RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 005021
(719 letters)
>gnl|CDD|215424 PLN02790, PLN02790, transketolase.
Length = 654
Score = 1338 bits (3465), Expect = 0.0
Identities = 543/654 (83%), Positives = 585/654 (89%), Gaps = 29/654 (4%)
Query: 95 IRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCML 154
IRFLA+DAV KANSGHPGLPMGCAPMGH+LYDEVM+YNPKNPYWFNRDRFVLSAGHGCML
Sbjct: 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCML 60
Query: 155 QYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALA 214
QYALLHLAGYDSVQ +DLK FRQWGS+TPGHPENFETPGIEVTTGPLGQG+ANAVGLALA
Sbjct: 61 QYALLHLAGYDSVQMEDLKQFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALA 120
Query: 215 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274
EKHLAAR+NKPD++IVDHYTY ILGDGCQMEGI+NEA+SLAGH GLGKLI YDDNHISI
Sbjct: 121 EKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISI 180
Query: 275 DGDTEIAFTENVDKRFEGLGWHVIWV-----------------------------TTTIG 305
DGDTEIAFTE+VDKR+E LGWH IWV TTTIG
Sbjct: 181 DGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIG 240
Query: 306 FGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEW 365
+GSPNKANSYSVHG+ALG KEVDATRKNLGWPYEPFHVPEDVK HWS+H EGA LEAEW
Sbjct: 241 YGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEW 300
Query: 366 NAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKT 425
NAKFAEY+KKYPEEAAE KS+ SG+LP+GWEKALPT+TPE PA+ATRNLSQ CLNALAK
Sbjct: 301 NAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKV 360
Query: 426 LPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIP 485
LPGL+GGSADLASSNMTLLK FGDFQKDTPEERNVRFGVREHGMGAICNGIALHS GLIP
Sbjct: 361 LPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIP 420
Query: 486 YCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNIL 545
YCATFFVFTDYMRAA+R+SAL EAGVIYVMTHDSIGLGEDGPTHQPIEHLAS RAMPNIL
Sbjct: 421 YCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNIL 480
Query: 546 MLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNK 605
MLRPADGNETAGAYKVAV NRKRP++LALSRQK+P+L GTSI+GVEKG Y+ISDNSSGNK
Sbjct: 481 MLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNLPGTSIEGVEKGGYVISDNSSGNK 540
Query: 606 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARV 665
PD+ILIGTGSELEIAAKAA+ELRK GK VRVVS V WELF+EQSD YKESVLP++V+ARV
Sbjct: 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARV 600
Query: 666 SIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719
S+EAGSTFGWEK VGSKGK IG+DRFGASAPAG +YKEFG T E V+ AAK +
Sbjct: 601 SVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILYKEFGFTVENVVAAAKSLL 654
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 1038 bits (2687), Expect = 0.0
Identities = 374/658 (56%), Positives = 458/658 (69%), Gaps = 31/658 (4%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
+ N IRFL++DAV+KANSGHPG PMG A + ++L+ +++NP NP W NRDRFVLSA
Sbjct: 7 KLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSA 66
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GHG ML Y+LLHL GYD + +DLKNFRQ GSKTPGHPE TPG+E TTGPLGQG+ANA
Sbjct: 67 GHGSMLLYSLLHLTGYD-LSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANA 125
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+ALAEKHLAA +N+P +IVDHYTYV++GDGC MEG+++EA+SLAGHL LGKLI YD
Sbjct: 126 VGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYD 185
Query: 269 DNHISIDGDTEIAFTENVDKRFEGLGWHVIWV---------------------------- 300
N ISIDGDT ++FTE+V KRFE GW+VI V
Sbjct: 186 SNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIV 245
Query: 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGAT 360
T IG GSPNK ++ VHG+ LG +EV A +K LGW EPF VPE+V + GA
Sbjct: 246 KTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAK 305
