Query 005021
Match_columns 719
No_of_seqs 264 out of 2479
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 12:58:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rim_A Transketolase, TK; TPP, 100.0 2E-126 7E-131 1107.9 54.9 629 86-719 20-698 (700)
2 3m49_A Transketolase; alpha-be 100.0 7E-123 2E-127 1079.3 56.9 627 88-719 29-690 (690)
3 3uk1_A Transketolase; structur 100.0 2E-123 5E-128 1086.6 48.4 621 89-719 46-710 (711)
4 3kom_A Transketolase; rossmann 100.0 1E-122 4E-127 1075.4 53.2 623 87-719 5-663 (663)
5 3l84_A Transketolase; TKT, str 100.0 2E-118 7E-123 1033.7 57.5 597 86-717 4-631 (632)
6 1itz_A Transketolase; calvin c 100.0 1E-117 4E-122 1040.2 61.5 642 75-718 2-675 (675)
7 1r9j_A Transketolase; domains, 100.0 2E-116 7E-121 1028.6 57.4 618 88-719 6-655 (673)
8 2r8o_A Transketolase 1, TK 1; 100.0 1E-116 4E-121 1032.1 51.8 625 88-719 4-663 (669)
9 1gpu_A Transketolase; transfer 100.0 1E-115 4E-120 1023.9 57.9 621 87-719 6-664 (680)
10 2e6k_A Transketolase; structur 100.0 1E-114 4E-119 1012.0 55.6 618 87-719 7-651 (651)
11 3mos_A Transketolase, TK; thia 100.0 2E-104 5E-109 920.0 46.7 570 85-716 10-615 (616)
12 2qtc_A Pyruvate dehydrogenase 100.0 3.8E-93 1.3E-97 845.4 45.6 609 80-719 70-856 (886)
13 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.9E-86 6.5E-91 773.2 41.1 537 86-719 28-622 (629)
14 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 4.9E-86 1.7E-90 769.1 40.5 539 86-719 26-619 (621)
15 3ahc_A Phosphoketolase, xylulo 100.0 4.3E-80 1.5E-84 720.2 33.8 570 100-719 74-785 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 1.9E-49 6.4E-54 472.6 40.5 486 195-716 317-930 (933)
17 2yic_A 2-oxoglutarate decarbox 100.0 4.1E-49 1.4E-53 467.5 33.3 483 196-697 242-852 (868)
18 2bfd_B 2-oxoisovalerate dehydr 100.0 3.8E-50 1.3E-54 435.0 22.5 291 407-719 19-340 (342)
19 1ik6_A Pyruvate dehydrogenase; 100.0 4.2E-50 1.5E-54 437.9 20.1 289 408-719 50-367 (369)
20 2ozl_B PDHE1-B, pyruvate dehyd 100.0 1E-49 3.5E-54 431.0 22.1 293 406-719 12-339 (341)
21 1w85_B Pyruvate dehydrogenase 100.0 1.6E-49 5.5E-54 427.4 23.1 291 409-719 3-322 (324)
22 1umd_B E1-beta, 2-OXO acid deh 100.0 3.4E-49 1.2E-53 425.0 22.7 290 409-719 4-322 (324)
23 2xt6_A 2-oxoglutarate decarbox 100.0 4E-48 1.4E-52 469.4 33.6 484 195-697 486-1097(1113)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 1.6E-48 5.5E-53 422.1 22.6 287 409-719 5-336 (338)
25 1umd_A E1-alpha, 2-OXO acid de 99.9 1.1E-24 3.6E-29 237.8 18.5 186 90-300 43-235 (367)
26 2bfd_A 2-oxoisovalerate dehydr 99.8 6.3E-18 2.2E-22 185.9 18.6 141 141-300 106-253 (400)
27 1w85_A Pyruvate dehydrogenase 99.7 4E-17 1.4E-21 177.6 19.6 167 99-300 63-233 (368)
28 1yd7_A 2-keto acid:ferredoxin 99.7 4.6E-18 1.6E-22 187.1 7.8 288 410-719 24-394 (395)
29 2ozl_A PDHE1-A type I, pyruvat 99.7 1.2E-15 4.1E-20 165.6 23.1 161 108-300 63-229 (365)
30 1qs0_A 2-oxoisovalerate dehydr 99.7 6.9E-15 2.4E-19 161.7 26.4 97 193-300 175-273 (407)
31 2c42_A Pyruvate-ferredoxin oxi 99.3 1.2E-10 4.1E-15 143.7 22.2 208 457-675 54-334 (1231)
32 3ju3_A Probable 2-oxoacid ferr 98.9 9.6E-10 3.3E-14 100.2 7.0 99 605-718 13-115 (118)
33 4feg_A Pyruvate oxidase; carba 98.6 2E-08 6.7E-13 116.4 6.6 88 197-300 418-516 (603)
34 2uz1_A Benzaldehyde lyase; thi 98.6 3.4E-08 1.2E-12 113.4 6.6 90 197-300 417-518 (563)
35 2vk8_A Pyruvate decarboxylase 98.6 3.5E-08 1.2E-12 113.3 6.3 93 196-300 410-512 (563)
36 2iht_A Carboxyethylarginine sy 98.6 2.1E-08 7.3E-13 115.4 4.0 88 197-300 434-533 (573)
37 1v5e_A Pyruvate oxidase; oxido 98.5 5E-08 1.7E-12 112.7 6.4 88 197-300 411-508 (590)
38 1ozh_A ALS, acetolactate synth 98.5 3.9E-08 1.3E-12 113.0 4.6 88 197-300 418-515 (566)
39 1q6z_A BFD, BFDC, benzoylforma 98.5 4E-08 1.4E-12 112.0 4.4 86 199-300 401-497 (528)
40 2pan_A Glyoxylate carboligase; 98.5 7.7E-08 2.6E-12 111.7 5.9 88 197-300 440-548 (616)
41 2nxw_A Phenyl-3-pyruvate decar 98.5 5.7E-08 2E-12 111.6 4.7 87 198-300 421-513 (565)
42 2pgn_A Cyclohexane-1,2-dione h 98.5 4.6E-08 1.6E-12 113.0 3.6 88 197-300 422-519 (589)
43 1ybh_A Acetolactate synthase, 98.5 6.7E-08 2.3E-12 111.6 4.7 88 197-300 424-530 (590)
44 2vbf_A Branched-chain alpha-ke 98.4 7.3E-08 2.5E-12 110.8 4.0 89 196-300 422-522 (570)
45 2vbi_A Pyruvate decarboxylase; 98.4 5.1E-08 1.8E-12 112.0 2.6 88 197-300 407-504 (566)
46 1ovm_A Indole-3-pyruvate decar 98.4 7.1E-08 2.4E-12 110.5 3.5 88 197-300 406-504 (552)
47 1t9b_A Acetolactate synthase, 98.4 1.6E-07 5.4E-12 110.1 5.2 88 197-300 511-609 (677)
48 2wvg_A PDC, pyruvate decarboxy 98.4 1.5E-07 5E-12 108.2 4.5 83 197-295 411-498 (568)
49 3eya_A Pyruvate dehydrogenase 98.3 4.6E-07 1.6E-11 103.7 5.5 88 197-300 404-501 (549)
50 2x7j_A 2-succinyl-5-enolpyruvy 98.2 9.9E-07 3.4E-11 102.1 5.6 86 198-300 454-552 (604)
51 2c31_A Oxalyl-COA decarboxylas 98.1 2.1E-06 7.2E-11 98.6 6.6 87 197-300 424-519 (568)
52 2q28_A Oxalyl-COA decarboxylas 98.1 1.7E-06 5.7E-11 99.4 5.6 87 197-300 419-516 (564)
53 3hww_A 2-succinyl-5-enolpyruvy 97.7 2.1E-05 7.4E-10 90.0 5.5 85 198-300 416-511 (556)
54 3lq1_A 2-succinyl-5-enolpyruvy 97.5 4.1E-05 1.4E-09 88.0 3.3 79 204-300 441-532 (578)
55 1v5e_A Pyruvate oxidase; oxido 93.2 0.34 1.1E-05 55.5 11.1 114 458-578 45-165 (590)
56 2iht_A Carboxyethylarginine sy 91.4 0.69 2.4E-05 52.6 10.8 117 457-577 49-171 (573)
57 2pgn_A Cyclohexane-1,2-dione h 91.4 0.57 1.9E-05 53.6 10.0 115 458-577 45-165 (589)
58 2uz1_A Benzaldehyde lyase; thi 91.3 0.82 2.8E-05 51.8 11.2 115 457-577 42-164 (563)
59 1ozh_A ALS, acetolactate synth 90.4 0.84 2.9E-05 51.8 10.2 113 458-577 50-170 (566)
60 1ybh_A Acetolactate synthase, 90.3 1.1 3.9E-05 51.0 11.3 114 458-577 52-172 (590)
61 3hww_A 2-succinyl-5-enolpyruvy 89.6 1.1 3.7E-05 50.8 10.1 114 458-577 48-171 (556)
62 1q6z_A BFD, BFDC, benzoylforma 89.3 1.1 3.9E-05 50.2 10.0 115 458-578 40-162 (528)
63 2x7j_A 2-succinyl-5-enolpyruvy 88.7 0.94 3.2E-05 51.9 8.9 115 458-577 71-198 (604)
64 1t9b_A Acetolactate synthase, 88.4 1.4 4.7E-05 51.3 10.1 113 458-576 122-241 (677)
65 2pan_A Glyoxylate carboligase; 88.0 2 7E-05 49.2 11.1 115 458-577 67-188 (616)
66 2c31_A Oxalyl-COA decarboxylas 87.3 0.91 3.1E-05 51.5 7.6 115 457-577 48-171 (568)
67 3eya_A Pyruvate dehydrogenase 87.2 2 6.8E-05 48.5 10.3 111 458-576 43-161 (549)
68 3lq1_A 2-succinyl-5-enolpyruvy 87.1 1.4 4.9E-05 50.0 9.1 116 458-577 51-178 (578)
69 2nxw_A Phenyl-3-pyruvate decar 86.3 3.3 0.00011 46.9 11.5 119 456-577 58-186 (565)
70 2wvg_A PDC, pyruvate decarboxy 86.2 3.3 0.00011 46.8 11.5 117 458-578 43-170 (568)
71 2vbi_A Pyruvate decarboxylase; 86.0 3.4 0.00012 46.7 11.4 116 458-578 43-170 (566)
72 2q28_A Oxalyl-COA decarboxylas 85.7 2.5 8.7E-05 47.7 10.2 116 457-577 46-169 (564)
73 2vk8_A Pyruvate decarboxylase 85.4 3.9 0.00013 46.2 11.5 115 458-577 44-170 (563)
74 4feg_A Pyruvate oxidase; carba 85.2 3.3 0.00011 47.3 10.9 114 458-577 52-171 (603)
75 2vbf_A Branched-chain alpha-ke 80.2 5.5 0.00019 45.0 10.1 114 458-577 65-190 (570)
76 1ovm_A Indole-3-pyruvate decar 78.9 5.6 0.00019 44.8 9.5 116 458-577 45-170 (552)
77 1w85_A Pyruvate dehydrogenase 77.3 8.9 0.0003 41.0 10.0 104 468-574 146-263 (368)
78 1umd_A E1-alpha, 2-OXO acid de 74.7 18 0.00061 38.5 11.6 110 461-574 142-265 (367)
79 2c42_A Pyruvate-ferredoxin oxi 74.6 3.7 0.00013 50.9 6.9 67 231-299 953-1037(1231)
80 2bfd_A 2-oxoisovalerate dehydr 70.5 13 0.00044 40.2 9.3 103 469-574 167-283 (400)
81 1r9j_A Transketolase; domains, 69.6 15 0.00051 42.5 10.1 82 490-574 157-246 (673)
82 3m49_A Transketolase; alpha-be 69.5 15 0.00052 42.6 10.1 82 490-574 181-269 (690)
83 2ozl_A PDHE1-A type I, pyruvat 66.5 12 0.00041 39.9 7.9 106 468-574 144-259 (365)
84 3l84_A Transketolase; TKT, str 63.2 21 0.0007 41.0 9.5 101 469-574 119-238 (632)
85 1qs0_A 2-oxoisovalerate dehydr 60.2 26 0.00089 37.9 9.2 102 470-574 187-303 (407)
86 1gpu_A Transketolase; transfer 60.1 17 0.00059 42.1 8.2 82 490-574 157-246 (680)
87 2r8o_A Transketolase 1, TK 1; 59.9 20 0.00068 41.4 8.7 82 490-574 155-243 (669)
88 3rim_A Transketolase, TK; TPP, 59.3 20 0.0007 41.6 8.6 81 491-574 178-265 (700)
89 3kom_A Transketolase; rossmann 58.1 34 0.0011 39.5 10.1 82 490-574 157-245 (663)
90 2e6k_A Transketolase; structur 56.8 43 0.0015 38.5 10.7 81 490-574 159-246 (651)
91 1itz_A Transketolase; calvin c 56.1 45 0.0015 38.5 10.8 82 490-574 168-257 (675)
92 3uk1_A Transketolase; structur 55.4 15 0.00051 42.8 6.6 81 490-574 196-283 (711)
93 2jgd_A 2-oxoglutarate dehydrog 55.1 28 0.00097 41.7 9.0 111 460-574 318-452 (933)
94 3kkj_A Amine oxidase, flavin-c 52.6 12 0.0004 35.6 4.4 31 606-639 3-33 (336)
95 3mos_A Transketolase, TK; thia 51.4 43 0.0015 38.2 9.5 100 468-574 125-238 (616)
96 2o1x_A 1-deoxy-D-xylulose-5-ph 47.4 78 0.0027 36.1 10.9 101 469-574 128-285 (629)
97 2o1s_A 1-deoxy-D-xylulose-5-ph 47.1 95 0.0032 35.3 11.6 111 458-574 116-280 (621)
98 2wem_A Glutaredoxin-related pr 34.1 47 0.0016 29.1 4.9 87 606-707 20-112 (118)
99 2qtc_A Pyruvate dehydrogenase 32.7 1.9E+02 0.0066 34.4 11.3 77 469-548 197-291 (886)
100 2fvt_A Conserved hypothetical 32.4 18 0.0006 33.0 1.8 36 605-640 67-103 (135)
101 2ab1_A Hypothetical protein; H 30.8 19 0.00066 32.1 1.8 35 605-639 61-97 (122)
102 2fi9_A Outer membrane protein; 30.3 17 0.00057 32.7 1.3 36 605-640 68-104 (128)
103 3fwz_A Inner membrane protein 29.5 57 0.002 28.9 4.9 33 605-640 7-39 (140)
104 3ipz_A Monothiol glutaredoxin- 28.1 1.2E+02 0.004 25.7 6.4 36 606-641 18-57 (109)
105 2yic_A 2-oxoglutarate decarbox 27.7 1.3E+02 0.0045 35.7 8.6 88 484-574 279-380 (868)
106 2gm2_A Conserved hypothetical 26.1 21 0.00073 32.2 1.2 36 605-640 64-100 (132)
107 5nul_A Flavodoxin; electron tr 25.2 54 0.0019 28.8 3.8 32 613-644 9-40 (138)
108 1id1_A Putative potassium chan 24.4 79 0.0027 28.3 4.9 33 605-640 3-35 (153)
109 3zyw_A Glutaredoxin-3; metal b 24.2 1.1E+02 0.0037 26.2 5.4 36 606-641 16-55 (111)
110 2wci_A Glutaredoxin-4; redox-a 24.2 1.4E+02 0.0046 26.8 6.3 36 606-641 35-74 (135)
111 3lyu_A Putative hydrogenase; t 23.9 78 0.0027 28.4 4.7 38 605-642 18-55 (142)
112 1xmp_A PURE, phosphoribosylami 23.7 2.8E+02 0.0094 26.1 8.3 35 605-639 11-48 (170)
113 3llv_A Exopolyphosphatase-rela 23.5 88 0.003 27.4 4.9 33 605-640 6-38 (141)
114 3cpk_A Uncharacterized protein 23.4 31 0.0011 31.9 1.7 35 605-639 88-123 (150)
115 3oz2_A Digeranylgeranylglycero 22.6 60 0.0021 33.4 4.1 31 606-639 5-35 (397)
116 2ywl_A Thioredoxin reductase r 22.2 75 0.0026 29.0 4.3 31 607-640 3-33 (180)
117 3gx8_A Monothiol glutaredoxin- 21.4 85 0.0029 27.4 4.3 36 606-641 16-58 (121)
118 1wik_A Thioredoxin-like protei 20.6 63 0.0021 27.4 3.1 36 606-641 15-54 (109)
No 1
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.9e-126 Score=1107.88 Aligned_cols=629 Identities=46% Similarity=0.783 Sum_probs=575.8
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 86 ALVEKSV-NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 86 ~~l~~la-~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
+.|+++| ++||.++++|+.++++||+|++||++||+++||+.+||+||+||+|++|||||||+||++|++|++|+|+||
T Consensus 20 ~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~ 99 (700)
T 3rim_A 20 TEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGF 99 (700)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhCC
Confidence 3489998 899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCC---ccCCcEEEEEEccc
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDN---EIVDHYTYVILGDG 241 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~---~~~~~~v~~iiGDG 241 (719)
. ++.++|++|||++|.++|||++.++||++++||++|||++.|+|||+|.|+++++||++++ +..+++|||++|||
T Consensus 100 ~-~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 100 G-LELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp S-CCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred C-CCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 2 4999999999999999999998889999999999999999999999999999999999876 56789999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE---------------------
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------------------- 300 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v--------------------- 300 (719)
+++||++|||+|+|++++|+|||+|||||+++|+++++....+++.++|++|||++++|
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~~~~ 258 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQAVTD 258 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHCCS
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhccchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999998777889999999999999987
Q ss_pred -------eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCC-CCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhh
Q 005021 301 -------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEY 372 (719)
Q Consensus 301 -------~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~ 372 (719)
+|+||+|.+.+++...||+.++++++++.++++++|+.+ +|.+|++++.+|+....+|+..+.+|++.+++|
T Consensus 259 ~P~lI~~~T~kG~G~~~~e~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~ 338 (700)
T 3rim_A 259 RPSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAW 338 (700)
T ss_dssp SCEEEEEECCTTTTCTTTTTSHHHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEeeecCCccCCCccccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 689999999888888999999999999999999999655 599999999999877777888899999999999
Q ss_pred hhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcc
Q 005021 373 EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQK 452 (719)
Q Consensus 373 ~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~ 452 (719)
++.+|+...++.+..++++|..|....|+|..+.++.+||++++++|.+++++||+++++++|++.|+++.++++..|++
T Consensus 339 ~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~ 418 (700)
T 3rim_A 339 ARREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGP 418 (700)
T ss_dssp HHHCHHHHHHHHHHHTTCCCTTTTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESC
T ss_pred HhhChHHHHHHHHHhccCCCcchhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcc
Confidence 99999998888888888889888777788865556789999999999999999999999999998777665556677876
Q ss_pred cCC------C----CCccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc
Q 005021 453 DTP------E----ERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG 521 (719)
Q Consensus 453 ~~~------p----~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g 521 (719)
+| | +||||+||+||+|+++|+|||++ | ++||+.+|+.|++|+++|||+.|++++||+|+++|+|+|
T Consensus 419 -~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~~gG--~~Pv~~tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g 495 (700)
T 3rim_A 419 -PSISTKEYTAHWYGRTLHFGVREHAMGAILSGIVLHGP--TRAYGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG 495 (700)
T ss_dssp -GGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG
T ss_pred -cccccccCCcccCCceeecCccHHHHHHHHHHHHHcCC--CEEEEEecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc
Confidence 67 8 59999999999999999999999 6 799999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCC--CcEEEEEcCCCCCCCCCCCccccccccEEEec
Q 005021 522 LGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRK--RPSILALSRQKLPHLAGTSIDGVEKGAYIISD 599 (719)
Q Consensus 522 ~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~--~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~ 599 (719)
+|+||+|||++||+++||+||||+|++|+|++|++.+|++|++..+ +|++||++|+.+|.++.++.+.+++|++++ +
T Consensus 496 vG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~~~~~~~~~~~~G~~vl-r 574 (700)
T 3rim_A 496 LGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPVLDGTDAEGVARGGYVL-S 574 (700)
T ss_dssp GCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECCCTTCCHHHHHHSCEEE-E
T ss_pred cCCCCCccCChhHHHHHhcCCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCCcCcccccccCCCcEEE-e
Confidence 9999999999999999999999999999999999999999997545 699999999998876654335688999754 5
Q ss_pred CCC----CCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCc
Q 005021 600 NSS----GNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 675 (719)
Q Consensus 600 ~~~----~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~ 675 (719)
++. ++.+||+||++|+||++|++||++|+++||+++|||++|++|||.+...|+++|++...+.+|++|++...||
T Consensus 575 ~g~~~~~~~~~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~ 654 (700)
T 3rim_A 575 DAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCW 654 (700)
T ss_dssp CCSCCCTTCCCSEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGG
T ss_pred cCCccccCCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhH
Confidence 420 0013999999999999999999999999999999999999999998777778888753444799999999999
Q ss_pred hhhhcCCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 676 EKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 676 ~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.++++.....+|+|+|+.||+.++|+++||||+++|+++|+++|
T Consensus 655 ~~~~~~~~~~igid~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l 698 (700)
T 3rim_A 655 HQLVGDTGEIVSIEHYGESADHKTLFREYGFTAEAVAAAAERAL 698 (700)
T ss_dssp HHHHCTTCEEECCCSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEccCcCcCcCCHHHHHHHhCcCHHHHHHHHHHHh
Confidence 99887777889999999999999999999999999999999864
No 2
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=6.6e-123 Score=1079.34 Aligned_cols=627 Identities=54% Similarity=0.929 Sum_probs=573.2
Q ss_pred HHHHH-HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCC
Q 005021 88 VEKSV-NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS 166 (719)
Q Consensus 88 l~~la-~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~ 166 (719)
|+++| ++||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++|+|+||.
T Consensus 29 l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~- 107 (690)
T 3m49_A 29 IEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYD- 107 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHHHHHHCCC-
Confidence 88888 8999999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred CChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChh
Q 005021 167 VQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 246 (719)
Q Consensus 167 ~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG 246 (719)
++.++|++|||++|+++|||++.++||++++||++|+|++.|+|+|+|.++++.+||++++++.+++|||++|||+++||
T Consensus 108 ~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG 187 (690)
T 3m49_A 108 VTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEG 187 (690)
T ss_dssp CCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSH
T ss_pred CCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhc
Confidence 48999999999999999999998999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE--------------------------
Q 005021 247 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-------------------------- 300 (719)
Q Consensus 247 ~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v-------------------------- 300 (719)
++|||+++|++++|+|||+|+|||+|+|++++.....+++.++|++|||+++.|
T Consensus 188 ~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI 267 (690)
T 3m49_A 188 VSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLI 267 (690)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEE
T ss_pred cHHHHHHHHHHhCCCeEEEEEECCCeecccchhhccchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999999999999998777789999999999999988
Q ss_pred --eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCC-CCCCcHHHHHHHHH-HhhcchhHHHHHHHHHhhhhhcC
Q 005021 301 --TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKY 376 (719)
Q Consensus 301 --~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~ 376 (719)
+|+||+|.+.+++...||+.+++.++++.++++++|+.+ +|++|++++.+|+. ...+|...+..|++.+.+|..++
T Consensus 268 ~v~T~kG~G~~~~~~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 347 (690)
T 3m49_A 268 EVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAY 347 (690)
T ss_dssp EEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEeecccccCcccCcccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhC
Confidence 689999998888889999999999999999999999666 89999998889876 45667777889999999999889
Q ss_pred chhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCC
Q 005021 377 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 456 (719)
Q Consensus 377 p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p 456 (719)
|+.+.++.+.+.+++|..|....|+|..+ ++.+||++++++|.++++++|+++++++|+++|+++.+++...|+++.+|
T Consensus 348 ~~~a~~~~~~~~~~lp~~~~~~~~~~~~~-~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~ 426 (690)
T 3m49_A 348 PELANELQAAMNGLLPEGWEQNLPTYELG-SKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYS 426 (690)
T ss_dssp HHHHHHHHHHHTTCCCTTGGGGCCCCCTT-CEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTT
T ss_pred HHHHHHHHHHhcccCchhhhhhccccccc-cchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCC
Confidence 99888888888889998898888888653 57899999999999999999999999999988877766666778775579
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
+||||+||+||+|+++|+|||++ | ++||+.||+.|++++..|||+.|++++||+|+++|+|+++|+||+|||++||+
T Consensus 427 ~R~~d~GIaE~~mv~~A~GlA~~gG--~~P~~~tf~~Fs~f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq~ied~ 504 (690)
T 3m49_A 427 GKNIWYGVREFAMGAAMNGIALHGG--LKTYGGTFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQL 504 (690)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHH
T ss_pred CceEEcCchHHHHHHHHHHHHHcCC--CEEEEEecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHH
Confidence 99999999999999999999999 6 79999999999999999999999999999999999999999999999999999
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC---ccccccccEEEecCCCCCCCCEEEEE
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS---IDGVEKGAYIISDNSSGNKPDVILIG 612 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~---~~~~~~G~~~i~~~~~~~g~dvtIva 612 (719)
++||+||||+|++|+|++|++.+|++|++..++|++||++|+.+|.++.+. .+.+++|+|++++.. ++.+|++||+
T Consensus 505 a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~~vlr~g~-~g~~dvtiia 583 (690)
T 3m49_A 505 AALRAMPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSASK-KETADVILLA 583 (690)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSCEEEECCS-SSSCSEEEEE
T ss_pred HHHhcCCCCEEEeeCCHHHHHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCeEEEEecC-CCCCCEEEEE
Confidence 999999999999999999999999999975589999999999888654322 245788987654420 0024999999
Q ss_pred eCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCC
Q 005021 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 692 (719)
Q Consensus 613 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~ 692 (719)
+|+||+.|++||++|+++||+++|||++|++|||.+...++++|++...+.+|++|++...||.++++.....+|+|.|+
T Consensus 584 ~G~~v~~Al~Aa~~L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~~~~~~~~~~igid~Fg 663 (690)
T 3m49_A 584 TGSEVSLAVEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDVLGIDTFG 663 (690)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHHTTTCEEECCCSCC
T ss_pred echHHHHHHHHHHHHHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHHHHhccCCCEEccCcCc
Confidence 99999999999999999999999999999999998766677888853333469999999999999987666789999999
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 693 ASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 693 ~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.+|+.++|+++||||+++|+++|+++|
T Consensus 664 ~sg~~~~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 664 ASAPGEKIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp CSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 3
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=1.5e-123 Score=1086.55 Aligned_cols=621 Identities=53% Similarity=0.862 Sum_probs=553.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCC
Q 005021 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (719)
Q Consensus 89 ~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~ 168 (719)
+++|++||.++++++.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++++||. ++
T Consensus 46 ~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~-~~ 124 (711)
T 3uk1_A 46 TLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYD-LP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCS-CC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCC-CC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999982 38
Q ss_pred hhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHH
Q 005021 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (719)
Q Consensus 169 ~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (719)
.++|++|||++|.++|||+...+||+++++|++|+|++.|+|+|+|.++++.+||++++++.+++|||++|||+++||++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 99999999999999999998789999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEE-E--------------------------e
Q 005021 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW-V--------------------------T 301 (719)
Q Consensus 249 ~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~-v--------------------------~ 301 (719)
|||+++|++++|+|||+|+|||+++|+++++....+++.++|++|||++++ | +
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~v~ 284 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCK 284 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCcccccchhhhcCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 999999999999999999999999999999877778999999999999998 5 7
Q ss_pred eeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhh
Q 005021 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAA 381 (719)
Q Consensus 302 t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~ 381 (719)
|+||+|.+.+++...||+.+++.++++.++++++|+.+||++|++++.+|+.. .+|...+..|++.+.+|++++|+...
T Consensus 285 T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~-~~g~~~~~~w~~~~~~~~~~~p~~a~ 363 (711)
T 3uk1_A 285 TRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAWDAK-EAGKRSEDDWNAAFAQYRAKYPAEAA 363 (711)
T ss_dssp C--------------------CHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cccccCCCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCccCChHHHHHHHHH-hccchhHHHHHHHHHHHHhhChhhHH
Confidence 89999998888888999999999999999999999989999999998898755 66777788999999999998998888
Q ss_pred hhhhhhcCCCCCcccccCCCCCC----CCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccC---
Q 005021 382 EFKSISSGQLPAGWEKALPTYTP----ESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT--- 454 (719)
Q Consensus 382 ~~~~~~~g~~p~~~~~~~~~~~~----~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~--- 454 (719)
++.+..++++|.+|...++.+.. ..++.+||++++++|.++++++|+++++++|+++|+++.++++..|++ +
T Consensus 364 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~-~~~~ 442 (711)
T 3uk1_A 364 EFERRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRA-NADG 442 (711)
T ss_dssp HHHHHHHTCCCTTHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEE-CSSS
T ss_pred HHHHhhccCCCchHHHHhhHhhhhhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhh-hhcc
Confidence 88877788888777544333211 134578999999999999999999999999998887766566677876 7
Q ss_pred CC---CCccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCC
Q 005021 455 PE---ERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ 530 (719)
Q Consensus 455 ~p---~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq 530 (719)
|| +||||+||+||+|+++|+|||++ | ++||+.+|++|++|+++|||+.|++++||+|+++|+|+|+|+||+|||
T Consensus 443 ~p~~~~R~~d~GIaE~~mv~~AaGlA~~~G--~~Pv~~~f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~THq 520 (711)
T 3uk1_A 443 PGVQWGNHINYGVREFGMSAAINGLVLHGG--YKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQ 520 (711)
T ss_dssp SSEECCSEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTC
T ss_pred CCCCCCcEEEeCccHHHHHHHHHHHHHcCC--CEEEEEEhHHHHHHHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCccC
Confidence 99 99999999999999999999996 7 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCCCCCC---
Q 005021 531 PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNK--- 605 (719)
Q Consensus 531 ~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~~~~g--- 605 (719)
++||+++||+||||+|++|+|++|++.+|++|++ .++|+|||++|+++|.++.++ .+.+++|+|++++.. |
T Consensus 521 ~~ed~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~-~~~Pv~ir~~r~~~p~~~~~~~~~~~i~~G~~vl~~~~---G~~~ 596 (711)
T 3uk1_A 521 SVEHVASLRLIPNLDVWRPADTVETAVAWTYAVA-HQHPSCLIFSRQNLAFNARTDAQLANVEKGGYVLRDWD---EEIV 596 (711)
T ss_dssp CSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHH-SSSCEEEECCSSEECCCCCCHHHHHHGGGSSEEEECCC---SSCC
T ss_pred ChhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEeeCCCCCCCCCccccccccCCCeEEEEecC---CCCC
Confidence 9999999999999999999999999999999997 799999999999988765432 246889999776522 5
Q ss_pred -CCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCce
Q 005021 606 -PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGK 684 (719)
Q Consensus 606 -~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~ 684 (719)
+||+||++|+||++|++||++|+++||+++|||++|++|||+++..|+++|++++.. +|++|++...||+++++.+..
T Consensus 597 ~~dvtiia~G~~v~~al~Aa~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~-~V~vE~~~~~g~~~~~g~~~~ 675 (711)
T 3uk1_A 597 ARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVR-RVAIEAGVTDFWRKYVGLEGG 675 (711)
T ss_dssp SEEEEEEECTTHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCSGGGHHHHTTTSE
T ss_pred CCCEEEEEecHHHHHHHHHHHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCe-EEEEeCCccccHHHHhCCCce
Confidence 799999999999999999999999999999999999999999988788899998864 699999999999999887778
Q ss_pred EEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 685 AIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 685 ~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
++|+|.|+.||+.++|+++||||+++|+++|+++|
T Consensus 676 ~iGid~Fg~sg~~~~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 676 VVGIDTFGESAPAGVLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp EECCCSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred EEEeCCCcCcCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999864
No 4
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=1.2e-122 Score=1075.37 Aligned_cols=623 Identities=48% Similarity=0.812 Sum_probs=562.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCC
Q 005021 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS 166 (719)
Q Consensus 87 ~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~ 166 (719)
+++++|++||.++++++.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++++||.
