ------TTTIGFGSPNKA-NSYSVHG-SALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGA--TLEAEWNAKFA 370 (719)
Q Consensus 301 ------~t~~g~g~~~~~-~~~~~h~-~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~--~~~~~~~~~~~ 370 (719)
+|+||+|..... ....+|+ .+++.++++.+++.+++|...-.+.. ..+|+.. ...+ .+..+....+.
T Consensus 380 PTvIla~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~--~~~~~~~-~~s~~~~~l~~~r~~l~ 456 (889)
T TIGR03186 380 PTVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQ--LKFYKPD-EDSAEMRYLHARRAALG 456 (889)
T ss_pred CEEEEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhc--ccccCCC-CCCHHHHHHHHHHHHcC
Confidence 799999975543 3567788 78999999999999998542110000 0011100 0000 01111111222
Q ss_pred hhhhcCchhhh-hhhhhhcCCCCCcccccCCCCCC--CCCcchHHHHHHHHHHHHHh---hCCceEEEecCCCCCcccc-
Q 005021 371 EYEKKYPEEAA-EFKSISSGQLPAGWEKALPTYTP--ESPAEATRNLSQTCLNALAK---TLPGLLGGSADLASSNMTL- 443 (719)
Q Consensus 371 ~~~~~~p~~~~-~~~~~~~g~~p~~~~~~~~~~~~--~~~~~s~r~a~~~~L~~l~~---~dp~iv~~saDl~~s~~~~- 443 (719)
.|.+..+.... .+ ..|. ...++.+.. .....+|+.+|+++|..|++ ..++||.+.+|+..+++..
T Consensus 457 g~~p~r~~~~~~~~------~~p~--~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~ 528 (889)
T TIGR03186 457 GYLPRRRTAATHAL------AVPA--LPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMAN 528 (889)
T ss_pred CCCCCCCCCCcccc------CCCC--cchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchh
Confidence 23221111000 00 0121 011222332 23568999999999777776 4578999999998765221
Q ss_pred -ccc------------------cccCcccCCCCCccccccccchHHH--HHHHHHhc--CCCCccEEEehhhhH-HhHHH
Q 005021 444 -LKM------------------FGDFQKDTPEERNVRFGVREHGMGA--ICNGIALH--SPGLIPYCATFFVFT-DYMRA 499 (719)
Q Consensus 444 -~~g------------------~~~f~~~~~p~R~~d~GIaE~~~vg--~AaGlA~~--G~~~~Pv~~~y~~F~-~ra~d 499 (719)
++. +..|. +.+|+|||++||+||+|++ +|+|+|+. |.|++||+++|+.|. +|++|
T Consensus 529 ~f~~~gi~~~~gq~y~~~d~~~~~~y~-e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~D 607 (889)
T TIGR03186 529 LFRQVGIYSPLGQRYEPEDLGSMLYYR-EDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGD 607 (889)
T ss_pred hhccccccCcccccCCccchHHHHHHh-hcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHH
Confidence 111 12232 4789999999999999999 99997766 444799999999996 79999
Q ss_pred HHHHHhhhcCCEEEEEecCCC-ccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----c-CCCcEEEE
Q 005021 500 AIRISALCEAGVIYVMTHDSI-GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA----N-RKRPSILA 573 (719)
Q Consensus 500 qir~~a~~~~pV~~v~~~~g~-g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~-~~~P~~ir 573 (719)
|||+.|+++.+|++++++.|. ++|++|+|||++||++++|+||||+||.|+|+.|++.+++.+++ . .++|+|||
T Consensus 608 qir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlR 687 (889)
T TIGR03186 608 LIWAAADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLT 687 (889)
T ss_pred HHHHHhhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999 69999999999999999999999999999999999999998774 1 47999999
Q ss_pred EcCCCC--CCCCCCCccccccc----cEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC-CCcEEEEecCChhhHH
Q 005021 574 LSRQKL--PHLAGTSIDGVEKG----AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFD 646 (719)
Q Consensus 574 l~r~~~--~~~~~~~~~~~~~G----~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~l~pld 646 (719)
+.|.+. |..+.+....+..| .|++.+.. ..|+||+||++|.|+++|++||++|+++ ||+++|||++|+||||
T Consensus 688 l~r~~~~~p~~~~~~~~~~~~gi~kg~y~l~~~~-~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLd 766 (889)
T TIGR03186 688 VTNENYAQPSLPEDRLDAVRRGILKGMYPLDPAA-LAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELA 766 (889)
T ss_pred eCCCCCCCCCcCCCcccchhcchhheeeEeeccC-CCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhH
Confidence 999977 44443311223344 37776311 0168999999999999999999999987 9999999999999999
Q ss_pred HHHHHhhhhhccCCCceEEEEccc---cc-cCchh---------------------hhcCCceEEeeCcCCCCCCHHHHH
Q 005021 647 EQSDAYKESVLPAAVSARVSIEAG---ST-FGWEK---------------------IVGSKGKAIGIDRFGASAPAGKIY 701 (719)
Q Consensus 647 ~~~~~~~~sv~~~~~~~vvvvE~~---~~-~G~~~---------------------~~~~~~~~ig~d~f~~~g~~~el~ 701 (719)
++.+. +.+.+ .++++|++ +. .|++. ++..++.++|+|.|+.+|++++|+
T Consensus 767 rd~i~----a~r~~--~l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~p~~~~~LG~D~FG~Sgtr~~Lr 840 (889)
T TIGR03186 767 RDGRA----AERAQ--RLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTLGTDGFGRSDTRAALR 840 (889)
T ss_pred HHHHH----HHHhC--CcccccccccccHhhhhCCCCCCeeeecchHHHHHHHHHhhCCCCEEEeccCCCCCcCCHHHHH
Confidence 99875 22233 35899997 43 33443 223467789999999999999999
Q ss_pred HHhCCCHHHHHHHHHHhC
Q 005021 702 KEFGITAEAVITAAKEVC 719 (719)
Q Consensus 702 ~~~gl~~e~I~~~i~~~l 719 (719)
++||||++.|+.+++++|
T Consensus 841 ~~fglda~~Iv~aal~~L 858 (889)
T TIGR03186 841 AFFEVDRASIVIAALQAL 858 (889)
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 999999999999998764
No 19
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=1e-88 Score=790.24 Aligned_cols=609 Identities=22% Similarity=0.250 Sum_probs=473.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCC------CCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~------GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
..+.++.+++++.||++++.||.++++ ||+|+++|+++|+.+||.++||. |++| .+|| ||+|+||.+|++
T Consensus 75 pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~-~~~~--~~~D-~V~skGHasp~l 150 (891)
T PRK09405 75 PGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRA-PNEP--HGGD-LVFFQGHASPGI 150 (891)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCC-CCCC--CCCC-EEEECchHHHHH
Confidence 556778888999999999999999987 99999999999999999999984 4555 3677 999999999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhc--CCCCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~--~~~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
|+.+++.|++ +.++|++|||. ++.++|||++...| +++++||++|+|++.|+|+|++.||+..+ .-.+..++
T Consensus 151 YA~~~l~G~l--~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~---~~~~~~~~ 225 (891)
T PRK09405 151 YARAFLEGRL--TEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENR---GLKDTSDQ 225 (891)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCcccccc---ccccCCCc
Confidence 9999999996 99999999997 76778999987766 69999999999999999999999987532 11122579
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEEE----------
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV---------- 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~v---------- 300 (719)
+|||++|||||+||++|||+.+|++++|+|||||||+|++++|+++.. ...+++.++|+++||+|++|
T Consensus 226 rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~ 305 (891)
T PRK09405 226 KVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLL 305 (891)
T ss_pred eEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhh
Confidence 999999999999999999999999999999999999999999999964 23689999999999999875
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 306 ~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~ 385 (891)
T PRK09405 306 AKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQ 385 (891)
T ss_pred ccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCC
Confidence
Q ss_pred ------eeeecCCC-ccccccccccCC-CCCHHHHHHHHHHcCCCCC-------CCCCcHHHHHHHHHHhhcchhHHHHH
Q 005021 301 ------TTTIGFGS-PNKANSYSVHGS-ALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLEAEW 365 (719)
Q Consensus 301 ------~t~~g~g~-~~~~~~~~~h~~-~l~~~~~~~~~~~l~~~~~-------~~~~~~~v~~~~~~~~~~g~~~~~~~ 365 (719)
+|+||+|. +..+++..+|+. +++.++++.+++.+++|.. |+..|++--..+ .+..+.
T Consensus 386 PtvIia~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~--------~~l~~~ 457 (891)
T PRK09405 386 PTVILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEI--------KYLHER 457 (891)
T ss_pred CEEEEEeceecCCCCcccCCCccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHH--------HHHHHH
Confidence 69999997 777888888984 8899999999999998642 333222100000 011111
Q ss_pred HHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCC---C--CCCcchHHHHHHHHHHHHHhh---CCceEEEecCCC
Q 005021 366 NAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYT---P--ESPAEATRNLSQTCLNALAKT---LPGLLGGSADLA 437 (719)
Q Consensus 366 ~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~---~--~~~~~s~r~a~~~~L~~l~~~---dp~iv~~saDl~ 437 (719)
...+..|-+..+.....+ ++|. .+.|. + +....+||.+|+++|.+|++. +++||.+.+|++
T Consensus 458 r~~l~g~~p~r~~~~~~~------~~P~-----~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a 526 (891)
T PRK09405 458 RKALGGYLPARRPKFEPL------EVPA-----LSAFEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEA 526 (891)
T ss_pred HHHcCCCCCCCCCCCCCC------CCCC-----hhhHHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccc
Confidence 122223322111111100 0121 11221 1 124689999999999999996 899999999998
Q ss_pred CCcccc--cc------------------ccccCcccCCCCCccccccccchHHH--HHHHHHhc--CCCCccEEEehhhh
Q 005021 438 SSNMTL--LK------------------MFGDFQKDTPEERNVRFGVREHGMGA--ICNGIALH--SPGLIPYCATFFVF 493 (719)
Q Consensus 438 ~s~~~~--~~------------------g~~~f~~~~~p~R~~d~GIaE~~~vg--~AaGlA~~--G~~~~Pv~~~y~~F 493 (719)
.++++. ++ .+..|. ++||+|||++||+||+|++ +|+|+|+. |.|++||+++|+.|
T Consensus 527 ~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yk-e~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F 605 (891)
T PRK09405 527 RTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYK-ESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMF 605 (891)
T ss_pred cccCcchhhccccccccccccccccccHHHHHHH-HcCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHh
Confidence 765541 01 113454 4899999999999999999 99997766 54479999999999
Q ss_pred -HHhHHHHHHHH-hhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCC
Q 005021 494 -TDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKR 568 (719)
Q Consensus 494 -~~ra~dqir~~-a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~ 568 (719)
.+|++||||+. |+++.+|+++++++|.+++.+|.|||..+|++++|+||||+||.|+|+.|++.+++.+++ ...+
T Consensus 606 ~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~ 685 (891)
T PRK09405 606 GFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQE 685 (891)
T ss_pred hhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 67999999986 999999999999999999999999999999999999999999999999999999999875 1244
Q ss_pred --cEEEEEcCCCCCCCCCCCcccccccc--EEEecCCC-CCCCCEEEEEeCHhHHHHHHHHHHHHh-CCCcEEEEecCCh
Q 005021 569 --PSILALSRQKLPHLAGTSIDGVEKGA--YIISDNSS-GNKPDVILIGTGSELEIAAKAAEELRK-GGKAVRVVSFVSW 642 (719)
Q Consensus 569 --P~~irl~r~~~~~~~~~~~~~~~~G~--~~i~~~~~-~~g~dvtIva~G~~v~~al~Aa~~L~~-~Gi~v~VId~~~l 642 (719)
|.|||+...+....+.+....+.+|+ |.+++... ..+.||+||++|.+|++|++||++|++ +||+++|||++|+
T Consensus 686 ~~~yYlrl~ne~~~~~~~pe~~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~Si 765 (891)
T PRK09405 686 NVFYYITVMNENYHQPAMPEGAEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSF 765 (891)
T ss_pred CeEEEEEeCCCCCCCCCCCcccccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCC
Confidence 77799863222221111112345555 55543210 012489999999999999999999998 7999999999999
Q ss_pred hhHHHHHHHhhh----------------hhccCCCceEEEEccccc---cCchhhhcCCceEEeeCcCCCCCCHHHHHHH
Q 005021 643 ELFDEQSDAYKE----------------SVLPAAVSARVSIEAGST---FGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 703 (719)
Q Consensus 643 ~pld~~~~~~~~----------------sv~~~~~~~vvvvE~~~~---~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~ 703 (719)
||||++.+.... .++....+.+|++||+.. .-+..++..++.++|+|.|+.+|++++|+++
T Consensus 766 kpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~~gG~~Vtv~D~~~aVae~la~~~p~~~~~LGvD~FG~SGt~~~L~~~ 845 (891)
T PRK09405 766 NELARDGQDVERWNMLHPTEEPRVPYVTQVLKGAEGPVVAATDYMKLFAEQIRAFVPGDYVVLGTDGFGRSDTREALRRF 845 (891)
T ss_pred CHhhHHHHHHHHHhhcCcccccccchhhhhhcccCCcEEEecchHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHHHH
Confidence 999999864211 011111133577777742 1123344457788999999999999999999
Q ss_pred hCCCHHHHHHHHHHhC
Q 005021 704 FGITAEAVITAAKEVC 719 (719)
Q Consensus 704 ~gl~~e~I~~~i~~~l 719 (719)
||||++.|+++++++|
T Consensus 846 fglda~~Iv~aal~~L 861 (891)
T PRK09405 846 FEVDAEYVVVAALKAL 861 (891)
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999998764
No 20
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=1.9e-71 Score=637.23 Aligned_cols=613 Identities=22% Similarity=0.246 Sum_probs=478.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~------~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
+.+.++.+++++.||+++++|+.+++ +||+|+++|++||+.+||+++||.+| ++.+|| +|+|+||.+|++
T Consensus 69 pgd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~---~~~~rD-~VlSKGHasp~l 144 (885)
T TIGR00759 69 PGDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHS---EGGGGD-LVFFQGHAAPGI 144 (885)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCC---CCCCCC-EEEECCcHHHHH
Confidence 55777888889999999999999999 99999999999999999999999654 456899 599999999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhc--CCCCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~--~~~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
|+.+++.|++ +.++|++|||. ++.++|||++...| +++++||++|+|+++|+|+|++.|++..+++. +..++
T Consensus 145 YA~L~l~G~l--s~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~---~~~~~ 219 (885)
T TIGR00759 145 YARAFLEGRL--TEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLK---DTGDQ 219 (885)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccC---CCCCc
Confidence 9999999996 99999999995 66677999986666 59999999999999999999999998876532 23689
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh--cchhHHHHHhccCceEEEE----------
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEGLGWHVIWV---------- 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~--~~~~~~~~~~a~G~~~~~v---------- 300 (719)
+|||++||||++||++|||+.+|++++|+|||+|||+|++++|+++... ..+++.++|+++||+|++|
T Consensus 220 rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf 299 (885)
T TIGR00759 220 KVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALL 299 (885)
T ss_pred eEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhh
Confidence 9999999999999999999999999999999999999999999999742 3689999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 300 ~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~~gr 379 (885)
T TIGR00759 300 ARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGQ 379 (885)
T ss_pred cCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhCCCC
Confidence
Q ss_pred ------eeeecCCCc-cccccccccC-CCCCHHHHHHHHHHcCCCCC-------CCCCcHHHHHHHHHHhhcchhHHHHH
Q 005021 301 ------TTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLEAEW 365 (719)
Q Consensus 301 ------~t~~g~g~~-~~~~~~~~h~-~~l~~~~~~~~~~~l~~~~~-------~~~~~~~v~~~~~~~~~~g~~~~~~~ 365 (719)
+|+||+|.+ ..++...+|+ .+++.++++.+++.+++|.. |+..|++- .. .-.+.++.
T Consensus 380 PTvIlA~TvKG~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~-------s~-e~~y~~~r 451 (885)
T TIGR00759 380 PTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEG-------SP-EVRYLLAR 451 (885)
T ss_pred CEEEEEeeeecCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCC-------CH-HHHHHHHH
Confidence 799999987 6677889997 58899999999999998654 34333210 00 01122223
Q ss_pred HHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCCC--CCCcchHHHHHHHHHHHHHhhC---CceEEEecCCCCCc
Q 005021 366 NAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTP--ESPAEATRNLSQTCLNALAKTL---PGLLGGSADLASSN 440 (719)
Q Consensus 366 ~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~--~~~~~s~r~a~~~~L~~l~~~d---p~iv~~saDl~~s~ 440 (719)
.+.+.+|.+........+ ..|. . ..+..+.+ +....+|..+|++.|..|++.- ++||-+.+|++.+.
T Consensus 452 r~~Lgg~~p~R~~~~~~l------~vP~-l-~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartf 523 (885)
T TIGR00759 452 RQALGGYLPARRTFAEHL------TVPA-L-EFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTF 523 (885)
T ss_pred HHHhCCCCCCcCCCCCCC------CCCC-c-hhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccC
Confidence 333444432111111000 0121 0 00001111 1245889999999999999752 46999999987554
Q ss_pred ccc--ccccccCcc-----------------cCCCCCccccccccchHHH--HHHHHH--hcCCCCccEEEehhhh-HHh
Q 005021 441 MTL--LKMFGDFQK-----------------DTPEERNVRFGVREHGMGA--ICNGIA--LHSPGLIPYCATFFVF-TDY 496 (719)
Q Consensus 441 ~~~--~~g~~~f~~-----------------~~~p~R~~d~GIaE~~~vg--~AaGlA--~~G~~~~Pv~~~y~~F-~~r 496 (719)
+.. ++.++-|.. +.--+|.++.||+|.++++ +|+|.| .+|.+++||...|+.| .||
T Consensus 524 gm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR 603 (885)
T TIGR00759 524 GMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQR 603 (885)
T ss_pred ChHHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccc
Confidence 321 122111211 1224799999999999998 467764 5787899999999999 999
Q ss_pred HHHHHHHHhhhcCCEEEEEecCCC-ccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEE
Q 005021 497 MRAAIRISALCEAGVIYVMTHDSI-GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSIL 572 (719)
Q Consensus 497 a~dqir~~a~~~~pV~~v~~~~g~-g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~i 572 (719)
..|.+...|.|...-.++++.+|. ++...|-.||...-..+-..+||+.-|-|+.+.|++.++...+++ ....+|.
T Consensus 604 ~gD~~waa~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~y 683 (885)
T TIGR00759 604 IGDLCWAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFY 683 (885)
T ss_pred hHHHHHHHhhhcCCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 999999999999999999988888 466678899988777788999999999999999999999988864 2457888
Q ss_pred EEcC--CCCCC--CCCCCccccccccEEEecCCCCC-CCCEEEEEeCHhHHHHHHHHHHHHhC-CCcEEEEecCChhhHH
Q 005021 573 ALSR--QKLPH--LAGTSIDGVEKGAYIISDNSSGN-KPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFD 646 (719)
Q Consensus 573 rl~r--~~~~~--~~~~~~~~~~~G~~~i~~~~~~~-g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~l~pld 646 (719)
+++- .++++ .++...+.+.+|.|++.+....+ +++|.|+++|+.+.+|++||++|+++ |+.++|++++|..-|.
T Consensus 684 ylt~~ne~~~qp~~p~~~~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~ 763 (885)
T TIGR00759 684 YVTVMNENYVQPPMPEGAEEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELA 763 (885)
T ss_pred EEEecCCCCCCCCCCcchHHhHHhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHH
Confidence 8876 33322 22222456889999987642111 35899999999999999999999886 9999999999999998
Q ss_pred HHHH--Hhhhhh--------------ccCCCceEEEEccc---cccCchhhhcCCceEEeeCcCCCCCCHHHHHHHhCCC
Q 005021 647 EQSD--AYKESV--------------LPAAVSARVSIEAG---STFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 707 (719)
Q Consensus 647 ~~~~--~~~~sv--------------~~~~~~~vvvvE~~---~~~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~ 707 (719)
++.. +..+.+ +....+-+|++-|+ ....+..+++.+...+|.|.|+.|++++.|+++|++|
T Consensus 764 Rd~~~~eR~n~lhP~~~~r~~~v~~~L~~~~gP~va~tDy~~~~~~qir~~vp~~~~~LGtDgFGrSdtr~~lr~~fevD 843 (885)
T TIGR00759 764 RDGHDVERWNLLHPTETPRVSYVAQVLNEADAPVIASTDYVRAFAEQIRPYVPRKYVTLGTDGFGRSDTRENLRHFFEVD 843 (885)
T ss_pred HhHHHHHHHHhcCCCCCccccHHHHHhccCCCCEEEEccchhhhHHHHhhhcCCCceEecCCCCCCCCCHHHHHHHcCCC
Confidence 8843 211111 22222235888887 3456788888788899999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 005021 708 AEAVITAAKEVC 719 (719)
Q Consensus 708 ~e~I~~~i~~~l 719 (719)
++.|+.++.+.|
T Consensus 844 a~~IV~AAL~aL 855 (885)
T TIGR00759 844 AKSVVLAALYAL 855 (885)
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 21
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=7.3e-68 Score=566.38 Aligned_cols=303 Identities=54% Similarity=0.894 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCC
Q 005021 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (719)
Q Consensus 89 ~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~ 168 (719)
+++|++||.++++|+.++++||+|++||++||+++||..+||+||+||+|++|||||+|+||++|++|+++++.|+ +++
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~-~~~ 80 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGY-DLS 80 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTS-SS-
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcC-CCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999 359
Q ss_pred hhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHH
Q 005021 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (719)
Q Consensus 169 ~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (719)
.++|++||+.+|.++|||+...+|||+++||+|||||+.|+|||+|.|+++.+||+++++..+++|||++||||++||++
T Consensus 81 ~~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~ 160 (332)
T PF00456_consen 81 EEDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSV 160 (332)
T ss_dssp HHHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHH
T ss_pred HHHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhh
Confidence 99999999999999999998789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE----------------------------
Q 005021 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV---------------------------- 300 (719)
Q Consensus 249 ~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v---------------------------- 300 (719)
|||+.+|++++|+|||+|||+|++++|++++....+++.++|++|||+|++|
T Consensus 161 ~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~ 240 (332)
T PF00456_consen 161 WEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVFSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIA 240 (332)
T ss_dssp HHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTHHSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEecCCcccCCCcccccchHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeec
Confidence 9999999999999999999999999999998777889999999999999997
Q ss_pred eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhh
Q 005021 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 380 (719)
Q Consensus 301 ~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 380 (719)
+|++|+|.++++++..+|+.++++++++.++++++++.++|.+|+|++.+|++...+|...+++|++++.+|++++|+.+
T Consensus 241 ~TvkG~G~~~~e~~~~~Hg~~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~g~~~~~~W~~~~~~y~~~~P~~a 320 (332)
T PF00456_consen 241 RTVKGKGVPFMEGTAKWHGSPLTEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAEGAKAEAEWKELFAAYKKKYPEEA 320 (332)
T ss_dssp EE-TTTTSTTTTTSGGGTSS--HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ceEEecCchhhcccchhhccCCcHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHCHHHH
Confidence 89999999999999999999999999999999999998999999999999998888899999999999999999999999
Q ss_pred hhhhhhhcCCCC
Q 005021 381 AEFKSISSGQLP 392 (719)
Q Consensus 381 ~~~~~~~~g~~p 392 (719)
.++.+.++|++|
T Consensus 321 ~el~~~l~g~lP 332 (332)
T PF00456_consen 321 QELERRLNGELP 332 (332)
T ss_dssp HHHHHHHTT---
T ss_pred HHHHHHHcCCCC
Confidence 999998888776
No 22
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-65 Score=519.67 Aligned_cols=295 Identities=29% Similarity=0.409 Sum_probs=269.0
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
..++|+++++.|.++++++++||++++|+.+|+.+ ..|.+ +||+||||+||+||+|+|+|+|||+.|+ +||+
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~-----~~f~~-~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk--~Pfv 77 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKT-----GYFAK-EFPDRFFNVGIAEQDMVGTAAGLALAGK--KPFV 77 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccch-----hHHHH-hCchhheecchHHHHHHHHHHHHHhcCC--Ccee
Confidence 36789999999999999999999999999888653 45866 8999999999999999999999999995 9999
Q ss_pred EehhhhHH-hHHHHHHHH-hhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc
Q 005021 488 ATFFVFTD-YMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN 565 (719)
Q Consensus 488 ~~y~~F~~-ra~dqir~~-a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~ 565 (719)
++|+.|+. |+|||||+. ||+++||+++++|.|+++|+||+|||++||+++||.+||++|+.|+|+.+++.+++++.+
T Consensus 78 ~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~- 156 (312)
T COG3958 78 STFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD- 156 (312)
T ss_pred echHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-
Confidence 99999999 999999996 999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhH
Q 005021 566 RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 645 (719)
Q Consensus 566 ~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pl 645 (719)
.+||+|+|+.|...|.+..+..+.|++|++.++++ |.|+|||++|.||++|++||++|+++||+++|||+.|+||+
T Consensus 157 ~~GP~Y~Rl~R~~~p~~~~~~~~~F~iGka~vLrd----G~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPi 232 (312)
T COG3958 157 YKGPVYMRLGRGKVPVVVDEGGYTFEIGKANVLRD----GSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPI 232 (312)
T ss_pred cCCCEEEEecCCCCCceecCCCceEeccceeEeec----CCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCC
Confidence 79999999999998887665557799999999997 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCceEEEEccccccC-chhhh--------cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHH
Q 005021 646 DEQSDAYKESVLPAAVSARVSIEAGSTFG-WEKIV--------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAA 715 (719)
Q Consensus 646 d~~~~~~~~sv~~~~~~~vvvvE~~~~~G-~~~~~--------~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i 715 (719)
|++++. +...+++ .+||+|+|+..| +|+-+ ..++.++|+ |.|+.+|+.++|+++||||+++|++++
T Consensus 233 D~~~i~--~~A~~t~--~IvT~EeHsi~GGlGsaVAEvlse~~p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v 308 (312)
T COG3958 233 DEQAIL--KAARETG--RIVTAEEHSIIGGLGSAVAEVLSENGPTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARV 308 (312)
T ss_pred CHHHHH--HHHhhcC--cEEEEecceeecchhHHHHHHHHhcCCcceEEecCCchhccccchHHHHHHhCCCHHHHHHHH
Confidence 999875 2233443 479999999865 66532 136789999 899999999999999999999999999
Q ss_pred HHhC
Q 005021 716 KEVC 719 (719)
Q Consensus 716 ~~~l 719 (719)
++++
T Consensus 309 ~~~~ 312 (312)
T COG3958 309 LELL 312 (312)
T ss_pred HhhC
Confidence 9875
No 23
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=9.2e-59 Score=534.20 Aligned_cols=572 Identities=21% Similarity=0.286 Sum_probs=424.5
Q ss_pred HHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCc-EEEeCCCCchHHHHHHHHhC-----CCCCChhH--Hh
Q 005021 102 AVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHLAG-----YDSVQEDD--LK 173 (719)
Q Consensus 102 ~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr-~Ils~GH~~~~~Ya~l~l~G-----~~~~~~~~--l~ 173 (719)
-+...-.||+|++.|..-+.+.|-+..=++ +.|+ +|++.||++|++|+.++|.| |.+++.++ |.
T Consensus 43 ~~K~r~~GHwGt~pgln~vyahln~li~~~--------~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~ 114 (785)
T PRK05261 43 HVKPRLLGHWGTTPGLNFIYAHLNRLIRKY--------DLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMA 114 (785)
T ss_pred HCCcccCCCCCCcHHHHHHHHHHHHHHhhc--------CCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHH
Confidence 344456999999999887766666553333 3465 79999999999999999999 54345555 87
Q ss_pred -hhhhcCCC--CCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH---
Q 005021 174 -NFRQWGSK--TPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI--- 247 (719)
Q Consensus 174 -~~r~~~~~--~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~--- 247 (719)
.|||+++. ++|||++ ++||++.++|+||+|++.|+|+|++. .+.+|||++||||+++|.
T Consensus 115 ~lfrqfs~pgg~~sH~~~-~tPGi~~~~G~LG~gls~A~G~Al~~--------------~d~iv~~~vGDGE~EeG~lAa 179 (785)
T PRK05261 115 RLFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAAFDN--------------PDLIVACVVGDGEAETGPLAT 179 (785)
T ss_pred HHHHhccCCCCcCCCCCC-CCCCeeeCCCchhhHHHHHHHHHHcC--------------CCCEEEEEECcCchhhhhhHH
Confidence 68999866 8899995 89999999999999999999999642 267999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEEE-------------------------
Q 005021 248 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV------------------------- 300 (719)
Q Consensus 248 ~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~v------------------------- 300 (719)
.|++.++++..+++||+.|+++|+++|++++.. ...+++.++|++|||+++.|
T Consensus 180 ~W~~~~~~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~ 259 (785)
T PRK05261 180 SWHSNKFLNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRA 259 (785)
T ss_pred HhhhhhhcccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999974 34588999999999999988
Q ss_pred ---------------------eeeecCCCcc------ccccccccCCCCCHH-HHHHHHHHc-CC--CCCC---CCCcHH
Q 005021 301 ---------------------TTTIGFGSPN------KANSYSVHGSALGAK-EVDATRKNL-GW--PYEP---FHVPED 346 (719)
Q Consensus 301 ---------------------~t~~g~g~~~------~~~~~~~h~~~l~~~-~~~~~~~~l-~~--~~~~---~~~~~~ 346 (719)
+|.||+|.+. .+++...|+.|++.+ +....++.| +| +++| |+.+.+
T Consensus 260 iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eGs~raHqvPL~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~ 339 (785)
T PRK05261 260 IQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEGSWRAHQVPLANVRDNPEHLDLLEDWLRSYRPEELFDEDGR 339 (785)
T ss_pred HHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccCCCchhhcCCCCCcccCHHHHHHHHHHhhcCChhhhcCCCCc
Confidence 6789999664 466778999998764 555566666 55 5566 888887
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccc-cCCCCCCC-CCcchHHHHHHHHHHHHHh
Q 005021 347 VKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEK-ALPTYTPE-SPAEATRNLSQTCLNALAK 424 (719)
Q Consensus 347 v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~-~~~~~~~~-~~~~s~r~a~~~~L~~l~~ 424 (719)
++..+.....+|... . ..+|....... ...-.+| +|.. ..+....+ ....+||. +++.|.++++
T Consensus 340 l~~~~~~l~p~g~~r-------~----~~~P~ang~~~-~~~l~lp-~~~~~~~~~~~~g~~~~~atr~-~g~~l~~v~~ 405 (785)
T PRK05261 340 LKPELAALAPKGDRR-------M----GANPHANGGLL-LRDLRLP-DFRDYAVPVGKPGAVMAEATRV-LGKYLRDVIK 405 (785)
T ss_pred hhHHHHHhccCchhh-------h----cCCchhcCCcC-ccccCCC-chHhhcccccCCCccccccHHH-HHHHHHHHHH
Confidence 887777655555411 1 12331110000 0000011 2211 00111111 23467888 9999999999
Q ss_pred hCCc-eEEEecCCCCCcccc--cccc-ccCcc--------cCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhh
Q 005021 425 TLPG-LLGGSADLASSNMTL--LKMF-GDFQK--------DTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFV 492 (719)
Q Consensus 425 ~dp~-iv~~saDl~~s~~~~--~~g~-~~f~~--------~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~ 492 (719)
.+|+ ++++++|+..|+.+. +..+ ..|.. ...-+|+++ ||+|+.|.|++.|+++.| .++++.+|..
T Consensus 406 ~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~Gy~LtG--~~~~~~sYea 482 (785)
T PRK05261 406 LNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEGYLLTG--RHGFFSSYEA 482 (785)
T ss_pred hCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHHHHhcC--CCcceecHHH
Confidence 9999 999999998887642 1100 01111 123489999 999999999999999988 5999999999
Q ss_pred hH---HhHHHHH----HHHh---h-hcCC-EEEEEecCCCccCCCCCCCCC---hhhhhHHcCCCCeEEEeeCCHHHHHH
Q 005021 493 FT---DYMRAAI----RISA---L-CEAG-VIYVMTHDSIGLGEDGPTHQP---IEHLASFRAMPNILMLRPADGNETAG 557 (719)
Q Consensus 493 F~---~ra~dqi----r~~a---~-~~~p-V~~v~~~~g~g~g~dG~THq~---~edia~lr~iPnl~V~~P~d~~e~~~ 557 (719)
|+ ++|+.|+ |... . ..++ +.++.|++....|+||+|||. ++.++.+|. |+++||.|+|++|+..
T Consensus 483 F~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~~~rV~rPaDaNe~la 561 (785)
T PRK05261 483 FIHIVDSMFNQHAKWLKVAREIPWRKPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-DVIRVYLPPDANTLLA 561 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC-CcceEEeCCCHHHHHH
Confidence 99 8999997 6431 1 1122 347888999999999999999 999999999 9999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCC--CCCCCCEEEEEeCHhHHH-HHHHHHHHHhC--
Q 005021 558 AYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNS--SGNKPDVILIGTGSELEI-AAKAAEELRKG-- 630 (719)
Q Consensus 558 ~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~--~~~g~dvtIva~G~~v~~-al~Aa~~L~~~-- 630 (719)
+++.|+++.++|++|.++|+++|++...+ ...+..|+|++...+ .++.+||+|+++|+++.. |++|+++|+++
T Consensus 562 a~~~al~s~~~p~~IvlsRQ~lp~~~~~~~a~~~~~kGayi~~~a~~~~~~~pDvvL~atGsev~leAlaAa~~L~~~~p 641 (785)
T PRK05261 562 VADHCLRSRNYINVIVAGKQPRPQWLSMDEARKHCTKGLGIWDWASNDDGEEPDVVLACAGDVPTLETLAAADLLREHFP 641 (785)
T ss_pred HHHHHHHhCCCCEEEEEeCCCCcccCChHHHHHhccCceEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCC
Confidence 99999988899999999999999865432 356889999987321 112479999999999987 99999999999
Q ss_pred CCcEEEEecCChhhHHHHHHHhh---------hhhccCCCceEEEEccccccCchhhh----c-CCceEEeeCcCCCCCC
Q 005021 631 GKAVRVVSFVSWELFDEQSDAYK---------ESVLPAAVSARVSIEAGSTFGWEKIV----G-SKGKAIGIDRFGASAP 696 (719)
Q Consensus 631 Gi~v~VId~~~l~pld~~~~~~~---------~sv~~~~~~~vvvvE~~~~~G~~~~~----~-~~~~~ig~d~f~~~g~ 696 (719)
|++++||++ +++|+.+...|. +.++...+.+++...-+ ..-+-+.+ . .+....|..+=+..-+
T Consensus 642 gikvRVVSv--~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~hgy-p~~i~~l~~~r~~~~~~~v~gy~e~g~ttt 718 (785)
T PRK05261 642 DLKIRVVNV--VDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAFHGY-PWLIHRLTYRRTNHHNFHVRGYKEEGTTTT 718 (785)
T ss_pred CCCEEEEEe--chhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEeCCC-HHHHHHHhccCCCCCccEEEEEecCCCCCC
Confidence 999999999 478877753221 23344444422221111 11111111 1 2345567755566667
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q 005021 697 AGKIYKEFGITAEAVITAAKE 717 (719)
Q Consensus 697 ~~el~~~~gl~~e~I~~~i~~ 717 (719)
+-+++-..++|.-.++..+.+
T Consensus 719 p~dm~~~N~~~r~~l~~~a~~ 739 (785)
T PRK05261 719 PFDMVVLNELDRFHLAIDAID 739 (785)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 889999999999998887654
No 24
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-54 Score=424.28 Aligned_cols=204 Identities=43% Similarity=0.679 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
...|.++|.+||+.+++|+..++.||+|++||++||+++||++.|+++|++|.|++|||||||+||++|++|++++..|+
T Consensus 7 ~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~G~ 86 (243)
T COG3959 7 VDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEKGY 86 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHcCC
Confidence 33499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (719)
+ ++|+|.+|++.+|++||||++..+||++++||+||||||+|+|||++.|+++ .+.+|||++||||++
T Consensus 87 ~--p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~----------~~~~VyvilGDGEl~ 154 (243)
T COG3959 87 F--PEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKG----------SPYRVYVILGDGELD 154 (243)
T ss_pred C--CHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcC----------CCceEEEEecCcccc
Confidence 7 9999999999999999999998899999999999999999999999999987 478999999999999
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchh-hhcchhHHHHHhccCceEEEE
Q 005021 245 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 245 eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~-~~~~~~~~~~~~a~G~~~~~v 300 (719)
||++|||++.|++++|+|||.|+|.|+.|+|+.+. ++..+++.++|++|||+|++|
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~ev 211 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEV 211 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEE
Confidence 99999999999999999999999999999999996 466789999999999999997
No 25
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=4.7e-51 Score=447.70 Aligned_cols=614 Identities=23% Similarity=0.265 Sum_probs=456.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~------~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
+-+.++=.++-.-||+.++-||-+++ |||++|..|++.|+.++|.+++| +++... +.|++.+ .||.+|++
T Consensus 72 pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr--~~~~~~-ggDlV~~-qgHaSPg~ 147 (887)
T COG2609 72 PGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFR--AKSEKD-GGDLVFF-QGHASPGI 147 (887)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhc--CcCCCC-CCceEEE-ecCCCchH
Confidence 44455445677889999999887754 99999999999999999999877 332222 5676555 89999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhcCC--CCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQWGS--KTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~~~--~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
||..+|.|+. ++|+|++|||..+ -.+++|++...| .+.|+|+++|-|..+|+-.|.-.||+..|.-+ +..+.
T Consensus 148 yArafLeGRl--seeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~---~~~~~ 222 (887)
T COG2609 148 YARAFLEGRL--TEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLK---DTSDQ 222 (887)
T ss_pred HHHHHHhccc--cHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCc---CCCCC
Confidence 9999999996 9999999998755 233788886654 88999999999999999999999999876322 23689
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEEE----------
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV---------- 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~v---------- 300 (719)
+|||++|||||.|+.+.+|+..|+..+|+|+|||+|.|.+++|+++.. -...++...|++.||+|++|
T Consensus 223 ~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll 302 (887)
T COG2609 223 KVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELL 302 (887)
T ss_pred eEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHh
Confidence 999999999999999999999999999999999999999999999953 24567899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 303 ~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~kg~ 382 (887)
T COG2609 303 AKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEHKGR 382 (887)
T ss_pred cccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcCCCC
Confidence
Q ss_pred ------eeeecCCCc-cccccccccCC-CCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcch---hHHHHHHHHH
Q 005021 301 ------TTTIGFGSP-NKANSYSVHGS-ALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGA---TLEAEWNAKF 369 (719)
Q Consensus 301 ------~t~~g~g~~-~~~~~~~~h~~-~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~---~~~~~~~~~~ 369 (719)
+|+||+|.. ..+.....|.. .++.+.++.+++.+++|...-++.+ + ..+ +...+. .+.+...+++
T Consensus 383 PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~-l-py~--~~g~~s~E~~yl~~rr~al 458 (887)
T COG2609 383 PTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEE-L-PYY--HFGEDSPEYKYLHARRAAL 458 (887)
T ss_pred ceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhc-C-CcC--CCCCCcHHHHHHHHHHHhc
Confidence 789999965 33445566765 6788899999999988632211100 0 000 001110 1222223333
Q ss_pred hhhhhcCchhhhhhhhhhcCCCCCcccccCCCC----CCCCCcchHHHHHHHHHHHHHhhC---CceEEEecCCCCCccc
Q 005021 370 AEYEKKYPEEAAEFKSISSGQLPAGWEKALPTY----TPESPAEATRNLSQTCLNALAKTL---PGLLGGSADLASSNMT 442 (719)
Q Consensus 370 ~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~----~~~~~~~s~r~a~~~~L~~l~~~d---p~iv~~saDl~~s~~~ 442 (719)
..|.+.. ... ++..+|-. .+.+| .......+|..+|...|.+++++. ++||-+.+|.+.+.+.
T Consensus 459 ~g~~p~r---r~~----~t~~l~vP---~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgm 528 (887)
T COG2609 459 GGYLPAR---RPK----FTPALPVP---SLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGM 528 (887)
T ss_pred CCCCchh---ccc----CCCCccCC---cHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccc
Confidence 3332211 000 11111100 00011 111224889999999999999843 4799999998754332
Q ss_pred c--cccccc-------Ccc----------cCCCCCccccccccchHHH--HHHHHH--hcCCCCccEEEehhhh-HHhHH
Q 005021 443 L--LKMFGD-------FQK----------DTPEERNVRFGVREHGMGA--ICNGIA--LHSPGLIPYCATFFVF-TDYMR 498 (719)
Q Consensus 443 ~--~~g~~~-------f~~----------~~~p~R~~d~GIaE~~~vg--~AaGlA--~~G~~~~Pv~~~y~~F-~~ra~ 498 (719)
. +..++- |.. +.-.++.++.||+|.++++ +|+|.+ .+|.+|+||..-|+.| +||.-
T Consensus 529 eg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRig 608 (887)
T COG2609 529 EGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIG 608 (887)
T ss_pred hhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHH
Confidence 1 111111 211 1224799999999999998 477775 5687899999999999 89999
Q ss_pred HHHHHHhhhcCC-EEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcC------CCcEE
Q 005021 499 AAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR------KRPSI 571 (719)
Q Consensus 499 dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~------~~P~~ 571 (719)
|.+..+|.|... .++.+|.+|.++-..|-.|+...-.-+-..+||+.-|-|+.+.|++-++...+++. +.-.|
T Consensus 609 D~~waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yY 688 (887)
T COG2609 609 DLLWAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYY 688 (887)
T ss_pred HHHHHHHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEE
Confidence 999999999988 77777877777766788898766545667899999999999999999999988653 33478
Q ss_pred EEEcCCCCCC--CCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHh-CCCcEEEEecCChhhHHHH
Q 005021 572 LALSRQKLPH--LAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRK-GGKAVRVVSFVSWELFDEQ 648 (719)
Q Consensus 572 irl~r~~~~~--~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~-~Gi~v~VId~~~l~pld~~ 648 (719)
|++...++++ .+....+.+.+|.|.+......++..+.|++.|..+.+|++|++.|++ .|+.+.|.+++|..-|.++
T Consensus 689 lt~~ne~~~qPamp~gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rd 768 (887)
T COG2609 689 ITLSNENYPQPAMPEGAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARD 768 (887)
T ss_pred EEeccCcCCCCCCCCcchhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcc
Confidence 8887766654 233334678899999877532125789999999999999999999987 6999999999999888765
Q ss_pred H----------------HHhhhhhccCCCceEEEEccccccC---chhhhcCCceEEeeCcCCCCCCHHHHHHHhCCCHH
Q 005021 649 S----------------DAYKESVLPAAVSARVSIEAGSTFG---WEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAE 709 (719)
Q Consensus 649 ~----------------~~~~~sv~~~~~~~vvvvE~~~~~G---~~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~~e 709 (719)
. +.|...+++.+.. +|++-|..... +..+++.+...+|.|.|+.|++++.|+++|.+|++
T Consensus 769 g~a~~R~n~lhP~~~~~v~yv~~~L~~~~p-~Va~tDy~~~~a~qir~~vp~~y~vLGtdgFGrSdsr~~Lr~~fevDa~ 847 (887)
T COG2609 769 GQAAERWNLLHPTETPRVPYVAQVLNADGP-VVAVTDYMKLFAEQIRAVVPQRYRVLGTDGFGRSDSRENLRRFFEVDAY 847 (887)
T ss_pred hHHHHHHHhcCCCCCCCchHHHHHhccCCC-eEEechhhHhHHHHHhcccCCeeEEeccCCCCccCcHHHHHHHhccchH
Confidence 3 2334445554444 47887776543 45667666778999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 005021 710 AVITAAKEVC 719 (719)
Q Consensus 710 ~I~~~i~~~l 719 (719)
.|+-++...|
T Consensus 848 ~vv~Aal~~L 857 (887)
T COG2609 848 YVVVAALSAL 857 (887)
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 26
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=4.9e-52 Score=446.16 Aligned_cols=290 Identities=13% Similarity=0.105 Sum_probs=239.3
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCC-CccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-RNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~-R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
.++|++++++|.+++++||+++++++|++.++.. ...+++|++ +||+ ||||+||+||+|||+|+|||+.| ++||+
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~-~~~~~~f~~-~fp~~R~~n~gIaEq~~vg~AaGlA~~G--~~pvv 79 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGS-YKVTKGLHE-KYGDLRVLDTPIAENSFTGMAIGAAMTG--LRPIV 79 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCc-hhHHHHHHH-HCCCccEeeccccHHHHHHHHHHHHHCC--CEEEE
Confidence 5789999999999999999999999999643221 122456876 8999 99999999999999999999999 69999
Q ss_pred E-ehhhhHHhHHHHHHHH-hhh--------cCCEEEEEecCCCccCCCCCCC-CChhhhhHHcCCCCeEEEeeCCHHHHH
Q 005021 488 A-TFFVFTDYMRAAIRIS-ALC--------EAGVIYVMTHDSIGLGEDGPTH-QPIEHLASFRAMPNILMLRPADGNETA 556 (719)
Q Consensus 488 ~-~y~~F~~ra~dqir~~-a~~--------~~pV~~v~~~~g~g~g~dG~TH-q~~edia~lr~iPnl~V~~P~d~~e~~ 556 (719)
+ +|+.|++|+||||++. |++ ++||+++. .|..++.+|+|| |++| ++||+||||+|++|+|+.|++
T Consensus 80 ~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~--~g~~~~~~G~tHs~~~e--a~~~~iPgl~V~~Psd~~d~~ 155 (327)
T CHL00144 80 EGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRG--PGGVGRQLGAEHSQRLE--SYFQSVPGLQIVACSTPYNAK 155 (327)
T ss_pred EeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEe--cCCCCCCCCccccccHH--HHHhcCCCCEEEEeCCHHHHH
Confidence 7 6778899999999875 776 56666664 666566799999 6664 999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCC---CCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc
Q 005021 557 GAYKVAVANRKRPSILALSRQKL---PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 633 (719)
Q Consensus 557 ~~l~~a~~~~~~P~~irl~r~~~---~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 633 (719)
.+++++++ .++|+|||++|.-. +.++.+ .+.+++|++.++++ |.|+|||+||.|+++|++|++.|+++||+
T Consensus 156 ~~l~~a~~-~~~Pv~ire~~~l~~~~~~v~~~-~~~~~~Gk~~v~~~----G~ditiia~G~~v~~al~Aa~~L~~~Gi~ 229 (327)
T CHL00144 156 GLLKSAIR-SNNPVIFFEHVLLYNLKEEIPDN-EYLLPLEKAEVVRP----GNDITILTYSRMRHHVLQAVKVLVEKGYD 229 (327)
T ss_pred HHHHHHHh-CCCcEEEEEcHHhcCCCCCCCCC-CccccCCeeEEEEc----CCCEEEEEccHHHHHHHHHHHHHHhcCCC
Confidence 99999996 68999998433222 223332 34678999999987 79999999999999999999999999999
Q ss_pred EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhh------------hcCCceEEee-CcCCC-CCCHH
Q 005021 634 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKI------------VGSKGKAIGI-DRFGA-SAPAG 698 (719)
Q Consensus 634 v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~------------~~~~~~~ig~-d~f~~-~g~~~ 698 (719)
++|||++|++|||++++. +++.+++. +||+||+... |+++. +..++.++|+ |.|++ +|+.+
T Consensus 230 ~~VId~~~ikPlD~~~i~--~~~~~t~~--vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~ 305 (327)
T CHL00144 230 PEIIDLISLKPLDLGTIS--KSVKKTHK--VLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLE 305 (327)
T ss_pred EEEEecCcCCCCCHHHHH--HHHHhhCc--EEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHH
Confidence 999999999999999875 56666653 6999999875 56542 2346788999 78887 56555
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 005021 699 KIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 699 el~~~~gl~~e~I~~~i~~~l 719 (719)
+ .+|||+++|+++|++++
T Consensus 306 ~---~~gl~~~~I~~~i~~~l 323 (327)
T CHL00144 306 E---ATVIQPAQIIEAVEQII 323 (327)
T ss_pred H---HhCCCHHHHHHHHHHHH
Confidence 4 45999999999998864
No 27
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=5.2e-51 Score=453.96 Aligned_cols=290 Identities=19% Similarity=0.219 Sum_probs=245.3
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 486 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv 486 (719)
.+++|++++++|.+++++||+++++++|++.+... ++-+..|.+ +| |+||||+||+||+|+|+|+|||+.| ++||
T Consensus 141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga-~~~t~~l~~-~fgp~R~id~gIaEq~~vg~AaGlA~~G--~rPi 216 (464)
T PRK11892 141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGA-YKVTQGLLQ-EFGARRVIDTPITEHGFAGIGVGAAFAG--LKPI 216 (464)
T ss_pred chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCc-cccchHHHH-HhCccceeecCccHHHHHHHHHHHHhCC--CEEE
Confidence 46789999999999999999999999999644321 111244655 79 9999999999999999999999999 6999
Q ss_pred EEe-hhhhHHhHHHHHHHH-h--------hhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHH
Q 005021 487 CAT-FFVFTDYMRAAIRIS-A--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 556 (719)
Q Consensus 487 ~~~-y~~F~~ra~dqir~~-a--------~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~ 556 (719)
+++ +++|++|+||||++. | ++++||+|++.+.+. .+ .|+ ||+++|+++||+||||+|++|+|+.|++
T Consensus 217 v~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~-~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~ 293 (464)
T PRK11892 217 VEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAA-AR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAK 293 (464)
T ss_pred EEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCC-CC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHH
Confidence 976 578899999999874 7 899999999854433 23 777 9999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEE-----EEcCC-CCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC
Q 005021 557 GAYKVAVANRKRPSIL-----ALSRQ-KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG 630 (719)
Q Consensus 557 ~~l~~a~~~~~~P~~i-----rl~r~-~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~ 630 (719)
++|+++++ .++|+|| ||+|+ .+|.+ +.+.+++|+++++++ |.|+|||++|.+++.|++|+++|+++
T Consensus 294 ~ll~~ai~-~~~Pv~ile~~~ry~~~~~vp~~---~~~~~~~Gka~v~r~----G~DvtIva~G~~v~~Al~Aa~~L~~~ 365 (464)
T PRK11892 294 GLLKAAIR-DPNPVIFLENEILYGQSFDVPKL---DDFVLPIGKARIHRE----GKDVTIVSFSIGMTYALKAAEELAKE 365 (464)
T ss_pred HHHHHHhh-CCCcEEEEechhhcCCCCCCCCc---CCccccCceEEEEEc----CCCEEEEEccHHHHHHHHHHHHHHhc
Confidence 99999996 6899999 67775 34433 124578999999987 79999999999999999999999999
Q ss_pred CCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhh------------hcCCceEEee-CcCCCCCC
Q 005021 631 GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKI------------VGSKGKAIGI-DRFGASAP 696 (719)
Q Consensus 631 Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~------------~~~~~~~ig~-d~f~~~g~ 696 (719)
||+++|||++|++|||.+++. +++.+++. +||+||++.. |+++. +..++.++|+ |.|.+
T Consensus 366 GI~~~VIdl~tlkPlD~~~i~--~sv~kt~~--vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~--- 438 (464)
T PRK11892 366 GIDAEVIDLRTIRPMDTETIV--ESVKKTNR--LVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP--- 438 (464)
T ss_pred CCCEEEEECCCCCcCCHHHHH--HHHHhcCe--EEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---
Confidence 999999999999999999875 57777763 6999999875 46542 2346788999 77764
Q ss_pred HHHHHHHhCC-CHHHHHHHHHHhC
Q 005021 697 AGKIYKEFGI-TAEAVITAAKEVC 719 (719)
Q Consensus 697 ~~el~~~~gl-~~e~I~~~i~~~l 719 (719)
++.++++++| +++.|+++|++++
T Consensus 439 ~~~~le~~~l~~~~~Iv~av~~~~ 462 (464)
T PRK11892 439 YAANLEKLALPSVAEVVEAVKAVC 462 (464)
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHh
Confidence 6789999998 9999999999864
No 28
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=5.1e-51 Score=439.01 Aligned_cols=293 Identities=18% Similarity=0.213 Sum_probs=241.1
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
.++|++++++|.+++++||+++++++|++.++.. +.-+..|++ +| |+||||+|||||+|||+|+|||+.| ++||+
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~-~~~~~~~~~-~fgp~R~~d~gIaE~~~vg~AaGlA~~G--~~Piv 79 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGA-YKVTQGLLE-QFGPKRVIDTPITEHGFAGLAVGAAFAG--LRPIV 79 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCc-chhhHHHHH-HhCCCceeecchhHHHHHHHHHHHHHcC--CeeEE
Confidence 5789999999999999999999999999644321 111245766 89 9999999999999999999999999 69999
Q ss_pred Eehh-hhHHhHHHHHHH-Hhhhc------CCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHH
Q 005021 488 ATFF-VFTDYMRAAIRI-SALCE------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAY 559 (719)
Q Consensus 488 ~~y~-~F~~ra~dqir~-~a~~~------~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l 559 (719)
++|+ +|++|+||||++ +|+++ +||.+++.+++..++.+|+|||...+ ++||+||||+|++|+|+.|++.+|
T Consensus 80 ~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l 158 (327)
T PRK09212 80 EFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLL 158 (327)
T ss_pred EeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHH
Confidence 9887 789999999876 48874 45444444577668899999944444 999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEEcCCCCC---CCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEE
Q 005021 560 KVAVANRKRPSILALSRQKLP---HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 636 (719)
Q Consensus 560 ~~a~~~~~~P~~irl~r~~~~---~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~V 636 (719)
++|++ .++|+|||++|..++ .++. ..+.+++|+++++++ |.|++||+||+++..|++|++.|+++|++++|
T Consensus 159 ~~a~~-~~~Pv~i~~~~~~~~~~~~~~~-~~~~~~~Gk~~vl~~----G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~v 232 (327)
T PRK09212 159 KTAIR-DPNPVIFLENEILYGHSHEVPE-EEESIPIGKAAILRE----GSDVTIVTFSIQVKLALEAAELLEKEGISVEV 232 (327)
T ss_pred HHHHh-CCCcEEEEEchhhcCCCCCCCC-CCccccCCeeEEEEe----CCCEEEEEccHHHHHHHHHHHHHHhcCCcEEE
Confidence 99996 599999987765443 2222 234688999999887 79999999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhh------------hcCCceEEee-CcCCCCCCHHHHHH
Q 005021 637 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKI------------VGSKGKAIGI-DRFGASAPAGKIYK 702 (719)
Q Consensus 637 Id~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~------------~~~~~~~ig~-d~f~~~g~~~el~~ 702 (719)
||+++++|||++.+. +.+.+++ .+|++|++... |+++. ...++.+++. |.|++.| ++++
T Consensus 233 i~~~~l~Pld~~~i~--~~~~~~~--~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~le 305 (327)
T PRK09212 233 IDLRTLRPLDTETII--ESVKKTN--RLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANLE 305 (327)
T ss_pred EEEecCCCCCHHHHH--HHHHhCC--eEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHHH
Confidence 999999999998764 3444444 36999999875 45432 1235678888 7887765 8999
Q ss_pred HhCC-CHHHHHHHHHHhC
Q 005021 703 EFGI-TAEAVITAAKEVC 719 (719)
Q Consensus 703 ~~gl-~~e~I~~~i~~~l 719 (719)
++|| ++++|+++|++++
T Consensus 306 ~~~l~~~~~I~~~i~~~~ 323 (327)
T PRK09212 306 KLALPSEEDIIEAVKKVC 323 (327)
T ss_pred HhcCCCHHHHHHHHHHHH
Confidence 9998 9999999999864
No 29
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=1.2e-50 Score=439.51 Aligned_cols=302 Identities=20% Similarity=0.240 Sum_probs=243.1
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhc
Q 005021 400 PTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 479 (719)
Q Consensus 400 ~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~ 479 (719)
+.|..+..+.++|++++++|.+++++||+++++++|++.++.. +..+..|.++.+|+||||+|||||+|||+|+|||+.