Query: 361 LEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLN 420
EA WN FA Y+KKYPE AAEF+ +G+LPA W LP + + ATR S LN
Sbjct: 306 AEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALN 365
Query: 421 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 480
ALAK LP L+GGSADLA SN+T + GDF + R + FGVRE M AI NGIALH
Sbjct: 366 ALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHG 425
Query: 481 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540
G IPY TF VF+DY R A+R++AL VIYV THDSIG+GEDGPTHQP+E LAS RA
Sbjct: 426 -GFIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRA 484
Query: 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDN 600
+PN+ ++RPAD NETA A+K A+ + P+ L L+RQ LP L T ++GV KGAY++ D
Sbjct: 485 IPNLSVIRPADANETAAAWKYALERKDGPTALILTRQNLPVLERTDLEGVAKGAYVLKD- 543
Query: 601 SSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAA 660
S G PDVILI TGSE+E+A +AA+EL G VRVVS S+ELF++Q + Y+ESVLP A
Sbjct: 544 SGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGA 603
Query: 661 VSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
V+ARV+IEAGS GW K VG G IG+D FGASAP +++KEFG T E V+ AK +
Sbjct: 604 VTARVAIEAGSALGWYKYVGLDGAVIGMDSFGASAPGDELFKEFGFTVENVVAKAKSL 661
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 904 bits (2337), Expect = 0.0
Identities = 361/659 (54%), Positives = 448/659 (67%), Gaps = 36/659 (5%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
+K N IR LAVDA++KA SGHPG P+G AP+ +L+ + +++NP NP W NRDRFVLS
Sbjct: 1 KKLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSN 60
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GHG ML Y+LLHL GYD ED LK FRQ SKTPGHPE T G+E TTGPLGQG+ANA
Sbjct: 61 GHGSMLLYSLLHLTGYDLSIED-LKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANA 119
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+A+A+K LAA +NKP EIVDHYTYV +GDGC EGI+ E +SLAGHL LGKLI YD
Sbjct: 120 VGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYD 179
Query: 269 DNHISIDGDTEIAFTENVDKRFEGLGWHVIW----------------------------V 300
N ISIDG + +FTE+V KRFE GW V+ V
Sbjct: 180 SNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEV 239
Query: 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE-GA 359
TTTIGFGSPNKA ++ VHG+ LG ++V T+KNLGW Y PF VP++V H+ + V E GA
Sbjct: 240 TTTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGA 299
Query: 360 TLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 419
E EWN FA Y+KKYPE AAEF SG+LPA W+K LP + + A ATR SQ L
Sbjct: 300 KAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVL 359
Query: 420 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 479
NA+A LP LLGGSADLA SN+T K GD + P + +GVRE MGAI NGIALH
Sbjct: 360 NAIANVLPELLGGSADLAPSNLTKWKGSGDLH-ENPLGNYIHYGVREFAMGAIMNGIALH 418
Query: 480 SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 539
G PY TF +F DY R AIR++AL + VIYV THDSIG+GEDGPTHQPIE LAS R
Sbjct: 419 G-GFKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLR 477
Query: 540 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISD 599
A+PN+ + RP DGNETA A+K A+ ++ P+ L LSRQ LP L +S++ V KG Y++ D
Sbjct: 478 AIPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQLEESSLEKVLKGGYVLKD 537
Query: 600 NSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA 659
S PD+ILI TGSE+ +A +AA++L VRVVS S++LFD+Q + Y+ESVLPA
Sbjct: 538 --SKG-PDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPA 594
Query: 660 AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
V+ R+++EAG+ W K G G +G+D FG SAP K+++EFG T E V+ AK++
Sbjct: 595 NVT-RLAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDKLFEEFGFTVENVVAKAKKL 652
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional.