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~- 83 (663)
T 3kom_A 5 IPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTGYD- 83 (663)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHTCS-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCC-
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred CChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChh
Q 005021 167 VQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 246 (719)
Q Consensus 167 ~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG 246 (719)
++.++|++|||++|.++|||++..+||+++++|++|+|++.|+|+|+|.++++.+||++++++.+++|||++|||+++||
T Consensus 84 ~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG 163 (663)
T 3kom_A 84 LSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEG 163 (663)
T ss_dssp CCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSH
T ss_pred CCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhc
Confidence 38999999999999999999998899999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE-------------------------
Q 005021 247 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV------------------------- 300 (719)
Q Consensus 247 ~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v------------------------- 300 (719)
++|||+++|++++|+|||+|+|||+|+|+++++....+++.++|++|||+++ .|
T Consensus 164 ~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI 243 (663)
T 3kom_A 164 VSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWFSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLI 243 (663)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEE
T ss_pred hHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhcchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 9999999999999999999999999999999987778899999999999999 66
Q ss_pred --eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCch
Q 005021 301 --TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPE 378 (719)
Q Consensus 301 --~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 378 (719)
+|+||+|.+..++...+|+.++++++++.++++++|+.+||.+|++++++|+.. .+|...+..|++.+.+|+++ |
T Consensus 244 ~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~-~~g~~~~~~w~~~~~~~~~~-p- 320 (663)
T 3kom_A 244 CCKTVIGFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAR-EKGQALEANWQGQRNLFKDS-P- 320 (663)
T ss_dssp EEECCTTTTCTTTTTCSSTTSSCCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHTTS-T-
T ss_pred EEecccccccCCCCCCccccCCCCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHH-hhcchhhHHHHHHHHHhhcc-h-
Confidence 689999999888888999999999999999999999888999999888888644 55667778999999999877 7
Q ss_pred hhhhhhhhhcCCCCCcccccCCCCC----CCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccC
Q 005021 379 EAAEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT 454 (719)
Q Consensus 379 ~~~~~~~~~~g~~p~~~~~~~~~~~----~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~ 454 (719)
...++.+.+++++|.+|...++.+. ...++.+||++++++|.++++++|+++++++|+++|+++.+++...|++++
T Consensus 321 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~ 400 (663)
T 3kom_A 321 KFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQ 400 (663)
T ss_dssp THHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCS
T ss_pred HHHHHHHHhccCCCcchhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCccccccccccccc
Confidence 6777777778888877754333221 123468999999999999999999999999999988877666666785338
Q ss_pred CCCCccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChh
Q 005021 455 PEERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 533 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~e 533 (719)
||+||||+||+||+|+++|+|||++ | ++||+.+|++|++|+++|||+.|++++||+|+++|+|+|+|+||+|||++|
T Consensus 401 ~p~R~~d~GIaE~~~v~~a~GlA~~gG--~~P~~~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~e 478 (663)
T 3kom_A 401 EGANYLSYGVREFGMAAIMNGLSLYGG--IKPYGGTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIE 478 (663)
T ss_dssp TTCCEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSS
T ss_pred CCCCeEecCccHHHHHHHHHHHHHcCC--CEEEEEehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHH
Confidence 9999999999999999999999999 6 799999999999999999999999999999999999999999999999999
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCCCCCCCCEEEE
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILI 611 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~~~~g~dvtIv 611 (719)
|+++||+||||+|++|+|++|++.+|++|+++.++|++||++|+++|.++... .+.+++|+|++++.+ |+|||||
T Consensus 479 d~a~lr~iPnl~V~~Pad~~e~~~~l~~A~~~~~~Pv~ir~~r~~~p~~~~~~~~~~~~~~G~~vl~~~~---g~dvtii 555 (663)
T 3kom_A 479 HVPSLRLIPNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNLMPVVQTQHQVANIARGGYLVKDNP---DAKLTIV 555 (663)
T ss_dssp HHHHHHTSTTCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSEECCCCCCHHHHHHHTTTCEEEECCT---TCSCEEE
T ss_pred HHHHHhcCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEccCccCCCcCccccchhcccCceEEEEecC---CCCEEEE
Confidence 99999999999999999999999999999975699999999999988765432 245788988877642 6899999
Q ss_pred EeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhc-CCceEEeeCc
Q 005021 612 GTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG-SKGKAIGIDR 690 (719)
Q Consensus 612 a~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~-~~~~~ig~d~ 690 (719)
++|+||++|++||++|+++||+++|||++|++|||+++..|+++|++++.. +|++|++...||.++++ .....+|+|.
T Consensus 556 a~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~-~v~vE~~~~~g~~~~~gG~~~~~igid~ 634 (663)
T 3kom_A 556 ATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHEYKKTVIKDDIP-AVFVEMAQPDMWYKYMPKAGGEVKGIYS 634 (663)
T ss_dssp ECTTHHHHHHHHHHHHHHTTCCCEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCCGGGGGGCCTTCEEEECCCS
T ss_pred EecHHHHHHHHHHHHHHhcCCCeEEEEcCcCCcccccHHHHHHHhcCCCCe-EEEEecCCcccHHHHhcccCCcEEEecC
Confidence 999999999999999999999999999999999999998888899988765 59999999999999886 5667899999
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 691 FGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 691 f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+.+|+.++|+++||||+++|+++|++++
T Consensus 635 Fg~sg~~~~l~~~~Glt~e~I~~~~~~~~ 663 (663)
T 3kom_A 635 FGESAPAEDLFKRFGFTVENISNIVAKYV 663 (663)
T ss_dssp CCCSSCHHHHHHHHTCSHHHHHHHHTTTC
T ss_pred CcCCCCHHHHHHHHCcCHHHHHHHHHhhC
Confidence 99999999999999999999999998865
No 5
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=2e-118 Score=1033.73 Aligned_cols=597 Identities=43% Similarity=0.711 Sum_probs=538.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCC
Q 005021 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (719)
Q Consensus 86 ~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~ 165 (719)
+.|+++|++||.++++++.++++||+|++||++||+++| ..+|+|||+||+|++|||||||+||++|++|++|+++||.
T Consensus 4 ~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L-~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~ 82 (632)
T 3l84_A 4 QILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVL-SYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYD 82 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHH-TTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHH-HHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCC
Confidence 569999999999999999999999999999999999999 6789999999999999999999999999999999999982
Q ss_pred CCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh
Q 005021 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (719)
Q Consensus 166 ~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (719)
++.++|++|||++|.++|||++ ++||++++||++|+|++.|+|+|+|.++++.+|| ++..+++|||++|||+++|
T Consensus 83 -~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n---~~~~d~~v~~v~GDG~~~e 157 (632)
T 3l84_A 83 -LSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLG---SDLIDHKIYCLCGDGDLQE 157 (632)
T ss_dssp -CCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHC---TTTCCCCEEEEEEHHHHHS
T ss_pred -CCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccc---cCCCCCeEEEEECCcchhh
Confidence 3899999999999999999999 9999999999999999999999999999998876 3345899999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE-------------------------
Q 005021 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------- 300 (719)
Q Consensus 246 G~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v------------------------- 300 (719)
|++|||+++|++++|+|||+|+|||+|+|+++++....+++.++|++|||+++.|
T Consensus 158 G~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~~~~P~lI~ 237 (632)
T 3l84_A 158 GISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLII 237 (632)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHTCSSCEEEE
T ss_pred ccHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhcChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999999999999999999998777889999999999999987
Q ss_pred -eeeecCCCccccccccccCCCCCHHHHHHHHHHcCC-CCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCch
Q 005021 301 -TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPE 378 (719)
Q Consensus 301 -~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~-~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 378 (719)
+|+||+|.+..++...||+.+++.++++.++++++| |.+||++|++++.+|++...+|......|++.+.+ +.+|+
T Consensus 238 v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~--~~~p~ 315 (632)
T 3l84_A 238 AKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEK--SAKKE 315 (632)
T ss_dssp EECCTTTTCGGGTTCGGGSSSCCCHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHH--SSCHH
T ss_pred EeeEeeecCCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhc--ccCch
Confidence 789999998888888999999999999999999999 78899999998888875556677778889988765 56676
Q ss_pred hhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CC
Q 005021 379 EAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EE 457 (719)
Q Consensus 379 ~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~ 457 (719)
...++ +|.+|...+|.|.. ..+.++|++++++|.++++.+|+++++++|+++|+++.++ +.+ +| |+
T Consensus 316 ~~~~~-------~p~~~~~~~~~~~~-~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~----~~~-~f~p~ 382 (632)
T 3l84_A 316 LLERL-------LNPDFNKIAYPDFK-GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELH----SMG-DFVEG 382 (632)
T ss_dssp HHHHH-------HSCCSTTCCCCCCT-TCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCT----TSC-BTTTS
T ss_pred hhhhh-------Cccchhhhcchhcc-ccchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcchh----ccc-ccCCC
Confidence 65544 36677776676643 2468899999999999999999999999999877664321 223 68 99
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
||||+||+||+|+++|+|||++ | ++||+++|++|++|+++|||+.|++++||+|+++|+|+|+|+||+|||++||++
T Consensus 383 R~~d~GIaE~~~v~~a~GlA~~gG--~~P~~~~f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a 460 (632)
T 3l84_A 383 KNIHFGIREHAMAAINNAFARYGI--FLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLS 460 (632)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHH
T ss_pred CeEEeCccHHHHHHHHHHHHHcCC--CEEEEEecHHHHHHHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHH
Confidence 9999999999999999999999 6 799999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCC--CccccccccEEEecCCCCCCCCEEEEEeC
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIISDNSSGNKPDVILIGTG 614 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~--~~~~~~~G~~~i~~~~~~~g~dvtIva~G 614 (719)
+||+||||+|++|+|++|++.+|++|++ .++|+|||++|+.+ ++.. ...++.+|++++++.+ |+|+|||++|
T Consensus 461 ~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~r~~~--~~~~~~~~~~~~~g~~vl~~~~---g~dvtiia~G 534 (632)
T 3l84_A 461 TFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLSRQKL--KALNEPVFGDVKNGAYLLKESK---EAKFTLLASG 534 (632)
T ss_dssp HHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECCSSCB--CCCCCCSBCCGGGSSEEEECCT---TCSEEEEECG
T ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEcCCCC--CCCccccccccccccEEEEecC---CCCEEEEEec
Confidence 9999999999999999999999999997 79999999999886 3322 2245666767766532 6899999999
Q ss_pred HhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCC
Q 005021 615 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGAS 694 (719)
Q Consensus 615 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~ 694 (719)
+||++|++||++|+++||+++|||++|++|||+++..|+++|++ + . +|++|+++..||+++++ .++|+|+|+.|
T Consensus 535 ~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~sv~~-~-~-vv~vE~~~~~g~~~~~~---~~iGid~Fg~s 608 (632)
T 3l84_A 535 SEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQERLLK-G-E-VIGVEAAHSNELYKFCH---KVYGIESFGES 608 (632)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHHHHCC-S-E-EEEECSSCCGGGGGTCS---EEECCCSCCCS
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHHHHhcC-C-C-EEEEeCChhhhHHHHhC---eEEEcCCCccc
Confidence 99999999999999999999999999999999997667788887 2 3 69999999999998875 77999999999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 005021 695 APAGKIYKEFGITAEAVITAAKE 717 (719)
Q Consensus 695 g~~~el~~~~gl~~e~I~~~i~~ 717 (719)
|+.++|+++||||+++|+++|++
T Consensus 609 g~~~~l~~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 609 GKDKDVFERFGFSVSKLVNFILS 631 (632)
T ss_dssp SCHHHHHHHTTCSHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHhh
Confidence 99999999999999999999874
No 6
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.2e-117 Score=1040.16 Aligned_cols=642 Identities=86% Similarity=1.364 Sum_probs=571.9
Q ss_pred hhccccc-CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCch
Q 005021 75 AVETLET-STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCM 153 (719)
Q Consensus 75 ~~~~~~~-~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~ 153 (719)
+++|+.. .-+.+.|+++|++||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|
T Consensus 2 ~~~~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~ 81 (675)
T 1itz_A 2 AVETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCM 81 (675)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHH
T ss_pred ccchhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHH
Confidence 3455544 223345999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcE
Q 005021 154 LQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHY 233 (719)
Q Consensus 154 ~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~ 233 (719)
++|++|+++|+..++.++|++|||++|.++|||++.++||+++++|++|+|++.|+|+|+|.++++++||+++++..+++
T Consensus 82 ~lYa~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~ 161 (675)
T 1itz_A 82 LQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHY 161 (675)
T ss_dssp HHHHHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred HHHHHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCE
Confidence 99999999998113889999999999999999999889999999999999999999999999999999999988888999
Q ss_pred EEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE------------
Q 005021 234 TYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV------------ 300 (719)
Q Consensus 234 v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v------------ 300 (719)
|||++|||+++||++|||+++|++++|+|||+|+|||+++|+++++....+++.++|++|||+++ .|
T Consensus 162 v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~a 241 (675)
T 1itz_A 162 TYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAA 241 (675)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHH
T ss_pred EEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhcChhHHHHHHhCCCEEEEEecCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999987667889999999999998 43
Q ss_pred ----------------eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHH
Q 005021 301 ----------------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 364 (719)
Q Consensus 301 ----------------~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~ 364 (719)
+|.+|+|.+..++...+|+.+++.++++.++++++|+.++|+++.+++.+|+....+|...+..
T Consensus 242 l~~a~~~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~ 321 (675)
T 1itz_A 242 IKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEAD 321 (675)
T ss_dssp HHHHHHCCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHH
Confidence 6889999887788889999999999999999999998889999988877775433446666778
Q ss_pred HHHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccc
Q 005021 365 WNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLL 444 (719)
Q Consensus 365 ~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~ 444 (719)
|++.+.+|...+|+....+.+..++++|..|...+|.|....++.++|++++++|.++++++|+++++++|+++++++.+
T Consensus 322 ~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~ 401 (675)
T 1itz_A 322 WNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLL 401 (675)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHCCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCC
T ss_pred HHHHHHHhhhhChHHHHHHHHHhcccCCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccc
Confidence 99998888877888776677777788888888778877433456899999999999999999999999999988877666
Q ss_pred cccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCC
Q 005021 445 KMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE 524 (719)
Q Consensus 445 ~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~ 524 (719)
+++..|++++||+||||+||+||+|+++|+|||++|.+++||+++|++|++|+++|||+.|++++||+|+++|+|+++|+
T Consensus 402 ~g~~~f~~~~~~~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~ 481 (675)
T 1itz_A 402 KMFGDFQKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGE 481 (675)
T ss_dssp TTCCBCCTTCTTCCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCT
T ss_pred cccccccccCCCCCeEeecccHHHHHHHHHHHHhcCCCCEEEEEEHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCC
Confidence 67777864379999999999999999999999999933599999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCC
Q 005021 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGN 604 (719)
Q Consensus 525 dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~ 604 (719)
||+|||++||+++||+||||+|++|+|++|++.+|++|++..++|++||++|+.+|.++.+....+++|+|++++.. .
T Consensus 482 dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~~~~~~~~~~~~Ga~vl~~~~--~ 559 (675)
T 1itz_A 482 DGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLPGTSIEGVEKGGYTISDNS--T 559 (675)
T ss_dssp TCTTTCCSSHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHCTTSCEEEEECSSCBCCCTTCCHHHHTTSSEEEEECC--S
T ss_pred CCCCcCcHHHHHHhccCCCeEEEECCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCccccccccCCEEEeccc--C
Confidence 99999999999999999999999999999999999999975589999999999988776543335788988776521 0
Q ss_pred C--CCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCC
Q 005021 605 K--PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSK 682 (719)
Q Consensus 605 g--~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~ 682 (719)
| +|++||++|+++++|++|+++|+++||+++|||++|++|||+++..|++++++++.+.+|++|++...||+++++.+
T Consensus 560 G~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~~~~~ 639 (675)
T 1itz_A 560 GNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQ 639 (675)
T ss_dssp TTCCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHHCSS
T ss_pred CCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHhcCCC
Confidence 3 89999999999999999999999999999999999999999997667788998853346999999999999998777
Q ss_pred ceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 005021 683 GKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718 (719)
Q Consensus 683 ~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~ 718 (719)
+.++|+|.|+.+|+.++|+++||||+++|+++|+++
T Consensus 640 ~~~ig~d~fg~sg~~~~l~~~~gl~~~~I~~~i~~~ 675 (675)
T 1itz_A 640 GKAIGIDKFGASAPAGTIYKEYGITVESIIAAAKSF 675 (675)
T ss_dssp CEEECCCSCCCSSCHHHHHHHHTCSHHHHHHHHTTC
T ss_pred ceEEEeCCCCCCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 788999999999999999999999999999999763
No 7
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=2e-116 Score=1028.63 Aligned_cols=618 Identities=52% Similarity=0.894 Sum_probs=560.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCC
Q 005021 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV 167 (719)
Q Consensus 88 l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~ 167 (719)
|+++|++||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++++|+. +
T Consensus 6 ~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~-~ 84 (673)
T 1r9j_A 6 IEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYN-L 84 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCS-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCC-C
Confidence 778999999999999999999999999999999999999999999999999999999999999999999999999982 3
Q ss_pred ChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH
Q 005021 168 QEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247 (719)
Q Consensus 168 ~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~ 247 (719)
+.++|++|||++|.++|||++.++||+++++|++|+|++.|+|+|+|.++++++||+++++..+++|||++|||+++||+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 89999999999999999999888999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE--------------------------
Q 005021 248 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV-------------------------- 300 (719)
Q Consensus 248 ~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v-------------------------- 300 (719)
+|||+++|++++|+|||+|||||+++|++++.....+++.++|++|||+++ .|
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI 244 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMI 244 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCCccccchhhccCHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEE
Confidence 999999999999999999999999999999976567899999999999998 44
Q ss_pred --eeeecCCCccccccccccCCCCCHHHHHHHHHHcCC-CCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCc
Q 005021 301 --TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYP 377 (719)
Q Consensus 301 --~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~-~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 377 (719)
+|.+|+|.+ .++...+|+.+++.++++.++++++| +..+|.+|+++.++|+....+|...++.|++.+.+|++.+|
T Consensus 245 ~~~T~kg~G~~-~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P 323 (673)
T 1r9j_A 245 VQTTTIGFGSS-KQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFP 323 (673)
T ss_dssp EEECCTTTTST-TTTSGGGTSSCCCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred EEecccccccc-cCCCcccccCCCCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhCh
Confidence 788999988 77788999999999999999999999 56789999999888876546677788899999999988888
Q ss_pred hhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccc--cccCcccCC
Q 005021 378 EEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKM--FGDFQKDTP 455 (719)
Q Consensus 378 ~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g--~~~f~~~~~ 455 (719)
+....+.+...+++|..|...+|.| .++.++|++++++|.++++++|+++++++|+++|+++..++ ...|++++|
T Consensus 324 ~~~~~~~~~~~~~~p~~~~~~~p~~---~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~ 400 (673)
T 1r9j_A 324 AEGAAFVAQMRGELPSGWEAKLPTN---SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK 400 (673)
T ss_dssp HHHHHHHHHHTTCCCTTTGGGSCCC---CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT
T ss_pred hHHHHHHHHhcCCCCchhhhhcccc---ccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC
Confidence 8777777777788888887777877 34689999999999999999999999999998776654433 445764379
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|+||||+||+||+|+++|+|||++| |++||+.+|++|++|+++|||+.|++++||+|+++|+|+++|+||+|||++||+
T Consensus 401 ~~R~id~GIaE~~~~~~a~GlA~~G-G~~P~~~~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edl 479 (673)
T 1r9j_A 401 EGRYIRFGVREHAMCAILNGLDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELV 479 (673)
T ss_dssp TCCEEECCSCHHHHHHHHHHHHHHS-SCEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred CCCeEecCccHHHHHHHHHHHHhcC-CCEEEEEehHHHHHHHHHHHHHHHhcCCCEEEEEECCccCcCCCCcccCCHHHH
Confidence 9999999999999999999999995 279999999999999999999999999999999999999999999999999999
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCH
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGS 615 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~ 615 (719)
++||+|||++|++|+|++|++.++++|++..++|++||++|++.+.++.+..+.+++|+|++++. +.+||+||++|+
T Consensus 480 a~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~Ga~vl~~g---~~~dv~lia~G~ 556 (673)
T 1r9j_A 480 AALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHGAYSVVDV---PDLQLVIVASGS 556 (673)
T ss_dssp HHHHHSTTCEEECCSSHHHHHHHHHHHHHCTTCCEEEECCSSEECCCTTCCHHHHHTSCEEEECC---TTCSEEEEECGG
T ss_pred HHHcCCCCCEEEeCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCcccccccCCCEEEeeC---CCCCEEEEEech
Confidence 99999999999999999999999999997558999999999988876654333578898766542 128999999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCCC
Q 005021 616 ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 695 (719)
Q Consensus 616 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~g 695 (719)
++++|++|+++|+++ |+++|||++|++|||+++..|+..+++.... +|++|++...||+++++ .++|+|.|+.+|
T Consensus 557 ~v~~al~Aa~~L~~~-i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~-vv~vE~~~~~g~~~~v~---~~~g~d~f~~sg 631 (673)
T 1r9j_A 557 EVSLAVDAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVP-VVSVEAYVSFGWEKYSH---AHVGMSGFGASA 631 (673)
T ss_dssp GHHHHHHHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCCTTGGGTCS---EEESCSSCCCSS
T ss_pred hHHHHHHHHHHHHhc-CCEEEEeCCCCchhhcccHHHHHHHhccCCe-EEEEeCCCccchHHhcC---ceEEeccCCCCC
Confidence 999999999999988 9999999999999999976666667765544 69999999999998874 348999999999
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 696 PAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 696 ~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+.++|+++||+|+++|+++|+++|
T Consensus 632 ~~~~L~~~~g~~~~~I~~~i~~~l 655 (673)
T 1r9j_A 632 PAGVLYKKFGITVEEVVRTGRELA 655 (673)
T ss_dssp CHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999998764
No 8
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=1.1e-116 Score=1032.10 Aligned_cols=625 Identities=51% Similarity=0.870 Sum_probs=562.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCC
Q 005021 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV 167 (719)
Q Consensus 88 l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~ 167 (719)
|+++|++||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++|+|+. +
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~-~ 82 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYD-L 82 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCS-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCC-C
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999982 4
Q ss_pred ChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH
Q 005021 168 QEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247 (719)
Q Consensus 168 ~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~ 247 (719)
+.++|++|||++|+++|||++.++||+++++|++|+|++.|+|+|+|.++++.+||+++.++.+++|||++|||+++||+
T Consensus 83 ~~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~ 162 (669)
T 2r8o_A 83 PMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGI 162 (669)
T ss_dssp CHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchH
Confidence 89999999999999999999888999999999999999999999999999999999888777789999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE--------------------------
Q 005021 248 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV-------------------------- 300 (719)
Q Consensus 248 ~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v-------------------------- 300 (719)
+|||+++|++++|+|||+|+|||+|+|+++++....+++.++|++|||+++ .|
T Consensus 163 ~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 242 (669)
T 2r8o_A 163 SHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLM 242 (669)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcEeccccccccCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999999999999999999999999999886667889999999999999 76
Q ss_pred -eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchh
Q 005021 301 -TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 379 (719)
Q Consensus 301 -~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (719)
+|.+|+|.+..++...+|+.+++.++++.++++++|+..+|+++.++...|+.. .+|+..+..|++.+.+|++.+|+.
T Consensus 243 ~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~ 321 (669)
T 2r8o_A 243 CKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAK-EAGQAKESAWNEKFAAYAKAYPQE 321 (669)
T ss_dssp EECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred EEeEeccCcCCcCCCCcccCCCCCHHHHHHHHHHcCCCcccccCCHHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhChHH
Confidence 788999988767778999999999999999999999878999998887777532 445666778999999898888987
Q ss_pred hhhhhhhhcCCCCCcccccCCCC----CCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC
Q 005021 380 AAEFKSISSGQLPAGWEKALPTY----TPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP 455 (719)
Q Consensus 380 ~~~~~~~~~g~~p~~~~~~~~~~----~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~ 455 (719)
...+.+.+.+.+|..|...+|+| ....++.++|++++++|.++++.+|+++++++|+++|+++.++++..|++ +|
T Consensus 322 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~-~~ 400 (669)
T 2r8o_A 322 AAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINE-DA 400 (669)
T ss_dssp HHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTT-CT
T ss_pred HHHHHHHhcccCChhhhhhhHHHhhhhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccc-cC
Confidence 77776666677786665444444 11234688999999999999999999999999998887766566778976 89
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|+||||+||+||+|+++|+|||++| |++||+.+|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||+
T Consensus 401 p~R~id~GIaE~~~v~~a~GlA~~g-G~~P~~~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edl 479 (669)
T 2r8o_A 401 AGNYIHYGVREFGMTAIANGISLHG-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV 479 (669)
T ss_dssp TCSEEECCSCHHHHHHHHHHHHHHS-SCEEEEEEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred CCCeeecchhHHHHHHHHHHHHHcC-CCeEEEeehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHH
Confidence 9999999999999999999999994 279999999999999999999999999999999999999999999999999999
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCCCCCC-CCEEEEE
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNK-PDVILIG 612 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~~~~g-~dvtIva 612 (719)
++||+||||+|++|+|++|++.+|++|++..++|+|||++|+..+.++... .+.+++|+|.+++.. | +|++||+
T Consensus 480 a~lr~iP~l~V~~Pad~~E~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~~~G~~vl~~~~---g~~dv~iva 556 (669)
T 2r8o_A 480 ASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCA---GQPELIFIA 556 (669)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEECCCCCCHHHHHHGGGSCEEEECCS---SSCSEEEEE
T ss_pred HHhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCCccchhhhccCCCEEEeccC---CCCCEEEEE
Confidence 999999999999999999999999999975589999999999888765432 123778988766521 4 8999999
Q ss_pred eCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCC
Q 005021 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 692 (719)
Q Consensus 613 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~ 692 (719)
+|+++++|++||++|+++||+++|||++|++|||++...|++++++++.+.+|++|++...||++++..+..++|+|.|+
T Consensus 557 ~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~~~~~~~~~ig~d~fg 636 (669)
T 2r8o_A 557 TGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFG 636 (669)
T ss_dssp CGGGHHHHHHHHHHHHHHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHHHHTTSSEEEEECSCC
T ss_pred ECHHHHHHHHHHHHHHhcCCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCchhhHHHHhcCCCeEEEcCCCC
Confidence 99999999999999999999999999999999999987777888887533469999999999999987666789999999
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 693 ASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 693 ~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.+|+.++|+++||||+++|+++|+++|
T Consensus 637 ~sg~~~~l~~~~Gl~~~~I~~~~~~~~ 663 (669)
T 2r8o_A 637 ESAPAELLFEEFGFTVDNVVAKAKELL 663 (669)
T ss_dssp CSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 9
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=1.3e-115 Score=1023.87 Aligned_cols=621 Identities=53% Similarity=0.882 Sum_probs=560.2
Q ss_pred HHHH-HHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCC
Q 005021 87 LVEK-SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (719)
Q Consensus 87 ~l~~-la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~ 165 (719)
.|++ +|++||.++++++.++++||+|++||++||+++||+. |+|||+||+|++|||||||+||++|++|++++++|+.
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~-~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~ 84 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYD 84 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHT-CCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHh-CCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCC
Confidence 3777 9999999999999999999999999999999999999 9999999999999999999999999999999999982
Q ss_pred CCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh
Q 005021 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (719)
Q Consensus 166 ~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (719)
++.++|++|||++|.++|||++ ++||+++++|++|+|++.|+|+|+|.++++++||+++.++.+++|||++|||+++|
T Consensus 85 -~~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~e 162 (680)
T 1gpu_A 85 -LSIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQE 162 (680)
T ss_dssp -CCHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHS
T ss_pred -CCHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccch
Confidence 4899999999999999999998 89999999999999999999999999999999999887778999999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE------------------------
Q 005021 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV------------------------ 300 (719)
Q Consensus 246 G~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v------------------------ 300 (719)
|++|||+++|++++|+|+|+|+|||+|+|+++++....+++.++|++|||+++ .|
T Consensus 163 G~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~ 242 (680)
T 1gpu_A 163 GISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPT 242 (680)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCE
T ss_pred hhHHHHHHHHHHhCCCcEEEEEECCCceEecccccccCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHCCCCCE
Confidence 99999999999999999999999999999999986567889999999999998 43
Q ss_pred ----eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCC-CCCCCCcHHHHHHHHHH-hhcchhHHHHHHHHHhhhhh
Q 005021 301 ----TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWP-YEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEYEK 374 (719)
Q Consensus 301 ----~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~-~~~~~~~~~v~~~~~~~-~~~g~~~~~~~~~~~~~~~~ 374 (719)
+|.+|+|.+ .++...+|+.+++.++++..+++++|+ ..+|.++++++++|... ..+|+..+..|++.+.+|.+
T Consensus 243 lI~~~T~kg~G~~-~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 321 (680)
T 1gpu_A 243 LIKMTTTIGYGSL-HAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQK 321 (680)
T ss_dssp EEEEECCTTTTST-TTTSGGGSSSCCCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecccccc-cCCCCccCCCCCCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 688899988 666788999999999999999999995 66899998888888642 24566677889999988887
Q ss_pred cCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCccc-
Q 005021 375 KYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKD- 453 (719)
Q Consensus 375 ~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~- 453 (719)
.+|+...++.+...+++|..|...+|.|....++.+||++++++|.++++++|+++++++|++.|+++.++|+..|++.
T Consensus 322 ~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~ 401 (680)
T 1gpu_A 322 KFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPS 401 (680)
T ss_dssp HCHHHHHHHHHHHTTCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTT
T ss_pred hChHHHHHHHHHhcccCCchhhhhchhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccccccccccc
Confidence 8888777777777888888887777877423356899999999999999999999999999988777666666778642
Q ss_pred ----CCCCCccccccccchHHHHHHHHHhcCCCCc-cEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCC
Q 005021 454 ----TPEERNVRFGVREHGMGAICNGIALHSPGLI-PYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT 528 (719)
Q Consensus 454 ----~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~-Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~T 528 (719)
+||+||||+||+||+|+++|+|||++|. ++ ||+.+|++|++|+++|||+.|++++||+|+++|+|+++|+||+|
T Consensus 402 ~~~~~~p~R~~d~gIaE~~~vg~a~GlA~~Gg-~~~P~~~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~t 480 (680)
T 1gpu_A 402 SGSGNYSGRYIRYGIREHAMGAIMNGISAFGA-NYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPT 480 (680)
T ss_dssp TSSEETTCCEEECCSCHHHHHHHHHHHHHHCT-TCEEEEEEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTT
T ss_pred ccccCCCCceecCCccHHHHHHHHHHHHhcCC-CceEEEeehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCc
Confidence 6999999999999999999999999983 69 99999999999999999999999999999999999999999999
Q ss_pred CCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCE
Q 005021 529 HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDV 608 (719)
Q Consensus 529 Hq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dv 608 (719)
||++||+++||+||||+|++|+|++|++.+|++|++..++|++||++|+.+|.++.+....+++|++++++. +++||
T Consensus 481 Hq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~vl~~g---~~~dv 557 (680)
T 1gpu_A 481 HQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYVLQDV---ANPDI 557 (680)
T ss_dssp TCCSSHHHHHHTSSSCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSCBCCCTTCCHHHHTTSCEEEECC---SSCSE
T ss_pred cCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCcchhhccCCCEEEecC---CCCCE
Confidence 999999999999999999999999999999999997548999999999998877654333377898766542 12899
Q ss_pred EEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEee
Q 005021 609 ILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGI 688 (719)
Q Consensus 609 tIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~ 688 (719)
|||++|+||++|++||++|+++||+++|||++|++|||++...|+++|++++.+. |++|++...||++++. ..+|+
T Consensus 558 tiva~G~~v~~al~Aa~~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v~---~~~gv 633 (680)
T 1gpu_A 558 ILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYAH---QSFGI 633 (680)
T ss_dssp EEEECTHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTCS---EEECC
T ss_pred EEEEEcHHHHHHHHHHHHHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhcC---cceee
Confidence 9999999999999999999999999999999999999999877778999887555 9999999999998875 23889
Q ss_pred CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 689 DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 689 d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|.|+.+|+.++|+++||||+++|+++|+++|
T Consensus 634 ~~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 664 (680)
T 1gpu_A 634 DRFGASGKAPEVFKFFGFTPEGVAERAQKTI 664 (680)
T ss_dssp CSCCCCSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
No 10
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-114 Score=1012.04 Aligned_cols=618 Identities=52% Similarity=0.904 Sum_probs=557.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCC
Q 005021 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS 166 (719)
Q Consensus 87 ~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~ 166 (719)
+-+++|++||.++++++.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++++|+.
T Consensus 7 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~- 85 (651)
T 2e6k_A 7 LETLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYD- 85 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCC-
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred CChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChh
Q 005021 167 VQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 246 (719)
Q Consensus 167 ~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG 246 (719)
++.++|.+|||++|+++|||++.++||+++++|++|+|++.|+|+|+|.++++++||+++++..+++|||++|||+++||
T Consensus 86 ~~~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG 165 (651)
T 2e6k_A 86 LPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEG 165 (651)
T ss_dssp CCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSH
T ss_pred CCHHHHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchh
Confidence 48999999999999989999988899999999999999999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE-------------------------
Q 005021 247 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV------------------------- 300 (719)
Q Consensus 247 ~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v------------------------- 300 (719)
++|||+++|++++|+|+|+|+|||+|+|+++++....+++.++|++|||+++ .|
T Consensus 166 ~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~ 245 (651)
T 2e6k_A 166 VSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKLDERPTLIA 245 (651)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEECCCcccccccccccCccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 9999999999999999999999999999999986667889999999999999 66
Q ss_pred -eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchh
Q 005021 301 -TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 379 (719)
Q Consensus 301 -~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (719)
+|.+|+|.+ .++...+|+.+++.++++.++++++|+..+|.++.++...|+.. .+|......|++.+.+|...+|+.