T Consensus 18 ~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~-~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~ 96 (356)
T PLN02683 18 RGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGA-YKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYA 96 (356)
T ss_pred cccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCc-cchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHC
Confidence 3444444567899999999999999999999999998654321 111233545234999999999999999999999999
Q ss_pred CCCCccEEEe-hhhhHHhHHHHHHHH-hhhc--------CCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEee
Q 005021 480 SPGLIPYCAT-FFVFTDYMRAAIRIS-ALCE--------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRP 549 (719)
Q Consensus 480 G~~~~Pv~~~-y~~F~~ra~dqir~~-a~~~--------~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P 549 (719)
| ++||+++ |++|++|+||||++. |+++ +||+|++.+ |.++| +|+|||..+ +++||+||||+|++|
T Consensus 97 G--~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~P 171 (356)
T PLN02683 97 G--LKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAG-VGAQHSQCF-AAWYSSVPGLKVLAP 171 (356)
T ss_pred C--CEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCC-CCCccccCH-HHHHhcCCCCEEEEe
Confidence 9 6999987 578899999999864 8887 999999854 65567 599998887 699999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEcC----CCCCCCCC--CCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHH
Q 005021 550 ADGNETAGAYKVAVANRKRPSILALSR----QKLPHLAG--TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKA 623 (719)
Q Consensus 550 ~d~~e~~~~l~~a~~~~~~P~~irl~r----~~~~~~~~--~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~A 623 (719)
+|+.|++.+++++++ .++|+|||+++ +..|.... ...+.+++|+++++++ |+|++||++|+|+++|++|
T Consensus 172 ad~~e~~~~l~~a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~----G~dvtIia~G~~v~~Al~A 246 (356)
T PLN02683 172 YSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIERE----GKDVTIVAFSKMVGYALKA 246 (356)
T ss_pred CCHHHHHHHHHHHHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEc----CCCEEEEEccHHHHHHHHH
Confidence 999999999999996 68999999643 22221111 1124578899999987 7899999999999999999
Q ss_pred HHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhh------------hcCCceEEee-C
Q 005021 624 AEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKI------------VGSKGKAIGI-D 689 (719)
Q Consensus 624 a~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~------------~~~~~~~ig~-d 689 (719)
++.|+++||+++|||++|++|||++++. +++.+++ .+||+||+... |+|+. ...++.++|+ |
T Consensus 247 a~~L~~~GI~v~VId~~~ikPlD~~~l~--~~~~~t~--~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d 322 (356)
T PLN02683 247 AEILAKEGISAEVINLRSIRPLDRDTIN--ASVRKTN--RLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGAD 322 (356)
T ss_pred HHHHHhcCCCEEEEECCCCCccCHHHHH--HHHhhcC--eEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCC
Confidence 9999999999999999999999999875 4555555 36999999875 56542 1236778999 5
Q ss_pred cCCCCCCHHHHHHHhCC-CHHHHHHHHHHhC
Q 005021 690 RFGASAPAGKIYKEFGI-TAEAVITAAKEVC 719 (719)
Q Consensus 690 ~f~~~g~~~el~~~~gl-~~e~I~~~i~~~l 719 (719)
.+ .+...+++++++ ++++|+++|++++
T Consensus 323 ~~---~p~~~~le~~~~p~~~~i~~a~~~~~ 350 (356)
T PLN02683 323 VP---MPYAANLERLALPQVEDIVRAAKRAC 350 (356)
T ss_pred cC---CCccHHHHHhhCCCHHHHHHHHHHHH
Confidence 54 345567777777 9999999999874
No 30
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=1.7e-50 Score=432.65 Aligned_cols=243 Identities=27% Similarity=0.312 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC------CCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHH
Q 005021 86 ALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALL 159 (719)
Q Consensus 86 ~~l~~la~~iR~~~~~~v~~~~~------GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l 159 (719)
|+-+++.+.||+++++|+.++++ ||+|++||++||+++||+.+|++|| +|++||| |+|+||++|++|+++
T Consensus 2 ~i~~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p---~~~~RDR-vlSkGHas~~lYA~L 77 (386)
T cd02017 2 EIERRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARG---EGGGGDL-VYFQGHASPGIYARA 77 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCC---CCCCCCE-EEeCCcccHHHHHHH
Confidence 45578899999999999999887 9999999999999999999999887 5999999 889999999999999
Q ss_pred HHhCCCCCChhHHhhhhhcCC--CCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEE
Q 005021 160 HLAGYDSVQEDDLKNFRQWGS--KTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYV 236 (719)
Q Consensus 160 ~l~G~~~~~~~~l~~~r~~~~--~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~ 236 (719)
+++|++ +.++|++|||.+| .++|||++..+| +++++||++|||+++|+|||+|.|+++++|++.+ .+++|||
T Consensus 78 ~l~G~~--~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~---~~~rvyv 152 (386)
T cd02017 78 FLEGRL--TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDT---SDQKVWA 152 (386)
T ss_pred HHcCCC--CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCC---CCCeEEE
Confidence 999996 8999999999999 577999887666 4999999999999999999999999887776533 5799999
Q ss_pred EEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEEE--------------
Q 005021 237 ILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV-------------- 300 (719)
Q Consensus 237 iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~v-------------- 300 (719)
++||||++||++|||+++|++++|+|||+|||+|++||+++++. ...+++.+||++|||+|++|
T Consensus 153 llGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~g 232 (386)
T cd02017 153 FLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDG 232 (386)
T ss_pred EEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCc
Confidence 99999999999999999999999999999999999999999986 56899999999999999843
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 233 g~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~~~kPt~I 312 (386)
T cd02017 233 GGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKPTVI 312 (386)
T ss_pred chHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhCCCCCeEE
Confidence
Q ss_pred --eeeecCCCc-cccccccccC-CCCCHHHHHHHHHHcCCC
Q 005021 301 --TTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWP 337 (719)
Q Consensus 301 --~t~~g~g~~-~~~~~~~~h~-~~l~~~~~~~~~~~l~~~ 337 (719)
+|+||+|.+ +.++...+|+ .+++++++++++++++|+
T Consensus 313 ia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~lg~~ 353 (386)
T cd02017 313 LAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDRFGIP 353 (386)
T ss_pred EEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHHcCCC
Confidence 689999987 5777888886 888999999999999974
No 31
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-49 Score=427.88 Aligned_cols=294 Identities=21% Similarity=0.235 Sum_probs=243.2
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 486 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv 486 (719)
.+++|++++++|.+++++||+++++++|++..+.. ...+.+|++ +| |+||||+||+||+|+|+|+|||+.| ++||
T Consensus 34 ~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~-~~~~~~f~~-~fgP~R~id~GIaEq~~vg~AaGlA~~G--~~Pv 109 (355)
T PTZ00182 34 KMNVREAINSALDEELARDPKVFVLGEDVAQYGGV-YKCTKGLLD-KYGPDRVFDTPITEQGFAGFAIGAAMNG--LRPI 109 (355)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCc-hhhhHHHHH-HhCCCceeecCccHHHHHHHHHHHHhCC--CEEE
Confidence 46789999999999999999999999998622110 112356866 89 9999999999999999999999999 6999
Q ss_pred EEe-hhhhHHhHHHHHHHH-hhhc------CCEEEEEecCCCccCCCCCCC-CChhhhhHHcCCCCeEEEeeCCHHHHHH
Q 005021 487 CAT-FFVFTDYMRAAIRIS-ALCE------AGVIYVMTHDSIGLGEDGPTH-QPIEHLASFRAMPNILMLRPADGNETAG 557 (719)
Q Consensus 487 ~~~-y~~F~~ra~dqir~~-a~~~------~pV~~v~~~~g~g~g~dG~TH-q~~edia~lr~iPnl~V~~P~d~~e~~~ 557 (719)
+++ |++|++|++|||++. |+++ +||.+++++.+.++|++|+|| |..+ ++||+||||+|++|+|+.|++.
T Consensus 110 v~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~e--a~lr~iPn~~V~~Psd~~e~~~ 187 (355)
T PTZ00182 110 AEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFE--AYFAHVPGLKVVAPSDPEDAKG 187 (355)
T ss_pred EEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHH--HHHhcCCCCEEEeeCCHHHHHH
Confidence 986 899999999999875 8763 455555556777789999999 5553 9999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCC----CCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc
Q 005021 558 AYKVAVANRKRPSILALSRQ----KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 633 (719)
Q Consensus 558 ~l~~a~~~~~~P~~irl~r~----~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 633 (719)
+++++++ .++|+||++||. ..+.++. ..+.+++|+++++++ |.|++||+||+++..|++|++.|+++|++
T Consensus 188 ~l~~a~~-~~~P~~i~~p~~l~r~~~~~~~~-~~~~~~~Gk~~vl~~----G~di~Iia~Gs~~~~aleAa~~L~~~Gi~ 261 (355)
T PTZ00182 188 LLKAAIR-DPNPVVFFEPKLLYRESVEVVPE-ADYTLPLGKAKVVRE----GKDVTIVGYGSQVHVALKAAEELAKEGIS 261 (355)
T ss_pred HHHHHHh-CCCcEEEEeehHHhCCCCCCCCc-ccccccCCcceEecC----CCCEEEEEeCHHHHHHHHHHHHHHhCCCc
Confidence 9999997 589999987764 3332222 234578899998887 78999999999999999999999999999
Q ss_pred EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhhh------------cCCceEEee-CcCCCCCCHHH
Q 005021 634 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV------------GSKGKAIGI-DRFGASAPAGK 699 (719)
Q Consensus 634 v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~~------------~~~~~~ig~-d~f~~~g~~~e 699 (719)
++|||+++++|||++.+. +.+.+++ .+|++||+... ||++.+ ..++.++|+ |.|+++.. .
T Consensus 262 v~vI~~~~l~Pld~e~i~--~~~~~~~--~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~--~ 335 (355)
T PTZ00182 262 CEVIDLRSLRPWDRETIV--KSVKKTG--RCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAK--N 335 (355)
T ss_pred EEEEEEeeCCCCCHHHHH--HHHhcCC--EEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCCh--H
Confidence 999999999999998764 3444443 36999999885 565421 346788999 78987764 4
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 005021 700 IYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 700 l~~~~gl~~e~I~~~i~~~l 719 (719)
|++.+.++++.|+++|++++
T Consensus 336 le~~~~~~~~~i~~~~~~~~ 355 (355)
T PTZ00182 336 LEPAYLPDKEKVVEAAKRVL 355 (355)
T ss_pred HHHHhCCCHHHHHHHHHHhC
Confidence 89999999999999999875
No 32
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.8e-45 Score=371.60 Aligned_cols=291 Identities=19% Similarity=0.197 Sum_probs=241.1
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCC--CCccccccccccCcccCCC-CCccccccccchHHHHHHHHHhcCCCCcc
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLA--SSNMTLLKMFGDFQKDTPE-ERNVRFGVREHGMGAICNGIALHSPGLIP 485 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~--~s~~~~~~g~~~f~~~~~p-~R~~d~GIaE~~~vg~AaGlA~~G~~~~P 485 (719)
+++++|++++|.+.|++|++++++++|++ ++.+..++| +++ +|+ +|+||+||+|.+++|+|.|+|+.| +||
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~G---L~~-kfG~~RV~DTPiaE~gi~G~avGaA~~G--lrP 75 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKG---LQE-KFGEERVIDTPIAESGIAGIAVGAALTG--LRP 75 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchh---HHH-HhCccceecCccchhhhHHHHHHHHHcC--Ccc
Confidence 56899999999999999999999999996 444545555 444 674 699999999999999999999999 799
Q ss_pred EEE-ehhhhHHhHHHHHHHH-h---h-----hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHH
Q 005021 486 YCA-TFFVFTDYMRAAIRIS-A---L-----CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNET 555 (719)
Q Consensus 486 v~~-~y~~F~~ra~dqir~~-a---~-----~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~ 555 (719)
++. +|.+|+.-++|||-+. | | .++|+++++ ..|.|. .|+.||+..-.++|.++||++|++|+++.|+
T Consensus 76 ivEiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~-p~G~g~--~~~~~HSqs~ea~f~h~PGlKVV~PStpyDA 152 (324)
T COG0022 76 IVEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRT-PNGGGI--GGGAQHSQSLEALFAHIPGLKVVMPSTPYDA 152 (324)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEc-CCCCCC--CchhhccCCHHHHHhcCCCceEEecCChHHH
Confidence 996 6999999999998765 3 2 479999997 344443 3566666666799999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCC----CCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCC
Q 005021 556 AGAYKVAVANRKRPSILALSRQKLP----HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG 631 (719)
Q Consensus 556 ~~~l~~a~~~~~~P~~irl~r~~~~----~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~G 631 (719)
+++|+.|++ .++||++..++.... .+++ ..+.+++||+.++++ |+|+|||+||.||+.+++||++|+++|
T Consensus 153 KGLL~aAIr-d~dPViflE~k~lY~~~~~eVP~-~~Y~iPlGkA~i~re----G~DvTivtyg~mv~~al~AAe~l~~~G 226 (324)
T COG0022 153 KGLLKAAIR-DPDPVIFLEHKRLYRSFKGEVPE-EDYTIPLGKAKIVRE----GSDVTIVTYGAMVHTALEAAEELEKEG 226 (324)
T ss_pred HHHHHHHhc-CCCCEEEEecHHHhcccccCCCC-CCccccccceeeEec----CCceEEEEechHHHHHHHHHHHHhhcC
Confidence 999999997 699999998753222 2333 456799999999998 899999999999999999999999999
Q ss_pred CcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchh------------hhcCCceEEee-CcCCCCCCHH
Q 005021 632 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEK------------IVGSKGKAIGI-DRFGASAPAG 698 (719)
Q Consensus 632 i~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~------------~~~~~~~~ig~-d~f~~~g~~~ 698 (719)
|+++|||+||+.|||.+++. +||.||++. +|+.|+....|++. ++.+++.|+.- |...++ ..
T Consensus 227 is~EVIDLRTl~PlD~etIi--~SvkKTgR~-viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~--~~ 301 (324)
T COG0022 227 ISAEVIDLRTLSPLDKETII--ASVKKTGRL-VIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPY--SA 301 (324)
T ss_pred CCeEEEeccccCccCHHHHH--HHHHhhCcE-EEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCc--ch
Confidence 99999999999999999985 799999965 46667776777653 34567777755 655543 35
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 005021 699 KIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 699 el~~~~gl~~e~I~~~i~~~l 719 (719)
.|.+.+-.+++.|.+++++++
T Consensus 302 ~lE~~~lp~~~~I~~av~~v~ 322 (324)
T COG0022 302 ALEKAYLPNPERIVAAVKKVL 322 (324)
T ss_pred hHHhhhCCCHHHHHHHHHHHh
Confidence 688888899999999999874
No 33
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=1.6e-46 Score=379.93 Aligned_cols=233 Identities=23% Similarity=0.344 Sum_probs=158.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
++.+| |++||+|||.++++.+++ ++||++++||+|||++|||++ ||+ |+|++|||+|||+ |+||+|
T Consensus 13 ls~~e-L~~La~eiR~~ii~~vs~-~GGHl~snLGvVELTiALH~v---Fd~------p~DkivwDvGHQ~---Y~HKiL 78 (270)
T PF13292_consen 13 LSIEE-LEQLAQEIREFIIETVSK-TGGHLASNLGVVELTIALHYV---FDS------PKDKIVWDVGHQA---YVHKIL 78 (270)
T ss_dssp S-GGG-HHHHHHHHHHHHHHHCTC-CCSTHHHHHCCHHHHHHHHHH---S-T------TTSEEEESSSTT----HHHHHC
T ss_pred CCHHH-HHHHHHHHHHHHHHHHhh-cCCCCCCCccHHHHHHHHHHH---hCC------CCCeEEEeccccc---chhhhc
Confidence 44444 999999999999999987 999999999999999999999 997 9999999999999 999999
Q ss_pred hCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc
Q 005021 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (719)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (719)
|| |++.|.|+||.+|++ |||++.|+|+|.|.+||.|++||.|+|||.|+++++ .+++|||+||||
T Consensus 79 TG----R~~~f~TlRq~gGlS-GF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~----------~~~~vVaVIGDG 143 (270)
T PF13292_consen 79 TG----RRDRFHTLRQYGGLS-GFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKG----------EDRKVVAVIGDG 143 (270)
T ss_dssp TT----TCCCGGGTTSTTS---SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHT----------S---EEEEEETT
T ss_pred cC----cHHHhchhhhcCCcC-CCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcC----------CCCcEEEEECCc
Confidence 99 568999999999999 999999999999999999999999999999999987 378999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc-------chhHHHHHhccCceEEEEeeeecCCCcccccc
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-------TENVDKRFEGLGWHVIWVTTTIGFGSPNKANS 314 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~-------~~~~~~~~~a~G~~~~~v~t~~g~g~~~~~~~ 314 (719)
+++.|++|||||+|+..+ +|+|+|+|||+|||+.+++... ..+.+.+++...+.+++. + ....+..
T Consensus 144 alt~Gma~EALN~~g~~~-~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~--~----~~~~~~~ 216 (270)
T PF13292_consen 144 ALTGGMAFEALNNAGHLK-SNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKK--I----PPIEEFA 216 (270)
T ss_dssp GGGSHHHHHHHHHHHHHT--SEEEEEEE-SBSSSB--SSHCCC-------------------------------------
T ss_pred chhHHHHHHHHHHHHhcC-CCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHh--h----hHHHHHH
Confidence 999999999999999998 7899999999999999997421 233444454444443331 1 0000000
Q ss_pred ccccCCCCCHHHHHHHHHHcCC----CCCCCCCcHHHHHHHHH
Q 005021 315 YSVHGSALGAKEVDATRKNLGW----PYEPFHVPEDVKKHWSR 353 (719)
Q Consensus 315 ~~~h~~~l~~~~~~~~~~~l~~----~~~~~~~~~~v~~~~~~ 353 (719)
.+.... ++.. ...+++++|+ |.|++++++ ++..|+.
T Consensus 217 ~r~~~s-~K~~-~~~lFe~LG~~Y~GPiDGHdl~~-Li~~l~~ 256 (270)
T PF13292_consen 217 KRIKES-LKGF-SPNLFEELGFDYIGPIDGHDLEE-LIEVLEN 256 (270)
T ss_dssp --------------CCCHHCT-EEEEEEETT-HHH-HHHHHHH
T ss_pred HHHhhh-hhhh-hHHHHHHcCCeEEeccCCCCHHH-HHHHHHH
Confidence 011111 1111 2357788887 888998865 6666654
No 34
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=9e-45 Score=378.99 Aligned_cols=226 Identities=54% Similarity=0.843 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHH
Q 005021 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDL 172 (719)
Q Consensus 93 ~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l 172 (719)
++||+++++|+.++++||+|+++|++|++.+||+.+|++||+||+|++|||||+|+||++|++|++++++|++ +.++|
T Consensus 1 ~~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~--~~~~l 78 (255)
T cd02012 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYL--PEEDL 78 (255)
T ss_pred ChHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCC--CHHHH
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999986 89999
Q ss_pred hhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHH
Q 005021 173 KNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS 252 (719)
Q Consensus 173 ~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAl 252 (719)
.+||+.++.++|||++...||+++++|++|+|++.|+|+|+|.++.+ .+++|||++|||++++|++||++
T Consensus 79 ~~~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~----------~~~~v~~i~GDG~~~~G~~~eal 148 (255)
T cd02012 79 KTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLG----------FDYRVYVLLGDGELQEGSVWEAA 148 (255)
T ss_pred HHhcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhC----------CCCEEEEEECcccccccHHHHHH
Confidence 99999999899999987788999999999999999999999999875 47899999999999999999999
Q ss_pred HHhhhcCCCcEEEEEeCCCCCcccchh-hhcchhHHHHHhccCceEEEE---------------------------eeee
Q 005021 253 SLAGHLGLGKLIAFYDDNHISIDGDTE-IAFTENVDKRFEGLGWHVIWV---------------------------TTTI 304 (719)
Q Consensus 253 n~A~~~~L~nli~ivddN~~sis~~~~-~~~~~~~~~~~~a~G~~~~~v---------------------------~t~~ 304 (719)
+.|++++|+||++|+|||++++++++. .....++.+++++|||++++| +|.+
T Consensus 149 ~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~t~k 228 (255)
T cd02012 149 SFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIK 228 (255)
T ss_pred HHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 999999999999999999999999884 345678999999999999988 6889
Q ss_pred cCCCccccccccccCCCCCHHHHHHH
Q 005021 305 GFGSPNKANSYSVHGSALGAKEVDAT 330 (719)
Q Consensus 305 g~g~~~~~~~~~~h~~~l~~~~~~~~ 330 (719)
|+|.+..+++..+|+.+++++++++.
T Consensus 229 g~g~~~~e~~~~~H~~~~~~~~~~~~ 254 (255)
T cd02012 229 GKGVPFMENTAKWHGKPLGEEEVELA 254 (255)
T ss_pred ccccCccCCCccccCCCCCHHHHHhh
Confidence 99998888888999998888777643
No 35
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3e-38 Score=313.89 Aligned_cols=291 Identities=17% Similarity=0.214 Sum_probs=238.0
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCC--CccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCc
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLAS--SNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI 484 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~--s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~ 484 (719)
.++.|+|++++|.+.+++||++++++++++- +.....+||- + +| +.|++|+||+|.+..|+|.|.|..| ++
T Consensus 34 ~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~---~-K~G~~RV~DTPItE~gFtG~avGAA~~G--Lr 107 (359)
T KOG0524|consen 34 EMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLL---D-KFGDKRVLDTPITEMGFTGIAVGAAMAG--LR 107 (359)
T ss_pred eeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHH---H-hcCCceeecCcchhcccchhhHhHHHhC--cc
Confidence 4778999999999999999999999999973 3334456642 3 56 6799999999999999999999999 79
Q ss_pred cEEE-ehhhhHHhHHHHHHHHh---------hhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHH
Q 005021 485 PYCA-TFFVFTDYMRAAIRISA---------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 554 (719)
Q Consensus 485 Pv~~-~y~~F~~ra~dqir~~a---------~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e 554 (719)
|+|. +-..|+..+.|||-|+| .+++|++|++ +.|.+.| -|+.|. +.-.+|+.++||++|++|.+++|
T Consensus 108 Pi~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRG-PnG~~~g-v~AqHS-Q~f~~wy~siPGlkvvapysaed 184 (359)
T KOG0524|consen 108 PICEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRG-PNGAAAG-VAAQHS-QDFASWYGSIPGLKVVAPYSAED 184 (359)
T ss_pred hhhhhhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeC-CCCcccc-hhhhhh-hhhHHHhccCCCceEeccCChhh
Confidence 9995 67899999999998864 2589999998 3455444 466663 43448999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEcC----CCCCCCCCC---CccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHH
Q 005021 555 TAGAYKVAVANRKRPSILALSR----QKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEEL 627 (719)
Q Consensus 555 ~~~~l~~a~~~~~~P~~irl~r----~~~~~~~~~---~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L 627 (719)
++++|+.|++ .++|+++...- ...+ ++++ +.+.+++|++++.++ |.|||||++.-++..|++||+.|
T Consensus 185 akGLlKaAIR-d~NPVV~lEnelLYg~~f~-i~~E~ls~~fv~p~gkAkier~----G~~iTivt~Sr~v~~~leAA~~L 258 (359)
T KOG0524|consen 185 AKGLLKAAIR-DENPVVFLENELLYGLSFE-IPEEALSKDFVLPLGKAKIERE----GTHITIVTYSRMVGHCLEAAETL 258 (359)
T ss_pred hhhHHHHhcc-CCCCeEEEechhhcCCCcc-CChhhcCcceeeeccceeeeec----CCceEEEEechhHHHHHHHHHHH
Confidence 9999999996 69999997532 1122 1111 346689999999998 79999999999999999999999
Q ss_pred HhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchh------------hhcCCceEEee-CcCCC
Q 005021 628 RKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEK------------IVGSKGKAIGI-DRFGA 693 (719)
Q Consensus 628 ~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~------------~~~~~~~~ig~-d~f~~ 693 (719)
.++|++++|||+|+|+|||.+++. .||.|+++ +|++|+.+. +|.+. |+++++.++.- |.+.+
T Consensus 259 ~~~Gvs~EVInlrSirP~D~~tI~--~Sv~KT~~--lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~P 334 (359)
T KOG0524|consen 259 VAKGVSAEVINLRSIRPFDIETIG--ASVKKTNR--LVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTP 334 (359)
T ss_pred HhcCCCceeEeeeccCcccHHHHH--HHHhhhce--EEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCc
Confidence 999999999999999999999986 68999985 599999987 46543 45567777644 77666
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 694 SAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 694 ~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+. .+|.+..-.++++|+.++++++
T Consensus 335 Ya--~~lE~~a~p~~~~iV~Avk~~~ 358 (359)
T KOG0524|consen 335 YA--KTLEDWAVPQPADIVTAVKKLC 358 (359)
T ss_pred cc--hhhHhhcCCCHHHHHHHHHHhh
Confidence 64 4677777889999999999864
No 36
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=8.1e-35 Score=343.44 Aligned_cols=455 Identities=13% Similarity=0.106 Sum_probs=294.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCC--cEEEEEeCCCCCc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHISI 274 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~--nli~ivddN~~si 274 (719)
.+|+|...+.|+|.|+|.++.+... .+.....++|++|||++ .+|.+||+||+|+.|+|+ ++|+||+||+|++
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~----~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~ 388 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDG----QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGF 388 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCc----ccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE
Confidence 4899999999999999999875210 11123689999999998 799999999999999995 6999999999999
Q ss_pred ccchhhh-cchhHHHHHhccCceEEEE-----------------eeeecCCCccccc-cccccCCCCC-------HHHHH
Q 005021 275 DGDTEIA-FTENVDKRFEGLGWHVIWV-----------------TTTIGFGSPNKAN-SYSVHGSALG-------AKEVD 328 (719)
Q Consensus 275 s~~~~~~-~~~~~~~~~~a~G~~~~~v-----------------~t~~g~g~~~~~~-~~~~h~~~l~-------~~~~~ 328 (719)
+++.... ......++.++||.+++.| ..++|.|+.+++. .+++||+.-. +++++
T Consensus 389 tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~ 468 (924)
T PRK09404 389 TTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYK 468 (924)
T ss_pred eeCHHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHH
Confidence 9988643 3456888999999999999 3467888887753 5666665321 23333
Q ss_pred HHHHHcCCCCCCCCCcHHHHHHHHH-Hhhcch-------hHHHHHHHHHh-hh--hhc-Cchh-----hh----------
Q 005021 329 ATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGA-------TLEAEWNAKFA-EY--EKK-YPEE-----AA---------- 381 (719)
Q Consensus 329 ~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~-------~~~~~~~~~~~-~~--~~~-~p~~-----~~---------- 381 (719)
...+. .+| +..|++ +..+|. .+..+..+.+. ++ ++. .+.. +.
T Consensus 469 ~~~~~----~dp-------i~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 537 (924)
T PRK09404 469 KIKKH----PTT-------RELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSPYLGHEWDDP 537 (924)
T ss_pred HHHhc----CCH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccc
Confidence 22211 121 222322 222221 11111111111 01 110 0100 00
Q ss_pred --------hhhhhhc--CCCCCcccccCCCC----------CCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCc-
Q 005021 382 --------EFKSISS--GQLPAGWEKALPTY----------TPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSN- 440 (719)
Q Consensus 382 --------~~~~~~~--g~~p~~~~~~~~~~----------~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~- 440 (719)
.+..... ...|+++. ..|+. ..+.....+..|...++..++++|++|++.++|++.++
T Consensus 538 ~~t~v~~~~l~~~~~~~~~~P~~f~-~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtF 616 (924)
T PRK09404 538 VDTGVPLERLKELAEKLTTVPEGFK-VHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTF 616 (924)
T ss_pred cCCCCCHHHHHHHHHHhccCCCCCc-ccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcc
Confidence 0000000 01122221 00000 01122356778888999999999999999999997432
Q ss_pred ------------cccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCcc--EEE-ehhhhHH---hHHHHH
Q 005021 441 ------------MTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP--YCA-TFFVFTD---YMRAAI 501 (719)
Q Consensus 441 ------------~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~P--v~~-~y~~F~~---ra~dqi 501 (719)
...+.-+..+.. +| |.|++|++|+|.+++|++.|+|+.| ++| |+. +|.+|+. .++||+
T Consensus 617 shRHavl~dq~~gg~~~~~~~l~~-~~g~~rV~nsplsE~~~~G~~~G~a~~g--~~~l~i~E~qfgDF~~~AQ~~~Dq~ 693 (924)
T PRK09404 617 SHRHAVLHDQKTGETYIPLNHLSE-GQASFEVYDSPLSEEAVLGFEYGYSTAE--PNTLVIWEAQFGDFANGAQVVIDQF 693 (924)
T ss_pred cccchhccccCCCCEeccccchhh-hcCCceEecCcchHHHHHHHHHHHHhcC--CCCceEEEEeccccccchHHHHHHH
Confidence 111222233434 55 8999999999999999999999999 565 885 7999986 779997
Q ss_pred HHHh--h--hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCC--CCeEEEeeCCHHHHHHHHHHHH-HcCCCcEEEEE
Q 005021 502 RISA--L--CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM--PNILMLRPADGNETAGAYKVAV-ANRKRPSILAL 574 (719)
Q Consensus 502 r~~a--~--~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~i--Pnl~V~~P~d~~e~~~~l~~a~-~~~~~P~~irl 574 (719)
-+.+ . ...++++.+.| | ++..|+-||+..-.++|... |||+|+.|+++.|+.++|+.++ +...+|++|..
T Consensus 694 i~~~~~k~~~~sglv~~~p~-G--~~g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~ 770 (924)
T PRK09404 694 ISSGEQKWGRLSGLVMLLPH-G--YEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMT 770 (924)
T ss_pred HHHHHHHhcCccCeEEEecC-c--CCCCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEec
Confidence 6653 1 24677777643 3 33457788776666888555 7999999999999999999865 54359999999
Q ss_pred cCCCCCCCCC-CCccccccccEE-EecCCC-CCCCCE--EEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHH
Q 005021 575 SRQKLPHLAG-TSIDGVEKGAYI-ISDNSS-GNKPDV--ILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS 649 (719)
Q Consensus 575 ~r~~~~~~~~-~~~~~~~~G~~~-i~~~~~-~~g~dv--tIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~ 649 (719)
||.-+..... .....+..|.+. ++.+.. ..+.|| +||+||.+++.++++++.+. ..+++||++++|.|||.+.
T Consensus 771 pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v~ii~le~L~P~~~~~ 848 (924)
T PRK09404 771 PKSLLRHPLAVSSLEELAEGSFQPVIGDIDELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDVAIVRIEQLYPFPHEE 848 (924)
T ss_pred cHHHhCCCCCCCCHHHcCCCCceeecccccccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCEEEEEeeeeCCCCHHH
Confidence 8754421100 011112222221 211100 015689 79999999999999988553 3499999999999999988
Q ss_pred HHhhhhhccCC--CceEEEEccccccCchhh
Q 005021 650 DAYKESVLPAA--VSARVSIEAGSTFGWEKI 678 (719)
Q Consensus 650 ~~~~~sv~~~~--~~~vvvvE~~~~~G~~~~ 678 (719)
+. ++|.+++ ..++++.|+....|...|
T Consensus 849 i~--~~v~k~~~~~~~v~vqEe~~n~G~~~~ 877 (924)
T PRK09404 849 LA--AELAKYPNAKEVVWCQEEPKNQGAWYF 877 (924)
T ss_pred HH--HHHHhcCCCCeEEEEeeCCCCCCcHHH
Confidence 75 6777753 245566777777775443
No 37
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=5.9e-37 Score=306.93 Aligned_cols=159 Identities=27% Similarity=0.437 Sum_probs=144.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCCCCCC
Q 005021 108 SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPE 187 (719)
Q Consensus 108 ~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g~p~ 187 (719)
+||+|++||++||+++||++ +|+ +|||||||+||++ |++++++|+ +++|++||+.++ ++|||+
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~---~~~------~rDr~ils~gH~~---~~~~~~~g~----~~~l~~~~~~~~-~~g~p~ 63 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYV---FDS------PKDKIIWDVGHQA---YPHKILTGR----RDQFHTLRQYGG-LSGFTK 63 (195)
T ss_pred CCCCCcchhHHHHHHHHHHh---cCC------CCCeEEEecccHH---HHHHHHHCC----HHHHhhhhcCCC-CCCCCc
Confidence 69999999999999999964 554 7999999999999 787788994 689999999999 779999
Q ss_pred CCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEE
Q 005021 188 NFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267 (719)
Q Consensus 188 ~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~iv 267 (719)
+.++|++++++|++|+|++.|+|+|+|.|+++ .+++|||++|||+++||++|||+++|+++ +.|+++|+
T Consensus 64 ~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~~~li~vv 132 (195)
T cd02007 64 RSESEYDAFGTGHSSTSISAALGMAVARDLKG----------KKRKVIAVIGDGALTGGMAFEALNNAGYL-KSNMIVIL 132 (195)
T ss_pred CCCCCCceECCCchhhhHHHHHHHHHHHHHhC----------CCCeEEEEEcccccccChHHHHHHHHHHh-CCCEEEEE
Confidence 88889999999999999999999999999876 37899999999999999999999999999 57899999
Q ss_pred eCCCCCcccchhhhcchhHHHHHhccCceEEE
Q 005021 268 DDNHISIDGDTEIAFTENVDKRFEGLGWHVIW 299 (719)
Q Consensus 268 ddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~ 299 (719)
|||+++++++++ +..++|+++||++..
T Consensus 133 dnN~~~~~~~~~-----~~~~~~~a~G~~~~~ 159 (195)
T cd02007 133 NDNEMSISPNVG-----TPGNLFEELGFRYIG 159 (195)
T ss_pred ECCCcccCCCCC-----CHHHHHHhcCCCccc
Confidence 999999998876 467889999998774
No 38
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=2.1e-34 Score=338.17 Aligned_cols=450 Identities=15% Similarity=0.116 Sum_probs=294.8
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCCcE---EEEEeC
Q 005021 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLGKL---IAFYDD 269 (719)
Q Consensus 194 i~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~nl---i~ivdd 269 (719)
+....+||+...++|+|.|+|.++.+... .+..+..++|++|||++ .+|.+||+||+|+.|+|+ + |+||.|
T Consensus 310 l~~npSHLeav~Pva~G~ArA~q~~~~~~----~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lP-vGGtIfvveN 384 (929)
T TIGR00239 310 LAFNPSHLEIVSPVVIGSTRARLDRLNDS----PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYS-VGGTIHIIIN 384 (929)
T ss_pred ecCCCcccccccchhhhHHHHHHHhcCCc----ccccceEEEEEeccccccCCChHHHHHHHHHhcCCC-CCCEEEEEEe
Confidence 45567899999999999999999875210 11135789999999997 799999999999999995 5 999999
Q ss_pred CCCCcccchhhhc-chhHHHHHhccCceEEEE-----------------eeeecCCCccccc-cccccCCCCCH------
Q 005021 270 NHISIDGDTEIAF-TENVDKRFEGLGWHVIWV-----------------TTTIGFGSPNKAN-SYSVHGSALGA------ 324 (719)
Q Consensus 270 N~~sis~~~~~~~-~~~~~~~~~a~G~~~~~v-----------------~t~~g~g~~~~~~-~~~~h~~~l~~------ 324 (719)
|+|+++++..... .....++.++||.+++.| ..++|+|+.+++. .+++||+.-.+
T Consensus 385 Nqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yr 464 (929)
T TIGR00239 385 NQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQ 464 (929)
T ss_pred CCEEEEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCC
Confidence 9999999875443 446888999999999999 3466888877753 55666553211
Q ss_pred -HHHHHHHHHcCCCCCCCCCcHHHHHHHHH-Hhhcch-------hHHHHHHHHHh-hh--hhcC--chhh--h--hhhh-
Q 005021 325 -KEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGA-------TLEAEWNAKFA-EY--EKKY--PEEA--A--EFKS- 385 (719)
Q Consensus 325 -~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~-------~~~~~~~~~~~-~~--~~~~--p~~~--~--~~~~- 385 (719)
++++...+ ..+ .+..|++ +..+|- .+.+++.+.+. ++ ++.. |... . .+..
T Consensus 465 p~~~~~i~~----~~d-------Pi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 533 (929)
T TIGR00239 465 PLMYQKIKK----HPT-------PRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTASFTWSPELNH 533 (929)
T ss_pred HHHHHHHHh----CCC-------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccccccccc
Confidence 22221111 011 2223332 222221 11111111111 01 1111 1110 0 0000
Q ss_pred ----hh-cC--------------CCCCcccccCC-----------CCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecC
Q 005021 386 ----IS-SG--------------QLPAGWEKALP-----------TYTPESPAEATRNLSQTCLNALAKTLPGLLGGSAD 435 (719)
Q Consensus 386 ----~~-~g--------------~~p~~~~~~~~-----------~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saD 435 (719)
.. ++ ..|+.++. .| ....+....++..|...+|..++++|++|+++++|
T Consensus 534 ~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~-h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeD 612 (929)
T TIGR00239 534 EWDEEYPNKVEMKRLQELAKRISEVPEGVEM-HSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGED 612 (929)
T ss_pred ccccCCCCCCCHHHHHHHHHHhccCCCCccc-cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeee
Confidence 00 00 01222210 00 00011123567899999999999999999999999
Q ss_pred CCCCcc----------------ccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccE--E-EehhhhHH
Q 005021 436 LASSNM----------------TLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY--C-ATFFVFTD 495 (719)
Q Consensus 436 l~~s~~----------------~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv--~-~~y~~F~~ 495 (719)
++.+++ ..+++ +.. +| +.|++|++|+|.+++|++.|+|+.| ++|+ + .+|.+|+.
T Consensus 613 v~rGtFshRHavl~dq~~g~~~~~~~~---l~~-~~g~~rV~nsplSE~a~~G~~~G~a~~g--~~~l~i~E~qfgDF~~ 686 (929)
T TIGR00239 613 SERGTFFQRHAVLHDQSNGSTYTPLQH---LHN-GQGAFRVWNSVLSEESVLGFEYGYATTS--PRTLVIWEAQFGDFAN 686 (929)
T ss_pred CCCcccccccccccccccCceeecccc---hhh-hcCCeeEEcCCccHHHHHHHHHhHHhcC--CCCceEEEEeccchhc
Confidence 976554 22333 433 45 7999999999999999999999999 4774 5 47999985
Q ss_pred ---hHHHHHHHH--hh--hcCCEEEEEecCCCccCCCCCCCCChhhhhHH--cCCCCeEEEeeCCHHHHHHHHH-HHHHc
Q 005021 496 ---YMRAAIRIS--AL--CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF--RAMPNILMLRPADGNETAGAYK-VAVAN 565 (719)
Q Consensus 496 ---ra~dqir~~--a~--~~~pV~~v~~~~g~g~g~dG~THq~~edia~l--r~iPnl~V~~P~d~~e~~~~l~-~a~~~ 565 (719)
.++||+-+. +. ...++++...| | ++..|+-||+..-.++| .++|||+|+.|+++.|++++|+ .|++.
T Consensus 687 ~AQv~~Dq~i~~~~~K~~~~sglv~~~p~-G--~~g~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~r~ 763 (929)
T TIGR00239 687 GAQVVIDQFISSGEQKWGQMSGLVMLLPH-G--YEGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQALRG 763 (929)
T ss_pred chHHHHHHHHHHHHHHhcCccCeEEEecC-c--CCCCCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHHhC
Confidence 779998665 22 24667777643 3 34467788776666888 8999999999999999999999 68874
Q ss_pred CCCcEEEEEcCCCCCC---------CCCCCccccccccEEEecCCC-CCCCCEE-EEEeCHhHHHHHHHHHHHHhCCCcE
Q 005021 566 RKRPSILALSRQKLPH---------LAGTSIDGVEKGAYIISDNSS-GNKPDVI-LIGTGSELEIAAKAAEELRKGGKAV 634 (719)
Q Consensus 566 ~~~P~~irl~r~~~~~---------~~~~~~~~~~~G~~~i~~~~~-~~g~dvt-Iva~G~~v~~al~Aa~~L~~~Gi~v 634 (719)
.++|+++..||.-+.. ++.. .+..+++. +.+++. -...+++ ||.++.++..++++ +.++++|+++
T Consensus 764 ~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~-~f~~~i~~--~~~~~~~~~~~~v~~vv~~sg~v~~~l~~-~~~~~~~~~v 839 (929)
T TIGR00239 764 MRRPLVVMSPKSLLRHPLAVSSLEELAEG-TFQPVIGE--IEESGLSLDPEGVKRLVLCSGKVYYDLHE-QRRKNGQKDV 839 (929)
T ss_pred CCCCEEEeccHhhhcCccccCccccCCCC-Cccccccc--ccccccccCccCCcEEEEECchHHHHHHH-HHHhcCCCCE
Confidence 5899999998754421 1111 12222321 111100 0023555 66666688888888 6677789999
Q ss_pred EEEecCChhhHHHHHHHhhhhhccCC--CceEEEEccccccC-c
Q 005021 635 RVVSFVSWELFDEQSDAYKESVLPAA--VSARVSIEAGSTFG-W 675 (719)
Q Consensus 635 ~VId~~~l~pld~~~~~~~~sv~~~~--~~~vvvvE~~~~~G-~ 675 (719)
+|||+++|.|||.+.+. +++.++. ..++++-|+....| |
T Consensus 840 ~iirle~L~Pf~~~~i~--~sl~k~~~~~~~vw~qEep~n~Gaw 881 (929)
T TIGR00239 840 AIVRIEQLYPFPHKAVK--EVLQQYPNLKEIVWCQEEPLNMGAW 881 (929)
T ss_pred EEEEeeeeCCCCHHHHH--HHHHhcCCCCeEEEEeccCCCCCCH
Confidence 99999999999999875 6777764 24556667766666 5
No 39
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=5.1e-36 Score=290.19 Aligned_cols=154 Identities=42% Similarity=0.579 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhh
Q 005021 414 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVF 493 (719)
Q Consensus 414 a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F 493 (719)
+++++|.+++++||+++++++|++.++. +..|++ +||+||+|+||+|++|+++|+|||+.| ++||+++|..|
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~-----~~~~~~-~~p~r~i~~gIaE~~~vg~A~GlA~~G--~~pi~~~~~~f 73 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTG-----LDKFAK-KFPDRFIDVGIAEQNMVGIAAGLALHG--LKPFVSTFSFF 73 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCC-----cHHHHH-hCCCCeEEeChhHHHHHHHHHHHHHCC--CeEEEEECHHH
Confidence 5789999999999999999999975532 345766 899999999999999999999999999 69999999999
Q ss_pred HHhHHHHHH-HHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEE
Q 005021 494 TDYMRAAIR-ISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSIL 572 (719)
Q Consensus 494 ~~ra~dqir-~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~i 572 (719)
++|++|||| +.|++++||+++++++|++.|++|+|||+++|+++||++||++|++|+|++|++.++++|++ .++|+||
T Consensus 74 ~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~i 152 (156)
T cd07033 74 LQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYI 152 (156)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEE
Confidence 999999999 56999999999999998988899999999999999999999999999999999999999997 5789999
Q ss_pred EEcC
Q 005021 573 ALSR 576 (719)
Q Consensus 573 rl~r 576 (719)
|++|
T Consensus 153 rl~~ 156 (156)
T cd07033 153 RLPR 156 (156)
T ss_pred EeeC
Confidence 9987
No 40
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=1.7e-33 Score=278.55 Aligned_cols=168 Identities=26% Similarity=0.316 Sum_probs=143.1
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcC-CCCccE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS-PGLIPY 486 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G-~~~~Pv 486 (719)
+.++|++++++|.+++++||+++++++|++++++....++. .+..|+||||+||+|++|+++|+|||+.| . ++||
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~---~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~-~~~~ 77 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLA---FPFGPGRFINTGIAEQNMVGMAAGLALAGGL-RPPV 77 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHH---BHHTTTTEEE--S-HHHHHHHHHHHHHHSSS-EEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhcc---ccCCCceEEecCcchhhccceeeeeeecccc-ccee
Confidence 57899999999999999999999999999866554322211 11126699999999999999999999999 3 4788
Q ss_pred EEehhhhHH----hHHHHHH-HHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHH
Q 005021 487 CATFFVFTD----YMRAAIR-ISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKV 561 (719)
Q Consensus 487 ~~~y~~F~~----ra~dqir-~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~ 561 (719)
+.+|++|+. |+++|++ +.+++++||+ ++++++.++|.+|+|||+++|+++||+|||++|++|+|+.|++++|++
T Consensus 78 ~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~ 156 (178)
T PF02779_consen 78 ESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRA 156 (178)
T ss_dssp EEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHH
T ss_pred Eeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 899999999 9999998 4699999999 778899999999999999999999999999999999999999999999
Q ss_pred HHHc-CCCcEEEEEcCCCCC
Q 005021 562 AVAN-RKRPSILALSRQKLP 580 (719)
Q Consensus 562 a~~~-~~~P~~irl~r~~~~ 580 (719)
+++. .++|+|||++|+.++
T Consensus 157 a~~~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 157 AIRRESDGPVYIREPRGLYP 176 (178)
T ss_dssp HHHSSSSSEEEEEEESSEES
T ss_pred HHHhCCCCeEEEEeeHHhCC
Confidence 9973 589999999998775
No 41
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=1.1e-32 Score=268.59 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCC-CccccccccchHHHHHHHHHhcCCCCccEEE-ehh
Q 005021 414 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFF 491 (719)
Q Consensus 414 a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~-R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~y~ 491 (719)
+++++|.+++++||+++++++|+..++.. ...++.|++ +||+ ||||+||+||+|+|+|+|||+.| ++||++ +|+
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~-~~~~~~~~~-~~p~~R~~~~gIaEq~~vg~AaGlA~~G--~~pi~~~~~a 77 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGV-FKVTKGLLD-KFGPDRVIDTPIAEAGIVGLAVGAAMNG--LRPIVEIMFA 77 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCc-chHhHHHHH-hCCCceEEeCCCcHHHHHHHHHHHHHcC--CEEEEEeehH
Confidence 68899999999999999999998643211 112356876 8999 99999999999999999999999 599998 799
Q ss_pred hhHHhHHHHHHHH-hhh--------cCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHH
Q 005021 492 VFTDYMRAAIRIS-ALC--------EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVA 562 (719)
Q Consensus 492 ~F~~ra~dqir~~-a~~--------~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a 562 (719)
+|+.|++||||+. |++ ++||++++.+. +++.+|+|| +.+|+++||+||||+|++|+|+.|++.+++++
T Consensus 78 ~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~g--g~~~~G~th-s~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~ 154 (167)
T cd07036 78 DFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNG--GGIGGGAQH-SQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAA 154 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCC--CCCCcChhh-hhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999874 876 49999998443 467789985 58999999999999999999999999999999
Q ss_pred HHcCCCcEEEEEcC
Q 005021 563 VANRKRPSILALSR 576 (719)
Q Consensus 563 ~~~~~~P~~irl~r 576 (719)
++ .++|++|+.||
T Consensus 155 ~~-~~~P~~~~e~k 167 (167)
T cd07036 155 IR-DDDPVIFLEHK 167 (167)
T ss_pred Hh-CCCcEEEEecC
Confidence 96 68999999886
No 42
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=2.9e-30 Score=253.07 Aligned_cols=158 Identities=32% Similarity=0.474 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHhhCC-ceEEEecCCCCCccccccccccCcccCCCC-------CccccccccchHHHHHHHHHhcCC
Q 005021 410 ATRNLSQTCLNALAKTLP-GLLGGSADLASSNMTLLKMFGDFQKDTPEE-------RNVRFGVREHGMGAICNGIALHSP 481 (719)
Q Consensus 410 s~r~a~~~~L~~l~~~dp-~iv~~saDl~~s~~~~~~g~~~f~~~~~p~-------R~~d~GIaE~~~vg~AaGlA~~G~ 481 (719)
++|++++++|.+++++|+ +++++++|+..++.... .+ .||+ ||+|+||+|++|+++|+|||+.|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~------~~-~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G- 72 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR------GG-VFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAG- 72 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc------CC-ccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcC-
Confidence 368899999999999965 89999999976654321 11 4554 59999999999999999999999
Q ss_pred CCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecC-CCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHH
Q 005021 482 GLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHD-SIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 560 (719)
Q Consensus 482 ~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~-g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~ 560 (719)
++||+++|+.|+.|+++|+|..+.++ +++++++++ |...|++|+|||+++|+++||+|||++|++|+|+.|++.+++
T Consensus 73 -~~pi~~~~~~f~~~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~ 150 (168)
T smart00861 73 -LRPVVAIFFTFFDRAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLR 150 (168)
T ss_pred -CCcEEEeeHHHHHHHHHHHHHhCccc-CCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHH
Confidence 59999999999999999999985555 555666665 577899999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEcCC
Q 005021 561 VAVANRKRPSILALSRQ 577 (719)
Q Consensus 561 ~a~~~~~~P~~irl~r~ 577 (719)
++++..++|+|||++|+
T Consensus 151 ~a~~~~~~p~~i~~~~~ 167 (168)
T smart00861 151 AAIRRDDGPPVIRLERK 167 (168)
T ss_pred HHHhCCCCCEEEEecCC
Confidence 99965578999999875
No 43
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.97 E-value=2.8e-30 Score=253.28 Aligned_cols=288 Identities=16% Similarity=0.152 Sum_probs=222.4
Q ss_pred CcchHHHHHHHHHHHHHhhCCceEEEecCCCC-CccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCc
Q 005021 407 PAEATRNLSQTCLNALAKTLPGLLGGSADLAS-SNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI 484 (719)
Q Consensus 407 ~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~-s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~ 484 (719)
.++..-++++++|.-.++.||+-+++++|++- +.+.-+.| +++ +| .+|+||++++||+++|+..|+|..|. +
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~g---l~~-kfgk~rvfntplceqgivgfgig~aa~g~--~ 112 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTG---LAE-KFGKDRVFNTPLCEQGIVGFGIGLAAMGA--T 112 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecc---hHH-HhCccccccCchhhcccceechhhhhccc--c
Confidence 34555688999999999999999999999974 33332333 433 55 48999999999999999999999994 8
Q ss_pred cEEEe-hhhhHHhHHHHHHHH-h---h-----hcCC-EEEEEecCCCc-cCCCCCCCCChhhhhHHcCCCCeEEEeeCCH
Q 005021 485 PYCAT-FFVFTDYMRAAIRIS-A---L-----CEAG-VIYVMTHDSIG-LGEDGPTHQPIEHLASFRAMPNILMLRPADG 552 (719)
Q Consensus 485 Pv~~~-y~~F~~ra~dqir~~-a---~-----~~~p-V~~v~~~~g~g-~g~dG~THq~~edia~lr~iPnl~V~~P~d~ 552 (719)
.+..+ |++++.-+||||.+- + | -|+. ..++. .+| +|..|--| +..-.++|.+.||++|+.|..+
T Consensus 113 aiaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~---p~gavghg~~yh-sqspeaff~h~pgikvviprsp 188 (362)
T KOG0525|consen 113 AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRA---PWGAVGHGALYH-SQSPEAFFCHVPGIKVVIPRSP 188 (362)
T ss_pred eEEEEeeccccchhHHHHHHHHHhheeccCCccccCceEEec---cccccccccccc-cCCchhheecCCCceEEecCCc
Confidence 99975 778877899999874 3 2 1333 44443 344 57555444 4555599999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEcC----CCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHH
Q 005021 553 NETAGAYKVAVANRKRPSILALSR----QKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELR 628 (719)
Q Consensus 553 ~e~~~~l~~a~~~~~~P~~irl~r----~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~ 628 (719)
.|++++|-.+++ .++|+++..|| +...+++.. .+.++.+.++++++ |+|+|||+||..+|.++++|..-+
T Consensus 189 ~qakglllscir-dpnp~iffepk~lyr~a~edvp~~-dy~iplsqaevire----g~ditlv~wgtqvh~i~e~a~l~~ 262 (362)
T KOG0525|consen 189 RQAKGLLLSCIR-DPNPCIFFEPKILYRQAVEDVPEG-DYMIPLSQAEVIRE----GSDITLVAWGTQVHVIMEQACLAK 262 (362)
T ss_pred chhhceeeeecc-CCCceEEechHHHHHHhhhhCCCC-CccccccHHHHhhc----CCceEEEEcchhhHHHHHHHHhhH
Confidence 999999999996 69999999875 555556554 46799999999998 799999999999999999887544
Q ss_pred -hCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhc------------CCce-EEeeCcCCCC
Q 005021 629 -KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG------------SKGK-AIGIDRFGAS 694 (719)
Q Consensus 629 -~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~------------~~~~-~ig~d~f~~~ 694 (719)
+.|++++|||+.++-|+|.+.+. +||.|++.. +|++|.....||+..+. +++. ..|+|..-++
T Consensus 263 ek~giscevidlkti~pwd~d~v~--~sv~ktgrl-lisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~ 339 (362)
T KOG0525|consen 263 EKLGISCEVIDLKTIIPWDKDTVE--ESVQKTGRL-LISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH 339 (362)
T ss_pred HhcCCceEEEeeecccCccHHHHH--HHHHhhceE-EEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc
Confidence 45999999999999999999986 789999964 69999999899865332 2333 3477743333
Q ss_pred CCHHHHHH-HhCCCHHHHHHHHHHh
Q 005021 695 APAGKIYK-EFGITAEAVITAAKEV 718 (719)
Q Consensus 695 g~~~el~~-~~gl~~e~I~~~i~~~ 718 (719)
+.+ .|-.+.-.|.++|++.
T Consensus 340 -----vfepfy~ptk~ki~daik~~ 359 (362)
T KOG0525|consen 340 -----VFEPFYMPTKNKILDAIKKT 359 (362)
T ss_pred -----cccccccCcHhHHHHHHHHh
Confidence 222 3445778888888764
No 44
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.8e-27 Score=258.98 Aligned_cols=496 Identities=22% Similarity=0.266 Sum_probs=315.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCc-EEEeCCCCchHHHHHHHHhCCC-------CCChhHHh----
Q 005021 106 ANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHLAGYD-------SVQEDDLK---- 173 (719)
Q Consensus 106 ~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr-~Ils~GH~~~~~Ya~l~l~G~~-------~~~~~~l~---- 173 (719)
.--||+|++.+..-+.+-|-+..=++| .+. +|.-.||..|++-+..+|.|.. +.+.+.+.