Length = 661
Score = 899 bits (2325), Expect = 0.0
Identities = 352/664 (53%), Positives = 446/664 (67%), Gaps = 39/664 (5%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR 143
D A+ EK N IR L+ D V+KANSGHPG PMG AP+ HIL+ EVM+YNPK+P W NRDR
Sbjct: 2 DGAIDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDR 61
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQ 203
FVLS GH L Y++LHL GYD + +DLKNFRQ GS+TPGHPE TPG+EVTTGPLGQ
Sbjct: 62 FVLSNGHASALLYSMLHLTGYD-LSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQ 120
Query: 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL 263
G+ANAVGLA+AEKHLAA++N+P + I D+Y YVI GDGC EG++ EA SLAGHLGL KL
Sbjct: 121 GIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKL 180
Query: 264 IAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHV-------------------------- 297
I YDDN I+IDG+T+++FTE+V+K++E GWHV
Sbjct: 181 IVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGK 240
Query: 298 ---IWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSR 353
I V TTIG+GS +KA + VHG+ LG +++ ++ G P + FHV E+V++ + +
Sbjct: 241 PKLIIVKTTIGYGS-SKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQ 299
Query: 354 HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRN 413
HV + W +FA+Y +P+EA + G+LP GWEK LP YT A ATR
Sbjct: 300 HVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRK 359
Query: 414 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAIC 473
S+ LN L + LP L+GGSADL SN+T K DF K +PE R +RFGVREH M AI
Sbjct: 360 ASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIM 419
Query: 474 NGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 533
NGIA H G IP+ ATF F Y A+R++AL VIYV THDSIGLGEDGPTHQP+E
Sbjct: 420 NGIAAHG-GFIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVE 478
Query: 534 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG 593
LA RA PN+L++RPADG ET+GAY +A+AN K P+IL LSRQ P L G+SI+GV KG
Sbjct: 479 TLALLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPLPGSSIEGVLKG 538
Query: 594 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYK 653
AYI+ D + N P +IL+ +GSE+ + +AA+ L K VRVVS WELFD+QS+ Y+
Sbjct: 539 AYIVVDFT--NSPQLILVASGSEVSLCVEAAKALSKELN-VRVVSMPCWELFDQQSEEYQ 595
Query: 654 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 713
+SVLP+ +S+EA +FGWEK +GI FGASAPA +YK FG T E V+
Sbjct: 596 QSVLPSGGVPVLSVEAYVSFGWEKYS---HVHVGISGFGASAPANALYKHFGFTVENVVE 652
Query: 714 AAKE 717
A+
Sbjct: 653 KARA 656
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed.
Length = 586
Score = 878 bits (2272), Expect = 0.0
Identities = 343/665 (51%), Positives = 412/665 (61%), Gaps = 107/665 (16%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
+ D L++ N IR L++DAV+KANSGHPG+PMG A + ++L+ +R++PKNP W N
Sbjct: 1 SMMDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPN 60
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
RDRFVLSAGHG ML Y+LLHLAGYD + DDLKNFRQ GSKTPGHPE TPG+E TTGP
Sbjct: 61 RDRFVLSAGHGSMLLYSLLHLAGYD-LSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGP 119
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL 260
LGQG+ANAVG+ALAEK+LAA +N+P +IVDHYTYV+ GDG MEGI++EA SLAGHL L
Sbjct: 120 LGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKL 179
Query: 261 GKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-------------------- 300
G LI YDDN ISIDG TE FTE+V KRFE GWHVI V
Sbjct: 180 GNLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTK 239
Query: 301 ------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH 354
T IG G+PNK + H
Sbjct: 240 PTLIIAKTIIGKGAPNKEGT---------------------------------------H 260
Query: 355 VAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNL 414
GA L AE E A K GW+ R
Sbjct: 261 KVHGAPLGAE--------------EIAAAKKE------LGWD--------------YRKA 286
Query: 415 SQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICN 474
S LNALAK LP L+GGSADLA SN T +K DF + R + +GVRE M AI N
Sbjct: 287 SGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIAN 346
Query: 475 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534
G+ALH G IP+ TF VF+DY R AIR++AL + VIYV THDSIG+GEDGPTHQP+E
Sbjct: 347 GLALHG-GFIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQ 405
Query: 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS-IDGVEKG 593
LAS RA+PN+ ++RPAD NETA A+K A+ + PS L L+RQ LP L T+ +GV KG
Sbjct: 406 LASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVLERTAQEEGVAKG 465
Query: 594 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYK 653
Y++ D PDVILI TGSE+ +A +AA+EL G VRVVS S ELFDEQ AYK
Sbjct: 466 GYVLRD-----DPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYK 520
Query: 654 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 713
ESVLPAAV+ARV++EAG GW K VG GK +GID FGASAPA +++KEFG T E ++
Sbjct: 521 ESVLPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDTFGASAPADELFKEFGFTVENIVA 580
Query: 714 AAKEV 718
AAKE+
Sbjct: 581 AAKEL 585
>gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed.