T Consensus 246 ~~t~kg~G~~-~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~ 323 (651)
T 2e6k_A 246 VRSHIGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHMDMR-EKGRAWQEAWEKALEAYARAYPDL 323 (651)
T ss_dssp EECCTTTTST-TTTSGGGTSSCCHHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred EEeEeccccc-ccccccccccCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHh-hhchhhHHHHHHHHHHhhhhChHH
Confidence 788999988 77788999999999999999999999888999998877777432 345556778999998888888887
Q ss_pred hhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCc
Q 005021 380 AAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERN 459 (719)
Q Consensus 380 ~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~ 459 (719)
...+.+...+++|. |...+|.| .++.++|++++++|.++++++|+++++++|+++|+++..+++..|++++||+||
T Consensus 324 ~~~~~~~~~~~~p~-~~~~~~~~---~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~ 399 (651)
T 2e6k_A 324 HQELMRRLRGELPP-LPEEPPSF---DKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRY 399 (651)
T ss_dssp HHHHHHHHTTCCCC-CCCSCCCC---CSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCE
T ss_pred HHHHHHHhcCcCCc-hhhhcccc---CccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCce
Confidence 76666666777776 76666666 246899999999999999999999999999987776655566778643799999
Q ss_pred cccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHc
Q 005021 460 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 539 (719)
Q Consensus 460 ~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr 539 (719)
||+||+||+|+++|+|||++| |++||+++|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||+++||
T Consensus 400 i~~gIaE~~~~~~a~GlA~~G-g~~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr 478 (651)
T 2e6k_A 400 LHFGVREHAMGAILNGLNLHG-GYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLR 478 (651)
T ss_dssp EECCSCHHHHHHHHHHHHHHS-SCEEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH
T ss_pred EecCcCHHHHHHHHHHHHHcC-CCEEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhc
Confidence 999999999999999999998 2699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHH
Q 005021 540 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEI 619 (719)
Q Consensus 540 ~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~ 619 (719)
+|||++|++|+|++|++.++++|++..++|++||++|+.+|.++.+....+++|+|.+++. +++|++||++|+++++
T Consensus 479 ~iP~l~V~~Pad~~E~~~~l~~A~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~vl~~g---~~~dv~iva~G~~v~~ 555 (651)
T 2e6k_A 479 AMPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLRGGYVLEDV---EEPQGVLVATGSEVHL 555 (651)
T ss_dssp TSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEEECCSSCBCCCCHHHHGGGGGSSEEEECC---SSCSEEEEECTTHHHH
T ss_pred CCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCCCcchhhhhcCCCEEEeeC---CCCCEEEEEECHHHHH
Confidence 9999999999999999999999997548999999999988876543223577888766542 1489999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCCCCHHH
Q 005021 620 AAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGK 699 (719)
Q Consensus 620 al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~g~~~e 699 (719)
|++|+++|+++||+++|||++|++|||++...|+++++++... +|++|++...||++++. .++|+|.|+.+|+.++
T Consensus 556 al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~-vv~vE~~~~~G~~~~v~---~~ig~d~f~~sg~~~~ 631 (651)
T 2e6k_A 556 ALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPGLP-VVAVEAGASLGWERYAH---KVVALDRFGASAPYPE 631 (651)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCCTTGGGTCS---EEECCCSCCCSCCTTH
T ss_pred HHHHHHHHHhcCCcEEEEecCcCCccccccHHHHHHHhCcCCe-EEEEeCCccCchHHhCC---CEEEeCCCCCCCCHHH
Confidence 9999999999999999999999999999986677888887655 69999999999998874 7899999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 005021 700 IYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 700 l~~~~gl~~e~I~~~i~~~l 719 (719)
|+++||||+++|+++|+++|
T Consensus 632 l~~~~gl~~~~I~~~i~~~l 651 (651)
T 2e6k_A 632 VYERLGFTPERVAEAFLSLV 651 (651)
T ss_dssp HHHHTTCCHHHHHHHHHTTC
T ss_pred HHHHhCCCHHHHHHHHHHhC
Confidence 99999999999999999875
No 11
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.5e-104 Score=920.01 Aligned_cols=570 Identities=27% Similarity=0.389 Sum_probs=486.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
.+.|+++|++||.++++++.++++||+|++||++||+++||+++||+||+||+|++|||||||+||+++++|++|+++|+
T Consensus 10 ~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly~~~~l~G~ 89 (616)
T 3mos_A 10 LQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYAVWAEAGF 89 (616)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHHHHHHHcCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (719)
+ +.++|.+|||++|.++|||++. .|++++++|++|+|++.|+|+|+|.++++. .+++|||++|||+++
T Consensus 90 ~--~~~~l~~~r~~~s~l~ghp~~~-~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~---------~~~~vv~v~GDG~~~ 157 (616)
T 3mos_A 90 L--AEAELLNLRKISSDLDGHPVPK-QAFTDVATGSLGQGLGAACGMAYTGKYFDK---------ASYRVYCLLGDGELS 157 (616)
T ss_dssp S--CGGGGGGTTCTTCSCCSSCCTT-STTCSSCCCSTTCHHHHHHHHHHHHHHTSC---------CSCCEEEEEETGGGG
T ss_pred C--CHHHHHHhccCCCCCCCCCCCC-CCcccccccccCCccHHHHHHHHHHHHhCC---------CCCEEEEEECccccc
Confidence 6 8999999999998889999974 689999999999999999999999987541 258999999999999
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEE-----------------------
Q 005021 245 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWV----------------------- 300 (719)
Q Consensus 245 eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v----------------------- 300 (719)
||++|||+++|++++|+|+++|+|||+|+|++++... ...++.++|++|||+++.|
T Consensus 158 eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~~~~P~lI~ 237 (616)
T 3mos_A 158 EGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKHQPTAII 237 (616)
T ss_dssp SHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSCCSSCEEEE
T ss_pred cCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhcCCCCEEEE
Confidence 9999999999999999999999999999999988653 3567899999999999988
Q ss_pred -eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchh
Q 005021 301 -TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 379 (719)
Q Consensus 301 -~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (719)
+|.+|+|.+..++...||+.+++.++++.++++++.. ..++.. .+.+..++.
T Consensus 238 v~T~kg~G~~~~e~~~~~Hg~~~~~~~~~~~~~~~~~~-----------------~~~~~~----------~~~~~~~~~ 290 (616)
T 3mos_A 238 AKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQ-----------------IQSKKK----------ILATPPQED 290 (616)
T ss_dssp EECCTTTTSTTTTTCSSCTTCCCCHHHHHHHHHHHHHT-----------------CCCCCC----------CCCBCCCCC
T ss_pred EEEecccccccccCchhhcCCCCCHHHHHHHHHHHHHH-----------------HHhhhh----------hCcCccchh
Confidence 6889999988888889999999888877666554210 000100 000000000
Q ss_pred hhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCc
Q 005021 380 AAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERN 459 (719)
Q Consensus 380 ~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~ 459 (719)
.... .....++| ..|+|.. ..+.++|++++++|.+++++||+++++++|++++++ +..|++ +||+||
T Consensus 291 ~~~~-~~~~~~~~-----~~~~~~~-~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~-----~~~~~~-~~p~R~ 357 (616)
T 3mos_A 291 APSV-DIANIRMP-----SLPSYKV-GDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTF-----SEIFKK-EHPDRF 357 (616)
T ss_dssp CCCC-CCSCCCCS-----SCCCCCT-TCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHS-----HHHHHH-HCGGGE
T ss_pred hhhh-hhhccccC-----CCccccc-ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcc-----hhhHHH-hCCCCe
Confidence 0000 00011111 2345543 246889999999999999999999999999976654 245765 899999
Q ss_pred cccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHc
Q 005021 460 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 539 (719)
Q Consensus 460 ~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr 539 (719)
||+||+||+|+++|+|||+.|. .+|++.+|++|++|++|||++.|++++||+++++++|+++|+||+|||++||+++||
T Consensus 358 ~d~gIaE~~~v~~a~G~A~~G~-~~~~~~~f~~Fl~~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~ 436 (616)
T 3mos_A 358 IECYIAEQNMVSIAVGCATRNR-TVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFR 436 (616)
T ss_dssp EECCSCHHHHHHHHHHHHGGGC-CEEEEEEEGGGGGGGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHH
T ss_pred EEcCccHHHHHHHHHHHHHcCC-CCEEEEehHHHHHHHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHhc
Confidence 9999999999999999999994 479999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCC--EEEEEeCHhH
Q 005021 540 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPD--VILIGTGSEL 617 (719)
Q Consensus 540 ~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~d--vtIva~G~~v 617 (719)
++|||+|++|+|++|++.++++|++ .++|++||++|+..|.++.. .+.+++|++.++++ |.| ++||++|+++
T Consensus 437 ~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~~~~-~~~~~~Gka~vl~e----g~d~dv~iva~G~~v 510 (616)
T 3mos_A 437 SVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAIIYNN-NEDFQVGQAKVVLK----SKDDQVTVIGAGVTL 510 (616)
T ss_dssp TSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCCSCT-TCCCCTTCCEEEEC----CSSEEEEEECCTHHH
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCccCCC-cccccCCeEEEEEe----CCCCCEEEEEeCHHH
Confidence 9999999999999999999999996 68999999999988876543 34578898888887 445 9999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhhh----c----CCceEEee
Q 005021 618 EIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV----G----SKGKAIGI 688 (719)
Q Consensus 618 ~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~~----~----~~~~~ig~ 688 (719)
+.|++|+++|+++||+++|||+++++|||++++. +++.+++.. +||+||+... |+++.+ . .++.++|+
T Consensus 511 ~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~--~~~~~~~~~-vvvvEe~~~~GG~G~~v~~~l~~~~~~~v~~~g~ 587 (616)
T 3mos_A 511 HEALAAAELLKKEKINIRVLDPFTIKPLDRKLIL--DSARATKGR-ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAV 587 (616)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHH--HHHHHTTTE-EEEEEEEESTTSHHHHHHHHHTTCTTCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHH--HHHHhcCCE-EEEEcCCCCCcCHHHHHHHHHHhcCCCCEEEEeC
Confidence 9999999999999999999999999999999874 456666223 6999999775 565432 1 24678999
Q ss_pred CcCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 005021 689 DRFGASAPAGKIYKEFGITAEAVITAAK 716 (719)
Q Consensus 689 d~f~~~g~~~el~~~~gl~~e~I~~~i~ 716 (719)
+.|+.+|++++|+++||||+++|+++|+
T Consensus 588 ~~f~~~g~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 588 NRVPRSGKPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp CSCCCCSCHHHHHHHTTCSHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 8899999999999999999999999986
No 12
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=3.8e-93 Score=845.36 Aligned_cols=609 Identities=22% Similarity=0.255 Sum_probs=471.0
Q ss_pred ccCCcHHHHH-HHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCc
Q 005021 80 ETSTDAALVE-KSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152 (719)
Q Consensus 80 ~~~~~~~~l~-~la~~iR~~~~~~v~~~~------~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~ 152 (719)
....+.| |+ ++|++||+++++||.+++ +||+|+++|++||+++||+++|+.+ ++| .+|| ||||+||++
T Consensus 70 ~~p~d~~-l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~-~~~--~~~D-~V~~~GH~s 144 (886)
T 2qtc_A 70 EYPGNLE-LERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRAR-NEQ--DGGD-LVYFQGHIS 144 (886)
T ss_dssp CCCSCHH-HHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCC-CSS--SCCC-EEECCGGGH
T ss_pred CCCchHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCC-CCC--CCCC-EEEEcchhH
Confidence 3345555 66 899999999999999988 8999999999999999999988864 344 6888 999999999
Q ss_pred hHHHHHHHHhCCCCCChhHHhhhhhc--CCCCCCCCCCCCCCC-ccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCcc
Q 005021 153 MLQYALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETPG-IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEI 229 (719)
Q Consensus 153 ~~~Ya~l~l~G~~~~~~~~l~~~r~~--~~~~~g~p~~~~~pg-i~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~ 229 (719)
|++|++++|+|+. +.++|++|||. ++.++|||++.++|+ ++++|||+|+|++.|+|+|+++|++..++. .+.
T Consensus 145 p~~Ya~~~l~Gr~--~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~---~~~ 219 (886)
T 2qtc_A 145 PGVYARAFLEGRL--TQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGL---KDT 219 (886)
T ss_dssp HHHHHHHHHTTSS--CHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTS---CCC
T ss_pred HHHHHHHHHhCCC--CHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhccccc---ccC
Confidence 9999999999985 88999999995 334559999988997 999999999999999999999998654321 122
Q ss_pred CCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEE--------
Q 005021 230 VDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIW-------- 299 (719)
Q Consensus 230 ~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~-------- 299 (719)
.+++|||++||||++||++|||+|+|++++|+|||||||||+|+||++++. ...+++.++|+++||++++
T Consensus 220 ~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~ 299 (886)
T 2qtc_A 220 SKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWD 299 (886)
T ss_dssp TTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHH
T ss_pred CCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHH
Confidence 578999999999999999999999999999999999999999999999975 3567899999999999873
Q ss_pred ------------------------------------------------------------------E-------------
Q 005021 300 ------------------------------------------------------------------V------------- 300 (719)
Q Consensus 300 ------------------------------------------------------------------v------------- 300 (719)
+
T Consensus 300 ~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~ 379 (886)
T 2qtc_A 300 ELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET 379 (886)
T ss_dssp HHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC
T ss_pred HHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc
Confidence 1
Q ss_pred ---------eeeecCCCc-cccccccccCC-CCCHHHHHHHHHHcCCCCC-------CCCCcHHHHHHHHHHhhcchhHH
Q 005021 301 ---------TTTIGFGSP-NKANSYSVHGS-ALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLE 362 (719)
Q Consensus 301 ---------~t~~g~g~~-~~~~~~~~h~~-~l~~~~~~~~~~~l~~~~~-------~~~~~~~v~~~~~~~~~~g~~~~ 362 (719)
+|+||+|.+ ..++...+|+. +++.++++.++++++||.. +|+.|.+....++....+
T Consensus 380 ~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r----- 454 (886)
T 2qtc_A 380 KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQ----- 454 (886)
T ss_dssp CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHH-----
T ss_pred CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchHHHHHHHHH-----
Confidence 688999975 56667889987 7888999999999999752 777765443344322111
Q ss_pred HHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCC----CCCCcchHHHHHHHHHHHHHhhC---CceEEEecC
Q 005021 363 AEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTL---PGLLGGSAD 435 (719)
Q Consensus 363 ~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~----~~~~~~s~r~a~~~~L~~l~~~d---p~iv~~saD 435 (719)
.+.+....|.....+.. ...+|. ++.|. ......++|++|+++|.++++++ |+||++++|
T Consensus 455 ------~~~l~g~~p~~~~~~~~--~~~~p~-----~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd 521 (886)
T 2qtc_A 455 ------RQKLHGYLPSRQPNFTE--KLELPS-----LQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIAD 521 (886)
T ss_dssp ------HHHTTSCSSCCCCSCCS--CCCCCC-----GGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESS
T ss_pred ------HHHhcccCcchhhhhhh--cccCCc-----hhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCc
Confidence 11122122321111100 011221 11121 11245789999999999999988 999999999
Q ss_pred CCC---------CccccccccccCc----------ccCCCCCccccccccchH-H---HHHHHHHhcCCCCccEEEehhh
Q 005021 436 LAS---------SNMTLLKMFGDFQ----------KDTPEERNVRFGVREHGM-G---AICNGIALHSPGLIPYCATFFV 492 (719)
Q Consensus 436 l~~---------s~~~~~~g~~~f~----------~~~~p~R~~d~GIaE~~~-v---g~AaGlA~~G~~~~Pv~~~y~~ 492 (719)
+.. |+.+...+...|. ++.||+||||+||+||+| + ++|+|||++|.+++||+.+|++
T Consensus 522 ~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~ 601 (886)
T 2qtc_A 522 EARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSM 601 (886)
T ss_dssp CSGGGTCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGG
T ss_pred cccccCcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehH
Confidence 542 2222222334453 247899999999999995 5 7999999999447999999999
Q ss_pred h-HHhHHHHHHHH-hhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCc-
Q 005021 493 F-TDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRP- 569 (719)
Q Consensus 493 F-~~ra~dqir~~-a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P- 569 (719)
| +||++|||+.. ++++.+|++.++..+.++|+||+|||+++|+++||+||||+|++|+|++|++.+|++|++..++|
T Consensus 602 F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~ 681 (886)
T 2qtc_A 602 FGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK 681 (886)
T ss_dssp GSHHHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCC
Confidence 9 79999998765 89999999988666666899999999999999999999999999999999999999999755789
Q ss_pred ---EEEEEcCCC--C--CCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC-CCcEEEEecCC
Q 005021 570 ---SILALSRQK--L--PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVS 641 (719)
Q Consensus 570 ---~~irl~r~~--~--~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~ 641 (719)
++||++|++ + |.++....+.+..|.|++++.. ++++||+||++|++|++|++||++|+++ ||+++|||++|
T Consensus 682 ~e~v~i~~~r~~~~~~~p~~~~~~~~~~~gga~vlr~g~-~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~s 760 (886)
T 2qtc_A 682 QENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIE-GSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTS 760 (886)
T ss_dssp CCCCEEEEECCSCCBCCCCCCTTCHHHHHHTCEEEEEEC-CSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSC
T ss_pred CceEEEEEeCCccccCCCCCCcchhhhccCceEEEEecC-CCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCc
Confidence 999999965 4 4444322233533445554310 0137999999999999999999999988 99999999999
Q ss_pred hhhHHHHHHH----------------hhhhhccCCCceEEEEcccc---ccCchhhhc-CCceEEeeCcCCCCCCHHHHH
Q 005021 642 WELFDEQSDA----------------YKESVLPAAVSARVSIEAGS---TFGWEKIVG-SKGKAIGIDRFGASAPAGKIY 701 (719)
Q Consensus 642 l~pld~~~~~----------------~~~sv~~~~~~~vvvvE~~~---~~G~~~~~~-~~~~~ig~d~f~~~g~~~el~ 701 (719)
++|||++++. |.+.+++. .. +|++|++. ..+|.+++. .++.++|+|.|+.+|++++|+
T Consensus 761 l~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~-vVa~ed~~~g~~~~~~~~~~~~~~~~lG~D~Fg~sg~~~~L~ 838 (886)
T 2qtc_A 761 FTELARDGQDCERWNMLHPLETPRVPYIAQVMND-AP-AVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLR 838 (886)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SC-EEEECSSCTHHHHTTGGGCCSSCEEEECCCSCCCCCCHHHHH
T ss_pred CcccchHHHHHhhhcccCccccccHHHHHHhcCC-CC-EEEEEecccchHHHHHHHcCCCCeEEEEeCCCCCCCCHHHHH
Confidence 9999987532 44556655 34 58889853 445667776 677889999999999999999
Q ss_pred HHhCCCHHHHHHHHHHhC
Q 005021 702 KEFGITAEAVITAAKEVC 719 (719)
Q Consensus 702 ~~~gl~~e~I~~~i~~~l 719 (719)
++||||+++|+++|+++|
T Consensus 839 ~~~Gld~e~Iv~~a~~~L 856 (886)
T 2qtc_A 839 HHFEVDASYVVVAALGEL 856 (886)
T ss_dssp HHTTCSHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH
Confidence 999999999999998753
No 13
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.9e-86 Score=773.18 Aligned_cols=537 Identities=23% Similarity=0.294 Sum_probs=428.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCC
Q 005021 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (719)
Q Consensus 86 ~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~ 165 (719)
+.|++++++||.++++++.+ ++||+|+++|+++++++||++ ||| +||+||+|+||++ |+|++++|+
T Consensus 28 ~~l~~l~~~iR~~~~~~~~~-~~Gh~~~~lg~v~l~~aL~~~---~~~------~~D~~v~~~GH~~---y~~~~l~G~- 93 (629)
T 2o1x_A 28 EQLPALTEELRGEIVRVCSR-GGLHLASSLGAVDIITALHYV---LDS------PRDRILFDVGHQA---YAHKILTGR- 93 (629)
T ss_dssp GGHHHHHHHHHHHHHHHHTT-SSSCHHHHHHTHHHHHHHHHH---SCT------TTSEEEESSSTTC---HHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCcCCCchhHHHHHHHHHhh---cCC------CCCeEEecCchHH---HHHHHHhCc-
Confidence 34889999999999999987 899999999999999999986 775 7999999999999 999999994
Q ss_pred CCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh
Q 005021 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (719)
Q Consensus 166 ~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (719)
.+++.++||++|++ |||++.++|++.+++|++|+|++.|+|+|+|.|+++ .+++|||++|||++++
T Consensus 94 ---~~~~~~~r~~~g~~-G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~----------~~~~Vv~v~GDG~~~~ 159 (629)
T 2o1x_A 94 ---RDQMADIKKEGGIS-GFTKVSESEHDAITVGHASTSLTNALGMALARDAQG----------KDFHVAAVIGDGSLTG 159 (629)
T ss_dssp ---GGGGGGTTSTTSCC-SSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHT----------CCCCEEEEEETTGGGS
T ss_pred ---HhHHhCcccCCCCC-CCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhC----------CCCeEEEEEchhhhhc
Confidence 67899999999976 999998899999999999999999999999999886 3789999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh---cch---------------------------------h-H--
Q 005021 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA---FTE---------------------------------N-V-- 286 (719)
Q Consensus 246 G~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~---~~~---------------------------------~-~-- 286 (719)
|++|||||+|+++++ |||+|+|||+|+|+++++.. ... + +
T Consensus 160 G~~~EaL~~A~~~~~-pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~ 238 (629)
T 2o1x_A 160 GMALAALNTIGDMGR-KMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRH 238 (629)
T ss_dssp HHHHHHHHHHHHHCC-SEEEEEEECSBSSSBCCSSHHHHC----------------------------------------
T ss_pred cHHHHHHHHHHhhCC-CEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 999999999999995 79999999999999987521 100 1 1
Q ss_pred ----H--HHHhccCceEE-EEeeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcch
Q 005021 287 ----D--KRFEGLGWHVI-WVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGA 359 (719)
Q Consensus 287 ----~--~~~~a~G~~~~-~v~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~ 359 (719)
. +++++|||+++ .| .|. +.+++...+++......|..+. . .+.+|+
T Consensus 239 ~~~p~~~~~~ea~G~~~~g~v---dG~----------------d~~~l~~al~~A~~~~~P~lI~------v--~t~kg~ 291 (629)
T 2o1x_A 239 FFDPASVNPFAAMGVRYVGPV---DGH----------------NVQELVWLLERLVDLDGPTILH------I--VTTKGK 291 (629)
T ss_dssp -----CCCTTGGGTCEEEEEE---ESS----------------CHHHHHHHHHHHTTSSSEEEEE------E--ECCTTT
T ss_pred hcCcccchHHHhcCCeEEeeE---CCc----------------CHHHHHHHHHHHHhcCCCEEEE------E--EEecCC
Confidence 1 34555555544 22 110 2233333333221111121110 0 112232
Q ss_pred hHHHHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCC
Q 005021 360 TLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASS 439 (719)
Q Consensus 360 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s 439 (719)
.+ .+++.+|..+|... |....... +... ...+++++|+++|.+++++||+++++++|+.++
T Consensus 292 G~---------~~~e~~~~~~H~~~-------~f~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~ 352 (629)
T 2o1x_A 292 GL---------SYAEADPIYWHGPA-------KFDPATGE--YVPS-SAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREG 352 (629)
T ss_dssp TC---------HHHHHCTTGGGSCC-------SBCTTTCC--BCCC-CCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTT
T ss_pred CC---------ChhHcCCcccccCc-------cCCcCcCc--cccc-chHHHHHHHHHHHHHHhhhCcCEEEEeccccCC
Confidence 21 12234454555321 21111000 0011 146899999999999999999999999999755
Q ss_pred ccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecC
Q 005021 440 NMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHD 518 (719)
Q Consensus 440 ~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~ 518 (719)
+. +..|++ +||+||||+||+|++|+++|+|||+.| ++||+++|++|++|++|||+. .|++++||+++++++
T Consensus 353 ~~-----~~~f~~-~~~~r~~~~gIaE~~~~~~a~G~A~~G--~rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~ 424 (629)
T 2o1x_A 353 SG-----LVEFSR-VHPHRYLDVGIAEEVAVTTAAGMALQG--MRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRA 424 (629)
T ss_dssp TT-----CHHHHH-HCGGGEEECCSCHHHHHHHHHHHHHTT--CEEEEEEEHHHHGGGHHHHHHTTTTTTCCCEEEEESB
T ss_pred cC-----hHHHHH-hcCcceEeccccHHHHHHHHHHHHHcC--CEEEEEecHHHHHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 32 356766 899999999999999999999999999 699999999999999999755 699999999999887
Q ss_pred CCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEe
Q 005021 519 SIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIIS 598 (719)
Q Consensus 519 g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~ 598 (719)
|+ +|+||+|||+++|+++||+|||++|++|+|++|++.++++|++ .++|++||++|+.++.++.++.+.+++|++.++
T Consensus 425 g~-~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~-~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~~~~ 502 (629)
T 2o1x_A 425 GI-VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGPFAIRYPRGNTAQVPAGTWPDLKWGEWERL 502 (629)
T ss_dssp BC-CCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHH-SSSCEEEECCSSBCCCCCTTCCCCCCTTCCEEE
T ss_pred cc-CCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEecCCCCCCCcccccccccCCceEEE
Confidence 77 6899999999999999999999999999999999999999997 589999999999876644222345889997777
Q ss_pred cCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC-chh
Q 005021 599 DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG-WEK 677 (719)
Q Consensus 599 ~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G-~~~ 677 (719)
++ |.|++||++|++++.|++|+++|+ +++|||++|++|||++.+. +++.+++ .+|++|++...| |+.
T Consensus 503 ~~----g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~i~--~~~~~~~--~vv~vEe~~~~gG~g~ 570 (629)
T 2o1x_A 503 KG----GDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEMLR--EVGGRAR--ALITVEDNTVVGGFGG 570 (629)
T ss_dssp EC----CSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHHHH--HHHHHCS--EEEEEEEEESSSSHHH
T ss_pred ee----CCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHHHH--HHHhhCC--cEEEEecCCCCCCHHH
Confidence 76 689999999999999999999995 8999999999999998764 3443333 369999998754 654
Q ss_pred h----h-----cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 678 I----V-----GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 678 ~----~-----~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
. + ..++.++|+ |.|+++|+.++|+++||+|+++|+++|++++
T Consensus 571 ~v~~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 622 (629)
T 2o1x_A 571 AVLEALNSMNLHPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELG 622 (629)
T ss_dssp HHHHHHHHTTCCCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3 2 235678999 8999999999999999999999999999864
No 14
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-86 Score=769.10 Aligned_cols=539 Identities=20% Similarity=0.253 Sum_probs=417.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCC
Q 005021 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (719)
Q Consensus 86 ~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~ 165 (719)
+.|++++++||.++++++.+ ++||+|+++|+++++++||+. ||| +||+||||+||++ |++++++|+
T Consensus 26 ~~l~~l~~~iR~~~~~~~~~-~~Gh~~~~lg~~~~~~~l~~~---~~~------~~D~~v~~~gH~~---y~~~~l~G~- 91 (621)
T 2o1s_A 26 ESLPKLCDELRRYLLDSVSR-SSGHFASGLGTVELTVALHYV---YNT------PFDQLIWDVGHQA---YPHKILTGR- 91 (621)
T ss_dssp GGHHHHHHHHHHHHHHHSCG-GGCTHHHHHTTHHHHHHHHHH---SCT------TTSEEEESSSTTC---HHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhh-cCCCcCCChhHHHHHHHHHhc---cCC------CCCEEEEeCchHH---HHHHHHhCC-
Confidence 44889999999999999986 799999999999999999986 775 7999999999999 999999994
Q ss_pred CCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh
Q 005021 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (719)
Q Consensus 166 ~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (719)
.++|.+|||++|+. |||++.++|++.+++|++|+|++.|+|+|+|.++++ .+++|||++|||++++
T Consensus 92 ---~~~~~~~r~~~g~~-g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~----------~~~~Vv~v~GDG~~~~ 157 (621)
T 2o1s_A 92 ---RDKIGTIRQKGGLH-PFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEG----------KNRRTVCVIGDGAITA 157 (621)
T ss_dssp ---GGGGGGTTSTTSCC-SSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHT----------SCCCEEEEEETTGGGS
T ss_pred ---HhhhhcccccCCCC-CCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhC----------CCCeEEEEEchhhhhc
Confidence 68899999999976 999998899999999999999999999999999886 3789999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc------------------chhH---------------------
Q 005021 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF------------------TENV--------------------- 286 (719)
Q Consensus 246 G~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~------------------~~~~--------------------- 286 (719)
|++|||||+|+++++ ||++|+|||+|+|+++++... .+++
T Consensus 158 G~~~EaL~~A~~~~~-pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~ 236 (621)
T 2o1s_A 158 GMAFEAMNHAGDIRP-DMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGM 236 (621)
T ss_dssp HHHHHHHHHHHHHCC-SEEEEEEECC------------------------------------------------------
T ss_pred cHHHHHHHHHHhhCC-CEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhc
Confidence 999999999999995 799999999999998875310 0000
Q ss_pred ---HHHHhccCceEE-EEeeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHH
Q 005021 287 ---DKRFEGLGWHVI-WVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLE 362 (719)
Q Consensus 287 ---~~~~~a~G~~~~-~v~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~ 362 (719)
..+|++|||+++ .| .|. +.+++...+++......|..+. . .+.+|+..
T Consensus 237 ~~p~~~~ea~G~~~~g~v---dG~----------------d~~~l~~al~~A~~~~gP~lI~-----v---~t~kg~G~- 288 (621)
T 2o1s_A 237 VVPGTLFEELGFNYIGPV---DGH----------------DVLGLITTLKNMRDLKGPQFLH-----I---MTKKGRGY- 288 (621)
T ss_dssp --CHHHHHHTTCEEEEEE---ETT----------------CHHHHHHHHHHHHHSCSEEEEE-----E---ECCCTTCC-
T ss_pred cChhhHHHHCCCeEeeee---CCC----------------CHHHHHHHHHHHHHcCCCEEEE-----E---EEecccCC-
Confidence 478899999877 44 121 2334433333211001222110 0 11222211
Q ss_pred HHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccc
Q 005021 363 AEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMT 442 (719)
Q Consensus 363 ~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~ 442 (719)
.+++.+|..+|... |.......+ ........+++++|+++|.+++++||+++++++|+.+++.
T Consensus 289 --------~~~e~~~~~~H~~~-------~f~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~- 351 (621)
T 2o1s_A 289 --------EPAEKDPITFHAVP-------KFDPSSGCL-PKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSG- 351 (621)
T ss_dssp --------CCC----------------------------------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTT-
T ss_pred --------ChhhcCchhccCCC-------CCCCCcCcc-cccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcC-
Confidence 11233333444321 111000001 0011124679999999999999999999999999965532
Q ss_pred cccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecCCCc
Q 005021 443 LLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIG 521 (719)
Q Consensus 443 ~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~g~g 521 (719)
+..|++ +||+||||+||+|++|+++|+|||+.| ++||+++|++|++|++|||+. .|++++||+++++++|+
T Consensus 352 ----~~~~~~-~~~~r~~~~gIaE~~~~~~a~G~A~~G--~rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~- 423 (621)
T 2o1s_A 352 ----MVEFSR-KFPDRYFDVAIAEQHAVTFAAGLAIGG--YKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGI- 423 (621)
T ss_dssp ----CHHHHH-HCTTTEEECCSCHHHHHHHHHHHHHTT--CEEEEEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBC-
T ss_pred ----hHHHHH-hCCCceEecCcCHHHHHHHHHHHHHCC--CEEEEEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCcc-
Confidence 356766 899999999999999999999999999 699999999999999999755 69999999999988777
Q ss_pred cCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCC
Q 005021 522 LGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNS 601 (719)
Q Consensus 522 ~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~ 601 (719)
+|+||+|||+++|+++||++||++|++|+|++|++.++++|++..++|++||++|+.++..+.+..+.+++|++.++++
T Consensus 424 ~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~~~~~~- 502 (621)
T 2o1s_A 424 VGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRR- 502 (621)
T ss_dssp CCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEEECCSSBCCCCCCCCCCCCCTTCCEEEEC-
T ss_pred CCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcCCCCEEEEeCCCCCCCCCCCccccccCCceEEeec-
Confidence 6889999999999999999999999999999999999999997448999999999987654321115588999777776
Q ss_pred CCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC-chhh--
Q 005021 602 SGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG-WEKI-- 678 (719)
Q Consensus 602 ~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G-~~~~-- 678 (719)
|.|++||++|++++.|++| ++||+++|||++|++|||++.+. +++.+++ .+|++|++...| |+..
T Consensus 503 ---g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~~i~--~~~~~~~--~vv~vEe~~~~gg~g~~v~ 570 (621)
T 2o1s_A 503 ---GEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEALIL--EMAASHE--ALVTVEENAIMGGAGSGVN 570 (621)
T ss_dssp ---CSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHHHHH--HHHHHCS--EEEEEEEEESTTSHHHHHH
T ss_pred ---CCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHHHHH--HHHccCC--eEEEEECCCCCCCHHHHHH
Confidence 6899999999999999999 45899999999999999998764 3443333 369999998754 6543
Q ss_pred --h-----cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 679 --V-----GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 679 --~-----~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+ ..++.++|+ |.|+++|+.++|+++||+|+++|+++|+++|
T Consensus 571 ~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~i~~~l 619 (621)
T 2o1s_A 571 EVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619 (621)
T ss_dssp HHHHHTTCCCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 2 245678999 8999999999999999999999999998864
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=4.3e-80 Score=720.16 Aligned_cols=570 Identities=18% Similarity=0.241 Sum_probs=433.5
Q ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCc-EEEeCCCCchHHHHHHHHhCCC-----CCC--hhH
Q 005021 100 VDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHLAGYD-----SVQ--EDD 171 (719)
Q Consensus 100 ~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr-~Ils~GH~~~~~Ya~l~l~G~~-----~~~--~~~ 171 (719)
.++|.++++||+|+++|+++| ++++..+++.+ +||| ||+|+||++|++|+.++|.|++ +++ .++
T Consensus 74 ~d~vk~a~sGH~G~~~g~a~i-y~~~~~~~~~~-------~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~ 145 (845)
T 3ahc_A 74 RDDVKHRLVGHWGTTPGLNFL-LAHINRLIADH-------QQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAG 145 (845)
T ss_dssp GGGBCSSCCSCCTTHHHHHHH-HHHHHHHHHHH-------TBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHH
T ss_pred HHHhhhcCCCCCCCCHHHHHH-HHHHHHhcccC-------CCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHH
Confidence 455678899999999999999 66776666653 8999 8999999999999999999973 233 578
Q ss_pred Hhh-hhhcCCC---CCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH
Q 005021 172 LKN-FRQWGSK---TPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247 (719)
Q Consensus 172 l~~-~r~~~~~---~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~ 247 (719)
|++ |||+ +. ++|||.+ ++||++.+||+|||||+.|+|||+ +++ +.+|||++||||+++|.