T Consensus 58 r~lGHwGt~pg~s~~Y~H~nr~i~~~d--------~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~ 129 (793)
T COG3957 58 RLLGHWGTQPGLSFIYAHLNRLISKYD--------ANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFK 129 (793)
T ss_pred hhcccccCCCCchhhhhhhhHHHHhhC--------cceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHH
Confidence 457999999998866554443322333 455 4666799999999999999943 23334443
Q ss_pred hhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH---HHH
Q 005021 174 NFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI---ANE 250 (719)
Q Consensus 174 ~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~---~~E 250 (719)
.|+-.||+. +|..+ ++||.....|.||++++.|.|.|+ ++| +-.+.|++||||-.+|. .|-
T Consensus 130 qFs~PgGi~-SH~~p-etPGsIhEGGeLGy~l~ha~gAa~---------d~P-----dli~~~vvGDGeaetgplatsWh 193 (793)
T COG3957 130 QFSFPGGIG-SHVAP-ETPGSIHEGGELGYALSHAYGAAF---------DNP-----DLIVACVVGDGEAETGPLATSWH 193 (793)
T ss_pred hccCCCCcc-cccCC-CCCCccCcCcchhHHHHHHHHhhc---------CCC-----CcEEEEEecccccccCccccccc
Confidence 455556654 78876 899999999999999999999886 333 78999999999777764 576
Q ss_pred HHHHhhhcCCCcEEEEEeCCCCCcccchh--hhcchhHHHHHhccCceEEEE----------------------------
Q 005021 251 ASSLAGHLGLGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWV---------------------------- 300 (719)
Q Consensus 251 Aln~A~~~~L~nli~ivddN~~sis~~~~--~~~~~~~~~~~~a~G~~~~~v---------------------------- 300 (719)
+-.+..-.+-.+++-|+.-|+|+|+.++- ....+++.+.|++|||+-+.|
T Consensus 194 s~kf~np~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mAa~ldt~~~~i~~iq~ 273 (793)
T COG3957 194 SNKFLNPARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAAVLDTAFEEIQRIQR 273 (793)
T ss_pred cccccCccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhHHHHHHHHHHHHHHHHH
Confidence 65555555557899999999999999985 345667999999999998877
Q ss_pred ------------------eeeecCCCccc------cccccccCCCCCH-----HHHHHHHHHcCCCCCCCCCcHHHHHHH
Q 005021 301 ------------------TTTIGFGSPNK------ANSYSVHGSALGA-----KEVDATRKNLGWPYEPFHVPEDVKKHW 351 (719)
Q Consensus 301 ------------------~t~~g~g~~~~------~~~~~~h~~~l~~-----~~~~~~~~~l~~~~~~~~~~~~v~~~~ 351 (719)
+|-||++-+.. ++.-+.|..|++. +.+..+.+.+.. +++- | .|
T Consensus 274 ~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~~~~~p~h~~~l~~wl~s-y~p~----e---lf 345 (793)
T COG3957 274 RARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKGHNLNPAHLLELEEWLKS-YKPE----E---LF 345 (793)
T ss_pred HHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCCCCCCCchhhHHHHHHHHh-cChH----h---hh
Confidence 34455443322 1223345555432 122222222221 1111 0 01
Q ss_pred HHHhhcchhHHHHHHHHHhhhh--hcCchhhhhhhhhhcCCCCCcccc-cCCCCCCCCCcchHHHHHHHHHHHHHhhCCc
Q 005021 352 SRHVAEGATLEAEWNAKFAEYE--KKYPEEAAEFKSISSGQLPAGWEK-ALPTYTPESPAEATRNLSQTCLNALAKTLPG 428 (719)
Q Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~g~~p~~~~~-~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~ 428 (719)
. ..|....+.|.-.-++.+ ..+|.....+.. ..-.+| +|.. ..+.+..+........++++.|.++++.|++
T Consensus 346 d---e~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~-~eL~lP-D~r~~~v~~~~~g~~~~~~t~~lg~~l~dv~k~N~~ 420 (793)
T COG3957 346 D---EHGALKPELRELAPKGEERMGANPHANGGLLP-RELPLP-DLRDYAVEVSEPGAVTAESTTALGRFLRDVMKLNPD 420 (793)
T ss_pred c---ccCCCCHHHHHhccccccccCCCCcccCcccc-ccCCCC-ChhhcCcccCCCCccchhhHHHHHHHHHHHHhcCcc
Confidence 0 111111111110000000 011111000000 000112 1110 0111112222233347889999999999998
Q ss_pred -eEEEecCCCCCcccc--ccccc-----------cCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhH
Q 005021 429 -LLGGSADLASSNMTL--LKMFG-----------DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFT 494 (719)
Q Consensus 429 -iv~~saDl~~s~~~~--~~g~~-----------~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~ 494 (719)
+.++++|...|+... .+.+. +|. ...+|+++ .++|+.+.|++.|+++.|+ +-++++|..|+
T Consensus 421 ~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~l--sp~GRV~e-~LSEh~c~Gwlegy~LtGr--~glf~sYEaF~ 495 (793)
T COG3957 421 NFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFL--SPDGRVME-VLSEHACQGWLEGYLLTGR--HGLFASYEAFA 495 (793)
T ss_pred ceEeeCCCcchhhhhHHHHHHhhhhhcccccCccccc--CCCceeeh-hhcHHHHHHHHHHHHhcCC--ccceeeHHHHH
Confidence 999999976555331 22221 121 22479999 7999999999999999997 99999999998
Q ss_pred H---hHHHHH--H-HHh--------hhcCCEEEEEecCCCccCCCCCCCCChhhhh-HHcCCCC-eEEEeeCCHHHHHHH
Q 005021 495 D---YMRAAI--R-ISA--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA-SFRAMPN-ILMLRPADGNETAGA 558 (719)
Q Consensus 495 ~---ra~dqi--r-~~a--------~~~~pV~~v~~~~g~g~g~dG~THq~~edia-~lr~iPn-l~V~~P~d~~e~~~~ 558 (719)
. -|+.|. . ..| +..++.++.. .-.--+.+|.|||...-+. ++..+|+ ++||.|+|++.+-.+
T Consensus 496 ~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS--~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRvyfPpDaNtlLav 573 (793)
T COG3957 496 HIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTS--HVWRQDHNGFSHQDPGFIDHVANKKSDIVRVYFPPDANTLLAV 573 (793)
T ss_pred HHHHHHHhhhHHHHHHHHhcccCCCCCcccceeeh--hhhhcccCCCccCCchHHHHHHhhccCceeEecCCCCcchhhh
Confidence 4 566662 1 122 2344444432 2233589999999664444 3444555 699999999999999
Q ss_pred HHHHHHcCCCcEEEEEcCCCCCCCCC--CCccccccccEEEecCCC-CCCCCEEEEEeCHhH-HHHHHHHHHHHhCC--C
Q 005021 559 YKVAVANRKRPSILALSRQKLPHLAG--TSIDGVEKGAYIISDNSS-GNKPDVILIGTGSEL-EIAAKAAEELRKGG--K 632 (719)
Q Consensus 559 l~~a~~~~~~P~~irl~r~~~~~~~~--~~~~~~~~G~~~i~~~~~-~~g~dvtIva~G~~v-~~al~Aa~~L~~~G--i 632 (719)
+.+|++..+.-.+|..+|++.|.... +....+..|...+...+. .|.+||++.+.|.+. .++++|++.|++++ +
T Consensus 574 ~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~p~l 653 (793)
T COG3957 574 YDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREEGPEL 653 (793)
T ss_pred hhHHhhccCceEEEEecCCCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHHHHHHHHHhCccc
Confidence 99999877777888889998887543 123345666554433221 125789999999976 68999999999998 8
Q ss_pred cEEEEecCChhhH
Q 005021 633 AVRVVSFVSWELF 645 (719)
Q Consensus 633 ~v~VId~~~l~pl 645 (719)
.++||++..+.-|
T Consensus 654 ~vRvVnVvdl~rL 666 (793)
T COG3957 654 RVRVVNVVDLMRL 666 (793)
T ss_pred eEEEEEEecchhc
Confidence 9998888765554
No 45
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.87 E-value=3.4e-22 Score=201.69 Aligned_cols=137 Identities=26% Similarity=0.396 Sum_probs=117.2
Q ss_pred CCCCchHHHHHHHHhCCC-----CCCh--hHHh-hhhh---cCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHH
Q 005021 148 AGHGCMLQYALLHLAGYD-----SVQE--DDLK-NFRQ---WGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEK 216 (719)
Q Consensus 148 ~GH~~~~~Ya~l~l~G~~-----~~~~--~~l~-~~r~---~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~ 216 (719)
.||.++++|+.++|.|.. .++. +.|. .||| .+| +++||++ ++||++.++|+||+||+.|+|+|+
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg-~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~--- 76 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGG-IPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF--- 76 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCC-CCCCCcc-cCCCeeecccchhhHHHHHHHhhh---
Confidence 599999999999999931 0122 2353 4566 455 7899996 899999999999999999999984
Q ss_pred HhhcccCCCCCccCCcEEEEEEcccccChhHH---HHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHh
Q 005021 217 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIA---NEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFE 291 (719)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~---~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~ 291 (719)
++ .+.+|||++||||++||.+ ||+.+++...+|+||+.|+++|+++|++++.. +..+++.++|+
T Consensus 77 ------d~-----~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~ 145 (227)
T cd02011 77 ------DN-----PDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFR 145 (227)
T ss_pred ------cC-----CCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHH
Confidence 22 3679999999999999996 99999999999999999999999999999974 34688999999
Q ss_pred ccCceEEEE
Q 005021 292 GLGWHVIWV 300 (719)
Q Consensus 292 a~G~~~~~v 300 (719)
+|||++++|
T Consensus 146 ~yG~~~~~V 154 (227)
T cd02011 146 GYGYEPYFV 154 (227)
T ss_pred hCCCceEEE
Confidence 999999987
No 46
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.79 E-value=2.5e-18 Score=183.65 Aligned_cols=126 Identities=22% Similarity=0.249 Sum_probs=104.1
Q ss_pred CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 193 gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
++...+|++|++++.|+|+|+|.|+++. .+.+++|++|||+.++|.|||+||+|+.|+|| +||+|+||+|
T Consensus 130 ~~~~~~~iVg~Q~~~AaG~A~a~k~~~~---------~~~Va~~~~GDGat~qG~FhEalN~A~v~klP-vvf~ieNN~y 199 (358)
T COG1071 130 GFLGGSGIVGTQIPLAAGAALALKYRGT---------KDGVAVAFFGDGATNQGDFHEALNFAAVWKLP-VVFVIENNQY 199 (358)
T ss_pred ccCCCCceecccccHHHHHHHHHHHhCC---------CCcEEEEEecCCccccchHHHHHHHHHHhcCC-EEEEEecCCc
Confidence 6788999999999999999999999862 24599999999999999999999999999995 9999999999
Q ss_pred Ccccchhhhcc-hhHHHHHhccCceEEEE-----------------eeeecCCCccccc-c--ccccCCCCCHHHHH
Q 005021 273 SIDGDTEIAFT-ENVDKRFEGLGWHVIWV-----------------TTTIGFGSPNKAN-S--YSVHGSALGAKEVD 328 (719)
Q Consensus 273 sis~~~~~~~~-~~~~~~~~a~G~~~~~v-----------------~t~~g~g~~~~~~-~--~~~h~~~l~~~~~~ 328 (719)
+||.+...... +.++.|..+||++.++| +.+.|.||.+++- + ..-|+...++..|+
T Consensus 200 AiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YR 276 (358)
T COG1071 200 AISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYR 276 (358)
T ss_pred eeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccC
Confidence 99977664444 44566999999999999 5678999998863 3 34466553334454
No 47
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.70 E-value=1.1e-15 Score=169.50 Aligned_cols=144 Identities=19% Similarity=0.138 Sum_probs=107.8
Q ss_pred cEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCCC---------CCCCCCCCCccccCCCcchhHHHHHHHHH
Q 005021 143 RFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPG---------HPENFETPGIEVTTGPLGQGMANAVGLAL 213 (719)
Q Consensus 143 r~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g---------~p~~~~~pgi~~~tG~lG~gls~A~G~A~ 213 (719)
.+|++ .|.. .++.+..|. +.+++ +.++.|...| |.. ....++....|++|++++.|+|+|+
T Consensus 139 D~v~~-~yR~---h~~~La~G~---~~~~~--mael~Gk~~g~~~GrggsmH~~-~~~~~~~g~~g~lG~~lP~AvGaA~ 208 (433)
T PLN02374 139 DSVVS-TYRD---HVHALSKGV---PARAV--MSELFGKATGCCRGQGGSMHMF-SKEHNLLGGFAFIGEGIPVATGAAF 208 (433)
T ss_pred CEEEc-cCcC---hHHhhhcCC---CHHHH--HHHHcCCCCCCCCCCCCcCccC-chhhCCCCCceeccCchhHHHHHHH
Confidence 35665 6888 666666774 55553 2222222212 221 1123666788999999999999999
Q ss_pred HHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhc
Q 005021 214 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEG 292 (719)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a 292 (719)
|.|+++..++.. ..+.+|||++|||++++|.+||+||+|+.|+|+ +||||+||+|+|+.+.... ...+++++.++
T Consensus 209 A~k~~~~~~~~~---~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LP-vIfVV~NN~yaig~~~~~~t~~~dia~~A~a 284 (433)
T PLN02374 209 SSKYRREVLKEE---SCDDVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPEIWKKGPA 284 (433)
T ss_pred HHHHhhcccccc---CCCCEEEEEECCCccccChHHHHHHHHHHhCCC-EEEEEeCCCEeecceeeeccCCCCHHHHHHh
Confidence 999986433221 136899999999999999999999999999995 9999999999999876543 34579999999
Q ss_pred cCceEEEE
Q 005021 293 LGWHVIWV 300 (719)
Q Consensus 293 ~G~~~~~v 300 (719)
|||+.+.|
T Consensus 285 ~G~~~~~V 292 (433)
T PLN02374 285 FGMPGVHV 292 (433)
T ss_pred cCCcEEEE
Confidence 99999999
No 48
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.70 E-value=3.7e-16 Score=166.82 Aligned_cols=160 Identities=24% Similarity=0.295 Sum_probs=116.1
Q ss_pred CcEEEeCCCCchHHHHHHHHhCCCCCChhHH-hhh-hhcCCCCCC-CCCC--CCCCCccccCCCcchhHHHHHHHHHHHH
Q 005021 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDL-KNF-RQWGSKTPG-HPEN--FETPGIEVTTGPLGQGMANAVGLALAEK 216 (719)
Q Consensus 142 Dr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l-~~~-r~~~~~~~g-~p~~--~~~pgi~~~tG~lG~gls~A~G~A~A~~ 216 (719)
| +|++. |.+ ..+.+..|. +.+++ ..+ .+..+...| ||-. ....++...++++|.+++.|+|+|+|.|
T Consensus 47 D-~v~~~-yR~---~~~~la~g~---~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k 118 (300)
T PF00676_consen 47 D-WVFPY-YRD---HGHALARGI---DLEEIFAELLGKAKGHGGGRHPLHFSDKGLNILGASSPVGAQVPIAAGVALAIK 118 (300)
T ss_dssp S-EEEEC-STT---HHHHHHTTT----HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHH
T ss_pred C-EEEec-ccc---hhhhhhccc---cccchhHHhcCcccCCCCCccccccccccceeeeccccccccCccccchhHhhh
Confidence 5 45544 999 555566774 55443 222 222222211 2110 0112577889999999999999999999
Q ss_pred HhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh-hcchhHHHHHhccCc
Q 005021 217 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGW 295 (719)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~-~~~~~~~~~~~a~G~ 295 (719)
+.+ .+.+++|++|||++++|.+|||||+|+.|+|| +||||+||+|+||++... .....++++.++||+
T Consensus 119 ~~~----------~~~v~v~~~GDga~~qG~~~EalN~A~~~~lP-vifvveNN~~aist~~~~~~~~~~~~~~a~~~gi 187 (300)
T PF00676_consen 119 YRG----------KDGVVVCFFGDGATSQGDFHEALNLAALWKLP-VIFVVENNQYAISTPTEEQTASPDIADRAKGYGI 187 (300)
T ss_dssp HTT----------SSEEEEEEEETGGGGSHHHHHHHHHHHHTTTS-EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTS
T ss_pred hcC----------CceeEEEEecCcccccCccHHHHHHHhhccCC-eEEEEecCCcccccCccccccccchhhhhhccCC
Confidence 876 47899999999999999999999999999995 999999999999999875 445678999999999
Q ss_pred eEEEE-----------------eeeecCCCccccc-cccccCC
Q 005021 296 HVIWV-----------------TTTIGFGSPNKAN-SYSVHGS 320 (719)
Q Consensus 296 ~~~~v-----------------~t~~g~g~~~~~~-~~~~h~~ 320 (719)
+.+.| +.+.|+||.+.+. +++++++
T Consensus 188 p~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gH 230 (300)
T PF00676_consen 188 PGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGH 230 (300)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-S
T ss_pred cEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCC
Confidence 99999 4577889887753 4444443
No 49
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.68 E-value=2e-15 Score=163.67 Aligned_cols=146 Identities=18% Similarity=0.138 Sum_probs=109.1
Q ss_pred cEEEeCCCCchHHHHHHHHhCCCCCChhHH-hh-hhhcCCCCCC-----CCCCCCCCCccccCCCcchhHHHHHHHHHHH
Q 005021 143 RFVLSAGHGCMLQYALLHLAGYDSVQEDDL-KN-FRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLALAE 215 (719)
Q Consensus 143 r~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l-~~-~r~~~~~~~g-----~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~ 215 (719)
.+|++ .|.+ .++.+..|. +.+++ .. |.+..|.+.| |... ...++....|++|.+++.|+|+|+|.
T Consensus 73 D~~~~-~yR~---~~~~la~G~---~~~~~~ae~~g~~~g~~~Gr~gs~H~~~-~~~~~~~~~g~lG~~lp~AvGaa~A~ 144 (341)
T CHL00149 73 DYVCS-TYRD---HVHALSKGV---PPKNVMAELFGKETGCSRGRGGSMHIFS-APHNFLGGFAFIGEGIPIALGAAFQS 144 (341)
T ss_pred CEEEc-cccc---HHHHHHcCC---CHHHHHHHHcCCCCCCCCCCCCCccccc-hhcCccCCChhhhccHHHHHHHHHHH
Confidence 35554 5899 777777885 55553 11 2233332222 3321 11244567899999999999999999
Q ss_pred HHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh-hcchhHHHHHhccC
Q 005021 216 KHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLG 294 (719)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~-~~~~~~~~~~~a~G 294 (719)
|+++..++.. ..+++|+|++|||++++|.+||+||+|+.|+|+ +||||.||+|+|+.++.. ....++.++.++||
T Consensus 145 k~~~~~~~~~---~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G 220 (341)
T CHL00149 145 IYRQQVLKEV---QPLRVTACFFGDGTTNNGQFFECLNMAVLWKLP-IIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFG 220 (341)
T ss_pred HHhccccccC---CCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCC-EEEEEEeCCeeeecchhheeCCccHHHHHHhCC
Confidence 9886433221 136889999999999999999999999999995 999999999999988753 33578999999999
Q ss_pred ceEEEE
Q 005021 295 WHVIWV 300 (719)
Q Consensus 295 ~~~~~v 300 (719)
++.++|
T Consensus 221 ~~~~~V 226 (341)
T CHL00149 221 LPGIEV 226 (341)
T ss_pred CCEEEE
Confidence 999998
No 50
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.64 E-value=1.2e-14 Score=155.04 Aligned_cols=160 Identities=22% Similarity=0.196 Sum_probs=119.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCC-----
Q 005021 109 GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTP----- 183 (719)
Q Consensus 109 GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~----- 183 (719)
|+.-++.|---+.+++-.. ++| .| +|++ .|.+ +++.+..|. +..++ +.++.|...
T Consensus 26 ~~~~~~~GqEa~~vg~~~~---l~~-------~D-~~~~-~yR~---~~~~la~G~---~~~~~--~~e~~g~~~g~~~G 85 (293)
T cd02000 26 GFYHLSIGQEAVAVGVAAA---LRP-------GD-WVFP-TYRD---HGHALARGV---DLKEM--LAELFGKETGPCKG 85 (293)
T ss_pred cccCCCCChHHHHHHHHHH---CCC-------CC-EEEe-cchh---HHHHHHcCC---CHHHH--HHHHcCCCCCCCCC
Confidence 3344466644333444433 443 36 4554 6999 777777885 55554 233222221
Q ss_pred ----CCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcC
Q 005021 184 ----GHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLG 259 (719)
Q Consensus 184 ----g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~ 259 (719)
+|.. ...+++...+|++|.+++.|+|+|+|.++.+ .+.+++|++|||++++|.+||+||+|+.++
T Consensus 86 ~~g~~h~~-~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~----------~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~ 154 (293)
T cd02000 86 RGGSMHIG-DKEKNFFGGNGIVGGQVPLAAGAALALKYRG----------EDRVAVCFFGDGATNEGDFHEALNFAALWK 154 (293)
T ss_pred CCCCCCCC-chhcCccccccccccchhHHHHHHHHHHHhC----------CCCEEEEEeCCCccccchHHHHHHHHHhhC
Confidence 2332 2356899999999999999999999999875 378999999999999999999999999999
Q ss_pred CCcEEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEE
Q 005021 260 LGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 260 L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
|| +++||+||+|+++.+.... ...++.++.++||++.+.|
T Consensus 155 lP-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~V 195 (293)
T cd02000 155 LP-VIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRV 195 (293)
T ss_pred CC-EEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEE
Confidence 95 9999999999999887543 3567999999999999988
No 51
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.63 E-value=9.1e-15 Score=159.19 Aligned_cols=136 Identities=19% Similarity=0.165 Sum_probs=100.6
Q ss_pred cEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCCCCCC-------C-CCCCCccccCCCcchhHHHHHHHHHH
Q 005021 143 RFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPE-------N-FETPGIEVTTGPLGQGMANAVGLALA 214 (719)
Q Consensus 143 r~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g~p~-------~-~~~pgi~~~tG~lG~gls~A~G~A~A 214 (719)
.+|++ .|.. +++.+..|. +..++ +.++.|...|... . ...-++...+|++|+++++|+|+|+|
T Consensus 83 D~~~~-~yR~---hg~~la~G~---~~~~~--~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A 153 (362)
T PLN02269 83 DAIIT-AYRD---HCTHLGRGG---TVLEV--FAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFA 153 (362)
T ss_pred CEEEe-chhh---HHHHHHcCC---CHHHH--HHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHH
Confidence 35664 4888 777788885 55553 2232222222111 1 12347778999999999999999999
Q ss_pred HHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc-chhHHHHHhcc
Q 005021 215 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGL 293 (719)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~-~~~~~~~~~a~ 293 (719)
.|+++ .+.+++|++|||++++|.+|||||+|+.|+|+ +||||+||+|+|++++.... ...+.++ ++
T Consensus 154 ~k~~~----------~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lP-vvfvveNN~~aist~~~~~~~~~~~~~~--~~ 220 (362)
T PLN02269 154 QKYNK----------EENVAFALYGDGAANQGQLFEALNIAALWDLP-VIFVCENNHYGMGTAEWRAAKSPAYYKR--GD 220 (362)
T ss_pred HHHhC----------CCCeEEEEECCCCcccCHHHHHHHHhhccCcC-EEEEEeCCCEeccCchhhhccchHHHHh--hc
Confidence 99986 37899999999999999999999999999995 99999999999999876432 3344443 34
Q ss_pred CceEEEE
Q 005021 294 GWHVIWV 300 (719)
Q Consensus 294 G~~~~~v 300 (719)
+.+.+.|
T Consensus 221 ~~p~~~V 227 (362)
T PLN02269 221 YVPGLKV 227 (362)
T ss_pred CCCeEEE
Confidence 5666777
No 52
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.62 E-value=4e-14 Score=152.31 Aligned_cols=138 Identities=21% Similarity=0.190 Sum_probs=107.7
Q ss_pred EEEeCCCCchHHHHHHHHhCCCCCChhHHh-h-hhhcCCCCCC-----CCCCCCCCCccccCCCcchhHHHHHHHHHHHH
Q 005021 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLK-N-FRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLALAEK 216 (719)
Q Consensus 144 ~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~-~-~r~~~~~~~g-----~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~ 216 (719)
+|++ .|.. .++.+..|. +.+++. . +.+..|.+.| |.. ....++....|++|.+++.|+|+|+|.+
T Consensus 56 ~~~~-~yR~---~~~~la~G~---~~~~~~~~~~g~~~g~~~Gr~g~~h~~-~~~~~~~~~~g~~G~~lp~AiGaa~A~~ 127 (315)
T TIGR03182 56 YVIT-SYRD---HGHALARGV---PPKEVMAELTGRATGCSKGKGGSMHMF-DREKNFYGGHGIVGAQVPLATGLAFANK 127 (315)
T ss_pred EEEe-chhh---HHHHHHcCC---CHHHHHHHHcCCCCCCCCCCCCCCCcC-chhhCcccCcCcccccccHHHHHHHHHH
Confidence 6665 4888 777777885 555542 1 2222222222 222 1224677788999999999999999999
Q ss_pred HhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh-hcchhHHHHHhccCc
Q 005021 217 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGW 295 (719)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~-~~~~~~~~~~~a~G~ 295 (719)
+.+ .+.+|+|++|||++++|.+||+||+|+.++|+ +++||.||+|++++++.. ....++.++.++||+
T Consensus 128 ~~~----------~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lP-vi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~ 196 (315)
T TIGR03182 128 YRG----------NDNVTACFFGDGAANQGQFYESFNMAALWKLP-VIFVIENNLYAMGTSVERSSSVTDLYKRGESFGI 196 (315)
T ss_pred HhC----------CCCEEEEEeCCCcccccHHHHHHHHhhccCcC-EEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCC
Confidence 875 37899999999999999999999999999995 999999999999988764 335689999999999
Q ss_pred eEEEE
Q 005021 296 HVIWV 300 (719)
Q Consensus 296 ~~~~v 300 (719)
+.+.|
T Consensus 197 ~~~~V 201 (315)
T TIGR03182 197 PGERV 201 (315)
T ss_pred CEEEE
Confidence 99998
No 53
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.61 E-value=2e-16 Score=147.28 Aligned_cols=110 Identities=27% Similarity=0.385 Sum_probs=91.5
Q ss_pred ccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc
Q 005021 593 GAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 593 G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
|++.+.++ |.|++||+||+|++.|++|+++|+++|++++|||+++++|||++.+. +.+.+.+ . ++|+|++..
T Consensus 1 Gk~~~~~~----g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~--~~~~~~~-~-vvvvee~~~ 72 (124)
T PF02780_consen 1 GKAEVLRE----GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALL--ESLKKTG-R-VVVVEEHYK 72 (124)
T ss_dssp TEEEEEES----SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHH--HHSHHHH-H-HHHSETCES
T ss_pred CEEEEEeC----CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchH--HHHHHhc-c-ccccccccc
Confidence 67777876 79999999999999999999999999999999999999999999874 2333332 3 599999975
Q ss_pred -cCchhh---------hc---CCceEEee-CcCCCCCCHHHHHHHhCCCHHHH
Q 005021 673 -FGWEKI---------VG---SKGKAIGI-DRFGASAPAGKIYKEFGITAEAV 711 (719)
Q Consensus 673 -~G~~~~---------~~---~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I 711 (719)
.|+++. .. .++.++|+ |.|+++| .+++++.+|+|+++|
T Consensus 73 ~gg~g~~i~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 73 IGGLGSAIAEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp EEEEHSSHHHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred cccHHHHHHHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 456542 12 35678999 8999999 999999999999987
No 54
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.59 E-value=7.1e-14 Score=151.97 Aligned_cols=138 Identities=22% Similarity=0.240 Sum_probs=109.2
Q ss_pred CCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhc
Q 005021 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAA 220 (719)
Q Consensus 141 rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~ 220 (719)
.| +|++ .|.+ +++.+..|. +..++ +.+..|...|-.. ....++...+|++|.|++.|+|+|+|.|+.+
T Consensus 75 ~D-~~~~-~yR~---h~~~l~~G~---~~~~~--~ae~~g~~~g~~~-~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~- 142 (341)
T TIGR03181 75 DD-WVFP-SYRD---HAAMLARGV---PLVEI--LLYWRGDERGSWD-PEGVNILPPNIPIGTQYLHAAGVAYALKLRG- 142 (341)
T ss_pred CC-EEEc-chhh---HHHHHHcCC---CHHHH--HHHhcCcCcCCCC-chhcCccCCCchHhcchhHHHhHHHHHHhhC-
Confidence 35 4664 5999 777778885 55553 2333333333211 1235778899999999999999999999875
Q ss_pred ccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh-hcchhHHHHHhccCceEEE
Q 005021 221 RYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGWHVIW 299 (719)
Q Consensus 221 ~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~-~~~~~~~~~~~a~G~~~~~ 299 (719)
.+.+|+|++|||++++|.+||+||+|+.|+|+ +|+||.||++.++.+... ....++.++.++|||+.+.
T Consensus 143 ---------~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LP-vi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 212 (341)
T TIGR03181 143 ---------EDNVAVTYFGDGGTSEGDFYEALNFAGVFKAP-VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQ 212 (341)
T ss_pred ---------CCCEEEEEecCCccccChHHHHHHHHhccCCC-EEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEE
Confidence 37899999999999999999999999999995 999999999999887653 3356799999999999999
Q ss_pred E
Q 005021 300 V 300 (719)
Q Consensus 300 v 300 (719)
|
T Consensus 213 V 213 (341)
T TIGR03181 213 V 213 (341)
T ss_pred E
Confidence 8
No 55
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.56 E-value=1.5e-14 Score=152.60 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=134.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCc-EEEeCCCCchHHHHHHHHhCCC-------CCChhHHhhh-h
Q 005021 106 ANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHLAGYD-------SVQEDDLKNF-R 176 (719)
Q Consensus 106 ~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr-~Ils~GH~~~~~Ya~l~l~G~~-------~~~~~~l~~~-r 176 (719)
.--||.|++.|..=+.+.|-+..=++ +.|. +|...||+.|++.+..+|.|-. +.+.+.|..| |
T Consensus 45 rllGHWGt~PGlnfiyahlNrlI~~~--------~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~ 116 (379)
T PF09364_consen 45 RLLGHWGTSPGLNFIYAHLNRLIRKY--------DLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFR 116 (379)
T ss_dssp S--S-TTTHHHHHHHHHHHHHHHHHH--------TB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHhc--------CCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHH
Confidence 45899999988876655555443334 3566 6888999999999999999921 1244555543 5
Q ss_pred hcCCCC---CCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH---HHH
Q 005021 177 QWGSKT---PGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI---ANE 250 (719)
Q Consensus 177 ~~~~~~---~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~---~~E 250 (719)
|+ |.- ++|..+ ++||-....|.||.+++.|.|+++- +| |-+++|+|||||..+|- .|-
T Consensus 117 ~F-S~PgGipSH~~p-~tPGsIhEGGELGYaLshA~GA~~D---------nP-----dliv~~vvGDGEaETGplA~sWh 180 (379)
T PF09364_consen 117 QF-SFPGGIPSHVSP-ETPGSIHEGGELGYALSHAFGAVFD---------NP-----DLIVACVVGDGEAETGPLAASWH 180 (379)
T ss_dssp HB-TSTTSB-SSS-T-TSTT-S---SSTS-HHHHHHHHHTT----------T-----T-EEEEEEETTGGGSHHHHHHGG
T ss_pred hC-CCCCCCccccCc-CCCCccCcCcchhhHHHHHhhcccC---------CC-----CeEEEEEecCCcccCCccccccc
Confidence 55 332 345554 7899999999999999999999973 33 78999999999999995 454
Q ss_pred HHHHhhhcCCCcEEEEEeCCCCCcccchh--hhcchhHHHHHhccCceEEEE----------------------------
Q 005021 251 ASSLAGHLGLGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWV---------------------------- 300 (719)
Q Consensus 251 Aln~A~~~~L~nli~ivddN~~sis~~~~--~~~~~~~~~~~~a~G~~~~~v---------------------------- 300 (719)
+-.+..-..-..|+-|+.-|++.|+.++- .+..+++.+.|+++||+.+.|
T Consensus 181 ~~kflnP~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~ 260 (379)
T PF09364_consen 181 SNKFLNPATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQK 260 (379)
T ss_dssp GGGSS-TTTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeCcccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333224699999999999999984 456778999999999999988
Q ss_pred ------------------eeeecCCCccc------cccccccCCCCC-----HHHHHHHHHHcC
Q 005021 301 ------------------TTTIGFGSPNK------ANSYSVHGSALG-----AKEVDATRKNLG 335 (719)
Q Consensus 301 ------------------~t~~g~g~~~~------~~~~~~h~~~l~-----~~~~~~~~~~l~ 335 (719)
+|.||++-+.. +++.+.|..|+. +++++.+.+.+.
T Consensus 261 ~Ar~~~~~~~prwPmivlRtPKGWtgP~~vdG~~iEGt~raHQVPl~~~~~~~~~l~~Le~Wl~ 324 (379)
T PF09364_consen 261 AARSGNPAYRPRWPMIVLRTPKGWTGPKEVDGKPIEGTFRAHQVPLPDVRTDPEHLRLLEDWLR 324 (379)
T ss_dssp HHTT--SS----EEEEEEE--TTTTS-SEETTEE-TTSGGGSS-SSTTTTTSHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCcEEEEECCcccCCccccCCccccCcceeeeccccccCCCHHHHHHHHHHHH
Confidence 78889886643 567788888763 345555555443
No 56
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.56 E-value=1.4e-14 Score=149.53 Aligned_cols=121 Identities=22% Similarity=0.278 Sum_probs=100.1
Q ss_pred CCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCC
Q 005021 191 TPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270 (719)
Q Consensus 191 ~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN 270 (719)
.+......|.+|.+++++.|+|+|.||++ .+.+.+++.|||+.++|++|||+|+|..|+|| +||||+||
T Consensus 157 ~k~FyGGnGIVGAQiPLGaGia~A~kY~~----------~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP-~IFvCENN 225 (394)
T KOG0225|consen 157 AKNFYGGNGIVGAQIPLGAGIAFAQKYNR----------EDAVCFALYGDGAANQGQVFEAFNMAALWKLP-VIFVCENN 225 (394)
T ss_pred cccccCccceeccCCCccccHHHHHHhcc----------CCceEEEEeccccccchhHHHHhhHHHHhCCC-EEEEEccC
Confidence 44567889999999999999999999976 37899999999999999999999999999995 99999999
Q ss_pred CCCcccchhh-hcchhHHHHHhccCceEEEE-----------------eeeecCCCcccc-ccccccCCCCCH
Q 005021 271 HISIDGDTEI-AFTENVDKRFEGLGWHVIWV-----------------TTTIGFGSPNKA-NSYSVHGSALGA 324 (719)
Q Consensus 271 ~~sis~~~~~-~~~~~~~~~~~a~G~~~~~v-----------------~t~~g~g~~~~~-~~~~~h~~~l~~ 324 (719)
+|.+.++... ....+.++|- .| ++-++| .++.|+||..++ +++++||+.+.+
T Consensus 226 ~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSD 296 (394)
T KOG0225|consen 226 HYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSD 296 (394)
T ss_pred CCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCC
Confidence 9999988764 3455677766 33 444555 467899998776 578888886643
No 57
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.42 E-value=1.1e-12 Score=136.31 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=87.3
Q ss_pred CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCC--cEEEEEeC
Q 005021 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDD 269 (719)
Q Consensus 193 gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~--nli~ivdd 269 (719)
.+....+|+|.++++|+|.|+|.++++.. .+..+..++|++|||++ .+|.+||+||+|+.|+|+ ++|+||+|
T Consensus 107 ~l~~npS~l~~~~pva~G~A~A~k~~~~~-----~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveN 181 (265)
T cd02016 107 SLAPNPSHLEAVNPVVMGKTRAKQDYRGD-----GERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVN 181 (265)
T ss_pred EecCCCcccccccCeehhHHHHHHHhcCC-----ccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEe
Confidence 34556789999999999999999998521 01136789999999996 699999999999999995 49999999
Q ss_pred CCCCcccchhhh-cchhHHHHHhccCceEEEE
Q 005021 270 NHISIDGDTEIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 270 N~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
|+|+++++.... ....+.++.++||.+++.|
T Consensus 182 Nq~g~sT~~~~~~~~~~~~~~a~~~gip~~~V 213 (265)
T cd02016 182 NQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHV 213 (265)
T ss_pred CCEEEEecHHHhcccccHHHHHeecCCCEEEE
Confidence 999999998654 4566899999999999998
No 58
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.34 E-value=3.3e-11 Score=140.68 Aligned_cols=231 Identities=18% Similarity=0.162 Sum_probs=162.7
Q ss_pred ccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhh--hcCCEEEEEecCCCccCCCCCCCCChhhhhHH
Q 005021 461 RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISAL--CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 538 (719)
Q Consensus 461 d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~--~~~pV~~v~~~~g~g~g~dG~THq~~edia~l 538 (719)
.....|..++.+|.|-|..| .|.+++|=..=+.++.|++...++ ...|++++.. ++. | -++|+....|..+.
T Consensus 50 ~~~~~E~~a~~~~~GAs~aG--~ra~t~ts~~Gl~~~~e~l~~~~~~g~~~~iV~~~~-~~~--g-p~~~~~~q~d~~~~ 123 (595)
T TIGR03336 50 EWSVNEKVAVEVAAGAAWSG--LRAFCTMKHVGLNVAADPLMTLAYTGVKGGLVVVVA-DDP--S-MHSSQNEQDTRHYA 123 (595)
T ss_pred EECcCHHHHHHHHHHHHhcC--cceEEEccCCchhhhHHHhhhhhhhcCcCceEEEEc-cCC--C-CccchhhHhHHHHH
Confidence 33458999999999999999 599999877778899999877654 3677777763 343 3 24788778887766
Q ss_pred cCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC--CCCCC-C-------Cc--ccc-c-----
Q 005021 539 RAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL--PHLAG-T-------SI--DGV-E----- 591 (719)
Q Consensus 539 r~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r------~~~--~~~~~-~-------~~--~~~-~----- 591 (719)
+. -++.|+.|+|.+|+..+...|++ +..-|+++++.. +.+ +..+. . +. ... +
T Consensus 124 ~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (595)
T TIGR03336 124 KF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARV 202 (595)
T ss_pred Hh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHH
Confidence 65 47789999999999998887763 257899998632 111 00000 0 00 000 0
Q ss_pred ---------------ccc--EEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhh
Q 005021 592 ---------------KGA--YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 654 (719)
Q Consensus 592 ---------------~G~--~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~ 654 (719)
... +.... +++.|++||++|+++..+++++++| |+++.|+++++++|||++.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~--- 273 (595)
T TIGR03336 203 RHKKLLSKQHKLREELNESPLNRLE---INGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVE--- 273 (595)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceec---cCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHH---
Confidence 000 11111 1257999999999999999987765 999999999999999998764
Q ss_pred hhccCCCceEEEEccccccCchhhh----c---CCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 005021 655 SVLPAAVSARVSIEAGSTFGWEKIV----G---SKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 717 (719)
Q Consensus 655 sv~~~~~~~vvvvE~~~~~G~~~~~----~---~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~ 717 (719)
.+++.. +.+||+|++.. +++..+ . .++.++|+ |.|++ +..+||++.|.+++++
T Consensus 274 ~~~~~~-~~vivvEe~~~-~~~~~~~~~~~~~~~~v~~~G~~d~fi~--------~~~~Ld~~~i~~~i~~ 334 (595)
T TIGR03336 274 EFLSGV-EEVLVVEELEP-VVEEQVKALAGTAGLNIKVHGKEDGFLP--------REGELNPDIVVNALAK 334 (595)
T ss_pred HHHhcC-CeEEEEeCCcc-HHHHHHHHHHHhcCCCeEEecccCCccC--------cccCcCHHHHHHHHHH
Confidence 334333 34799999983 443321 1 14578899 78887 5679999999999875
No 59
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.33 E-value=1.3e-12 Score=133.65 Aligned_cols=96 Identities=26% Similarity=0.281 Sum_probs=84.8
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 195 ~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
...+.++.++|++|+|.|+|.|+... .+..+||++|||+.+||.+|-|+|+|+..+- ++||||-||+|+|
T Consensus 189 ~tissplatqlpqAvGaaYa~k~~~~---------nnac~V~yfGdG~aSEGD~HA~~NfAAtle~-Pvif~CRNNG~AI 258 (432)
T KOG1182|consen 189 VTISSPLATQLPQAVGAAYALKMRKK---------NNACAVTYFGDGAASEGDAHAAFNFAATLEC-PVIFFCRNNGWAI 258 (432)
T ss_pred EEecchhhhccchhhhhhhhhhhccc---------CCeEEEEEecCCcccccchhhhhhHHHHhCC-CEEEEEcCCCeee
Confidence 34567899999999999999997642 3579999999999999999999999999996 5999999999999
Q ss_pred ccchhh-hcchhHHHHHhccCceEEEE
Q 005021 275 DGDTEI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 275 s~~~~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
|++++. +...-+..+-.+||+..|+|
T Consensus 259 STptseQyr~DGIa~kG~aYGi~sIRV 285 (432)
T KOG1182|consen 259 STPTSEQYRGDGIAVKGPAYGIRSIRV 285 (432)
T ss_pred ccccHHHhcCCceEEeccccceEEEEe
Confidence 999975 44566888889999999999
No 60
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.29 E-value=1.3e-10 Score=126.92 Aligned_cols=202 Identities=16% Similarity=0.119 Sum_probs=146.3
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
..|+. .-.|..++++|.|.|..| .|.++.|=...+.++++.|-..+...+|++++.. .+.+.+ -|.|+....|+-
T Consensus 49 ~~~vq-~E~E~aA~~~a~GAs~aG--~Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v-~R~~p~-~g~t~~eq~D~~ 123 (352)
T PRK07119 49 GVFVQ-AESEVAAINMVYGAAATG--KRVMTSSSSPGISLKQEGISYLAGAELPCVIVNI-MRGGPG-LGNIQPSQGDYF 123 (352)
T ss_pred CEEEe-eCcHHHHHHHHHHHHhhC--CCEEeecCcchHHHHHHHHHHHHHccCCEEEEEe-ccCCCC-CCCCcchhHHHH
Confidence 44555 678999999999999999 5999999899999999999999999999777763 344433 345777777876
Q ss_pred HHcC-----CCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC------CCC--CC---CCCCCcccccccc---
Q 005021 537 SFRA-----MPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR------QKL--PH---LAGTSIDGVEKGA--- 594 (719)
Q Consensus 537 ~lr~-----iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~r------~~~--~~---~~~~~~~~~~~G~--- 594 (719)
+.+. -=++.|+.|+|.+|+..+...|.+- ..-|++++... +.+ +. +..........|.
T Consensus 124 ~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 203 (352)
T PRK07119 124 QAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGTKGR 203 (352)
T ss_pred HHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccCCCCCC
Confidence 6532 2248899999999999988877632 46799998632 111 11 0000000001110
Q ss_pred -------------------------E----------EEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEec
Q 005021 595 -------------------------Y----------IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 639 (719)
Q Consensus 595 -------------------------~----------~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~ 639 (719)
+ ..... ++.|++||++|+++..|++|++.|+++|+++.||++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~---~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~ 280 (352)
T PRK07119 204 RKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNT---EDAELVLVAYGTSARIAKSAVDMAREEGIKVGLFRP 280 (352)
T ss_pred ceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecC---CCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEee
Confidence 0 11111 257999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhhhhhccCCCceEEEEccc
Q 005021 640 VSWELFDEQSDAYKESVLPAAVSARVSIEAG 670 (719)
Q Consensus 640 ~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~ 670 (719)
++++|||.+.+. + .++.. +.++|+|..
T Consensus 281 ~~l~Pfp~~~i~--~-~l~~~-k~VivvE~n 307 (352)
T PRK07119 281 ITLWPFPEKALE--E-LADKG-KGFLSVEMS 307 (352)
T ss_pred ceecCCCHHHHH--H-HHhCC-CEEEEEeCC
Confidence 999999998764 2 33333 346999998
No 61
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.18 E-value=1.5e-10 Score=111.18 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=98.3
Q ss_pred CCCCCccccccccchHHHHHHHHHhcCCCCccEEEe-hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCCh
Q 005021 454 TPEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT-FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 532 (719)
Q Consensus 454 ~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~-y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ 532 (719)
+.|++.+..++.|++++++|.|+|+.|. +|++.+ +.+|+.+++++|...+..++||+++.++.+. .+.++.+||.+
T Consensus 32 ~~~~~~~~~~~~E~~a~~~A~G~a~~~~--~~v~~~~~gpg~~~~~~~l~~a~~~~~Pvl~i~~~~~~-~~~~~~~~q~~ 108 (154)
T cd06586 32 EGDKRIIDTVIHELGAAGAAAGYARAGG--PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGI-SAQAKQTFQSM 108 (154)
T ss_pred ccCCceEEeeCCHHHHHHHHHHHHHhhC--CEEEEEcCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCh-hhhccCccccc
Confidence 4689999999999999999999999994 888764 6999999999999888889999999854443 34457789999
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHH---HHHHcCCCcEEEEEcC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYK---VAVANRKRPSILALSR 576 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~---~a~~~~~~P~~irl~r 576 (719)
+++++++.+|++.+..|++.++...+.+ .+.. ..+|++|++|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~-~~gPv~l~ip~ 154 (154)
T cd06586 109 FDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYA-SQGPVVVRLPR 154 (154)
T ss_pred CHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEccC
Confidence 9999999999999999988766654443 2333 47899999874
No 62
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.17 E-value=1.1e-09 Score=120.49 Aligned_cols=205 Identities=20% Similarity=0.205 Sum_probs=146.1
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
..|+.+- .|..++++|.|.|..|. |.++.|=+.=+.+|.+++-..+...+|++++.. ++.|.+..-+|+....|+-
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG~--Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~-~R~gp~tg~p~~~~q~D~~ 124 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAGA--KAMTATSGPGFSLMQENIGYAAMTETPCVIVNV-QRGGPSTGQPTKPAQGDMM 124 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhCC--CeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEe-ecCCCCCCCCCCcCcHHHH
Confidence 3455655 89999999999999994 999998888888999999888888999888763 4555333447887777876
Q ss_pred HHc-----CCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC------CCC--CC---CC-------C------
Q 005021 537 SFR-----AMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR------QKL--PH---LA-------G------ 584 (719)
Q Consensus 537 ~lr-----~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~r------~~~--~~---~~-------~------ 584 (719)
..+ .+| ..|+.|+|.+|+..+...|.+- ..-|++++... ..+ +. +. .
T Consensus 125 ~~~~~~hgd~~-~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 203 (376)
T PRK08659 125 QARWGTHGDHP-IIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAY 203 (376)
T ss_pred HHhcccCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCcccc
Confidence 666 333 4799999999999988877632 46799998631 111 00 00 0
Q ss_pred CCc----cccc----cc--cE---------------------------------------EEecCCCCCCCCEEEEEeCH
Q 005021 585 TSI----DGVE----KG--AY---------------------------------------IISDNSSGNKPDVILIGTGS 615 (719)
Q Consensus 585 ~~~----~~~~----~G--~~---------------------------------------~i~~~~~~~g~dvtIva~G~ 615 (719)
... ..++ .| .. ...+.-...+.|++||++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs 283 (376)
T PRK08659 204 KPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGS 283 (376)
T ss_pred CCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCc
Confidence 000 0000 01 11 00000001257899999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccc
Q 005021 616 ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 670 (719)
Q Consensus 616 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~ 670 (719)
+...+++|++.|+++|+++.++++++++||+.+.+. ..++.. +.|+|+|++
T Consensus 284 ~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~---~~~~~~-k~VivvEe~ 334 (376)
T PRK08659 284 VARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIR---ELAKKV-KAIVVPEMN 334 (376)
T ss_pred cHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHH---HHHhcC-CEEEEEeCC
Confidence 999999999999999999999999999999998654 344433 447999999
No 63
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.09 E-value=2.4e-10 Score=111.41 Aligned_cols=91 Identities=22% Similarity=0.278 Sum_probs=68.6
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCC
Q 005021 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 273 (719)
Q Consensus 194 i~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~s 273 (719)
+....|++|.+++.|+|++++.+ +.+|||++|||+++. .+++++.|..++++-+++|+||+.+.
T Consensus 41 ~~~~~g~~G~~~~~a~Gaa~a~~--------------~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~ 104 (168)
T cd00568 41 TSTGFGAMGYGLPAAIGAALAAP--------------DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYG 104 (168)
T ss_pred eCCCchhhhhhHHHHHHHHHhCC--------------CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccH
Confidence 34567999999999999999853 568999999999998 67999999999986444444544444
Q ss_pred cccchh----------h-hcchhHHHHHhccCceEEEE
Q 005021 274 IDGDTE----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 274 is~~~~----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
+..... . ....++.+.++++||++++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v 142 (168)
T cd00568 105 TIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRV 142 (168)
T ss_pred HHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEE
Confidence 433221 1 12347899999999998775
No 64
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.07 E-value=5.7e-09 Score=114.73 Aligned_cols=199 Identities=17% Similarity=0.111 Sum_probs=143.9
Q ss_pred ccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHc-----
Q 005021 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR----- 539 (719)
Q Consensus 465 aE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr----- 539 (719)
.|..++++|.|.|..| .|.++.|=..=+.+|.++|-..+...+|++++. ..+.|.+..-||.....|+...+
T Consensus 55 ~E~aA~~~a~GAs~aG--~Ra~taTSg~G~~lm~E~~~~a~~~e~P~V~~~-~~R~GpstG~p~~~~q~D~~~~~~~~hg 131 (375)
T PRK09627 55 DEISGISVALGASMSG--VKSMTASSGPGISLKAEQIGLGFIAEIPLVIVN-VMRGGPSTGLPTRVAQGDVNQAKNPTHG 131 (375)
T ss_pred CHHHHHHHHHHHHhhC--CCEEeecCCchHHHHhhHHHHHHhccCCEEEEE-eccCCCcCCCCCccchHHHHHHhcCCCC
Confidence 8999999999999999 599999888888899999998999999988765 35555443458888788887777
Q ss_pred CCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC--CC---CC----------CC--Ccccccc-
Q 005021 540 AMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL--PH---LA----------GT--SIDGVEK- 592 (719)
Q Consensus 540 ~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r------~~~--~~---~~----------~~--~~~~~~~- 592 (719)
-.|.+ |++|+|.+|+..+...|.+ +..-|++++... ..+ +. +. .. .......
T Consensus 132 d~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (375)
T PRK09627 132 DFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVA 210 (375)
T ss_pred CcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccccCCccC
Confidence 66777 9999999999998887763 246799998632 111 00 10 00 0000000
Q ss_pred -------------ccEE------------------------------------E--ecCCCCCCCCEEEEEeCHhHHHHH
Q 005021 593 -------------GAYI------------------------------------I--SDNSSGNKPDVILIGTGSELEIAA 621 (719)
Q Consensus 593 -------------G~~~------------------------------------i--~~~~~~~g~dvtIva~G~~v~~al 621 (719)
+.+. + ....+.+..|++||++|+....+.
T Consensus 211 ~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~k 290 (375)
T PRK09627 211 QDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAK 290 (375)
T ss_pred CCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHH
Confidence 0000 0 000001246899999999999999
Q ss_pred HHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccc
Q 005021 622 KAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGS 671 (719)
Q Consensus 622 ~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~ 671 (719)
+|.+.|+++|+++.++.++++.||..+.+. ..++.. +.++|+|.+.
T Consensus 291 eAv~~lr~~G~kvg~l~~~~~~PfP~~~i~---~~l~~~-k~viVvE~n~ 336 (375)
T PRK09627 291 EAIKRLREEGIKVGLFRPITLWPSPAKKLK---EIGDKF-EKILVIELNM 336 (375)
T ss_pred HHHHHHHhcCCeEEEEEeCeEECCCHHHHH---HHHhcC-CEEEEEcCCh
Confidence 999999999999999999999999987553 344433 3469999986
No 65
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.03 E-value=1.1e-08 Score=113.95 Aligned_cols=201 Identities=18% Similarity=0.139 Sum_probs=145.5
Q ss_pred ccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCe
Q 005021 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNI 544 (719)
Q Consensus 465 aE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl 544 (719)
.|..+++++.|.|..| .|.+++|=+.=+.++.|.|...+...+|++++.. .|.+.+ .-++|....|+...| --++
T Consensus 64 ~E~~A~~~~~GAs~aG--aRa~TaTS~~Gl~lm~E~l~~aa~~~~P~V~~~~-~R~~~~-~~~i~~d~~D~~~~r-~~g~ 138 (407)
T PRK09622 64 SEHAAMSACVGAAAAG--GRVATATSSQGLALMVEVLYQASGMRLPIVLNLV-NRALAA-PLNVNGDHSDMYLSR-DSGW 138 (407)
T ss_pred cHHHHHHHHHHHHhhC--cCEEeecCcchHHHHhhHHHHHHHhhCCEEEEEe-ccccCC-CcCCCchHHHHHHHh-cCCe
Confidence 8999999999999999 4999988888888999999999999999777763 343322 367788788877766 4679
Q ss_pred EEEeeCCHHHHHHHHHHHHHc---C--CCcEEEEEcC-------CCCCCCCCC----------Cc-------ccccccc-
Q 005021 545 LMLRPADGNETAGAYKVAVAN---R--KRPSILALSR-------QKLPHLAGT----------SI-------DGVEKGA- 594 (719)
Q Consensus 545 ~V~~P~d~~e~~~~l~~a~~~---~--~~P~~irl~r-------~~~~~~~~~----------~~-------~~~~~G~- 594 (719)
.+++|+|.+|+..+...|.+- . .-|+++++.- +.+.....+ +. .+...|.
T Consensus 139 ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 218 (407)
T PRK09622 139 ISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQ 218 (407)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCC
Confidence 999999999999998887642 2 5799998632 111100000 00 0000010
Q ss_pred --------------------------------------EEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEE
Q 005021 595 --------------------------------------YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 636 (719)
Q Consensus 595 --------------------------------------~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~V 636 (719)
|...+..+.++.|++||++|+++..+++|++.|+++|+++.|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgv 298 (407)
T PRK09622 219 TEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGV 298 (407)
T ss_pred CCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEE
Confidence 000010001257899999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC
Q 005021 637 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 674 (719)
Q Consensus 637 Id~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G 674 (719)
|++++++|||.+.+. .+++.. +.++|+|++...|
T Consensus 299 i~~r~~~Pfp~~~l~---~~l~~~-k~VvVvE~~~~~G 332 (407)
T PRK09622 299 ATIRVLRPFPYERLG---QALKNL-KALAILDRSSPAG 332 (407)
T ss_pred EEeeEhhhCCHHHHH---HHHhcC-CEEEEEeCCCCCC
Confidence 999999999998664 334433 3479999997755
No 66
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.01 E-value=1.2e-07 Score=110.99 Aligned_cols=537 Identities=17% Similarity=0.188 Sum_probs=283.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCC---
Q 005021 107 NSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTP--- 183 (719)
Q Consensus 107 ~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~--- 183 (719)
-.|+---+|=..|-++.|...++.--.+ ..-|-+++...|..-+ -.+.-..|. +..+ -|+.+.|...
T Consensus 516 yvGqkRFslEG~Es~iplld~~~~~aa~----~~l~evvigm~HRGRL-NVLani~gK---~y~q--iF~EFegn~dp~~ 585 (1228)
T PRK12270 516 YVGQKRFSLEGGESLIPLLDAVLDQAAE----HGLDEVVIGMAHRGRL-NVLANIVGK---PYSQ--IFREFEGNLDPRS 585 (1228)
T ss_pred cccceeeeecchhhHHHHHHHHHHHHHh----cCCceEEecccccchH-HHHHHHhcC---CHHH--HHHHhcCCCCccc
Confidence 4566665666666666666555542221 2567899988888622 222334453 3333 2444433221
Q ss_pred --CCCCCC---CCCCcc-------------ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccc-cC
Q 005021 184 --GHPENF---ETPGIE-------------VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC-QM 244 (719)
Q Consensus 184 --g~p~~~---~~pgi~-------------~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~-~~ 244 (719)
|--+.. ...|.. ..-.||=.==+..-|++.|..-.- ++. .......-+++-||++ ..
T Consensus 586 ~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l---~~g-~~~~~vlpi~~hGdaafag 661 (1228)
T PRK12270 586 AQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRL---DKG-EEGFTVLPILLHGDAAFAG 661 (1228)
T ss_pred cCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhh---ccc-ccCCceeEEEEeccccccC
Confidence 111100 011111 112233333366778888765321 211 1112456788999999 57
Q ss_pred hhHHHHHHHHhhhcCCC--cEEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEEe-----------------eee
Q 005021 245 EGIANEASSLAGHLGLG--KLIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWVT-----------------TTI 304 (719)
Q Consensus 245 eG~~~EAln~A~~~~L~--nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v~-----------------t~~ 304 (719)
+|+++|+||++..++++ -.|.||.||++...+..... ...-..+..++++.+++.|+ -..
T Consensus 662 QGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~ 741 (1228)
T PRK12270 662 QGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQR 741 (1228)
T ss_pred CchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999973 38999999999998776532 22234455567888888881 112
Q ss_pred cCCCcccc-ccccccCC------CCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHH-HhhcchhHHHH-----------H
Q 005021 305 GFGSPNKA-NSYSVHGS------ALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAE-----------W 365 (719)
Q Consensus 305 g~g~~~~~-~~~~~h~~------~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~~~~~~-----------~ 365 (719)
+++..+++ ..+++||+ .+.+.....++++... +.+.|.+ +..+|-.-+++ +
T Consensus 742 f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~s----------vrk~yte~Ligrgdit~ee~e~~l~dy~~~L 811 (1228)
T PRK12270 742 FHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRS----------VRKLYTEALIGRGDITVEEAEQALRDYQGQL 811 (1228)
T ss_pred cCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcch----------HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 23333332 24555655 2332222222222110 2233332 22222111111 1
Q ss_pred HHHHhhhhh--cCchh-hh-------------------hhhhhhc--CCCCCcccccCCCCCCC-CCcchH-H-----HH
Q 005021 366 NAKFAEYEK--KYPEE-AA-------------------EFKSISS--GQLPAGWEKALPTYTPE-SPAEAT-R-----NL 414 (719)
Q Consensus 366 ~~~~~~~~~--~~p~~-~~-------------------~~~~~~~--g~~p~~~~~~~~~~~~~-~~~~s~-r-----~a 414 (719)
.+.+.+-++ +.|.. .. .+..+.. -.+|+.|+. .|+...- .....| + =+
T Consensus 812 e~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~-Hpkl~~~l~~R~~m~~~g~iDWa 890 (1228)
T PRK12270 812 ERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTV-HPKLKPLLEKRREMAREGGIDWA 890 (1228)
T ss_pred HHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCcc-ChhhHHHHHHHHHHHhcCCccHH
Confidence 111111110 01100 00 0000000 012333321 1111000 000000 0 03
Q ss_pred HHHHH--HHHHhhCCceEEEecCCCCCccccc-------------cccccCcccCCCCCccccccccchHHHHHHHHHhc
Q 005021 415 SQTCL--NALAKTLPGLLGGSADLASSNMTLL-------------KMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 479 (719)
Q Consensus 415 ~~~~L--~~l~~~dp~iv~~saDl~~s~~~~~-------------~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~ 479 (719)
|++.| ..|+-+.-.|-..+.|...++++-- .-+..+..+.-+=-++|..++|-+++|+=-|.+..
T Consensus 891 ~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~ 970 (1228)
T PRK12270 891 FGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVE 970 (1228)
T ss_pred HHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecC
Confidence 55544 3566666678888899866655320 00111111111124579999999999999999988
Q ss_pred CCCCccEE-EehhhhH---HhHHHHHHHHhh----hcCCEEEEEecCCCccCCCCCCCCC--hhhhhHHcCCCCeEEEee
Q 005021 480 SPGLIPYC-ATFFVFT---DYMRAAIRISAL----CEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRP 549 (719)
Q Consensus 480 G~~~~Pv~-~~y~~F~---~ra~dqir~~a~----~~~pV~~v~~~~g~g~g~dG~THq~--~edia~lr~iPnl~V~~P 549 (719)
..--..++ ..|.+|. |-..|+...++. |...|++...| |+-..||-|.+ +|-.--|++=.||+|..|
T Consensus 971 ~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPH---GyEGQGPdHSSaRiERfLqlcAe~nm~Va~p 1047 (1228)
T PRK12270 971 RPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPH---GYEGQGPDHSSARIERFLQLCAEGNMTVAQP 1047 (1228)
T ss_pred CCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccC---CcCCCCCCcchHHHHHHHHhhccCCeEEEcc
Confidence 74122333 4677776 355666444432 56778888855 34457899976 454445778899999999
Q ss_pred CCHHHHHHHHH-HHHHcCCCcEEEEEcCCCCCCCC-CCCccccccccEE-Eec-CCCCCC--CCEEEEEeCHhHHHHHHH
Q 005021 550 ADGNETAGAYK-VAVANRKRPSILALSRQKLPHLA-GTSIDGVEKGAYI-ISD-NSSGNK--PDVILIGTGSELEIAAKA 623 (719)
Q Consensus 550 ~d~~e~~~~l~-~a~~~~~~P~~irl~r~~~~~~~-~~~~~~~~~G~~~-i~~-~~~~~g--~dvtIva~G~~v~~al~A 623 (719)
+++.....+|+ .|+....+|.++..||+.+..-. ..+.+.|.-|+++ |+. .....+ -+=+|+++|-.....++.
T Consensus 1048 sTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~ 1127 (1228)
T PRK12270 1048 STPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAAR 1127 (1228)
T ss_pred CChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHHhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHH
Confidence 99999999998 55655678999999987653211 1123345556654 222 111111 234688889988766654
Q ss_pred HHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhc--cCCCceEEEEccccccC-c
Q 005021 624 AEELRKGGKAVRVVSFVSWELFDEQSDAYKESVL--PAAVSARVSIEAGSTFG-W 675 (719)
Q Consensus 624 a~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~--~~~~~~vvvvE~~~~~G-~ 675 (719)
.+. ...-++.||-+-.+.||..+.+. +.+. +....++.+-||....| |
T Consensus 1128 R~k--~~~~d~AIvRvEQLyP~p~~~l~--~~l~~ypna~e~~wvQeEP~NqGaw 1178 (1228)
T PRK12270 1128 REK--DGRDDTAIVRVEQLYPLPRAELR--EALARYPNATEVVWVQEEPANQGAW 1178 (1228)
T ss_pred HHh--cCCCceEEEEhhhhCCCCHHHHH--HHHHhCCCcceeEEeccCcccCCCc
Confidence 332 23456999999999999876543 2221 22224456667766556 5
No 67
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=98.83 E-value=7.6e-09 Score=101.85 Aligned_cols=88 Identities=23% Similarity=0.169 Sum_probs=70.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.+++.|+|.++|.+ +++|||++|||+++. ..+.+..|.+++|+.+++|+|||++++..
T Consensus 46 ~~g~mG~~lp~AiGa~la~~--------------~~~vv~i~GDG~f~~--~~~el~ta~~~~lpv~ivv~NN~~~~~~~ 109 (172)
T cd02004 46 TFGTLGVGLGYAIAAALARP--------------DKRVVLVEGDGAFGF--SGMELETAVRYNLPIVVVVGNNGGWYQGL 109 (172)
T ss_pred CCCcccchHHHHHHHHHhCC--------------CCeEEEEEcchhhcC--CHHHHHHHHHcCCCEEEEEEECcccccch
Confidence 34779999999999998742 578999999999995 35778899999998888888999998865
Q ss_pred chhh------------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI------------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~------------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....+..+..++||++..+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 145 (172)
T cd02004 110 DGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELV 145 (172)
T ss_pred hhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEE
Confidence 4321 12457889999999988776
No 68
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.73 E-value=3.9e-07 Score=100.79 Aligned_cols=202 Identities=15% Similarity=0.162 Sum_probs=146.6
Q ss_pred cccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCC
Q 005021 464 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 543 (719)
Q Consensus 464 IaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPn 543 (719)
=.|..++++|.|.|..| .|.++.|=+.=+.+|.|+|...+...+|++++.. .|.+.+ .++||....|+.+.+. -+
T Consensus 56 E~E~aA~~~aiGAs~aG--aRa~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~-~R~~p~-~~~~~~~q~D~~~~~d-~g 130 (390)
T PRK08366 56 ESEHSAMAACIGASAAG--ARAFTATSAQGLALMHEMLHWAAGARLPIVMVDV-NRAMAP-PWSVWDDQTDSLAQRD-TG 130 (390)
T ss_pred CCHHHHHHHHHHHHhhC--CCeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEe-ccCCCC-CCCCcchhhHHHHHhh-cC
Confidence 37999999999999999 5999999888888999999999999999887762 555543 5789888889776665 47
Q ss_pred eEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC-------CCC--CC-------CC---C-----CCccccc-----
Q 005021 544 ILMLRPADGNETAGAYKVAVA---NRKRPSILALSR-------QKL--PH-------LA---G-----TSIDGVE----- 591 (719)
Q Consensus 544 l~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r-------~~~--~~-------~~---~-----~~~~~~~----- 591 (719)
..++.|+|.+|+..+...|.+ +..-|+++++.. ..+ +. ++ . ....++.