Length = 663
Score = 802 bits (2074), Expect = 0.0
Identities = 344/660 (52%), Positives = 428/660 (64%), Gaps = 40/660 (6%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KANSGHPG PMG A + +L+ + +++NP NP W++RDRF+LS GH
Sbjct: 9 NAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHAS 68
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE TPG+E TTGPLGQG+ANAVGLA
Sbjct: 69 MLLYSLLHLTGYD-LPIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLA 127
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
+AE+ LAA++N+P +EIVDHYTYV +GDGC MEGI++E SLAG LGLGKLI FYD N I
Sbjct: 128 IAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGI 187
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVI-------------------WVT---------TTI 304
SIDG+TE FT++ KRFE WHVI V T I
Sbjct: 188 SIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIICRTII 247
Query: 305 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 364
GFGSPNKA HG+ LG +EV TR+ LGW + PF +P+++ W +G E
Sbjct: 248 GFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWD-AREKGEKAEQA 306
Query: 365 WNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 420
WN KFA Y+K YPE AAEF SG LP WEK Y E +PA+ ATR SQ L
Sbjct: 307 WNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLE 366
Query: 421 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 480
A LP LLGGSADLA SN+T+ ++D P + +GVRE GM AI NGIA H
Sbjct: 367 AYGPLLPELLGGSADLAPSNLTIWSGSKSLKED-PAGNYIHYGVREFGMTAIANGIAHHG 425
Query: 481 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540
G +PY ATF +F +Y R A R++AL +A I V THDSIGLGEDGPTHQP+E LAS R
Sbjct: 426 -GFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRL 484
Query: 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIIS 598
PN RP D E A A+K+A+ P+ L LSRQ L T + + +G YI+
Sbjct: 485 TPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQERTPEQVKNIARGGYILK 544
Query: 599 DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 658
D SG KPD+ILI TGSE+EI +AAE+L G+ VRVVS S ++FD Q +AY+ESVLP
Sbjct: 545 D--SGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLP 602
Query: 659 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
+ V+ARV++EAG W K VG KG IG+ FG SAPA K++ FG T E ++ AK++
Sbjct: 603 SNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGESAPADKLFPFFGFTVENIVAKAKKL 662
>gnl|CDD|183724 PRK12754, PRK12754, transketolase; Reviewed.
Length = 663
Score = 652 bits (1682), Expect = 0.0
Identities = 323/658 (49%), Positives = 413/658 (62%), Gaps = 40/658 (6%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + + +NP+NP W +RDRFVLS GHG
Sbjct: 9 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGS 68
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
ML Y+LLHL GYD E+ LKNFRQ SKTPGHPE T G+E TTGPLGQG+ANAVG+A
Sbjct: 69 MLIYSLLHLTGYDLPMEE-LKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMA 127
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN I
Sbjct: 128 IAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 187
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVI----------------------------WVTTTI 304
SIDG E FT++ RFE GWHVI T I
Sbjct: 188 SIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTII 247
Query: 305 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 364
GFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W A G E+
Sbjct: 248 GFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEA-GQAKESA 306
Query: 365 WNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 420
WN KFA Y K YP+EAAEF G++PA ++ + + +PA+ A+R SQ +
Sbjct: 307 WNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIE 366
Query: 421 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 480
A LP LGGSADLA SN+TL +D + +GVRE GM AI NGIALH
Sbjct: 367 AFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNY-IHYGVREFGMTAIANGIALHG 425
Query: 481 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540
G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +AS R
Sbjct: 426 -GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRV 484
Query: 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIIS 598
PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G Y++
Sbjct: 485 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLK 544
Query: 599 DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 658
D +P++I I TGSE+E+A A E+L G RVVS S + FD+Q AY+ESVLP
Sbjct: 545 D--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLP 602
Query: 659 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
AVSARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+ AK
Sbjct: 603 KAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAK 660
>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate
binding domain. This family includes transketolase
enzymes EC:2.2.1.1. and also partially matches to
2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4.