T Consensus 146 Lk~lfrqf-s~~gg~pgHp~~-~tpGve~~tG~LGqGls~AvG~A~---------~~~-----~~~v~~~~GDGe~e~Gs 209 (845)
T 3ahc_A 146 LQKFFRQF-SYPGGIPSHFAP-ETPGSIHEGGELGYALSHAYGAVM---------NNP-----SLFVPCIIGDGEAETGP 209 (845)
T ss_dssp HHHHHHHB-TCTTSBCSSCCT-TSTTCSCCCSSTTCHHHHHHHHHT---------TCT-----TCEEEEEEETTGGGSHH
T ss_pred HHHHHHhc-cCCCCCCCCCCC-CCCCeecCCCCccchHhHHhhhhh---------cCC-----CCeEEEEECCCchhhhc
Confidence 877 7877 44 8899975 799999999999999999999994 233 68999999999999999
Q ss_pred ---HHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEE-EE---------------------
Q 005021 248 ---ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVI-WV--------------------- 300 (719)
Q Consensus 248 ---~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~-~v--------------------- 300 (719)
.||+.++|..++|+||++|+|+|+++|++++.. +..+++.+||++|||+++ .|
T Consensus 210 LAg~wea~~~~~~~~l~nl~~i~D~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~ 289 (845)
T 3ahc_A 210 LATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFET 289 (845)
T ss_dssp HHHHGGGGGSCCTTTSCEEEEEEEECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHH
T ss_pred chhhhHHhhhhhhhcCCCEEEEEECCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999974 457899999999999987 22
Q ss_pred ---------------------------eeeecC-------CCccccccccccCCCCCH--HHHHHHHHHcCC--CCCC--
Q 005021 301 ---------------------------TTTIGF-------GSPNKANSYSVHGSALGA--KEVDATRKNLGW--PYEP-- 340 (719)
Q Consensus 301 ---------------------------~t~~g~-------g~~~~~~~~~~h~~~l~~--~~~~~~~~~l~~--~~~~-- 340 (719)
+|+||+ |.+ .+++..+|+.|++. ++.+.+++.++| +.+|
T Consensus 290 ~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~~-~eg~~~~H~~pl~~~~~~~~~~~~l~~wl~~~~p~e 368 (845)
T 3ahc_A 290 IFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKK-TEGSWRAHQVPLASARDTEEHFEVLKGWMESYKPEE 368 (845)
T ss_dssp HHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTEE-CTTSGGGSSCSCTTTTTCHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCcc-cCCCccccCCCCCCcccCHHHHHHHhhhccCCCchh
Confidence 566777 764 57788999999876 345555555555 4444
Q ss_pred -CCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCC---CCC--------CCCc
Q 005021 341 -FHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPT---YTP--------ESPA 408 (719)
Q Consensus 341 -~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~---~~~--------~~~~ 408 (719)
|++|.+++..|.....+|.. .+ ..+|... .|+++..+ .+|. |.. +..+
T Consensus 369 lF~~~~~~~~~~~~~~~~g~~----------r~-~~~P~~~-------~g~l~~~~--~lp~~~~~~~~~~~~~~~g~~~ 428 (845)
T 3ahc_A 369 LFNADGSIKDDVTAFMPKGEL----------RI-GANPNAN-------GGVIREDL--KLPELDQYEVTGVKEYGHGWGQ 428 (845)
T ss_dssp TBCTTSCBCHHHHTTSCCGGG----------ST-TTCGGGG-------GGGTCCCC--CCCCGGGGCCTHHHHHCTTEEE
T ss_pred ccCCchHHHHHHHHhCcchHh----------Hh-hhCHHhc-------CCcCcccc--CCCChHhhhccccccccCCccc
Confidence 77777666666543333330 11 1344432 12222222 1222 211 1123
Q ss_pred chHHHHHHHHHHHHHhhCCc-eEEEecCCCCCccccc--cc-----cccCc--c----cCCCCCccccccccchHHHHHH
Q 005021 409 EATRNLSQTCLNALAKTLPG-LLGGSADLASSNMTLL--KM-----FGDFQ--K----DTPEERNVRFGVREHGMGAICN 474 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~-iv~~saDl~~s~~~~~--~g-----~~~f~--~----~~~p~R~~d~GIaE~~~vg~Aa 474 (719)
...+.+++++|.++++.+|+ ++++++|+.+|+.+.. +. ..+|. . ..+.+|||+ ||+||+|+++++
T Consensus 429 ~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~ 507 (845)
T 3ahc_A 429 VEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLE 507 (845)
T ss_dssp ECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHH
Confidence 34456678999999999999 9999999998887642 22 11121 0 012289999 999999999999
Q ss_pred HHHhcCCCCccEEEehhhhH---HhHHHH----HHHH-hhh----cC-CEEEEEecCCCccCCCCCCCCChhhhh--HHc
Q 005021 475 GIALHSPGLIPYCATFFVFT---DYMRAA----IRIS-ALC----EA-GVIYVMTHDSIGLGEDGPTHQPIEHLA--SFR 539 (719)
Q Consensus 475 GlA~~G~~~~Pv~~~y~~F~---~ra~dq----ir~~-a~~----~~-pV~~v~~~~g~g~g~dG~THq~~edia--~lr 539 (719)
|||++|+ +||+.+|++|+ +||++| ||+. +++ +. +|++++||+++++|+||+|||++|++. .++
T Consensus 508 Glal~G~--~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~ 585 (845)
T 3ahc_A 508 AYLLTGR--HGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINK 585 (845)
T ss_dssp HHHHTTC--EEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGG
T ss_pred HHHhcCC--CCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHh
Confidence 9999995 89999888888 799999 9998 765 45 699999999999999999999954444 444
Q ss_pred ---CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCc--cccccccEEEe---cCCCCCCCCEEEE
Q 005021 540 ---AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSI--DGVEKGAYIIS---DNSSGNKPDVILI 611 (719)
Q Consensus 540 ---~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~--~~~~~G~~~i~---~~~~~~g~dvtIv 611 (719)
.+|||+|++|+|++|+..+++.|++..+.|++++++|+++|+++..+. ..+.+|+|++. ++..++.+||+||
T Consensus 586 r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~p~~~~~~~a~~~~~~G~~v~~~as~d~~g~~~DVvLi 665 (845)
T 3ahc_A 586 TFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWVTLDEARAELEAGAAEWKWASNAENNDEVQVVLA 665 (845)
T ss_dssp CCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCEEECSCHHHHHHHHHHSEEECTTTCCCSSTTTCSEEEE
T ss_pred hccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccCCchhhhhhhcCCeEEEEeecccccCCCCCEEEE
Confidence 679999999999999999999999854445555559999998875321 25789999887 2200024899999
Q ss_pred EeCHhH-HHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhcc-CCCceEEEEccccc---cCchhhh----c--
Q 005021 612 GTGSEL-EIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP-AAVSARVSIEAGST---FGWEKIV----G-- 680 (719)
Q Consensus 612 a~G~~v-~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~-~~~~~vvvvE~~~~---~G~~~~~----~-- 680 (719)
++|+++ .+|++||++|+++||+++||||.++.+++.+... ...+. ...+.+|++|++.. .|+++.+ .
T Consensus 666 AtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~--~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV~ell~~r 743 (845)
T 3ahc_A 666 SAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENN--DEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDR 743 (845)
T ss_dssp EESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTC--TTSCCHHHHHHHHCSSSCEEEEESSCHHHHHHHTTTS
T ss_pred EeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCcccc--ccccCHHHhCcEeecCCcceeeecCcHHHHHHHHHhC
Confidence 999775 5699999999999999999999999555443211 01111 01123578888875 4554422 1
Q ss_pred ---CCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 681 ---SKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 681 ---~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.++.++|+.+|+.+|++.+|+++||||.+.|++++++++
T Consensus 744 ~~~~~l~v~G~~d~G~tgtp~eLl~~~gld~~~Iv~~a~~~l 785 (845)
T 3ahc_A 744 PNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLI 785 (845)
T ss_dssp TTGGGEEEECCCSCCCSCCHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred CCCceEEEEeccCCCCCCCHHHHHHHhCcCHHHHHHHHHHHc
Confidence 245688996699999999999999999999999998753
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=1.9e-49 Score=472.64 Aligned_cols=486 Identities=12% Similarity=0.045 Sum_probs=309.8
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCC--cEEEEEeCCC
Q 005021 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNH 271 (719)
Q Consensus 195 ~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~--nli~ivddN~ 271 (719)
.+.+||+|++++.|+|+|+|.++++..+ +..+.++||++|||++ ++|++|||||+|+.++|+ ++|+||+||+
T Consensus 317 ~~~~shlg~~~p~A~G~A~A~~~~~~~~-----~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~ 391 (933)
T 2jgd_A 317 AFNPSHLEIVSPVVIGSVRARLDRLDEP-----SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ 391 (933)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHHTTSSSC-----CGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC
T ss_pred cccCcccccccCHHHHHHHHHHhhcccc-----CCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 3678999999999999999999874221 1147899999999998 999999999999999984 2788888999
Q ss_pred CCccc-chhh-hcchhHHHHHhccCceEEEEe-----------------eeecCCCcccc-ccccccCCCCCH-------
Q 005021 272 ISIDG-DTEI-AFTENVDKRFEGLGWHVIWVT-----------------TTIGFGSPNKA-NSYSVHGSALGA------- 324 (719)
Q Consensus 272 ~sis~-~~~~-~~~~~~~~~~~a~G~~~~~v~-----------------t~~g~g~~~~~-~~~~~h~~~l~~------- 324 (719)
|+|++ +++. .....+.+++++|||+++.|+ .+.+.+|.+.+ ...+.+|+...+
T Consensus 392 ~~ist~~~~~~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~ 471 (933)
T 2jgd_A 392 VGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQP 471 (933)
T ss_dssp ---------------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CC
T ss_pred ccccCCCHHhcccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCH
Confidence 99999 7764 334567888999999999881 12344555443 234444443222
Q ss_pred HHHHHHHHHcCCCCCCCCCcHHHHHHHHH-Hhhcch-------hHHHHHHHHHh-hhh--hc-Cc-----hhhhhhhh--
Q 005021 325 KEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGA-------TLEAEWNAKFA-EYE--KK-YP-----EEAAEFKS-- 385 (719)
Q Consensus 325 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~-------~~~~~~~~~~~-~~~--~~-~p-----~~~~~~~~-- 385 (719)
++++.+++ . .+ .+..|++ +..+|. .+.+++.+.+. +|+ +. .| ..++.+..
T Consensus 472 ~e~~~~~~-~---~d-------Pi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~~~ 540 (933)
T 2jgd_A 472 LMYQKIKK-H---PT-------PRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHE 540 (933)
T ss_dssp TTHHHHHT-S---CC-------HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSSCC
T ss_pred HHHHHHHc-c---CC-------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccccc
Confidence 12222221 0 11 2334433 223332 12222222221 122 11 11 12222110
Q ss_pred ----hhcCCCCCcc----c---ccCC-CCCC----------------CCCcchHHHHHHHHHHHHHhhCCceEEEecCCC
Q 005021 386 ----ISSGQLPAGW----E---KALP-TYTP----------------ESPAEATRNLSQTCLNALAKTLPGLLGGSADLA 437 (719)
Q Consensus 386 ----~~~g~~p~~~----~---~~~~-~~~~----------------~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~ 437 (719)
..+|. +... . ...| .|.. +....++..+++.+|.+++++|++|+++++|++
T Consensus 541 ~~~~~~tg~-~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~ 619 (933)
T 2jgd_A 541 WDEEYPNKV-EMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSG 619 (933)
T ss_dssp TTCCCCCCC-CHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTT
T ss_pred cccCCCCCC-CHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCccC
Confidence 00000 0000 0 0001 1110 011234456778899999999999999999998
Q ss_pred CCccc-------------cccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCc--cEEE-ehhhhHH---hH
Q 005021 438 SSNMT-------------LLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI--PYCA-TFFVFTD---YM 497 (719)
Q Consensus 438 ~s~~~-------------~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~--Pv~~-~y~~F~~---ra 497 (719)
.+++. .+.++..|.+ +| |+||+|+||+|++++|+|+|||+.|. + ||+. +|++|++ |+
T Consensus 620 ~gTfs~rh~v~~d~~~g~~~~~l~~l~~-~~gp~rv~ds~IaE~~~vg~a~G~A~~G~--~~lpv~e~qf~dF~~~AQra 696 (933)
T 2jgd_A 620 RGTFFHRHAVIHNQSNGSTYTPLQHIHN-GQGAFRVWDSVLSEEAVLAFEYGYATAEP--RTLTIWEAQFGDFANGAQVV 696 (933)
T ss_dssp TCTTSCCCCSEECSSSSCEECGGGCSCT-TCCCEEEECCCSCHHHHHHHHHHHHHHCT--TSEEEEEC-CGGGGGGGHHH
T ss_pred CcchhhhhhhcccccCCceeechHHHHH-HcCCCeEEECCcCHHHHHHHHHHHHhcCC--CCCCEEEEEEhhhhcccHHH
Confidence 76432 2345677876 89 99999999999999999999999994 6 9885 8999997 99
Q ss_pred HHHHHH-H-h--hhcCCEEEEEecCCCccCCCCCCCCC--hhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHH-HcCCCcE
Q 005021 498 RAAIRI-S-A--LCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYKVAV-ANRKRPS 570 (719)
Q Consensus 498 ~dqir~-~-a--~~~~pV~~v~~~~g~g~g~dG~THq~--~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~-~~~~~P~ 570 (719)
+|||+. . | .+++||++++.| | ++..|++||+ +|++..++++|||+|++|+|+.|++.+|++++ +..++|+
T Consensus 697 ~DQii~~~~ak~~~~~~vv~~l~~-G--~~g~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pv 773 (933)
T 2jgd_A 697 IDQFISSGEQKWGRMCGLVMLLPH-G--YEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPL 773 (933)
T ss_dssp HHHTTTTHHHHHCCCCCCEEEEEC-C--CSSSCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCE
T ss_pred HHHHHHHHHHHHccCCCEEEEEeC-C--CCCCCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcE
Confidence 999874 4 5 369999999966 3 2335999998 56555556779999999999999999999985 4348999
Q ss_pred EEEEcCCCCCC---CC-----CCCccccccccEEEecCCCCCCCCE--EEEEeCHhHHHHHHHHHHHHhCCCcEEEEecC
Q 005021 571 ILALSRQKLPH---LA-----GTSIDGVEKGAYIISDNSSGNKPDV--ILIGTGSELEIAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 571 ~irl~r~~~~~---~~-----~~~~~~~~~G~~~i~~~~~~~g~dv--tIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
+||+||..+.. ++ .+....+++|++.+++ |.|| +|+++|.+...+++|+++|+++ +++|||++
T Consensus 774 ii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-----g~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~ 846 (933)
T 2jgd_A 774 VVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-----PKGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIE 846 (933)
T ss_dssp EEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-----GGGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEEC
T ss_pred EEEecchhccCCCCcCCccccCCCceeecCCcceEee-----cCcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEee
Confidence 99999865321 11 0012335567665544 4688 5666666656566666888654 89999999
Q ss_pred ChhhHHHHHHHhhhhhccCCC-ceEEEEcccccc-Cchhhhc----------CCceEEee-CcCCC-CCCHHHHHHHhCC
Q 005021 641 SWELFDEQSDAYKESVLPAAV-SARVSIEAGSTF-GWEKIVG----------SKGKAIGI-DRFGA-SAPAGKIYKEFGI 706 (719)
Q Consensus 641 ~l~pld~~~~~~~~sv~~~~~-~~vvvvE~~~~~-G~~~~~~----------~~~~~ig~-d~f~~-~g~~~el~~~~gl 706 (719)
+++|||.+.+. +++.+++. ..+|++||+... |+++++. .++.++|. |.|.+ .|.. +.+-.
T Consensus 847 ~l~Pld~e~i~--~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~~~~v~~vg~~d~~~pa~g~~----~~h~~ 920 (933)
T 2jgd_A 847 QLYPFPHKAMQ--EVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGHM----SVHQK 920 (933)
T ss_dssp EEESCCHHHHH--HHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCTTCEEEEEEECCCSSSSCSCH----HHHHH
T ss_pred ccCCCCHHHHH--HHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhcccCCceEEEecCCcCCCCcCCH----HHHHH
Confidence 99999999764 45655542 146999998875 5544321 24567999 78876 4432 33334
Q ss_pred CHHHHHHHHH
Q 005021 707 TAEAVITAAK 716 (719)
Q Consensus 707 ~~e~I~~~i~ 716 (719)
..+.|++++.
T Consensus 921 ~~~~i~~~a~ 930 (933)
T 2jgd_A 921 QQQDLVNDAL 930 (933)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5677877764
No 17
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=4.1e-49 Score=467.48 Aligned_cols=483 Identities=14% Similarity=0.095 Sum_probs=309.5
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCC--cEEEEEeCCCC
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHI 272 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~--nli~ivddN~~ 272 (719)
..+||+|++++.|+|+|+|.++++...++++....+.++||++|||++ +||.+|||||+|+.|+|+ |+|+||+||++
T Consensus 242 ~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~ 321 (868)
T 2yic_A 242 ANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQI 321 (868)
T ss_dssp CCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSC
T ss_pred CCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCc
Confidence 457899999999999999999875322221112246899999999995 899999999999999998 89999999999
Q ss_pred Ccccchhh-hcchhHHHHHhccCceEEEEe-----------------eeecCCCcccc-ccccccCCCCC-HHHH-HH-H
Q 005021 273 SIDGDTEI-AFTENVDKRFEGLGWHVIWVT-----------------TTIGFGSPNKA-NSYSVHGSALG-AKEV-DA-T 330 (719)
Q Consensus 273 sis~~~~~-~~~~~~~~~~~a~G~~~~~v~-----------------t~~g~g~~~~~-~~~~~h~~~l~-~~~~-~~-~ 330 (719)
++++++.. .......+++++|||+++.|+ .+.+.+|.+++ .+++.+|+... +..+ +. .
T Consensus 322 g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~p~~ 401 (868)
T 2yic_A 322 GFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYM 401 (868)
T ss_dssp BTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHH
T ss_pred ccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCChHH
Confidence 99997653 223446678999999999981 12355666554 23344443221 1111 10 1
Q ss_pred HHHcCCCCCCCCCcHHHHHHHHH-Hhhcch-------hHHHHHHHHHhh-h--hh---c-CchhhhhhhhhhcC--CCCC
Q 005021 331 RKNLGWPYEPFHVPEDVKKHWSR-HVAEGA-------TLEAEWNAKFAE-Y--EK---K-YPEEAAEFKSISSG--QLPA 393 (719)
Q Consensus 331 ~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~-------~~~~~~~~~~~~-~--~~---~-~p~~~~~~~~~~~g--~~p~ 393 (719)
.++.....+| +..|++ +..+|- .+.++..+.+.+ + ++ + .|..+..+.....+ ..+.
T Consensus 402 ~~~~~~~~dP-------i~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~~~~~~~~~~~~~~~t 474 (868)
T 2yic_A 402 YDVIDTKRGS-------RKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLAT 474 (868)
T ss_dssp HHHHTTCCCH-------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCC
T ss_pred HHHHHhCCCH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccCCCC
Confidence 1111111222 222322 112221 111111111110 0 00 1 11001000000000 0000
Q ss_pred c------------ccccCCCCCCCCC---cchHHH----------HHHHHH--HHHHhhCCceEEEecCCCCCccc----
Q 005021 394 G------------WEKALPTYTPESP---AEATRN----------LSQTCL--NALAKTLPGLLGGSADLASSNMT---- 442 (719)
Q Consensus 394 ~------------~~~~~~~~~~~~~---~~s~r~----------a~~~~L--~~l~~~dp~iv~~saDl~~s~~~---- 442 (719)
. .....+.|..... ....|. +++++| ..|++++++|+++++|++.+++.
T Consensus 475 ~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs~rh~ 554 (868)
T 2yic_A 475 AVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHA 554 (868)
T ss_dssp CCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCS
T ss_pred ccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcCcCCccchhhcch
Confidence 0 0000112221111 012232 344443 36689999999999999876441
Q ss_pred ---------cccccccC------cccCCCCCccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhH---HHHHHH
Q 005021 443 ---------LLKMFGDF------QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYM---RAAIRI 503 (719)
Q Consensus 443 ---------~~~g~~~f------~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra---~dqir~ 503 (719)
.+..+..| +++.+|+||+|+||+|++++|+|+|||+.|...+|++ ++|++|++++ +||++.
T Consensus 555 v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~ 634 (868)
T 2yic_A 555 VIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFIS 634 (868)
T ss_dssp SEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTT
T ss_pred hccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHH
Confidence 12334556 5547899999999999999999999999994224444 6899999987 999876
Q ss_pred Hh----hhcCCEEEEEecCCCccCCCCCCCCC--hhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc-CCCcEEEEEcC
Q 005021 504 SA----LCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYKVAVAN-RKRPSILALSR 576 (719)
Q Consensus 504 ~a----~~~~pV~~v~~~~g~g~g~dG~THq~--~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~-~~~P~~irl~r 576 (719)
.+ ++++||++++.|.+ .| +||+|++ +|++..|+++|||+|++|+|+.|++.+|+.++.. .++|++|++||
T Consensus 635 ~~~~k~~~~~~vvi~~p~G~--~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk 711 (868)
T 2yic_A 635 SGEAKWGQLSDVVLLLPHGH--EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPK 711 (868)
T ss_dssp THHHHHCCCCCCEEEEECCC--SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECS
T ss_pred HHHHHhCCCCCEEEEecCCC--CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 43 46999999997654 56 9999997 7888888999999999999999999999998864 24999999998
Q ss_pred CCCCC---CCC-----CCccccccccEEE---ecCCCCCCCCE--EEEEeCHhHHHHHHHHHHHHhCC-CcEEEEecCCh
Q 005021 577 QKLPH---LAG-----TSIDGVEKGAYII---SDNSSGNKPDV--ILIGTGSELEIAAKAAEELRKGG-KAVRVVSFVSW 642 (719)
Q Consensus 577 ~~~~~---~~~-----~~~~~~~~G~~~i---~~~~~~~g~dv--tIva~G~~v~~al~Aa~~L~~~G-i~v~VId~~~l 642 (719)
.-+.. .+. +.....++|++.+ +++ |.|| |||++|.+ ..++++++ +++| ++++|||+++|
T Consensus 712 ~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~----g~dv~r~Ii~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l 784 (868)
T 2yic_A 712 SMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGD----RNKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQL 784 (868)
T ss_dssp GGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCC----GGGCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEECEE
T ss_pred HHhCCCCCCCCccccCCCCceecCCcceeeccccc----CCceeEEEEEecHH-HHHHHHHH--HhCCCCCEEEEEeeec
Confidence 63321 100 0011125677665 344 6899 99999998 67777766 5678 99999999999
Q ss_pred hhHHHHHHHhhhhhccCCCc-eEEEEccccc-cCchhhh-----------cCCceEEee-CcCCCC-CCH
Q 005021 643 ELFDEQSDAYKESVLPAAVS-ARVSIEAGST-FGWEKIV-----------GSKGKAIGI-DRFGAS-APA 697 (719)
Q Consensus 643 ~pld~~~~~~~~sv~~~~~~-~vvvvE~~~~-~G~~~~~-----------~~~~~~ig~-d~f~~~-g~~ 697 (719)
+|||.+++. +++.+++.. -+|++||+.. .|+++++ ..++.++|. |.|.+. |..
T Consensus 785 ~Pld~~~i~--~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~~~~l~~~v~~vg~~d~~~p~~g~~ 852 (868)
T 2yic_A 785 APLPRRRLA--ETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSS 852 (868)
T ss_dssp ESCCHHHHH--HHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHCHHHHTTCEEEEECCCSSSSCSCH
T ss_pred CCCCHHHHH--HHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHHhhhcCCCeEEeccCCcCCCCCCCH
Confidence 999999875 567666541 1477777766 4544321 246778999 788774 443
No 18
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=3.8e-50 Score=434.97 Aligned_cols=291 Identities=13% Similarity=0.078 Sum_probs=245.5
Q ss_pred CcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCcc
Q 005021 407 PAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP 485 (719)
Q Consensus 407 ~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~P 485 (719)
.+.++|++++++|.+++++||+++++++|++. +.+ ++.+..|++ +| |+||||+||+|++|+++|+|||++| ++|
T Consensus 19 ~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~-~gt-~~~~~~~~~-~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~rp 93 (342)
T 2bfd_B 19 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVAF-GGV-FRCTVGLRD-KYGKDRVFNTPLCEQGIVGFGIGIAVTG--ATA 93 (342)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTTT-TCT-TSTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CCE
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEcCccCC-Ccc-cchHHHHHH-HhCCCeEEEcCcCHHHHHHHHHHHHHCC--Cee
Confidence 45789999999999999999999999999973 222 234566866 79 9999999999999999999999999 699
Q ss_pred EEE-ehhhhHHhHHHHHHH-HhhhcC---------CEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHH
Q 005021 486 YCA-TFFVFTDYMRAAIRI-SALCEA---------GVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 554 (719)
Q Consensus 486 v~~-~y~~F~~ra~dqir~-~a~~~~---------pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e 554 (719)
|++ +|++|++|++|||++ .|+++. ||+++++++| +.||+|||+++|+++||++||++|++|+|++|
T Consensus 94 ~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g---~~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e 170 (342)
T 2bfd_B 94 IAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC---VGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQ 170 (342)
T ss_dssp EEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC---CSSCGGGSSCCCHHHHHTSTTCEEECCSSHHH
T ss_pred EEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC---CCCCcchhhHhHHHHHhcCCCcEEEeeCCHHH
Confidence 996 799999999999985 575544 9999997764 35899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEc----CCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC
Q 005021 555 TAGAYKVAVANRKRPSILALS----RQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG 630 (719)
Q Consensus 555 ~~~~l~~a~~~~~~P~~irl~----r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~ 630 (719)
++.++++|++ .++|++||++ |+..+.++.+ .+.+++|++.++++ |.|++||++|++++.|++|+++|+++
T Consensus 171 ~~~~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~~-~~~~~~G~~~v~~~----g~dv~iia~G~~~~~a~~Aa~~L~~~ 244 (342)
T 2bfd_B 171 AKGLLLSCIE-DKNPCIFFEPKILYRAAAEEVPIE-PYNIPLSQAEVIQE----GSDVTLVAWGTQVHVIREVASMAKEK 244 (342)
T ss_dssp HHHHHHHHHH-SSSCEEEEEEGGGTTSCCEEEESS-CCCCCSSCCEEEEC----CSSEEEEECTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCcEEEEecchhcCCCCCCCCCc-ccceeCCceEEecc----CCCEEEEEECHHHHHHHHHHHHHHhh
Confidence 9999999997 5999999887 4433434332 23478898877776 68999999999999999999999998
Q ss_pred -CCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccc-ccCchhhh------------cCCceEEee-CcCCCCC
Q 005021 631 -GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGS-TFGWEKIV------------GSKGKAIGI-DRFGASA 695 (719)
Q Consensus 631 -Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~-~~G~~~~~------------~~~~~~ig~-d~f~~~g 695 (719)
|++++|||+++++|||++.+. +++.+++ . +|++|++. ..||++.+ ..++.++|+ |.|++++
T Consensus 245 ~Gi~v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~ 320 (342)
T 2bfd_B 245 LGVSCEVIDLRTIIPWDVDTIC--KSVIKTG-R-LLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI 320 (342)
T ss_dssp HCCCEEEEECCEEESCCHHHHH--HHHHHHS-C-EEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST
T ss_pred cCCCEEEEeeeecCCCCHHHHH--HHHhcCC-E-EEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH
Confidence 999999999999999998753 4555554 3 58999986 46786532 135678999 6788776
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 696 PAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 696 ~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+++||+|+++|+++|++++
T Consensus 321 ----l~~~~gl~~~~I~~~i~~~l 340 (342)
T 2bfd_B 321 ----FEPFYIPDKWKCYDALRKMI 340 (342)
T ss_dssp ----THHHHSCCHHHHHHHHHHHH
T ss_pred ----HHHHHCcCHHHHHHHHHHHh
Confidence 99999999999999998864
No 19
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=4.2e-50 Score=437.95 Aligned_cols=289 Identities=17% Similarity=0.143 Sum_probs=216.1
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 486 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv 486 (719)
..++|++++++|.+++++||+|+++++|++.++.+ +..+..|++ +| |+||||+||+|++|+++|+|||+.| ++||
T Consensus 50 ~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~-~~~~~~~~~-~~gp~r~~d~gIaE~~~v~~a~G~A~~G--~rpv 125 (369)
T 1ik6_A 50 MANMAKAINMALHEEMERDERVVVLGEDVGKKGGV-FLVTEGLYE-RFGPERVIDTPLNEGGILGFAMGMAMAG--LKPV 125 (369)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEEC----------CTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CEEE
T ss_pred cccHHHHHHHHHHHHHccCCCEEEECCcccccCCc-chhHHHHHH-HhCCCcEEECcccHHHHHHHHHHHHHCC--CeeE
Confidence 46799999999999999999999999999744332 133456766 79 9999999999999999999999999 6999
Q ss_pred EE-ehhhhHHhHHHHHHH-Hhhh--------cCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHH
Q 005021 487 CA-TFFVFTDYMRAAIRI-SALC--------EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 556 (719)
Q Consensus 487 ~~-~y~~F~~ra~dqir~-~a~~--------~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~ 556 (719)
++ +|++|++|++|||++ .|++ ++||+++++++|. .| ||+|||+.+ +++||++|||+|++|+|++|++
T Consensus 126 ~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~-~g-~g~~hs~~~-~a~l~~iPnl~V~~Psd~~e~~ 202 (369)
T 1ik6_A 126 AEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG-TR-GGLYHSNSP-EAIFVHTPGLVVVMPSTPYNAK 202 (369)
T ss_dssp EECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------H-HHHHHTCTTCEEECCCSHHHHH
T ss_pred EEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCC-CC-CCccccccH-HHHHcCCCCcEEEecCCHHHHH
Confidence 97 699999999999987 5877 9999999987773 45 788777665 6999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCC----CCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCC
Q 005021 557 GAYKVAVANRKRPSILALSRQKLP----HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGK 632 (719)
Q Consensus 557 ~~l~~a~~~~~~P~~irl~r~~~~----~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi 632 (719)
.+|++|++ .++|++||+||.... .++.+ ...+++|++.++++ |.|++||++|++++.|++|+++|+ |
T Consensus 203 ~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~~-~~~~~~G~~~v~~~----g~dv~Iia~G~~v~~a~~Aa~~L~--G- 273 (369)
T 1ik6_A 203 GLLKAAIR-GDDPVVFLEPKILYRAPREEVPEG-DYVVEIGKARVARE----GDDVTLVTYGAVVHKALEAAERVK--A- 273 (369)
T ss_dssp HHHHHHHH-SSSCEEEEEEGGGSSCCCEEEECS-SCCCCTTCCEEEEC----CSSEEEEECTTHHHHHHHHHHTSS--S-
T ss_pred HHHHHHHh-CCCCEEEEEehhhhccCCCCcCCC-cccccCCceEEEEc----CCCEEEEEeCHHHHHHHHHHHHhC--C-
Confidence 99999997 799999998875432 22222 23478899877776 689999999999999999999996 8
Q ss_pred cEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhh----h--------cCCceEEee-CcCCCCCCHH
Q 005021 633 AVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKI----V--------GSKGKAIGI-DRFGASAPAG 698 (719)
Q Consensus 633 ~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~----~--------~~~~~~ig~-d~f~~~g~~~ 698 (719)
+++|||++|++|||++.+. +++.+++ . +|++||+.. .||++. + ..++.++|+ |.|+++|+
T Consensus 274 ~v~Vi~~~~l~P~d~~~i~--~~~~~~~-~-vvvvEe~~~~GG~g~~v~~~l~~~~~~~l~~pv~~vg~~d~~~~~~~-- 347 (369)
T 1ik6_A 274 SVEVVDLQTLNPLDFDTVL--KSVSKTG-R-LIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA-- 347 (369)
T ss_dssp CEEEEECCEEETTCHHHHH--HHHHHHC-C-EEEEEEEESTTSHHHHHHHHHHHHSGGGCSSCCEEEEECCCC-------
T ss_pred CeEEEeeeecCCCCHHHHH--HHHhccC-e-EEEEecCCcCCcHHHHHHHHHHhhCccccCCCeEEEcCCCcCCCCHH--
Confidence 9999999999999999753 5666655 3 588899975 667642 2 135678999 89999987
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 005021 699 KIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 699 el~~~~gl~~e~I~~~i~~~l 719 (719)
|++++|||+++|+++|+++|
T Consensus 348 -l~~~~gl~~~~I~~~i~~~l 367 (369)
T 1ik6_A 348 -ADAAYAPTVERIIKAIEYVM 367 (369)
T ss_dssp --------CHHHHHHHHHHHH
T ss_pred -HHHHhCcCHHHHHHHHHHHh
Confidence 99999999999999999864
No 20
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=1e-49 Score=431.04 Aligned_cols=293 Identities=16% Similarity=0.174 Sum_probs=246.6
Q ss_pred CCcchHHHHHHHHHHHHHhhCCceEEEecCCCC--CccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCC
Q 005021 406 SPAEATRNLSQTCLNALAKTLPGLLGGSADLAS--SNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPG 482 (719)
Q Consensus 406 ~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~--s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~ 482 (719)
+...++|++++++|.+++++||+|+++++|++. ++++. +..|++ +| |+||||+||+|++|+++|+|||+.|
T Consensus 12 ~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~---~~~~~~-~~gp~r~~d~gIaE~~~v~~a~G~A~~G-- 85 (341)
T 2ozl_B 12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKV---SRGLWK-KYGDKRIIDTPISEMGFAGIAVGAAMAG-- 85 (341)
T ss_dssp CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTST---TTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--
T ss_pred cccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchh---HHHHHH-HhCCCcEEECchhHHHHHHHHHHHHHCC--
Confidence 345789999999999999999999999999974 33322 345766 89 9999999999999999999999999
Q ss_pred CccEEE-ehhhhHHhHHHHHHHH-h---h-----hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCH
Q 005021 483 LIPYCA-TFFVFTDYMRAAIRIS-A---L-----CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADG 552 (719)
Q Consensus 483 ~~Pv~~-~y~~F~~ra~dqir~~-a---~-----~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~ 552 (719)
++||++ +|++|++|++|||++. | | +++||++++++ | ++|+||+|||...| ++||++|||+|++|+|+
T Consensus 86 ~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G-~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~ 162 (341)
T 2ozl_B 86 LRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G-ASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNS 162 (341)
T ss_dssp CEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S-CCSSCCGGGCCCCH-HHHHTSTTCEEECCCSH
T ss_pred CEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c-CCCCCCcchhhHHH-HHhccCCCCEEEEeCCH
Confidence 699998 7999999999999975 6 3 89999999986 5 57889999944445 99999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEcCCC------C-CCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHH
Q 005021 553 NETAGAYKVAVANRKRPSILALSRQK------L-PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAE 625 (719)
Q Consensus 553 ~e~~~~l~~a~~~~~~P~~irl~r~~------~-~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~ 625 (719)
+|++.++++|++ .++|++||++|+. + |.+++ ..+.+++|++.++++ |.|++||++|+++..|++|++
T Consensus 163 ~e~~~~l~~a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~-~~~~~~~Gk~~v~~~----g~dv~iia~Gs~~~~a~~Aa~ 236 (341)
T 2ozl_B 163 EDAKGLIKSAIR-DNNPVVVLENELMYGVPFEFPPEAQS-KDFLIPIGKAKIERQ----GTHITVVSHSRPVGHCLEAAA 236 (341)
T ss_dssp HHHHHHHHHHHH-SSSCEEEEECHHHHTCEEECCHHHHS-TTCCCCTTCCEEEEC----CSSEEEEECSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCEEEEEChhhhcCCCCcCCccCC-ccccccCCceEEecc----CCCEEEEEeCHHHHHHHHHHH
Confidence 999999999997 5899999999753 2 11122 234578898877776 689999999999999999999
Q ss_pred HHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhh----h---------cCCceEEee-Cc
Q 005021 626 ELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKI----V---------GSKGKAIGI-DR 690 (719)
Q Consensus 626 ~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~----~---------~~~~~~ig~-d~ 690 (719)
+|+++|++++|||+++++|||++.+. +.+.+.+ . +|++|++.. .||++. + ..++.++|+ |.