T Consensus 131 ~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~ 210 (390)
T PRK08366 131 WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALA 210 (390)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCC
Confidence 899999999999998877763 246899998632 110 00 00 0 0000100
Q ss_pred ---------------------------------cc-cEE-EecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEE
Q 005021 592 ---------------------------------KG-AYI-ISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 636 (719)
Q Consensus 592 ---------------------------------~G-~~~-i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~V 636 (719)
.| .|. ..+.-..+..|++||++|+....+.+|.+.|+++|+++.+
T Consensus 211 ~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~ 290 (390)
T PRK08366 211 TPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGY 290 (390)
T ss_pred CCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceee
Confidence 00 000 0010000146899999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC
Q 005021 637 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 674 (719)
Q Consensus 637 Id~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G 674 (719)
+.++++.||..+.+. .+++.. +.|+++|.....|
T Consensus 291 l~i~~~~PfP~~~i~---~~l~~~-k~ViVvE~n~~~G 324 (390)
T PRK08366 291 AKVRWFRPFPKEELY---EIAESV-KGIAVLDRNFSFG 324 (390)
T ss_pred EEEeeecCCCHHHHH---HHHhcC-CEEEEEeCCCCCC
Confidence 999999999997653 344443 4469999987644
No 69
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.72 E-value=4e-07 Score=105.69 Aligned_cols=212 Identities=20% Similarity=0.148 Sum_probs=150.0
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
+-.+-..=.|..++++|.|.|..| .|.++.|=..=+.+|.|.|...+...+|++++. .++.|.+..-+|+....|+-
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG--~Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~-~~R~gpstg~~t~~eq~D~~ 313 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAG--ARAMTATSGPGFALMTEALGLAGMTETPLVIVD-VQRGGPSTGLPTKTEQSDLL 313 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcC--CceeecCCCCChhHhHHHHhHHHhccCCEEEEE-cccCCCCCCCCCCccHHHHH
Confidence 344445579999999999999999 599998877778899999987888999988876 46665544457898888987
Q ss_pred HHcCCC----CeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC--CC---CC---------------
Q 005021 537 SFRAMP----NILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL--PH---LA--------------- 583 (719)
Q Consensus 537 ~lr~iP----nl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r------~~~--~~---~~--------------- 583 (719)
+.+.-- ++.|++|+|.+|+..+...|.+ +..-|++++... ..+ +. +.
T Consensus 314 ~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 393 (562)
T TIGR03710 314 FALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYK 393 (562)
T ss_pred HHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCC
Confidence 766432 3789999999999998877763 256799998631 111 00 00
Q ss_pred ----CC-Ccccc-cccc---------------------------------------------EEEecCCCCCCCCEEEEE
Q 005021 584 ----GT-SIDGV-EKGA---------------------------------------------YIISDNSSGNKPDVILIG 612 (719)
Q Consensus 584 ----~~-~~~~~-~~G~---------------------------------------------~~i~~~~~~~g~dvtIva 612 (719)
++ ...+. ..|. ++... ..+.|+.||+
T Consensus 394 ~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~---~~da~~~iv~ 470 (562)
T TIGR03710 394 RYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYG---DEDADVLVIG 470 (562)
T ss_pred CCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeec---CCCCCEEEEE
Confidence 00 00000 0110 00000 1146799999
Q ss_pred eCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhh
Q 005021 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKI 678 (719)
Q Consensus 613 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~ 678 (719)
+|++...+.+|.+.|+++|+++.++.++++.||..+.+. ..++.. +.|+|+|.....-+...
T Consensus 471 ~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~---~~l~~~-k~v~VvE~n~~Gql~~~ 532 (562)
T TIGR03710 471 WGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELA---ELLEGA-KKVIVVEQNATGQLAKL 532 (562)
T ss_pred eCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHH---HHHhcC-CEEEEEccChhhhHHHH
Confidence 999999999999999999999999999999999987553 344433 34699999855334443
No 70
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.66 E-value=8e-07 Score=98.52 Aligned_cols=203 Identities=15% Similarity=0.197 Sum_probs=144.2
Q ss_pred cccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCC
Q 005021 464 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 543 (719)
Q Consensus 464 IaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPn 543 (719)
=+|..++++|.|.|..| .|.+++|=+.=+.+|.|+|...+...+|++++.. .+ +++.-..+|....|+...|..+
T Consensus 57 EsE~aA~~~~~GAs~aG--aRa~TaTS~~Gl~lm~E~l~~aag~~lP~V~vv~-~R-~~~~p~~i~~d~~D~~~~rd~g- 131 (394)
T PRK08367 57 ESEHSAISACVGASAAG--VRTFTATASQGLALMHEVLFIAAGMRLPIVMAIG-NR-ALSAPINIWNDWQDTISQRDTG- 131 (394)
T ss_pred CCHHHHHHHHHHHHhhC--CCeEeeeccchHHHHhhHHHHHHHccCCEEEEEC-CC-CCCCCCCcCcchHHHHhccccC-
Confidence 47999999999999999 5999999888888999999999999999988872 33 3343336677777866666544
Q ss_pred eEEEeeCCHHHHHHHHHHHHHcC---C--CcEEEEEcCC-------C--CCC---C----CC--------CCccccc---
Q 005021 544 ILMLRPADGNETAGAYKVAVANR---K--RPSILALSRQ-------K--LPH---L----AG--------TSIDGVE--- 591 (719)
Q Consensus 544 l~V~~P~d~~e~~~~l~~a~~~~---~--~P~~irl~r~-------~--~~~---~----~~--------~~~~~~~--- 591 (719)
..++.|+|.+|+..+...|.+-. + -|+++++..- . ++. + +. .+..+..
T Consensus 132 ~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~ 211 (394)
T PRK08367 132 WMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGA 211 (394)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCC
Confidence 67788999999999888776322 2 5999886321 0 000 0 00 0000000
Q ss_pred -----------------------------------cc-cEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEE
Q 005021 592 -----------------------------------KG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVR 635 (719)
Q Consensus 592 -----------------------------------~G-~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~ 635 (719)
.| +|...+.-+....|++||++|+....+.+|.+.|+++|++|.
T Consensus 212 ~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVG 291 (394)
T PRK08367 212 LAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVG 291 (394)
T ss_pred CCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcce
Confidence 11 122222100124799999999999999999999999999999
Q ss_pred EEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCc
Q 005021 636 VVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 675 (719)
Q Consensus 636 VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~ 675 (719)
++-++.+.||..+.+. .+++.. +.|+|+|-....|.
T Consensus 292 llri~~~rPFP~~~i~---~~l~~~-k~ViVvE~n~s~g~ 327 (394)
T PRK08367 292 AAKLTVYRPFPVEEIR---ALAKKA-KVLAFLEKNISFGL 327 (394)
T ss_pred eEEEeEecCCCHHHHH---HHHccC-CEEEEEeCCCCCCC
Confidence 9999999999998653 344443 44699999876553
No 71
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=98.65 E-value=4.4e-08 Score=97.06 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=70.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh-hHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME-GIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e-G~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
..|.+|.|++.|+|+++|.. +++|||++|||+++. | ++.+..|..++++.+++|+|||.+++.
T Consensus 49 ~~g~mG~gl~~AiGa~la~p--------------~~~Vv~i~GDG~f~~~g--~~eL~ta~~~~l~i~vvV~nN~~~g~~ 112 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE--------------DKKVVAVIGDSTFFHSG--ILGLINAVYNKANITVVILDNRTTAMT 112 (178)
T ss_pred ccccCccHHHHHhhHHhhCC--------------CCCEEEEecChHHhhcc--HHHHHHHHHcCCCEEEEEECCcceecc
Confidence 47899999999999999853 567999999999953 3 688888999999888888999988754
Q ss_pred cchhh----------hcchhHHHHHhccCceEEEE
Q 005021 276 GDTEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ~~~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
+.... ....++.+.+++|||+...|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 147 (178)
T cd02008 113 GGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVV 147 (178)
T ss_pred CCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEe
Confidence 32211 01357899999999998876
No 72
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=98.58 E-value=7.1e-08 Score=95.37 Aligned_cols=86 Identities=27% Similarity=0.271 Sum_probs=66.2
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|.+|.+++.|+|.++|.+ +.+|||++|||+++.+. ..+..|..++++-+++|+|||+|++....
T Consensus 49 g~mG~~lp~aiGaala~~--------------~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~ 112 (178)
T cd02002 49 GGLGWGLPAAVGAALANP--------------DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSF 112 (178)
T ss_pred ccccchHHHHHHHHhcCC--------------CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHH
Confidence 899999999999999742 56899999999998775 68889999998755566666668875421
Q ss_pred hh------------------hcchhHHHHHhccCceEEEE
Q 005021 279 EI------------------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ~~------------------~~~~~~~~~~~a~G~~~~~v 300 (719)
.. ....++.+.+++||++..+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 152 (178)
T cd02002 113 LKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERV 152 (178)
T ss_pred HHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEe
Confidence 10 01246888999999987765
No 73
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=98.48 E-value=2.6e-07 Score=92.44 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=62.6
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcE-EEEEeCCCCCc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL-IAFYDDNHISI 274 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nl-i~ivddN~~si 274 (719)
+++|++|.+++.|+|+++|.. +..|+|++|||+++- ..+.|..+.+++++|+ ++|+||+++.+
T Consensus 45 ~~~g~mG~~lpaAiGaala~p--------------~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~ 108 (188)
T cd03371 45 LTVGSMGHASQIALGIALARP--------------DRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDS 108 (188)
T ss_pred eecCccccHHHHHHHHHHhCC--------------CCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhc
Confidence 345999999999999998842 567999999999973 4567888889987665 55555555655
Q ss_pred ccchhh-hcchhHHHHHhccCceE
Q 005021 275 DGDTEI-AFTENVDKRFEGLGWHV 297 (719)
Q Consensus 275 s~~~~~-~~~~~~~~~~~a~G~~~ 297 (719)
...... ....+..+..++||+..
T Consensus 109 ~~~~~~~~~~~d~~~~A~a~G~~~ 132 (188)
T cd03371 109 VGGQPTVSFDVSLPAIAKACGYRA 132 (188)
T ss_pred cCCcCCCCCCCCHHHHHHHcCCce
Confidence 332111 12357888999999875
No 74
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.44 E-value=4.9e-06 Score=80.45 Aligned_cols=150 Identities=16% Similarity=0.163 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhCC-ceEEEecCCCCCcccc--ccccc-cCccc---------CCCCCccccccccchHHHHHHHHHhc
Q 005021 413 NLSQTCLNALAKTLP-GLLGGSADLASSNMTL--LKMFG-DFQKD---------TPEERNVRFGVREHGMGAICNGIALH 479 (719)
Q Consensus 413 ~a~~~~L~~l~~~dp-~iv~~saDl~~s~~~~--~~g~~-~f~~~---------~~p~R~~d~GIaE~~~vg~AaGlA~~ 479 (719)
.++++.|.++++.|| ++-++++|...|+... +..+. .|..+ .-+++-+..-++|+.+.|+..|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 457889999999988 5999999988776542 11111 11100 11345555669999999999999999
Q ss_pred CCCCccEEEehhhhHH---hHHHH-H---HHHh---h-hcCC-EEEEEecCCCccCCCCCCCCChhhhh-HHcCCCC-eE
Q 005021 480 SPGLIPYCATFFVFTD---YMRAA-I---RISA---L-CEAG-VIYVMTHDSIGLGEDGPTHQPIEHLA-SFRAMPN-IL 545 (719)
Q Consensus 480 G~~~~Pv~~~y~~F~~---ra~dq-i---r~~a---~-~~~p-V~~v~~~~g~g~g~dG~THq~~edia-~lr~iPn-l~ 545 (719)
|+ .-++.+|..|+. -|+.| + +... . .+.| +.++.|....--+.+|.|||...-+. ++.-.|+ ++
T Consensus 82 Gr--hglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~R 159 (179)
T PF03894_consen 82 GR--HGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVR 159 (179)
T ss_dssp T---EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EE
T ss_pred CC--cccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccce
Confidence 97 899999999985 56666 2 2221 1 2233 44454434444588999999554333 4444555 69
Q ss_pred EEeeCCHHHHHHHHHHHHH
Q 005021 546 MLRPADGNETAGAYKVAVA 564 (719)
Q Consensus 546 V~~P~d~~e~~~~l~~a~~ 564 (719)
||.|.|++.+-.++..|++
T Consensus 160 vylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 160 VYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEE-SSHHHHHHHHHHHHH
T ss_pred eecCCcHhHHHHHHHHHhc
Confidence 9999999999999999985
No 75
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=98.38 E-value=4.8e-07 Score=90.28 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=65.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.+++.|+|.++|.. +++|+|++|||+++ +....|..|..++|+-+++|+||++|.+...
T Consensus 49 ~g~mG~~lp~aiGa~la~~--------------~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~ 112 (186)
T cd02015 49 LGTMGFGLPAAIGAKVARP--------------DKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLGMVRQ 112 (186)
T ss_pred ccchhchHHHHHHHHHhCC--------------CCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence 4789999999999998742 56899999999998 4556699999999986777788887765321
Q ss_pred hh----------h--hcchhHHHHHhccCceEEEE
Q 005021 278 TE----------I--AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~--~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....+..+..++||++..+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 147 (186)
T cd02015 113 WQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRV 147 (186)
T ss_pred HHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEe
Confidence 10 0 11346788889999887765
No 76
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=98.36 E-value=7.1e-07 Score=90.50 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=66.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|++|.|++.|+|.++|.. +.+|||++|||+++-+. ..|..|.+++|+-+++|+|||+|.+-.
T Consensus 46 ~~gsmG~~lpaAiGa~la~p--------------~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 109 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAKP--------------DREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCIN 109 (205)
T ss_pred CcchhhhHHHHHHHHHHhCC--------------CCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHH
Confidence 45789999999999998742 57899999999999754 356678999999889999999997633
Q ss_pred chhh------------------------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI------------------------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~------------------------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....+..+..++||++..+|
T Consensus 110 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 157 (205)
T cd02003 110 NLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKV 157 (205)
T ss_pred HHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEE
Confidence 1100 01246788888899887765
No 77
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.34 E-value=1.1e-06 Score=87.17 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=62.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcE-EEEEeCCCCCccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL-IAFYDDNHISIDG 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nl-i~ivddN~~sis~ 276 (719)
.|++|.+++.|+|+|+|.+ .+|+|++|||+++-. ...+..+..+++.|+ ++|+|||+|++.+
T Consensus 41 ~g~mG~~lp~AiGaala~~---------------~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~ 103 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP---------------RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTG 103 (179)
T ss_pred ccchhhHHHHHHHHHhcCC---------------CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccC
Confidence 6899999999999999842 469999999999532 234445566665444 5557999998765
Q ss_pred chhh-h-cchhHHHHHhccCceEEEE
Q 005021 277 DTEI-A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~-~-~~~~~~~~~~a~G~~~~~v 300 (719)
.... . ...+..+..++||++...|
T Consensus 104 ~~~~~~~~~~d~~~lA~a~G~~~~~v 129 (179)
T cd03372 104 NQPTHAGKKTDLEAVAKACGLDNVAT 129 (179)
T ss_pred CCCCCCCCCCCHHHHHHHcCCCeEEe
Confidence 3321 1 1347888999999988765
No 78
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=98.31 E-value=1.2e-06 Score=86.70 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=64.7
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|.+|.+++.|+|.++|.. +.+|+|++|||+++-+ ..| +..+..++++-+++|+||++|.+..
T Consensus 49 ~~g~mG~~~~~aiGa~~a~~--------------~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~ 112 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAYP--------------DRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIK 112 (178)
T ss_pred CCchhhhHHHHHHHHHHhCC--------------CCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHH
Confidence 34789999999999988742 5689999999999988 666 5668889997566666666787632
Q ss_pred ch---------hh-hcchhHHHHHhccCceEEEE
Q 005021 277 DT---------EI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~---------~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. .. ....++.+..++||++...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 146 (178)
T cd02014 113 WEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRV 146 (178)
T ss_pred HHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEe
Confidence 11 10 11347888999999987654
No 79
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.28 E-value=1.5e-06 Score=86.53 Aligned_cols=88 Identities=25% Similarity=0.269 Sum_probs=66.3
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.+++.|+|.++|.. +..|+|++|||+++- ..+| +..|.+++++.+++|+|||+|.+..
T Consensus 48 ~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~ 111 (183)
T cd02005 48 LWGSIGYSVPAALGAALAAP--------------DRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIER 111 (183)
T ss_pred chhhHhhhHHHHHHHHHhCC--------------CCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEE
Confidence 45889999999999998742 568999999999955 5677 4468888899999999999998743
Q ss_pred chh-------hhcchhHHHHHhccC----ceEEEE
Q 005021 277 DTE-------IAFTENVDKRFEGLG----WHVIWV 300 (719)
Q Consensus 277 ~~~-------~~~~~~~~~~~~a~G----~~~~~v 300 (719)
... .....+..+..++|| +...+|
T Consensus 112 ~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v 146 (183)
T cd02005 112 AIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRV 146 (183)
T ss_pred EeccCCcCcccCCCCCHHHHHHHhCCCccccEEEe
Confidence 211 011346788888888 455554
No 80
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=98.26 E-value=5.4e-06 Score=90.97 Aligned_cols=97 Identities=25% Similarity=0.323 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCC
Q 005021 182 TPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 261 (719)
Q Consensus 182 ~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~ 261 (719)
.+|||.. .++.|++|.+++.|+|+|+|.. +++|||+.|||++.-- ...|..++.+++.
T Consensus 210 ~~~~~~~------f~~~GsMG~a~p~AlG~ala~p--------------~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~ 267 (361)
T TIGR03297 210 GQGHARD------FLTVGSMGHASQIALGLALARP--------------DQRVVCLDGDGAALMH--MGGLATIGTQGPA 267 (361)
T ss_pred ccCCCCc------eEeechhhhHHHHHHHHHHHCC--------------CCCEEEEEChHHHHHH--HHHHHHHHHhCCC
Confidence 4467643 2346999999999999999842 5789999999998422 2457778888876
Q ss_pred cEEEEEeCCCC-Ccccchh-hhcchhHHHHHhccCce-EEEE
Q 005021 262 KLIAFYDDNHI-SIDGDTE-IAFTENVDKRFEGLGWH-VIWV 300 (719)
Q Consensus 262 nli~ivddN~~-sis~~~~-~~~~~~~~~~~~a~G~~-~~~v 300 (719)
|+++||-||+. +..+... .....++.+..++|||. .+.|
T Consensus 268 nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v 309 (361)
T TIGR03297 268 NLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAKVYEV 309 (361)
T ss_pred CeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCceEEEe
Confidence 78877766664 3322111 11245788889999973 4443
No 81
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=98.24 E-value=2.3e-06 Score=85.07 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=62.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEE-eCCCCCccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY-DDNHISIDG 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~iv-ddN~~sis~ 276 (719)
.|++|.|++.|+|+++|. +.+|||++|||+++-+. ..+..|..+++.|+++|| ||++|++-+
T Consensus 41 ~gsmG~~lpaAiGa~la~---------------~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~ 103 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT---------------DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTG 103 (181)
T ss_pred ccccccHHHHHHHHHHcC---------------CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCcccccc
Confidence 689999999999999985 24699999999998554 667778888853465555 666677644
Q ss_pred chhh-h-cchhHHHHHhccCceEEE
Q 005021 277 DTEI-A-FTENVDKRFEGLGWHVIW 299 (719)
Q Consensus 277 ~~~~-~-~~~~~~~~~~a~G~~~~~ 299 (719)
.... . ...+..+..++|||+...
T Consensus 104 ~q~~~~~~~~d~~~lA~a~G~~~~~ 128 (181)
T TIGR03846 104 NQPTPASRRTDLELVAKAAGIRNVE 128 (181)
T ss_pred CcCCCCCCCCCHHHHHHHCCCCeEE
Confidence 2111 1 134688899999998765
No 82
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.17 E-value=4.5e-05 Score=95.16 Aligned_cols=204 Identities=15% Similarity=0.119 Sum_probs=137.1
Q ss_pred cccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCC
Q 005021 464 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 543 (719)
Q Consensus 464 IaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPn 543 (719)
=.|..+++++.|-+..| .+..+.|=+.=+.+|.+.|...+-..+|+++... .+.+.+..+..|....|+...|.. |
T Consensus 58 EsE~~A~~av~GA~~aG--ara~T~TSs~GL~LM~e~l~~~ag~~~P~Vi~va-~R~~~~~~~~i~~dh~Dv~~~R~~-G 133 (1165)
T TIGR02176 58 QSEAGAAGAVHGALQTG--ALTTTFTASQGLLLMIPNMYKIAGELLPCVFHVS-ARAIAAHALSIFGDHQDVMAARQT-G 133 (1165)
T ss_pred cchHHHHHHHHhHhhcC--CCEEEecChhHHHHHHHHHHHHHhccCCEEEEEe-cCCCCCCCCccCCCchHHHHhhcC-C
Confidence 37999999999999999 4777777666677888888666656899888762 444333234456566677666664 6
Q ss_pred eEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC-------CCCCC---------CCCCCc-----------cccc--
Q 005021 544 ILMLRPADGNETAGAYKVAVA---NRKRPSILALSR-------QKLPH---------LAGTSI-----------DGVE-- 591 (719)
Q Consensus 544 l~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r-------~~~~~---------~~~~~~-----------~~~~-- 591 (719)
..|++|++.+|+..+-..|.+ +...|+++.+.- ..+.. ++.... .+..
T Consensus 134 ~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p~~~G 213 (1165)
T TIGR02176 134 FAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHPHVRG 213 (1165)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCCceeC
Confidence 799999999999887665542 246798887531 01100 000000 0000
Q ss_pred ------------------------------------cc-cEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcE
Q 005021 592 ------------------------------------KG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAV 634 (719)
Q Consensus 592 ------------------------------------~G-~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v 634 (719)
.| .|...+..+....+.+||++|+....+.+|.+.|+++|++|
T Consensus 214 ~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~G~kV 293 (1165)
T TIGR02176 214 TAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAKGEKV 293 (1165)
T ss_pred CCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCce
Confidence 11 11111111112478999999999999999999999999999
Q ss_pred EEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC
Q 005021 635 RVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 674 (719)
Q Consensus 635 ~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G 674 (719)
.+|.++.+.||+.+.+. .+++.+.+.|+|+|-....|
T Consensus 294 Gli~vr~~rPFp~e~l~---~aLp~svK~I~Vler~~~~g 330 (1165)
T TIGR02176 294 GLLKVRLYRPFSAETFF---AALPKSVKRIAVLDRTKEPG 330 (1165)
T ss_pred eEEEEeEeCCCCHHHHH---HHHHhcCCEEEEEECCCCCC
Confidence 99999999999987653 34544445578999885444
No 83
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=98.17 E-value=3.1e-06 Score=85.25 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=65.3
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|.++|.. +++|+|++|||+++-. . ..|..|.+++|+-+++|+||++|.+..
T Consensus 51 ~~g~mG~~lpaaiGa~la~p--------------~r~vv~i~GDG~f~m~-~-~eL~Ta~~~~lpvi~vV~NN~~yg~~~ 114 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAAP--------------DRPVVAIAGDGAWGMS-M-MEIMTAVRHKLPVTAVVFRNRQWGAEK 114 (196)
T ss_pred CCcccccHHHHHHHHHHhCC--------------CCcEEEEEcchHHhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHH
Confidence 34789999999999998742 5689999999999874 3 445668899997666677999998643
Q ss_pred chhh-----------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI-----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~-----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....++.+..++||++..+|
T Consensus 115 ~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 149 (196)
T cd02013 115 KNQVDFYNNRFVGTELESESFAKIAEACGAKGITV 149 (196)
T ss_pred HHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEE
Confidence 2110 11346788889999887765
No 84
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=98.16 E-value=3.6e-06 Score=97.51 Aligned_cols=87 Identities=25% Similarity=0.292 Sum_probs=68.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.+++.|+|.++|.. +.+|+|++|||+++.+. +.+..|.+++|+-+++|+|||+|.+...
T Consensus 406 ~g~mG~~lp~aiGa~la~p--------------~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~~~~~~~ 469 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQP--------------GRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGRYGALRW 469 (530)
T ss_pred CCcccchHHHHHHHHHhCC--------------CCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChHHHHHHH
Confidence 5899999999999999742 56899999999999874 8899999999986777777777876321
Q ss_pred h----------hh-hcchhHHHHHhccCceEEEE
Q 005021 278 T----------EI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~----------~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
. +. ....++.+..++||++...|
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v 503 (530)
T PRK07092 470 FAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRV 503 (530)
T ss_pred HHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEe
Confidence 1 11 12356888999999987766
No 85
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.12 E-value=0.0004 Score=77.00 Aligned_cols=249 Identities=15% Similarity=0.181 Sum_probs=143.0
Q ss_pred HHHHHHHHhhCCceEEEecCCCCCccccc------ccccc-Cc------cc-CCCCCccccccccchHHHHHHHHHhcCC
Q 005021 416 QTCLNALAKTLPGLLGGSADLASSNMTLL------KMFGD-FQ------KD-TPEERNVRFGVREHGMGAICNGIALHSP 481 (719)
Q Consensus 416 ~~~L~~l~~~dp~iv~~saDl~~s~~~~~------~g~~~-f~------~~-~~p~R~~d~GIaE~~~vg~AaGlA~~G~ 481 (719)
.-++..++-+.-++-+-+.|++.+++.-. ..+++ |. .+ +--=-+-|..++|.+..|+--||+....
T Consensus 571 AlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP 650 (913)
T KOG0451|consen 571 ALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENP 650 (913)
T ss_pred HHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcccccCCc
Confidence 44566777788899999999987664321 00110 00 00 0001345678999999999999999875
Q ss_pred CCccEEE-ehhhhHHhH---HHHHHHHh----hhcCCEEEEEecCCCccCCCCCCCCChhhhhHHc-----------CCC
Q 005021 482 GLIPYCA-TFFVFTDYM---RAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR-----------AMP 542 (719)
Q Consensus 482 ~~~Pv~~-~y~~F~~ra---~dqir~~a----~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr-----------~iP 542 (719)
...|++. .|.+|..-+ +|-....+ +....+++...| |+ -.-||-|.+--..-+|. .--
T Consensus 651 ~~L~iWEAQFGDFfNGAQIIiDTFi~sgE~KWl~ssglvmLLPH-Gy--DGAgpeHSSCRiERFLQlCDS~E~~vDGd~V 727 (913)
T KOG0451|consen 651 NNLIIWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPH-GY--DGAGPEHSSCRIERFLQLCDSKETSVDGDSV 727 (913)
T ss_pred ccceeehhhhcccccCceEEEeeeecccchhhhhhCCeEEEccC-Cc--CCCCCccchhhHHHHHHHhccccccCCCcce
Confidence 4567764 677776432 22111111 223445555433 33 23467787655545553 224
Q ss_pred CeEEEeeCCHHHHHHHHHH-HHHcCCCcEEEEEcCCCC--CCCCCCCcccccccc-E--E----EecCCCCCCCCEEEEE
Q 005021 543 NILMLRPADGNETAGAYKV-AVANRKRPSILALSRQKL--PHLAGTSIDGVEKGA-Y--I----ISDNSSGNKPDVILIG 612 (719)
Q Consensus 543 nl~V~~P~d~~e~~~~l~~-a~~~~~~P~~irl~r~~~--~~~~~~~~~~~~~G~-~--~----i~~~~~~~g~dvtIva 612 (719)
||.|+-|.++.+...+|+. .+++...|.++.-||--+ |.... ..+.+..|. + . +.+. ..-+-+|+.
T Consensus 728 Nm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~S-T~~ef~PGTtf~nVigd~~~~p---~kvkkvifc 803 (913)
T KOG0451|consen 728 NMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATS-THEEFQPGTTFHNVIGDTIAKP---EKVKKVIFC 803 (913)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhh-hHhhcCCCccccccccccccCh---hHheEEEEe
Confidence 7999999999999999984 456678898887666322 11100 112233331 1 1 1121 123456777
Q ss_pred eCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhcc--CCCceEEEEccccccC
Q 005021 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP--AAVSARVSIEAGSTFG 674 (719)
Q Consensus 613 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~--~~~~~vvvvE~~~~~G 674 (719)
.|--.....+..+.+..+. .+.+|-+-++-||..+.+.. .+.+ .-...|..-|+....|
T Consensus 804 SGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa--~l~kY~~vqdfvWSQEEprNmG 864 (913)
T KOG0451|consen 804 SGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQA--QLAKYGNVQDFVWSQEEPRNMG 864 (913)
T ss_pred cCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHH--HHHhcCChhhhcccccccccCC
Confidence 7887776666666654333 37888887777776654431 1111 1122356778887766
No 86
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=98.11 E-value=6.3e-06 Score=80.06 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=61.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhc-CCCcEEEEEeCCCCCccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL-GLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~-~L~nli~ivddN~~sis~ 276 (719)
-|++|.|++.|+|+++|. +.+|||++|||+++-.. ..+..+..+ +++=+++|+||++|.+.+
T Consensus 41 ~gsmG~~lp~AiGa~~a~---------------~~~Vv~i~GDG~f~m~~--~el~t~~~~~~~~i~~vV~nN~~~g~~~ 103 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL---------------SRKVIVVDGDGSLLMNP--GVLLTAGEFTPLNLILVVLDNRAYGSTG 103 (157)
T ss_pred ecchhhHHHHHHHHHhcC---------------CCcEEEEECchHHHhcc--cHHHHHHHhcCCCEEEEEEeCccccccC
Confidence 788999999999999874 24699999999994221 224556666 475445666888888654
Q ss_pred chhh-hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....++.+..++||++..+|
T Consensus 104 ~~~~~~~~~d~~~lA~a~G~~~~~v 128 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSA 128 (157)
T ss_pred CcCCCCCCCCHHHHHHHCCCceEEc
Confidence 2221 12457899999999987765
No 87
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.10 E-value=6.9e-06 Score=87.32 Aligned_cols=73 Identities=19% Similarity=0.082 Sum_probs=61.4
Q ss_pred CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 193 gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
.+.......|.+++.|.|+++|.+.++. .+..|++++|||.+.++-+ |+|++|..+++ |+++||.||++
T Consensus 63 ~~~~i~~~~G~~~~~A~G~a~A~~~~~~---------~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~-~v~~vv~dN~~ 131 (300)
T PRK11864 63 TVPVLHTAFAATAAVASGIEEALKARGE---------KGVIVVGWAGDGGTADIGF-QALSGAAERNH-DILYIMYDNEA 131 (300)
T ss_pred cccceeehhhChHHHHHHHHHHHHhhCC---------CCcEEEEEEccCccccccH-HHHHHHHHhCc-CEEEEEECCee
Confidence 4556678899999999999999988652 1345777999999988885 99999999997 59999999998
Q ss_pred Cccc
Q 005021 273 SIDG 276 (719)
Q Consensus 273 sis~ 276 (719)
.+.+
T Consensus 132 ~~~T 135 (300)
T PRK11864 132 YMNT 135 (300)
T ss_pred eecC
Confidence 8754
No 88
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=98.06 E-value=7.9e-06 Score=80.93 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=64.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|.++|.. +.+|||++|||+++ +....|..|.+++++-+++|+||++|.+-.
T Consensus 46 ~~g~mG~~lp~aiGa~la~~--------------~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~ 109 (177)
T cd02010 46 GLATMGVALPGAIGAKLVYP--------------DRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYGLIK 109 (177)
T ss_pred CChhhhhHHHHHHHHHHhCC--------------CCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcchHHH
Confidence 45789999999999999842 57899999999996 555667778999998777778999888642
Q ss_pred chh---------h-hcchhHHHHHhccCceEEEE
Q 005021 277 DTE---------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~---------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
... . ....+..+..++||.+..+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 143 (177)
T cd02010 110 WKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRI 143 (177)
T ss_pred HHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEE
Confidence 111 0 01236677777888776654
No 89
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=98.02 E-value=6.3e-06 Score=79.47 Aligned_cols=89 Identities=22% Similarity=0.276 Sum_probs=68.2
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
...|.+|.+++.|+|+++|. .+.+|||++|||++.-. .-.+..|.+++++-++||+||+.|.+.
T Consensus 25 ~~~g~mG~~~~~aiGa~~a~--------------p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~ 88 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALAR--------------PDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMT 88 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHHS--------------TTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHH
T ss_pred CCccccCCHHHhhhHHHhhc--------------CcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEe
Confidence 46789999999999999972 26789999999999776 556778888889877788888888764
Q ss_pred cchhh--------------hcchhHHHHHhccCceEEEE
Q 005021 276 GDTEI--------------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ~~~~~--------------~~~~~~~~~~~a~G~~~~~v 300 (719)
..... ....++.+..+++|.+..+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 127 (153)
T PF02775_consen 89 GGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARV 127 (153)
T ss_dssp HHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEE
T ss_pred ccccccCcCcccccccccccccCCHHHHHHHcCCcEEEE
Confidence 43310 11347888999999987765
No 90
>PRK06163 hypothetical protein; Provisional
Probab=98.01 E-value=1.3e-05 Score=80.97 Aligned_cols=87 Identities=24% Similarity=0.307 Sum_probs=60.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhc-CCCcEEEEEeCCCCCccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL-GLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~-~L~nli~ivddN~~sis~ 276 (719)
.|.+|.|++.|+|+++|.. +++|||++|||+++=. ...|..|..+ +++-++||+||++|.+..
T Consensus 56 ~GsMG~glpaAiGaalA~p--------------~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~ 119 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQP--------------KRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITG 119 (202)
T ss_pred ecccccHHHHHHHHHHhCC--------------CCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcC
Confidence 6889999999999999842 5789999999997533 2345555555 566566777777888643
Q ss_pred chhh--hcchhHHHHHhccCce-EEEE
Q 005021 277 DTEI--AFTENVDKRFEGLGWH-VIWV 300 (719)
Q Consensus 277 ~~~~--~~~~~~~~~~~a~G~~-~~~v 300 (719)
.... ....++.+..++||++ ..+|
T Consensus 120 ~~~~~~~~~~Df~~lA~a~G~~~~~~v 146 (202)
T PRK06163 120 GQPTLTSQTVDVVAIARGAGLENSHWA 146 (202)
T ss_pred CccCCCCCCCCHHHHHHHCCCceEEEe
Confidence 2211 1234688888999986 4444
No 91
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=97.98 E-value=1.1e-05 Score=81.73 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=50.6
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
..|++|.+++.|+|.++|.. +++|||++|||+++=.. -.|..|.+++|+-+++|+||++|.+
T Consensus 55 ~~GsmG~~lpaaiGa~la~p--------------~~~vv~i~GDG~f~m~~--~eL~Ta~~~~lpviivV~NN~~yg~ 116 (202)
T cd02006 55 QAGPLGWTVPAALGVAAADP--------------DRQVVALSGDYDFQFMI--EELAVGAQHRIPYIHVLVNNAYLGL 116 (202)
T ss_pred CccchhhhhHHHHhHHhhCC--------------CCeEEEEEeChHhhccH--HHHHHHHHhCCCeEEEEEeCchHHH
Confidence 45889999999999998842 57899999999996543 4566799999987788888888875
No 92
>PRK08266 hypothetical protein; Provisional
Probab=97.90 E-value=1.7e-05 Score=92.09 Aligned_cols=87 Identities=24% Similarity=0.306 Sum_probs=67.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.+++.|+|++++. .+..|+|++|||+++-+ .+.+..|.+++|+-+++|+|||+|.+-..
T Consensus 401 ~GsmG~~lp~aiGa~la~--------------p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 401 QGTLGYGFPTALGAKVAN--------------PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRR 464 (542)
T ss_pred CcccccHHHHHHHHHHhC--------------CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 388999999999998873 25689999999999987 47888999999987777888888875321
Q ss_pred hh----------h-hcchhHHHHHhccCceEEEE
Q 005021 278 TE----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....++.+..++||.+..+|
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 498 (542)
T PRK08266 465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRV 498 (542)
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe
Confidence 10 0 11246788888999887765
No 93
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=97.80 E-value=3.9e-05 Score=89.94 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=62.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|++|.+++.|+|.++|. .+.+|+|++|||+++ +.+..|+.|.+++|+-++||+||+.|.+-..
T Consensus 436 ~gsmG~~l~~aiGa~la~--------------~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~ 499 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVAR--------------PGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKH 499 (578)
T ss_pred ccccccHHHHHHHHHhhC--------------CCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEe
Confidence 378899999999998873 256899999999995 7788999999999964555555553332110
Q ss_pred ---------hhh--hcchhHHHHHhccCceEEEE
Q 005021 278 ---------TEI--AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ---------~~~--~~~~~~~~~~~a~G~~~~~v 300 (719)
... ....+..+..++||++..+|
T Consensus 500 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 533 (578)
T PRK06112 500 AETVKFGTHTDACHFAAVDHAAIARACGCDGVRV 533 (578)
T ss_pred ccccccCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence 000 11346788889999887765
No 94
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=97.78 E-value=4e-05 Score=75.71 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=62.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|.+|.+++.|+|.++|. +++|||++|||+++-. ...|..|.+++++-+++|+||++|++-...
T Consensus 51 g~mG~~l~~aiGa~la~---------------~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~ 113 (175)
T cd02009 51 SGIDGTLSTALGIALAT---------------DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLL 113 (175)
T ss_pred cchhhHHHHHHHHHhcC---------------CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheec
Confidence 66889999999999884 2459999999999755 456667888899877888888877752211
Q ss_pred ---------hhh----cchhHHHHHhccCceEEEE
Q 005021 279 ---------EIA----FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ---------~~~----~~~~~~~~~~a~G~~~~~v 300 (719)
... ...+..+..++||++..+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 148 (175)
T cd02009 114 PQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRV 148 (175)
T ss_pred cCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeC
Confidence 111 1346788888899887665
No 95
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=97.78 E-value=3.4e-05 Score=89.98 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=62.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.|++.|+|++++.. +.+|+|++|||+++ +....+..|..++|+=+++|+||+.|.+-..
T Consensus 414 ~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~~~~~ 477 (557)
T PRK08199 414 SGSMGYGLPAAIAAKLLFP--------------ERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYGTIRM 477 (557)
T ss_pred CccccchHHHHHHHHHhCC--------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 5899999999999988742 57899999999988 5557788899999964444555555664221
Q ss_pred -hhh----------hcchhHHHHHhccCceEEEE
Q 005021 278 -TEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 -~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
... ....+..+..++||++..+|
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 511 (557)
T PRK08199 478 HQEREYPGRVSGTDLTNPDFAALARAYGGHGETV 511 (557)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe
Confidence 100 01246888899999987765
No 96
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=97.77 E-value=3.4e-05 Score=90.24 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=65.0
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|++|.|++.|+|.++|. .+.+|+|++|||+++-+..-+.++.|.+++|+-++||+||++|.+-..
T Consensus 429 ~gsmG~~lp~aiGa~la~--------------p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~ 494 (569)
T PRK08327 429 AGGLGWALGAALGAKLAT--------------PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKE 494 (569)
T ss_pred CCCCCcchHHHHHHhhcC--------------CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchh
Confidence 479999999999988863 267899999999999886556799999999976666666667775321
Q ss_pred ----------------h-hh-h-cchhHHHHHhccCceEEEE
Q 005021 278 ----------------T-EI-A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ----------------~-~~-~-~~~~~~~~~~a~G~~~~~v 300 (719)
. .. . ...+..+..++||+...+|
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 536 (569)
T PRK08327 495 AVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERV 536 (569)
T ss_pred HHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEe
Confidence 0 00 1 1246777888888866554
No 97
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=97.70 E-value=7.2e-05 Score=87.64 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=64.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|+++|.. +.+|+|++|||+++-. .-.+..|..++|+-++||+||++|.+-..
T Consensus 407 ~gsmG~~~paAiGa~la~p--------------~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i~~ 470 (578)
T PRK06546 407 HGSMANALPHAIGAQLADP--------------GRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMVKL 470 (578)
T ss_pred cccccchhHHHHHHHHhCC--------------CCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccHHH
Confidence 5889999999999999842 5689999999999853 34578899999987777777777775311
Q ss_pred --------h-hh-hcchhHHHHHhccCceEEEE
Q 005021 278 --------T-EI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 --------~-~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
. +. ....+..+..++||.+...|
T Consensus 471 ~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v 503 (578)
T PRK06546 471 EMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRV 503 (578)
T ss_pred HHHhcCCCcccccCCCCCHHHHHHHCCCeeEEe
Confidence 0 01 12346788888888876665
No 98
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=97.67 E-value=6e-05 Score=88.21 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=65.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|++|.|++.|+|.++|. .+.+|+|++|||+++-. .. .|..|.+++|+-++||+||++|.+-...
T Consensus 424 g~mG~glpaAiGaala~--------------p~~~vv~i~GDGsf~m~-~~-eL~ta~r~~lpi~ivV~NN~~~~~i~~~ 487 (571)
T PRK07710 424 GTMGFGLPAAIGAQLAK--------------PDETVVAIVGDGGFQMT-LQ-ELSVIKELSLPVKVVILNNEALGMVRQW 487 (571)
T ss_pred ccccchHHHHHHHHHhC--------------CCCcEEEEEcchHHhhh-HH-HHHHHHHhCCCeEEEEEECchHHHHHHH
Confidence 78899999999999984 25689999999999843 34 4999999999878888888888763211
Q ss_pred ---------hh--h-cchhHHHHHhccCceEEEE
Q 005021 279 ---------EI--A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ---------~~--~-~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ...+..+..++||.+..+|
T Consensus 488 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 521 (571)
T PRK07710 488 QEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRI 521 (571)
T ss_pred HHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEE
Confidence 00 0 1246778888888877765
No 99
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.67 E-value=7.1e-05 Score=87.55 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=63.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|. .+.+|+|++|||+++ +....+..|.+++|+-++||+||++|.+...
T Consensus 421 ~gsmG~~lp~aiGa~lA~--------------p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~ 484 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK--------------EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLGMVRQ 484 (570)
T ss_pred cccccchhhHHHhhHhhc--------------CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence 388999999999999874 257899999999996 3344577889999986666777776765321
Q ss_pred hh-----------hhcchhHHHHHhccCceEEEE
Q 005021 278 TE-----------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~-----------~~~~~~~~~~~~a~G~~~~~v 300 (719)
.. .....+..+..++||.+..+|
T Consensus 485 ~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 518 (570)
T PRK06725 485 WQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRA 518 (570)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence 10 011346788888888877665
No 100
>PRK07586 hypothetical protein; Validated
Probab=97.66 E-value=7.2e-05 Score=86.39 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=65.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|++|.|++.|+|.++|.. +.+|+|++|||+++- ....|..|.+++|+-++||+||++|.+-..
T Consensus 384 ~g~mG~~lpaaiGa~lA~p--------------~r~Vv~i~GDGsf~m--~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~ 447 (514)
T PRK07586 384 GGAIGQGLPLATGAAVACP--------------DRKVLALQGDGSAMY--TIQALWTQARENLDVTTVIFANRAYAILRG 447 (514)
T ss_pred CcccccHHHHHHHHHHhCC--------------CCeEEEEEechHHHh--HHHHHHHHHHcCCCCEEEEEeCchhHHHHH
Confidence 3889999999999999842 678999999999874 456778889999987888889999975321
Q ss_pred h-----------------hhh-cchhHHHHHhccCceEEEE
Q 005021 278 T-----------------EIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~-----------------~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
. +.. ...+..+..++||++..+|
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V 488 (514)
T PRK07586 448 ELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRV 488 (514)
T ss_pred HHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEe
Confidence 0 000 1236777888888877665
No 101
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.66 E-value=6.3e-05 Score=88.07 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=63.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|+++|.. +.+|+|++|||+++-. ...|..|.+++|+-++||+||++|.+-.
T Consensus 419 ~~g~mG~~lp~aiGa~la~p--------------~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~ 482 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAHP--------------EATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVK 482 (574)
T ss_pred CcccccchhHHHHHHHhhcC--------------CCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHH
Confidence 35789999999999999842 5679999999999664 5888899999997566666666665311
Q ss_pred ---------ch-hhh--cchhHHHHHhccCceEEEE
Q 005021 277 ---------DT-EIA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ---------~~-~~~--~~~~~~~~~~a~G~~~~~v 300 (719)
+. ... ...+..+..++||.+..+|
T Consensus 483 ~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 518 (574)
T PRK06882 483 QWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQI 518 (574)
T ss_pred HHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEe
Confidence 10 011 1246788888899877765
No 102
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.63 E-value=9e-05 Score=86.58 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=63.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|.. +.+|+|++|||+++-. ..| |..|..++|+-+++|+||++|.+-..
T Consensus 413 ~g~mG~~l~~aiGa~la~p--------------~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~ 476 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAVP--------------DKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQ 476 (563)
T ss_pred cccccchHHHHHHHHHhCC--------------CCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHH
Confidence 3789999999999999842 5679999999999963 344 78899999987778888888775321
Q ss_pred hh---------hh---cchhHHHHHhccCceEEEE
Q 005021 278 TE---------IA---FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~---------~~---~~~~~~~~~~a~G~~~~~v 300 (719)
.. .. ...+..+..++||.+..+|
T Consensus 477 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 511 (563)
T PRK08527 477 WQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRV 511 (563)
T ss_pred HHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEE
Confidence 10 00 1236777888888776655
No 103
>PRK12474 hypothetical protein; Provisional
Probab=97.63 E-value=9.3e-05 Score=85.59 Aligned_cols=87 Identities=24% Similarity=0.261 Sum_probs=65.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|++|.|++.|+|.++|.. +++|+|++|||+++ +..-.|..|.+++|+-++||+||++|.+-..
T Consensus 388 ~gsmG~glpaAiGa~lA~p--------------~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~ 451 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAAP--------------DRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYAILNG 451 (518)
T ss_pred CCccCccHHHHHHHHHHCC--------------CCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcchHHHH
Confidence 4999999999999999842 67899999999997 4457788899999998888889988875321
Q ss_pred h---------h------h-hc--chhHHHHHhccCceEEEE
Q 005021 278 T---------E------I-AF--TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~------~-~~--~~~~~~~~~a~G~~~~~v 300 (719)
. + . .. ..+..+..++||.+..+|
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv 492 (518)
T PRK12474 452 ELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRA 492 (518)
T ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEe
Confidence 0 0 0 01 135777788888876665
No 104
>PRK07524 hypothetical protein; Provisional
Probab=97.63 E-value=7.7e-05 Score=86.61 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=63.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|. .+.+|+|++|||+++ +....+..|..++|+=++||+||++|.+-..
T Consensus 406 ~g~mG~~lp~aiGa~lA~--------------p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~g~i~~ 469 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA--------------PERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGYGEIRR 469 (535)
T ss_pred cccccchHHHHHHHHHhC--------------CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCchHHHHH
Confidence 489999999999999984 267899999999997 3334488999999986667777778874211
Q ss_pred ---------hhh-hcchhHHHHHhccCceEEEE
Q 005021 278 ---------TEI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ---------~~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.+. ....+..+..++||.+...|
T Consensus 470 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 502 (535)
T PRK07524 470 YMVARDIEPVGVDPYTPDFIALARAFGCAAERV 502 (535)
T ss_pred HHHHhcCCccccCCCCCCHHHHHHHCCCcEEEe
Confidence 011 11246778888888876665
No 105
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=97.59 E-value=0.00011 Score=85.98 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=63.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|.. +.+|+|++|||+++-. ..| +..|..++|+-++||+||++|.+-..
T Consensus 418 ~g~mG~~lpaaiGa~la~~--------------~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~ 481 (564)
T PRK08155 418 LGTMGFGLPAAIGAALANP--------------ERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQ 481 (564)
T ss_pred cccccchhHHHHHHHHhCC--------------CCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHH
Confidence 3789999999999999852 5679999999999964 455 77889999976667777777876432
Q ss_pred hh----------h-h-cchhHHHHHhccCceEEEE
Q 005021 278 TE----------I-A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~-~~~~~~~~~~a~G~~~~~v 300 (719)
.. . . ...+..+..++||.+...|
T Consensus 482 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 516 (564)
T PRK08155 482 QQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDL 516 (564)
T ss_pred HHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEe
Confidence 10 1 1 1246777888888776654
No 106
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=97.57 E-value=0.00014 Score=85.31 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=65.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|++|.|++.|+|.++|.. +++|+|++|||+++--. -.|..|.+++|+-++||+||++|.+-.
T Consensus 406 ~~G~mG~~lpaAiGa~la~p--------------~r~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~i~ 469 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAHP--------------GRQVVALSGDGGFSMLM--GDFLSLVQLKLPVKIVVFNNSVLGFVA 469 (574)
T ss_pred CcccccchHHHHHHHHHhCC--------------CCeEEEEecCcHHhccH--HHHHHHHHhCCCeEEEEEeCCccccHH
Confidence 34788999999999998742 57899999999996542 346678999998788888888887631
Q ss_pred ch---------hh-hcchhHHHHHhccCceEEEE
Q 005021 277 DT---------EI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~---------~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. +. ....+..+..++||.+..+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 503 (574)
T PRK09124 470 MEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRV 503 (574)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence 10 00 11246788888999887766
No 107
>PRK06154 hypothetical protein; Provisional
Probab=97.55 E-value=0.00015 Score=84.74 Aligned_cols=87 Identities=18% Similarity=0.098 Sum_probs=66.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|++|.|++.|+|.++|.. ++.|+|++|||+++-. ...|..|.+++|+-++||+||++|.+-..
T Consensus 430 ~gsmG~glpaaiGa~la~p--------------~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~ 493 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLARP--------------DALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDK 493 (565)
T ss_pred CcccccHHHHHHHHHHhCC--------------CCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeeh
Confidence 5789999999999999842 5789999999999644 45688999999988888889988885321
Q ss_pred hh---------hhcchhHHHHHhccCceEEEE
Q 005021 278 TE---------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~---------~~~~~~~~~~~~a~G~~~~~v 300 (719)
.. .....+..+..++||.+..+|
T Consensus 494 ~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V 525 (565)
T PRK06154 494 VMPVSTTKYRATDISGDYAAIARALGGYGERV 525 (565)
T ss_pred hhhhhcCcccccCCCCCHHHHHHHCCCeEEEE
Confidence 10 011246778888888877665
No 108
>PRK08322 acetolactate synthase; Reviewed
Probab=97.54 E-value=0.00014 Score=84.76 Aligned_cols=88 Identities=22% Similarity=0.267 Sum_probs=65.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|.++|.. +.+|+|++|||+++ +....|..|..++++-+++|+||++|.+-.
T Consensus 404 ~~g~mG~~lpaaiGa~la~p--------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~ 467 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVHP--------------DRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYGMIR 467 (547)
T ss_pred CcccccchhHHHHHHHHhCC--------------CCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcchHH
Confidence 35789999999999998842 56899999999998 444557778899998888889999988632
Q ss_pred ch---------hhh-cchhHHHHHhccCceEEEE
Q 005021 277 DT---------EIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~---------~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
.. ... ...+..+..++||.+..+|
T Consensus 468 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v 501 (547)
T PRK08322 468 WKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRV 501 (547)
T ss_pred HHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEe
Confidence 11 001 1246778888888877665
No 109
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=97.53 E-value=0.00012 Score=86.03 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=51.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
-|++|.|++.|+|.++|.. +++|||++|||+++-. ...|..|.+++|+-++||+||++|.+
T Consensus 417 ~gsmG~glpaaiGa~lA~p--------------dr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~ 477 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAADP--------------KRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGL 477 (588)
T ss_pred cccccchHhHHHhhhhhCC--------------CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHH
Confidence 3889999999999998842 6789999999999765 35677899999998888888888865
No 110
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.52 E-value=0.00016 Score=84.42 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=64.2
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|++|.|++.|+|.++|.. +++|+|++|||+++-.. -.|..|.+++|+-++||+|||+|.+-...
T Consensus 414 g~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~ 477 (561)
T PRK06048 414 GTMGYGFPAAIGAKVGKP--------------DKTVIDIAGDGSFQMNS--QELATAVQNDIPVIVAILNNGYLGMVRQW 477 (561)
T ss_pred cccccHHHHHHHHHHhCC--------------CCcEEEEEeCchhhccH--HHHHHHHHcCCCeEEEEEECCccHHHHHH
Confidence 789999999999999742 56899999999996553 56778899999888888898888753211
Q ss_pred ----------hhh--cchhHHHHHhccCceEEEE
Q 005021 279 ----------EIA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ----------~~~--~~~~~~~~~~a~G~~~~~v 300 (719)
... ...+..+..++||.+..+|
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 511 (561)
T PRK06048 478 QELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRV 511 (561)
T ss_pred HHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEE
Confidence 011 1246777888888776665
No 111
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=97.52 E-value=0.00014 Score=85.00 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=66.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +..|+|++|||+++--. -.|..|.+++|+-++||+||++|.+-..
T Consensus 417 ~g~mG~glpaaiGa~lA~p--------------~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~y~~i~~ 480 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIANP--------------DKEVILFVGDGGFQMTN--QELAILNIYKVPIKVVMLNNHSLGMVRQ 480 (566)
T ss_pred cccccchhhHhheeheecC--------------CCcEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCCchHHHH
Confidence 4889999999999998842 56799999999997553 5578888999998889999999986321
Q ss_pred ---------hh-h-h-cchhHHHHHhccCceEEEE
Q 005021 278 ---------TE-I-A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ---------~~-~-~-~~~~~~~~~~a~G~~~~~v 300 (719)
.. . . ...+..+..++||.+..+|
T Consensus 481 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 515 (566)
T PRK07282 481 WQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKF 515 (566)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEE
Confidence 11 1 1 1346788888898877665
No 112
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=97.52 E-value=0.00016 Score=83.97 Aligned_cols=88 Identities=22% Similarity=0.186 Sum_probs=64.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|.++|.. +.+|+|++|||+++-- .-.|..|..++|+-++||+||++|.+-.
T Consensus 406 ~~g~mG~~lpaaiGa~la~~--------------~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~ 469 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVRP--------------NTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDNGYNMVE 469 (539)
T ss_pred CccccccHHHHHHHHHHhCC--------------CCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 35689999999999998742 5679999999999764 3456779999998788888988887532
Q ss_pred ch-hh---------hcchhHHHHHhccCceEEEE
Q 005021 277 DT-EI---------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~-~~---------~~~~~~~~~~~a~G~~~~~v 300 (719)
.. .. ....+..+..++||.+..+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V 503 (539)
T TIGR02418 470 FQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRV 503 (539)
T ss_pred HHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEE
Confidence 11 00 11235677777788766655
No 113
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=97.52 E-value=0.0042 Score=68.56 Aligned_cols=181 Identities=19% Similarity=0.186 Sum_probs=125.3
Q ss_pred cccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCC
Q 005021 464 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 543 (719)
Q Consensus 464 IaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPn 543 (719)
=+|.++++++.|.+..| -+.+..|-+.=+.+|.+.|...+.+.+|++++.. .+.+....=||+....|+...|.. +
T Consensus 54 EsE~~a~s~v~GA~~aG--ar~~TaTSg~Gl~Lm~E~l~~a~~~~~P~Vi~~~-~R~~ps~g~p~~~dq~D~~~~r~~-g 129 (365)
T COG0674 54 ESEIGAISAVIGASYAG--ARAFTATSGQGLLLMAEALGLAAGTETPLVIVVA-QRPLPSTGLPIKGDQSDLMAARDT-G 129 (365)
T ss_pred ccHHHHHHHHHHHHhhC--cceEeecCCccHHHHHHHHHHHHhccCCeEEEEe-ccCcCCCcccccccHHHHHHHHcc-C
Confidence 36899999999999999 4999898888888999999999999999888763 455545444699999999998886 7
Q ss_pred eEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc--------------CCCCC-----CCCC----CCcccccccc---
Q 005021 544 ILMLRPADGNETAGAYKVAVA---NRKRPSILALS--------------RQKLP-----HLAG----TSIDGVEKGA--- 594 (719)
Q Consensus 544 l~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~--------------r~~~~-----~~~~----~~~~~~~~G~--- 594 (719)
..+++=+|.+|+..+-..|.+ +..-|+++.+. ++..+ .... ....+...|.
T Consensus 130 ~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (365)
T COG0674 130 FPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAV 209 (365)
T ss_pred ceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCC
Confidence 777777788888775544432 13568777631 11100 0000 0000011110
Q ss_pred ---------------------------------------EEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHH-HhCCCcE
Q 005021 595 ---------------------------------------YIISDNSSGNKPDVILIGTGSELEIAAKAAEEL-RKGGKAV 634 (719)
Q Consensus 595 ---------------------------------------~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L-~~~Gi~v 634 (719)
+.+... ...+++||++|+....+.+++..+ +++|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~---~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kv 286 (365)
T COG0674 210 PDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGY---EDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKV 286 (365)
T ss_pred CceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecC---CCcCEEEEEeccchHhHHHHHHHHHHhcCceE
Confidence 011110 146799999998887777776655 5889999
Q ss_pred EEEecCChhhHHHHHHH
Q 005021 635 RVVSFVSWELFDEQSDA 651 (719)
Q Consensus 635 ~VId~~~l~pld~~~~~ 651 (719)
.++.++.+.||+.+.+.
T Consensus 287 g~l~vr~~rPFp~~~i~ 303 (365)
T COG0674 287 GLLKVRTLRPFPAEEIR 303 (365)
T ss_pred EEEEEEEeCCCCHHHHH
Confidence 99999999999987653
No 114
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.49 E-value=0.00019 Score=84.38 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=64.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +++|||++|||+++-. .-.|..|.+++|+-++||+||++|.+-..
T Consensus 436 ~gsmG~glpaaiGa~lA~p--------------~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~~ 499 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAHP--------------DDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVRQ 499 (587)
T ss_pred cccccchHHHHHHHHHhCC--------------CCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHHH
Confidence 3789999999999999842 5689999999999755 36777889999987778888887765321
Q ss_pred ---------hhh-h--cchhHHHHHhccCceEEEE
Q 005021 278 ---------TEI-A--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ---------~~~-~--~~~~~~~~~~a~G~~~~~v 300 (719)
... . ...+..+..++||++..+|
T Consensus 500 ~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v 534 (587)
T PRK06965 500 WQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRI 534 (587)
T ss_pred HHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEE
Confidence 111 1 1236777888888877665
No 115
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.49 E-value=0.00018 Score=84.32 Aligned_cols=87 Identities=21% Similarity=0.205 Sum_probs=64.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +.+|+|++|||+++-. .-.|..|.+++|+=++||+||++|.+-..