Both these enzymes utilise thiamine pyrophosphate as a
cofactor, suggesting there may be common aspects in
their mechanism of catalysis.
Length = 333
Score = 480 bits (1237), Expect = e-166
Identities = 195/331 (58%), Positives = 234/331 (70%), Gaps = 29/331 (8%)
Query: 90 KSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAG 149
++ N IR LA+DAVEKA SGHPG PMG AP+ +L+ +R+NP +P W NRDRFVLS G
Sbjct: 4 RAANAIRALAMDAVEKAGSGHPGAPMGMAPIAEVLFKRTLRHNPNDPKWPNRDRFVLSNG 63
Query: 150 HGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAV 209
H ML Y+LLHL GYD + +DLK+FRQ GSKTPGHPE T G+EVTTGPLGQG+ANAV
Sbjct: 64 HASMLLYSLLHLTGYD-LSMEDLKSFRQLGSKTPGHPEFGHTAGVEVTTGPLGQGIANAV 122
Query: 210 GLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDD 269
G+A+AE +LAA YN+P +IVDHYTYV LGDGC MEG+++EASSLAGHL LG LIAFYDD
Sbjct: 123 GMAIAEANLAATYNRPGFDIVDHYTYVFLGDGCLMEGVSSEASSLAGHLKLGNLIAFYDD 182
Query: 270 NHISIDGDTEIAFTENVDKRFEGLGWHVIWV----------------------------T 301
N ISIDG+TEI+FTE+ KRFE GWHVI V
Sbjct: 183 NRISIDGETEISFTEDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEAKAEKDKPTLIICR 242
Query: 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATL 361
T IG+GSPNK ++ VHG+ LGA EV A ++ LGW Y+PF +P++V W VAEGA
Sbjct: 243 TVIGYGSPNKQGTHDVHGAPLGADEVAALKEKLGWDYKPFEIPQEVYDAWKEKVAEGAKA 302
Query: 362 EAEWNAKFAEYEKKYPEEAAEFKSISSGQLP 392
EAEWN FA Y+K YPEEAAEF +G+LP
Sbjct: 303 EAEWNELFAAYKKAYPEEAAEFVRRLNGELP 333
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase
(TK) subfamily, TPP-binding module; TK catalyzes the
transfer of a two-carbon unit from ketose phosphates to
aldose phosphates. In heterotrophic organisms, TK
provides a link between glycolysis and the pentose
phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. In addition, the enzyme plays a central
role in the Calvin cycle in plants. Typically, TKs are
homodimers. They require TPP and divalent cations, such
as magnesium ions, for activity.