T Consensus 237 ~L~~~Gi~v~vv~~~~l~P~d~~~i~--~~~~~~~-~-vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~ 312 (341)
T 2ozl_B 237 VLSKEGVECEVINMRTIRPMDMETIE--ASVMKTN-H-LVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADV 312 (341)
T ss_dssp HHHTTTCCEEEEECCEEETCCHHHHH--HHHHHHS-C-EEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSS
T ss_pred HHHhcCCCeEEEeeeeecCCCHHHHH--HHHhcCC-e-EEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCc
Confidence 99999999999999999999998753 4454443 3 699999985 667652 1 235678999 89
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 691 FGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 691 f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+++|+ +|++++|+|+++|+++|++++
T Consensus 313 ~~~~g~--~l~~~~g~~~~~I~~~i~~~l 339 (341)
T 2ozl_B 313 PMPYAK--ILEDNSIPQVKDIIFAIKKTL 339 (341)
T ss_dssp CCCSSH--HHHHTTSCCHHHHHHHHHHHH
T ss_pred CCCCcH--HHHHHhCcCHHHHHHHHHHHh
Confidence 999986 799999999999999998864
No 21
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=1.6e-49 Score=427.39 Aligned_cols=291 Identities=19% Similarity=0.158 Sum_probs=244.7
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
.++|++++++|.+++++||+++++++|++.++.+ +..+..|++ +| |+||||+||+|++|+++|+|||+.| ++||+
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~-~~~~~~~~~-~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~rp~~ 78 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGV-FRATEGLQA-EFGEDRVFDTPLAESGIGGLAIGLALQG--FRPVP 78 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCT-TSTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CEEEE
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCc-chhHHHHHH-HhCCCcEEEcchhHHHHHHHHHHHHhCC--CEEEE
Confidence 5789999999999999999999999999754333 134466766 89 9999999999999999999999999 69999
Q ss_pred E-ehhhhHHhHHHHHHH-Hhh--------hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHH
Q 005021 488 A-TFFVFTDYMRAAIRI-SAL--------CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAG 557 (719)
Q Consensus 488 ~-~y~~F~~ra~dqir~-~a~--------~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~ 557 (719)
+ +|++|++|++|||++ .|+ +++||+++.. +.+.|.+|+||+. +|+++||++||++|++|+|++|++.
T Consensus 79 ~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~ 155 (324)
T 1w85_B 79 EIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP--FGGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKG 155 (324)
T ss_dssp BCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE--ECSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHH
T ss_pred EecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe--ccCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHH
Confidence 7 799999999999986 576 7999999873 3335666776665 8889999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCCCC----CCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc
Q 005021 558 AYKVAVANRKRPSILALSRQKL----PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 633 (719)
Q Consensus 558 ~l~~a~~~~~~P~~irl~r~~~----~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 633 (719)
++++|++ .++|++||+||... +.++.+ ...+++|++.++++ |.|++||++|++++.|++|+++|+++|++
T Consensus 156 ~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~~-~~~~~~Gk~~~~~~----g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~ 229 (324)
T 1w85_B 156 LLISAIR-DNDPVIFLEHLKLYRSFRQEVPEG-EYTIPIGKADIKRE----GKDITIIAYGAMVHESLKAAAELEKEGIS 229 (324)
T ss_dssp HHHHHHH-SSSCEEEEEETTTSSSCCEECCSS-CCCCCTTCCEEEEC----CSSEEEEECTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHH-cCCCEEEEechHhcCCCCCCCCCc-cccccCCceEEEec----CCCEEEEEecHHHHHHHHHHHHHHhcCCC
Confidence 9999997 68999999887543 223222 23478898887776 68999999999999999999999999999
Q ss_pred EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhhh------------cCCceEEee-CcCCCCCCHHH
Q 005021 634 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------------GSKGKAIGI-DRFGASAPAGK 699 (719)
Q Consensus 634 v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~~------------~~~~~~ig~-d~f~~~g~~~e 699 (719)
++|||+++++|||++.+. +++.+++ . +|++|++.. .||++.+ ..++.++|+ |.|+++|+
T Consensus 230 v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~--- 302 (324)
T 1w85_B 230 AEVVDLRTVQPLDIETII--GSVEKTG-R-AIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ--- 302 (324)
T ss_dssp EEEEECSEEESCCHHHHH--HHHHHHS-C-EEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---
T ss_pred EEEEEeeeecCCCHHHHH--HHHhhCC-c-EEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---
Confidence 999999999999998753 4555554 3 588999975 6676522 135678999 89999987
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 005021 700 IYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 700 l~~~~gl~~e~I~~~i~~~l 719 (719)
|+++||||+++|+++|+++|
T Consensus 303 l~~~~gl~~~~I~~~i~~~l 322 (324)
T 1w85_B 303 AESVWLPNFKDVIETAKKVM 322 (324)
T ss_dssp GHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHh
Confidence 99999999999999998864
No 22
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=3.4e-49 Score=425.01 Aligned_cols=290 Identities=17% Similarity=0.126 Sum_probs=243.9
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
.++|++++++|.+++++||+++++++|++.++.+ ++.+..|++ +| |+||||+||+|++|+++|+|||++| ++||+
T Consensus 4 ~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~-~~~~~~~~~-~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~~p~~ 79 (324)
T 1umd_B 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGV-FLVTEGLLQ-KYGPDRVMDTPLSEAAIVGAALGMAAHG--LRPVA 79 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCT-TSTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHHT--CEEEE
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEECCcccccCCc-chhhHHHHH-HhCCCcEEECchhHHHHHHHHHHHHHCC--CEEEE
Confidence 5789999999999999999999999999754433 234466866 89 9999999999999999999999999 69999
Q ss_pred E-ehhhhHHhHHHHHHH-Hhh--------hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHH
Q 005021 488 A-TFFVFTDYMRAAIRI-SAL--------CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAG 557 (719)
Q Consensus 488 ~-~y~~F~~ra~dqir~-~a~--------~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~ 557 (719)
+ +|++|++|++|||++ .|+ +++||+++.. +.+.+.+|++||. +|+++||++||++|++|+|++|++.
T Consensus 80 ~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~ 156 (324)
T 1umd_B 80 EIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP--SGGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKG 156 (324)
T ss_dssp ECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE--ECSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHH
T ss_pred EeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc--CCCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHH
Confidence 7 799999999999987 475 7999999985 2234566776766 8999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCCCC----CCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc
Q 005021 558 AYKVAVANRKRPSILALSRQKL----PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 633 (719)
Q Consensus 558 ~l~~a~~~~~~P~~irl~r~~~----~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 633 (719)
++++|++ .++|++||+||... +.++++ ...+++|++.++++ |.|++||++|++++.|++|+++|+++|++
T Consensus 157 ~l~~a~~-~~~Pv~i~~p~~l~~~~~~~~~~~-~~~~~~Gk~~~~~~----g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~ 230 (324)
T 1umd_B 157 LLKAAIR-DEDPVVFLEPKRLYRSVKEEVPEE-DYTLPIGKAALRRE----GKDLTLICYGTVMPEVLQAAAELAKAGVS 230 (324)
T ss_dssp HHHHHHH-CSSCEEEEEEGGGSSSCCEECCSS-CCCCCTTCCEEEEC----CSSEEEEECGGGHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHh-cCCCEEEEechHhcCCCCCCcCCC-CccccCCcceEEec----CCCEEEEEecHHHHHHHHHHHHHHhcCCC
Confidence 9999997 68999998876432 233332 23478898877776 68999999999999999999999999999
Q ss_pred EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhhh------------cCCceEEee-CcCCCCCCHHH
Q 005021 634 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------------GSKGKAIGI-DRFGASAPAGK 699 (719)
Q Consensus 634 v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~~------------~~~~~~ig~-d~f~~~g~~~e 699 (719)
++|||+++++|||++.+. +++.+++ . +|++|++.. .||++.+ ..++.++|+ |.|+++|
T Consensus 231 v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~---- 302 (324)
T 1umd_B 231 AEVLDLRTLMPWDYEAVM--NSVAKTG-R-VVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA---- 302 (324)
T ss_dssp EEEEECCEEETCCHHHHH--HHHHHHS-C-EEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----
T ss_pred EEEEEeceecCCCHHHHH--HHHhcCC-e-EEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH----
Confidence 999999999999998753 4555554 3 699999975 5676532 235678999 8999998
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 005021 700 IYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 700 l~~~~gl~~e~I~~~i~~~l 719 (719)
|++++|+|+++|+++|+++|
T Consensus 303 l~~~~g~~~~~I~~~i~~~l 322 (324)
T 1umd_B 303 QDKLYLPTVTRILNAAKRAL 322 (324)
T ss_dssp THHHHSCCHHHHHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHh
Confidence 99999999999999998864
No 23
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=4e-48 Score=469.37 Aligned_cols=484 Identities=14% Similarity=0.104 Sum_probs=310.2
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCC--cEEEEEeCCC
Q 005021 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNH 271 (719)
Q Consensus 195 ~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~--nli~ivddN~ 271 (719)
...+||+|++++.|+|+|+|.++++..+++++.+..+.++||++|||++ +||.+|||||+|+.|+|+ |+|+||+||+
T Consensus 486 ~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~ 565 (1113)
T 2xt6_A 486 TANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQ 565 (1113)
T ss_dssp CCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECS
T ss_pred cCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCC
Confidence 3458899999999999999999987544443333357899999999995 999999999999999997 8999999999
Q ss_pred CCcccchhhh-cchhHHHHHhccCceEEEEe-----------------eeecCCCcccc-ccccccCCCCCH-HHH-HH-
Q 005021 272 ISIDGDTEIA-FTENVDKRFEGLGWHVIWVT-----------------TTIGFGSPNKA-NSYSVHGSALGA-KEV-DA- 329 (719)
Q Consensus 272 ~sis~~~~~~-~~~~~~~~~~a~G~~~~~v~-----------------t~~g~g~~~~~-~~~~~h~~~l~~-~~~-~~- 329 (719)
++|++++... ......+++++|||+++.|+ .+.+.+|.+++ .+++.+|+...+ ..+ +.
T Consensus 566 ~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~ 645 (1113)
T 2xt6_A 566 IGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPY 645 (1113)
T ss_dssp CBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHH
T ss_pred cccccCccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCChH
Confidence 9999976532 23345678999999999981 12345565554 234444433211 111 10
Q ss_pred HHHHcCCCCCCCCCcHHHHHHHHH-Hhhcch-------hHHHHHHHHHhh-h--hh---c-CchhhhhhhhhhcC--CCC
Q 005021 330 TRKNLGWPYEPFHVPEDVKKHWSR-HVAEGA-------TLEAEWNAKFAE-Y--EK---K-YPEEAAEFKSISSG--QLP 392 (719)
Q Consensus 330 ~~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~-------~~~~~~~~~~~~-~--~~---~-~p~~~~~~~~~~~g--~~p 392 (719)
..++.....+| +..|++ +..+|- .+.++..+.+.+ + ++ + .|..+..+.....+ ..+
T Consensus 646 ~~~~~~~~~dp-------i~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1113)
T 2xt6_A 646 MYDVIDTKRGS-------RKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLA 718 (1113)
T ss_dssp HHHHHTTCCCH-------HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CC
T ss_pred HHHHHHhcCCH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccCCC
Confidence 11111111222 223322 122221 111111111110 1 00 1 11111000000000 000
Q ss_pred Cc--------c---cccCC-CCCCCCC-c--chHHHHH------HHH------HHHHHhhCCceEEEecCCCCCcc----
Q 005021 393 AG--------W---EKALP-TYTPESP-A--EATRNLS------QTC------LNALAKTLPGLLGGSADLASSNM---- 441 (719)
Q Consensus 393 ~~--------~---~~~~~-~~~~~~~-~--~s~r~a~------~~~------L~~l~~~dp~iv~~saDl~~s~~---- 441 (719)
.. + ....| .|..... . ...|..+ ..+ +..|++++++|+++++|++.+++
T Consensus 719 t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtfs~rh 798 (1113)
T 2xt6_A 719 TAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRH 798 (1113)
T ss_dssp CCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCC
T ss_pred CccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcccCCCccchhcc
Confidence 00 0 00011 1111100 0 1112111 222 33569999999999999987653
Q ss_pred ---------ccccccccC------cccCCCCCccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhH---HHHHH
Q 005021 442 ---------TLLKMFGDF------QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYM---RAAIR 502 (719)
Q Consensus 442 ---------~~~~g~~~f------~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra---~dqir 502 (719)
..+..+..| +++.+|+||+|+||+|++++|+|+|||+.|...+|++ .+|++|++++ +||+.
T Consensus 799 ~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i 878 (1113)
T 2xt6_A 799 AVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFI 878 (1113)
T ss_dssp SSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTT
T ss_pred hheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHH
Confidence 122345556 5546899999999999999999999999994234444 5899999987 99976
Q ss_pred HH----hhhcCCEEEEEecCCCccCCCCCCCCC--hhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc-CCCcEEEEEc
Q 005021 503 IS----ALCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYKVAVAN-RKRPSILALS 575 (719)
Q Consensus 503 ~~----a~~~~pV~~v~~~~g~g~g~dG~THq~--~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~-~~~P~~irl~ 575 (719)
.. +++++||++++.|.+ .| +|++||+ +|++..|+++|||+|++|+|+.|++.+|+.++.. .++|++|++|
T Consensus 879 ~~~~~k~~~~~~vv~~lp~G~--~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~p 955 (1113)
T 2xt6_A 879 SSGEAKWGQLSDVVLLLPHGH--EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTP 955 (1113)
T ss_dssp TTHHHHHCCCCCCEEEEECCC--SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHHSSCCCCEEEEEC
T ss_pred HHHHHHhCCCCCEEEEeCCCC--CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHhccCCCCEEEEec
Confidence 54 356999999996644 56 9999998 5665556999999999999999999999998864 2499999999
Q ss_pred CCCCCC---CCC-----CCccccccccEEE---ecCCCCCCCCE--EEEEeCHhHHHHHHHHHHHHhCC-CcEEEEecCC
Q 005021 576 RQKLPH---LAG-----TSIDGVEKGAYII---SDNSSGNKPDV--ILIGTGSELEIAAKAAEELRKGG-KAVRVVSFVS 641 (719)
Q Consensus 576 r~~~~~---~~~-----~~~~~~~~G~~~i---~~~~~~~g~dv--tIva~G~~v~~al~Aa~~L~~~G-i~v~VId~~~ 641 (719)
|.-+.. .+. +.....++|++.+ +++ |.|| +||++|.+ ..++++++ +++| ++++|||+++
T Consensus 956 k~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~----g~dv~r~iv~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~ 1028 (1113)
T 2xt6_A 956 KSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGD----RNKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQ 1028 (1113)
T ss_dssp SGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCC----STTCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEESE
T ss_pred hHHhCCCCCCCcccccCCCCccccCCcceeeccccC----ccccCEEEEEECHH-HHHHHHHH--HhCCCCCEEEEEeee
Confidence 863321 110 0111125677664 444 6899 99999998 77887776 5678 9999999999
Q ss_pred hhhHHHHHHHhhhhhccCCCc-eEEEEccccc-cCchhhh-----------cCCceEEee-CcCCCC-CCH
Q 005021 642 WELFDEQSDAYKESVLPAAVS-ARVSIEAGST-FGWEKIV-----------GSKGKAIGI-DRFGAS-APA 697 (719)
Q Consensus 642 l~pld~~~~~~~~sv~~~~~~-~vvvvE~~~~-~G~~~~~-----------~~~~~~ig~-d~f~~~-g~~ 697 (719)
|+|||.+++. +++.+++.. -+|++||+.. .|+++++ ..++.++|. |.|.+. |..
T Consensus 1029 l~Pld~~~i~--~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~~~~l~~~~~~vg~~d~~~p~~g~~ 1097 (1113)
T 2xt6_A 1029 LAPLPRRRLA--ETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSS 1097 (1113)
T ss_dssp EESCCHHHHH--HHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHSHHHHTTCEEEEECCCSSSSCSCH
T ss_pred ecCCCHHHHH--HHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHHhhhcCCCeEEEccCCcCCCCCCCH
Confidence 9999999875 567666641 1477877766 4554422 246778999 788774 443
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=1.6e-48 Score=422.10 Aligned_cols=287 Identities=16% Similarity=0.119 Sum_probs=242.4
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
.++|++++++|.+++++||+++++++|++.++.+ +..+..|++ +| |+||||+||+|++|+++|+|||+.| ++||+
T Consensus 5 ~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~-~~~~~~~~~-~~gp~r~~~~gisE~~~~~~a~G~A~~G--~rp~~ 80 (338)
T 1qs0_B 5 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGV-FRCTEGLQT-KYGKSRVFDAPISESGIVGTAVGMGAYG--LRPVV 80 (338)
T ss_dssp CCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCT-TSTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHHT--CEEEE
T ss_pred chHHHHHHHHHHHHHhhCCCEEEECCcccccCCc-chhHHHHHH-HhCCCcEEEccccHHHHHHHHHHHHhCC--CEEEE
Confidence 5789999999999999999999999999754433 234567876 89 9999999999999999999999999 69999
Q ss_pred E-ehhhhHHhHHHHHHH-Hhhhc--------CCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHH
Q 005021 488 A-TFFVFTDYMRAAIRI-SALCE--------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAG 557 (719)
Q Consensus 488 ~-~y~~F~~ra~dqir~-~a~~~--------~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~ 557 (719)
+ +|++|++|++|||++ .|+++ +||++++++++ +.||+|||+++|+++||++||++|++|+|++|++.
T Consensus 81 ~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g---~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~ 157 (338)
T 1qs0_B 81 EIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG---GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKG 157 (338)
T ss_dssp ECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC---SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHH
T ss_pred EeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC---CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHH
Confidence 7 799999999999985 57555 99999997765 57999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEc----CCCCC----------------CCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhH
Q 005021 558 AYKVAVANRKRPSILALS----RQKLP----------------HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSEL 617 (719)
Q Consensus 558 ~l~~a~~~~~~P~~irl~----r~~~~----------------~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v 617 (719)
++++|++ .++|++||+| |+..+ .++.+ .+.+++|++.+.++ |.|++||++|+++
T Consensus 158 ~l~~A~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gk~~~~~~----g~dv~iva~G~~~ 231 (338)
T 1qs0_B 158 LLIASIE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDG-YYTVPLDKAAITRP----GNDVSVLTYGTTV 231 (338)
T ss_dssp HHHHHHH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESS-CCCCCTTCCCEEEC----CSSCEEEECTTHH
T ss_pred HHHHHHh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCCC-CcccccCceeEecC----CCCEEEEEeCHHH
Confidence 9999997 5999999776 65444 23222 23467888766666 6899999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhhh------------cCCce
Q 005021 618 EIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------------GSKGK 684 (719)
Q Consensus 618 ~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~~------------~~~~~ 684 (719)
+.|++|+++ +|++++|||+++++|||++.+. +++.+++ . +|++|++.. .||++.+ ..++.
T Consensus 232 ~~a~~Aa~~---~Gi~v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~ 304 (338)
T 1qs0_B 232 YVAQVAAEE---SGVDAEVIDLRSLWPLDLDTIV--ESVKKTG-R-CVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIE 304 (338)
T ss_dssp HHHHHHHHH---HCCCCEEEECSEEESCCHHHHH--HHHHHHS-C-EEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCE
T ss_pred HHHHHHHHH---cCCCEEEEeecccCCCCHHHHH--HHHhcCC-E-EEEEecCCcCCcHHHHHHHHHHHhcccccCCCeE
Confidence 999999997 5999999999999999998753 4555554 3 699999874 5676532 13467
Q ss_pred EEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 685 AIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 685 ~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
++|+ |.|.+++ |++++|+|+++|+++|++++
T Consensus 305 ~ig~~d~~~~~~----l~~~~g~~~~~I~~~i~~~l 336 (338)
T 1qs0_B 305 RVTGWDTPYPHA----QEWAYFPGPSRVGAALKKVM 336 (338)
T ss_dssp EEECCSSCCCST----THHHHSCCHHHHHHHHHHSS
T ss_pred EEecCCcCCcHH----HHHHHCCCHHHHHHHHHHHh
Confidence 8999 7888876 99999999999999999875
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.92 E-value=1.1e-24 Score=237.79 Aligned_cols=186 Identities=17% Similarity=0.156 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCCh
Q 005021 90 KSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQE 169 (719)
Q Consensus 90 ~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~ 169 (719)
+.+..||.+..+++...++||+|+++|++..-.+++...+.++| +||+||+ +|+. |++++++|+. ..
T Consensus 43 ~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~------~rD~i~~--s~r~---~~~~~~~G~~--~~ 109 (367)
T 1umd_A 43 RDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRP------GFDWVFP--YYRD---HGLALALGIP--LK 109 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCT------TTSEEEC--CTTT---HHHHHHHTCC--HH
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCC------CCcEEEe--CcHH---HHHHHHcCCC--HH
Confidence 46899999999999988899999999999888888887788987 7899986 6887 9999999975 56
Q ss_pred hHHhhhhh------cCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc
Q 005021 170 DDLKNFRQ------WGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 243 (719)
Q Consensus 170 ~~l~~~r~------~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~ 243 (719)
+.|.+|++ .|+..++||... ..++...+|++|++++.|+|+|+|.|+.+ .+.+|||++|||++
T Consensus 110 ~~l~~~~g~~~g~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~a~G~A~a~k~~~----------~~~~vv~i~GDGa~ 178 (367)
T 1umd_A 110 ELLGQMLATKADPNKGRQMPEHPGSK-ALNFFTVASPIASHVPPAAGAAISMKLLR----------TGQVAVCTFGDGAT 178 (367)
T ss_dssp HHHHHHHTBTTCTTTTCSCSSCCCBT-TTTBCCCCSSTTTTHHHHHHHHHHHHHTT----------CCCCEEEEEETGGG
T ss_pred HHHHHHhCCCCCCCCCCCCCCCCccc-ccCcCCCCchhhhhhhHHHHHHHHHHHhC----------CCCeEEEEEccccc
Confidence 77889988 455555787532 33567799999999999999999999875 36789999999999
Q ss_pred ChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEE
Q 005021 244 MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 244 ~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
++|.+||||++|+.++|+ +|+||+||+|+|++++... ...++.+++++|||+++.|
T Consensus 179 ~~G~~~Eal~~A~~~~lp-vi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V 235 (367)
T 1umd_A 179 SEGDWYAGINFAAVQGAP-AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLV 235 (367)
T ss_dssp GSHHHHHHHHHHHHTTCS-EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEE
T ss_pred ccCcHHHHHHHHHHhCcC-EEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEe
Confidence 999999999999999996 9999999999999987643 3467899999999999988
No 26
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.77 E-value=6.3e-18 Score=185.85 Aligned_cols=141 Identities=24% Similarity=0.269 Sum_probs=115.1
Q ss_pred CCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhc------CCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHH
Q 005021 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW------GSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALA 214 (719)
Q Consensus 141 rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~------~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A 214 (719)
.| +|++ .|.. ..+++..|+. ..+.|..|+.. |+..++|+...+ .++...+|++|+|++.|+|+|+|
T Consensus 106 ~D-~v~~-~yR~---~~~~~~~G~~--~~~~l~e~~g~~~g~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~AvG~AlA 177 (400)
T 2bfd_A 106 TD-LVFG-QARE---AGVLMYRDYP--LELFMAQCYGNISDLGKGRQMPVHYGCKE-RHFVTISSPLATQIPQAVGAAYA 177 (400)
T ss_dssp TS-EEEC-CSCC---HHHHHHTTCC--HHHHHHHHHTCTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTHHHHHHHHHHH
T ss_pred CC-EEEe-cCcC---HHHHHHcCCC--HHHHHHHhcCCCCCCCCCCCCCcCCcccc-cCccccCccccccccHHHHHHHh
Confidence 35 5555 5888 5677788974 44556777754 333456776433 34678889999999999999999
Q ss_pred HHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhcc
Q 005021 215 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGL 293 (719)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~ 293 (719)
.++++ .+++|||++|||++++|.+||+||+|+.|+| |+|+||+||+++|++++... ...++.+++++|
T Consensus 178 ~~~~~----------~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~ 246 (400)
T 2bfd_A 178 AKRAN----------ANRVVICYFGEGAASEGDAHAGFNFAATLEC-PIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246 (400)
T ss_dssp HHHHT----------CCCCEEEEEETTGGGSHHHHHHHHHHHHTTC-CEEEEEEECSEETTEEGGGTCSSSTTGGGTGGG
T ss_pred hhhhC----------CCCeEEEEECchhhhcChHHHHHHHHHHHCc-CEEEEEECCceeeeecccccCCCCCHHHHHHHc
Confidence 99875 3789999999999999999999999999999 79999999999999988653 347899999999
Q ss_pred CceEEEE
Q 005021 294 GWHVIWV 300 (719)
Q Consensus 294 G~~~~~v 300 (719)
||+++.|
T Consensus 247 G~~~~~V 253 (400)
T 2bfd_A 247 GIMSIRV 253 (400)
T ss_dssp TCEEEEE
T ss_pred CCcEEEE
Confidence 9999998
No 27
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.74 E-value=4e-17 Score=177.60 Aligned_cols=167 Identities=17% Similarity=0.125 Sum_probs=124.7
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhH-Hhhhhh
Q 005021 99 AVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDD-LKNFRQ 177 (719)
Q Consensus 99 ~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~-l~~~r~ 177 (719)
+.+...+..-|+..++.|.--+.+++... +++ .| +|++. |.. +.+++..|. +.++ |..+..
T Consensus 63 ~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~---l~~-------~D-~v~~~-~R~---~~~~~~~G~---~~~~~~~el~G 124 (368)
T 1w85_A 63 SISLNRQGRLGFYAPTAGQEASQIASHFA---LEK-------ED-FILPG-YRD---VPQIIWHGL---PLYQAFLFSRG 124 (368)
T ss_dssp HHHHHHTTSCCSCCCCTTCHHHHHHHHHT---CCT-------TC-EEECC-SSC---HHHHHHTTC---CHHHHHHHHHT
T ss_pred HHHHhhCCccccCCCCCCHHHHHHHHHHh---cCC-------cC-EEEec-chh---HHHHHhcCC---CHHHHHHHHCC
Confidence 33444333447777788877666777655 443 34 45554 777 666667774 4433 233321
Q ss_pred c--CCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHh
Q 005021 178 W--GSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLA 255 (719)
Q Consensus 178 ~--~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A 255 (719)
. |+. .|+ ..++...+|++|+|++.|+|+|+|.++.+ .+.+|||++|||++++|.+||+||+|
T Consensus 125 ~~~G~~--~h~----~~~~~~~~g~lG~~lp~AvG~A~A~~~~~----------~~~~vv~i~GDGa~~~G~~~Eal~~A 188 (368)
T 1w85_A 125 HFHGNQ--IPE----GVNVLPPQIIIGAQYIQAAGVALGLKMRG----------KKAVAITYTGDGGTSQGDFYEGINFA 188 (368)
T ss_dssp CGGGGC--CCT----TCCBCCCCCSTTHHHHHHHHHHHHHHHTT----------CSCCEEEEEETGGGGSHHHHHHHHHH
T ss_pred CCCCCC--CCc----ccccCCCccccCccccHHHHHHHHhHhhC----------CCCeEEEEEchhhhhhcHHHHHHHHH
Confidence 1 222 232 34677899999999999999999999875 37899999999999999999999999
Q ss_pred hhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEE
Q 005021 256 GHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 256 ~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
+.|+| |+|+||+||+|+|++++... ...++.+++++|||+++.|
T Consensus 189 ~~~~l-pvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V 233 (368)
T 1w85_A 189 GAFKA-PAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQV 233 (368)
T ss_dssp HHTTC-CEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEE
T ss_pred HHHCc-CEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEE
Confidence 99999 59999999999999987643 3467899999999999998
No 28
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.71 E-value=4.6e-18 Score=187.11 Aligned_cols=288 Identities=13% Similarity=0.049 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEe
Q 005021 410 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT 489 (719)
Q Consensus 410 s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~ 489 (719)
+..+|+..++.+ ...+++..-+-...+.. ...+..+.+ ++..+|+.+. +|+.++++|.|.|+.| .+|++++
T Consensus 24 ~GneAva~~~~~---ag~~~v~~yPgtP~t~i--~~~l~~~~~-~~g~~~i~~e-~E~~a~~~a~Gaa~aG--~r~~~~t 94 (395)
T 1yd7_A 24 QGDEAIARAAIL---AGCRFYAGYPITPASEI--FEAMALYMP-LVDGVVIQME-DEIASIAAAIGASWAG--AKAMTAT 94 (395)
T ss_dssp EHHHHHHHHHHH---HTCCEEEECCBTTTBCH--HHHHHHHGG-GGTCEEEECS-CHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EHHHHHHHHHHH---cCCCEEEEEECcchHHH--HHHHHHhhh-hcCcEEEEeC-CHHHHHHHHHHHHHhC--CcEEEEe
Confidence 444555555443 45677776665433221 112222222 3557889987 9999999999999999 5999999
Q ss_pred hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCC--CCCCCCChhhhhHHcCCC--CeEEEeeCCHHHHHHHHHHHHH-
Q 005021 490 FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE--DGPTHQPIEHLASFRAMP--NILMLRPADGNETAGAYKVAVA- 564 (719)
Q Consensus 490 y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~--dG~THq~~edia~lr~iP--nl~V~~P~d~~e~~~~l~~a~~- 564 (719)
.+.++.+++|||.+.+..++|++++... +.+.+. ...+||+..-.+++...| ++.+++|++++|+..++..|++
T Consensus 95 s~~G~~~~~d~l~~aa~~~~P~Vi~~~~-~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~l 173 (395)
T 1yd7_A 95 SGPGFSLMQENIGYAVMTETPVVIVDVQ-RSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNL 173 (395)
T ss_dssp ETTHHHHHTTTCC----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCCCEEEEEee-CCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHH
Confidence 9999999999998888889999988743 333221 223344322223556666 9999999999999999999983
Q ss_pred --cCCCcEEEEEcC------CC--CCC---CC----------CC--Ccccc--cc--------ccE--------------
Q 005021 565 --NRKRPSILALSR------QK--LPH---LA----------GT--SIDGV--EK--------GAY-------------- 595 (719)
Q Consensus 565 --~~~~P~~irl~r------~~--~~~---~~----------~~--~~~~~--~~--------G~~-------------- 595 (719)
+.+.||+++++. +. ++. +. .+ ..+.+ +. |.+
T Consensus 174 A~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g 253 (395)
T 1yd7_A 174 SEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKG 253 (395)
T ss_dssp HHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC-------------------------------------------
T ss_pred HHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEeccccccccc
Confidence 246999999863 11 110 00 00 00001 00 110
Q ss_pred ----------------------------EEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHH
Q 005021 596 ----------------------------IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDE 647 (719)
Q Consensus 596 ----------------------------~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~ 647 (719)
.....-...|.|++||++|+++..|++|++.|+++|++++||++++++|||.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~ 333 (395)
T 1yd7_A 254 RPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDF 333 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCH
Confidence 0000000126899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCceEEEEccccccCchhhhcCCceE-EeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 648 QSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKA-IGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 648 ~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~-ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+.+. +.+ ++. +.++|+|++. .|+++.+...... ..+...+..+ -.-++++.|.+++++++
T Consensus 334 ~~i~--~~~-~~~-~~vvvvEe~~-G~l~~~v~~~~~~~~~~~~~gk~~-------g~~~~~~ei~~~i~~~~ 394 (395)
T 1yd7_A 334 ELIE--RIA-ERV-DKLYVPEMNL-GQLYHLIKEGANGKAEVKLISKIG-------GEVHTPMEIFEFIRREF 394 (395)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHH--HHH-hcC-CEEEEEeCCc-hHHHHHHHHHhcCCCCeEEEeccC-------CCcCCHHHHHHHHHHhh
Confidence 8764 333 332 3469999997 5666655311000 0001111111 11267888888877653
No 29
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.69 E-value=1.2e-15 Score=165.58 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=117.9
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHH-hhhhhc-CCCCC--
Q 005021 108 SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDL-KNFRQW-GSKTP-- 183 (719)
Q Consensus 108 ~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l-~~~r~~-~~~~~-- 183 (719)
.|+..++.|.--+.+++-.. +++ .| .|+. +|.. +.+.+..|. +.+++ ..|... .+.+.