T Consensus 422 ~gsmG~glpaAiGa~la~p--------------~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~ 485 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAFP--------------DQDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQ 485 (574)
T ss_pred cchhhchHHHHHHHHHhCC--------------CCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 3789999999999998842 5689999999999755 35677799999987788888888875221
Q ss_pred h---------h-hh--cchhHHHHHhccCceEEEE
Q 005021 278 T---------E-IA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~-~~--~~~~~~~~~~a~G~~~~~v 300 (719)
. . .. ...+..+..++||.+..+|
T Consensus 486 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 520 (574)
T PRK06466 486 WQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRI 520 (574)
T ss_pred HHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEE
Confidence 1 1 11 1236777778888776665
No 116
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.49 E-value=0.0064 Score=69.61 Aligned_cols=202 Identities=15% Similarity=0.163 Sum_probs=132.7
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcC--CEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEA--GVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~--pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
+-+++.+..|.-+..+|.|-+..| .+..+++=-.=+.++-|.+...+|... -++++...| - |.. +-|.-.|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G--~ral~~mKhVGlNvAsDpl~s~ay~Gv~GGlviv~aDD-p--g~~--SSqneqd 130 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAG--VRALVTMKHVGLNVASDPLMSLAYAGVTGGLVIVVADD-P--GMH--SSQNEQD 130 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcC--ceeeEEecccccccchhhhhhhhhcCccccEEEEEccC-C--Ccc--cccchhH
Confidence 567788999999999999999999 588888766667799999888777543 344443222 2 111 1133345
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC------CCCC-------CCCCCCcccc-ccccEEE
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR------QKLP-------HLAGTSIDGV-EKGAYII 597 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~r------~~~~-------~~~~~~~~~~-~~G~~~i 597 (719)
--++...-.+-|+.|+|++|+..+++.+.+- .+-|+++|... +.+. .......... ..|.|+.
T Consensus 131 sr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~ 210 (640)
T COG4231 131 SRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVR 210 (640)
T ss_pred hHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceee
Confidence 5566666777899999999999999988732 46799999632 1111 0000000001 1122221
Q ss_pred e-----------------------------cCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHH
Q 005021 598 S-----------------------------DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQ 648 (719)
Q Consensus 598 ~-----------------------------~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~ 648 (719)
. +-.+++..++-||+.|-....+.+| |++-|++..++-+-+..||+.+
T Consensus 211 ~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeA---l~~lgl~~~~lklg~~~Plp~~ 287 (640)
T COG4231 211 VPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEA---LEDLGLDDELLKLGTPYPLPEQ 287 (640)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHH---HHHcCCCceeEEecCCcCCCHH
Confidence 1 1000012689999999999888877 4455899999999999999998
Q ss_pred HHHhhhhhccCCCceEEEEccccc
Q 005021 649 SDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 649 ~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
.++ ..++. ...++|+||...
T Consensus 288 ~i~---~F~~g-~~~vlVVEE~~P 307 (640)
T COG4231 288 LIE---NFLKG-LERVLVVEEGEP 307 (640)
T ss_pred HHH---HHHhc-CcEEEEEecCCc
Confidence 764 23333 334799999865
No 117
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=97.48 E-value=0.00013 Score=85.16 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=61.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc-
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG- 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~- 276 (719)
-|++|.|++.|+|.++|.. +.+|+|++|||+++-.. . .|..|..++|+-+++|+||++|.+-.
T Consensus 411 ~g~mG~~l~aaiGa~la~~--------------~~~vv~~~GDG~f~~~~-~-eL~ta~~~~l~~~~vv~NN~~~~~~~~ 474 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAKP--------------ESTVICITGDGSFQMNL-Q-ELSTAVQYDIPVKILILNNRYLGMVRQ 474 (558)
T ss_pred cccccchhhHHHhhhhhCC--------------CCcEEEEEcchHHhccH-H-HHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 3789999999999988742 56799999999998743 3 67889999997555666666665321
Q ss_pred --------chhh-h--cchhHHHHHhccCceEEEE
Q 005021 277 --------DTEI-A--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 --------~~~~-~--~~~~~~~~~~a~G~~~~~v 300 (719)
+... . ...+..+..++||.+..+|
T Consensus 475 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 509 (558)
T TIGR00118 475 WQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRI 509 (558)
T ss_pred HHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEE
Confidence 0000 1 1246788888888876665
No 118
>PLN02573 pyruvate decarboxylase
Probab=97.48 E-value=0.00016 Score=84.77 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=64.6
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|++|.|++.|+|.++|.. +++|+|++|||+++- ..-.|..|.+++|+-++||+||++|.+..
T Consensus 426 ~~gsmG~glpaaiGa~lA~p--------------~r~vv~i~GDG~f~m--~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~ 489 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAAP--------------DKRVIACIGDGSFQV--TAQDVSTMIRCGQKSIIFLINNGGYTIEV 489 (578)
T ss_pred chhhhhhhhhHHHHHHHhCC--------------CCceEEEEeccHHHh--HHHHHHHHHHcCCCCEEEEEeCCceeEEE
Confidence 35889999999999998852 578999999999964 44678889999999888999999988643
Q ss_pred ch-----hhhcchhHHHHHhccC-----ceEEEE
Q 005021 277 DT-----EIAFTENVDKRFEGLG-----WHVIWV 300 (719)
Q Consensus 277 ~~-----~~~~~~~~~~~~~a~G-----~~~~~v 300 (719)
.. ......+..+..++|| ....+|
T Consensus 490 ~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V 523 (578)
T PLN02573 490 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKV 523 (578)
T ss_pred eecccCccccCCCCHHHHHHHhcCcCCceeEEEe
Confidence 11 1112245667777774 555544
No 119
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.47 E-value=0.0002 Score=84.19 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=65.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|. .++.|||++|||+++-.. -.|..|..++|+-++||+||++|.+-..
T Consensus 429 ~gsmG~glpaaiGa~lA~--------------p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpvi~vV~NN~~y~~i~~ 492 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH--------------PDALVIDIAGDASIQMCI--QEMSTAVQYNLPVKIFILNNQYMGMVRQ 492 (595)
T ss_pred chhhhhhHHHHHHHHHhC--------------CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 378999999999999974 257899999999997553 4588999999988888888888875321
Q ss_pred h---------h-hhc--chhHHHHHhccCceEEEE
Q 005021 278 T---------E-IAF--TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~-~~~--~~~~~~~~~a~G~~~~~v 300 (719)
. . ... ..+..+..++||.+..+|
T Consensus 493 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 527 (595)
T PRK09107 493 WQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRC 527 (595)
T ss_pred HHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEE
Confidence 1 1 111 246778888888877765
No 120
>PRK05858 hypothetical protein; Provisional
Probab=97.47 E-value=0.00018 Score=83.74 Aligned_cols=87 Identities=20% Similarity=0.139 Sum_probs=61.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|.. +++|||++|||+++-. .-.+..|.+++|+-++||+||+.|.+...
T Consensus 406 ~gsmG~~lp~aiGa~la~p--------------~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~ 469 (542)
T PRK05858 406 FGCLGTGPGYALAARLARP--------------SRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEKH 469 (542)
T ss_pred ccccccchhHHHHHHHhCC--------------CCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHHH
Confidence 4789999999999998742 5689999999999744 34666777899987888888888876321
Q ss_pred h-hh---------h-cchhHHHHHhccCceEEEE
Q 005021 278 T-EI---------A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~-~~---------~-~~~~~~~~~~a~G~~~~~v 300 (719)
. .. . ...+..+..++||....+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 503 (542)
T PRK05858 470 PMEALYGYDVAADLRPGTRYDEVVRALGGHGELV 503 (542)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe
Confidence 1 00 0 1235566667777665554
No 121
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.46 E-value=0.00018 Score=84.33 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=64.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +.+|+|++|||+++-. ...|..|.+++|+-++||+||++|.+-..
T Consensus 420 ~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~ 483 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAMP--------------DETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVKQ 483 (572)
T ss_pred cccccchhhHHHhhhhhCC--------------CCeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHHH
Confidence 3789999999999999842 5689999999999755 35688899999988888888888875321
Q ss_pred h----------hhh--cchhHHHHHhccCceEEEE
Q 005021 278 T----------EIA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~----------~~~--~~~~~~~~~~a~G~~~~~v 300 (719)
. ... ...+..+..++||.+..+|
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 518 (572)
T PRK08979 484 WQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRI 518 (572)
T ss_pred HHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEE
Confidence 1 011 1245677778888766655
No 122
>PLN02470 acetolactate synthase
Probab=97.46 E-value=0.00019 Score=84.25 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=64.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +..|+|++|||+++-.. -.|..|.+++|+-++||+||++|.+-..
T Consensus 425 ~g~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~v~ivV~NN~~yg~i~~ 488 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAANP--------------DAIVVDIDGDGSFIMNI--QELATIHVENLPVKIMVLNNQHLGMVVQ 488 (585)
T ss_pred cccccchHHHHHHHHHhCC--------------CCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 3889999999999999842 56799999999997653 6777889999987788888888764211
Q ss_pred ---------h-hhhc---------chhHHHHHhccCceEEEE
Q 005021 278 ---------T-EIAF---------TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ---------~-~~~~---------~~~~~~~~~a~G~~~~~v 300 (719)
. .... ..+..+..++||.+..+|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v 530 (585)
T PLN02470 489 WEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARV 530 (585)
T ss_pred HHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEE
Confidence 0 0110 136778888888876665
No 123
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=97.46 E-value=0.00023 Score=83.53 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=63.5
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|++|.|++.|+|.++|.. +++|+|++|||+++ +..-.|..|.+++|+-++||+||++|.+-.
T Consensus 428 ~~g~mG~glpaaiGaala~p--------------~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~ 491 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAHP--------------NELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQGMVR 491 (585)
T ss_pred cccchhhhHHHHHHHHHhCC--------------CCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 35889999999999998842 56899999999997 445677788899998777777777666421
Q ss_pred ch---------hh--h--cchhHHHHHhccCceEEEE
Q 005021 277 DT---------EI--A--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~---------~~--~--~~~~~~~~~~a~G~~~~~v 300 (719)
.. .. . ...+..+..++||.+..+|
T Consensus 492 ~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 528 (585)
T CHL00099 492 QWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRI 528 (585)
T ss_pred HHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEe
Confidence 10 00 0 1236777888888776655
No 124
>PRK07064 hypothetical protein; Provisional
Probab=97.46 E-value=0.00019 Score=83.55 Aligned_cols=87 Identities=25% Similarity=0.279 Sum_probs=64.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.|++.|+|.++|.. +.+|+|++|||+++-. .-.|..|..++|+-++||+||++|.+-..
T Consensus 404 ~g~mG~~lpaAiGa~lA~p--------------~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~ 467 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAGP--------------GRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIRN 467 (544)
T ss_pred CCccccccchhhhhhhhCc--------------CCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHHH
Confidence 3789999999999999842 5689999999999754 35777889999987777788888875321
Q ss_pred hh----------h-hcchhHHHHHhccCceEEEE
Q 005021 278 TE----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....+..+..++||.+...|
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 501 (544)
T PRK07064 468 IQDAQYGGRRYYVELHTPDFALLAASLGLPHWRV 501 (544)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe
Confidence 10 0 11346778888888876655
No 125
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=97.46 E-value=0.00019 Score=84.06 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=65.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +++|+|++|||+++-. .-.|..+.+++|+-++||+|||+|.+-..
T Consensus 407 ~gsmG~glpaAiGa~la~p--------------~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~ 470 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNYP--------------DRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKD 470 (575)
T ss_pred cchhhchHHHHHHHHHhCC--------------CCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 4889999999999888742 5689999999999875 34578899999987778899999985321
Q ss_pred h-----h----h-hcchhHHHHHhccCceEEEE
Q 005021 278 T-----E----I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~-----~----~-~~~~~~~~~~~a~G~~~~~v 300 (719)
. . . ....+..+..++||.+..+|
T Consensus 471 ~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v 503 (575)
T TIGR02720 471 EQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRV 503 (575)
T ss_pred HHHHhCCCcccccCCCCCHHHHHHHCCCEEEEe
Confidence 1 0 0 11346788888888776655
No 126
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.45 E-value=0.00022 Score=83.62 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=64.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +..|+|++|||+++-. .-.|..|.+++|+-++||+||++|.+-..
T Consensus 420 ~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~ 483 (574)
T PRK07979 420 LGTMGFGLPAALGVKMALP--------------EETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQ 483 (574)
T ss_pred ccchhhHHHHHHHHHHhCC--------------CCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHH
Confidence 3789999999999999842 5689999999999754 45677899999987888888888875221
Q ss_pred h---------h-hh--cchhHHHHHhccCceEEEE
Q 005021 278 T---------E-IA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~-~~--~~~~~~~~~~a~G~~~~~v 300 (719)
. . .. ...+..+..++||....+|
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v 518 (574)
T PRK07979 484 WQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQI 518 (574)
T ss_pred HHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEE
Confidence 1 0 11 1246777888888766655
No 127
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=97.45 E-value=0.00017 Score=84.76 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=62.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|+++|.. +.+|||++|||+++-. .-.+..|.+++|+-++||+||++|.+-..
T Consensus 418 ~gsmG~~lpaaiGa~la~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~ 481 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAKP--------------DANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQ 481 (586)
T ss_pred ccccccchhHHHhhhhhcC--------------CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 3789999999999998842 4679999999999844 34577888999986777778777764221
Q ss_pred h---------hhh---cchhHHHHHhccCceEEEE
Q 005021 278 T---------EIA---FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~~~---~~~~~~~~~~a~G~~~~~v 300 (719)
. ... ...+..+..++||.+..+|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 516 (586)
T PRK06276 482 WQNLYYGKRQSEVHLGETPDFVKLAESYGVKADRV 516 (586)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEE
Confidence 1 001 1246777888888776665
No 128
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=97.42 E-value=0.00021 Score=83.87 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=64.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +..|+|++|||+++-.. -.|..|.+++|+-++||+||++|.+-..
T Consensus 429 ~g~mG~~lpaaiGa~la~p--------------~~~Vv~i~GDG~f~m~~--~eL~Tavr~~lpvi~vV~NN~~yg~i~~ 492 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAAP--------------DRPVVAYAGDGAWGMSM--NEIMTAVRHDIPVTAVVFRNRQWGAEKK 492 (579)
T ss_pred cccccchHHHHHhhhhhCC--------------CCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECcchHHHHH
Confidence 4789999999999999742 56899999999997653 5677899999998889999999875321
Q ss_pred hh----------h-hcc-hhHHHHHhccCceEEEE
Q 005021 278 TE----------I-AFT-ENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~~~-~~~~~~~~a~G~~~~~v 300 (719)
.. . ... .+..+..++||.+..+|
T Consensus 493 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v 527 (579)
T TIGR03457 493 NQVDFYNNRFVGTELESELSFAGIADAMGAKGVVV 527 (579)
T ss_pred HHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEE
Confidence 10 0 011 26677777787766554
No 129
>PRK11269 glyoxylate carboligase; Provisional
Probab=97.42 E-value=0.00019 Score=84.40 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=49.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
..|++|.|++.|+|.++|.. +..|+|++|||+++-.. -.+..|.+++|+-++||+||++|.+
T Consensus 417 ~~G~mG~glpaAiGa~la~p--------------~r~Vv~i~GDG~f~m~~--~eL~Ta~~~~lpv~~vV~NN~~~g~ 478 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAADP--------------DRNVVALSGDYDFQFLI--EELAVGAQFNLPYIHVLVNNAYLGL 478 (591)
T ss_pred ccccccchhhhHHhhhhhCC--------------CCcEEEEEccchhhcCH--HHHHHHHHhCCCeEEEEEeCCchhH
Confidence 35889999999999999742 56899999999996542 3466788999987888888887765
No 130
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=97.42 E-value=0.00014 Score=80.90 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=53.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-||.|-.++.|+|.++|.+ ++|++.++|||++|- .---+...-+|+|+++||++||++|.|..-
T Consensus 410 WGSIG~t~pAalGa~~A~~--------------drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~ 473 (557)
T COG3961 410 WGSIGYTLPAALGAALAAP--------------DRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERA 473 (557)
T ss_pred hhhcccccHhhhhhhhcCC--------------CccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEeh
Confidence 5788999999999999864 789999999999974 223355556889999999999999998654
Q ss_pred h
Q 005021 278 T 278 (719)
Q Consensus 278 ~ 278 (719)
.
T Consensus 474 I 474 (557)
T COG3961 474 I 474 (557)
T ss_pred h
Confidence 4
No 131
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=97.39 E-value=0.00025 Score=83.11 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=64.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +.+|+|++|||+++=.. -.|..|..++|+-++||+||++|.+-..
T Consensus 420 ~g~mG~glpaAiGa~la~p--------------~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~ivV~NN~~yg~i~~ 483 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLARP--------------DKVVVDLDGDGSFLMTG--TNLATAVDEHIPVISVIFDNRTLGLVRQ 483 (572)
T ss_pred cccccchhHHHHHHHHhCC--------------CCeEEEEEccchHhcch--HHHHHHHHhCCCeEEEEEECCchHHHHH
Confidence 4899999999999999842 56899999999997654 4667888999987888888888886431
Q ss_pred hh----------h-h-cchhHHHHHhccCceEEEE
Q 005021 278 TE----------I-A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~-~~~~~~~~~~a~G~~~~~v 300 (719)
.. . . ...+..+..++||.+..+|
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 518 (572)
T PRK06456 484 VQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNV 518 (572)
T ss_pred HHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEe
Confidence 10 0 0 1246777778888766654
No 132
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=97.38 E-value=0.0002 Score=71.93 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=45.8
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
|.+|.|++.|+|.++|. .+.+|||++|||++. .+....+..|.+++++=+++|+||+.|.+
T Consensus 51 g~mG~glpaAiGa~la~--------------p~r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lpv~iiVlnN~~yg~ 111 (193)
T cd03375 51 TLHGRALAVATGVKLAN--------------PDLTVIVVSGDGDLA-AIGGNHFIHAARRNIDITVIVHNNQIYGL 111 (193)
T ss_pred hhhccHHHHHHHHHHhC--------------CCCeEEEEeccchHh-hccHHHHHHHHHhCCCeEEEEEcCccccc
Confidence 77899999999999874 267899999999941 33345666778889875556667666654
No 133
>PRK08611 pyruvate oxidase; Provisional
Probab=97.38 E-value=0.00028 Score=82.71 Aligned_cols=87 Identities=20% Similarity=0.165 Sum_probs=65.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|. .+..|+|++|||+++-. ...|..|.+++|+-++||+||++|.+-..
T Consensus 407 ~g~mG~glpaaiGa~la~--------------p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~ 470 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF--------------PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKY 470 (576)
T ss_pred chhhhhhHHHHHHHHHhC--------------CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 488999999999999864 25679999999999865 45667899999987888899999885321
Q ss_pred hh---------h-hcchhHHHHHhccCceEEEE
Q 005021 278 TE---------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~---------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....+..+..++||.+..+|
T Consensus 471 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 503 (576)
T PRK08611 471 EQQAAGELEYAIDLSDMDYAKFAEACGGKGYRV 503 (576)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe
Confidence 10 0 11346788888888877765
No 134
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=97.38 E-value=0.00024 Score=82.60 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=61.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +.+|+|++|||+++-. ...|..|.+++|+-++||+|||+|.+-..
T Consensus 403 ~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~ 466 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTACP--------------NRRVILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERA 466 (539)
T ss_pred hhhhhhHHHHHHHHHhcCC--------------CCCeEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEe
Confidence 4889999999999998742 5789999999999644 46788899999998899999999875321
Q ss_pred h-h------hhcchhHHHHHhccCce
Q 005021 278 T-E------IAFTENVDKRFEGLGWH 296 (719)
Q Consensus 278 ~-~------~~~~~~~~~~~~a~G~~ 296 (719)
. . .....+..+..++||.+
T Consensus 467 ~~~~~~~~~~~~~~df~~la~a~G~~ 492 (539)
T TIGR03393 467 IHGAEQRYNDIALWNWTHLPQALSLD 492 (539)
T ss_pred ecCCCCCcCcCCCCCHHHHHHHcCCC
Confidence 1 0 11124566677777763
No 135
>PRK08617 acetolactate synthase; Reviewed
Probab=97.36 E-value=0.00027 Score=82.41 Aligned_cols=87 Identities=21% Similarity=0.159 Sum_probs=62.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.|++.|+|.++|.. +..|+|++|||+++-. .-.|..|..++|+-++||+||++|.+-..
T Consensus 413 ~g~mG~~lpaaiGa~la~p--------------~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~ 476 (552)
T PRK08617 413 MQTLGVALPWAIAAALVRP--------------GKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDGHYNMVEF 476 (552)
T ss_pred cccccccccHHHhhHhhcC--------------CCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECCccchHHH
Confidence 4789999999999998742 5689999999999844 45667799999986778888888875321
Q ss_pred hhh----------hcchhHHHHHhccCceEEEE
Q 005021 278 TEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
... ....+..+..++||.+..+|
T Consensus 477 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 509 (552)
T PRK08617 477 QEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRV 509 (552)
T ss_pred HHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEE
Confidence 100 01235667777777766554
No 136
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=97.35 E-value=0.00042 Score=80.81 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=65.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. .+++|+|++|||+++-. ...|..|.+++|+-++||+||++|.+-..
T Consensus 395 ~g~mG~glpaaiGa~la~p-------------~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~ 459 (549)
T PRK06457 395 LGSMGIGVPGSVGASFAVE-------------NKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKF 459 (549)
T ss_pred cchhhhhHHHHHHHHhcCC-------------CCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHH
Confidence 5899999999999998741 14689999999999755 35567899999988888899999875321
Q ss_pred h---------hh-hcchhHHHHHhccCceEEEE
Q 005021 278 T---------EI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
. +. ....+..+..++||.+..+|
T Consensus 460 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 492 (549)
T PRK06457 460 EQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRL 492 (549)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe
Confidence 0 00 11236777788888876665
No 137
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=97.35 E-value=0.00016 Score=84.64 Aligned_cols=86 Identities=15% Similarity=0.051 Sum_probs=60.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.+++.|+|.++| . +++|+|++|||+++-. .-.+..|..++|+-++||+||++|.+-..
T Consensus 424 ~~~~G~~lpaaiGaala-~--------------~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~ 486 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-S--------------AKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSL 486 (568)
T ss_pred ccchhhHHHHHHHHHhc-C--------------CCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccC
Confidence 36788999999999987 2 4569999999999954 23466688999987888888888774321
Q ss_pred h---------hh----hcchhHHHHHhccCceEEEE
Q 005021 278 T---------EI----AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~~----~~~~~~~~~~~a~G~~~~~v 300 (719)
. +. ....+..+..++||++..+|
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V 522 (568)
T PRK07449 487 LPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRP 522 (568)
T ss_pred CCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCC
Confidence 1 00 11235677777888765443
No 138
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=97.35 E-value=0.00028 Score=82.22 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=63.3
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|++|.|++.|+|.++|.. +..|+|++|||+++-.. -.|..|.+++++=+++|+||++|.+-...
T Consensus 401 g~mG~glpaAiGa~la~p--------------~~~vv~i~GDG~f~~~~--~eL~ta~~~~l~v~ivV~NN~~~~~~~~~ 464 (548)
T PRK08978 401 GTMGFGLPAAIGAQVARP--------------DDTVICVSGDGSFMMNV--QELGTIKRKQLPVKIVLLDNQRLGMVRQW 464 (548)
T ss_pred hhhhchHHHHHHHHHhCC--------------CCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHHHHH
Confidence 889999999999998842 56899999999997653 45778889999877788888888753211
Q ss_pred h---------hh---cchhHHHHHhccCceEEEE
Q 005021 279 E---------IA---FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ~---------~~---~~~~~~~~~~a~G~~~~~v 300 (719)
. .. ...+..+..++||.+..+|
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 498 (548)
T PRK08978 465 QQLFFDERYSETDLSDNPDFVMLASAFGIPGQTI 498 (548)
T ss_pred HHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEE
Confidence 0 01 1235777778888776665
No 139
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=97.35 E-value=0.00029 Score=72.99 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=43.6
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCC-CC
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNH-IS 273 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~-~s 273 (719)
.|++|.|++.|+|.+++. .+..|||++|||++ -.+....|..|.+++++ +++||-||+ ++
T Consensus 61 ~gsmG~GlpaAiGa~~a~--------------p~r~VV~i~GDG~~-~~m~~~eL~ta~~~~~p-v~~vVlNN~~yg 121 (235)
T cd03376 61 AAAVASGIEAALKALGRG--------------KDITVVAFAGDGGT-ADIGFQALSGAAERGHD-ILYICYDNEAYM 121 (235)
T ss_pred HHHHHHHHHHHHHHhccC--------------CCCeEEEEEcCchH-HhhHHHHHHHHHHcCCC-eEEEEECCcccc
Confidence 468888888888875542 25789999999995 33456778899999986 555555554 44
No 140
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.34 E-value=0.00032 Score=82.84 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=62.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|.. ++.|||++|||+++ +..-.|..|.+++|+=++||+||+.|.+-..
T Consensus 433 ~g~mG~glpaAiGA~lA~p--------------~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~ 496 (616)
T PRK07418 433 LGTMGFGMPAAMGVKVALP--------------DEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQGMVRQ 496 (616)
T ss_pred ccccccHHHHHHHHHHhCC--------------CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcchHHHH
Confidence 4889999999999998742 56799999999998 4445577899999986667777777764221
Q ss_pred hh----------h-h--cchhHHHHHhccCceEEEE
Q 005021 278 TE----------I-A--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~--~~~~~~~~~~a~G~~~~~v 300 (719)
.. . . ...+..+..++||.+..+|
T Consensus 497 ~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V 532 (616)
T PRK07418 497 WQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVI 532 (616)
T ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEe
Confidence 10 0 0 1245777788888777665
No 141
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=97.31 E-value=0.00041 Score=81.65 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=60.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhc-----CCCcEEEEEeCCCC
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL-----GLGKLIAFYDDNHI 272 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~-----~L~nli~ivddN~~ 272 (719)
-|++|.|++.|+|.++|.. +++|+|++|||+++-... ..|..|.++ +|+-++||+||++|
T Consensus 414 ~g~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~ 478 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAHP--------------DRPVIALVGDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDL 478 (597)
T ss_pred cccccchHHHHHHHHHhCC--------------CCcEEEEEcchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcc
Confidence 3789999999999999842 578999999999954422 334444555 88767777777777
Q ss_pred Ccccch---------h-h---hcchhHHHHHhccCceEEEE
Q 005021 273 SIDGDT---------E-I---AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 273 sis~~~---------~-~---~~~~~~~~~~~a~G~~~~~v 300 (719)
.+-... . . ....+..+..++||+...+|
T Consensus 479 ~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 519 (597)
T PRK08273 479 NQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRV 519 (597)
T ss_pred hHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEE
Confidence 542111 0 0 11245788889999887776
No 142
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=97.30 E-value=0.00032 Score=82.43 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=64.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|.+|.|++.|+|.++|.. +++|+|++|||+++-. ..| +..|.+++|+-++||+||++|.+-.
T Consensus 433 ~~g~mG~glp~aiGa~la~p--------------~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~ 496 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIACP--------------DRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEK 496 (588)
T ss_pred cccccccHHHHHHHHHHhCC--------------CCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHH
Confidence 34889999999999998742 5689999999999887 454 5579999998777777888887532
Q ss_pred chh----------hhc--chhHHHHHhccCceEEEE
Q 005021 277 DTE----------IAF--TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~----------~~~--~~~~~~~~~a~G~~~~~v 300 (719)
... ... ..++.+..++||.+..+|
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 532 (588)
T PRK07525 497 KNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVV 532 (588)
T ss_pred HHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEE
Confidence 110 001 236777788888776654
No 143
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=97.27 E-value=0.00055 Score=79.54 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|++|.|++.|+|.++|. +++++|++|||+++- ..-.|..|.+++|+-++||+||++|.+-...
T Consensus 403 g~mG~glpaaiGa~lA~---------------~~r~v~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~ 465 (535)
T TIGR03394 403 AGMGFGVPAGIGAQCTS---------------GKRILTLVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRVF 465 (535)
T ss_pred chhhhHHHHHHHHHhCC---------------CCCeEEEEeChHHHh--HHHHHHHHHHcCCCcEEEEEECCccceeehh
Confidence 88999999999999883 235688999999964 4567888999999988899999998864321
Q ss_pred h------hhcchhHHHHHhccCceEEEE
Q 005021 279 E------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ~------~~~~~~~~~~~~a~G~~~~~v 300 (719)
. .....+..+..++||.+..+|
T Consensus 466 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v 493 (535)
T TIGR03394 466 QPESAFNDLDDWRFADMAAGMGGDGVRV 493 (535)
T ss_pred ccCCCcccCCCCCHHHHHHHcCCCceEe
Confidence 1 112357788888888876665
No 144
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=97.16 E-value=0.00052 Score=81.03 Aligned_cols=87 Identities=18% Similarity=0.285 Sum_probs=63.6
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +..|+|++|||+++-. .-.|..|.+++|+-++||+||++|.+-..
T Consensus 446 ~G~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~ 509 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGRP--------------DKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQ 509 (612)
T ss_pred cccccchhhhHHhhhccCC--------------CCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHH
Confidence 4789999999999998842 5679999999999644 46777889999987888888888875321
Q ss_pred hh----------hh-c-----chhHHHHHhccCceEEEE
Q 005021 278 TE----------IA-F-----TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~~-~-----~~~~~~~~~a~G~~~~~v 300 (719)
.. .. . ..+..+..++||....+|
T Consensus 510 ~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V 548 (612)
T PRK07789 510 WQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRC 548 (612)
T ss_pred HHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEE
Confidence 10 00 0 135677778888766655
No 145
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=97.14 E-value=0.00097 Score=77.82 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=61.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc--
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID-- 275 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis-- 275 (719)
-|++|.|++.|+|.++|. +++|+|++|||+++-.. ..|..|.+++|+-++||+||++|...
T Consensus 416 ~gsmG~~lpaaiGaala~---------------~~~vv~i~GDGsf~m~~--~EL~Ta~r~~l~v~~vV~NN~~~~~~~~ 478 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVET---------------GKPVVALEGDSAFGFSG--MEVETICRYNLPVCVVIFNNGGIYRGDD 478 (554)
T ss_pred CCcCCchHHHHHHHHhcC---------------CCcEEEEEcCchhcccH--HHHHHHHHcCCCEEEEEEeChhhhhhhh
Confidence 388999999999999972 35799999999997653 34778889999877777777766221
Q ss_pred ----c--chhhh--cchhHHHHHhccCceEEEE
Q 005021 276 ----G--DTEIA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ----~--~~~~~--~~~~~~~~~~a~G~~~~~v 300 (719)
+ ..... ...+..+..++||.+..+|
T Consensus 479 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v 511 (554)
T TIGR03254 479 VNVVGADPAPTVLVHGARYDKMMKAFGGVGYNV 511 (554)
T ss_pred hhhcCCCCCccccCCCCCHHHHHHHCCCeEEEe
Confidence 0 00011 2346778888888876665
No 146
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=97.14 E-value=0.00083 Score=78.67 Aligned_cols=86 Identities=22% Similarity=0.214 Sum_probs=60.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC--Ccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SID 275 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~--sis 275 (719)
.|++|.|++.|+|.++|. ++.|+|++|||+++=-. ..|..|.+++|+-++||+||+++ ...
T Consensus 423 ~gsmG~glpaaiGa~la~---------------~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~~~~~~~~ 485 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVET---------------GKPVVAIEGDSAFGFSG--MEVETICRYNLPVTVVIFNNGGIYRGDD 485 (569)
T ss_pred CccccccHHHHHHHHhcC---------------CCcEEEEecCccccccH--HHHHHHHHcCCCEEEEEEeChhHHHHHH
Confidence 488999999999999872 35699999999997553 34778899999766666666654 110
Q ss_pred ----c--ch-hh--hcchhHHHHHhccCceEEEE
Q 005021 276 ----G--DT-EI--AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ----~--~~-~~--~~~~~~~~~~~a~G~~~~~v 300 (719)
. .. .. ....+..+..++||+...+|
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 519 (569)
T PRK09259 486 VNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNV 519 (569)
T ss_pred HHhhcCCCccccccCCCCCHHHHHHHCCCeEEEE
Confidence 0 00 01 11346778888889877665
No 147
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.07 E-value=0.0011 Score=77.05 Aligned_cols=89 Identities=25% Similarity=0.281 Sum_probs=63.0
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
..-|.+|.|++.|+|.++|.. +..|+|++|||+++ +....|..|..++++=+++|+||+.|.+-
T Consensus 405 ~~~GtMG~glPaAIGAkla~P--------------~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v 468 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAAP--------------DRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYGMV 468 (550)
T ss_pred CCCccccchHHHHHHHHhhCC--------------CCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCccccc
Confidence 356889999999999998742 57899999999986 44667778889999545555666656643
Q ss_pred cchh-hh---------cchh-HHHHHhccCceEEEE
Q 005021 276 GDTE-IA---------FTEN-VDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ~~~~-~~---------~~~~-~~~~~~a~G~~~~~v 300 (719)
.... .. .... ..+..++||.+..+|
T Consensus 469 ~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v 504 (550)
T COG0028 469 RQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRV 504 (550)
T ss_pred hHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEe
Confidence 2221 11 1122 778889999988776
No 148
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=97.02 E-value=0.0018 Score=66.85 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=78.8
Q ss_pred ccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCC
Q 005021 463 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMP 542 (719)
Q Consensus 463 GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iP 542 (719)
.-.|..+++++.|.|..|. |.++.+=+.=+.++.|.|...+...+|++++.. .+.+.+..+++|+...|+-+.+. -
T Consensus 42 ~E~E~~A~~~~~GAs~aG~--ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~-~R~g~~~g~~~~~~q~D~~~~~d-~ 117 (230)
T PF01855_consen 42 AESEHAAMEAAIGASAAGA--RAMTATSGPGLNLMAEPLYWAAGTELPIVIVVV-QRAGPSPGLSTQPEQDDLMAARD-S 117 (230)
T ss_dssp -SSHHHHHHHHHHHHHTT----EEEEEECCHHHHHCCCHHHHHHTT--EEEEEE-EB---SSSB--SB-SHHHHHTTT-S
T ss_pred ecchHHHHHHHHHHHhcCC--ceEEeecCCcccccHhHHHHHHHcCCCEEEEEE-ECCCCCCCCcCcCChhHHHHHHh-c
Confidence 4679999999999999994 999988777788888998888999999888763 45555555789999999888774 5
Q ss_pred CeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc
Q 005021 543 NILMLRPADGNETAGAYKVAVA---NRKRPSILALS 575 (719)
Q Consensus 543 nl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~ 575 (719)
++.|+.|+|.+|+..+...|.+ +...|++++..
T Consensus 118 ~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~D 153 (230)
T PF01855_consen 118 GWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFD 153 (230)
T ss_dssp S-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred CeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 6779999999999998877752 24689998874
No 149
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=97.02 E-value=0.001 Score=69.12 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=56.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC-hhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM-EGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~-eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.|.+|.|++.|+|.++|..... . .+..|||+.|||++. -| +.|-+ .+..++++=+++|+||+.+..-+
T Consensus 63 ~g~mG~GlpaAiGA~~a~~~~~----~-----p~~~Vv~i~GDG~~~~~g-~~~l~-ta~~~~l~i~ivVlNN~~yg~~~ 131 (237)
T cd02018 63 ANAVASGLKRGLKARFPKDREL----D-----KKKDVVVIGGDGATYDIG-FGALS-HSLFRGEDITVIVLDNEVYSNTG 131 (237)
T ss_pred HHHHHHHHHHHHHhhccccccc----C-----CCCcEEEEeCchHHHhcc-HHHHH-HHHHcCCCeEEEEECCccccCCC
Confidence 4899999999999988732110 1 267899999999874 23 22333 33458886455556666555332
Q ss_pred chhh-----------------hcchhHHHHHhccCceEEE
Q 005021 277 DTEI-----------------AFTENVDKRFEGLGWHVIW 299 (719)
Q Consensus 277 ~~~~-----------------~~~~~~~~~~~a~G~~~~~ 299 (719)
.... ....++.+..+++|...+.
T Consensus 132 ~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~ 171 (237)
T cd02018 132 GQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVA 171 (237)
T ss_pred CCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEE
Confidence 1110 1124688888888887664
No 150
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.01 E-value=0.00088 Score=78.80 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=61.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.|++.|+|.++|. .+.+|+|++|||++.-.- ...|..|.+++++=+++|+||+.+.+-+.
T Consensus 402 ~~~mG~~~~~AiGa~~a~--------------p~~~Vv~i~GDG~f~~~g-~~eL~tav~~~~~i~~vVlnN~~~g~~~~ 466 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAG--------------EKQRIVAFIGDSTFFHTG-IPGLINAVYNKANITVVILDNRITAMTGH 466 (595)
T ss_pred eeccCchHHHHhhhhhcC--------------CCCCEEEEeccchhhhcC-HHHHHHHHHcCCCeEEEEEcCcceeccCC
Confidence 588999999999999873 256799999999997321 12445588888875667777777776442
Q ss_pred hhh-----------hcchhHHHHHhccCceEEEE
Q 005021 278 TEI-----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~~-----------~~~~~~~~~~~a~G~~~~~v 300 (719)
... ....++.+..+++|++...|
T Consensus 467 q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v 500 (595)
T TIGR03336 467 QPNPGTGVTGMGEATKEISIEELCRASGVEFVEV 500 (595)
T ss_pred CCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEE
Confidence 110 01236788888899887765
No 151
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=96.89 E-value=0.0011 Score=71.03 Aligned_cols=61 Identities=23% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
|..|.+++.|+|+++|.. +..|||+.|||++. ++....|..|.+.+++=+++|+||+.|+.
T Consensus 70 g~mG~alpaAiGaklA~p--------------d~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~ 130 (301)
T PRK05778 70 TLHGRAIAFATGAKLANP--------------DLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGL 130 (301)
T ss_pred hhhccHHHHHHHHHHHCC--------------CCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhc
Confidence 557999999999998842 67899999999972 22234566788999875556666666654
No 152
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.83 E-value=0.0022 Score=67.93 Aligned_cols=84 Identities=17% Similarity=0.071 Sum_probs=55.9
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc-ccChhHHHHHHHHhhhcCCCcEEEEEeCC-CCCccc
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAFYDDN-HISIDG 276 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG-~~~eG~~~EAln~A~~~~L~nli~ivddN-~~sis~ 276 (719)
|..|.+++.|+|+++|.. +..|||++||| ++.-|. ..|..|.+.+++ +++|+-|| .|..-+
T Consensus 59 ~~~G~alp~A~GaklA~P--------------d~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~-i~vIV~nN~~ygmtg 121 (279)
T PRK11866 59 GIHGRVLPIATGVKWANP--------------KLTVIGYGGDGDGYGIGL--GHLPHAARRNVD-ITYIVSNNQVYGLTT 121 (279)
T ss_pred cccccHHHHHHHHHHHCC--------------CCcEEEEECChHHHHccH--HHHHHHHHHCcC-cEEEEEEChhhhhhc
Confidence 456999999999999842 56799999999 576663 457788999986 55555444 444322
Q ss_pred -----ch--hh----h--c----chhHHHHHhccCceEEE
Q 005021 277 -----DT--EI----A--F----TENVDKRFEGLGWHVIW 299 (719)
Q Consensus 277 -----~~--~~----~--~----~~~~~~~~~a~G~~~~~ 299 (719)
.+ +. . . ..++.+..+++|...+.
T Consensus 122 gQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va 161 (279)
T PRK11866 122 GQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVA 161 (279)
T ss_pred ccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEE
Confidence 11 00 0 0 02667777888876554
No 153
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=96.79 E-value=0.0014 Score=69.40 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=43.5
Q ss_pred CcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 200 PLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 200 ~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
+.|.+++.|+|+++|.. +..|||++|||+++- +.-..+..|.+++++=+++|+||+.|.+
T Consensus 69 ~~G~alPaAiGaklA~P--------------dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGm 128 (277)
T PRK09628 69 THGRAVAYATGIKLANP--------------DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGL 128 (277)
T ss_pred ccccHHHHHHHHHHHCC--------------CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhc
Confidence 45899999999999842 678999999999753 2222344578888875666666666665
No 154
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=96.78 E-value=0.0012 Score=70.22 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=42.8
Q ss_pred cchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 201 lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
.|.+++.|+|+++|. .+..|||++|||++ -++....+..|.+.+++=+++|+||+.|++
T Consensus 55 mG~alPaAiGaklA~--------------Pd~~VVai~GDG~f-~~mg~~eL~tA~r~nl~I~vIVlNN~~yGm 113 (287)
T TIGR02177 55 HGRALPVATGIKLAN--------------PHLKVIVVGGDGDL-YGIGGNHFVAAGRRNVDITVIVHDNQVYGL 113 (287)
T ss_pred cccHHHHHHHHHHHC--------------CCCcEEEEeCchHH-HhccHHHHHHHHHhCcCeEEEEEECHHHHh
Confidence 489999999999874 26789999999996 334455677888999864444445544443
No 155
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=96.69 E-value=0.0015 Score=69.53 Aligned_cols=60 Identities=23% Similarity=0.260 Sum_probs=46.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccc-cChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC-QMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~-~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
|..|.+++.|+|+++|. .+..|||++|||+ ++-| ...+..|..++++=+++|+||+.|.+
T Consensus 69 g~mG~alpaAiGaklA~--------------Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGm 129 (286)
T PRK11867 69 TIHGRALAIATGLKLAN--------------PDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGL 129 (286)
T ss_pred hhhhcHHHHHHHHHHhC--------------CCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhh
Confidence 56799999999999984 2678999999995 6654 33566788889876667777777765
No 156
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=96.55 E-value=0.0027 Score=70.71 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcE
Q 005021 184 GHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL 263 (719)
Q Consensus 184 g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nl 263 (719)
.||... --....--|+.|-.++.++|.|.|.. +++|+.++|||++|+=. .| +..+-+|+|+..
T Consensus 401 ~fP~g~-~~~~q~~wgsIG~svga~lG~a~a~~--------------e~rvilfiGDGs~qlTv-Qe-iStmir~gl~~~ 463 (561)
T KOG1184|consen 401 KFPKGC-GYESQMQWGSIGWSVGATLGYAQAAP--------------EKRVILFIGDGSFQLTV-QE-ISTMIRWGLKPI 463 (561)
T ss_pred cccccc-ceEEEEEEeeccccchhhhhhhhccC--------------CceEEEEecCccceeeH-HH-HHHHHhcCCCcE
Confidence 455531 22334567899999999999998863 68999999999998643 33 456678999999
Q ss_pred EEEEeCCCCCcccchh-----hhcchhHHHHHhccCc
Q 005021 264 IAFYDDNHISIDGDTE-----IAFTENVDKRFEGLGW 295 (719)
Q Consensus 264 i~ivddN~~sis~~~~-----~~~~~~~~~~~~a~G~ 295 (719)
||++|+++|.|..-.. ...+.+..+.+++||-
T Consensus 464 if~~NN~GYTIE~~IH~~~Yn~I~~Wd~~~l~~afg~ 500 (561)
T KOG1184|consen 464 IFLINNGGYTIEVEIHDGPYNDIQNWDYTALLEAFGA 500 (561)
T ss_pred EEEEeCCceEEEEeecCCCccccccchHHHHHHhhcC
Confidence 9999999999875442 1224566777777764
No 157
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.54 E-value=0.019 Score=55.23 Aligned_cols=115 Identities=20% Similarity=0.195 Sum_probs=81.8
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCcc-EEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIP-YCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~P-v~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
-|++.+ ..|+.++.+|.|.++.+. +| ++. +..+=+..+.+.|.+....+.|++++....+ .....-.+||...+
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~--~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~-~~~~~~~~~q~~d~ 110 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATG--KPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRP-TAGEGRGAFQEIDQ 110 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHC--CCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCc-cccccCCcccccCH
Confidence 355555 699999999999999863 44 443 4455566777888888788999999873322 22333334777777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSR 576 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r 576 (719)
..+++.+-.. .+...+.+++...+..|++. .++|++|.+|+
T Consensus 111 ~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 111 VALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 7888887654 56777888888888877743 25799998764
No 158
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.53 E-value=0.0055 Score=65.45 Aligned_cols=66 Identities=24% Similarity=0.170 Sum_probs=53.9
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 194 i~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
+....+..|.+++.|.|++.|.+.++ .+..|||+.|||.+ ..| +.++..|...+. |+++||-||+.
T Consensus 64 ~~~~~~~fg~~~a~a~Gi~~a~~~~~----------~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~-ni~~ivlDNe~ 130 (299)
T PRK11865 64 VPWIHVAFENAAAVASGIERAVKALG----------KKVNVVAIGGDGGTADIG--FQSLSGAMERGH-NILYLMYDNEA 130 (299)
T ss_pred cccchhhhcchHHHHHHHHHHHHHhc----------CCCeEEEEeCCchHhhcc--HHHHHHHHHcCC-CeEEEEECCcc
Confidence 34567778999999999999988764 25689999999977 444 389999999985 79999999986
No 159
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.48 E-value=0.03 Score=54.20 Aligned_cols=114 Identities=16% Similarity=0.051 Sum_probs=79.1
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCC--CCCCCChh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGED--GPTHQPIE 533 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~d--G~THq~~e 533 (719)
.-|++.+- .|+.++.+|.|.++.|. +.++.+..+-+..+.+.+........|++++...... .+.+ ...||.+.
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~--~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~-~~~~~~~~~~~~~~ 116 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGA--RAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPG-PSTGLPKPDQSDLM 116 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCC--cEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCC-CCCCCCCcCcHHHH
Confidence 35777776 99999999999999985 5444567777778888887776668999998743332 2221 22244344
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEc
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALS 575 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~ 575 (719)
...+++. -.-++.+.+++|+..+++.|++. .++|++|++.
T Consensus 117 ~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 117 AARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4445543 56778899999988888776632 2489999863
No 160
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.27 E-value=0.0039 Score=66.12 Aligned_cols=58 Identities=10% Similarity=0.022 Sum_probs=42.3
Q ss_pred cchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCC
Q 005021 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 273 (719)
Q Consensus 201 lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~s 273 (719)
.|.+++.|+|+.+|. .+..|||++|||++. .+-...+..|.+++++=+++|+||+.|+
T Consensus 62 mG~alp~AiGaklA~--------------pd~~VVai~GDG~~~-~iG~~eL~tA~r~nl~i~~IV~NN~~Yg 119 (280)
T PRK11869 62 HGRAIPAATAVKATN--------------PELTVIAEGGDGDMY-AEGGNHLIHAIRRNPDITVLVHNNQVYG 119 (280)
T ss_pred cccHHHHHHHHHHHC--------------CCCcEEEEECchHHh-hCcHHHHHHHHHhCcCcEEEEEECHHHh
Confidence 789999999998873 256899999999954 2224567889999986444455555444
No 161
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.23 E-value=0.062 Score=67.00 Aligned_cols=204 Identities=12% Similarity=0.001 Sum_probs=122.7
Q ss_pred CccccccccchHHHHHHHHHhcCC-------CCccEEEehhhhHHhHHHHHHHHhhh----cCCEEEEEecCCCccCCCC
Q 005021 458 RNVRFGVREHGMGAICNGIALHSP-------GLIPYCATFFVFTDYMRAAIRISALC----EAGVIYVMTHDSIGLGEDG 526 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~-------~~~Pv~~~y~~F~~ra~dqir~~a~~----~~pV~~v~~~~g~g~g~dG 526 (719)
-+|+.|+.|.-+..++.|-+..|. |.+-++++=..=++++-|.++..++. +-.|+++...|-...+.
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SS-- 152 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSS-- 152 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccC--
Confidence 688999999999999999995541 02335555555678999998866553 34566665444221110
Q ss_pred CCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc------CCCCC--------CCCCCCccc
Q 005021 527 PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALS------RQKLP--------HLAGTSIDG 589 (719)
Q Consensus 527 ~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~------r~~~~--------~~~~~~~~~ 589 (719)
.+-|..+..+.+.. |-|+.|+|.+|+..+.+.+++ ..+-||.+|.. ++.+. ..+. . ..
T Consensus 153 q~eqdSr~~~~~a~---iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~-~-f~ 227 (1159)
T PRK13030 153 SMPHQSDFALIAWH---MPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPE-D-FT 227 (1159)
T ss_pred cCHHHHHHHHHHcC---CceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc-c-cC
Confidence 11122333344444 559999999999999987763 35679999852 11110 0010 0 00
Q ss_pred cccc----cEEE--------------------ec-CC-----C-CCCCCEEEEEeCHhHHHHHHHHHHHHhCCC-----c
Q 005021 590 VEKG----AYII--------------------SD-NS-----S-GNKPDVILIGTGSELEIAAKAAEELRKGGK-----A 633 (719)
Q Consensus 590 ~~~G----~~~i--------------------~~-~~-----~-~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi-----~ 633 (719)
.+.| .|.. .+ .. . +++.++-||++|.....+.+|.+.|...+. .
T Consensus 228 ~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lg 307 (1159)
T PRK13030 228 PPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAG 307 (1159)
T ss_pred CCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccC
Confidence 0000 0000 00 00 0 013679999999999999999888754332 3
Q ss_pred EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc
Q 005021 634 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 634 v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
++|+-+-..-||+.+.+. ..+. +...|+||||...
T Consensus 308 irilKvgm~~PL~~~~i~---~F~~-g~d~VlVVEE~~p 342 (1159)
T PRK13030 308 IRIYKVGLSWPLEPTRLR---EFAD-GLEEILVIEEKRP 342 (1159)
T ss_pred ccEEEeCCccCCCHHHHH---HHHh-cCCEEEEEeCCch
Confidence 566666676699988653 2222 2344799999865
No 162
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.02 E-value=0.042 Score=53.99 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=77.7
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE-e-hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA-T-FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~-y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
-|++.+ -.|++++.+|.|.++.+. +|.++ + ...=+.-+...|.+....+.||+++....+...-..|..|+....
T Consensus 40 i~~i~~-~~E~~A~~~A~g~ar~~g--~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~ 116 (172)
T PF02776_consen 40 IRFIPV-RHEQGAAFMADGYARATG--RPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQ 116 (172)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHHS--SEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHH
T ss_pred eeeecc-cCcchhHHHHHHHHHhhc--cceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhh
Confidence 466664 899999999999997653 66554 3 323233455566666667999999885554443335777877888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
..+++.+-.. .+.+.+++++...++.|+ ....+|++|-+|+.
T Consensus 117 ~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 117 QSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp HHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred cchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 8899977643 455556666555555444 34689999999874
No 163
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.95 E-value=0.043 Score=53.31 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=65.2
Q ss_pred ccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHh-hhcCCEEEEEecCCCccCCCCCCC--CChhhhhHH-
Q 005021 463 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISA-LCEAGVIYVMTHDSIGLGEDGPTH--QPIEHLASF- 538 (719)
Q Consensus 463 GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a-~~~~pV~~v~~~~g~g~g~dG~TH--q~~edia~l- 538 (719)
.-+|...+++|+|.++.|+ +|.+++-.+-+..+...+.... ..+.||+++.+.-|- .|++-+.| ++......|
T Consensus 40 ~~~ee~aa~~aAg~~~~~~--~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~-~~~~~~~q~~~g~~~~~~l~ 116 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGK--KPAILMQSSGLGNSINALASLNKTYGIPLPILASWRGV-YKEKIPAQIPMGRATPKLLD 116 (157)
T ss_pred cCChHHHHHHHHHHHHhcC--CcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCC-CCCCCccccchhhhhHHHHH
Confidence 5789999999999999885 7877654444556666666666 679999999854333 23331112 222222222
Q ss_pred -cCCCCeEEEeeCCHHHH---HHHHHHHHHcCCCcEEEEEcCC
Q 005021 539 -RAMPNILMLRPADGNET---AGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 539 -r~iPnl~V~~P~d~~e~---~~~l~~a~~~~~~P~~irl~r~ 577 (719)
..+|. ....+++|+ ..+++.|.. .++|++|.+++.
T Consensus 117 ~~~i~~---~~i~~~e~~~~i~~A~~~a~~-~~gPv~il~~~~ 155 (157)
T TIGR03845 117 TLGIPY---TIPREPEEAKLIEKAISDAYE-NSRPVAALLDPK 155 (157)
T ss_pred HcCCCe---EEeCCHHHHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 23453 444455555 334444444 359999998764
No 164
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=95.55 E-value=0.14 Score=63.71 Aligned_cols=199 Identities=12% Similarity=0.035 Sum_probs=124.0
Q ss_pred CccccccccchHHHHH---------HHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhh----cCCEEEEEecCCCccCC
Q 005021 458 RNVRFGVREHGMGAIC---------NGIALHSPGLIPYCATFFVFTDYMRAAIRISALC----EAGVIYVMTHDSIGLGE 524 (719)
Q Consensus 458 R~~d~GIaE~~~vg~A---------aGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~----~~pV~~v~~~~g~g~g~ 524 (719)
=+|..|+.|.-++.++ .|-+..| .+-++++=..=++++-|.++..++. +-.|+++...|-...+.
T Consensus 83 i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~G--v~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SS 160 (1165)
T PRK09193 83 IVFQPGLNEDLAATAVWGSQQVNLFPGAKYDG--VFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSS 160 (1165)
T ss_pred eEEeeccCHHHHHHHHhhhcccccccceeecc--ceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccc
Confidence 7888999999999999 5557778 4777777667788999998865443 34566665444321111
Q ss_pred CCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCCC--------CCCCCCc
Q 005021 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKLP--------HLAGTSI 587 (719)
Q Consensus 525 dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r------~~~~--------~~~~~~~ 587 (719)
.+-|..+-.+.+.. |-|+.|+|.+|+..+.+.+++ ..+-||.+|... +.+. ..+. .
T Consensus 161 --q~eqdSr~~~~~a~---iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~--~ 233 (1165)
T PRK09193 161 --TLPHQSEHAFKAAG---MPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE--D 233 (1165)
T ss_pred --cchhhhHHHHHHcC---CceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc--c
Confidence 11122333344544 459999999999999987763 356799998521 1110 0110 0
Q ss_pred cccccc----cEE--------------------------Eec-CCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc---
Q 005021 588 DGVEKG----AYI--------------------------ISD-NSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA--- 633 (719)
Q Consensus 588 ~~~~~G----~~~--------------------------i~~-~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~--- 633 (719)
...+.+ .|. +-+ .-..++.++-||++|.....+.+|.+.| |++
T Consensus 234 f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~ 310 (1165)
T PRK09193 234 FEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEET 310 (1165)
T ss_pred ccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhh
Confidence 011111 010 000 0000136799999999988888876655 444
Q ss_pred -----EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc
Q 005021 634 -----VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 634 -----v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
++|+-+-...||+.+.+. ... .+...|+||||...
T Consensus 311 ~~~~gi~ilKvgm~~PL~~~~i~---~Fa-~g~~~vlVVEE~~p 350 (1165)
T PRK09193 311 AARLGIRLYKVGMVWPLEPQGVR---AFA-EGLDEILVVEEKRQ 350 (1165)
T ss_pred hcccCCCEEEeCCCCCCCHHHHH---HHH-hcCCEEEEEecCch
Confidence 889998888999988764 222 22344799999754
No 165
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=95.40 E-value=0.021 Score=74.61 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=62.0
Q ss_pred cCCCcch--hHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhh--cCCCcEEEEEeCCCC
Q 005021 197 TTGPLGQ--GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGH--LGLGKLIAFYDDNHI 272 (719)
Q Consensus 197 ~tG~lG~--gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~--~~L~nli~ivddN~~ 272 (719)
.-|.+|. +++.|+|.++|. ++.|+|++|||+++- ....|..|.. ++++=++||+||+++
T Consensus 757 ~~G~mG~~G~lpaAIGaala~---------------~r~Vv~i~GDGsF~m--~~~EL~Ta~r~~~~lpi~iVV~NN~gg 819 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC---------------NKRVLCVVGDISFLH--DTNGLSILSQRIARKPMTILVINNHGG 819 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC---------------CCCEEEEEehHHHHh--hhhHHHHhhcccCCCCEEEEEEeCCCc
Confidence 3478888 599999999873 246999999999964 4466777766 488756777777776
Q ss_pred Ccccch-----------hh-h---cchhHHHHHhccCceEEEE
Q 005021 273 SIDGDT-----------EI-A---FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 273 sis~~~-----------~~-~---~~~~~~~~~~a~G~~~~~v 300 (719)
.|-... +. . ...+..+..++||++..+|
T Consensus 820 gi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV 862 (1655)
T PLN02980 820 AIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHV 862 (1655)
T ss_pred HhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeec
Confidence 653210 01 1 1346888889999999888
No 166
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=95.29 E-value=0.11 Score=57.33 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=78.4
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHH---hhhcCCEEEEEecCCCccC-CCCCCC--
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRIS---ALCEAGVIYVMTHDSIGLG-EDGPTH-- 529 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~---a~~~~pV~~v~~~~g~g~g-~dG~TH-- 529 (719)
.|++-+ -.|..+||+|+|+.+. |+ +|++++-.+=+..+.+.+... -.-++|+++++++-|- .| .|=|.|
T Consensus 27 ~~~i~~-~~E~~av~iaaG~~latG~--~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~-~g~~depqh~~ 102 (361)
T TIGR03297 27 LRHVIA-ANEGAAVGLAAGAYLATGK--RAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGE-PGVHDEPQHVK 102 (361)
T ss_pred ceEEec-CCchHHHHHHHHHHHhcCC--ccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCC-CCCCCCchhhH
Confidence 355554 6799999999999999 96 999998655566666665432 3358999999866444 45 566888
Q ss_pred CChhhhhHHc--CCCCeEEEeeCCHHHHHHHHH----HHHHcCCCcEEEEEcCCCC
Q 005021 530 QPIEHLASFR--AMPNILMLRPADGNETAGAYK----VAVANRKRPSILALSRQKL 579 (719)
Q Consensus 530 q~~edia~lr--~iPnl~V~~P~d~~e~~~~l~----~a~~~~~~P~~irl~r~~~ 579 (719)
|+.--..+|. .||-.. .|.+.+|....+. .+.+ .+.|+.|.+.++.+
T Consensus 103 ~G~~t~~lL~~~~i~~~~--~~~~~~~~~~~~~~a~~~~~~-~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 103 QGRITLSLLDALEIPWEV--LSTDNDEALAQIERALAHALA-TSRPYALVVRKGTF 155 (361)
T ss_pred HhHHHHHHHHHcCCCEEE--CCCChHHHHHHHHHHHHHHHH-HCCCEEEEEccccc
Confidence 5654455665 444333 2455555555444 4443 58999999988655
No 167
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.66 E-value=0.22 Score=48.65 Aligned_cols=114 Identities=17% Similarity=0.070 Sum_probs=74.0
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ -.|++++.+|-|.|+... +|-+ .+...-+..+...|.+.-..+.||+++...... ...+-.+||.+.+.
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg--~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~-~~~~~~~~q~~d~~ 112 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASG--RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPP-ELRGTGANQTIDQV 112 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhC--CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCH-HhcCCCCCcccchh
Confidence 55554 789999999999998653 5655 356666666666777777889999999732222 22223357888888
Q ss_pred hHHcCCCCe--EEEeeCC-------HHHHHHHHHHHHHcCCCcEEEEEc
Q 005021 536 ASFRAMPNI--LMLRPAD-------GNETAGAYKVAVANRKRPSILALS 575 (719)
Q Consensus 536 a~lr~iPnl--~V~~P~d-------~~e~~~~l~~a~~~~~~P~~irl~ 575 (719)
.+++.+=.. +|-.|.+ +..+..+++.|.....||++|-+|
T Consensus 113 ~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 113 GLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred hhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 888765542 3334444 344555555555435689999664
No 168
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=94.63 E-value=0.36 Score=60.32 Aligned_cols=197 Identities=15% Similarity=0.062 Sum_probs=118.9
Q ss_pred CccccccccchHHH---------HHHHHHhcCCCCccEEEehhhhHHhHHHHHHHH--hhh--cCCEEEEEecCCCccCC
Q 005021 458 RNVRFGVREHGMGA---------ICNGIALHSPGLIPYCATFFVFTDYMRAAIRIS--ALC--EAGVIYVMTHDSIGLGE 524 (719)
Q Consensus 458 R~~d~GIaE~~~vg---------~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~--a~~--~~pV~~v~~~~g~g~g~ 524 (719)
=+|..|+.|.-+++ ++.|-+..| .+-++++=..=++++-|.++.. ++. +-.|+++...|-....
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dG--v~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~S- 162 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDG--VFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKS- 162 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeecc--ceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCcc-
Confidence 57788999999944 445555566 4666666666678999998754 454 3446666544422111
Q ss_pred CCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCCC--------CCCCCCc
Q 005021 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKLP--------HLAGTSI 587 (719)
Q Consensus 525 dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r------~~~~--------~~~~~~~ 587 (719)
-.+-|..+....+..| -|+.|+|.+|+..+...+++ ..+-||.+|... +.+. ..+. .
T Consensus 163 -Sq~eqdSr~~~~~a~i---Pvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~--~ 236 (1186)
T PRK13029 163 -SSVAHQSDHTFIAWGI---PVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD--D 236 (1186)
T ss_pred -ccCHHHHHHHHHHcCC---ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc--c
Confidence 1111223333444454 59999999999999887763 346799998632 1110 0010 0
Q ss_pred ccccccc----E-----------------------------EEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc-
Q 005021 588 DGVEKGA----Y-----------------------------IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA- 633 (719)
Q Consensus 588 ~~~~~G~----~-----------------------------~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~- 633 (719)
...+.|+ | ++... ++..++-||++|.....+.+|.+.| |++
T Consensus 237 f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~--~~~~~~GIItsG~~y~~v~eAl~~l---gl~~ 311 (1186)
T PRK13029 237 FVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVID--GPNPRLGIIAAGKAYLDVRQALRDL---GLDD 311 (1186)
T ss_pred ccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEecc--CCCCCEEEEecCccHHHHHHHHHHc---CCCh
Confidence 0001100 0 01100 0136799999999988888886655 443
Q ss_pred -------EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc
Q 005021 634 -------VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 634 -------v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
++|+-+-...||+.+.+. ... .+...|+||||...
T Consensus 312 ~~~~~~gi~ilKvgm~~PL~~~~i~---~Fa-~g~d~vlVVEE~~p 353 (1186)
T PRK13029 312 ATCAALGIRLLKVGCVWPLDPQSVR---EFA-QGLEEVLVVEEKRA 353 (1186)
T ss_pred hhccccCCCEEEeCCCCCCCHHHHH---HHH-hcCCEEEEEecCch
Confidence 889999999999988764 222 23345799999754
No 169
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=93.87 E-value=2.6 Score=43.74 Aligned_cols=118 Identities=12% Similarity=-0.001 Sum_probs=66.1
Q ss_pred CCCCccccccccchHHHHHHHHHh----c-----CCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCCCccC
Q 005021 455 PEERNVRFGVREHGMGAICNGIAL----H-----SPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSIGLG 523 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~----~-----G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g 523 (719)
+|.++++..+.-...+|.+...|. . . +=+|++++- ..|++..+-.+-.....++||++++-+++. +|
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~-p~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~-yg 128 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELD-KKKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEV-YS 128 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccC-CCCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCcc-cc
Confidence 455666665444455554333332 2 1 126777664 444444444444445588998888865543 22
Q ss_pred CCCCCCC---------------------ChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 524 EDGPTHQ---------------------PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 524 ~dG~THq---------------------~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
.-+..++ ....++---.++.+....+.+..|++.+|+.++.+.++|++|-.
T Consensus 129 ~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 129 NTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2221111 11222222344555555699999999999999952589998865
No 170
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=93.69 E-value=0.37 Score=56.16 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=77.8
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ ..|++++.+|-|.|+.-. +|-+ .++.+-+.-+...|.++...+.||+++....... .+. ..||.+.+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 112 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITG--KPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLK--LTHQSMDN 112 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhC--CceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCccccccc--Ccccccch
Confidence 66666 699999999999997542 4433 4566666666667777777899999987322221 232 34898888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
.++++.+-.. .....++.++...+..|+ ....||+||-+|+.
T Consensus 113 ~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 113 VALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred hhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 9999987553 334456667666555554 32468999999875
No 171
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=93.61 E-value=0.37 Score=56.04 Aligned_cols=117 Identities=9% Similarity=-0.015 Sum_probs=75.1
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE-e-hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA-T-FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~-y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ -.|++++.+|-|.|+... +|-++ + -..-+..+...|..+...+.||+++........-..++.+|.+..
T Consensus 49 i~~i~~-~hE~~A~~~Adgyar~tg--~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~ 125 (530)
T PRK07092 49 FRYVLG-LQEAVVVGMADGYAQATG--NAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQA 125 (530)
T ss_pred CCEEEE-ccHHHHHHHHHHHHHHhC--CceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCcccccCccchhcccCH
Confidence 366644 899999999999999543 56554 3 233334566667667778999998863222222123333454566
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..+++.+-...... .++.++..+++.|++ ...||+||-+|+.
T Consensus 126 ~~l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 126 AELPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred HHhhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 78888876654433 566676666665553 2358999999864
No 172
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=93.51 E-value=0.12 Score=57.62 Aligned_cols=62 Identities=24% Similarity=0.224 Sum_probs=42.6
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 195 ~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
..+-|.+|-|++.|++.|++. .+..|||+-||+++- .+.=-+..+.+++|+=+++|+|||++
T Consensus 426 aGtfgTMGVG~Gfalaaa~~~--------------P~~~V~~veGDsaFG--fSaME~ET~vR~~Lpvv~vV~NN~Gi 487 (571)
T KOG1185|consen 426 AGTFGTMGVGLGFALAAALAA--------------PDRKVVCVEGDSAFG--FSAMELETFVRYKLPVVIVVGNNNGI 487 (571)
T ss_pred CccccccccchhHHHHHHhhC--------------CCCeEEEEecCcccC--cchhhHHHHHHhcCCeEEEEecCCcc
Confidence 345667787877777666653 378899999999984 32222345678999866666667764
No 173
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=93.29 E-value=1 Score=44.01 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=76.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ -.|++++-+|.|.|+... +|-++ +...=+..+...+.+....+.||+++....... .+. ..+|.+.+
T Consensus 40 ~~v~~-rhE~~A~~mA~gyar~tg--~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~ 114 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTG--KLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDL 114 (164)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccccCC--CCCcccCH
Confidence 44444 789999999999998743 55443 455555556666666677899999997322211 122 24787888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~r~ 577 (719)
..+++.+=.. ...+.++.++..+++.|++. ..+|++|-+|+.
T Consensus 115 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 115 LALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 8888887653 35556777777666665532 469999988864
No 174
>PRK05858 hypothetical protein; Provisional
Probab=93.10 E-value=1 Score=52.53 Aligned_cols=116 Identities=10% Similarity=0.043 Sum_probs=78.4
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ .-|++++.+|-|.|+... +|-++ ++.+=+..+...|.++...+.||+++........ .+-.++|.+..
T Consensus 43 i~~i~~-rhE~~A~~~AdGyar~tg--~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~ 118 (542)
T PRK05858 43 IRLIDV-RHEQTAAFAAEAWAKLTR--VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALR-WGMGSLQEIDH 118 (542)
T ss_pred CCEEee-ccHHHHHHHHHHHHHhcC--CCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCccc-CCCCCCcccch
Confidence 466666 899999999999999843 56553 4444444556667777778999998863222221 12234777888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
.++++.+-- ......++.++...+..|++ ...|||+|-+|+.
T Consensus 119 ~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 119 VPFVAPVTK-FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhhhc-eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 888887765 34455667777766665553 2468999999874
No 175
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=92.67 E-value=3.5 Score=42.75 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=56.7
Q ss_pred ccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCCh-----------------------hhhh-H
Q 005021 484 IPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI-----------------------EHLA-S 537 (719)
Q Consensus 484 ~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~-----------------------edia-~ 537 (719)
+|++++ -..|.+..+..+...+..++||++++-+++. +|.-|..++.. -|+. +
T Consensus 81 r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~-yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~i 159 (235)
T cd03376 81 ITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEA-YMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLI 159 (235)
T ss_pred CeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcc-cccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHH
Confidence 788765 4556556666677778889999988865543 34211111110 1222 2
Q ss_pred Hc--CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 538 FR--AMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 538 lr--~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
.+ .++.+..+...+.+|+..+++.+++ .++|++|-+
T Consensus 160 A~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 160 MAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22 2334445678999999999999996 689998865
No 176
>PRK08322 acetolactate synthase; Reviewed
Probab=92.55 E-value=0.75 Score=53.68 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=77.2
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ ..|++++.+|-|.|+... +|-++ +..+=+..+...|.++-..+.||+++....... .+. + .||.+..
T Consensus 40 ~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~~-~-~~q~~d~ 114 (547)
T PRK08322 40 KLILT-RHEQGAAFMAATYGRLTG--KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQ-G-SFQIVDV 114 (547)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhhC--CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccCC-C-ccccccH
Confidence 55555 899999999999998743 55443 455555566666777777899999887322221 122 2 3777777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
.++++.+-. ..+...++.++..+++.|++. ..||++|-+|+.
T Consensus 115 ~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 115 VAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 788887654 345566777776666655532 468999999875
No 177
>PRK07586 hypothetical protein; Validated
Probab=92.12 E-value=0.87 Score=52.73 Aligned_cols=115 Identities=12% Similarity=0.006 Sum_probs=72.3
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ --|++++.+|.|.|+... +|-|+ ++..=+..+..-|.++-..+.||+++....... ...-..||.....
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~-~~~~~~~q~~d~~ 116 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAG--KPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATY-HRKYDAPLTSDIE 116 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHC--CCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchh-ccCCCcccccchh
Confidence 66666 889999999999998642 56543 455544555555666667899999987322111 1111236666666
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHH----HHcCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVA----VANRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a----~~~~~~P~~irl~r~ 577 (719)
.+++.+=- -.+...++.++..+++.| .....|||||-+|+.
T Consensus 117 ~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 117 ALARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred hhhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 77776532 234455566665555544 432479999999985
No 178
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.03 E-value=1.1 Score=52.91 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=74.8
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|-|.|+... +|-+ .++..=+..+...|.++...+.||+++....... .+.+ .+|.+.
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d 134 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATG--KVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQD--AFQECD 134 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC--Cccccc
Confidence 467766 899999999999998642 4433 3455555566666777777899999997332222 2322 367677
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHH----HHHHHHHcCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAG----AYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~----~l~~a~~~~~~P~~irl~r~ 577 (719)
..++++.+=-.. +...++.++.. +++.|+....||+||-+|+.
T Consensus 135 ~~~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 135 TVGITRPIVKHN-FLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HHHHhcCCccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 777887765432 33345555444 44444433469999999985
No 179
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=91.60 E-value=4.3 Score=43.42 Aligned_cols=147 Identities=12% Similarity=0.019 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccc---cchHHHHHHHHHhcCCCCccEEE
Q 005021 412 RNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVR---EHGMGAICNGIALHSPGLIPYCA 488 (719)
Q Consensus 412 r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIa---E~~~vg~AaGlA~~G~~~~Pv~~ 488 (719)
..++.++|.++.-..++. ++..|++-+. +.| +++++.-- =...+.+|.|+++... =+||++
T Consensus 13 ~~~~~~a~~~l~~~p~d~-iivsdiGc~~-------------~~~-~~l~~~~~~t~mG~alPaAiGaklA~P-d~~VVa 76 (287)
T TIGR02177 13 LSALQRALAELNLDPEQV-VVVSGIGCSA-------------KTP-HYVNVNGFHGLHGRALPVATGIKLANP-HLKVIV 76 (287)
T ss_pred HHHHHHHHHHhcCCCCCE-EEEECCCccc-------------ccC-CeEecCCcccccccHHHHHHHHHHHCC-CCcEEE
Confidence 456667777665333344 4445765332 123 44443221 0335557777766542 367776
Q ss_pred e--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCC----CCC----------C-------ChhhhhHHcCCCCeE
Q 005021 489 T--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG----PTH----------Q-------PIEHLASFRAMPNIL 545 (719)
Q Consensus 489 ~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG----~TH----------q-------~~edia~lr~iPnl~ 545 (719)
+ -..|......-+-.++..++||++++-.++. +|.-| ++- + ...-+++.....-.-
T Consensus 77 i~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~-yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va 155 (287)
T TIGR02177 77 VGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQV-YGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVA 155 (287)
T ss_pred EeCchHHHhccHHHHHHHHHhCcCeEEEEEECHH-HHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEE
Confidence 5 3445433333444456789998888755432 22211 110 0 111222333333222
Q ss_pred EEeeCCHHHHHHHHHHHHHcCCCcEEEEEcC
Q 005021 546 MLRPADGNETAGAYKVAVANRKRPSILALSR 576 (719)
Q Consensus 546 V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r 576 (719)
.....+.+|+..+++.|++ +++|++|-.-.
T Consensus 156 ~~~~~~~~eL~~ai~~Al~-~~GpslIeV~~ 185 (287)
T TIGR02177 156 RGFSGDVAHLKEIIKEAIN-HKGYALVDILQ 185 (287)
T ss_pred EEecCCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 3336899999999999996 79999887643
No 180
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=91.42 E-value=2.8 Score=40.98 Aligned_cols=117 Identities=14% Similarity=0.001 Sum_probs=67.0
Q ss_pred CCCCCcccccc--ccchHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCC-CccCCC---
Q 005021 454 TPEERNVRFGV--REHGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLGED--- 525 (719)
Q Consensus 454 ~~p~R~~d~GI--aE~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~g~d--- 525 (719)
..|.+++..|. +=...+++|.|.++... =+|++++. ..|... ...+...+..++|+++++..++ ++....
T Consensus 36 ~~p~~~~~~~~~g~mG~~lp~AiGa~la~~-~~~vv~i~GDG~f~~~-~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 36 RKPRHRLDAGTFGTLGVGLGYAIAAALARP-DKRVVLVEGDGAFGFS-GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred cCCCcEecCCCCCcccchHHHHHHHHHhCC-CCeEEEEEcchhhcCC-HHHHHHHHHcCCCEEEEEEECcccccchhhhh
Confidence 45788887653 22334556767776652 35666653 444432 2335556678999888776554 332110
Q ss_pred ----CCCCC----Chhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 526 ----GPTHQ----PIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 526 ----G~THq----~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+..+. ...|.. +.+++ |+..+.-.+.+|+..+++.+.. .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 114 LSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 00000 112222 22222 4556666789999999999986 589998854
No 181
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=91.11 E-value=6.3 Score=38.87 Aligned_cols=118 Identities=10% Similarity=-0.031 Sum_probs=65.8
Q ss_pred CCCCCcccccc--ccchHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecC-CCccCC----
Q 005021 454 TPEERNVRFGV--REHGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHD-SIGLGE---- 524 (719)
Q Consensus 454 ~~p~R~~d~GI--aE~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~-g~g~g~---- 524 (719)
..|.||+..+- +=...+..|.|.++.-. =+|++++. ..|..-. .-+......++|+++++.++ +++.-.
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~-~~~vv~i~GDG~f~m~~-~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYP-DRKVVAVSGDGGFMMNS-QELETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCC-CCcEEEEEcchHHHhHH-HHHHHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 45788886532 11223335666554321 26777653 4454222 22444566789988876444 443210
Q ss_pred --CCC-CCC--Chhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 005021 525 --DGP-THQ--PIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 575 (719)
Q Consensus 525 --dG~-THq--~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~ 575 (719)
.+. .+. ..-|.+ +-+++ |+.-+.-.+.+|++.+++.++. .++|++|-..
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 011 110 011322 33333 5667777899999999999996 6999998754
No 182
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=90.79 E-value=6.9 Score=42.10 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=70.5
Q ss_pred chHHHHHHHHHhc----CCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC-----------
Q 005021 467 HGMGAICNGIALH----SPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH----------- 529 (719)
Q Consensus 467 ~~~vg~AaGlA~~----G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH----------- 529 (719)
.+..++|.|++.. |.+-+.++.. -.+|.+-.++.+-.++..+.||++++-+........|..|
T Consensus 72 G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 72 AATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred hChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 4445566666554 1111455533 4556665566677778999999999855443211111111
Q ss_pred ---------CChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 530 ---------QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 530 ---------q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
-.+..++.-..+|-+....|.+..++...++.|++ .+||.+|..-..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~~sp 207 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHLLAP 207 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 12344555567778889999999999999999996 799999976443
No 183
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.79 E-value=1.3 Score=52.15 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=78.1
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ -.|++++.+|-|.|+... +|-| .++..=+..+...|.++-..+.||+++........-.. ..||.++.
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~-~~~q~~d~ 118 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATG--KTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGE-DAFQETDM 118 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCC-Ccccccch
Confidence 356655 899999999999997543 5544 34555555666677777778999999973322221112 24787888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..+++.+--.. +...++.++..+++.|++ ...||+||-+|+.
T Consensus 119 ~~l~~~itk~s-~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 119 VGISRPIVKHS-FMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhhhhccceeE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 88888776543 444566766666665553 2369999999985
No 184
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=90.76 E-value=5.2 Score=42.61 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=68.1
Q ss_pred chHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCC----CCC----------C
Q 005021 467 HGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG----PTH----------Q 530 (719)
Q Consensus 467 ~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG----~TH----------q 530 (719)
...+.+|.|+++... =++|+.+- .++.+.....+-.++..++|+++++-..+. +|.-| ++- .
T Consensus 62 G~alp~A~GaklA~P-d~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~-ygmtggQ~s~~t~~g~~t~~t~~ 139 (279)
T PRK11866 62 GRVLPIATGVKWANP-KLTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQV-YGLTTGQASPTTPRGVKTKTTPD 139 (279)
T ss_pred ccHHHHHHHHHHHCC-CCcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChh-hhhhcccccCCCCCCceeeccCC
Confidence 556677888777642 36777653 434455555566677889998888855433 33222 110 0
Q ss_pred -------ChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcC
Q 005021 531 -------PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR 576 (719)
Q Consensus 531 -------~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r 576 (719)
....++.-..++.+....+.+..|++.+++.|++ +++|++|-.-.
T Consensus 140 g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~-~~Gps~I~v~~ 191 (279)
T PRK11866 140 GNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK-HKGFSFIDVLS 191 (279)
T ss_pred CCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 1223333345555667777999999999999996 79999987633
No 185
>PRK07064 hypothetical protein; Provisional
Probab=90.50 E-value=2 Score=50.18 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=77.3
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCC-CCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~d-G~THq~~e 533 (719)
|++.+ ..|++++.+|.|+|+... +|-| .++.+=+..+...|.++-..+.||+++....... .+.+ +..||.+.
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg--~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 119 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSG--GLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPD 119 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcC--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccC
Confidence 55555 889999999999997642 4444 3555555566667777777899999987322221 2332 34577678
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
+..+++.+-.. .+...+++++..+++.|+ ....||+||-+|..
T Consensus 120 ~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 120 QLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred HHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 88888877653 344456666666655554 32479999999874
No 186
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=90.39 E-value=8.7 Score=37.77 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=67.8
Q ss_pred CCCCCcccccc-cc-chHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-CccC-----
Q 005021 454 TPEERNVRFGV-RE-HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLG----- 523 (719)
Q Consensus 454 ~~p~R~~d~GI-aE-~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~g----- 523 (719)
..|.+++..+. .= ...++.|.|.++... =++++++ -..|+.-..+ +...+..++|+++++-.++ ++..
T Consensus 39 ~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~-~~~vv~i~GDG~f~~~~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~ 116 (178)
T cd02014 39 NGKQRFILSGLLATMGNGLPGAIAAKLAYP-DRQVIALSGDGGFAMLMGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQE 116 (178)
T ss_pred CCCCcEEcCCCCchhhhHHHHHHHHHHhCC-CCcEEEEEcchHHHhhHHH-HHHHHHhCCCcEEEEEECCchhHHHHHHH
Confidence 45778777543 11 113345556555431 1566654 4566544322 4445677999888876665 3210
Q ss_pred -CCCC-CC--CChhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 524 -EDGP-TH--QPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 524 -~dG~-TH--q~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
..++ .+ +..-|+. +.++. |+..+...+..|++..++.+++ .++|++|-.
T Consensus 117 ~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~-~~~p~liev 170 (178)
T cd02014 117 VMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALA-ADGPVVIDV 170 (178)
T ss_pred HhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0011 01 1112333 44444 7778888899999999999986 689998865
No 187
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=90.31 E-value=4.2 Score=39.34 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=63.2
Q ss_pred CCCCCccccccccchHHH----HHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhh-cCCEEEEEecCCCccCCCC
Q 005021 454 TPEERNVRFGVREHGMGA----ICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALC-EAGVIYVMTHDSIGLGEDG 526 (719)
Q Consensus 454 ~~p~R~~d~GIaE~~~vg----~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~-~~pV~~v~~~~g~g~g~dG 526 (719)
..|.+|+. ...+| .|.|+++.-. +|++++. ..|+.-.- .+...+.. ++|+++++.+++. +|.-+
T Consensus 33 ~~~~~~~~-----~gsmG~~lp~AiGa~~a~~--~~Vv~i~GDG~f~m~~~-el~t~~~~~~~~i~~vV~nN~~-~g~~~ 103 (157)
T cd02001 33 DRDGHFYM-----LGSMGLAGSIGLGLALGLS--RKVIVVDGDGSLLMNPG-VLLTAGEFTPLNLILVVLDNRA-YGSTG 103 (157)
T ss_pred cCCCCEEe-----ecchhhHHHHHHHHHhcCC--CcEEEEECchHHHhccc-HHHHHHHhcCCCEEEEEEeCcc-ccccC
Confidence 45788875 44444 5677766543 6777653 45543221 13333434 5898777744432 22222
Q ss_pred --CCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 527 --PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 527 --~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
++++..-|.+-+..-=|+.-+...+.+|+..+++.++. .++|++|-.
T Consensus 104 ~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred CcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22322223332222224445566889999999999996 689998865
No 188
>PRK08266 hypothetical protein; Provisional
Probab=90.11 E-value=1.3 Score=51.78 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=76.9
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCC-CCCCCCh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPI 532 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~d-G~THq~~ 532 (719)
=|++.+ ..|++++.+|-|+|+... +|-+ .++.+=+..++..|.++-..+.||+++....... .+.+ +.+|+.+
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg--~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 120 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTG--RPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMP 120 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhC--CCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecc
Confidence 466666 899999999999998643 5544 3566655666677777778899999987322221 2332 2345556
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
....+++.+-.. .....++.++..+++.|+ ....||++|-+|..
T Consensus 121 d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 121 DQLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred cHhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 777888876553 334445566555555444 33579999999874
No 189
>PRK07524 hypothetical protein; Provisional
Probab=90.06 E-value=2 Score=49.97 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=78.5
Q ss_pred CccccccccchHHHHHHHHHhcCCCCcc-EEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCC-CCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIP-YCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~P-v~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~d-G~THq~~e 533 (719)
|++.+ -.|++++.+|-|.|+... +| +|. +...=+..+...|.++-..+.||+++....... .+.+ +..|+.+.
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d 117 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSG--KPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPD 117 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCCCCcccccccc
Confidence 55655 789999999999997653 55 443 455555566666777777899999887322221 2332 45566567
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
...+++.+=- ..+...++.++...++.|++ ...||++|-+|+.
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 118 QRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 7788887653 44566677777777766653 2469999999975
No 190
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=89.80 E-value=2.1 Score=42.96 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=58.5
Q ss_pred CCCEEEEEeCHhH-HHHHHHHHHHHhC--CCcEEEEecCChhhHHHHHH-------HhhhhhccCCCceEEEEccccccC
Q 005021 605 KPDVILIGTGSEL-EIAAKAAEELRKG--GKAVRVVSFVSWELFDEQSD-------AYKESVLPAAVSARVSIEAGSTFG 674 (719)
Q Consensus 605 g~dvtIva~G~~v-~~al~Aa~~L~~~--Gi~v~VId~~~l~pld~~~~-------~~~~sv~~~~~~~vvvvE~~~~~G 674 (719)
.+||+|.+.|... .++++|++.|++. +++++|||+..|--|-.... .-..+++...+.+ +.--|..-+
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPV--iFafHGYp~ 111 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPV--IFAFHGYPW 111 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-E--EEEESSEHH
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCE--EEEcCCCHH
Confidence 5899999999977 6899999999987 99999999998766533211 1113455555553 222221111
Q ss_pred -chhhh-----cCCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 005021 675 -WEKIV-----GSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716 (719)
Q Consensus 675 -~~~~~-----~~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~ 716 (719)
+.+.+ ..++..-|..+=|..=++=++.-..++|-=.++..+.
T Consensus 112 ~i~~L~~~R~n~~~~hV~GY~EeGttTTPFDM~vlN~~dRfhLa~dai 159 (203)
T PF09363_consen 112 LIHRLLFGRPNHDRFHVHGYREEGTTTTPFDMRVLNGMDRFHLAKDAI 159 (203)
T ss_dssp HHHHHTTTSTTGGGEEEEEE-S---SS-HHHHHHCTT-SHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCeEEEeeccCCCcCchHHHHHHhCCCHHHHHHHHH
Confidence 11111 1123344543334444456777777777766665543
No 191
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=89.61 E-value=2.4 Score=49.66 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=77.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ -.|++++.+|-|.|+.-. +|-+ .++..=+..+...|..+-..+.||+++...... .......+|.++..
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~-~~~~~~~~q~~d~~ 116 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASG--KVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPT-SLIGSDAFQEADIL 116 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCc-cccCCCCCcccChh
Confidence 66666 789999999999997542 4544 356555556666677777789999998732221 11122347777777
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
.+++.+=-.. ....++.++..+++.|++. ..||+||-+|+.
T Consensus 117 ~~~~~~tk~~-~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 117 GITMPITKHS-FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred hhhcCcccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 8888765533 3345677777777766642 368999999875
No 192
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.55 E-value=5.2 Score=43.04 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=73.7
Q ss_pred cccchHHHHHHHHHhc----CCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC--------
Q 005021 464 VREHGMGAICNGIALH----SPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH-------- 529 (719)
Q Consensus 464 IaE~~~vg~AaGlA~~----G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH-------- 529 (719)
..=.+.+++|.|++.. +. -++|+.+ -..|.+-.+..+-.++..+.++++++-+.+. ++.-|..-
T Consensus 69 ~~fg~~~a~a~Gi~~a~~~~~~-~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~-Y~nTGgQ~S~~Tp~Ga 146 (299)
T PRK11865 69 VAFENAAAVASGIERAVKALGK-KVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEA-YMNTGIQRSGSTPFGA 146 (299)
T ss_pred hhhcchHHHHHHHHHHHHHhcC-CCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCcc-ccCCCCCCCCCCCCCc
Confidence 3335677788888665 42 1245543 4677777777777778889999888854443 32222111
Q ss_pred ------------------CChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 005021 530 ------------------QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 575 (719)
Q Consensus 530 ------------------q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~ 575 (719)
-.+..|+.-..+|-+....|.+..|+...++.|++ .+||++|..-
T Consensus 147 ~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v~ 209 (299)
T PRK11865 147 STTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQVL 209 (299)
T ss_pred ccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 12344444467787888999999999999999996 7999999763
No 193
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=89.32 E-value=15 Score=36.12 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCC-----------CCChhhhh-
Q 005021 471 AICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT-----------HQPIEHLA- 536 (719)
Q Consensus 471 g~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~T-----------Hq~~edia- 536 (719)
+.|.|+++... =++++.+ -..|+.-.+.-+......++|+++++.+++. +|.-+.. .+...|++
T Consensus 58 ~~AiGa~la~p-~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~-~g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKASE-DKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRT-TAMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhCC-CCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcc-eeccCCCCCCCCcccccCCCCccCHHH
Confidence 35666665532 2566655 3555433234455566779998887765543 3322211 00111222
Q ss_pred HHc--CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 537 SFR--AMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 537 ~lr--~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+.+ .++...|..|.+-.++..+++.+++ .++|++|..
T Consensus 136 ~a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 136 LVRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 222 3344455555555555588899886 689998865
No 194
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=89.25 E-value=2.1 Score=50.04 Aligned_cols=114 Identities=17% Similarity=0.080 Sum_probs=78.2
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ ..|++++.+|-|.|+.-. +|-+ .++.+=+..+...|.++-..+.||+++....... .+. | .+|.+..
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg--~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~ 114 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATG--KVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGT-D-AFQEIDV 114 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC-C-CCcccch
Confidence 55555 889999999999998642 5544 3566656666677777778899999987332222 232 2 3777777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
.++++.+-...... .+++++..+++.|++. ..||++|-+|+.
T Consensus 115 ~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 115 LGLSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred hccccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 78888776544433 4677777777666532 359999999874
No 195
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=89.20 E-value=2.3 Score=49.78 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=77.3
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ ..|++++.+|.|.|+... +|-+ .++.+=+..+...|.++-..+.||+++....... .+. + .+|.+.
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d 121 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTG--RPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFRER-E-AFQEID 121 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcC--CCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCccccCCC-C-cccccC
Confidence 356665 789999999999998753 5544 3566666666667777777899999987322221 232 2 367777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
...+++.+=... +...++.++..+++.|++ ...||++|-+|+.
T Consensus 122 ~~~l~~~~tk~~-~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 122 YRRMFGPMAKWV-AEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred HHHhhhhhhcee-eecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 888888765443 333567776666665553 2468999999875
No 196
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=89.15 E-value=3.6 Score=39.99 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=70.0
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCC-----
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQ----- 530 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq----- 530 (719)
|++.+ -.|++++.+|.|.++..+ ..+|. +...=+..+...|.++...+.||+++....... .+.....|+
T Consensus 37 ~~i~~-rhE~~A~~mA~gyar~t~--~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 37 RWVGN-CNELNAGYAADGYARVKG--LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred eEEee-CCHHHHHHHHHHHHHhhC--CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccccccceeeccccc
Confidence 45544 789999999999999862 34443 344445556666767777899999997322211 232222232
Q ss_pred Chh-hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC
Q 005021 531 PIE-HLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR 576 (719)
Q Consensus 531 ~~e-dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~r 576 (719)
.++ +..+++.+=... ....+++++..+++.|++. .++|++|-+||
T Consensus 114 ~~~d~~~~~~~~tk~~-~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 114 DFDVFLKMFEEITCAA-ARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred chHHHHHHHHhheeEE-EEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 233 467787654433 3334666666666555422 35899998876
No 197
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=88.94 E-value=2.5 Score=49.45 Aligned_cols=116 Identities=11% Similarity=0.002 Sum_probs=75.0
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ --|++++.+|.|+|+... +|.++ +..+=+.-++..|.++-..+.||+++........ ..-.++|.++.
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tg--kpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~-~~~~~~q~~d~ 115 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITG--KPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDM-IGHDYFQEVNL 115 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhC--CCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCccc-cCCCcccccch
Confidence 345444 789999999999998653 66554 4555555666666666778999998863222111 11224677778
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r~ 577 (719)
..+++.+--. .+...++.++..+++.|++ ...||++|-+|..
T Consensus 116 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 116 TKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 8888876543 3444555665555555442 1469999999874
No 198
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=88.90 E-value=2.9 Score=49.64 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 532 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ 532 (719)
=+++.+ -.|++++.+|.|+|+. | +|-+ .++..=+..+...|.++-..+.||+++....... .+. ..+|.+
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg---~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~--~~~q~~ 143 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATG---RVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGT--DAFQEA 143 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC---CCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CcCccc
Confidence 366665 8999999999999986 5 4544 3455555556666777777899999987332222 222 236777
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
...++++.+-.. .+...++.++..+++.|++. ..||++|-+|+.
T Consensus 144 d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 144 DIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred chhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 777888876543 23455777777777666632 369999999975
No 199
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=88.88 E-value=5.3 Score=39.28 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=62.4
Q ss_pred CCCCcc-cccccc-chHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCCC-ccCCCCCCC
Q 005021 455 PEERNV-RFGVRE-HGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSI-GLGEDGPTH 529 (719)
Q Consensus 455 ~p~R~~-d~GIaE-~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g~-g~g~dG~TH 529 (719)
.|.|++ +.|..- ...++.|.|.++... +|++++. ..|+.-+ .-+......++|+++++-+++. +.-.....+
T Consensus 40 ~~~~~~~~~g~g~mG~~l~~aiGa~la~~--~~Vv~i~GDGsf~m~~-~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~ 116 (175)
T cd02009 40 KTVRVFANRGASGIDGTLSTALGIALATD--KPTVLLTGDLSFLHDL-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQA 116 (175)
T ss_pred CCceEEecCCccchhhHHHHHHHHHhcCC--CCEEEEEehHHHHHhH-HHHHhccccCCCeEEEEEECCCCchheeccCC
Confidence 467777 444321 123455666555432 6777654 4444322 2244445568998777755543 210000100
Q ss_pred -------------CChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 530 -------------QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 530 -------------q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+.+.-.++.+++ |+.-+.-.+.+|++.+|+.+++ .++|++|-.
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 117 SFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred cccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 011111233332 4556677899999999999996 689998854
No 200
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.88 E-value=2.4 Score=49.87 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=77.3
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ -.|++++.+|.|.|+. |+ ..+|. ++..=+..+...|.++-..+.||+++....... .+. | .+|.++.
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~--~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~ 118 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGE--VGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGY-D-AFQECDM 118 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCC--ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhccCC-C-CCceecH
Confidence 56654 7899999999999975 63 34443 466666666666666667899999987332222 232 2 3676777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
.++++.+=.. .+...+++++..+++.|++. ..||+||-+|+.
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 119 VGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred HHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 7888876542 34445777777777766642 469999999875
No 201
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=88.84 E-value=2.7 Score=49.39 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=77.0
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ .-|++++.+|.|+|+... +|-++ ++.+=+.-+...|.++-..+.||+++....... .+. + .+|.+..
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~ 119 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASG--VPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGK-M-AFQEADA 119 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhC--CCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCccccCC-C-Cccccch
Confidence 45555 789999999999998632 55443 577777777777777777899999987322222 232 2 3566777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..+++.+--...- ..+++++..+++.|++ ...||++|-+|+.
T Consensus 120 ~~i~~~~tk~~~~-v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 120 MGVFENVTKYVIG-IKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred hhhhhccceeEEE-eCCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 7888876654433 3566676666665553 2469999999874
No 202
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=88.77 E-value=1.7 Score=51.13 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=76.9
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ .-|++++.+|.|.|+... +|-++ +..+.+..+...|.++-..+.||+++........ .+-..+|.+..
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~-~~~~~~Q~~d~ 125 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSG--KVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQ-TDRNAFQELDH 125 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccc-CCCCCccccCh
Confidence 466666 699999999999998632 56554 4556666666777777778999998873222221 12234777888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
..+++.+--. .....+++++...++.|+ ....||++|-+|..
T Consensus 126 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 126 IALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 8888877653 234455555555555444 33468999999875
No 203
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=88.76 E-value=3.2 Score=48.99 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=75.7
Q ss_pred CccccccccchHHHHHHHHHhcC-CCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALHS-PGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G-~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++.+ --|++++.+|-|.|+.. . +|-|+ ++..=+..+...|.++-..+.||+++....... .+. ..+|.+.
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g--~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D 117 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAG--NIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHK--EDFQAVD 117 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCC--CeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccC
Confidence 55554 67999999999999853 2 45443 454544455556666667899999997333322 222 2377777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..++++.+=-. .+...++.++..+++.|++ ...||++|-+|+.
T Consensus 118 ~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 118 IAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred HHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 77888876543 3344577777777777664 3468999999985
No 204
>PRK08611 pyruvate oxidase; Provisional
Probab=88.48 E-value=2.8 Score=49.37 Aligned_cols=114 Identities=9% Similarity=-0.020 Sum_probs=75.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++. ...|++++.+|.|+|+... +|-++ ++.+=+..+...|.++-..+.||+++....... .+ .+ .+|.+..
T Consensus 45 ~~i~-~rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~-~~-~~q~~d~ 119 (576)
T PRK08611 45 KFIQ-VRHEEVAALAAAAYAKLTG--KIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLG-TD-FFQEVNL 119 (576)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhC--CceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccccC-CC-CccccCH
Confidence 6665 4789999999999997543 55443 455555566666766677899999987332222 22 22 3676777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r~ 577 (719)
..+++.+--. .+...+++++..++..|++ ...||++|-+|..
T Consensus 120 ~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 120 EKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred HHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 8889877543 2345566666665555432 2469999999875
No 205
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=88.40 E-value=2.5 Score=49.68 Aligned_cols=116 Identities=11% Similarity=0.070 Sum_probs=75.9
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 532 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ 532 (719)
+-+++.+ .-|+.++.+|.|+|+... +|-++ ++.+=+..+...|.++-..+.||+++....... .+. | .+|.+
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~-~-~~q~~ 127 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISG--KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGS-D-AFQEA 127 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCccccCC-C-Ccccc
Confidence 4578866 899999999999998642 55443 455545555566666667799999886222211 232 2 35667
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
++.++++.+-... +...+++++..+++.|++ ...||++|-+|+.
T Consensus 128 d~~~l~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 128 DIMGITMPVTKHN-YQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred chhhhhhcccceE-EecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 7888888765443 234456666666655543 2369999999874
No 206
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=88.16 E-value=2.6 Score=49.38 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=78.0
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ ..|++++.+|.|+|+... +|-+ .++.+=+..++..|.++...+.||+++....... .+. ..+|.+.
T Consensus 52 i~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 126 (564)
T PRK08155 52 IRHILA-RHEQGAGFIAQGMARTTG--KPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVD 126 (564)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHcC--CCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccc
Confidence 467774 899999999999999753 6644 3566655666777777777899999987322222 232 2467777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
..++++.+--...- -.++.++..+++.|++. ..||++|-+|+.
T Consensus 127 ~~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 127 TYGISIPITKHNYL-VRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhhhhccceEEEE-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 77788876554333 34677777766666532 369999999874
No 207
>PRK08617 acetolactate synthase; Reviewed
Probab=87.83 E-value=3 Score=48.79 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=77.0
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ ..|++++.+|.|.|+... +|-++ ++.+=+.-+...|.++...+.||+++....... .+. ..||.+.
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d 117 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTG--KPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMD 117 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcC--CCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccc
Confidence 456665 889999999999998743 55443 455555556666666667899999986322211 232 2488888
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
+..+++.+-- ..+.-.++.++..++..|++ ...||++|-+|+.
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 118 NVALFRPITK-YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhhhhhhhcc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 8888887754 33444566676666665553 2368999999874
No 208
>PRK11269 glyoxylate carboligase; Provisional
Probab=87.41 E-value=3.8 Score=48.37 Aligned_cols=115 Identities=10% Similarity=0.064 Sum_probs=77.8
Q ss_pred CCccccccccchHHHHHHHHHhcC-CCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHS-PGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 532 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G-~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ 532 (719)
=|++.+ .-|++++.+|-|+|+.. . +|-+ .++.+-+..+...+.++-..+.||+++....... .+. ..+|.+
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~ 117 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAG--NIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHK--EDFQAV 117 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCC--CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--Cccccc
Confidence 377777 79999999999999764 3 4443 3666666666666666677899999887322222 232 237777
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
...++++.+=-. .+...++.++..+++.|++ ...||++|-+|+.
T Consensus 118 d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 118 DIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred ChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 788888865443 2344667777776666653 2358999999975
No 209
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=87.40 E-value=1.9 Score=50.65 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=77.9
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccE-E-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPY-C-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv-~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ .-|++++-+|-|.|+... +|- | .++.+=+.-++..|..+-..+.||+++........ .+-..+|.+.+.
T Consensus 49 ~~v~~-~hE~~A~~aAdgyar~tg--~~~v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~IsG~~~~~~-~~~~~~q~~d~~ 124 (568)
T PRK07449 49 RLHTH-FDERSAGFLALGLAKASK--RPVAVIVTSGTAVANLYPAVIEAGLTGVPLIVLTADRPPEL-RDCGANQAIDQL 124 (568)
T ss_pred EEEee-cCcccHHHHHHHHHHhhC--CCEEEEECCccHHHhhhHHHHHHhhcCCcEEEEECCCCHHH-hcCCCCceecHh
Confidence 56655 789999999999997653 553 3 46776666677777777788999999973222211 122337888889
Q ss_pred hHHcCCCCeEEEeeCCHH-----HHHHHHHH---HHHcCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGN-----ETAGAYKV---AVANRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~-----e~~~~l~~---a~~~~~~P~~irl~r~ 577 (719)
++++.+-...+-.|.+.. .+..+++. +.....|||+|-+|..
T Consensus 125 ~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 125 GLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred hHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 999987755666665521 13345555 3333579999999975
No 210
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=87.36 E-value=2.6 Score=47.78 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=75.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ .-|++++-+|-|+|+... +|-+ .++..=...+...|..+-..+.||+++....... .+. | .+|.+.+
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~ 114 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASG--RPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRGC-G-ANQTIDQ 114 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccC--CCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhCC-C-CCcccch
Confidence 55554 889999999999999742 4544 3555555556666666667899999986322211 232 2 3677778
Q ss_pred hhHHcCCCCe--EEEeeCC-------HHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 005021 535 LASFRAMPNI--LMLRPAD-------GNETAGAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 535 ia~lr~iPnl--~V~~P~d-------~~e~~~~l~~a~~~~~~P~~irl~r~~ 578 (719)
..+++.+=-. +|-.|.+ +..+..+++.|+....||++|-+|..-
T Consensus 115 ~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 115 PGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 8888866543 3334554 244666676666545699999998753
No 211
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=87.10 E-value=4 Score=48.15 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=74.4
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ -.|++++.+|.|.|+. |+ ..+| .++..=+..+...|.++-..+.||+++....... .+. ..+|.+.
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d 118 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGR--MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQ--GGFQEAE 118 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCC--CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccCCC--CCCcccc
Confidence 366665 8899999999999976 53 3343 3455544555556666667799999997222221 232 2477778
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r~ 577 (719)
+..+++.+=.. .+...+++++...++.|++ ...||+||-+|+.
T Consensus 119 ~~~l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~D 164 (588)
T PRK07525 119 QMPMFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRD 164 (588)
T ss_pred hhhhhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 88888876442 3445566666665555442 2479999999975
No 212
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=86.88 E-value=1.4 Score=41.48 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=67.4
Q ss_pred ccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHH-hhhcCCEEEEEecCCCccCCCCCCCCC--hhhhhHHcCC
Q 005021 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAM 541 (719)
Q Consensus 465 aE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~-a~~~~pV~~v~~~~g~g~g~dG~THq~--~edia~lr~i 541 (719)
+|...+|+|+|..+.|+ +|-..+..+=+....+.+-.. ..-++|..++++|-|. ++++=+.+-+ -.-..+|+.
T Consensus 50 REEeg~GIcAGa~lAGk--k~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~-~~E~i~AQVpmGr~~~kiLe~- 125 (172)
T COG4032 50 REEEGVGICAGAYLAGK--KPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGV-LKEGIEAQVPMGRALPKILEG- 125 (172)
T ss_pred chhcceeeehhhhhcCC--CcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccch-hhcCCccccccchhhHHHHhh-
Confidence 57888999999999997 998887665555555554332 3468999999877654 4543333321 111122221
Q ss_pred CCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc
Q 005021 542 PNILMLRPADGNETAGAYKVAVA---NRKRPSILALS 575 (719)
Q Consensus 542 Pnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~ 575 (719)
=++-.+.|-.++|+..++..+.. ....|+.+.++
T Consensus 126 ~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 126 LELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS 162 (172)
T ss_pred cCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 24456778888887666655432 24788888764
No 213
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=86.82 E-value=5 Score=47.25 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=74.6
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|.|.|+. |+ ..+| .++..=+..+...|.++-..+.||+++....+.. .+. ..||.+.
T Consensus 40 i~~i~~-rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~~~~~~~~~--~~~Q~~d 114 (579)
T TIGR03457 40 IRFIPV-VHEQGAGHMADGFARVTGR--MSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGL--GGFQEAD 114 (579)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCC--CEEEEECCCchHHHHHHHHHHHhhcCCCEEEEeCCCccccCCC--CCCcccc
Confidence 356665 7899999999999975 53 3333 3455555556666666677899999997222221 222 3478777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHH----HHcCCCcEEEEEcCCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVA----VANRKRPSILALSRQK 578 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a----~~~~~~P~~irl~r~~ 578 (719)
...+++.+=.. .+...++.++...++.| .. ..||+||-+|+.-
T Consensus 115 ~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~Dv 161 (579)
T TIGR03457 115 QLPMFQEFTKY-QGHVRHPSRMAEVLNRCFERAWR-EMGPAQLNIPRDY 161 (579)
T ss_pred hhhhhhcceeE-EEecCCHHHHHHHHHHHHHHHhc-CCCCEEEEeCcch
Confidence 77888876542 23345666666655544 43 3589999999853
No 214
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.49 E-value=4.5 Score=47.84 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=76.3
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|-|.|+. |+ ..+|. ++..=+..+...|.++-..+.||+++....... .+. .++|.+.
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~--~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 124 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGK--PGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECD 124 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCC--CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccc
Confidence 467776 8999999999999965 63 33433 455555555666666667899999887322211 232 3477777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQK 578 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~~ 578 (719)
..++++.+=-. .+...+++++..+++.|++. ..||+||-+|+.-
T Consensus 125 ~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 125 TVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred hhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 77777765332 23455677777777666642 3699999999753
No 215
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=86.13 E-value=4.6 Score=47.42 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=75.4
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|.|.|+. |+ ..+| .++..=+..+...|.++-..+.||+++....... .+.+ .+|.++
T Consensus 49 i~~i~~-rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d 123 (566)
T PRK07282 49 IRHILA-RHEQGALHEAEGYAKSTGK--LGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKD--AFQEAD 123 (566)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHHhCC--CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccCCCC--CccccC
Confidence 377776 8999999999999976 53 3333 3455545555566666666799999997332221 2322 466677
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
..++++.+=.... ...++.++..+++.|++. ..||+||-+|+.
T Consensus 124 ~~~~~~~itk~s~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 124 IVGITMPITKYNY-QIRETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred hhchhcCCCceeE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 7778877655433 344666666666666543 369999999875
No 216
>PLN02470 acetolactate synthase
Probab=86.04 E-value=4.7 Score=47.56 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=76.9
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|.|+|+... +|-+ .++..=+.-+..-|.++-..+.||+++....... .+. + .+|.+.
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~-~-~~q~~d 126 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASG--KVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGT-D-AFQETP 126 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcCC-C-cCcccc
Confidence 467776 889999999999997642 4444 3555655566666666667899999997322221 132 2 367677
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
+..+++.+=... +...+++++..+++.|++. ..|||+|-+|..
T Consensus 127 ~~~l~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 127 IVEVTRSITKHN-YLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhhhhheEEE-EEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 777777654322 3345778888877777642 369999999975
No 217
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=85.97 E-value=16 Score=39.20 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccc-c--ccchHHHHHHHHHhcCCCCccE
Q 005021 410 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFG-V--REHGMGAICNGIALHSPGLIPY 486 (719)
Q Consensus 410 s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~G-I--aE~~~vg~AaGlA~~G~~~~Pv 486 (719)
..-.++.++|.++.....+.+ +..|++-+.. +| ++++++ + .=...+.+|.|+++... =+++
T Consensus 27 ~il~~l~~al~~l~~~p~d~v-vvsdiGc~~~-------------~~-~~~~~~~~~g~mG~alpaAiGaklA~P-d~~V 90 (286)
T PRK11867 27 SILAALQRALAELGLDPENVA-VVSGIGCSGR-------------LP-GYINTYGFHTIHGRALAIATGLKLANP-DLTV 90 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEE-EEeCCccccc-------------cC-ccccccchhhhhhcHHHHHHHHHHhCC-CCcE
Confidence 344556666666654333444 3466653321 11 233331 1 11344556777666532 2666
Q ss_pred EEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCC-Ccc--CCCCC----------CCCC-----hhhhhHHcCCCC--e
Q 005021 487 CATF--FVFTDYMRAAIRISALCEAGVIYVMTHDS-IGL--GEDGP----------THQP-----IEHLASFRAMPN--I 544 (719)
Q Consensus 487 ~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~--g~dG~----------THq~-----~edia~lr~iPn--l 544 (719)
+.+- .++++....-+...+..++|+++++-+++ +|. +...+ +.++ ..-.++..+... +
T Consensus 91 V~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~v 170 (286)
T PRK11867 91 IVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFV 170 (286)
T ss_pred EEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEE
Confidence 6653 33333333444455678999888775543 221 11111 0011 111223333322 3
Q ss_pred EEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcC
Q 005021 545 LMLRPADGNETAGAYKVAVANRKRPSILALSR 576 (719)
Q Consensus 545 ~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r 576 (719)
......+..|+..+++.|++ +++|++|-.-.
T Consensus 171 a~~~~~~~~el~~al~~Al~-~~Gp~lIev~~ 201 (286)
T PRK11867 171 ARGFDSDVKQLTELIKAAIN-HKGFSFVEILQ 201 (286)
T ss_pred EEecCCCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 33357899999999999996 69999987643
No 218
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=85.95 E-value=3.3 Score=48.73 Aligned_cols=115 Identities=8% Similarity=-0.056 Sum_probs=74.6
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ --|++++.+|-|.|+... +|-++ ++..=+..+...|.++-..+.||+++...... ...+-.++|.+..
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tg--k~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~-~~~~~~~~q~id~ 114 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTG--KIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPT-TGMNMDTFQEMNE 114 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhC--CceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcc-ccCCCCCcceech
Confidence 356655 789999999999997542 55443 45555555666666666779999998732222 2223445777877
Q ss_pred hhHHcCCCCeEEEeeCCHHHH----HHHHHHHHHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNET----AGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~----~~~l~~a~~~~~~P~~irl~r~ 577 (719)
.++++.+=-. .....+++++ ..+++.|+. ..+|+||-+|+.
T Consensus 115 ~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D 159 (575)
T TIGR02720 115 NPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD 159 (575)
T ss_pred hhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence 7888865432 1233444444 455666665 679999999975
No 219
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=85.91 E-value=21 Score=36.02 Aligned_cols=115 Identities=15% Similarity=0.076 Sum_probs=64.3
Q ss_pred CCCCCccccccccchHHH----HHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-Ccc----
Q 005021 454 TPEERNVRFGVREHGMGA----ICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGL---- 522 (719)
Q Consensus 454 ~~p~R~~d~GIaE~~~vg----~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~---- 522 (719)
+.|.+|+..+- ...+| .|.|.++... =+|++++ -..|+.-. .-+-..+..++|+++++.+++ ++.
T Consensus 36 ~~~~~~~~~~~--~gsmG~~lpaAiGa~la~p-~~~vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 111 (205)
T cd02003 36 RTPGGYHLEYG--YSCMGYEIAAGLGAKLAKP-DREVYVLVGDGSYLMLH-SEIVTAVQEGLKIIIVLFDNHGFGCINNL 111 (205)
T ss_pred CCCCcEEcCCC--cchhhhHHHHHHHHHHhCC-CCeEEEEEccchhhccH-HHHHHHHHcCCCCEEEEEECCccHHHHHH
Confidence 45788886532 33344 5566554431 2566654 34555321 123344567999877775554 321
Q ss_pred ----CCC--CCC--------------CCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 523 ----GED--GPT--------------HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 523 ----g~d--G~T--------------Hq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+.. +.. .+...-..+.+++ |+..+.-.+++|++.+|+.+++ .++|++|-.
T Consensus 112 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 112 QESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSL-GARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHHhcCccccchhcccccccccccCCCCCCCHHHHHHhC-CCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 100 000 0111112233333 5666677899999999999996 689998854
No 220
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=85.89 E-value=5 Score=47.32 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=76.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ -.|++++.+|-|.|+... +|-|+ ++..=+.-+...|.++-..+.||+++....... ......+|.+.+.
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~-~~~~~~~q~~d~~ 115 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASG--KVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTK-LIGNDAFQEIDAL 115 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCcc-ccCCCCCccccHh
Confidence 55655 699999999999997632 55443 455555566667777778899999987322221 1122347777788
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
++++.+=.... .-.++.++..+++.|++. ..||+||-+|+.
T Consensus 116 ~l~~~~tk~s~-~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 116 GIFMPITKHNF-QIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred hHHhhhcceEE-ecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 88887655433 334566666666666542 368999999875
No 221
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=85.77 E-value=5.7 Score=46.69 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=72.8
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ --|++++-+|-|.|+... +|-+++ ...=...+...|.++-..+.||+++....... .+. ..||.+.+
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~ 117 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTG--ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHP 117 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhC--CcEEEEECCCCCHHHHHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccCh
Confidence 55544 689999999999999743 565543 33334455566666667899999886322221 232 24787888
Q ss_pred hhHHcCCCCeEEEeeCCHHH----HHHHHHHHHHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNE----TAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e----~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
..+++.+--.. ....++++ +..+++.|+. ..+|++|-+|+.
T Consensus 118 ~~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~-~~gPV~l~iP~D 162 (574)
T PRK09124 118 QELFRECSHYC-ELVSNPEQLPRVLAIAMRKAIL-NRGVAVVVLPGD 162 (574)
T ss_pred hhhcccceeee-EEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 88888654322 23445555 4445556664 469999999874
No 222
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=85.49 E-value=3.4 Score=48.32 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=74.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCcc-EEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCcc-CCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIP-YCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~P-v~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~-g~dG~THq~~ed 534 (719)
|++.+ --|++++.+|-|.|+... +| +|. +...=+.-+...|.++-..+.||+++........ +..-..||.+.+
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 118 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQ--KPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQ 118 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhC--CCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhH
Confidence 66665 889999999999997632 44 333 3455445556666666678999998863222211 112234777788
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHH----HHHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKV----AVANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~----a~~~~~~P~~irl~r~ 577 (719)
.++++.+=.. .+...++.++..+++. |+....|||||-+|+.
T Consensus 119 ~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 119 LAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 8888876543 3445566666555544 4433468999999874
No 223
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=85.42 E-value=12 Score=36.95 Aligned_cols=117 Identities=17% Similarity=0.069 Sum_probs=66.7
Q ss_pred CCCCCcccccc-c-cchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCC-cc------
Q 005021 454 TPEERNVRFGV-R-EHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GL------ 522 (719)
Q Consensus 454 ~~p~R~~d~GI-a-E~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~-g~------ 522 (719)
..|.+|+..+. . =...++.|.|.++... =+|++++ -..|+.-. .-+...+..++|+++++.+++. +.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~-~~~vv~i~GDG~f~~~~-~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARP-DKTVICIDGDGSFQMNI-QELATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCC-CCeEEEEEcccHHhccH-HHHHHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 35788886532 1 1234456666665531 2566654 35565332 2255566779998887766653 21
Q ss_pred ---CCC-CCCCC-Chhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 523 ---GED-GPTHQ-PIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 523 ---g~d-G~THq-~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+.. ..++. ..-|.+ +.+++ |+.-+.-.+..|+..+++.+.. .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 010 11111 112322 33333 5556666789999999999986 689999865
No 224
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=85.42 E-value=13 Score=37.24 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC--------------CCh
Q 005021 469 MGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--------------QPI 532 (719)
Q Consensus 469 ~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH--------------q~~ 532 (719)
.++.|.|.++... =+|++.+. ..|.+.....+......++||++++-+++. +|.-+..+ ++.
T Consensus 56 glpaAiGa~la~p-~r~Vv~i~GDGs~f~m~~~eL~ta~~~~lpv~iiVlnN~~-yg~~~~~~~~~~~~~~~~~~~~~~~ 133 (193)
T cd03375 56 ALAVATGVKLANP-DLTVIVVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQI-YGLTKGQASPTTPEGFKTKTTPYGN 133 (193)
T ss_pred HHHHHHHHHHhCC-CCeEEEEeccchHhhccHHHHHHHHHhCCCeEEEEEcCcc-cccCCCccCCCCCCCCcccCCCCCC
Confidence 3446666655432 36777654 334334344466667789999877755433 33222110 000
Q ss_pred ----hhh-hHHcC--CCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 005021 533 ----EHL-ASFRA--MPNILMLRPADGNETAGAYKVAVANRKRPSILALS 575 (719)
Q Consensus 533 ----edi-a~lr~--iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~ 575 (719)
-|. .+.++ .+........++.|+..+|+.+++ .++|++|-+.