T Consensus 63 ~gf~~~~~GqEa~~vg~~~a---l~~-------~D-~i~~-~yR~---~~~~~~~G~---~~~~i~~e~~g~~~g~~~g~ 124 (365)
T 2ozl_A 63 RGFCHLCDGQEACCVGLEAG---INP-------TD-HLIT-AYRA---HGFTFTRGL---SVREILAELTGRKGGCAKGK 124 (365)
T ss_dssp CSCCCCCTTCHHHHHHHHHT---SCT-------TS-EEEC-CSCC---HHHHHHTTC---CHHHHHHHHTTCTTSTTTTS
T ss_pred cccccCCCChHHHHHHHHHh---hCC-------CC-EEeh-HHHH---HHHHHhcCC---CHHHHHHHHcCCCCCCCCCC
Confidence 36777778876666666655 443 35 4554 5998 888899995 55553 333211 11111
Q ss_pred -CCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCc
Q 005021 184 -GHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGK 262 (719)
Q Consensus 184 -g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~n 262 (719)
|..+. ..+++...+|++|++++.|+|+|+|.++++ .+.++||++|||++++|.+||+||+|+.|+|+
T Consensus 125 gg~~H~-~~~~~~~~~g~~G~~lp~A~G~A~A~~~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lp- 192 (365)
T 2ozl_A 125 GGSMHM-YAKNFYGGNGIVGAQVPLGAGIALACKYNG----------KDEVCLTLYGDGAANQGQIFEAYNMAALWKLP- 192 (365)
T ss_dssp SCTTCC-CBTTBCCCCCSTTTHHHHHHHHHHHHHHHT----------CCCCEEEEEETTGGGCHHHHHHHHHHHHTTCC-
T ss_pred CCCCCc-CccccCCCcchhhhhhHHHHHHHHHHHhcC----------CCceEEEEECchhhhccHHHHHHHHHHHHCcC-
Confidence 11111 134566677999999999999999999876 37889999999999999999999999999995
Q ss_pred EEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEE
Q 005021 263 LIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 263 li~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
+|+||+||+|+|+++.... ...++.+ +++||+.+.|
T Consensus 193 vi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~V 229 (365)
T 2ozl_A 193 CIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRV 229 (365)
T ss_dssp EEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEE
T ss_pred EEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEE
Confidence 9999999999999876543 2344554 6899999988
No 30
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.67 E-value=6.9e-15 Score=161.69 Aligned_cols=97 Identities=24% Similarity=0.209 Sum_probs=88.4
Q ss_pred CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 193 gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
++...+|++|++++.|+|+|+|.++++ .+.++||++|||++++|.+||+||+|+.|+|+ +|+||+||+|
T Consensus 175 ~~~~~~g~lG~~lp~AvGaA~A~k~~~----------~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lp-vi~Vv~NN~~ 243 (407)
T 1qs0_A 175 GFFTISGNLATQFVQAVGWAMASAIKG----------DTKIASAWIGDGATAESDFHTALTFAHVYRAP-VILNVVNNQW 243 (407)
T ss_dssp TBCCCCSSSSHHHHHHHHHHHHHHHTT----------CCCCEEEEEETGGGGSHHHHHHHHHHHHHTCC-EEEEEEECSE
T ss_pred CccccccccccchhHHHHHHHHHHHhC----------CCCEEEEEECCchhhcChHHHHHHHHHHHCcC-EEEEEECCCc
Confidence 566789999999999999999999875 37899999999999999999999999999997 9999999999
Q ss_pred Ccccchhhh--cchhHHHHHhccCceEEEE
Q 005021 273 SIDGDTEIA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 273 sis~~~~~~--~~~~~~~~~~a~G~~~~~v 300 (719)
+|++++... ...++.+++++|||+++.|
T Consensus 244 gi~~~~~~~~~~~~d~a~~a~a~G~~~~~V 273 (407)
T 1qs0_A 244 AISTFQAIAGGESTTFAGRGVGCGIASLRV 273 (407)
T ss_dssp ETTEEGGGGTTTTCCSTHHHHHTTCEEEEE
T ss_pred ceeeccccccCCCCCHHHHHHHcCCeEEEE
Confidence 999987643 3568999999999999998
No 31
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.27 E-value=1.2e-10 Score=143.70 Aligned_cols=208 Identities=12% Similarity=0.069 Sum_probs=149.3
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
.+.+....+|..+++++.|.|..| .++++++-+.=+..+.+.|+..+...+|++++.. ++.+.+..-.+|-...|.
T Consensus 54 ~~~v~~~esE~aA~~aaiGAa~aG--aR~~t~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va-~R~g~~~glsi~~~hsd~- 129 (1231)
T 2c42_A 54 TLTIREMQSEAGAAGAVHGALAAG--ALTTTFTASQGLLLMIPNMYKISGELLPGVFHVT-ARAIAAHALSIFGDHQDI- 129 (1231)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTT--CCEEEEECHHHHHHHHHHHHHHHHTTCCCEEEEE-ECCCCSSSBCCSCCSHHH-
T ss_pred ceEEEecCChHHHHHHHHHHHHcC--ChHhhhccHHHHHHHHHHHHHHhCCCCCEEEEEC-CCCccCCCCcCCCchhhH-
Confidence 588999999999999999999999 5999998777777888998877778999888874 333322111233333453
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHH----HHcCCCcEEEEEcCCCC-----C-CCCC---------------------C
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVA----VANRKRPSILALSRQKL-----P-HLAG---------------------T 585 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a----~~~~~~P~~irl~r~~~-----~-~~~~---------------------~ 585 (719)
+....+|+.|++|++++|+..++..| .+ ...||++++..-.+ + .+++ .
T Consensus 130 ~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek-~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~ 208 (1231)
T 2c42_A 130 YAARQTGFAMLASSSVQEAHDMALVAHLAAIE-SNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMN 208 (1231)
T ss_dssp HTTTTSSCEEEECCSHHHHHHHHHHHHHHHHH-HCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCC
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHHHHHH-cCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccC
Confidence 45677999999999999999999887 43 57899999754110 0 0000 0
Q ss_pred Ccccccccc------------------------------------------EEEecCCCCCCCCEEEEEeCHhHHHHHHH
Q 005021 586 SIDGVEKGA------------------------------------------YIISDNSSGNKPDVILIGTGSELEIAAKA 623 (719)
Q Consensus 586 ~~~~~~~G~------------------------------------------~~i~~~~~~~g~dvtIva~G~~v~~al~A 623 (719)
+..++..|. +..... .+.|++||++|+++..+++|
T Consensus 209 p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~---~dAd~vIVa~Gs~~~~~~eA 285 (1231)
T 2c42_A 209 PEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGA---PDAERVIVSMGSSCETIEEV 285 (1231)
T ss_dssp TTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEEC---TTCSEEEEECSTHHHHHHHH
T ss_pred CCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecC---CCCCEEEEEeCHHHHHHHHH
Confidence 001112221 222222 26899999999999999999
Q ss_pred HHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCc
Q 005021 624 AEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 675 (719)
Q Consensus 624 a~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~ 675 (719)
++.|+++|++|.||+++++.||+.+.+. ..++.+.+.++|+|+....|.
T Consensus 286 v~~L~~~G~kvgvl~lr~~rPfp~~~i~---~~l~~~~k~i~VvE~~~~~g~ 334 (1231)
T 2c42_A 286 INHLAAKGEKIGLIKVRLYRPFVSEAFF---AALPASAKVITVLDRTKEPGA 334 (1231)
T ss_dssp HHHHHTTTCCEEEEEESEEESCCHHHHH---HTSCTTCCEEEEEESSCCTTC
T ss_pred HHHHHhcCCceEEEEEEEeCCCCHHHHH---HHHHhcCCEEEEEECCCCCCC
Confidence 9999999999999999999999988663 334333334688999855553
No 32
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=98.94 E-value=9.6e-10 Score=100.22 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=72.7
Q ss_pred CCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCce
Q 005021 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGK 684 (719)
Q Consensus 605 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~ 684 (719)
|.|++||+||+++..|++|++.|+++|+++.||++++++|||.+.+. ..++.... ++|+|++...|+++.+..
T Consensus 13 g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~---~~~~~~~~-vvvvE~~~~G~l~~~i~~--- 85 (118)
T 3ju3_A 13 EADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVK---NVLSSANL-VIDVESNYTAQAAQMIKL--- 85 (118)
T ss_dssp SCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHH---HHHTTCSC-CCCCCCCCCCCHHHHHHH---
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHH---HHHcCCCE-EEEEECCCCCcHHHHHHH---
Confidence 68999999999999999999999999999999999999999998764 23333333 699999876777766531
Q ss_pred EEee---CcCCC-CCCHHHHHHHhCCCHHHHHHHHHHh
Q 005021 685 AIGI---DRFGA-SAPAGKIYKEFGITAEAVITAAKEV 718 (719)
Q Consensus 685 ~ig~---d~f~~-~g~~~el~~~~gl~~e~I~~~i~~~ 718 (719)
..+. ..... .|. -++++.|.++++++
T Consensus 86 ~~~~~~~~~i~~~~G~--------~~~~~ei~~~i~~~ 115 (118)
T 3ju3_A 86 YTGIDIKNKILKYNGR--------HMTEDEILKSAKEI 115 (118)
T ss_dssp HHCCCCCCCCCCBTTB--------CCCHHHHHHHHHHH
T ss_pred HcCCCceeEEeeeCCe--------eCCHHHHHHHHHHH
Confidence 1111 11111 122 27788888887765
No 33
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=98.64 E-value=2e-08 Score=116.40 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=70.4
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc-
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID- 275 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis- 275 (719)
..|++|.|++.|+|++++.+ +++|||++|||+++.+ +++|+.|..++|+.++||+|||+|++-
T Consensus 418 ~~g~~G~~l~~A~Gaala~~--------------~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~ 481 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNYP--------------ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIK 481 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred ccccccchhHHHhhHHHhCC--------------CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHH
Confidence 45789999999999998742 5679999999999876 888999999999877788888889862
Q ss_pred --------c-chhh-hcchhHHHHHhccCceEEEE
Q 005021 276 --------G-DTEI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 --------~-~~~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
. ..+. ....++.+++++|||+.+.|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 516 (603)
T 4feg_A 482 DEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRV 516 (603)
T ss_dssp HHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEE
Confidence 1 1111 12357999999999998877
No 34
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=98.59 E-value=3.4e-08 Score=113.41 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=75.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.| + .+++|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++.+
T Consensus 417 g~g~~G~~l~~AiGaa~a~~--~----------~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~ 482 (563)
T 2uz1_A 417 YLGSMGVGFGTALGAQVADL--E----------AGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATL 482 (563)
T ss_dssp TTCCTTTHHHHHHHHHHHHH--H----------HTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHH
T ss_pred CCccccChHHHHHHHHHHhh--C----------CCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHH
Confidence 46899999999999999986 2 26789999999999886 6899999999998889999999999876
Q ss_pred chh-------h-----hcchhHHHHHhccCceEEEE
Q 005021 277 DTE-------I-----AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~-------~-----~~~~~~~~~~~a~G~~~~~v 300 (719)
... . ....++.+.+++|||+++.|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 518 (563)
T 2uz1_A 483 HFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHV 518 (563)
T ss_dssp HHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEe
Confidence 531 1 02357899999999998875
No 35
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=98.58 E-value=3.5e-08 Score=113.34 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=75.5
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
...|.+|.|++.|+|+|+|.+.++ .+.+|||++|||+++. .+++|+.|..++|+.+++|+|||++++.
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~----------~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~ 477 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEID----------PKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIQ 477 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHC----------TTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred cchhhhhhHHHHHHHHHHhCcccC----------CCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcchhh
Confidence 357899999999999999988654 2578999999999976 4888999999999988899999999985
Q ss_pred cchh----h---hcchhHHHHHhccCce---EEEE
Q 005021 276 GDTE----I---AFTENVDKRFEGLGWH---VIWV 300 (719)
Q Consensus 276 ~~~~----~---~~~~~~~~~~~a~G~~---~~~v 300 (719)
.... . ....++.+++++|||+ .++|
T Consensus 478 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v 512 (563)
T 2vk8_A 478 KLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRV 512 (563)
T ss_dssp HHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEE
T ss_pred hhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEe
Confidence 4321 1 1234788899999998 6665
No 36
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=98.57 E-value=2.1e-08 Score=115.39 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=73.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++.+
T Consensus 434 g~g~mG~~l~~AiGaa~a~~--------------~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~ 497 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMARP--------------DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIE 497 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHST--------------TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHH
T ss_pred CCcccccHHHHHHHHHHhCC--------------CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhH
Confidence 46899999999999999842 5679999999999875 7899999999998889999999999877
Q ss_pred chh-----------h-hcchhHHHHHhccCceEEEE
Q 005021 277 DTE-----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~-----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
... . ....++.+.+++|||+++.|
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 533 (573)
T 2iht_A 498 LYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRA 533 (573)
T ss_dssp HHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEEC
T ss_pred HHHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEe
Confidence 531 1 11247899999999988765
No 37
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=98.54 E-value=5e-08 Score=112.67 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=73.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++..
T Consensus 411 ~~g~mG~~l~~AiGaala~~--------------~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 474 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTYP--------------DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIK 474 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGG
T ss_pred CCCcccChHHHHHHHHHhCC--------------CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHH
Confidence 57899999999999999842 5679999999999876 6999999999999899999999999876
Q ss_pred chhh----------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....++.+.+++|||+.++|
T Consensus 475 ~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 508 (590)
T 1v5e_A 475 NKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTV 508 (590)
T ss_dssp GTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEE
T ss_pred HHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEE
Confidence 4311 12357899999999998876
No 38
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=98.52 E-value=3.9e-08 Score=113.02 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=72.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|..++|+.+++|+|||++++.+
T Consensus 418 g~g~mG~~l~~AiGaala~~--------------~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~ 481 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVNP--------------ERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVA 481 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHST--------------TSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhCC--------------CCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHH
Confidence 46899999999999999842 5789999999999874 6889999999998888889999999876
Q ss_pred chh----------hhcchhHHHHHhccCceEEEE
Q 005021 277 DTE----------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~----------~~~~~~~~~~~~a~G~~~~~v 300 (719)
... .....++.+.+++|||+.++|
T Consensus 482 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 515 (566)
T 1ozh_A 482 IQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAV 515 (566)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEEC
T ss_pred HHHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEe
Confidence 432 111357899999999998765
No 39
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=98.51 E-value=4e-08 Score=111.98 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=72.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|++|.+++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++....
T Consensus 401 g~~G~~l~~A~G~a~a~~--------------~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~ 464 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP--------------ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWF 464 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT--------------TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHH
T ss_pred ccccchHHHHHHHHHhCC--------------CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHH
Confidence 999999999999999842 4679999999999977 899999999999888888899999986553
Q ss_pred hh-----------hcchhHHHHHhccCceEEEE
Q 005021 279 EI-----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ~~-----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.. ....++.+.+++|||+.+.|
T Consensus 465 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 497 (528)
T 1q6z_A 465 AGVLEAENVPGLDVPGIDFRALAKGYGVQALKA 497 (528)
T ss_dssp HHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEE
T ss_pred HHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe
Confidence 11 12347899999999998875
No 40
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=98.49 E-value=7.7e-08 Score=111.69 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=71.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.+++.|+|+|+|.+ +.+|||++|||+++.+ +++|+.|..++|+.+++|+|||+|++..
T Consensus 440 ~~G~~G~~l~~AiGaala~~--------------~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 503 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAADP--------------KRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIR 503 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHCT--------------TCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhCC--------------CCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 46899999999999999842 5789999999999865 7899999999998889999999998753
Q ss_pred ch---------------hh--hc----chhHHHHHhccCceEEEE
Q 005021 277 DT---------------EI--AF----TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~---------------~~--~~----~~~~~~~~~a~G~~~~~v 300 (719)
.. +. .. ..++.+.+++|||+++.|
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 548 (616)
T 2pan_A 504 QSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV 548 (616)
T ss_dssp HHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEE
Confidence 21 10 11 147889999999998876
No 41
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=98.48 E-value=5.7e-08 Score=111.61 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=72.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.|++.|+|+|+|.+ +.+|||++|||+++ +.+++|..|.+++|+.+++|+|||+|++...
T Consensus 421 ~g~mG~~l~~A~G~ala~~--------------~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~ 484 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVSG--------------GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRT 484 (565)
T ss_dssp TCCTTCHHHHHHHHHHHTT--------------TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHH
T ss_pred cccccccchHHHHHHHhCC--------------CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEee
Confidence 5899999999999999852 56799999999998 8899999999999988999999999988543
Q ss_pred hh------hhcchhHHHHHhccCceEEEE
Q 005021 278 TE------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~------~~~~~~~~~~~~a~G~~~~~v 300 (719)
.. .....++.+.+++|||+.++|
T Consensus 485 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 513 (565)
T 2nxw_A 485 FQPESAFNDLDDWRFADMAAGMGGDGVRV 513 (565)
T ss_dssp HCTTCGGGBCCCCCHHHHTGGGTSEEEEE
T ss_pred ecccCCCCcCCCCCHHHHHHHcCCCEEEe
Confidence 21 112357899999999998876
No 42
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=98.48 E-value=4.6e-08 Score=113.01 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=73.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++.+
T Consensus 422 g~g~mG~~l~~AiGaala~~--------------~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~ 485 (589)
T 2pgn_A 422 AEGILGCGFPMALGAQLAEP--------------NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANW 485 (589)
T ss_dssp TTCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred CcchhhhHHHHHHHHHHhCC--------------CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccch
Confidence 35899999999999999842 5679999999999876 6999999999998889999999999876
Q ss_pred chhh----------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....++.+.+++|||+.+.|
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 519 (589)
T 2pgn_A 486 TLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESV 519 (589)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEEC
T ss_pred HHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEE
Confidence 5421 11357899999999988765
No 43
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=98.47 E-value=6.7e-08 Score=111.62 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=71.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|.+++|+.+++|+|||+|++.+
T Consensus 424 ~~G~~G~~l~~AiGaala~~--------------~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 487 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVANP--------------DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVM 487 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhCC--------------CCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHH
Confidence 45899999999999999852 5679999999999865 7899999999998788889999998865
Q ss_pred chh----------h-h-c-------chhHHHHHhccCceEEEE
Q 005021 277 DTE----------I-A-F-------TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~----------~-~-~-------~~~~~~~~~a~G~~~~~v 300 (719)
... . . . ..++.+.+++||++++.|
T Consensus 488 ~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v 530 (590)
T 1ybh_A 488 QWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARV 530 (590)
T ss_dssp HHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEE
T ss_pred HHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEe
Confidence 321 0 0 1 247889999999998875
No 44
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=98.44 E-value=7.3e-08 Score=110.84 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=72.4
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
...|.+|.|++.|+|+|+|.+ +.+|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++.
T Consensus 422 ~~~g~mG~~l~~A~Gaala~~--------------~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~ 485 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIADK--------------ESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVE 485 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHCT--------------TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred ccchhhhhhHHHHHHHHHhCC--------------CCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHH
Confidence 357899999999999999842 5789999999999774 788999999999989999999999886
Q ss_pred cchh----h---hcchhHHHHHhccCce-----EEEE
Q 005021 276 GDTE----I---AFTENVDKRFEGLGWH-----VIWV 300 (719)
Q Consensus 276 ~~~~----~---~~~~~~~~~~~a~G~~-----~~~v 300 (719)
.... . ....++.+.+++|||+ +++|
T Consensus 486 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v 522 (570)
T 2vbf_A 486 REIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIV 522 (570)
T ss_dssp HHHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEE
T ss_pred HHHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEe
Confidence 5321 1 1235788899999997 5655
No 45
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=98.43 E-value=5.1e-08 Score=112.02 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=72.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.+++.|+|+|+|.+ +.+|||++|||+++.+ +++|+.|..++++.+++|+|||+|++..
T Consensus 407 ~~g~mG~~l~~A~G~ala~~--------------~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~ 470 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGSQ--------------DRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEI 470 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTCT--------------TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHH
T ss_pred cccchhhHHHHHHHHHHhCC--------------CCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEE
Confidence 46889999999999999742 5789999999999864 7789999999999899999999999876
Q ss_pred chh-----hhcchhHHHHHhccCc-----eEEEE
Q 005021 277 DTE-----IAFTENVDKRFEGLGW-----HVIWV 300 (719)
Q Consensus 277 ~~~-----~~~~~~~~~~~~a~G~-----~~~~v 300 (719)
... .....++.+.+++||| +++.|
T Consensus 471 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v 504 (566)
T 2vbi_A 471 AIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKA 504 (566)
T ss_dssp TTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEE
T ss_pred eeccCCccCCCCCCHHHHHHHcCCCCCCccEEEe
Confidence 532 1123477888999999 77765
No 46
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=98.43 E-value=7.1e-08 Score=110.48 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=71.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.+ +++|||++|||+++. .+++|..|..++|+.+++|+|||++++..
T Consensus 406 ~~g~mG~~l~~A~G~a~a~~--------------~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~ 469 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTACP--------------NRRVIVLTGDGAAQL--TIQELGSMLRDKQHPIILVLNNEGYTVER 469 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHH--HTTHHHHHHHTTCCCEEEEEESSSCHHHH
T ss_pred hhHhhhhHHHHHHHHHHhCC--------------CCcEEEEECchHHHh--HHHHHHHHHHhCCCCEEEEEECCCCeEEE
Confidence 57999999999999999842 567999999999974 58889999999998899999999999864
Q ss_pred ch----hh---hcchhHHHHHhccCc----eEEEE
Q 005021 277 DT----EI---AFTENVDKRFEGLGW----HVIWV 300 (719)
Q Consensus 277 ~~----~~---~~~~~~~~~~~a~G~----~~~~v 300 (719)
.. .. ....++.+.+++||| +.++|
T Consensus 470 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v 504 (552)
T 1ovm_A 470 AIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRV 504 (552)
T ss_dssp HHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEE
T ss_pred eeccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEe
Confidence 32 11 123467888999999 66665
No 47
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=98.39 E-value=1.6e-07 Score=110.12 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=72.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|+|+|. .+.+|||++|||+++. .+++|+.|..++|+.++||+|||++++..
T Consensus 511 ~~G~mG~~lpaAiGaalA~--------------p~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~g~~~ 574 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK--------------PESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGMVT 574 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC--------------TTSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHHHH
T ss_pred CcchhhchHHHHHHHHHhC--------------CCCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCchhhh
Confidence 4588999999999999984 1678999999999976 46789999999998889999999998754
Q ss_pred chhh-----------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI-----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~-----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....++.+.+++|||+.+.|
T Consensus 575 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 609 (677)
T 1t9b_A 575 QWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRV 609 (677)
T ss_dssp HHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEE
T ss_pred hhhhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEE
Confidence 3210 12347899999999998876
No 48
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=98.37 E-value=1.5e-07 Score=108.25 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=68.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.+++.|+|+|+|.+ +.+|||++|||+++. .+++|+.|..++++.+++|+|||++++..
T Consensus 411 ~~g~~G~~l~~A~G~ala~~--------------~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 474 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGAP--------------ERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEV 474 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHCT--------------TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHH
T ss_pred CcchhhhHHHHHHHHHHhCC--------------CCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcceEee
Confidence 46789999999999999842 578999999999976 57889999999998889999999999875
Q ss_pred chh-----hhcchhHHHHHhccCc
Q 005021 277 DTE-----IAFTENVDKRFEGLGW 295 (719)
Q Consensus 277 ~~~-----~~~~~~~~~~~~a~G~ 295 (719)
... .....++.+.+++||+
T Consensus 475 ~~~~~~~~~~~~~d~~~~a~a~G~ 498 (568)
T 2wvg_A 475 MIHDGPYNNIKNWDYAGLMEVFNG 498 (568)
T ss_dssp TTSCCGGGCCCCCCHHHHHHHHHC
T ss_pred eeccCCCcCCCCCCHHHHHHHhCC
Confidence 432 1123478899999999
No 49
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=98.27 E-value=4.6e-07 Score=103.68 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=69.4
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.+++.|+|+|+|.. +.+|||++|||+++.+ +++|+.|.+++++.+++|+|||+|++-.
T Consensus 404 ~~g~mG~~l~~AiGaala~~--------------~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~ 467 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATEP--------------ERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVA 467 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHST--------------TSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-
T ss_pred CCchhhhHHHHHHHHHHhCC--------------CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 35889999999999999842 5679999999999654 7899999999998889999999887632
Q ss_pred chh----------hhcchhHHHHHhccCceEEEE
Q 005021 277 DTE----------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~----------~~~~~~~~~~~~a~G~~~~~v 300 (719)
... .....++.+.+++||++.++|
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 501 (549)
T 3eya_A 468 MEMKAGGYLTDGTELHDTNFARIAEACGITGIRV 501 (549)
T ss_dssp -----------CCBCCCCCHHHHHHHTTSEEEEE
T ss_pred HHHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEe
Confidence 110 012347889999999988765
No 50
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=98.18 E-value=9.9e-07 Score=102.13 Aligned_cols=86 Identities=10% Similarity=0.010 Sum_probs=68.0
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.+++.|+|+|+|. +.+|||++|||+++.+ +++|+.|..++|+.+++|+|||+++|...
T Consensus 454 ~~~ig~~l~~AiGaala~---------------~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~ 516 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT---------------KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSF 516 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH---------------TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGG
T ss_pred cCCcCcHHHHHHHHHhcC---------------CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCccccc
Confidence 356789999999999983 3569999999999876 56799999999988888889999998543
Q ss_pred hh---------hh----cchhHHHHHhccCceEEEE
Q 005021 278 TE---------IA----FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~---------~~----~~~~~~~~~~a~G~~~~~v 300 (719)
.. .. ...++.+.+++||++.++|
T Consensus 517 ~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 552 (604)
T 2x7j_A 517 LPQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCP 552 (604)
T ss_dssp SGGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECC
T ss_pred CCCCccchhhHhhccCCCCCCHHHHHHHcCCeEEec
Confidence 21 11 1247888999999987754
No 51
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=98.12 E-value=2.1e-06 Score=98.60 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=67.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC-Ccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI-SID 275 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~-sis 275 (719)
..|.+|.|++.|+|+|+| . +.+|+|++|||+++ +.++.|..|..++|+.+++|+|||++ ++.
T Consensus 424 ~~g~~G~~l~~AiGaala-~--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 486 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-T--------------GKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGN 486 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-H--------------CSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSC
T ss_pred CCccccccHHHHHHHHhC-C--------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 468899999999999998 2 46799999999996 45788999999999877777777774 543
Q ss_pred cch------hh--hcchhHHHHHhccCceEEEE
Q 005021 276 GDT------EI--AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ~~~------~~--~~~~~~~~~~~a~G~~~~~v 300 (719)
... .. ....++.+.+++||++.++|
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 519 (568)
T 2c31_A 487 EADPQPGVISCTRLTRGRYDMMMEAFGGKGYVA 519 (568)
T ss_dssp CCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEE
T ss_pred HHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEe
Confidence 211 00 22357899999999988776
No 52
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=98.11 E-value=1.7e-06 Score=99.37 Aligned_cols=87 Identities=21% Similarity=0.182 Sum_probs=67.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC-Ccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI-SID 275 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~-sis 275 (719)
..|++|.|++.|+|+|+| . +.+|||++|||+++. .++.|..|.+++|+.+++|+|||++ ++.
T Consensus 419 ~~g~~G~~l~~AiGaa~a-~--------------~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 481 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-S--------------GSPVVAIEGDSAFGF--SGMEIETICRYNLPVTIVIFNNGGIYRGD 481 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-H--------------CSCEEEEEEHHHHHT--TGGGHHHHHHTTCCEEEEEEECSBSSCSC
T ss_pred CCCcccchHHHHHHHhhc-C--------------CCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 468899999999999997 2 467999999999965 4678999999999878888888874 553
Q ss_pred cch-------hh---hcchhHHHHHhccCceEEEE
Q 005021 276 GDT-------EI---AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ~~~-------~~---~~~~~~~~~~~a~G~~~~~v 300 (719)
... .. ....++.+.+++||++.++|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 516 (564)
T 2q28_A 482 GVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNV 516 (564)
T ss_dssp CCCTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEE
T ss_pred HHHHhccCCccccccCCCCCHHHHHHHcCCeEEEe
Confidence 211 11 11346888899999988765
No 53
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=97.71 E-value=2.1e-05 Score=89.97 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|..|. ++.|+|+|+| . +.+|+|++|||+++ +....|+.|..++++-+++|+||++++|.+.
T Consensus 416 ~g~~G~-l~~A~Gaa~a-~--------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~ 477 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-S--------------GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIFSL 477 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-H--------------CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC------
T ss_pred cccccH-HHHHHHHHhc-C--------------CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCcccC
Confidence 344455 9999999998 2 45799999999995 4567799999999976677777777776543
Q ss_pred hh-------h----hcchhHHHHHhccCceEEEE
Q 005021 278 TE-------I----AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~-------~----~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....++.+..++||++.+.|
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 511 (556)
T 3hww_A 478 LPTPQSERERFYLMPQNVHFEHAAAMFELKYHRP 511 (556)
T ss_dssp -----------CCCCCCCCSHHHHHHTTCEEECC
T ss_pred CCCcchhHHHhccCCCCCCHHHHHHHcCCcEEec
Confidence 21 1 11346788889999886654
No 54
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=97.47 E-value=4.1e-05 Score=88.02 Aligned_cols=79 Identities=10% Similarity=-0.026 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch-----
Q 005021 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT----- 278 (719)
Q Consensus 204 gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~----- 278 (719)
+++.|+|+|++ +.+|+|++|||+++ +.+++|+.|..++|+-+++|+|||++.+-...
T Consensus 441 ~l~~AiGaa~~----------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~ 502 (578)
T 3lq1_A 441 VVSSALGASVV----------------FQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANE 502 (578)
T ss_dssp HHHHHHHHTTT----------------SSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC-------------
T ss_pred HHHHHHHHhcC----------------CCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCccccccccccc
Confidence 68999998631 46799999999996 55778999999999766677777788775421
Q ss_pred ----hhh----cchhHHHHHhccCceEEEE
Q 005021 279 ----EIA----FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ----~~~----~~~~~~~~~~a~G~~~~~v 300 (719)
+.. ...++.+..++||++.++|
T Consensus 503 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 532 (578)
T 3lq1_A 503 PKYFESLFGTSTELDFRFAAAFYDADYHEA 532 (578)
T ss_dssp ------------CCCTHHHHHHTTCEEEEC
T ss_pred cchhhhhccCCCCCCHHHHHHHcCCceEec
Confidence 000 1236788889999987765
No 55
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=93.21 E-value=0.34 Score=55.50 Aligned_cols=114 Identities=8% Similarity=-0.088 Sum_probs=81.2
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCcc-CCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~-g~dG~THq~~ed 534 (719)
|++- ...|++++-+|.|+|+... +|.+ .+..+-+.-++..|.++-+.+.||+++........ |. | .+|.+..
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~tg--k~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~g~-~-~~Q~~d~ 119 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFGG--NLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNM-D-AFQELNQ 119 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTTC--CCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTT-T-CTTCCCC
T ss_pred eEEe-eCCHHHHHHHHHHHHHHHC--CCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccCCC-C-cccccCH
Confidence 4444 4899999999999999753 5544 45667777778888887778999998875443332 32 2 3677777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQK 578 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~~ 578 (719)
..+++.+-.. .+.+.+++++..+++.|+ ....+||+| +|..-
T Consensus 120 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 120 NPMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 8999998766 566677777666666554 334599999 98853
No 56
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=91.44 E-value=0.69 Score=52.63 Aligned_cols=117 Identities=20% Similarity=0.112 Sum_probs=80.9
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++- ..-|++++-+|-|+|+... +|.+ .+..+=..-++..|.++-+.+.||+++........-..+..||.+..
T Consensus 49 i~~i~-~~~E~~Aa~~A~Gyar~tg--~p~v~~~TsGpG~~N~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~ 125 (573)
T 2iht_A 49 IDFVL-TRHEFTAGVAADVLARITG--RPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDS 125 (573)
T ss_dssp CEEEE-CSSHHHHHHHHHHHHHHHC--SCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCH
T ss_pred CeEEe-eCCHHHHHHHHHHHHHHHC--CCEEEEEccCchHHHHHHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCH
Confidence 34444 4899999999999998642 6654 45666666777788888888999998874433332112135888888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..+++.+-.... ...+++++...++.|++ ...|||+|-+|..
T Consensus 126 ~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 126 VAIVAPMSKYAV-ELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHhHhhEEE-EcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 999998886554 44456666666665553 2359999999864
No 57
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.36 E-value=0.57 Score=53.56 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=80.1
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ .-|++++-+|-|+|+... +|.+ .|..+-..-++..|.++-+.+.||+++........-..|..||.+...
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg--~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKD--RSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHT--SCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHC--CCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChh
Confidence 56655 899999999999998632 5533 567777777788888888899999988744333321122168888888
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
. ++.+-.... ...+++++...++.|++ ...|||+|-+|..
T Consensus 122 ~-~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 122 S-FTPIARSTQ-RVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp G-GTTTSSEEE-ECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred h-ccccEEEEe-ecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 8 888876544 34456666665555543 2458999999874
No 58
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=91.34 E-value=0.82 Score=51.84 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=79.8
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCC-h
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQP-I 532 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~-~ 532 (719)
=|++.+ ..|++++-+|-|+|+. | +|.+ .+..+=+..++..|.++-+.+.||+++........-..| .||. +
T Consensus 42 i~~i~~-~~E~~Aa~~A~Gyar~tg---~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~~-~~Q~~~ 116 (563)
T 2uz1_A 42 VPIIDT-RHEAAAGHAAEGYARAGA---KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETN-TLQAGI 116 (563)
T ss_dssp CCEEEC-SSHHHHHHHHHHHHHHHT---SCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTSC-CTTCCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhC---CCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccCCch-hhhhhc
Confidence 456654 8999999999999986 6 5544 356555667777787777789999988744333322123 3787 8
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
....+++.+-... +...+++++..+++.|+ ....|||+|-+|..
T Consensus 117 d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 117 DQVAMAAPITKWA-HRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CHHHHHGGGCSEE-EECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred cHHHHhhhhhceE-EEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 8889999887654 44456666666555554 33469999999875
No 59
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=90.42 E-value=0.84 Score=51.84 Aligned_cols=113 Identities=11% Similarity=0.054 Sum_probs=75.8
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++.+ .-|++++-+|-|+|+. | +|.+ .+..+=+.-++..|.++-+.+.||+++....... .|. ..||.+.
T Consensus 50 ~~v~~-~~E~~Aa~~A~Gyar~tg---~p~v~~~TsGpG~~N~~~~l~~A~~~~vPll~itg~~~~~~~~~--~~~Q~~d 123 (566)
T 1ozh_A 50 RIIPV-RHEANAAFMAAAVGRITG---KAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAK--QVHQSMD 123 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS---SCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTC--------CCC
T ss_pred cEEEe-CCHHHHHHHHHHHHHHHC---CCEEEEEccChHHHHHHHHHHHHHhcCCCEEEEeCCCccccCCC--CcccccC
Confidence 55555 8999999999999985 6 5644 3566666677777877778899999887433332 232 3478888
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHH----HHHcCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKV----AVANRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~----a~~~~~~P~~irl~r~ 577 (719)
...+++.+..... ...+++++...++. |.....|||+|-+|..
T Consensus 124 ~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 124 TVAMFSPVTKYAI-EVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHHGGGCSEEE-ECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHHhheEE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 8899998876543 44556666555554 4433469999999874
No 60
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=90.34 E-value=1.1 Score=50.98 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=81.8
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
|++.+ .-|++++.+|-|+|+. | +|.+ .++.+=..-++..|.++-+.+.||+++........-..| .+|.+..
T Consensus 52 ~~i~~-~~E~~Aa~~A~Gyar~tg---~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g~~-~~Q~~d~ 126 (590)
T 1ybh_A 52 RNVLP-RHEQGGVFAAEGYARSSG---KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTD-AFQETPI 126 (590)
T ss_dssp EECCC-SSHHHHHHHHHHHHHHHS---SCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTTT-CTTCCCH
T ss_pred cEEee-CCHHHHHHHHHHHHHHHC---CCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccCCC-cccccCH
Confidence 55554 8999999999999986 6 5544 356555566677777777889999988743333322123 4777888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
..+++.+-... +...+++++..+++.|++. ..|||+|-+|..
T Consensus 127 ~~~~~~~~k~~-~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 127 VEVTRSITKHN-YLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHHGGGSSEE-EECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhCeE-EecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 89999888764 4556777888888777642 368999998863
No 61
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=89.58 E-value=1.1 Score=50.84 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=81.3
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++- ..-|++++-+|-|+|+. | +|-+ .|..+=...++..|.++-+.+.||+++....... .|. | .||.+.
T Consensus 48 ~~i~-~~hE~~Aa~~AdGyAr~tG---~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~~~~~~g~-~-~~Q~~d 121 (556)
T 3hww_A 48 IHHT-HFDERGLGHLALGLAKVSK---QPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDC-G-ANQAIR 121 (556)
T ss_dssp EEEE-CSCHHHHHHHHHHHHHHHC---SCEEEEECSSHHHHTTHHHHHHHHHHCCCEEEEEEECCGGGSSS-S-CTTCCC
T ss_pred eEEE-ecCCcHHHHHHHHHHHhhC---CCEEEEECCCcHHHhhhHHHHHHHHhCCCeEEEeCCCCHHHhcc-C-CCcccc
Confidence 5554 46899999999999985 6 5544 3566666677777777778899999887433333 232 3 488888
Q ss_pred hhhHHcCCCCeEEEee--CC---HHHHHHHHHHHHHc-CCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRP--AD---GNETAGAYKVAVAN-RKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P--~d---~~e~~~~l~~a~~~-~~~P~~irl~r~ 577 (719)
+..+++.+-......+ .+ ++++..+++.|+.. ..|||+|-+|..
T Consensus 122 ~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~d 171 (556)
T 3hww_A 122 QPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171 (556)
T ss_dssp CTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEECC
T ss_pred HHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCcC
Confidence 8889998876655443 32 35688899988852 458999999974
No 62
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=89.31 E-value=1.1 Score=50.24 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=75.0
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++. ...|++++.+|.|+|+. | +|.++ +..+=+.-++..|.++-+.+.||+++....... .+. |+.++.+.
T Consensus 40 ~~i~-~~~E~~Aa~~A~Gyar~tg---~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~-~~~q~~~d 114 (528)
T 1q6z_A 40 RYIL-ALQEACVVGIADGYAQASR---KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGV-EALLTNVD 114 (528)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHT---SCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHTT-TCTTCCTT
T ss_pred cEEE-ECcHHHHHHHHHHHHHHhC---CCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCcccccCC-Cccccccc
Confidence 5554 48999999999999997 6 55443 444555566777777777899999886433332 243 32222257
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHH----HHHHHHHcCCCcEEEEEcCCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAG----AYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~----~l~~a~~~~~~P~~irl~r~~ 578 (719)
...+++.+-... +.+.+++++.. +++.|.....|||+|-+|...
T Consensus 115 ~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 115 AANLPRPLVKWS-YEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GGGSSTTSCSCE-ECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHHHhhHhh-hcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 778888877654 34445554444 444555445689999998753
No 63
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=88.67 E-value=0.94 Score=51.90 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=78.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++-+ .-|++++-+|-|+|+... +|.+ .|..+=..-++..|.++-+.+.||+++....... .|. | .+|.+..
T Consensus 71 ~~i~~-~hE~~Aa~aA~GyAr~tg--kpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~g~-~-~~Q~~d~ 145 (604)
T 2x7j_A 71 SVHVQ-IDERSAGFFALGLAKAKQ--RPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREV-G-APQAINQ 145 (604)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHT--SCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGSSS-C-CTTCCCC
T ss_pred eEEEe-cChHHHHHHHHHHHHhhC--CCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhCC-C-CCCcCcH
Confidence 56555 899999999999998532 6644 4566666677777877778899999887433332 232 2 3677777
Q ss_pred hhHHcCCCCeEEEe--eCC--------HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLR--PAD--------GNETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~--P~d--------~~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
..+++.+-...... |.+ +..+..+++.|.....|||+|-+|..
T Consensus 146 ~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 146 HFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp TTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred HHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 78888776654433 444 33555566666543579999999875
No 64
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=88.36 E-value=1.4 Score=51.33 Aligned_cols=113 Identities=13% Similarity=0.041 Sum_probs=80.1
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
|++-+ .-|++++-+|-|+|+. | +|.+ .++.+=..-++..|.++-+.++||+++........-..| .+|.+..
T Consensus 122 ~~v~~-~hE~~Aa~aAdGyAr~tG---kpgvv~~TsGpG~~N~~~gia~A~~d~vPllvItG~~~~~~~g~~-a~Q~~Dq 196 (677)
T 1t9b_A 122 NFVLP-KHEQGAGHMAEGYARASG---KPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTD-AFQEADV 196 (677)
T ss_dssp EEECC-SSHHHHHHHHHHHHHHHS---SCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTTTSC-CTTCCCH
T ss_pred eEEEe-CChHHHHHHHHHHHHHHC---CCEEEEECCChHHHHHHHHHHHHHHcCCCEEEEeCCCChhhcCCC-CccccCH
Confidence 56654 8999999999999986 5 5644 456666667777787777889999988743333221122 4677888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSR 576 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r 576 (719)
..+++.+-...+. ..+++++...++.|++ ...|||+|-+|+
T Consensus 197 ~~i~~~~tk~~~~-v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 197 VGISRSCTKWNVM-VKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HHHTGGGSSEEEE-CCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHHhhhheeEEEE-cCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 8899887766544 4467777777776664 247999999984
No 65
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=88.01 E-value=2 Score=49.17 Aligned_cols=115 Identities=10% Similarity=0.049 Sum_probs=80.6
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
|++- ...|++++-+|-|+|+. |. +|.+ .+..+=..-++..|.++.+.+.||+++........-..| .+|.+..
T Consensus 67 ~~i~-~~~E~~Aa~~A~GyAr~tgg--~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~~~~-~~Q~~d~ 142 (616)
T 2pan_A 67 RHIL-ARHVEGASHMAEGYTRATAG--NIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKE-DFQAVDI 142 (616)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHSTT--CCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGTTTT-CTTCCCH
T ss_pred cEEe-eCCHHHHHHHHHHHHHhcCC--CceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCcc-cccccCH
Confidence 4444 48999999999999986 33 5543 456666667778888888889999988744333322223 3666777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
..+++.+-.... ...++.++..+++.|++. ..|||+|-+|..
T Consensus 143 ~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 143 EAIAKPVSKMAV-TVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp HHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHHHhhc-ccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 889998876654 445677777777776642 368999998763
No 66
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=87.27 E-value=0.91 Score=51.52 Aligned_cols=115 Identities=10% Similarity=-0.010 Sum_probs=78.1
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCC-CCCCCCC
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGE-DGPTHQP 531 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~-dG~THq~ 531 (719)
=|++.+ .-|++++-+|-|+|+. | +|.+ .+..+=..-++..|.++-+.+.||+++....... .|. .| .+|.
T Consensus 48 i~~i~~-~~E~~Aa~~A~GyAr~tg---~pgv~~~TsGpG~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~ 122 (568)
T 2c31_A 48 QRFYSF-RHEQHAGYAASIAGYIEG---KPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQG-DYEE 122 (568)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHS---SCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCC-CTTC
T ss_pred CcEEEe-CcHHHHHHHHHHHHHHhC---CCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEccCCCccccCCCCC-cccc
Confidence 455555 8999999999999987 6 5644 3566656667777877778899999887432222 231 23 4677
Q ss_pred hhhhhHHcCCCCeEEEeeCCHHHHHHHHH----HHHHcCCCcEEEEEcCC
Q 005021 532 IEHLASFRAMPNILMLRPADGNETAGAYK----VAVANRKRPSILALSRQ 577 (719)
Q Consensus 532 ~edia~lr~iPnl~V~~P~d~~e~~~~l~----~a~~~~~~P~~irl~r~ 577 (719)
+.+..+++.+-...... .+++++...+. .|.....|||+|-+|..
T Consensus 123 ~dq~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 123 MDQMNVARPHCKASFRI-NSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp CCHHHHSGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred cCHHHHHHhhhheeeec-CCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 77888999887665443 45545555444 44432579999999875
No 67
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=87.25 E-value=2 Score=48.51 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=76.1
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++.+ .-|++++-+|-|+|+. | +|.+ .++.+=..-++..|.++-..+.||+++....... .| .| .+|-+.
T Consensus 43 ~~i~~-~~E~~Aa~~A~GyAr~tg---~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~~~~~~~~-~~-~~Q~~d 116 (549)
T 3eya_A 43 EWMST-RHEEVAAFAAGAEAQLSG---ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIG-SG-YFQETH 116 (549)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS---SCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEESCGGGTT-SC-CTTCCC
T ss_pred eEEEe-CChHHHHHHHHHHHHHhC---CCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCCCchhhcC-CC-CCCccC
Confidence 55554 7999999999999985 5 5554 3566656667777877778899999887433322 23 23 367778
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHH----HHHHHHHcCCCcEEEEEcC
Q 005021 534 HLASFRAMPNILMLRPADGNETAG----AYKVAVANRKRPSILALSR 576 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~----~l~~a~~~~~~P~~irl~r 576 (719)
+..+++.+-..... ..+++++.. +++.|.. ..+|++|-+|.
T Consensus 117 ~~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~ 161 (549)
T 3eya_A 117 PQELFRECSHYCEL-VSSPEQIPQVLAIAMRKAVL-NRGVSVVVLPG 161 (549)
T ss_dssp HHHHTSTTCSEEEE-CCSGGGHHHHHHHHHHHHHH-TTSEEEEEEEH
T ss_pred HHHHHhhhhheEEE-eCCHHHHHHHHHHHHHHHhh-CCCCEEEEeCh
Confidence 88999988765433 345555444 4455554 57999999886
No 68
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=87.09 E-value=1.4 Score=50.04 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=77.8
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++-+ .-|++++-+|-|+|+... +|-+ .|..+=..-++..|.++-+.+.||+++........-..| .+|-+...
T Consensus 51 ~~i~~-~hE~~Aa~aAdGyAr~tG--~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~~~g~~-~~Qe~d~~ 126 (578)
T 3lq1_A 51 KIYVD-VDERSAGFFALGLAKASK--RPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVG-APQAMDQL 126 (578)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHC--CCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGTTSS-CTTCCCCT
T ss_pred eEEEe-cCcHHHHHHHHHHHHhhC--CCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhhcCC-CCCCcCHh
Confidence 56655 799999999999997532 5554 355555566677777777889999988743222221123 46777777
Q ss_pred hHHcCCCCeEEE--eeCCHH--------HHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILML--RPADGN--------ETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~--~P~d~~--------e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
.+++.+-..... .|.+.. .+..+++.|.....|||+|-+|..
T Consensus 127 ~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 127 HLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp TTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred hHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 888877665433 455533 355666666644589999999974
No 69
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=86.28 E-value=3.3 Score=46.90 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=74.5
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCC-CCC
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPT-HQP 531 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~T-Hq~ 531 (719)
+.+.+-...-|++++-+|-|+|+... +|.+ .+..+=..-++..|.++-+.+.||+++....... .|.+... ||.
T Consensus 58 ~~~~~i~~~~E~~Aa~~A~GyAr~tg--kp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~ 135 (565)
T 2nxw_A 58 QILPLHTLSHEPAVGFAADAAARYSS--TLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQG 135 (565)
T ss_dssp CSSCEEECSSHHHHHHHHHHHHHHHT--SCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC----
T ss_pred CCcEEEecCcHHHHHHHHHHHHHHhC--CCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeec
Confidence 44444556999999999999998632 5644 3566656667777777778899999887443333 3433333 433
Q ss_pred --hh-hhhHHcCCCCeEEEe--eCCH-HHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 532 --IE-HLASFRAMPNILMLR--PADG-NETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 532 --~e-dia~lr~iPnl~V~~--P~d~-~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
+. +..+++.+-...... |.+. ..+..+++.|... .+||+|-+|+.
T Consensus 136 q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~D 186 (565)
T 2nxw_A 136 RTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ-SRPVYLEIPRN 186 (565)
T ss_dssp ---CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-TCCEEEEEEGG
T ss_pred cchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-CCCEEEECChh
Confidence 33 578898876644333 3332 3455566666643 69999999964
No 70
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=86.18 E-value=3.3 Score=46.85 Aligned_cols=117 Identities=16% Similarity=0.053 Sum_probs=75.9
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCC-----
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQP----- 531 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~----- 531 (719)
|++-+ .-|++++-+|-|+|+... .-.++.+..+=..-++..|.++-+.+.||+++....... .+.+...||.
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~ 120 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTD 120 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSC
T ss_pred eEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccc
Confidence 56655 899999999999998741 122334566655667777777777899999887443333 2433334553
Q ss_pred -hhhhhHHcCCCCeEEEeeCCHHHHH----HHHHHHHHcCCCcEEEEEcCCC
Q 005021 532 -IEHLASFRAMPNILMLRPADGNETA----GAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 532 -~edia~lr~iPnl~V~~P~d~~e~~----~~l~~a~~~~~~P~~irl~r~~ 578 (719)
+....+++.+--.. +...+++++. .+++.|... .+||+|-+|...
T Consensus 121 ~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~-~GPV~l~iP~dv 170 (568)
T 2wvg_A 121 YHYQLEMAKNITAAA-EAIYTPEEAPAKIDHVIKTALRE-KKPVYLEIACNI 170 (568)
T ss_dssp CCHHHHHHTTSCSCE-EEECSGGGHHHHHHHHHHHHHHH-TCCEEEEEEGGG
T ss_pred hHHHHHHHHhhEeEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhH
Confidence 24578898877654 3334444444 455556543 599999998753
No 71
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=86.02 E-value=3.4 Score=46.74 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=75.0
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh---
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 532 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~--- 532 (719)
|++. ...|++++.+|-|+|+.. | ..+| .+..+=..-++..|.++-+.+.||+++....... .+.+-..||.+
T Consensus 43 ~~v~-~~~E~~Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 43 KQIY-CCNELNCGFSAEGYARSN-G-AAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHH-S-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHhhc-C-CeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCc
Confidence 5555 489999999999999874 2 3344 4556555666777777777899999887443333 23332345432
Q ss_pred ---hhhhHHcCCCCeEEEeeCCHH----HHHHHHHHHHHcCCCcEEEEEcCCC
Q 005021 533 ---EHLASFRAMPNILMLRPADGN----ETAGAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 533 ---edia~lr~iPnl~V~~P~d~~----e~~~~l~~a~~~~~~P~~irl~r~~ 578 (719)
....+++.+--... .+.+++ .+..+++.|... .+||+|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~~~-~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d~ 170 (566)
T 2vbi_A 120 DYSYQLEMARQVTCAAE-SITDAHSAPAKIDHVIRTALRE-RKPAYLDIACNI 170 (566)
T ss_dssp CCTHHHHHHHTTCSEEE-EECSSSSHHHHHHHHHHHHHHH-TCCEEEEEETTT
T ss_pred chHHHHHHHhhhEeEEE-EeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 45788998865433 333333 345566666654 599999998753
No 72
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=85.70 E-value=2.5 Score=47.74 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=78.1
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCC-CCCCCCCh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGE-DGPTHQPI 532 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~-dG~THq~~ 532 (719)
=|++.+ .-|++++-+|-|+|+... +|.+ .|..+=..-++..|.++-+.+.||+++....... .+. .| .+|.+
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg--~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~ 121 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQ--KPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQG-DYEEL 121 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTSC-CTTCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhC--CCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCC-ccccc
Confidence 355555 899999999999998732 6644 4566656667777777778899999887432222 121 23 46777
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHH----HHHHHcCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAY----KVAVANRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l----~~a~~~~~~P~~irl~r~ 577 (719)
.+..+++.+-...... .+++++...+ +.|.....|||+|-+|..
T Consensus 122 dq~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 122 DQMNAAKPYAKAAFRV-NQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp CHHHHHGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cHHHHHHHhhheeeec-CCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 8888999887765444 3444454444 444433579999999875
No 73
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=85.41 E-value=3.9 Score=46.18 Aligned_cols=115 Identities=18% Similarity=0.103 Sum_probs=76.2
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh---
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 532 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~--- 532 (719)
|++-+ .-|++++-+|-|+|+... .++| .+..+=..-++..|.++-+.+.||+++....... .+.+-..||.+
T Consensus 44 ~~v~~-~~E~~Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAGN-ANELNAAYAADGYARIKG--MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECCC-SSHHHHHHHHHHHHHHHS--CEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEcc-CchHHHHHHHHHHHHhhC--CcEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 55554 899999999999998752 4444 4566655666777777777899999887433222 12233334322
Q ss_pred ---hhhhHHcCCCCeEEEeeCC----HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 533 ---EHLASFRAMPNILMLRPAD----GNETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 533 ---edia~lr~iPnl~V~~P~d----~~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
+...+++.+--..... .+ +..+..+++.|... .+||+|-+|..
T Consensus 121 ~~q~~~~~~~~~~k~~~~v-~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d 170 (563)
T 2vk8_A 121 DFTVFHRMSANISETTAMI-TDIATAPAEIDRCIRTTYVT-QRPVYLGLPAN 170 (563)
T ss_dssp CSSHHHHHHHTTCSEEEEC-CCTTTHHHHHHHHHHHHHHH-TSCEEEEEETT
T ss_pred chHHHHHHhhhhEEEEEEe-CCHHHHHHHHHHHHHHHHhC-CCCEEEEechh
Confidence 3467888877654433 34 35566677777754 59999999875
No 74
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=85.22 E-value=3.3 Score=47.31 Aligned_cols=114 Identities=8% Similarity=-0.046 Sum_probs=76.3
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++-+ .-|++++-+|-|+|+... +|.+ .++.+=..-++..|.++-+.+.||+++....... .+. | .+|-+..
T Consensus 52 ~~i~~-~hE~~Aa~aA~GyAr~tg--~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~-~-~~Q~~d~ 126 (603)
T 4feg_A 52 HYIQV-RHEEVGAMAAAADAKLTG--KIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNM-D-TFQEMNE 126 (603)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTS-C-CTTCCCC
T ss_pred eEEEe-cChHHHHHHHHHHHHHhC--CceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCcccccCC-C-ccccccH
Confidence 56554 899999999999997532 5544 3566656667777877778899999887432222 232 2 3566777
Q ss_pred hhHHcCCCCeEEE--eeCCH-HHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILML--RPADG-NETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~--~P~d~-~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
..+++.+-..... .|.+. ..+..+++.|.. ..||++|-+|..
T Consensus 127 ~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~d 171 (603)
T 4feg_A 127 NPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVD 171 (603)
T ss_dssp GGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEEETT
T ss_pred HHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 7888887665433 33332 234455666665 479999999874
No 75
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=80.23 E-value=5.5 Score=45.03 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=73.9
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh---
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 532 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~--- 532 (719)
|++- ...|++++.+|.|+|+.. | ..+| .+..+-..-++..|.++-+.+.||+++....... .+.+...||.+
T Consensus 65 ~~i~-~~~E~~A~~~A~GyAr~t-G-~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~ 141 (570)
T 2vbf_A 65 KWIG-NANELNASYMADGYARTK-K-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADG 141 (570)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred eEEC-cCcHHHHHHHHHHHHHHh-C-CeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeecccc
Confidence 4444 489999999999999653 1 3333 5677766677777777777899999887433322 23333455522
Q ss_pred ---hhhhHHcCCCCeEEEeeCCHHHHH----HHHHHHHHcCCCcEEEEEcCC
Q 005021 533 ---EHLASFRAMPNILMLRPADGNETA----GAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 533 ---edia~lr~iPnl~V~~P~d~~e~~----~~l~~a~~~~~~P~~irl~r~ 577 (719)
+...+++.+.-.....+. +++. .+++.|... .+||+|-+|..
T Consensus 142 ~~~~~~~~~~~~tk~~~~v~~--~~~~~~l~~A~~~A~~~-~GPV~l~iP~d 190 (570)
T 2vbf_A 142 DFKHFMKMHEPVTAARTLLTA--ENATYEIDRVLSQLLKE-RKPVYINLPVD 190 (570)
T ss_dssp CCCHHHHHTGGGCSEEEECCT--TTHHHHHHHHHHHHHHH-CCCEEEEEEHH
T ss_pred chHHHHHHhhhhEEEEEEECc--ccHHHHHHHHHHHHhhC-CCCEEEEcchh
Confidence 246788887765544443 4444 445555543 59999999864
No 76
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=78.88 E-value=5.6 Score=44.75 Aligned_cols=116 Identities=14% Similarity=0.038 Sum_probs=74.2
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh---
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 532 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~--- 532 (719)
|++- ...|++++-+|.|+|+... .++| .+..+=..-++..|.++-+.+.||+++....... .+.+-..||.+
T Consensus 45 ~~i~-~~~E~~A~~~A~Gyar~tg--~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~ 121 (552)
T 1ovm_A 45 CWVG-CANELNASYAADGYARCKG--FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDG 121 (552)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS--CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHHhhC--CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCC
Confidence 4444 4899999999999998763 4544 4565555566677777778899999887443322 22222333322
Q ss_pred ---hhhhHHcCCCCeEEEeeCC--HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 533 ---EHLASFRAMPNILMLRPAD--GNETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 533 ---edia~lr~iPnl~V~~P~d--~~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
+...+++.+--.....+.+ +..+..+++.|... .+||+|-+|..
T Consensus 122 ~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 170 (552)
T 1ovm_A 122 EFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLMLPAD 170 (552)
T ss_dssp CCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEEEHH
T ss_pred cHHHHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEeehh
Confidence 3456788776655555431 34455566666643 59999998864
No 77
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=77.31 E-value=8.9 Score=40.99 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhc----CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC-----CChhhhh
Q 005021 468 GMGAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH-----QPIEHLA 536 (719)
Q Consensus 468 ~~vg~AaGlA~~----G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH-----q~~edia 536 (719)
..+..|.|+|+. |..-++||.+ -..|.+ -.++.+..++..++||++++.+.+++. .++++ ..+.+++
T Consensus 146 ~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi--~~~~~~~~~~~d~~~~a 223 (368)
T 1w85_A 146 AQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAI--STPVEKQTVAKTLAQKA 223 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEET--TEEGGGTCSCSCSGGGG
T ss_pred ccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccc--eeccccccCCCCHHHHH
Confidence 344556666543 2112344432 466664 346667777889999999997777653 23322 1234444
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 574 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl 574 (719)
---.+|++.| -=.|..++..+++.|++ ..++|++|-.
T Consensus 224 ~a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 224 VAAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp GGTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HHCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4456787765 33478899999998885 2479999865
No 78
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=74.68 E-value=18 Score=38.50 Aligned_cols=110 Identities=17% Similarity=0.134 Sum_probs=65.2
Q ss_pred ccccccchHHHHHHHHHhc----CCCCccEEEe-hhhhHHh-HHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC-----
Q 005021 461 RFGVREHGMGAICNGIALH----SPGLIPYCAT-FFVFTDY-MRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH----- 529 (719)
Q Consensus 461 d~GIaE~~~vg~AaGlA~~----G~~~~Pv~~~-y~~F~~r-a~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH----- 529 (719)
..|+-+ +.+++|.|+|+. +..-++|+.+ -..|.+- .++.+..++..++|+++++.+.+++ ..+++.
T Consensus 142 ~~g~lG-~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~g--i~~~~~~~~~~ 218 (367)
T 1umd_A 142 VASPIA-SHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYA--ISVDYRHQTHS 218 (367)
T ss_dssp CCSSTT-TTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEE--TTEEHHHHCSS
T ss_pred CCchhh-hhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCee--eccChhhccCC
Confidence 444444 344566666543 3212344432 4666544 5666777788999999999777754 333321
Q ss_pred CChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 005021 530 QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 574 (719)
Q Consensus 530 q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl 574 (719)
..+.+++-.-.+|.+.| .-.|..++..+++.|++ ..++|++|-.
T Consensus 219 ~d~~~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 219 PTIADKAHAFGIPGYLV-DGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp SCSGGGGGGTTSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHcCCcEEEe-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 12344444446777764 45677777776766664 2579998875
No 79
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=74.64 E-value=3.7 Score=50.94 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=46.9
Q ss_pred CcEEEEEEccc-ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch-------hh---h-------cchhHHHHHhc
Q 005021 231 DHYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT-------EI---A-------FTENVDKRFEG 292 (719)
Q Consensus 231 ~~~v~~iiGDG-~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~-------~~---~-------~~~~~~~~~~a 292 (719)
+..|||+.||| +++-|.- .|..|...+++=+++|+||+.|+.-+-. +. . ...++.+..++
T Consensus 953 ~~~Vv~i~GDG~~~~mg~~--eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGYG--GLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTHH--HHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcchH--HHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 7877743 7778888898656666677666543311 10 0 11478899999
Q ss_pred cCceEEE
Q 005021 293 LGWHVIW 299 (719)
Q Consensus 293 ~G~~~~~ 299 (719)
||...+.
T Consensus 1031 ~G~~~va 1037 (1231)
T 2c42_A 1031 YGYVYVA 1037 (1231)
T ss_dssp TSSSEEE
T ss_pred CCCCEEE
Confidence 9998875
No 80
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=70.55 E-value=13 Score=40.22 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=60.5
Q ss_pred HHHHHHHHHhc----CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC--CChhhhh---H
Q 005021 469 MGAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--QPIEHLA---S 537 (719)
Q Consensus 469 ~vg~AaGlA~~----G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH--q~~edia---~ 537 (719)
.+..|.|+|+. |..-++||.. -..|.+ -.++.+..++..++||++++.+.+++ ..+++. .+..|++ -
T Consensus 167 ~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~--i~~~~~~~~~~~d~~~~a~ 244 (400)
T 2bfd_A 167 QIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYA--ISTPTSEQYRGDGIAARGP 244 (400)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEE--TTEEGGGTCSSSTTGGGTG
T ss_pred cccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCcee--eeecccccCCCCCHHHHHH
Confidence 34566666653 1112444433 456644 24566777788899999999777654 333332 2223333 2
Q ss_pred HcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 005021 538 FRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 574 (719)
Q Consensus 538 lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl 574 (719)
--.+|.+.| -=.|..++..+++.|++ ..++|++|-.
T Consensus 245 a~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 245 GYGIMSIRV-DGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp GGTCEEEEE-ETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HcCCcEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 334555433 22467888888888875 2479998865
No 81
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=69.59 E-value=15 Score=42.54 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=54.2
Q ss_pred hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCC-CChhhhh-HHcCCCCeEEEee----CCHHHHHHHHHH
Q 005021 490 FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH-QPIEHLA-SFRAMPNILMLRP----ADGNETAGAYKV 561 (719)
Q Consensus 490 y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~TH-q~~edia-~lr~iPnl~V~~P----~d~~e~~~~l~~ 561 (719)
-..|.. ..++.+..++..++| +++++...++ +-+|++. +..+|+. .+++. |+.++.. .|..++..+++.
T Consensus 157 DG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~--~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~l~~Al~~ 233 (673)
T 1r9j_A 157 DGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI--SIDGSTSLSFTEQCHQKYVAM-GFHVIEVKNGDTDYEGLRKALAE 233 (673)
T ss_dssp HHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB--CSSSBGGGTCCCCHHHHHHHT-TCEEEEESCTTTCHHHHHHHHHH
T ss_pred cchhcccHHHHHHHHHHHhCCCcEEEEEECCCC--ccccchhhccCHhHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHH
Confidence 344443 457777777888987 7888755555 4456554 2234444 55554 8888844 467888888888
Q ss_pred HHHcCCCcEEEEE
Q 005021 562 AVANRKRPSILAL 574 (719)
Q Consensus 562 a~~~~~~P~~irl 574 (719)
|.+..++|++|..
T Consensus 234 A~~~~~~P~lI~~ 246 (673)
T 1r9j_A 234 AKATKGKPKMIVQ 246 (673)
T ss_dssp HHHCCSSCEEEEE
T ss_pred HHHcCCCCEEEEE
Confidence 8764689998875
No 82
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=69.46 E-value=15 Score=42.61 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=55.5
Q ss_pred hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC-Chhhh-hHHcCCCCeEEEee---CCHHHHHHHHHHH
Q 005021 490 FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ-PIEHL-ASFRAMPNILMLRP---ADGNETAGAYKVA 562 (719)
Q Consensus 490 y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq-~~edi-a~lr~iPnl~V~~P---~d~~e~~~~l~~a 562 (719)
-..|.. ..++.+..++..++| ++++....++ +-+|+++. ..+|+ ..++++ |+.++.+ .|..++..+++.|
T Consensus 181 DG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~--~i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~l~~Al~~a 257 (690)
T 3m49_A 181 DGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDI--SLDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEAIAKAIEEA 257 (690)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSB--CSSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHHHHHHHHHH
T ss_pred chhhhhccHHHHHHHHHHhCCCeEEEEEECCCe--ecccchhhccchhHHHHHHHc-CCcEEEEecCCCHHHHHHHHHHH
Confidence 445543 467777777888987 6666655554 45666642 22333 345555 7889988 6788888899888
Q ss_pred HHcCCCcEEEEE
Q 005021 563 VANRKRPSILAL 574 (719)
Q Consensus 563 ~~~~~~P~~irl 574 (719)
.+..++|++|..
T Consensus 258 ~~~~~~P~lI~v 269 (690)
T 3m49_A 258 KADEKRPTLIEV 269 (690)
T ss_dssp HHCCSSCEEEEE
T ss_pred HhcCCCCEEEEE
Confidence 753589999875
No 83
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=66.50 E-value=12 Score=39.95 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=60.5
Q ss_pred hHHHHHHHHHhc----CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhH-HcC
Q 005021 468 GMGAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLAS-FRA 540 (719)
Q Consensus 468 ~~vg~AaGlA~~----G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~-lr~ 540 (719)
..+.+|.|+|+. |..-++||.. -..|.+ -.++.+..++..++||++++.+.+++.+..-.......|++- .-.
T Consensus 144 ~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g 223 (365)
T 2ozl_A 144 AQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF 223 (365)
T ss_dssp THHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTT
T ss_pred hhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHHHhCC
Confidence 334556666543 2102344432 455544 356677778899999999997777654321001111122221 124
Q ss_pred CCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 005021 541 MPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 574 (719)
Q Consensus 541 iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl 574 (719)
+|++.| -=-|..++..+++.|++ ..++|++|-+
T Consensus 224 ~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 224 IPGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp SCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 777665 33478888888888874 3589999864
No 84
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=63.23 E-value=21 Score=41.03 Aligned_cols=101 Identities=19% Similarity=0.199 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCC-----------CCccEEEe-hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC-Chh
Q 005021 469 MGAICNGIALHSP-----------GLIPYCAT-FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ-PIE 533 (719)
Q Consensus 469 ~vg~AaGlA~~G~-----------~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq-~~e 533 (719)
.++.|.|||+.-+ ..+.||.+ -..|.. ..++.+..++..++| ++++....+++ -+|++.. ..+
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~--i~~~~~~~~~~ 196 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNIS--IEGDVGLAFNE 196 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--TTEEGGGTCCC
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcc--cccchhhhcCh
Confidence 4667777776421 01333432 455553 567777778888987 77777555554 3454432 123
Q ss_pred hh-hHHcCCCCeEEEeeC---CHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 534 HL-ASFRAMPNILMLRPA---DGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 534 di-a~lr~iPnl~V~~P~---d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
|+ ..++++ |+.++ +. |..++..+++.|.+ .++|++|..
T Consensus 197 d~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~-~~~P~lI~v 238 (632)
T 3l84_A 197 NVKMRFEAQ-GFEVL-SINGHDYEEINKALEQAKK-STKPCLIIA 238 (632)
T ss_dssp CHHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHHT-CSSCEEEEE
T ss_pred hHHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 33 355665 78877 66 57888888888875 689999875
No 85
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=60.25 E-value=26 Score=37.88 Aligned_cols=102 Identities=12% Similarity=0.011 Sum_probs=60.0
Q ss_pred HHHHHHHHhc----CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC--C-Chhh---hhH
Q 005021 470 GAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--Q-PIEH---LAS 537 (719)
Q Consensus 470 vg~AaGlA~~----G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH--q-~~ed---ia~ 537 (719)
+.+|.|+|+. |..-++||.+ -..|.+ -.++.+..++..++||++|+.+.+++. .+++. . ...| .+-
T Consensus 187 lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi--~~~~~~~~~~~~d~a~~a~ 264 (407)
T 1qs0_A 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAI--STFQAIAGGESTTFAGRGV 264 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEET--TEEGGGGTTTTCCSTHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcce--eeccccccCCCCCHHHHHH
Confidence 4456666543 2112444432 455544 345667777889999999997776653 22222 1 1233 333
Q ss_pred HcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEE
Q 005021 538 FRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILAL 574 (719)
Q Consensus 538 lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl 574 (719)
--.+|.+.| -=.|..++..+++.|++. .++|++|-.