T Consensus 134 ~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev~ 182 (193)
T cd03375 134 IEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEVL 182 (193)
T ss_pred CCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEEE
Confidence 111 22232 233322468999999999999996 6999998663
No 225
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=85.06 E-value=14 Score=35.27 Aligned_cols=116 Identities=19% Similarity=0.096 Sum_probs=67.9
Q ss_pred CCCCCcccc--ccccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCC-cc-C----
Q 005021 454 TPEERNVRF--GVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GL-G---- 523 (719)
Q Consensus 454 ~~p~R~~d~--GIaE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~-g~-g---- 523 (719)
..|.||+.. .-+=...++.|.|.++... =++++.+ -..|+.- ...+......++|+++++-+++. +. +
T Consensus 16 ~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p-~~~vv~i~GDG~f~~~-~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~ 93 (153)
T PF02775_consen 16 RRPRRFLTSGGFGSMGYALPAAIGAALARP-DRPVVAITGDGSFLMS-LQELATAVRYGLPVVIVVLNNGGYGMTGGQQT 93 (153)
T ss_dssp SSTTEEEESTTTT-TTTHHHHHHHHHHHST-TSEEEEEEEHHHHHHH-GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHH
T ss_pred CCCCeEEcCCCccccCCHHHhhhHHHhhcC-cceeEEecCCcceeec-cchhHHHhhccceEEEEEEeCCcceEeccccc
Confidence 347888772 3344566677777777632 2666654 4556544 33355566778898887755543 21 0
Q ss_pred CCCC-C--------CCChhhhhHHcCCCCeEEEe--eCCHHHHHHHHHHHHHcCCCcEEEE
Q 005021 524 EDGP-T--------HQPIEHLASFRAMPNILMLR--PADGNETAGAYKVAVANRKRPSILA 573 (719)
Q Consensus 524 ~dG~-T--------Hq~~edia~lr~iPnl~V~~--P~d~~e~~~~l~~a~~~~~~P~~ir 573 (719)
..+. + .+.+.-..+.+++ |+..++ +.|.+|++.+|+.+++ .++|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 94 PFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp HTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred cCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 0111 1 2222222334443 555555 4455999999999996 79999984
No 226
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.96 E-value=6.2 Score=46.30 Aligned_cols=114 Identities=12% Similarity=0.021 Sum_probs=77.8
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ -.|++++.+|.|+|+... +|-| .++..=+..+...|.++-..+.||+++....... .+. ..+|.+.+
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 117 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASG--KVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGT--DAFQEIDA 117 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhC--CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccch
Confidence 56555 899999999999997542 4433 3455555556666766677899999987322211 222 24777888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
.++++.+=. ..+...+++++..+++.|++. ..||+||-+|..
T Consensus 118 ~~~~~~~tk-~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 118 VGISRPCVK-HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhhhhcccc-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 788887654 334557888888888777643 358999999864
No 227
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=84.88 E-value=6.2 Score=39.57 Aligned_cols=117 Identities=13% Similarity=0.032 Sum_probs=65.2
Q ss_pred CCCCCcccccc-cc-chHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecC-CCcc-CC---
Q 005021 454 TPEERNVRFGV-RE-HGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHD-SIGL-GE--- 524 (719)
Q Consensus 454 ~~p~R~~d~GI-aE-~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~-g~g~-g~--- 524 (719)
..|.+|+..+- .= ...+..|.|.++... =+|++++. ..|+.-. .-+...+..++|+++++-++ +++. ..
T Consensus 41 ~~~~~~~~~~~~g~mG~~lpaaiGa~la~p-~r~vv~i~GDG~f~m~~-~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~ 118 (196)
T cd02013 41 EKPRSFIAPLSFGNCGYALPAIIGAKAAAP-DRPVVAIAGDGAWGMSM-MEIMTAVRHKLPVTAVVFRNRQWGAEKKNQV 118 (196)
T ss_pred CCCCeEEcCCCCcccccHHHHHHHHHHhCC-CCcEEEEEcchHHhccH-HHHHHHHHhCCCeEEEEEECchhHHHHHHHH
Confidence 45788886421 11 234456666655431 26777653 4554432 22444556689988887444 3331 10
Q ss_pred --CCC-----CCCChhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHH--cCCCcEEEEE
Q 005021 525 --DGP-----THQPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVA--NRKRPSILAL 574 (719)
Q Consensus 525 --dG~-----THq~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~--~~~~P~~irl 574 (719)
.+. .+.. -|.+ +.+++ |+.-+.-.+..|+..+|+.+++ +.++|++|-.
T Consensus 119 ~~~~~~~~~~~~~~-~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev 176 (196)
T cd02013 119 DFYNNRFVGTELES-ESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEI 176 (196)
T ss_pred HHcCCCcccccCCC-CCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 010 1111 1222 33333 5666677889999999999985 1489998865
No 228
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.81 E-value=6.6 Score=46.18 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=75.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ --|++++.+|-|+|+... +|-++ +...=+..+...|.++-..+.||+++....... ...-..+|.+...
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~-~~~~~~~q~~d~~ 119 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTG--KVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSN-LIGTDAFQECDML 119 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcc-ccCCCcccccchh
Confidence 66666 899999999999998642 45443 455545556666666677899999986322221 1111247777777
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
.+++.+=.. .....++.++..+++.|++ ...||++|-+|..
T Consensus 120 ~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 120 GISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred hhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 888865432 3445566666666665553 2469999999875
No 229
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.80 E-value=6.1 Score=46.46 Aligned_cols=115 Identities=11% Similarity=0.036 Sum_probs=76.2
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
-|++.+ --|++++.+|-|.|+... +|-+ .++..=+..+...|.++-..+.||+++....... .+. ..+|.+.
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d 127 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASG--KVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGK--DGFQEAD 127 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCcccccC--CCCcccc
Confidence 466665 789999999999997542 4433 3455555555556666667799999887322222 232 2367677
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
...+++.+=.. .+...+++++..+++.|++. ..||+||-+|+.
T Consensus 128 ~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 128 VVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred hhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence 77788876543 23456777787777776642 369999999875
No 230
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=84.63 E-value=6.2 Score=46.37 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=77.3
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|.|.|+... +|-| .++..-+..+...|.++-..+.||+++....... .+..-.++|.+.
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d 124 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQ--KPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELD 124 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhC--CCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccc
Confidence 366666 789999999999998742 4433 3566666677777777778899999887322211 111112467777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
+..+++.+=.. .+...++.++...++.|+ ....|||||-+|+.
T Consensus 125 ~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 125 QLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred hhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 77888876543 334456676666555544 33568999999874
No 231
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=84.24 E-value=6.4 Score=46.16 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=74.7
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=+++.+ ..|++++.+|-|.|+... +|-|+ ++..=+..+...|.++-..+.||+++....... .+. + .+|.+.
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg--~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d 120 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATG--KVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGN-D-AFQEAD 120 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCccccCC-C-Cccccc
Confidence 466666 899999999999997632 55443 455555566666777777899999986322221 232 2 355566
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..++++.+=-.. +.-.++.++..+++.|++ ..+||+||-+|+.
T Consensus 121 ~~~~~~~itk~s-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 121 ITGITMPITKHN-YLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred hhhhccCcceEE-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 667777654322 234566676666666653 2469999999874
No 232
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=83.93 E-value=7.8 Score=46.03 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=75.8
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=||+.+ --|+.++.+|.|.|+... +|-|+ +...=+.-+..-|.++-.-+.||+++....... .+. ..+|.+.
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tg--k~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~Qe~d 135 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATG--KVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGT--DAFQETD 135 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCC--CCccccc
Confidence 477777 899999999999997642 45443 455555566666777777899999987322221 132 2356666
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
...+++.+--. .....+++++..+++.|++ ...||++|-+|+.
T Consensus 136 ~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 136 IFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred HHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 66777755422 2345677777766666653 2459999999874
No 233
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=83.84 E-value=6.2 Score=37.90 Aligned_cols=101 Identities=18% Similarity=0.046 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCC------------CCCChhh
Q 005021 469 MGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGP------------THQPIEH 534 (719)
Q Consensus 469 ~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~------------THq~~ed 534 (719)
.++.|.|+++..+ =++++++ -..|.. .+..+......++|+++++..++... ..+. ......|
T Consensus 51 ~~~~a~Gaa~a~~-~~~vv~~~GDG~~~~-~~~~l~ta~~~~~~~~~iv~nN~~~~-~~~~~~~~~~~~~~~~~~~~~~d 127 (168)
T cd00568 51 GLPAAIGAALAAP-DRPVVCIAGDGGFMM-TGQELATAVRYGLPVIVVVFNNGGYG-TIRMHQEAFYGGRVSGTDLSNPD 127 (168)
T ss_pred hHHHHHHHHHhCC-CCcEEEEEcCcHHhc-cHHHHHHHHHcCCCcEEEEEECCccH-HHHHHHHHHcCCCcccccCCCCC
Confidence 3445666666542 1455544 344544 34445555677999888886665431 1010 1111223
Q ss_pred hh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 535 LA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 535 ia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+. +.++. |+......+..|+..+++.+.. .++|++|..
T Consensus 128 ~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 128 FAALAEAY-GAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred HHHHHHHC-CCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22 34433 6667777889999999999985 689998864
No 234
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=83.61 E-value=5.8 Score=46.66 Aligned_cols=116 Identities=19% Similarity=0.116 Sum_probs=74.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCcc-CCCC------CC
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GEDG------PT 528 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~-g~dG------~T 528 (719)
|++.+ --|++++.+|-|.|+... +|-+ .++.+=+..+..-|..+-..+.||+++........ +.++ ..
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tg--k~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~ 128 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTG--KPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHW 128 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhC--CCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCccc
Confidence 66766 779999999999998753 4433 35666555666666666678999999873322211 2110 12
Q ss_pred CCC-hhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 529 HQP-IEHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 529 Hq~-~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
+|. +....+++.+=. ..+...+++++..++..|++ ...|||+|-+|..
T Consensus 129 ~qe~~d~~~~~~~vtk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 129 TQEMRDQGGLVREYVK-WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred chhhhhHHHHHhhhhh-hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 344 566677776543 23455667777777666653 2478999999863
No 235
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=82.93 E-value=7.3 Score=39.20 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=65.8
Q ss_pred CCCCCcccccc-c-cchHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCC-CccCC----
Q 005021 454 TPEERNVRFGV-R-EHGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLGE---- 524 (719)
Q Consensus 454 ~~p~R~~d~GI-a-E~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~g~---- 524 (719)
..|.+|++.+- . =...++.|.|.++... =+|++++- ..|+.-+ .-+......++||++++-+++ ++.-.
T Consensus 45 ~~~~~~~~~~~~GsmG~~lpaaiGa~la~p-~~~vv~i~GDG~f~m~~-~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~ 122 (202)
T cd02006 45 YKPRHWINCGQAGPLGWTVPAALGVAAADP-DRQVVALSGDYDFQFMI-EELAVGAQHRIPYIHVLVNNAYLGLIRQAQR 122 (202)
T ss_pred CCCCeEEccCCccchhhhhHHHHhHHhhCC-CCeEEEEEeChHhhccH-HHHHHHHHhCCCeEEEEEeCchHHHHHHHHH
Confidence 45788887642 1 1113445666555431 26777653 4454332 224445667999888775554 33210
Q ss_pred --CCC-----CCCC---------hhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 005021 525 --DGP-----THQP---------IEHLA-SFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 574 (719)
Q Consensus 525 --dG~-----THq~---------~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl 574 (719)
.+. .+.. .-|.+ +-+++ |+.-+.-.+..|+..+|+.++. ..++|++|-.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 123 AFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 000 0110 01222 22332 5677788899999999999984 2589998865
No 236
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=82.89 E-value=2.1 Score=45.95 Aligned_cols=60 Identities=28% Similarity=0.235 Sum_probs=45.7
Q ss_pred cchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc-ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchh
Q 005021 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE 279 (719)
Q Consensus 201 lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG-~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~ 279 (719)
-|-.++.|.|+.+|.+ +..||++-||| ++..|. -.+.++...+. |+++|+-||+. -++|+
T Consensus 72 ~gra~a~atGik~A~~--------------~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~-dit~iv~DNev--YgnTg 132 (294)
T COG1013 72 HGRAAAVATGIKLANP--------------ALSVIVIGGDGDAYDIGG--NHLIHALRRNH-DITYIVVDNEV--YGNTG 132 (294)
T ss_pred cCcchhhHHHHHHhcc--------------CCeEEEEecchhHhhhhh--HHHHHHHHcCC-CeEEEEECCee--cccCC
Confidence 4677889999999876 44799999999 666664 46888888885 69999999874 34443
No 237
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=82.83 E-value=32 Score=33.54 Aligned_cols=115 Identities=20% Similarity=0.121 Sum_probs=63.6
Q ss_pred CCCCCccccccccch---HHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-CccCC---
Q 005021 454 TPEERNVRFGVREHG---MGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLGE--- 524 (719)
Q Consensus 454 ~~p~R~~d~GIaE~~---~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~g~--- 524 (719)
..|.+|+..+- .. .+..|.|.++.-. =++++++ -..|+.- ...+...+..++|+++++..++ ++.-.
T Consensus 38 ~~~~~~~~~~~--g~mG~~lp~aiGaala~~-~~~vv~i~GDG~f~~~-~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~ 113 (178)
T cd02002 38 TRPGSYFTLRG--GGLGWGLPAAVGAALANP-DRKVVAIIGDGSFMYT-IQALWTAARYGLPVTVVILNNRGYGALRSFL 113 (178)
T ss_pred CCCCCeeccCC--ccccchHHHHHHHHhcCC-CCeEEEEEcCchhhcc-HHHHHHHHHhCCCeEEEEEcCccHHHHHHHH
Confidence 35788887533 22 2345666655421 1555554 3555432 2234445566999988876654 33200
Q ss_pred -----C--------CC-CCCChhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 525 -----D--------GP-THQPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 525 -----d--------G~-THq~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+ +. ......|++ +.+++ |+..+.-.+..|++.+++.+++ .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 114 KRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 00 001112222 33333 4555666779999999999996 689998853
No 238
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=82.77 E-value=12 Score=39.29 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=63.7
Q ss_pred HHHHHHHHHhc----CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCC--CChhhhh-HH
Q 005021 469 MGAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH--QPIEHLA-SF 538 (719)
Q Consensus 469 ~vg~AaGlA~~----G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~TH--q~~edia-~l 538 (719)
.+++|.|+|+. +..-+.||.+ -..|.. ..++.+...+..++| +++|+...+ ++.+++++ ...+|++ .+
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~--~~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNR--IQIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCC--ccccCcHhhccCchhHHHHH
Confidence 34466776654 1112444433 555554 467777777778887 666664444 45566553 2334443 45
Q ss_pred cCCCCeEEEeeC--CHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 539 RAMPNILMLRPA--DGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 539 r~iPnl~V~~P~--d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+++ |+.++.-. |..++..+++.+.+..++|++|..
T Consensus 188 ~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 188 EAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred HHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 554 67777666 899999999988863378998875
No 239
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=82.73 E-value=7.4 Score=45.85 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=72.9
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ --|++++.+|-|.|+... +|-++ +...=+..+..-|.++-..+.||+++....... .+ .| .+|.+.+
T Consensus 43 ~~i~~-rhE~~A~~mAdgyar~tg--k~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~-~~-~~Qe~d~ 117 (578)
T PRK06546 43 EWVHV-RHEEAAAFAAAAEAQLTG--KLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIG-SG-FFQETHP 117 (578)
T ss_pred eEEEe-CcHHHHHHHHHhHHHhhC--CceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCccccC-CC-CccccCh
Confidence 56665 689999999999999743 55443 234444455566666667899999987322111 12 23 3676777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r~ 577 (719)
..+++.+=- ..+...+++++..+++.|++ ...||++|-+|..
T Consensus 118 ~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 118 DRLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred hhhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 778876533 33455566666665554432 2579999999874
No 240
>PRK12474 hypothetical protein; Provisional
Probab=82.52 E-value=9.3 Score=44.36 Aligned_cols=114 Identities=11% Similarity=0.028 Sum_probs=73.7
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ --|++++.+|-|.|+... +|-+ .++..=+..+...|.++-..+.||+++....... .+. ..||....
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg--~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 119 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAG--KPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDI 119 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhC--CCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCH
Confidence 67766 789999999999997632 5544 3455544445555555556789999887221111 121 23555666
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
.++++.+=- ..+...++.++..+++.|++ ...+|++|-+|+.
T Consensus 120 ~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 120 DGFARPVSR-WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred HHhhhcccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 678886543 23456777877777776663 2458999999985
No 241
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=81.85 E-value=20 Score=35.99 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=58.7
Q ss_pred HHHHHHHHHhc----CCCCccEEEeh--hhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCC
Q 005021 469 MGAICNGIALH----SPGLIPYCATF--FVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM 541 (719)
Q Consensus 469 ~vg~AaGlA~~----G~~~~Pv~~~y--~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~i 541 (719)
.+++|.|+|+. |. =.+++++. ..|.. ..++.+..++..+.|+++++...+. +.+++|- ... ..++.
T Consensus 80 gl~~A~G~Ala~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~--~~~~~~~-~~~--~~~~a- 152 (195)
T cd02007 80 SISAALGMAVARDLKGK-KRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEM--SISPNVG-TPG--NLFEE- 152 (195)
T ss_pred hHHHHHHHHHHHHHhCC-CCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCc--ccCCCCC-CHH--HHHHh-
Confidence 34556666654 21 13444443 44442 5677777776669999999855554 4455554 223 23443
Q ss_pred CCeEE---EeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 542 PNILM---LRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 542 Pnl~V---~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
-+..+ +-..|..++..+++.+.+ .++|++|..
T Consensus 153 ~G~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~ 187 (195)
T cd02007 153 LGFRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHV 187 (195)
T ss_pred cCCCccceECCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 24333 455577888888888775 588999865
No 242
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.84 E-value=6.1 Score=46.46 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=74.7
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ -.|++++.+|.|.|+. |+ ..+|. ++..=+..+...|.++-..+.||+++....... .+. | .+|.+.
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~--~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d 117 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGK--VGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGN-D-AFQECD 117 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCC--CeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccccCC-C-CCcccc
Confidence 366666 8999999999999976 52 33333 455444455555666666799999987332222 232 2 367677
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..++++.+=-. .....+++++...++.|++ ...||+||-+|+.
T Consensus 118 ~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 118 MIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred hhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 77888876443 2344467777776666663 2469999999875
No 243
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=81.75 E-value=4.5 Score=47.10 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEEe-hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCC--------
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCAT-FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG-------- 526 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~-y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG-------- 526 (719)
|=+-.|+-+.=..-+++|+|++..+. -++|..+ -++|.--...+|+++.+.+.++++++-..+...-..|
T Consensus 420 P~~~~d~t~~mGssig~a~g~~~~~~-k~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~ 498 (640)
T COG4231 420 PLNTVDTTTMMGSSIGIAGGLSFAST-KKIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGV 498 (640)
T ss_pred CcchhhhhhhccchhhhccccccccC-CceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCccc
Confidence 33455555555556788999986653 2455544 6888888888899999999999888765554421111
Q ss_pred ------CCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 005021 527 ------PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 527 ------~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~ 578 (719)
.++..++.+.=-..+--+.+..|-|-.++...++.|++ .++|.+|.+.|..
T Consensus 499 ~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale-~~gpsViiak~~C 555 (640)
T COG4231 499 AAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE-VPGPSVIIAKREC 555 (640)
T ss_pred ccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc-CCCceEEEEcCcc
Confidence 23445666655556666788889999999999999996 7999999876543
No 244
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=81.74 E-value=5.3 Score=47.16 Aligned_cols=114 Identities=12% Similarity=0.134 Sum_probs=72.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ .-|++++.+|.|.|+... +|-+ .++..=+..+..-|.++-..+.||+++....... .+.+ .+|.++.
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~ 127 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTG--KVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDI 127 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcC--CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC--Cccccch
Confidence 56665 799999999999997632 4544 3455555556666666667899999987322211 2322 2566666
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
.++++.+=. -.....+++++..+++.|++ ...||+||-+|..
T Consensus 128 ~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 128 FGITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred hhhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 666665432 23344566666666666553 2458999999875
No 245
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=81.31 E-value=34 Score=34.13 Aligned_cols=114 Identities=16% Similarity=0.086 Sum_probs=59.2
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcC-CEEEEEecCCCccCCCC--CCC
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEA-GVIYVMTHDSIGLGEDG--PTH 529 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~-pV~~v~~~~g~g~g~dG--~TH 529 (719)
.|.+|+..|- =...++.|.|+++... =+|++++ -..|+.- ..-+...+..++ |+++++-+++. +|..+ .+.
T Consensus 40 ~~~~~~~~g~-mG~~lpaAiGaala~p-~~~Vv~i~GDG~f~m~-~~eL~ta~~~~l~~i~ivV~NN~~-yg~~~~~~~~ 115 (188)
T cd03371 40 HAQDFLTVGS-MGHASQIALGIALARP-DRKVVCIDGDGAALMH-MGGLATIGGLAPANLIHIVLNNGA-HDSVGGQPTV 115 (188)
T ss_pred ccCceeecCc-cccHHHHHHHHHHhCC-CCcEEEEeCCcHHHhh-ccHHHHHHHcCCCCcEEEEEeCch-hhccCCcCCC
Confidence 4588886521 1223456777665431 2566654 3445422 222444455565 55555534332 22211 111
Q ss_pred -CChhhhhHHcCCCCeE-EEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 530 -QPIEHLASFRAMPNIL-MLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 530 -q~~edia~lr~iPnl~-V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
....-..+.+++ |+. +....+.+|+..+++.+++ .++|++|..
T Consensus 116 ~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 116 SFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 111111233333 343 3455799999999999996 689998865
No 246
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=81.18 E-value=8.7 Score=45.34 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=66.3
Q ss_pred ccccccccchHHHHHHHHHhc----CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCC---C
Q 005021 459 NVRFGVREHGMGAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT---H 529 (719)
Q Consensus 459 ~~d~GIaE~~~vg~AaGlA~~----G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~T---H 529 (719)
++..|+.= +.+++|.|||+. |..-+.||.+ -.+|.. .+|+.+.+++.++.|+++++...+.+. ++++ .
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si--~~~~~~~~ 185 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSI--AENHGGLY 185 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcC--CCCCchhh
Confidence 35666633 466778888764 3211233332 355555 789999888888999999997666653 3332 1
Q ss_pred CChh--------h-hhHHcCCCCeEEEeeCCHH---HHHHHHHHHHHcCCCcEEEEE
Q 005021 530 QPIE--------H-LASFRAMPNILMLRPADGN---ETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 530 q~~e--------d-ia~lr~iPnl~V~~P~d~~---e~~~~l~~a~~~~~~P~~irl 574 (719)
..+. + ...+.++ |+..+.|.|++ ++..+++.+.. .++|++|..
T Consensus 186 ~~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~-~~gP~~i~~ 240 (581)
T PRK12315 186 KNLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKD-IDHPIVLHI 240 (581)
T ss_pred hhhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1111 1 1345665 66666665555 45555555543 578999875
No 247
>PLN02790 transketolase
Probab=80.14 E-value=10 Score=45.33 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=53.2
Q ss_pred hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCC-CChhhhh-HHcCCCCeEEEee----CCHHHHHHHHHHHHHcCCC
Q 005021 496 YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH-QPIEHLA-SFRAMPNILMLRP----ADGNETAGAYKVAVANRKR 568 (719)
Q Consensus 496 ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~TH-q~~edia-~lr~iPnl~V~~P----~d~~e~~~~l~~a~~~~~~ 568 (719)
.+|+.+..++.+++| ++++....+ +.-+|++. +..+++. .++++ |+.++.+ .|..++..+++.|....++
T Consensus 153 ~~~EAl~~A~~~~L~nli~i~d~N~--~~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~ 229 (654)
T PLN02790 153 ISNEAASLAGHWGLGKLIVLYDDNH--ISIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKEAKAVTDK 229 (654)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCC--ccccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 678888888889987 676774444 45567665 3345543 67777 9999998 3566777777777643578
Q ss_pred cEEEEE
Q 005021 569 PSILAL 574 (719)
Q Consensus 569 P~~irl 574 (719)
|++|..
T Consensus 230 P~lI~~ 235 (654)
T PLN02790 230 PTLIKV 235 (654)
T ss_pred eEEEEE
Confidence 999875
No 248
>PLN02573 pyruvate decarboxylase
Probab=79.78 E-value=9.8 Score=44.86 Aligned_cols=115 Identities=18% Similarity=0.182 Sum_probs=70.1
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh---
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 532 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~--- 532 (719)
|++.+ --|++++.+|-|.|+... .++|. ++..=..-+...|.++-..+.||+++....... .+.++..||.+
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg--~gv~~~t~GpG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEecCccHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 45554 789999999999998752 56664 455444445555555556789999997322222 35555566643
Q ss_pred ---hhhhHHcCCCCeEEEeeCCHHH----HHHHHHHHHHcCCCcEEEEEcCC
Q 005021 533 ---EHLASFRAMPNILMLRPADGNE----TAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 533 ---edia~lr~iPnl~V~~P~d~~e----~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
.++.+++.+-.. .....++++ +..+++.|+. ..+|+||-+|+.
T Consensus 133 ~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~-~~gPV~l~iP~D 182 (578)
T PLN02573 133 DFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALK-ESKPVYISVSCN 182 (578)
T ss_pred ChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHh-cCCCEEEEeehh
Confidence 223556554322 222334444 4455666665 468999999885
No 249
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=79.64 E-value=12 Score=43.72 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=97.0
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 532 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ 532 (719)
.=|++.+ --||.++.+|.|.|+.-. +|=|+ +-.+=+.-+..-|.++-+-..||+++....... .|. ..+|-+
T Consensus 39 ~i~~I~~-RHEq~Aa~mAdgyar~TG--kpgV~~~tsGPGatN~~tgla~A~~d~~Pll~itGqv~~~~~g~--~afQe~ 113 (550)
T COG0028 39 GIRHILV-RHEQGAAFAADGYARATG--KPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGT--DAFQEV 113 (550)
T ss_pred CCcEEEe-ccHHHHHHHHHHHHHHcC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCccccccCc--chhhhc
Confidence 4567766 789999999999998532 55443 334444445555556566789999886322111 232 246777
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCCCCCC----C---C--CCCccccccc------
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQKLPH----L---A--GTSIDGVEKG------ 593 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~~~~~----~---~--~~~~~~~~~G------ 593 (719)
...++++.+=.. .+...+++|+-..++.|++ ...||++|-+|+.-... . . .....+...+
T Consensus 114 D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~ 192 (550)
T COG0028 114 DQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILPPYRPAPPPPEAIRK 192 (550)
T ss_pred chhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHhhcccccccccccccccCCCCCCcHHHHHH
Confidence 777888866433 3566777888777766653 24689999998742211 0 0 0001111111
Q ss_pred cEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHh
Q 005021 594 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRK 629 (719)
Q Consensus 594 ~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~ 629 (719)
.+.++.+. .+-+++++.|.....|.+...+|.+
T Consensus 193 aa~~L~~A---krPvIl~G~G~~~a~a~~~l~~lae 225 (550)
T COG0028 193 AAELLAEA---KRPVILAGGGVRRAGASEELRELAE 225 (550)
T ss_pred HHHHHHhC---CCCEEEECCCccccccHHHHHHHHH
Confidence 11222331 4568888888776666666666644
No 250
>PTZ00089 transketolase; Provisional
Probab=79.60 E-value=9.3 Score=45.81 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=54.7
Q ss_pred hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC-Chhhh-hHHcCCCCeEEEeeCCHH----HHHHHHHH
Q 005021 490 FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ-PIEHL-ASFRAMPNILMLRPADGN----ETAGAYKV 561 (719)
Q Consensus 490 y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq-~~edi-a~lr~iPnl~V~~P~d~~----e~~~~l~~ 561 (719)
-..+.. .+|+.+..++..++| ++++.. .-++.-+|+++- ..+++ ..++++ |+.++.+.|.+ ++..+++.
T Consensus 157 DG~l~eG~~~EAl~~A~~~~L~nLi~i~d--~N~~~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~~ 233 (661)
T PTZ00089 157 DGCLQEGVSQEALSLAGHLGLEKLIVLYD--DNKITIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIEE 233 (661)
T ss_pred ccchhhHHHHHHHHHHHHhCCCCEEEEEE--CCCcccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHH
Confidence 344443 678888888888987 667763 334456777762 23444 477777 99999996555 55555666
Q ss_pred HHHcCCCcEEEEE
Q 005021 562 AVANRKRPSILAL 574 (719)
Q Consensus 562 a~~~~~~P~~irl 574 (719)
+....++|++|..
T Consensus 234 a~~~~~~P~~I~~ 246 (661)
T PTZ00089 234 AKKSKGKPKLIIV 246 (661)
T ss_pred HHhcCCCcEEEEE
Confidence 6543368999976
No 251
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=79.28 E-value=12 Score=41.13 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCCCCcc-EEEe-hhhhHH---hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh----hHH
Q 005021 468 GMGAICNGIALHSPGLIP-YCAT-FFVFTD---YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL----ASF 538 (719)
Q Consensus 468 ~~vg~AaGlA~~G~~~~P-v~~~-y~~F~~---ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi----a~l 538 (719)
+++|+|-++-..|. .. |+.+ |.+=.. --++.+..++++++||+|++-+.+++.+. --..|.-.++ +.-
T Consensus 144 ~AaG~A~a~k~~~~--~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSv-p~~~q~~~~~~~~ra~a 220 (358)
T COG1071 144 LAAGAALALKYRGT--KDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISV-PRSRQTAAEIIAARAAA 220 (358)
T ss_pred HHHHHHHHHHHhCC--CCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeec-chhhcccchhHHhhhhc
Confidence 44444444445563 33 4443 222211 23455656789999999999888877651 1112433322 233
Q ss_pred cCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEE
Q 005021 539 RAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILAL 574 (719)
Q Consensus 539 r~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl 574 (719)
-.||+++| -=.|...+..+.+.|++. .++|++|-.
T Consensus 221 ygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 221 YGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred cCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 48999998 444444555555666532 468999864
No 252
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=78.96 E-value=34 Score=33.92 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhc-CCEEEEEecCCCccCCCCC--CC
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCE-AGVIYVMTHDSIGLGEDGP--TH 529 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~-~pV~~v~~~~g~g~g~dG~--TH 529 (719)
.|.+++..|- =...++.|.|+++.-. +|++++ -..|+.-+ .-+...+..+ +|+++++-+++. +|.-+. +.
T Consensus 34 ~~~~~~~~gs-mG~~lpaAiGa~la~~--~~Vv~i~GDG~f~m~~-~el~ta~~~~~~pv~~vV~NN~~-yg~~~~q~~~ 108 (181)
T TIGR03846 34 RPLNFYMLGS-MGLASSIGLGLALATD--RTVIVIDGDGSLLMNL-GVLPTIAAESPKNLILVILDNGA-YGSTGNQPTP 108 (181)
T ss_pred CCCCeeeccc-cccHHHHHHHHHHcCC--CcEEEEEcchHHHhhh-hHHHHHHHhCCCCeEEEEEeCCc-cccccCcCCC
Confidence 4777776331 1223346666665532 677765 34554222 2244445556 598887755542 332221 11
Q ss_pred C-Chhhhh-HHcCCCCeEEEe-eCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 530 Q-PIEHLA-SFRAMPNILMLR-PADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 530 q-~~edia-~lr~iPnl~V~~-P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
. ..-|.+ +.+++ |+.-.. ..+.+|+..+|+ +++ .++|++|-.
T Consensus 109 ~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~-~~~p~li~v 153 (181)
T TIGR03846 109 ASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALA-MKGPTFIHV 153 (181)
T ss_pred CCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHc-CCCCEEEEE
Confidence 1 011222 23332 344444 688999999997 775 689998865
No 253
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=78.94 E-value=5.9 Score=48.02 Aligned_cols=187 Identities=16% Similarity=0.227 Sum_probs=113.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHH---hHHHHHHHHh----hhcCCEEEEEecCCCccCCCCCCC
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTD---YMRAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTH 529 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~---ra~dqir~~a----~~~~pV~~v~~~~g~g~g~dG~TH 529 (719)
.++|.+++|.+++|+=-|.+..-.-...++ ..|.+|.. ..+||.-.+. .....+++...|. +-..||.|
T Consensus 628 ~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHg---yEGQGPEH 704 (906)
T COG0567 628 EVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHG---YEGQGPEH 704 (906)
T ss_pred EEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccCC---CCCCCCcC
Confidence 467899999999999999999864112222 46777763 4567744332 2456667666443 34478999
Q ss_pred CChhhhhH--HcCCCCeEEEeeCCHHHHHHHHH-HHHHcCCCcEEEEEcCCCCCCCC-CCCccccccccEE-EecCCCCC
Q 005021 530 QPIEHLAS--FRAMPNILMLRPADGNETAGAYK-VAVANRKRPSILALSRQKLPHLA-GTSIDGVEKGAYI-ISDNSSGN 604 (719)
Q Consensus 530 q~~edia~--lr~iPnl~V~~P~d~~e~~~~l~-~a~~~~~~P~~irl~r~~~~~~~-~~~~~~~~~G~~~-i~~~~~~~ 604 (719)
.+--...+ |++=-||+|+.|+++.....+++ .+++....|.+|.-||..+..-. ..+...+..|+.. ++.+...-
T Consensus 705 SSaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~~ 784 (906)
T COG0567 705 SSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDEL 784 (906)
T ss_pred ccchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchhhhhhhhcccccc
Confidence 76544444 44556999999999999999997 44555568999888876543210 0111222333322 22211000
Q ss_pred CC--CEEEEEeCHhHHHHHHHHHHHHhCC-CcEEEEecCChhhHHHHHH
Q 005021 605 KP--DVILIGTGSELEIAAKAAEELRKGG-KAVRVVSFVSWELFDEQSD 650 (719)
Q Consensus 605 g~--dvtIva~G~~v~~al~Aa~~L~~~G-i~v~VId~~~l~pld~~~~ 650 (719)
.. .-++++.|-+.....+. +++.| .++.+|=+..+.||..+.+
T Consensus 785 ~~~v~rvvlcSGKvyydl~~~---r~~~g~~dvaiiRiEqLyPfP~~~l 830 (906)
T COG0567 785 DPKVKRVVLCSGKVYYDLLEQ---REKDGRDDVAIVRIEQLYPFPAKAL 830 (906)
T ss_pred ccceeeEEeeccchHHHHHHH---HhhcCCcceeEEeeecccCchHHHH
Confidence 12 33455556554433332 24444 3688888889999998765
No 254
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=77.98 E-value=10 Score=44.96 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=72.4
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=||+.+ -.|++++.+|-|.|+... +|-| .++..=+..+...|.++-..+.||+++....... .+.+ ++|.+.
T Consensus 43 i~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d 117 (597)
T PRK08273 43 PEFVQA-RHEEMAAFMAVAHAKFTG--EVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALGGH--YQQEVD 117 (597)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchhhcCCC--CCCccC
Confidence 356665 789999999999997632 4444 3455555566666666667899999887322221 2322 466666
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHH----HHHHHHHcCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAG----AYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~----~l~~a~~~~~~P~~irl~r~ 577 (719)
..++++.+=---.....+++++.. +++.|+. ..+|++|-+|..
T Consensus 118 ~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~-~~gPV~i~iP~D 164 (597)
T PRK08273 118 LQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALA-ERTVTAVILPND 164 (597)
T ss_pred HHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEeCcc
Confidence 667777653011334445555544 4555554 468999999975
No 255
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=77.71 E-value=15 Score=39.56 Aligned_cols=103 Identities=12% Similarity=0.069 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCC----C----------CC--
Q 005021 469 MGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGP----T----------HQ-- 530 (719)
Q Consensus 469 ~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~----T----------Hq-- 530 (719)
.+.+|.|.++... =++|+.+ -.+|.......+-..+..++|+++++-..+. +|.-+. | .+
T Consensus 75 alpaAiGaklA~p-d~~VV~i~GDG~~~~mg~~eL~tA~r~nl~i~vIV~NN~~-YG~t~gQ~s~t~~~g~~~~~~~~g~ 152 (301)
T PRK05778 75 AIAFATGAKLANP-DLEVIVVGGDGDLASIGGGHFIHAGRRNIDITVIVENNGI-YGLTKGQASPTTPEGSKTKTAPYGN 152 (301)
T ss_pred HHHHHHHHHHHCC-CCcEEEEeCccHHHhccHHHHHHHHHHCCCcEEEEEeCch-hhcccCcccCCcCCCcccccccCCC
Confidence 4556777665532 2566655 3445434444455567789998888754432 322111 1 01
Q ss_pred --ChhhhhHHcCCCCeEEE---eeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 531 --PIEHLASFRAMPNILML---RPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 531 --~~edia~lr~iPnl~V~---~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
...|+..+..--|..-+ ...+..|+..+++.|++ +++|++|-.
T Consensus 153 ~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 153 IEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred cCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11233323222244433 68899999999999996 699999865
No 256
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=77.60 E-value=8.1 Score=51.24 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=80.3
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
-|++.+ .-|+.++-+|-|+|+... +|.++ +..+=...++..|-.+...+.||+++.. +.-....+-..+|.+.+
T Consensus 340 i~~i~~-rhErsAafmAdGyAR~Tg--kpgV~i~TsGPG~tN~l~av~eA~~d~vPlLvItg-d~p~~~~~~ga~Q~iDq 415 (1655)
T PLN02980 340 TTCIAC-FDERSLAFHALGYARGSL--KPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTA-DRPPELQDAGANQAINQ 415 (1655)
T ss_pred CeEEec-cCcchHHHHHHHHHHHhC--CCEEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEeC-CCCHHHhcCCCCcccch
Confidence 356654 899999999999998753 67663 5666666777777777788999999873 32221111124788889
Q ss_pred hhHHcCCCCeEEE--eeCCH-------HHHHHHHHHHHHcCCCcEEEEEcC
Q 005021 535 LASFRAMPNILML--RPADG-------NETAGAYKVAVANRKRPSILALSR 576 (719)
Q Consensus 535 ia~lr~iPnl~V~--~P~d~-------~e~~~~l~~a~~~~~~P~~irl~r 576 (719)
.++++.+--...- .|.+. ..+..+++.|.....|||+|-+|.
T Consensus 416 ~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 416 VNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 9999987765444 34442 445666666665456999999984
No 257
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=77.05 E-value=15 Score=39.24 Aligned_cols=105 Identities=11% Similarity=0.030 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCC----CC-------------
Q 005021 468 GMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG----PT------------- 528 (719)
Q Consensus 468 ~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG----~T------------- 528 (719)
..+.+|.|+++... =+|++.+- ..|..-....+-..+..++||++++-+++. ||.-| ++
T Consensus 64 ~alp~AiGaklA~p-d~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~-Yg~t~~Q~s~~t~~g~~~~~~p~g 141 (280)
T PRK11869 64 RAIPAATAVKATNP-ELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQV-YGLTKGQASPTTLKGFKTPTQPWG 141 (280)
T ss_pred cHHHHHHHHHHHCC-CCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHH-HhhhcceecCCCCCCcccccCCCC
Confidence 35566777766552 36777653 444443355566667889999888855432 22111 00
Q ss_pred -CCChhhhhHHc---CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 005021 529 -HQPIEHLASFR---AMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 575 (719)
Q Consensus 529 -Hq~~edia~lr---~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~ 575 (719)
-...-|+.-+. ..|.+....+.+..|+..+++.|++ .++|++|-.-
T Consensus 142 ~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~-~~Gp~lIeV~ 191 (280)
T PRK11869 142 VFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK-HKGLAIVDIF 191 (280)
T ss_pred ccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 00011222222 3333333449999999999999996 6999998763
No 258
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=76.35 E-value=11 Score=41.26 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=48.8
Q ss_pred ccEEEehh--hhHHh-HHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCC--Chhhhh---HHcCCCCeEEEeeCCHHH-
Q 005021 484 IPYCATFF--VFTDY-MRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ--PIEHLA---SFRAMPNILMLRPADGNE- 554 (719)
Q Consensus 484 ~Pv~~~y~--~F~~r-a~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq--~~edia---~lr~iPnl~V~~P~d~~e- 554 (719)
+++++++. .|.+- .++.+...+..++||++++-+.+++.+ .++.+ ...|++ ---.+|++.|=- .|..+
T Consensus 145 ~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~--~~~~~~~~~~d~~~~a~a~G~~~~~Vdg-~d~~av 221 (341)
T TIGR03181 145 NVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAIS--VPRSKQTAAPTLAQKAIAYGIPGVQVDG-NDVLAV 221 (341)
T ss_pred CEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccc--cchhhhhCCcCHHHHHhhCCCCEEEECC-CCHHHH
Confidence 55666553 46432 345566778899999999987775432 22221 222333 223566666522 23322
Q ss_pred ---HHHHHHHHHHcCCCcEEEEE
Q 005021 555 ---TAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 555 ---~~~~l~~a~~~~~~P~~irl 574 (719)
++.+++.+.. .++|++|-.
T Consensus 222 ~~a~~~A~~~a~~-~~gP~lIev 243 (341)
T TIGR03181 222 YAVTKEAVERARS-GGGPTLIEA 243 (341)
T ss_pred HHHHHHHHHHHHc-CCCCEEEEE
Confidence 2555666654 579999865
No 259
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=75.95 E-value=32 Score=40.59 Aligned_cols=254 Identities=13% Similarity=0.144 Sum_probs=148.5
Q ss_pred HHHHhhCCceEEEecCCCCCccccc-ccc-------------ccCcccCCCCCccccccccchHHHHHHHHHhcCCCCcc
Q 005021 420 NALAKTLPGLLGGSADLASSNMTLL-KMF-------------GDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIP 485 (719)
Q Consensus 420 ~~l~~~dp~iv~~saDl~~s~~~~~-~g~-------------~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~P 485 (719)
..|.++.-.|-+-+.|+..+++.-- .-| ..+..++-|=-+-|.-++|-+..|+--|.++.......
T Consensus 660 gsLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLV 739 (1017)
T KOG0450|consen 660 GSLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALV 739 (1017)
T ss_pred HHHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceE
Confidence 4677777789999999976654321 001 11111122334567889999999999999998742344
Q ss_pred EE-EehhhhH---HhHHHHHHHH--h--hhcCCEEEEEecCCCccCCCCCCCCChhhhhHHc-------CCC--------
Q 005021 486 YC-ATFFVFT---DYMRAAIRIS--A--LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR-------AMP-------- 542 (719)
Q Consensus 486 v~-~~y~~F~---~ra~dqir~~--a--~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr-------~iP-------- 542 (719)
++ +.|.+|. |...||.... + ++...+++...| | +-..||-|.+---.-+|. .+|
T Consensus 740 lWEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPH-G--yeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~ 816 (1017)
T KOG0450|consen 740 LWEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPH-G--YEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQR 816 (1017)
T ss_pred EeehhhccccccchhhHHhHhccchhhhhhhcCeEEEccC-C--cCCCCcccccccHHHHHHhccCCCccCCcccHHHHH
Confidence 44 4688886 4668885433 2 356667776644 3 344688887543333322 122
Q ss_pred -----CeEEEeeCCHHHHHHHHHHHHH-cCCCcEEEEEcCCCCCCCCC-CCccccccc-c-EEEecCCC-----CCCCCE
Q 005021 543 -----NILMLRPADGNETAGAYKVAVA-NRKRPSILALSRQKLPHLAG-TSIDGVEKG-A-YIISDNSS-----GNKPDV 608 (719)
Q Consensus 543 -----nl~V~~P~d~~e~~~~l~~a~~-~~~~P~~irl~r~~~~~~~~-~~~~~~~~G-~-~~i~~~~~-----~~g~dv 608 (719)
|+.|+.++++.....+|+.-+. ....|.+|..||.-+..-.. .+..++.-| . -+++.+.+ +.+-+=
T Consensus 817 Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkr 896 (1017)
T KOG0450|consen 817 QLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKR 896 (1017)
T ss_pred HHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceE
Confidence 5689999999999999986653 34689999998865432110 111112222 1 11222110 013456
Q ss_pred EEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhcc-CCCceEEEEccccccCchhhh
Q 005021 609 ILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP-AAVSARVSIEAGSTFGWEKIV 679 (719)
Q Consensus 609 tIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~-~~~~~vvvvE~~~~~G~~~~~ 679 (719)
+|+.+|-....-.+..+....+ -++.+.-+-.|.||..+.+. ..+.+ .+..++.--||+...|...|+
T Consensus 897 lv~csGkVyydL~k~Rk~~~~~-~~vAi~RvEQl~PFp~dli~--~e~~~YpnaEivWcQEE~~NmG~w~Yv 965 (1017)
T KOG0450|consen 897 LVFCSGKVYYDLTKERKEVGLE-GDVAITRVEQLSPFPFDLIQ--QELNKYPNAEIVWCQEEHKNMGAWDYV 965 (1017)
T ss_pred EEEecceEehhhhHHHHhcCcc-cceeEEEeeccCCCcHHHHH--HHHHhCCCceeeehhhhhcccCchhhc
Confidence 6788898766555555543212 36777777788888776653 22222 223444555888777744443
No 260
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=75.32 E-value=6.3 Score=46.01 Aligned_cols=115 Identities=16% Similarity=0.026 Sum_probs=72.8
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCC--------
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGP-------- 527 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~-------- 527 (719)
|++.+ --|++++.+|.|.|+... +.+|. ++..-+..+..-|.++-..+.||+++....... .+.+-.
T Consensus 41 ~~v~~-rhE~~A~~mAdgyar~tg--~gv~~~t~GPG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 117 (539)
T TIGR03393 41 CWVGC-ANELNAAYAADGYARCKG--AAALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDG 117 (539)
T ss_pred cEecc-CCcccHHHHhhhhhhhcC--ceEEEEecCccHHHHhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCC
Confidence 56655 889999999999999753 46664 566666666666666666799999987322110 000001
Q ss_pred CCCChhhhhHHcCCCCe-EEEeeCC-HHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 005021 528 THQPIEHLASFRAMPNI-LMLRPAD-GNETAGAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 528 THq~~edia~lr~iPnl-~V~~P~d-~~e~~~~l~~a~~~~~~P~~irl~r~~ 578 (719)
.+|.. ..+++.+=-. .++.|.+ +.++..+++.|+. ..+|++|-+|+.-
T Consensus 118 ~~q~~--~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~-~~gPv~l~iP~Dv 167 (539)
T TIGR03393 118 DFRHF--YRMAAEVTVAQAVLTEQNATAEIDRVITTALR-ERRPGYLMLPVDV 167 (539)
T ss_pred chHHH--HHHhhceEEEEEEeChhhhHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 12221 2344432111 1225666 7889999999996 4799999999753
No 261
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=75.22 E-value=91 Score=33.25 Aligned_cols=106 Identities=10% Similarity=-0.019 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC--------------C-
Q 005021 468 GMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--------------Q- 530 (719)
Q Consensus 468 ~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH--------------q- 530 (719)
..+.+|.|.++.-. =++++++ -..|+.-....+-..+..++||++++-+++. +|.-+... .
T Consensus 72 ~alPaAiGaklA~P-dr~VV~i~GDG~f~~~g~~el~ta~r~nlpi~iIV~NN~~-yGmt~~Q~~~~t~~g~~~~~~~~g 149 (277)
T PRK09628 72 RAVAYATGIKLANP-DKHVIVVSGDGDGLAIGGNHTIHGCRRNIDLNFILINNFI-YGLTNSQTSPTTPKGMWTVTAQYG 149 (277)
T ss_pred cHHHHHHHHHHHCC-CCeEEEEECchHHHHhhHHHHHHHHHhCcCeEEEEEEChH-HhcceecccCCCCCCceeeeccCC
Confidence 56667777766431 2566655 3445431111122356779998888855433 33222000 0
Q ss_pred ---ChhhhhHHcCCCCeEE---EeeCCHHHHHHHHHHHHHcCCCcEEEEEcC
Q 005021 531 ---PIEHLASFRAMPNILM---LRPADGNETAGAYKVAVANRKRPSILALSR 576 (719)
Q Consensus 531 ---~~edia~lr~iPnl~V---~~P~d~~e~~~~l~~a~~~~~~P~~irl~r 576 (719)
+..|.+-+..-=|+.- ....++.|++.+++.|++ .++|++|-...
T Consensus 150 ~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~-~~Gp~lIeV~~ 200 (277)
T PRK09628 150 NIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS-HKGFSFFDVFS 200 (277)
T ss_pred CcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh-CCCCEEEEEcC
Confidence 1112222221113332 578999999999999996 69999997643
No 262
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=74.29 E-value=12 Score=40.23 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhhcCCEEEEEecCCCccCC---CCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCc
Q 005021 496 YMRAAIRISALCEAGVIYVMTHDSIGLGE---DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRP 569 (719)
Q Consensus 496 ra~dqir~~a~~~~pV~~v~~~~g~g~g~---dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P 569 (719)
..++.+..+++.++||+|++.+.+++.+. ...+-..+.|.+..-.||+++| -=.|..++..+++.|++. .++|
T Consensus 139 ~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP 217 (300)
T PF00676_consen 139 DFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGP 217 (300)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--
T ss_pred ccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhccCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCC
Confidence 45667777899999999999888877532 1111223566666667888775 446666666677777633 4789
Q ss_pred EEEEE
Q 005021 570 SILAL 574 (719)
Q Consensus 570 ~~irl 574 (719)
++|-.
T Consensus 218 ~lie~ 222 (300)
T PF00676_consen 218 VLIEA 222 (300)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98864
No 263
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=73.00 E-value=22 Score=41.56 Aligned_cols=117 Identities=17% Similarity=0.085 Sum_probs=71.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCC-CCC--
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPT-HQP-- 531 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~T-Hq~-- 531 (719)
|++.+ --|++++-+|-|.|+.-. +|-| .++..=...+...|..+...+.||+++....... .+.+... ||.
T Consensus 40 ~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~ 116 (535)
T TIGR03394 40 PLHTL-SHEPAVGFAADAAARYRG--TLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRT 116 (535)
T ss_pred eEEcc-cCcchHHHHHhHHHHhhC--CceEEEEecchHHHhhhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccc
Confidence 67764 899999999999998642 4433 3455545555566666667899999987322211 2332222 454
Q ss_pred hh-hhhHHcCCCCe--EEEeeCC-HHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 005021 532 IE-HLASFRAMPNI--LMLRPAD-GNETAGAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 532 ~e-dia~lr~iPnl--~V~~P~d-~~e~~~~l~~a~~~~~~P~~irl~r~~ 578 (719)
+. +..+++.+=-. .|..|.+ +..+..+++.|+. ..+|++|-+|+.-
T Consensus 117 ~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv 166 (535)
T TIGR03394 117 LDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRDM 166 (535)
T ss_pred hHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechhh
Confidence 32 34667755322 2333433 3345566666665 5799999999853
No 264
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=72.28 E-value=24 Score=41.63 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCC----CCccEEEeh--hhhH-HhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC-----CChhhh-
Q 005021 469 MGAICNGIALHSP----GLIPYCATF--FVFT-DYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH-----QPIEHL- 535 (719)
Q Consensus 469 ~vg~AaGlA~~G~----~~~Pv~~~y--~~F~-~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH-----q~~edi- 535 (719)
.+++|.|+|+.-+ .-++++++. ..|. ...++.+..++..+.|++++....+.+ -+|++- ...+++
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~--i~~~~~~~~~~~~~~~~~ 199 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMS--ISPNVGALSNYLARLRSS 199 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCc--CCCcchhhhhhhccccHH
Confidence 4456777765421 124555543 4443 256777877777779999888555543 445442 112222
Q ss_pred hHHcCCCCeEEEee---CCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 536 ASFRAMPNILMLRP---ADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 536 a~lr~iPnl~V~~P---~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
..+++. |+.++.+ .|..++..+++.+.. .++|++|..
T Consensus 200 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~ 239 (580)
T PRK05444 200 TLFEEL-GFNYIGPIDGHDLDALIETLKNAKD-LKGPVLLHV 239 (580)
T ss_pred HHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 244544 5655544 677888888887775 579998875
No 265
>PRK12753 transketolase; Reviewed
Probab=71.85 E-value=17 Score=43.54 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=50.3
Q ss_pred hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC-Chhhhh-HHcCCCCeEEEeeCCHHHHHHH---HHHHHHcCCCc
Q 005021 496 YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ-PIEHLA-SFRAMPNILMLRPADGNETAGA---YKVAVANRKRP 569 (719)
Q Consensus 496 ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq-~~edia-~lr~iPnl~V~~P~d~~e~~~~---l~~a~~~~~~P 569 (719)
..|+.+..++..++| ++++. +.-++.-+|+++- ..++++ .++++ |+.++.+.|++|+..+ ++.|....++|
T Consensus 162 ~~~EA~~~A~~~kL~nLi~iv--d~N~~~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P 238 (663)
T PRK12753 162 ISHEVCSLAGTLGLGKLIGFY--DHNGISIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEAQSVKDKP 238 (663)
T ss_pred HHHHHHHHHHHHCCCCEEEEE--ECCCCcCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHHHHCCCCe
Confidence 578888888889997 66666 3334455677763 224433 56776 8999877777765554 44454434789
Q ss_pred EEEEE
Q 005021 570 SILAL 574 (719)
Q Consensus 570 ~~irl 574 (719)
++|..
T Consensus 239 ~~I~~ 243 (663)
T PRK12753 239 SLIIC 243 (663)
T ss_pred EEEEE
Confidence 99975
No 266
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=68.47 E-value=9.1 Score=42.46 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=55.0
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|..|-||+.|+|...|. .+..|+=+=||+++. +..--|..+...+++=-|.|+||.++.+-.-
T Consensus 523 LGtMGfGLPAAIGAsVA~--------------P~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeqGMVtQ 586 (675)
T KOG4166|consen 523 LGTMGFGLPAAIGASVAN--------------PDAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQGMVTQ 586 (675)
T ss_pred ccccccCcchhhcccccC--------------cccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhhhhHHH
Confidence 456788999999988763 277899999999985 3333456677788864445555444432110
Q ss_pred hh-h----------hcchhHHHHHhccCceEEEE
Q 005021 278 TE-I----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~-~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
-. . ..+.++.+...++|++.++|
T Consensus 587 Wq~lFYe~rysHThQ~nPnf~klA~AmGikalRV 620 (675)
T KOG4166|consen 587 WQDLFYEARYSHTHQENPNFLKLAAAMGIKALRV 620 (675)
T ss_pred HHHHHHHhhhccccccCccHHHHHHhcCCchhee
Confidence 00 0 11345777777888877765
No 267
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=67.68 E-value=20 Score=39.35 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=50.5
Q ss_pred ccEEEeh--hhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC-----CChhhhhHHcCCCCeEEEeeCCHHHH
Q 005021 484 IPYCATF--FVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH-----QPIEHLASFRAMPNILMLRPADGNET 555 (719)
Q Consensus 484 ~Pv~~~y--~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH-----q~~edia~lr~iPnl~V~~P~d~~e~ 555 (719)
+++++++ ..|.+ ..++.+...+..++||+|++-+.+++++. +++ ..+.+.+---.+|+++|=-+ |..++
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~--~~~~~~~~~d~a~~a~a~G~~~~~Vdg~-d~~av 234 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGM--AHHRSTSIPEIHKKAEAFGLPGIEVDGM-DVLAV 234 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeec--chhheeCCccHHHHHHhCCCCEEEEeCC-CHHHH
Confidence 4555554 33432 23445556678999999999888865442 221 12344444447888877443 44444
Q ss_pred H----HHHHHHHHcCCCcEEEEE
Q 005021 556 A----GAYKVAVANRKRPSILAL 574 (719)
Q Consensus 556 ~----~~l~~a~~~~~~P~~irl 574 (719)
. .+++.+.. .++|++|-.
T Consensus 235 ~~a~~~A~~~ar~-~~gP~lIev 256 (341)
T CHL00149 235 REVAKEAVERARQ-GDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 4 44444443 578998864
No 268
>PRK06163 hypothetical protein; Provisional
Probab=65.62 E-value=1.1e+02 Score=30.92 Aligned_cols=114 Identities=16% Similarity=0.104 Sum_probs=61.3
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHh-hhcCCEEEEEecC-CCccCCCCCCCC
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISA-LCEAGVIYVMTHD-SIGLGEDGPTHQ 530 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a-~~~~pV~~v~~~~-g~g~g~dG~THq 530 (719)
.|.+|+..| +=...+..|.|.++... =++++++. ..|+.-+ .-+...+ +.++|+++++-++ +++. ..+..+.
T Consensus 49 ~~~~~~~~G-sMG~glpaAiGaalA~p-~r~Vv~i~GDG~f~m~~-~eL~Ta~~~~~lpi~ivV~NN~~yg~-~~~~~~~ 124 (202)
T PRK06163 49 RPQNFYMLG-SMGLAFPIALGVALAQP-KRRVIALEGDGSLLMQL-GALGTIAALAPKNLTIIVMDNGVYQI-TGGQPTL 124 (202)
T ss_pred CCCCeEeec-ccccHHHHHHHHHHhCC-CCeEEEEEcchHHHHHH-HHHHHHHHhcCCCeEEEEEcCCchhh-cCCccCC
Confidence 466776422 11223335666665432 26777654 3443332 2233333 4577877776555 3432 1111111
Q ss_pred --Chhhhh-HHcCCCCeE-EEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 531 --PIEHLA-SFRAMPNIL-MLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 531 --~~edia-~lr~iPnl~-V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
..-|.+ +.+++ |+. -+.-.+.+|+..+|+.+++ .++|++|-+
T Consensus 125 ~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV 170 (202)
T PRK06163 125 TSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALS-GPGPSFIAV 170 (202)
T ss_pred CCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 112323 33433 454 4567899999999999996 699998865
No 269
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=64.88 E-value=27 Score=36.97 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=48.7
Q ss_pred cEEEEEEcccc--cChhHHHHHHHHhhhcCCCcEEEEEeCC--CCCcccchhhh---cch-hHHHHHhccCceEEEE
Q 005021 232 HYTYVILGDGC--QMEGIANEASSLAGHLGLGKLIAFYDDN--HISIDGDTEIA---FTE-NVDKRFEGLGWHVIWV 300 (719)
Q Consensus 232 ~~v~~iiGDG~--~~eG~~~EAln~A~~~~L~nli~ivddN--~~sis~~~~~~---~~~-~~~~~~~a~G~~~~~v 300 (719)
.+++.++.||+ .++|..-+++..|...+..-+++++|+. +.||-...... ... .+..+|..|++++.-|
T Consensus 165 ~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~ 241 (266)
T cd01460 165 WQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVI 241 (266)
T ss_pred ccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEE
Confidence 38999999999 9999998888899998886455555553 45554321111 112 6778899999998765
No 270
>PRK06154 hypothetical protein; Provisional
Probab=63.91 E-value=48 Score=39.02 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=70.1
Q ss_pred CCccccccccchHHHHHHHHHhc-C-CCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCC
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-S-PGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQP 531 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G-~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~ 531 (719)
=|++.+ --|++++.+|.|.|+. | . +|-+ .++..=+..+..-|.++...+.||+++....... .+.+ +.