T Consensus 265 a~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 265 GCGIASLRV-DGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp HTTCEEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HcCCeEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 346676654 233677888888888742 579998865
No 86
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=60.14 E-value=17 Score=42.05 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=52.9
Q ss_pred hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCC-CChhhhh-HHcCCCCeEEEeeC----CHHHHHHHHHH
Q 005021 490 FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH-QPIEHLA-SFRAMPNILMLRPA----DGNETAGAYKV 561 (719)
Q Consensus 490 y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~TH-q~~edia-~lr~iPnl~V~~P~----d~~e~~~~l~~ 561 (719)
-..|.. ..++.+..++..++| +++++...+++ -+|++. +..+|+. .+++. |+.++.+. |..++..+++.
T Consensus 157 DG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~--i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~l~~al~~ 233 (680)
T 1gpu_A 157 DGCLQEGISSEASSLAGHLKLGNLIAIYDDNKIT--IDGATSISFDEDVAKRYEAY-GWEVLYVENGNEDLAGIAKAIAQ 233 (680)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--TTEEGGGTCCCCHHHHHHHH-TCEEEEESCTTTCHHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHhCCCcEEEEEECCCce--EecccccccCccHHHHHHhc-CCeEEEEecCCCCHHHHHHHHHH
Confidence 344443 456777777888988 88777555554 345544 2233443 44544 77777455 56788888888
Q ss_pred HHHcCCCcEEEEE
Q 005021 562 AVANRKRPSILAL 574 (719)
Q Consensus 562 a~~~~~~P~~irl 574 (719)
|.+..++|++|..
T Consensus 234 A~~~~~~P~lI~~ 246 (680)
T 1gpu_A 234 AKLSKDKPTLIKM 246 (680)
T ss_dssp HHHCTTSCEEEEE
T ss_pred HHHCCCCCEEEEE
Confidence 8864589998875
No 87
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=59.87 E-value=20 Score=41.42 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=53.6
Q ss_pred hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCC-CChhhhh-HHcCCCCeEEEeeC---CHHHHHHHHHHH
Q 005021 490 FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH-QPIEHLA-SFRAMPNILMLRPA---DGNETAGAYKVA 562 (719)
Q Consensus 490 y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~TH-q~~edia-~lr~iPnl~V~~P~---d~~e~~~~l~~a 562 (719)
-..|.. ..++.+..++..++| +++++...+++ -+|++. +..+|+. .+++. |+.++.+. |..++..+++.|
T Consensus 155 DG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~--i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a 231 (669)
T 2r8o_A 155 DGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGIS--IDGHVEGWFTDDTAMRFEAY-GWHVIRDIDGHDAASIKRAVEEA 231 (669)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--TTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHH
T ss_pred HhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcE--eccccccccCccHHHHHHHC-CCeEEeEECCCCHHHHHHHHHHH
Confidence 344443 457777777888988 77777655654 345544 2234443 45554 77776343 688888899888
Q ss_pred HHcCCCcEEEEE
Q 005021 563 VANRKRPSILAL 574 (719)
Q Consensus 563 ~~~~~~P~~irl 574 (719)
.+..++|++|..
T Consensus 232 ~~~~~~P~lI~~ 243 (669)
T 2r8o_A 232 RAVTDKPSLLMC 243 (669)
T ss_dssp HHCCSSCEEEEE
T ss_pred HhcCCCCEEEEE
Confidence 864589998875
No 88
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=59.29 E-value=20 Score=41.57 Aligned_cols=81 Identities=22% Similarity=0.208 Sum_probs=52.9
Q ss_pred hhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCC-CChhhhh-HHcCCCCeEEEee---CCHHHHHHHHHHHH
Q 005021 491 FVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH-QPIEHLA-SFRAMPNILMLRP---ADGNETAGAYKVAV 563 (719)
Q Consensus 491 ~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~TH-q~~edia-~lr~iPnl~V~~P---~d~~e~~~~l~~a~ 563 (719)
..+.. ..++.+..++..++| +++++...+++ -+|++. +..+|++ .+++. |+.++.- -|..++..+++.|.
T Consensus 178 G~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~s--i~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~al~~Al~~A~ 254 (700)
T 3rim_A 178 GDIEEGVTSEASSLAAVQQLGNLIVFYDRNQIS--IEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVGIEEAIANAQ 254 (700)
T ss_dssp HHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--TTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHcCCCcEEEEEECCCcc--cccchhhccchhHHHHHHHc-CCeEEEECCCCCHHHHHHHHHHHH
Confidence 34433 457777778889997 88888555554 345543 2234433 44544 6777764 37777888888887
Q ss_pred HcCCCcEEEEE
Q 005021 564 ANRKRPSILAL 574 (719)
Q Consensus 564 ~~~~~P~~irl 574 (719)
...++|++|..
T Consensus 255 ~~~~~P~lI~~ 265 (700)
T 3rim_A 255 AVTDRPSFIAL 265 (700)
T ss_dssp HCCSSCEEEEE
T ss_pred HcCCCCEEEEE
Confidence 64589999975
No 89
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=58.09 E-value=34 Score=39.50 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=50.9
Q ss_pred hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC-Chhhh-hHHcCCCCeEEEeeC---CHHHHHHHHHHH
Q 005021 490 FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ-PIEHL-ASFRAMPNILMLRPA---DGNETAGAYKVA 562 (719)
Q Consensus 490 y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq-~~edi-a~lr~iPnl~V~~P~---d~~e~~~~l~~a 562 (719)
-..|.. ..++.+..++..++| ++++....++ +-+|++.. ..+|+ ..+++. |+.++.+. |..++..+++.|
T Consensus 157 DG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~--~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~A 233 (663)
T 3kom_A 157 DGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNI--SIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVAIEKAINEA 233 (663)
T ss_dssp HHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-------CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHH
T ss_pred chhhhhchHHHHHHHHHHhCCCeEEEEEECCCc--ccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHHHHHHHHHH
Confidence 344443 456777778888998 6777755555 44555442 12333 355555 78877555 678888888888
Q ss_pred HHcCCCcEEEEE
Q 005021 563 VANRKRPSILAL 574 (719)
Q Consensus 563 ~~~~~~P~~irl 574 (719)
.+..++|++|..
T Consensus 234 ~~~~~~P~lI~~ 245 (663)
T 3kom_A 234 HSQQQKPTLICC 245 (663)
T ss_dssp HHCSSSCEEEEE
T ss_pred HhcCCCCEEEEE
Confidence 753589999875
No 90
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=56.80 E-value=43 Score=38.50 Aligned_cols=81 Identities=23% Similarity=0.261 Sum_probs=53.4
Q ss_pred hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCC-CChhhhh-HHcCCCCeEEEeeC---CHHHHHHHHHHH
Q 005021 490 FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH-QPIEHLA-SFRAMPNILMLRPA---DGNETAGAYKVA 562 (719)
Q Consensus 490 y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~TH-q~~edia-~lr~iPnl~V~~P~---d~~e~~~~l~~a 562 (719)
-..|.. ..++.+..++..++| +++++...+++ -+|++. +..+|+. .+++. |+.++.+. |..++..+++.|
T Consensus 159 DG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~--i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a 235 (651)
T 2e6k_A 159 DGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRIS--IDGPTDLAFTEDVLARYRAY-GWQTLRVEDVNDLEALRKAIKLA 235 (651)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEE--TTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTCHHHHHHHHHHH
T ss_pred hhhhchhHHHHHHHHHHHcCCCeEEEEEECCCcc--cccccccccCccHHHHHHhC-CCeEEEEeCCCCHHHHHHHHHHH
Confidence 344443 457777777888988 88887666654 344443 1123443 55554 78877555 578888888888
Q ss_pred HHcCCCcEEEEE
Q 005021 563 VANRKRPSILAL 574 (719)
Q Consensus 563 ~~~~~~P~~irl 574 (719)
.+ .++|++|..
T Consensus 236 ~~-~~~P~lI~~ 246 (651)
T 2e6k_A 236 KL-DERPTLIAV 246 (651)
T ss_dssp HH-SSSCEEEEE
T ss_pred HH-CCCCEEEEE
Confidence 86 689998875
No 91
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=56.14 E-value=45 Score=38.50 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=53.5
Q ss_pred hhhhHH-hHHHHHHHHhhhcC-CEEEEEecCCCccCCCCCCC-CChhhh-hHHcCCCCeEEEeeC----CHHHHHHHHHH
Q 005021 490 FFVFTD-YMRAAIRISALCEA-GVIYVMTHDSIGLGEDGPTH-QPIEHL-ASFRAMPNILMLRPA----DGNETAGAYKV 561 (719)
Q Consensus 490 y~~F~~-ra~dqir~~a~~~~-pV~~v~~~~g~g~g~dG~TH-q~~edi-a~lr~iPnl~V~~P~----d~~e~~~~l~~ 561 (719)
-..|.. ..++.+..++..++ |+++++...+++ -+|++. +..+|+ ..+++. |+.++.+. |..++..+++.
T Consensus 168 DG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~--i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~l~~al~~ 244 (675)
T 1itz_A 168 DGCQMEGIANEACSLAGHWGLGKLIAFYDDNHIS--IDGDTEIAFTEDVSTRFEAL-GWHTIWVKNGNTGYDDIRAAIKE 244 (675)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--TTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTTCHHHHHHHHHH
T ss_pred HhHhchhHHHHHHHHHHHhCCCcEEEEEECCCcc--CCCChhhhcChhHHHHHHhC-CCEEEEEecCCCCHHHHHHHHHH
Confidence 344443 45777777788887 588888666654 344443 113343 356665 78887565 56688888888
Q ss_pred HHHcCCCcEEEEE
Q 005021 562 AVANRKRPSILAL 574 (719)
Q Consensus 562 a~~~~~~P~~irl 574 (719)
|.+..++|++|..
T Consensus 245 a~~~~~~P~lI~~ 257 (675)
T 1itz_A 245 AKAVTDKPTLIKV 257 (675)
T ss_dssp HHHCCSSCEEEEE
T ss_pred HHHCCCCeEEEEE
Confidence 8763589998875
No 92
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=55.41 E-value=15 Score=42.79 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=53.8
Q ss_pred hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC-Chhhh-hHHcCCCCeEEEeeC---CHHHHHHHHHHH
Q 005021 490 FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ-PIEHL-ASFRAMPNILMLRPA---DGNETAGAYKVA 562 (719)
Q Consensus 490 y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq-~~edi-a~lr~iPnl~V~~P~---d~~e~~~~l~~a 562 (719)
-..|.. ..++.+..++..++| +++++.+.++ +-+|++.. ..+|+ ..++++ |+.++.|. |..++..+++.|
T Consensus 196 DG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~--~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~Al~~A 272 (711)
T 3uk1_A 196 DGCLMEGISHEACSLAGTLKLNKLIALYDDNGI--SIDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDAIDAAIAKA 272 (711)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE--ETTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHH
T ss_pred CcchhhccHHHHHHHHHHhCCCcEEEEEECCCc--ccccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHH
Confidence 345543 456777778888998 7777755555 34555542 22333 355555 77777764 678888888888
Q ss_pred HHcCCCcEEEEE
Q 005021 563 VANRKRPSILAL 574 (719)
Q Consensus 563 ~~~~~~P~~irl 574 (719)
.+ .++|++|..
T Consensus 273 ~~-~~~P~lI~v 283 (711)
T 3uk1_A 273 KR-SDKPSLICC 283 (711)
T ss_dssp TT-CSSCEEEEE
T ss_pred Hh-CCCCEEEEE
Confidence 75 689999875
No 93
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=55.08 E-value=28 Score=41.74 Aligned_cols=111 Identities=11% Similarity=0.106 Sum_probs=67.7
Q ss_pred cccccccchHHHHHHHHHhcCC---------CCccEEEe-hhhh-HH-hHHHHHHHHhhhcCC---EEEEEecCCCccCC
Q 005021 460 VRFGVREHGMGAICNGIALHSP---------GLIPYCAT-FFVF-TD-YMRAAIRISALCEAG---VIYVMTHDSIGLGE 524 (719)
Q Consensus 460 ~d~GIaE~~~vg~AaGlA~~G~---------~~~Pv~~~-y~~F-~~-ra~dqir~~a~~~~p---V~~v~~~~g~g~g~ 524 (719)
++.+..++. +.+|.|+|+.-+ ..++|+.+ -..| .+ -.++.+..++..++| +++++.+.+++.+
T Consensus 318 ~~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~is- 395 (933)
T 2jgd_A 318 FNPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFT- 395 (933)
T ss_dssp CCCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-----
T ss_pred ccCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCcccc-
Confidence 455555554 677778876421 12344433 5666 33 567888888899999 8888877776543
Q ss_pred CC-CCC-----CChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 005021 525 DG-PTH-----QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 574 (719)
Q Consensus 525 dG-~TH-----q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl 574 (719)
+ ++. ..+.+++-.-.+|.+.| ---|..++..+++.|.+ ..++|++|-.
T Consensus 396 -t~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe~ 452 (933)
T 2jgd_A 396 -TSNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFIDL 452 (933)
T ss_dssp ------------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred -CCCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3 232 23456665667787766 45567778888887773 2478988864
No 94
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=52.61 E-value=12 Score=35.64 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=25.4
Q ss_pred CCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEec
Q 005021 606 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 639 (719)
Q Consensus 606 ~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~ 639 (719)
.||+||+.|. --+.+|-.|.+.|++|.|++-
T Consensus 3 ~dV~IIGaGp---aGL~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGI---AGLSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSH---HHHHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCH---HHHHHHHHHHHCCCCEEEEEC
Confidence 4899999998 345566778889999999984
No 95
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=51.43 E-value=43 Score=38.25 Aligned_cols=100 Identities=13% Similarity=0.232 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcC----C-CCccEEEe-hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC--Chhhh-h
Q 005021 468 GMGAICNGIALHS----P-GLIPYCAT-FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ--PIEHL-A 536 (719)
Q Consensus 468 ~~vg~AaGlA~~G----~-~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq--~~edi-a 536 (719)
..+++|.|+|+.. . ..+.||.+ -..|.. ..++.+..++..++| ++++....++ +.+|++.. ..+|+ .
T Consensus 125 ~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~--~i~~~~~~~~~~~~~~~ 202 (616)
T 3mos_A 125 QGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRL--GQSDPAPLQHQMDIYQK 202 (616)
T ss_dssp CHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSB--CSSSBCTTTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCC--CCcCCcccccChHHHHH
Confidence 3466778887642 1 02344433 456653 567778888888987 5556644554 44555542 34453 3
Q ss_pred HHcCCCCeEEEeeCC---HHHHHHHHHHHHHcCCCcEEEEE
Q 005021 537 SFRAMPNILMLRPAD---GNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d---~~e~~~~l~~a~~~~~~P~~irl 574 (719)
.++++ |+.++ +.| ..++..+++.+ .++|++|..
T Consensus 203 ~~~a~-G~~~~-~VdG~d~~~l~~al~~~---~~~P~lI~v 238 (616)
T 3mos_A 203 RCEAF-GWHAI-IVDGHSVEELCKAFGQA---KHQPTAIIA 238 (616)
T ss_dssp HHHHT-TCEEE-EEETTCHHHHHHHHHSC---CSSCEEEEE
T ss_pred HHHHc-CCeEE-EEcCCCHHHHHHHHHhc---CCCCEEEEE
Confidence 45555 77766 665 45555555432 478998875
No 96
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=47.37 E-value=78 Score=36.07 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=60.6
Q ss_pred HHHHHHHHHhc----CCCCccEEEe--hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCC---Ch------
Q 005021 469 MGAICNGIALH----SPGLIPYCAT--FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ---PI------ 532 (719)
Q Consensus 469 ~vg~AaGlA~~----G~~~~Pv~~~--y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq---~~------ 532 (719)
.+..|.|+|+. |. =++++++ -..|.. ..++.+..++..++|+++++.+.+++ -++++.. ..
T Consensus 128 gl~~AvG~AlA~k~~~~-~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~IvnnN~~~--i~~~~~~~~~~~~~l~~~ 204 (629)
T 2o1x_A 128 SLTNALGMALARDAQGK-DFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMS--ISENVGAMNKFMRGLQVQ 204 (629)
T ss_dssp HHHHHHHHHHHHHHHTC-CCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECSBS--SSBCCSSHHHHC------
T ss_pred cHhHHHHHHHHHHHhCC-CCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEECCCCC--CCCChhHHHHHHHHHhhc
Confidence 45667777765 22 1444443 466643 46777888888889999998666654 3343320 00
Q ss_pred ------------------h----------h-h---------hHHcCCCCeEEE---eeCCHHHHHHHHHHHHHcCCCcEE
Q 005021 533 ------------------E----------H-L---------ASFRAMPNILML---RPADGNETAGAYKVAVANRKRPSI 571 (719)
Q Consensus 533 ------------------e----------d-i---------a~lr~iPnl~V~---~P~d~~e~~~~l~~a~~~~~~P~~ 571 (719)
. | + .++.++ |+..+ -..|..++..+++.|.. .++|++
T Consensus 205 ~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~-G~~~~g~vdG~d~~~l~~al~~A~~-~~~P~l 282 (629)
T 2o1x_A 205 KWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAM-GVRYVGPVDGHNVQELVWLLERLVD-LDGPTI 282 (629)
T ss_dssp ---------------------------------------CCCTTGGG-TCEEEEEEESSCHHHHHHHHHHHTT-SSSEEE
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhc-CCeEEeeECCcCHHHHHHHHHHHHh-cCCCEE
Confidence 0 1 1 122221 33433 34588999999998875 589998
Q ss_pred EEE
Q 005021 572 LAL 574 (719)
Q Consensus 572 irl 574 (719)
|..
T Consensus 283 I~v 285 (629)
T 2o1x_A 283 LHI 285 (629)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 97
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=47.12 E-value=95 Score=35.29 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=61.2
Q ss_pred CccccccccchHHHHHHHHHhc----CCCCccEEEe--hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCC
Q 005021 458 RNVRFGVREHGMGAICNGIALH----SPGLIPYCAT--FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ 530 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~----G~~~~Pv~~~--y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq 530 (719)
.++.+|.. ...+..|.|+|+. |. =++++++ -..|.. ..++.+..++..++|+++++.+.+++ -++++..
T Consensus 116 ~~~~~G~~-G~gl~~A~G~AlA~~~~~~-~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~--i~~~~~~ 191 (621)
T 2o1s_A 116 DVLSVGHS-STSISAGIGIAVAAEKEGK-NRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMS--ISENVGA 191 (621)
T ss_dssp CCSCCSSS-SCHHHHHHHHHHHHHHHTS-CCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC-----------
T ss_pred CccCCccc-chHHHHHHHHHHHHHHhCC-CCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcc--cCCCcch
Confidence 44444432 3446677888764 21 1344443 566653 46777888888889999999766654 3333321
Q ss_pred -C------------------hhhh-------------------------hHHcCCCCeEEE---eeCCHHHHHHHHHHHH
Q 005021 531 -P------------------IEHL-------------------------ASFRAMPNILML---RPADGNETAGAYKVAV 563 (719)
Q Consensus 531 -~------------------~edi-------------------------a~lr~iPnl~V~---~P~d~~e~~~~l~~a~ 563 (719)
. .+++ .+++++ |+..+ -..|..++..+++.|.
T Consensus 192 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~-G~~~~g~vdG~d~~~l~~al~~A~ 270 (621)
T 2o1s_A 192 LNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEEL-GFNYIGPVDGHDVLGLITTLKNMR 270 (621)
T ss_dssp -----------------------------------------------CHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHC-CCeEeeeeCCCCHHHHHHHHHHHH
Confidence 0 0110 112221 23333 3358899999999998
Q ss_pred HcCCCcEEEEE
Q 005021 564 ANRKRPSILAL 574 (719)
Q Consensus 564 ~~~~~P~~irl 574 (719)
+ .++|++|..
T Consensus 271 ~-~~gP~lI~v 280 (621)
T 2o1s_A 271 D-LKGPQFLHI 280 (621)
T ss_dssp H-SCSEEEEEE
T ss_pred H-cCCCEEEEE
Confidence 6 589998875
No 98
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=34.09 E-value=47 Score=29.13 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=51.7
Q ss_pred CCEEEEEeC----HhHHHHHHHHHHHHhCCCc-EEEEecCChhhHHHHHHHhhhhhc-cCCCceEEEEccccccCchhhh
Q 005021 606 PDVILIGTG----SELEIAAKAAEELRKGGKA-VRVVSFVSWELFDEQSDAYKESVL-PAAVSARVSIEAGSTFGWEKIV 679 (719)
Q Consensus 606 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~-v~VId~~~l~pld~~~~~~~~sv~-~~~~~~vvvvE~~~~~G~~~~~ 679 (719)
.+|+|.+.+ +....|.+|.+.|++.|+. .+.+|+..- .+......... ....+. |.+......|+....
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d----~~~~~~l~~~tg~~tvP~-vfI~g~~IGG~d~l~ 94 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDD----PELRQGIKDYSNWPTIPQ-VYLNGEFVGGCDILL 94 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSC----HHHHHHHHHHHTCCSSCE-EEETTEEEESHHHHH
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCC----HHHHHHHHHHhCCCCcCe-EEECCEEEeChHHHH
Confidence 579999988 3677899999999999994 999998742 12111111111 123443 666665555654322
Q ss_pred cCCceEEeeCcCCCCCCHHHHHHHhCCC
Q 005021 680 GSKGKAIGIDRFGASAPAGKIYKEFGIT 707 (719)
Q Consensus 680 ~~~~~~ig~d~f~~~g~~~el~~~~gl~ 707 (719)
..-.+|.-.+++++.|+.
T Consensus 95 ----------~l~~~G~L~~~L~~~g~~ 112 (118)
T 2wem_A 95 ----------QMHQNGDLVEELKKLGIH 112 (118)
T ss_dssp ----------HHHHHSHHHHHHHHTTCC
T ss_pred ----------HHHHCCCHHHHHHHcCCh
Confidence 122345555666666653
No 99
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=32.66 E-value=1.9e+02 Score=34.36 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=44.3
Q ss_pred HHHHHHHHHhc-----------CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCCC---C
Q 005021 469 MGAICNGIALH-----------SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQ---P 531 (719)
Q Consensus 469 ~vg~AaGlA~~-----------G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq---~ 531 (719)
.++.|.|+|+. +...+.+|.+ -..+.. .+++.+..++..+++ +++|+...+.+. +|++-- .
T Consensus 197 g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si--~~~v~~~~~~ 274 (886)
T 2qtc_A 197 GPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRL--DGPVTGNGKI 274 (886)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCS--SSBSCTTSCH
T ss_pred cHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCccc--CCCccccccc
Confidence 45567777763 2112444433 344332 578888888888875 888886666643 566653 2
Q ss_pred hhhhh-HHcCCCCeEEEe
Q 005021 532 IEHLA-SFRAMPNILMLR 548 (719)
Q Consensus 532 ~edia-~lr~iPnl~V~~ 548 (719)
.+++. .+++ .|+.++.
T Consensus 275 ~~~l~~~~~~-~G~~~~~ 291 (886)
T 2qtc_A 275 INELEGIFEG-AGWNVIK 291 (886)
T ss_dssp HHHHHHHHHH-TTCEEEE
T ss_pred cHHHHHHHHh-CCCCEEE
Confidence 45544 3443 4666553
No 100
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=32.37 E-value=18 Score=32.98 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=27.1
Q ss_pred CCCEEEEEeCHhHH-HHHHHHHHHHhCCCcEEEEecC
Q 005021 605 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 605 g~dvtIva~G~~v~-~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
..|++||+||.... .--+..+.|++.||.+++.|-.
T Consensus 67 ~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 67 AIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp SCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 48999999998653 2234456788999999998744
No 101
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=30.76 E-value=19 Score=32.06 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=27.2
Q ss_pred CCCEEEEEeCHhHH--HHHHHHHHHHhCCCcEEEEec
Q 005021 605 KPDVILIGTGSELE--IAAKAAEELRKGGKAVRVVSF 639 (719)
Q Consensus 605 g~dvtIva~G~~v~--~al~Aa~~L~~~Gi~v~VId~ 639 (719)
+.|++||++|.... .--+..+.|++.||.+++.|-
T Consensus 61 ~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T 97 (122)
T 2ab1_A 61 GVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQT 97 (122)
T ss_dssp CCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECH
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCH
Confidence 58999999998654 334456778999999998864
No 102
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=30.29 E-value=17 Score=32.74 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=27.2
Q ss_pred CCCEEEEEeCHhHH-HHHHHHHHHHhCCCcEEEEecC
Q 005021 605 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 605 g~dvtIva~G~~v~-~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
..|++||+||.... .--+..+.|++.||.+++-|-.
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 48999999998652 2234556788999999998743
No 103
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=29.52 E-value=57 Score=28.87 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.5
Q ss_pred CCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecC
Q 005021 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 605 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
...++|+++|.+-. .+++.|.+.|+++.+||..
T Consensus 7 ~~~viIiG~G~~G~---~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLVGYGRVGS---LLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEECCSHHHH---HHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEECcCHHHH---HHHHHHHHCCCCEEEEECC
Confidence 35799999999654 4567788899999999965
No 104
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=28.08 E-value=1.2e+02 Score=25.75 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=31.2
Q ss_pred CCEEEEEeC----HhHHHHHHHHHHHHhCCCcEEEEecCC
Q 005021 606 PDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 641 (719)
Q Consensus 606 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~v~VId~~~ 641 (719)
.+|+|.+.+ +....|.+|.+.|.+.|+..+.+|+..
T Consensus 18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~ 57 (109)
T 3ipz_A 18 EKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILE 57 (109)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG
T ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCC
Confidence 579999888 367889999999999999999999864
No 105
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=27.68 E-value=1.3e+02 Score=35.74 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=58.6
Q ss_pred ccEEEe-hhhhHH--hHHHHHHHHhhhcCC---EEEEEecCCCccCCCCCCC-----CChhhhhHHcCCCCeEEEeeCCH
Q 005021 484 IPYCAT-FFVFTD--YMRAAIRISALCEAG---VIYVMTHDSIGLGEDGPTH-----QPIEHLASFRAMPNILMLRPADG 552 (719)
Q Consensus 484 ~Pv~~~-y~~F~~--ra~dqir~~a~~~~p---V~~v~~~~g~g~g~dG~TH-----q~~edia~lr~iPnl~V~~P~d~ 552 (719)
++||.. -..|.. -.++.+..+++.++| +++++-+.++|. .+++. ....|++-.-.+|.+.| -=-|.
T Consensus 279 ~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~--st~~~~~~s~~~~~~~a~a~G~p~~~V-dG~D~ 355 (868)
T 2yic_A 279 VPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF--TTAPTDSRSSEYCTDVAKMIGAPIFHV-NGDDP 355 (868)
T ss_dssp EEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBT--TBCHHHHCSSSSTTGGGGGGTCCEEEE-ETTCH
T ss_pred eEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCccc--ccCccccccccCHHHHHHhCCCcEEEE-eCCCH
Confidence 344432 466642 456777777888998 999997776653 23321 23456666667887765 34578
Q ss_pred HHHHHHHHHHHH---cCCCcEEEEE
Q 005021 553 NETAGAYKVAVA---NRKRPSILAL 574 (719)
Q Consensus 553 ~e~~~~l~~a~~---~~~~P~~irl 574 (719)
.++..+++.|++ ..++|++|-+
T Consensus 356 ~av~~a~~~A~~~ar~~~~PvlIe~ 380 (868)
T 2yic_A 356 EACAWVARLAVDFRQAFKKDVVIDM 380 (868)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 888888888874 2479999875
No 106
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=26.13 E-value=21 Score=32.24 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=27.2
Q ss_pred CCCEEEEEeCHhHH-HHHHHHHHHHhCCCcEEEEecC
Q 005021 605 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 605 g~dvtIva~G~~v~-~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
+.|++||+||.... .--+..+.|++.||.+++.|-.
T Consensus 64 ~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 100 (132)
T 2gm2_A 64 NPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTNA 100 (132)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECHH
T ss_pred CCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 47999999998653 2234456788899999998743
No 107
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=25.23 E-value=54 Score=28.77 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=26.0
Q ss_pred eCHhHHHHHHHHHHHHhCCCcEEEEecCChhh
Q 005021 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWEL 644 (719)
Q Consensus 613 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~p 644 (719)
||+.-..|..+++.|++.|++++++|+....+
T Consensus 9 tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~ 40 (138)
T 5nul_A 9 TGNTEKMAELIAKGIIESGKDVNTINVSDVNI 40 (138)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEEhhhCCH
Confidence 56677778888888888899999999987654
No 108
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=24.38 E-value=79 Score=28.27 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=26.1
Q ss_pred CCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecC
Q 005021 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 605 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
...++|+++|..-. ..++.|.+.|.++.|||-.
T Consensus 3 ~~~vlI~G~G~vG~---~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAI---NTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHH---HHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHH---HHHHHHHHCCCCEEEEECC
Confidence 35799999987554 4567788889999999975
No 109
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=24.21 E-value=1.1e+02 Score=26.25 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=29.9
Q ss_pred CCEEEEEeC----HhHHHHHHHHHHHHhCCCcEEEEecCC
Q 005021 606 PDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 641 (719)
Q Consensus 606 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~v~VId~~~ 641 (719)
..|+|.+-| +....|.+|.+.|.+.|+..+.+|+..
T Consensus 16 ~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~ 55 (111)
T 3zyw_A 16 APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS 55 (111)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG
T ss_pred CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC
Confidence 578888776 456789999999999999999999875
No 110
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=24.20 E-value=1.4e+02 Score=26.79 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=29.4
Q ss_pred CCEEEEEeC----HhHHHHHHHHHHHHhCCCcEEEEecCC
Q 005021 606 PDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 641 (719)
Q Consensus 606 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~v~VId~~~ 641 (719)
.+|+|.++| .....|.+|.+.|.+.|+..+.||+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~ 74 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ 74 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC
Confidence 357777776 566789999999999999999999875
No 111
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=23.94 E-value=78 Score=28.37 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=31.3
Q ss_pred CCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCCh
Q 005021 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSW 642 (719)
Q Consensus 605 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l 642 (719)
..++++||-|..+...+..++.|.+.|.++.++-.|+-
T Consensus 18 ~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~~ 55 (142)
T 3lyu_A 18 FGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFE 55 (142)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEG
T ss_pred CCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCCH
Confidence 36899999999999899889988888888888844543
No 112
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=23.68 E-value=2.8e+02 Score=26.07 Aligned_cols=35 Identities=29% Similarity=0.117 Sum_probs=25.0
Q ss_pred CCCEEEEEeC-HhHHHHHHHHHHHHhCCCcEE--EEec
Q 005021 605 KPDVILIGTG-SELEIAAKAAEELRKGGKAVR--VVSF 639 (719)
Q Consensus 605 g~dvtIva~G-~~v~~al~Aa~~L~~~Gi~v~--VId~ 639 (719)
.+.|.||.-| +....+.+|++.|++-|+..+ |++.
T Consensus 11 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~Sa 48 (170)
T 1xmp_A 11 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSA 48 (170)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 4677777655 456789999999998887644 4444
No 113
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=23.54 E-value=88 Score=27.35 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=26.1
Q ss_pred CCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecC
Q 005021 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 605 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
+..++|+++|.+ ....++.|.+.|.++.++|..
T Consensus 6 ~~~v~I~G~G~i---G~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAA---GVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHH---HHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHH---HHHHHHHHHHCCCeEEEEECC
Confidence 457999999984 445677888889999999854
No 114
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=23.36 E-value=31 Score=31.95 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=27.1
Q ss_pred CCCEEEEEeCHhHH-HHHHHHHHHHhCCCcEEEEec
Q 005021 605 KPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSF 639 (719)
Q Consensus 605 g~dvtIva~G~~v~-~al~Aa~~L~~~Gi~v~VId~ 639 (719)
+.+++||+||.... .--+..+.|++.||.+++-|-
T Consensus 88 ~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T 123 (150)
T 3cpk_A 88 APEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDT 123 (150)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECH
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCH
Confidence 47999999998653 233456778899999999873
No 115
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=22.56 E-value=60 Score=33.38 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=24.5
Q ss_pred CCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEec
Q 005021 606 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 639 (719)
Q Consensus 606 ~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~ 639 (719)
-||+||+.|.. -+-+|-.|.+.|++|.||+-
T Consensus 5 yDViIVGaGpa---Gl~~A~~La~~G~~V~v~Er 35 (397)
T 3oz2_A 5 YDVLVVGGGPG---GSTAARYAAKYGLKTLMIEK 35 (397)
T ss_dssp EEEEEECCSHH---HHHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHH---HHHHHHHHHHCCCcEEEEeC
Confidence 38999999973 34456678889999999974
No 116
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=22.22 E-value=75 Score=28.98 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=25.5
Q ss_pred CEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecC
Q 005021 607 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 607 dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
|++||+.|. ..+++|..|.+.|.++.||+-.
T Consensus 3 ~vvIIGgG~---~Gl~~A~~l~~~g~~v~lie~~ 33 (180)
T 2ywl_A 3 DVIVVGGGP---SGLSAALFLARAGLKVLVLDGG 33 (180)
T ss_dssp EEEEECCSH---HHHHHHHHHHHTTCCEEEEECS
T ss_pred eEEEECCCH---HHHHHHHHHHHCCCcEEEEeCC
Confidence 689999997 4566777788889999999854
No 117
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=21.39 E-value=85 Score=27.39 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=30.0
Q ss_pred CCEEEEEeC----HhHHHHHHHHHHHHhCCCc---EEEEecCC
Q 005021 606 PDVILIGTG----SELEIAAKAAEELRKGGKA---VRVVSFVS 641 (719)
Q Consensus 606 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~---v~VId~~~ 641 (719)
.+|+|.+.| +....|.+|.+.|.+.|+. .+.+|+..
T Consensus 16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~ 58 (121)
T 3gx8_A 16 APVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE 58 (121)
T ss_dssp CSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT
T ss_pred CCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC
Confidence 578888888 3677899999999989998 89999864
No 118
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=20.57 E-value=63 Score=27.38 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCEEEEEeC----HhHHHHHHHHHHHHhCCCcEEEEecCC
Q 005021 606 PDVILIGTG----SELEIAAKAAEELRKGGKAVRVVSFVS 641 (719)
Q Consensus 606 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~v~VId~~~ 641 (719)
.+|+|.+.| .....|.+|.+.|++.|+..+.||+..
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~ 54 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE 54 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC
Confidence 569999988 566789999999999999999999976
Done!