T Consensus 55 i~~i~~-rhE~~A~~mAdgyar~t~g~--~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-~~--- 127 (565)
T PRK06154 55 IRPVIA-RTERVAVHMADGYARATSGE--RVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA-PN--- 127 (565)
T ss_pred CeEEee-CcHHHHHHHHHHHHHhcCCC--CCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccccCC-CC---
Confidence 466665 8999999999999985 2 2 4444 3455555556666666677899999986221111 1211 12
Q ss_pred hhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 532 IEHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 532 ~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
+....+++.+=- ......++.++..+++.|++ ...||+||-+|+.
T Consensus 128 ~d~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 128 FESLRNYRHITK-WCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred cchhhhHhhcce-eEEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchH
Confidence 233456666543 33455666766666655552 2469999999874
No 271
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=63.32 E-value=38 Score=36.75 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=52.1
Q ss_pred ccEEEeh--hhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC-----CChhhhhHHcCCCCeEEEeeCCHHHH
Q 005021 484 IPYCATF--FVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH-----QPIEHLASFRAMPNILMLRPADGNET 555 (719)
Q Consensus 484 ~Pv~~~y--~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH-----q~~edia~lr~iPnl~V~~P~d~~e~ 555 (719)
+++++++ ..|.+ ..++.+...+..++||++++.+.+++.. .++. -.+.+++---.+|.++| -=.|..++
T Consensus 133 ~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s--~~~~~~~~~~~~a~~A~a~G~~~~~V-dg~d~~av 209 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMG--TSVERSSSVTDLYKRGESFGIPGERV-DGMDVLAV 209 (315)
T ss_pred CEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcccc--CCHHHHhCCcCHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 4555544 44643 2345566678899999999988765532 2211 12344444447787765 23356666
Q ss_pred HHHHHHHHH---cCCCcEEEEE
Q 005021 556 AGAYKVAVA---NRKRPSILAL 574 (719)
Q Consensus 556 ~~~l~~a~~---~~~~P~~irl 574 (719)
..+++.|++ ..++|++|-.
T Consensus 210 ~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 210 REAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 666666553 3478998865
No 272
>PRK05899 transketolase; Reviewed
Probab=62.70 E-value=57 Score=38.92 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=53.3
Q ss_pred hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC-Chhhh-hHHcCCCCeEEEeeC--CHHHHHHHHHHHH
Q 005021 490 FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ-PIEHL-ASFRAMPNILMLRPA--DGNETAGAYKVAV 563 (719)
Q Consensus 490 y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq-~~edi-a~lr~iPnl~V~~P~--d~~e~~~~l~~a~ 563 (719)
-..|.. ..++.+...+..++| +++|+...+. +.++++.. ..+|+ ..++++ |+.++.-- |..++..+++.+.
T Consensus 159 DG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~--~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~ 235 (624)
T PRK05899 159 DGDLMEGISHEACSLAGHLKLGNLIVIYDDNRI--SIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAIDAAIEEAK 235 (624)
T ss_pred cchhhchHHHHHHHHHHHhCCCCEEEEEECCCC--cccccccccccccHHHHhccC-CCeEEEECCCCHHHHHHHHHHHH
Confidence 455654 457777777788987 6666644444 44444432 12343 355665 77777655 7889999999888
Q ss_pred HcCCCcEEEEE
Q 005021 564 ANRKRPSILAL 574 (719)
Q Consensus 564 ~~~~~P~~irl 574 (719)
. .++|++|..
T Consensus 236 ~-~~~P~vI~v 245 (624)
T PRK05899 236 A-STKPTLIIA 245 (624)
T ss_pred h-cCCCEEEEE
Confidence 5 579998875
No 273
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=62.62 E-value=51 Score=36.52 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=44.4
Q ss_pred hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEE
Q 005021 496 YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSI 571 (719)
Q Consensus 496 ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~ 571 (719)
..++.+..++..++||+|++-+.+++.+.--.-+....+++ ....+|++.| -=-|..++..+++.|++ . ++|++
T Consensus 176 ~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~-~gP~l 253 (362)
T PLN02269 176 QLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALS-NGPIV 253 (362)
T ss_pred HHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHh-CCCEE
Confidence 45677777889999999999777765432111112223331 1235788776 22333344444455442 3 78999
Q ss_pred EEE
Q 005021 572 LAL 574 (719)
Q Consensus 572 irl 574 (719)
|-.
T Consensus 254 Ie~ 256 (362)
T PLN02269 254 LEM 256 (362)
T ss_pred EEE
Confidence 875
No 274
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=62.35 E-value=41 Score=35.96 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=51.0
Q ss_pred ccEEEeh--hhhHHh-HHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCC--Chhhhh---HHcCCCCeEEEeeCCHHHH
Q 005021 484 IPYCATF--FVFTDY-MRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ--PIEHLA---SFRAMPNILMLRPADGNET 555 (719)
Q Consensus 484 ~Pv~~~y--~~F~~r-a~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq--~~edia---~lr~iPnl~V~~P~d~~e~ 555 (719)
+++++++ ..|.+- .++.+...+..++||++++.+++++. ..++.. +..|++ ---.+|++.| -=.|..++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v 203 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAI--STPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAV 203 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeec--cCCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 3444443 446442 34567777889999999998776543 222221 122333 2335666544 22356677
Q ss_pred HHHHHHHHH---cCCCcEEEEE
Q 005021 556 AGAYKVAVA---NRKRPSILAL 574 (719)
Q Consensus 556 ~~~l~~a~~---~~~~P~~irl 574 (719)
...++.|++ ..++|++|-+
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 777777663 2478998865
No 275
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=61.42 E-value=88 Score=30.90 Aligned_cols=119 Identities=13% Similarity=0.008 Sum_probs=63.8
Q ss_pred CCCCCcccccc--ccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCC-ccC---C-
Q 005021 454 TPEERNVRFGV--REHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GLG---E- 524 (719)
Q Consensus 454 ~~p~R~~d~GI--aE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~-g~g---~- 524 (719)
..|.+++..+- +=...++.|.|.++.-. -++++.+ -..|+.-..+ +...+..++|+++++.+++. +.. .
T Consensus 38 ~~~~~~~~~~~~g~mG~~l~~aiGaala~~-~~~vv~i~GDG~f~~~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~ 115 (183)
T cd02005 38 PKGTRFISQPLWGSIGYSVPAALGAALAAP-DRRVILLVGDGSFQMTVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHG 115 (183)
T ss_pred CCCCEEEeccchhhHhhhHHHHHHHHHhCC-CCeEEEEECCchhhccHHH-HHHHHHhCCCCEEEEEECCCcEEEEEecc
Confidence 34677776421 11123345566554431 2566554 4566433322 44555667887777655543 321 0
Q ss_pred CCCCCCC--hhhhh-HHcCC---CCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 525 DGPTHQP--IEHLA-SFRAM---PNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 525 dG~THq~--~edia-~lr~i---Pnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
.+..+.. ..|.. +..++ |++..+...+..|+..+++.++++.++|++|-.
T Consensus 116 ~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev 171 (183)
T cd02005 116 PEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEV 171 (183)
T ss_pred CCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111111 12222 33333 236677778999999999999962489998865
No 276
>PRK12754 transketolase; Reviewed
Probab=61.35 E-value=37 Score=40.79 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=48.0
Q ss_pred hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC-Chhhhh-HHcCCCCeEEEeeCCHHHHHHH---HHHHHHcCCCc
Q 005021 496 YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ-PIEHLA-SFRAMPNILMLRPADGNETAGA---YKVAVANRKRP 569 (719)
Q Consensus 496 ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq-~~edia-~lr~iPnl~V~~P~d~~e~~~~---l~~a~~~~~~P 569 (719)
..++.+..++..++| ++++. |.-++.-||+|.- ..+|++ .+++. |+.++...|.+|+.++ ++.|....++|
T Consensus 162 ~~~EA~~~A~~~kL~nLi~iv--D~N~~~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~P 238 (663)
T PRK12754 162 ISHEVCSLAGTLKLGKLIAFY--DDNGISIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDKP 238 (663)
T ss_pred HHHHHHHHHHHhCCCCEEEEE--EcCCCccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCCC
Confidence 467777777889999 46666 4444566888863 235544 45555 7776654466655544 44444334789
Q ss_pred EEEEE
Q 005021 570 SILAL 574 (719)
Q Consensus 570 ~~irl 574 (719)
++|..
T Consensus 239 t~I~~ 243 (663)
T PRK12754 239 SLLMC 243 (663)
T ss_pred EEEEE
Confidence 99975
No 277
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=60.74 E-value=35 Score=40.93 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=47.9
Q ss_pred hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC-Chhhhh-HHcCCCCeEEEeeCCHHHHH---HHHHHHHHcCCCc
Q 005021 496 YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ-PIEHLA-SFRAMPNILMLRPADGNETA---GAYKVAVANRKRP 569 (719)
Q Consensus 496 ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq-~~edia-~lr~iPnl~V~~P~d~~e~~---~~l~~a~~~~~~P 569 (719)
..|+.+..++..++| +++++ +.-++.-+|+|.- ..++++ .+++. |+.++.-.|.+|+. .+++.+....++|
T Consensus 158 ~~~EA~~~A~~~~L~nLi~iv--d~N~~~i~~~~~~~~~~~~~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P 234 (653)
T TIGR00232 158 ISYEVASLAGHLKLGKLIVLY--DSNRISIDGAVDGSFTEDVAKRFEAY-GWEVLEVEDGHDLAAIDAAIEEAKASKDKP 234 (653)
T ss_pred HHHHHHHHHHHhCCCcEEEEE--eCCCeeeccccccccCccHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHhCCCCC
Confidence 577887778889999 55556 4444556777652 234444 56666 88887754655544 4444444322489
Q ss_pred EEEEE
Q 005021 570 SILAL 574 (719)
Q Consensus 570 ~~irl 574 (719)
++|..
T Consensus 235 ~~I~~ 239 (653)
T TIGR00232 235 TLIEV 239 (653)
T ss_pred EEEEE
Confidence 99976
No 278
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=58.07 E-value=78 Score=31.18 Aligned_cols=110 Identities=16% Similarity=0.093 Sum_probs=56.1
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhc-CCEEEEE-ecCCCccCCCCCCC-
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCE-AGVIYVM-THDSIGLGEDGPTH- 529 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~-~pV~~v~-~~~g~g~g~dG~TH- 529 (719)
.|.+++..|. =...+..|.|+++... ++++++. ..|..- ...+...+..+ .|+++++ .+.+++. .+..+
T Consensus 34 ~~~~~~~~g~-mG~~lp~AiGaala~~--~~vv~i~GDG~f~m~-~~el~ta~~~~~~~l~vvV~NN~~~~~--~~~~~~ 107 (179)
T cd03372 34 RPLNFYMLGS-MGLASSIGLGLALAQP--RKVIVIDGDGSLLMN-LGALATIAAEKPKNLIIVVLDNGAYGS--TGNQPT 107 (179)
T ss_pred cccccccccc-hhhHHHHHHHHHhcCC--CcEEEEECCcHHHhC-HHHHHHHHHcCCCCEEEEEEcCccccc--cCCCCC
Confidence 4677764222 1122336777777653 6677653 445321 22344444444 4565554 4444432 22211
Q ss_pred ---CChhhhhHHcCCCCeEEEeeC-CHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 530 ---QPIEHLASFRAMPNILMLRPA-DGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 530 ---q~~edia~lr~iPnl~V~~P~-d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
....-..+.+++ |+..+... +.+|+..+++.+. ++|.+|-.
T Consensus 108 ~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~lIev 152 (179)
T cd03372 108 HAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPSFIHV 152 (179)
T ss_pred CCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCEEEEE
Confidence 111111222322 44444555 8999999999887 68988764
No 279
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=56.41 E-value=43 Score=39.87 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=60.5
Q ss_pred HHHHHHHHHhc----CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCCh----------
Q 005021 469 MGAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI---------- 532 (719)
Q Consensus 469 ~vg~AaGlA~~----G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~---------- 532 (719)
.+++|.|||+. |.+.+.||.+ -..+-. ..|+.+..++..++|+++++...+. +-++++..-.
T Consensus 116 ~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~--~i~~~~~~~~~~l~~~~~~~ 193 (617)
T TIGR00204 116 SISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEM--SISENVGALSNHLAQLRSGS 193 (617)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEEEECCCc--ccCCCchHHHHHHHHhhccc
Confidence 56777787763 3212334333 233332 6889988888999999888855444 4455543100
Q ss_pred -------------------hh-h---------------hHHcCCCCeEEEeeCCHHHHHHHHHHH--HHcCCCcEEEEE
Q 005021 533 -------------------EH-L---------------ASFRAMPNILMLRPADGNETAGAYKVA--VANRKRPSILAL 574 (719)
Q Consensus 533 -------------------ed-i---------------a~lr~iPnl~V~~P~d~~e~~~~l~~a--~~~~~~P~~irl 574 (719)
.+ + .+|+++ |+.++-|.|++|+..+.+.. ++..++|++|..
T Consensus 194 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~-G~~~~~~vDGhd~~~l~~al~~ak~~~~P~~i~~ 271 (617)
T TIGR00204 194 LYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEEL-GFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHI 271 (617)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHc-CCcEEcccCCCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 00 0 124444 66677798988776665432 223578999976
No 280
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=56.22 E-value=63 Score=38.70 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=60.4
Q ss_pred HHHHHHHHh----cCCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC---CChhh------
Q 005021 470 GAICNGIAL----HSPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH---QPIEH------ 534 (719)
Q Consensus 470 vg~AaGlA~----~G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH---q~~ed------ 534 (719)
+++|.|+|+ .+..-+.+|.+ ...|.. .+|+.+..++..++|+++++...+.. -+|++- .-+++
T Consensus 125 lg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~--i~~~~~~~~~~l~~~~~~~~ 202 (641)
T PRK12571 125 ISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMS--IAPPVGALAAYLSTLRSSDP 202 (641)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCee--ecCCccHHHHHHHHHhcCcc
Confidence 455666554 33212444433 556643 56777777777778999998655554 345441 10111
Q ss_pred ------------------------------------hhHHcCCCCeEEEeeCCHHHHHHHHHH---HHHcCCCcEEEEE
Q 005021 535 ------------------------------------LASFRAMPNILMLRPADGNETAGAYKV---AVANRKRPSILAL 574 (719)
Q Consensus 535 ------------------------------------ia~lr~iPnl~V~~P~d~~e~~~~l~~---a~~~~~~P~~irl 574 (719)
...|+++ |+.++-|.|++|+..+.+. +-...++|++|..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~-G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~~ 280 (641)
T PRK12571 203 FARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEEL-GFTYVGPIDGHDMEALLSVLRAARARADGPVLVHV 280 (641)
T ss_pred hHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHc-CCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 1455666 7888888888877765543 3221478999976
No 281
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=54.33 E-value=10 Score=42.65 Aligned_cols=61 Identities=33% Similarity=0.459 Sum_probs=38.7
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCC
Q 005021 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNH 271 (719)
Q Consensus 194 i~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~ 271 (719)
.++.-+..|.=++-++|.-+|. .+.-||+++|||+.. |.+--|..+-.+++ ++++++-||.
T Consensus 439 ~EYgfSCMGYEiaG~lG~K~a~--------------pdreV~vmVGDGSym--MlnSEL~Tsv~~g~-Ki~Vvl~DN~ 499 (617)
T COG3962 439 LEYGFSCMGYEIAGGLGAKAAE--------------PDREVYVMVGDGSYM--MLNSELATSVMLGK-KIIVVLLDNR 499 (617)
T ss_pred eeecccccccccccccccccCC--------------CCCeEEEEEcccchh--hhhHHHHHHHHcCC-eEEEEEECCC
Confidence 3444445666666666665332 367799999999975 34444556666775 5776666663
No 282
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=52.43 E-value=1.3e+02 Score=34.38 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=63.2
Q ss_pred CCCCCccccccccchHHHHHHHHHh------cCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEe-cCCCccCC
Q 005021 454 TPEERNVRFGVREHGMGAICNGIAL------HSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMT-HDSIGLGE 524 (719)
Q Consensus 454 ~~p~R~~d~GIaE~~~vg~AaGlA~------~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~-~~g~g~g~ 524 (719)
+.|-|.+|.|- .+-+|+..|+|+ -+ ++++++ -+.|-.-+++ +-..+..|+||++++. +.|+ ||-
T Consensus 418 ~~Pr~rLDaGt--fgTMGVG~Gfalaaa~~~P~---~~V~~veGDsaFGfSaME-~ET~vR~~Lpvv~vV~NN~Gi-yg~ 490 (571)
T KOG1185|consen 418 RGPRRRLDAGT--FGTMGVGLGFALAAALAAPD---RKVVCVEGDSAFGFSAME-LETFVRYKLPVVIVVGNNNGI-YGL 490 (571)
T ss_pred CCcccccCCcc--ccccccchhHHHHHHhhCCC---CeEEEEecCcccCcchhh-HHHHHHhcCCeEEEEecCCcc-ccc
Confidence 67899999874 233333333333 34 556654 3455433322 2235778999888775 4444 443
Q ss_pred C--CCCCCC----hhhhhHHcCCCCe-----------EEEeeCCHHHHHHHHHHHHHcCCCcEEEE
Q 005021 525 D--GPTHQP----IEHLASFRAMPNI-----------LMLRPADGNETAGAYKVAVANRKRPSILA 573 (719)
Q Consensus 525 d--G~THq~----~edia~lr~iPnl-----------~V~~P~d~~e~~~~l~~a~~~~~~P~~ir 573 (719)
| |++.-. ..|+.-..-.+|. +=+.=.+.+|+...++.+.+..++|++|-
T Consensus 491 d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvIN 556 (571)
T KOG1185|consen 491 DDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVIN 556 (571)
T ss_pred CcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 3 222211 1222233333332 22333489999999999998777898884
No 283
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=49.45 E-value=64 Score=36.66 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=47.8
Q ss_pred ccEEEehh--hhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCC--CCCCCC-ChhhhhHHcCCCCeEEEeeCCHHHHH-
Q 005021 484 IPYCATFF--VFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGE--DGPTHQ-PIEHLASFRAMPNILMLRPADGNETA- 556 (719)
Q Consensus 484 ~Pv~~~y~--~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~--dG~THq-~~edia~lr~iPnl~V~~P~d~~e~~- 556 (719)
.++++++. .|.+ ..++.+..++..++||+|++-+.++++|. .-.|.. .+...+---.+|++.|= =.|..++.
T Consensus 224 ~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VD-G~D~~av~~ 302 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVD-GMDVLKVRE 302 (433)
T ss_pred CEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEEC-CCCHHHHHH
Confidence 34555443 3332 23566777789999999999777654332 001111 13333333467777652 22333333
Q ss_pred ---HHHHHHHHcCCCcEEEEE
Q 005021 557 ---GAYKVAVANRKRPSILAL 574 (719)
Q Consensus 557 ---~~l~~a~~~~~~P~~irl 574 (719)
.+++.+.. .++|++|-.
T Consensus 303 a~~~A~~~Ar~-g~gP~LIe~ 322 (433)
T PLN02374 303 VAKEAIERARR-GEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHH-cCCCEEEEE
Confidence 34444443 478998864
No 284
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=47.55 E-value=79 Score=40.40 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=79.1
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCC--
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ-- 530 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq-- 530 (719)
+|.|..++-++=..-++.+.|++.... -++++.. -+||.--....|++.-+.+.++++++-..+...-..|-.|-
T Consensus 459 ~~~~~~~~~~~MG~~g~~~~G~a~~~~-~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~ 537 (1159)
T PRK13030 459 WMDRDTTGLTQMGGEGVDWIGHAPFTE-TKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVAMTGGQPVDGS 537 (1159)
T ss_pred ccccccceeeccCccchhhceeccccC-CCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCC
Confidence 356777776666667778888887643 3666653 68898888889999999999999888666665433343442
Q ss_pred -ChhhhhH---HcCCCCeEEE--eeCC-----HH--------HHHHHHHHHHHcCCCcEEEEE
Q 005021 531 -PIEHLAS---FRAMPNILML--RPAD-----GN--------ETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 531 -~~edia~---lr~iPnl~V~--~P~d-----~~--------e~~~~l~~a~~~~~~P~~irl 574 (719)
.+++|.- --.+..+.|+ -|.+ -. +....++.+++..++|++|++
T Consensus 538 i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 538 ISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIY 600 (1159)
T ss_pred CCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 3454322 3355566776 5554 11 445566777755789999886
No 285
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=44.98 E-value=43 Score=38.78 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 205 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 205 ls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
+|.|+|++.|.. ..++.++||=++=--+. +|-+......+=.||++|||+=+|-.
T Consensus 428 vSTA~Gi~~a~~---------------~ptv~liGDLS~lhD~N--gLl~~k~~~~~ltIvv~NNnGGgIF~ 482 (566)
T COG1165 428 VSTALGIARATQ---------------KPTVALIGDLSFLHDLN--GLLLLKKVPQPLTIVVVNNNGGGIFS 482 (566)
T ss_pred HHHHhhhhhhcC---------------CceEEEEechhhhhccc--hHhhcCCCCCCeEEEEEeCCCceeee
Confidence 678889988642 34999999988744332 33345556555567888888877653
No 286
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=42.70 E-value=99 Score=25.98 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=37.8
Q ss_pred CEEEEEeCHh-HHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccc
Q 005021 607 DVILIGTGSE-LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 670 (719)
Q Consensus 607 dvtIva~G~~-v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~ 670 (719)
++.|+..+.. ...|++.++.|++.|+++++ |.+. +.+..+... ..+.+.+.++++.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~----a~~~g~~~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIRE----AQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHH----HHHcCCCEEEEECcc
Confidence 6777777654 46899999999999999977 4444 466655332 122344445666544
No 287
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=39.71 E-value=3.1e+02 Score=30.70 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=32.6
Q ss_pred hHHHHHHHHhhhcC-CEEEEEecCCCccCCCCCCCC---Chhhhh-HHcCCCCeEEEee
Q 005021 496 YMRAAIRISALCEA-GVIYVMTHDSIGLGEDGPTHQ---PIEHLA-SFRAMPNILMLRP 549 (719)
Q Consensus 496 ra~dqir~~a~~~~-pV~~v~~~~g~g~g~dG~THq---~~edia-~lr~iPnl~V~~P 549 (719)
..|+.+...+-.++ +++++. |.-...-||+|-- ..++++ -|+++ |..|+.-
T Consensus 163 ~vwEA~~~Ag~~kL~NLivIv--D~N~~qidG~t~~v~~~~e~l~~kf~Af-GW~vi~V 218 (386)
T cd02017 163 ESLGAIGLAAREKLDNLIFVV--NCNLQRLDGPVRGNGKIIQELEGIFRGA-GWNVIKV 218 (386)
T ss_pred HHHHHHHHHHHhCCCCEEEEE--ECCCCccCCcccccccCchhHHHHHHhc-CCEEEEE
Confidence 57888877777775 566666 4444456777753 355555 56666 7777764
No 288
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=38.57 E-value=77 Score=31.24 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCC---CCccccccccEEEecCC-----CCCCCCEEEEEeCHhHHHHHHHH
Q 005021 553 NETAGAYKVAVANRKRPSILALSRQKLPHLAG---TSIDGVEKGAYIISDNS-----SGNKPDVILIGTGSELEIAAKAA 624 (719)
Q Consensus 553 ~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~---~~~~~~~~G~~~i~~~~-----~~~g~dvtIva~G~~v~~al~Aa 624 (719)
+|++++|..|+- .+|-+||.-- +.+..+.. .+.++++.-+ .+.... .+.-..|.|++-.+.=.+|.+.|
T Consensus 25 edaARlLAQA~v-geG~IYi~G~-~Em~~v~~~Al~g~E~l~~~k-~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 25 EDAARLLAQAIV-GEGTIYIYGF-GEMEAVEAEALYGAEPLPSAK-RLSEDLENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HHHHHHHHHHHH-TT--EEEEE--GGGGGGHHHHHCSTT--TTEE-E--TT--------TT-EEEEEES-S--HHHHHHH
T ss_pred HHHHHHHHHHHh-cCCEEEEEec-ChHHHHHHHHHcCCCCCchhh-cCcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 678889998886 5888998632 23322111 0122222211 111100 00135699999999888999999
Q ss_pred HHHHhCCCcEEEEe
Q 005021 625 EELRKGGKAVRVVS 638 (719)
Q Consensus 625 ~~L~~~Gi~v~VId 638 (719)
++|.++|+.+-+|+
T Consensus 102 ~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 102 KQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHT--EEEEE
T ss_pred HHHHHCCCCEEEEE
Confidence 99999999999998
No 289
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=36.48 E-value=27 Score=31.61 Aligned_cols=36 Identities=39% Similarity=0.585 Sum_probs=24.5
Q ss_pred CCCEEEEEeCHhHH-HHHHHHHHHHhCCCcEEEEecC
Q 005021 605 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 605 g~dvtIva~G~~v~-~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
.+|++||+||.... .--+..+.|++.||.+++-|-+
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 68999999998653 3445567788899999888643
No 290
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=36.32 E-value=68 Score=35.13 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=46.6
Q ss_pred hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCCC-hhhhh-HHcCCCCeEEEee---CCHHHHHHHHHHHHHcCCCc
Q 005021 496 YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQP-IEHLA-SFRAMPNILMLRP---ADGNETAGAYKVAVANRKRP 569 (719)
Q Consensus 496 ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq~-~edia-~lr~iPnl~V~~P---~d~~e~~~~l~~a~~~~~~P 569 (719)
..|+.+..++..++. ++++. |.-+..-||.|--. .+|+. -|+++ |..|+.- -|.+++..++..|-...++|
T Consensus 159 ~~~EA~~~A~~~~L~nLi~i~--D~N~~q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP 235 (332)
T PF00456_consen 159 SVWEAASLAGHYKLDNLIVIY--DSNGIQIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKP 235 (332)
T ss_dssp HHHHHHHHHHHTT-TTEEEEE--EEESEETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-
T ss_pred hhHHHHHHHHHhCCCCEEEEE--ecCCcccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCC
Confidence 567777777777776 55555 44445668877532 23433 46665 8888887 45566666666676545899
Q ss_pred EEEEE
Q 005021 570 SILAL 574 (719)
Q Consensus 570 ~~irl 574 (719)
++|..
T Consensus 236 ~~Ii~ 240 (332)
T PF00456_consen 236 TVIIA 240 (332)
T ss_dssp EEEEE
T ss_pred ceeec
Confidence 99986
No 291
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=35.37 E-value=1.6e+02 Score=37.62 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=79.3
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC---
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--- 529 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH--- 529 (719)
+|+|..++-++=..-++...|++.... -++++.. -+||.--....||+.-+.+.++++++-..+...-..|-.|
T Consensus 486 ~~~~~~~~~~~MGgeg~~~~G~a~f~~-~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~ 564 (1186)
T PRK13029 486 WMDRSTEGFSQMGGEGVAWIGQMPFSR-RRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGV 564 (1186)
T ss_pred ccccccceeeccCcchhhheeecccCC-CCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCc
Confidence 456777766666666667778776532 2455543 6888888888999999999998888866665533333333
Q ss_pred CChhhhh-HHc--CCCCeEEEe--eCCHH--------------HHHHHHHHHHHcCCCcEEEEEc
Q 005021 530 QPIEHLA-SFR--AMPNILMLR--PADGN--------------ETAGAYKVAVANRKRPSILALS 575 (719)
Q Consensus 530 q~~edia-~lr--~iPnl~V~~--P~d~~--------------e~~~~l~~a~~~~~~P~~irl~ 575 (719)
-.+++|+ .++ .+-.+.|+. |.+-. +....++..++..+++++|++.
T Consensus 565 ~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~ 629 (1186)
T PRK13029 565 LTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYD 629 (1186)
T ss_pred CCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 3455544 333 455677777 76554 5556667777557899999873
No 292
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=35.15 E-value=1.1e+02 Score=33.23 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=55.2
Q ss_pred cchHHHHHHHHHhc--CCCCccEEE-ehhhhHH---hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCC-Chhhhh-H
Q 005021 466 EHGMGAICNGIALH--SPGLIPYCA-TFFVFTD---YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ-PIEHLA-S 537 (719)
Q Consensus 466 E~~~vg~AaGlA~~--G~~~~Pv~~-~y~~F~~---ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq-~~edia-~ 537 (719)
+|-=+|...++|.. +. .-+|. .|.+=.. ..|+.+.+++++++||+||+-+..+|. |.+|. +..+-. +
T Consensus 169 AQiPLGaGia~A~kY~~~--~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGM---GTs~~Rasa~teyy 243 (394)
T KOG0225|consen 169 AQIPLGAGIAFAQKYNRE--DAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGM---GTSAERASASTEYY 243 (394)
T ss_pred cCCCccccHHHHHHhccC--CceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCcc---CcchhhhhcChHHH
Confidence 34444444455543 32 23443 3444331 456666677999999999996666543 33332 222222 3
Q ss_pred Hc--CCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEE
Q 005021 538 FR--AMPNILMLRPADGNETAGAYKVAVAN---RKRPSILAL 574 (719)
Q Consensus 538 lr--~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl 574 (719)
.| -|||+.| -=-|.--++.+.++|.+. -++|.++-+
T Consensus 244 kRG~yiPGl~V-dGmdvlaVr~a~KfA~~~~~~g~GPilmE~ 284 (394)
T KOG0225|consen 244 KRGDYIPGLKV-DGMDVLAVREATKFAKKYALEGKGPILMEM 284 (394)
T ss_pred hccCCCCceEE-CCcchhhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 33 5899875 222333344455555432 378988854
No 293
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=35.12 E-value=1.3e+02 Score=25.77 Aligned_cols=41 Identities=34% Similarity=0.449 Sum_probs=31.7
Q ss_pred CEEEEEeCH---h-HHHHHHHHHHHHhCCCcEEEEecCChhhHHHHH
Q 005021 607 DVILIGTGS---E-LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS 649 (719)
Q Consensus 607 dvtIva~G~---~-v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~ 649 (719)
+|.|+..|. . ...|.+.++.|++.|+++.+-+ .-..+..+.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~ 45 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQI 45 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHHH
Confidence 478888888 4 4689999999999999988887 445555553
No 294
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.36 E-value=1.4e+02 Score=27.13 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=37.9
Q ss_pred CCEEEEEeC--Hh-HHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccc
Q 005021 606 PDVILIGTG--SE-LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 670 (719)
Q Consensus 606 ~dvtIva~G--~~-v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~ 670 (719)
.++.|++.+ .. ...|++.++.|++.|+.+++- .. +.+..+... ..+.+.+.++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d-~~--~sl~kqlk~----A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYD-DS--GSIGRRYAR----QDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEe-CC--CCHHHHHHH----hHhcCCCEEEEECcC
Confidence 578899988 54 468999999999999998884 33 566655322 122344444555443
No 295
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=34.13 E-value=63 Score=31.36 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=29.0
Q ss_pred CCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEE
Q 005021 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVV 637 (719)
Q Consensus 605 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VI 637 (719)
+.+++++++|-.+...+..|+.|++.|.+|.+=
T Consensus 57 ~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~q 89 (155)
T PF12500_consen 57 GERVLVLGTGEFMYLPLLLAEELEQAGADVRYQ 89 (155)
T ss_pred CCcEEEEccchHHHHHHHHHHHHHhcCCceEEe
Confidence 578999999999999999999999999766554
No 296
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=34.11 E-value=2.1e+02 Score=34.58 Aligned_cols=104 Identities=14% Similarity=0.228 Sum_probs=61.8
Q ss_pred HHHHHHHHhc----CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCC-cc---CCCCCCC--CCh-----
Q 005021 470 GAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSI-GL---GEDGPTH--QPI----- 532 (719)
Q Consensus 470 vg~AaGlA~~----G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~-g~---g~dG~TH--q~~----- 532 (719)
+++|.|||+. |.+-+.|+.+ -..+-. .+|+.+..++..++|+++++...+. +. +-||.+. -++
T Consensus 150 ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~ 229 (677)
T PLN02582 150 ISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALS 229 (677)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHH
Confidence 4667777653 4322344333 333433 6789988887778999999977655 22 2333332 223
Q ss_pred --------------------------hhh-----------------hHHcCCCCeEEEeeCCHHHHHHHHHHHH--HcC-
Q 005021 533 --------------------------EHL-----------------ASFRAMPNILMLRPADGNETAGAYKVAV--ANR- 566 (719)
Q Consensus 533 --------------------------edi-----------------a~lr~iPnl~V~~P~d~~e~~~~l~~a~--~~~- 566 (719)
+++ .+|..+ |+..+-|.|+.|+..+.+..- ++.
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~-G~~y~g~iDGHd~~~L~~al~~~k~~~ 308 (677)
T PLN02582 230 RLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL-GLYYIGPVDGHNIDDLVTILREVKSTK 308 (677)
T ss_pred HHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHc-CCeEEeeeCCCCHHHHHHHHHHHHhcC
Confidence 111 234444 678888999998887765322 222
Q ss_pred -CCcEEEEE
Q 005021 567 -KRPSILAL 574 (719)
Q Consensus 567 -~~P~~irl 574 (719)
++|++|..
T Consensus 309 ~~~P~vihv 317 (677)
T PLN02582 309 TTGPVLIHV 317 (677)
T ss_pred CCCCEEEEE
Confidence 58999876
No 297
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=32.81 E-value=2e+02 Score=36.83 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=76.1
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCC-
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQP- 531 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~- 531 (719)
+++|.-++-++=..-++.+.|+|.... -++++.. -+||.--....||+.-+.+.++++++-..+...-..|-.|-+
T Consensus 472 ~~p~~~~~~~~MG~eg~~~~G~a~f~~-~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~ 550 (1165)
T PRK09193 472 WMDRNTSTFTQMGGEGVPWIGQAPFTD-EKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGG 550 (1165)
T ss_pred CCCCCCCeeeccCCcchhhceeccccC-CCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCC
Confidence 344544666655566677788887632 2566643 688888888899999999999888886666543323333322
Q ss_pred --hhhh-hHHc--CCCCeEEE--eeCCHHHH--------------HHHHHHHHHcCCCcEEEEE
Q 005021 532 --IEHL-ASFR--AMPNILML--RPADGNET--------------AGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 532 --~edi-a~lr--~iPnl~V~--~P~d~~e~--------------~~~l~~a~~~~~~P~~irl 574 (719)
..+| ..++ .+-.+.|+ -|.+-... ...++.+++..+|+++|++
T Consensus 551 ~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 551 LSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred cchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 2222 2222 45556677 66665544 5566777755789999886
No 298
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=31.10 E-value=82 Score=30.76 Aligned_cols=44 Identities=27% Similarity=0.205 Sum_probs=32.8
Q ss_pred CCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHH
Q 005021 606 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS 649 (719)
Q Consensus 606 ~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~ 649 (719)
.=++|++.|+.-..++.+|..|.+.|++|.|+-+...+.+..+.
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~ 70 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDA 70 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHH
Confidence 34677888888899999999999999999996554444444443
No 299
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=30.99 E-value=2.1e+02 Score=33.33 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEE--ehhh
Q 005021 415 SQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFV 492 (719)
Q Consensus 415 ~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~ 492 (719)
..-.+.+|.+..=+=+++++-.-++-.+. .|. ++++=-..+=|-|-.+.=+|-|+|+.-+ +||+. |-.+
T Consensus 11 a~v~~eeL~r~GV~~vvicPGSRSTPLal-----a~~--~~~~i~~hv~~DERsagFfALGlAKas~--rPVavi~TSGT 81 (566)
T COG1165 11 ARVFLEELARLGVRDVVICPGSRSTPLAL-----AAA--AHDAITVHVHIDERSAGFFALGLAKASK--RPVAVICTSGT 81 (566)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCcHHHH-----HHH--hcCCeEEEEecccchHHHHHHhhhhhcC--CCEEEEEcCcc
Confidence 34445566665566678888643322211 132 4555455677999999999999999875 89884 4455
Q ss_pred hHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhhhhHHcCCCCeEE--EeeCCHHHHHHHHHHHH----H-
Q 005021 493 FTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEHLASFRAMPNILM--LRPADGNETAGAYKVAV----A- 564 (719)
Q Consensus 493 F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~edia~lr~iPnl~V--~~P~d~~e~~~~l~~a~----~- 564 (719)
-....|+.|-.+.+...|.++.. .|+-- +-+-| .-|.+++..+|.+-|+..+ -.|.+..++.+.+++.. .
T Consensus 82 A~ANl~PAViEA~~srvpLIVLT-ADRP~EL~~~G-AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~ 159 (566)
T COG1165 82 AVANLYPAVIEANLSRVPLIVLT-ADRPPELRGCG-ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQ 159 (566)
T ss_pred hhhhccHHHHhhhhcCCceEEEe-CCCCHHHhcCC-CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 55567888888899999988764 56654 33234 3588999999999998644 45777777666554332 1
Q ss_pred ---cCCCcEEEEEc
Q 005021 565 ---NRKRPSILALS 575 (719)
Q Consensus 565 ---~~~~P~~irl~ 575 (719)
...||+=|-+|
T Consensus 160 a~~~~~GpVHiN~P 173 (566)
T COG1165 160 ARTPHAGPVHINVP 173 (566)
T ss_pred ccCCCCCceEecCC
Confidence 24578777554
No 300
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=30.31 E-value=1.2e+02 Score=35.79 Aligned_cols=74 Identities=24% Similarity=0.294 Sum_probs=48.2
Q ss_pred HHHHHHhhhcCCEEEEEecCCCccCCCCCCCC-ChhhhhH-HcCCCCeEEEeeCC---HHHHHHHHHHHHHcCCCcEEEE
Q 005021 499 AAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ-PIEHLAS-FRAMPNILMLRPAD---GNETAGAYKVAVANRKRPSILA 573 (719)
Q Consensus 499 dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq-~~edia~-lr~iPnl~V~~P~d---~~e~~~~l~~a~~~~~~P~~ir 573 (719)
+....++..++.=.+++ +|.-...-||.|.. ..||+.- |.+ -|..|+.-.| .++...+++.|....++|++|.
T Consensus 167 EA~slAG~l~L~kLIvl-yD~N~IsiDG~~~~~f~ed~~~RfeA-yGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~ 244 (663)
T COG0021 167 EAASLAGHLKLGKLIVL-YDSNDISIDGDTSLSFTEDVAKRFEA-YGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLII 244 (663)
T ss_pred HHHHHHhhcCCCcEEEE-EeCCCceeccCcccccchhHHHHHHh-cCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 34444455566644444 35555677999985 4576653 333 3777775555 6677778888887678999997
Q ss_pred E
Q 005021 574 L 574 (719)
Q Consensus 574 l 574 (719)
.
T Consensus 245 ~ 245 (663)
T COG0021 245 V 245 (663)
T ss_pred E
Confidence 5
No 301
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=30.07 E-value=1.7e+02 Score=29.28 Aligned_cols=34 Identities=6% Similarity=-0.074 Sum_probs=25.4
Q ss_pred cEEEEEEccc-ccChhHHHHHHHHhhhcCCCcEEEE
Q 005021 232 HYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAF 266 (719)
Q Consensus 232 ~~v~~iiGDG-~~~eG~~~EAln~A~~~~L~nli~i 266 (719)
.++++++|++ +..+|..+++...+...+.. +-+|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~-v~vI 142 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVS-VDII 142 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCe-EEEE
Confidence 4667777776 99999999998888887763 4443
No 302
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=29.45 E-value=88 Score=26.03 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=29.3
Q ss_pred EEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCC--hhhHHHHH
Q 005021 608 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS--WELFDEQS 649 (719)
Q Consensus 608 vtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~--l~pld~~~ 649 (719)
++||+.|. .+++.|..|.+.|.++.+|+... +.-+|.+.
T Consensus 2 vvViGgG~---ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~ 42 (80)
T PF00070_consen 2 VVVIGGGF---IGIELAEALAELGKEVTLIERSDRLLPGFDPDA 42 (80)
T ss_dssp EEEESSSH---HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHH
T ss_pred EEEECcCH---HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHH
Confidence 67888887 67788888888999999998775 22345554
No 303
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=29.44 E-value=78 Score=27.30 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=31.6
Q ss_pred CCCEEEEEeC----HhHHHHHHHHHHHHhCCCcEEEEecCC
Q 005021 605 KPDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 641 (719)
Q Consensus 605 g~dvtIva~G----~~v~~al~Aa~~L~~~Gi~v~VId~~~ 641 (719)
..+|+|++.| +....|.+|.+.|.+.|+..+.+|+..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~ 47 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE 47 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC
Confidence 3689999988 466789999999999999999999864
No 304
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=28.89 E-value=2.4e+02 Score=22.84 Aligned_cols=66 Identities=11% Similarity=-0.001 Sum_probs=40.3
Q ss_pred CEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchh
Q 005021 607 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEK 677 (719)
Q Consensus 607 dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~ 677 (719)
+|+|.+.- ....|.+|.+.|++.|+..+.+|+..-.+...+.... .-....+. |.+.+....|+..
T Consensus 2 ~v~ly~~~-~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~---~g~~~vP~-v~i~~~~iGg~~~ 67 (73)
T cd03027 2 RVTIYSRL-GCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEER---TGSSVVPQ-IFFNEKLVGGLTD 67 (73)
T ss_pred EEEEEecC-CChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHH---hCCCCcCE-EEECCEEEeCHHH
Confidence 46666654 3466889999999999999999998655444332221 11123343 5555555555533
No 305
>PRK10329 glutaredoxin-like protein; Provisional
Probab=28.88 E-value=2.1e+02 Score=24.22 Aligned_cols=33 Identities=3% Similarity=0.102 Sum_probs=25.9
Q ss_pred EEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCC
Q 005021 608 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS 641 (719)
Q Consensus 608 vtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~ 641 (719)
|+|.+. .....|..+.+.|++.||..+.||+..
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR 35 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC
Confidence 555554 344678888889999999999999985
No 306
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=28.69 E-value=1.1e+02 Score=27.94 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=27.3
Q ss_pred EEEEEeCH--hHHHHHHHHHHHHhCCCcEEEEecCChhhH
Q 005021 608 VILIGTGS--ELEIAAKAAEELRKGGKAVRVVSFVSWELF 645 (719)
Q Consensus 608 vtIva~G~--~v~~al~Aa~~L~~~Gi~v~VId~~~l~pl 645 (719)
|+|++.|+ -+...+..++.|+++|.+|.+......++.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~ 40 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRER 40 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceec
Confidence 46677776 456788889999999999998776655543
No 307
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=28.65 E-value=3.8e+02 Score=32.22 Aligned_cols=106 Identities=14% Similarity=0.175 Sum_probs=64.5
Q ss_pred hHHHHHHHHHh----cCCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCcc----CCCCCCC--CCh---
Q 005021 468 GMGAICNGIAL----HSPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGL----GEDGPTH--QPI--- 532 (719)
Q Consensus 468 ~~vg~AaGlA~----~G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~----g~dG~TH--q~~--- 532 (719)
+-+++|.|||+ .|...+.||.+ -..+-. .+|+.+.+++..+-++++|....+... ..||+|- -++
T Consensus 181 ~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~ 260 (641)
T PLN02234 181 TTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCA 260 (641)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHH
Confidence 44556777765 34323445543 333332 689998888877788888886555521 3567664 122
Q ss_pred ------------hh-hhHHcCCCCeEEEeeCCHHHHHHHHHHHH--HcC--CCcEEEEE
Q 005021 533 ------------EH-LASFRAMPNILMLRPADGNETAGAYKVAV--ANR--KRPSILAL 574 (719)
Q Consensus 533 ------------ed-ia~lr~iPnl~V~~P~d~~e~~~~l~~a~--~~~--~~P~~irl 574 (719)
++ -..|+.+ |+.++-|.|++++..+.+..- +.. ++|++|..
T Consensus 261 l~~l~~~~~~~~~~~~~~fe~f-G~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~ 318 (641)
T PLN02234 261 LSRLQSNCGMIRETSSTLFEEL-GFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHV 318 (641)
T ss_pred HHHhhcccccccCCHHHHHHHc-CCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 11 1366676 889888999988876654321 122 47998875
No 308
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=27.93 E-value=2.8e+02 Score=29.45 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=56.4
Q ss_pred hhhH-H-hHHHHHHHHhhhcCC---EEEEEecCCCccCC---CCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHH
Q 005021 491 FVFT-D-YMRAAIRISALCEAG---VIYVMTHDSIGLGE---DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVA 562 (719)
Q Consensus 491 ~~F~-~-ra~dqir~~a~~~~p---V~~v~~~~g~g~g~---dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a 562 (719)
.+|. | -.++.+..+++.++| +++++-+.+++.+. +..+-..+.|.+-.-.+|.+.| -=-|..++..+++.|
T Consensus 150 gA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~V-dG~D~~aV~~a~~~A 228 (265)
T cd02016 150 AAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHV-NGDDPEAVVRATRLA 228 (265)
T ss_pred ccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEE-cCCCHHHHHHHHHHH
Confidence 4565 4 457777778899998 99999888887532 2222233567776668888865 555677777777777
Q ss_pred HHc---CCCcEEEEE
Q 005021 563 VAN---RKRPSILAL 574 (719)
Q Consensus 563 ~~~---~~~P~~irl 574 (719)
++. -++|++|-+
T Consensus 229 ~~~~r~g~gp~lIe~ 243 (265)
T cd02016 229 LEYRQKFKKDVVIDL 243 (265)
T ss_pred HHHHHhcCCCEEEEE
Confidence 643 368998865
No 309
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.89 E-value=1.1e+02 Score=25.23 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=26.5
Q ss_pred CCEEEEEeCHh-HHHHHHHHHHHHhCCCcEEEEe
Q 005021 606 PDVILIGTGSE-LEIAAKAAEELRKGGKAVRVVS 638 (719)
Q Consensus 606 ~dvtIva~G~~-v~~al~Aa~~L~~~Gi~v~VId 638 (719)
.++.|+..+.. ...|++.+..|++.|+.+++..
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~ 35 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDY 35 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEec
Confidence 36888888874 4689999999999999887754
No 310
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=26.95 E-value=49 Score=30.36 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=26.8
Q ss_pred CCCEEEEEeCHhH-HHHHHHHHHHHhCCCcEEEEecC
Q 005021 605 KPDVILIGTGSEL-EIAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 605 g~dvtIva~G~~v-~~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
..+++||++|... ..--+..+.|++.||.++|.|-.
T Consensus 54 ~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 54 RPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred CCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 5789999999854 23334556788899999998743
No 311
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=26.56 E-value=3.1e+02 Score=24.13 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=29.3
Q ss_pred CCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCC
Q 005021 606 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS 641 (719)
Q Consensus 606 ~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~ 641 (719)
.+|+|.+. +....|.+|.+.|.+.|+..+++|+-.
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~ 42 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK 42 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC
Confidence 57888887 456779999999999999999999874
No 312
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=24.52 E-value=5.5e+02 Score=23.47 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=47.1
Q ss_pred EEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC-CCCccccc---cccEEEecCCCCCCCCEEEEEeCHhHHHH
Q 005021 545 LMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA-GTSIDGVE---KGAYIISDNSSGNKPDVILIGTGSELEIA 620 (719)
Q Consensus 545 ~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~-~~~~~~~~---~G~~~i~~~~~~~g~dvtIva~G~~v~~a 620 (719)
.|+.|.+.+|+..++++|.+ .+.|+.+|=......... ....-.+. +.+..-.+. ....+.+..|......
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~~~~~ivi~~~~l~~i~~id~----~~~~v~v~aG~~~~~l 77 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSSDEGGIVIDMSRLNKIIEIDP----ENGTVTVGAGVTWGDL 77 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTSSTTEEEEECTTCGCEEEEET----TTTEEEEETTSBHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcccccccCCcEEEeeccccccccccc----cceeEEEeccccchhc
Confidence 58999999999999999997 588888875443332111 01111111 122122222 3567788888887765
Q ss_pred HHHHHHHHhCC
Q 005021 621 AKAAEELRKGG 631 (719)
Q Consensus 621 l~Aa~~L~~~G 631 (719)
.+ .|+++|
T Consensus 78 ~~---~l~~~g 85 (139)
T PF01565_consen 78 YE---ALAPRG 85 (139)
T ss_dssp HH---HHHHHT
T ss_pred cc---cccccc
Confidence 54 354444
No 313
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=23.96 E-value=1.1e+02 Score=26.99 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=31.4
Q ss_pred CCCEEEEEeC----HhHHHHHHHHHHHHhCCCcEEEEecCC
Q 005021 605 KPDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 641 (719)
Q Consensus 605 g~dvtIva~G----~~v~~al~Aa~~L~~~Gi~v~VId~~~ 641 (719)
..+|+|++.| +....|.+|.+.|.+.|++.+.+|+..
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~ 51 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE 51 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC
Confidence 3689999888 466788999999999999999999854
No 314
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=23.67 E-value=53 Score=29.75 Aligned_cols=35 Identities=40% Similarity=0.657 Sum_probs=26.1
Q ss_pred CCEEEEEeCHhHH-HHHHHHHHHHhCCCcEEEEecC
Q 005021 606 PDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 606 ~dvtIva~G~~v~-~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
.+++||+||.... .--+..+.|++.||.+++-|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 7899999998542 2334557788899999988644
No 315
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=22.84 E-value=1.1e+02 Score=32.71 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=25.0
Q ss_pred CCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEec
Q 005021 606 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 639 (719)
Q Consensus 606 ~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~ 639 (719)
++|+||+.|. --+.+|..|+++|++|+|++=
T Consensus 2 ~siaIVGaGi---AGl~aA~~L~~aG~~vtV~eK 32 (331)
T COG3380 2 PSIAIVGAGI---AGLAAAYALREAGREVTVFEK 32 (331)
T ss_pred CcEEEEccch---HHHHHHHHHHhcCcEEEEEEc
Confidence 4699999997 345577889999999999973
No 316
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=22.46 E-value=91 Score=34.54 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=26.9
Q ss_pred cEEEEEEcccc-cChhHHHHHHHHhhhcCCCcEEEEEeCCC
Q 005021 232 HYTYVILGDGC-QMEGIANEASSLAGHLGLGKLIAFYDDNH 271 (719)
Q Consensus 232 ~~v~~iiGDG~-~~eG~~~EAln~A~~~~L~nli~ivddN~ 271 (719)
..||++.|||. ..-|. .++.+|...+. |+++|+=||+
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~-ni~~iv~DNe 189 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGE-NVNILVLDTE 189 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCC-CeEEEEECCc
Confidence 58999999994 45554 45666777774 6888777776
No 317
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=22.22 E-value=71 Score=28.99 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=26.0
Q ss_pred CCCEEEEEeCHhHH-HHHHHHHHHHhCCCcEEEEecC
Q 005021 605 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 605 g~dvtIva~G~~v~-~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
.++++||+||.... .--++.+.|++.||.+++-|-.
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 52 QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 47899999998542 2334456788899998887643
No 318
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=21.43 E-value=8.2e+02 Score=25.44 Aligned_cols=101 Identities=24% Similarity=0.245 Sum_probs=56.4
Q ss_pred HHHHHHHh----cCCCCccEEEehhhhHH--hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCC--CChhhhh-HHcC
Q 005021 471 AICNGIAL----HSPGLIPYCATFFVFTD--YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH--QPIEHLA-SFRA 540 (719)
Q Consensus 471 g~AaGlA~----~G~~~~Pv~~~y~~F~~--ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~TH--q~~edia-~lr~ 540 (719)
++|+|||+ .|..++.||.+=--=++ ..|+.+..++-.++. ++.++ |.-..--||.|- .+.+|+. -+++
T Consensus 126 svavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaiv--D~N~~QldG~t~~i~~~~pL~~k~eA 203 (243)
T COG3959 126 SVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIV--DRNKLQLDGETEEIMPKEPLADKWEA 203 (243)
T ss_pred hHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEE--ecCCcccCCchhhccCcchhHHHHHh
Confidence 45566665 45334444443111123 567776666666665 44444 666666788875 4556654 3444
Q ss_pred CCCeEEEee--CCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 541 MPNILMLRP--ADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 541 iPnl~V~~P--~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+ |+.|..- .|-+|+..++..+....++|.+|+.
T Consensus 204 F-Gw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa 238 (243)
T COG3959 204 F-GWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIA 238 (243)
T ss_pred c-CceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEE
Confidence 3 5666543 3455666666666543348988875
No 319
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=21.23 E-value=62 Score=35.00 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=44.6
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
..|++|--|+.|+|.-.|. ....++++-||-.++ -..|-|...+.++|+ .|-++-||-|
T Consensus 417 qagplgwtipaalgv~~ad--------------p~r~vvalsgdydfq--fmieelavgaq~k~p-yihv~vnnay 475 (592)
T COG3960 417 QAGPLGWTIPAALGVCAAD--------------PKRNVVAISGDYDFQ--FLIEELAVGAQFKIP-YIHVLVNNAY 475 (592)
T ss_pred ccCCcccccchhhceeecC--------------CCCceEEeecCchHH--HHHHHHhhhhcccCc-eEEEEecchH
Confidence 4788888999988876542 256799999999886 467889999999997 5555555543
No 320
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=21.07 E-value=4.3e+02 Score=21.11 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=38.0
Q ss_pred EEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccC-CCceEEEEccccccCchh
Q 005021 608 VILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA-AVSARVSIEAGSTFGWEK 677 (719)
Q Consensus 608 vtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~-~~~~vvvvE~~~~~G~~~ 677 (719)
|+|.+. +....|.+|.+.|++.|+..+.+|+..-...-.+... ..-.. ..+. |+++.....|+..
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~---~~~~~~~vP~-v~i~g~~igg~~~ 67 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMIN---RSGGRRTVPQ-IFIGDVHIGGCDD 67 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHH---HhCCCCccCE-EEECCEEEeChHH
Confidence 444443 4457788899999999999999999764222221111 11111 3453 6666665555543
No 321
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.83 E-value=1.4e+02 Score=25.27 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=28.5
Q ss_pred CEEEEEeCH----hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHH
Q 005021 607 DVILIGTGS----ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQ 648 (719)
Q Consensus 607 dvtIva~G~----~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~ 648 (719)
+++|+..+. ....|++.++.|++.|+++++ |.+. +.+..+
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~ 46 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVK 46 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccc
Confidence 477777665 457899999999999999987 4443 344443
No 322
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=20.46 E-value=4.1e+02 Score=25.35 Aligned_cols=51 Identities=16% Similarity=0.029 Sum_probs=30.8
Q ss_pred hhHHHHHHH-HhhhcCCCcEEEEEeCCCCCc--ccchhhhcchhHHHHHhcc-CceEE
Q 005021 245 EGIANEASS-LAGHLGLGKLIAFYDDNHISI--DGDTEIAFTENVDKRFEGL-GWHVI 298 (719)
Q Consensus 245 eG~~~EAln-~A~~~~L~nli~ivddN~~si--s~~~~~~~~~~~~~~~~a~-G~~~~ 298 (719)
-..+++.+. .++..++ |++++....+++. ++++.. ..+-...++.+ |+.++
T Consensus 74 ~~ra~dqi~~~~a~~~~-pv~~~~~~~g~~~~~~G~tH~--~~~~~a~~~~iPg~~v~ 128 (156)
T cd07033 74 LQRAYDQIRHDVALQNL-PVKFVGTHAGISVGEDGPTHQ--GIEDIALLRAIPNMTVL 128 (156)
T ss_pred HHHHHHHHHHHHhccCC-CeEEEEECCcEecCCCCcccc--hHHHHHHhcCCCCCEEE
Confidence 467888877 8888887 5888888766654 444321 11223345544 55544
No 323
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=20.36 E-value=3.8e+02 Score=30.78 Aligned_cols=169 Identities=19% Similarity=0.156 Sum_probs=85.5
Q ss_pred cccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHh---hhcCCEEEEEecCCCccCCCCCCCCChhhhhHH
Q 005021 462 FGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISA---LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 538 (719)
Q Consensus 462 ~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a---~~~~pV~~v~~~~g~g~g~dG~THq~~edia~l 538 (719)
-|=.||+|+-.|.+.|+.-.+-+-+.++ ++--.-+.+.+--.+ -.++||.|+= .|-+..-.--|.=|.+||..-.
T Consensus 61 qg~NEQgMAhaAiayaKq~~Rrr~~A~t-sSiGPGA~NmvTaAalA~~NrlPvLllP-gDvfA~R~PDPVLQQ~E~~~d~ 138 (617)
T COG3962 61 QGHNEQGMAHAAIAYAKQHRRRRIYAVT-SSIGPGAANMVTAAALAHVNRLPVLLLP-GDVFATRQPDPVLQQLEQFGDG 138 (617)
T ss_pred hcccHhHHHHHHHHHHHHHhhceeeEEe-cccCCcHHHHHHHHHHHHhhcCceEeec-cchhcccCCChHHHhhhccccC
Confidence 4568999999999999876412333333 111122333333233 3789999874 3333322223444556664422
Q ss_pred cCCCCeEEEeeC--------CHHHHHHHHHHHHHc-----CCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCC---
Q 005021 539 RAMPNILMLRPA--------DGNETAGAYKVAVAN-----RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSS--- 602 (719)
Q Consensus 539 r~iPnl~V~~P~--------d~~e~~~~l~~a~~~-----~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~--- 602 (719)
..--| .-+.|- -++++-.+|..|++- .-||+-|.++-.---..++=+...|..--++++|...
T Consensus 139 ~it~N-DcfrPVSRYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dyp~~FF~~rv~~~rR~~Pd~~ 217 (617)
T COG3962 139 TITTN-DCFRPVSRYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQDVQAEAYDYPESFFEKRVWRIRRPPPDER 217 (617)
T ss_pred ceecc-cccccHHHHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEechhhhhhhcCCcHHhhhhhhhhccCCCCCHH
Confidence 11111 223332 367888777777743 2478988886532111111011122222233322110
Q ss_pred ----------CCCCCEEEEEeCHhHHHHHHHHHHHHh-CCCc
Q 005021 603 ----------GNKPDVILIGTGSELEIAAKAAEELRK-GGKA 633 (719)
Q Consensus 603 ----------~~g~dvtIva~G~~v~~al~Aa~~L~~-~Gi~ 633 (719)
...+.++|++-|.....|.++...+.+ .||-
T Consensus 218 eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iP 259 (617)
T COG3962 218 ELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIP 259 (617)
T ss_pred HHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCc
Confidence 014567777777666777777666644 4654
Done!