Length = 255
Score = 371 bits (955), Expect = e-125
Identities = 122/267 (45%), Positives = 152/267 (56%), Gaps = 40/267 (14%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++D V+KA SGHPG + A + +LY +V++Y+P +P W NRDRFVLS GH
Sbjct: 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHAS 60
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
YA+L LAGY E+DLK FRQ GS+ PGHPE TPG+EVTTG LGQG++ AVG+A
Sbjct: 61 PALYAVLALAGYLP--EEDLKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMA 118
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
LAEK L D+ YV+LGDG EG EA+S AGH L LIA D N I
Sbjct: 119 LAEKLL----------GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRI 168
Query: 273 SIDGDT-EIAFTENVDKRFEGLGWHVIWV---------------------------TTTI 304
IDG T +I FTE++ K+FE GW+VI V T
Sbjct: 169 QIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIK 228
Query: 305 GFGSPNKANSYSVHGSALGAKEVDATR 331
G G P N+ HG LG +EV+ +
Sbjct: 229 GKGVPFMENTAKWHGKPLGEEEVELAK 255
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins. Thiamine
pyrophosphate (TPP) family, pyrimidine (PYR) binding
domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and the beta subunits of the E1
component of the human pyruvate dehydrogenase complex
(E1- PDHc), subfamily. The PYR domain is found in many
key metabolic enzymes which use TPP (also known as
thiamine diphosphate) as a cofactor. TPP binds in the
cleft formed by a PYR domain and a PP domain. The PYR
domain, binds the aminopyrimidine ring of TPP, the PP
domain binds the diphosphate residue. A polar
interaction between the conserved glutamate of the PYR
domain and the N1' of the TPP aminopyrimidine ring is
shared by most TPP-dependent enzymes, and participates
in the activation of TPP. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Like many TPP-dependent enzymes DXS and TK
are homodimers having a PYR and a PP domain on the same
subunit. TK has two active sites per dimer which lie
between PYR and PP domains of different subunits. For
DXS each active site is located at the interface of a
PYR and a PP domain from the same subunit. E1-PDHc is an
alpha2beta2 dimer-of-heterodimers having two active
sites but having the PYR and PP domains arranged on
separate subunits, the PYR domains on the beta subunits,
the PP domains on the alpha subunits. DXS is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis, it catalyzes a
transketolase-type condensation of pyruvate with
D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
TK catalyzes the transfer of a two-carbon unit from
ketose phosphates to aldose phosphates. In heterotrophic
organisms, TK provides a link between glycolysis and the
pentose phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. TK also plays a central role in the Calvin
cycle in plants. PDHc catalyzes the irreversible
oxidative decarboxylation of pyruvate to produce
acetyl-CoA in the bridging step between glycolysis and
the citric acid cycle. This subfamily includes the beta
subunits of the E1 component of the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). ADC participates in the
breakdown of acetoin. BCADC catalyzes the oxidative
decarboxylation of 4-methyl-2-oxopentanoate,
3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate
during the breakdown of branched chain amino acids.
Length = 156
Score = 202 bits (516), Expect = 2e-61
Identities = 66/165 (40%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Query: 413 NLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAI 472
L LAK P ++ SADL S F K P+ R + G+ E M I
Sbjct: 1 KAFGEALLELAKKDPRIVALSADLGGSTGL-----DKFAKKFPD-RFIDVGIAEQNMVGI 54
Query: 473 CNGIALHSPGLIPYCATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQP 531
G+ALH GL P+ +TF F IR AL V +V TH I +GEDGPTHQ
Sbjct: 55 AAGLALH--GLKPFVSTFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG 112
Query: 532 IEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR 576
IE +A RA+PN+ +LRPAD NETA A + A P + L R
Sbjct: 113 IEDIALLRAIPNMTVLRPADANETAAALEAA-LEYDGPVYIRLPR 156
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain.
This family includes transketolase enzymes, pyruvate
dehydrogenases, and branched chain alpha-keto acid
decarboxylases.
Length = 172
Score = 193 bits (493), Expect = 6e-58
Identities = 73/173 (42%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 410 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGM 469
ATR S L LAK P ++GG AD+A T+ K Q + R + G+ E M
Sbjct: 4 ATRKASGEALAELAKRDPRVVGGGADVAGGTFTVTKGLLHPQ---GDGRVIDTGIAEQAM 60
Query: 470 GAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPT 528
I NG+ALH L P ATF F + AIR +AL + V +V+T D IG+GEDGPT
Sbjct: 61 VGIANGMALHGL-LPPVEATFGDFANRADDAIRHYAALGKLPVPFVVTRDPIGVGEDGPT 119
Query: 529 HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPH 581
HQ E LA RA+PN+ ++RP+D ET G + A+ P +L L RQ L H
Sbjct: 120 HQSQEDLAFLRAIPNLKVVRPSDAAETKGLLRAAIE-DDGPVVLRLPRQLLRH 171
>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate
transport and metabolism].
Length = 243
Score = 179 bits (455), Expect = 1e-51
Identities = 88/213 (41%), Positives = 117/213 (54%), Gaps = 13/213 (6%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
E+ IR V + A SGH G + + +LY ++M +P +P W RDRF+LS
Sbjct: 11 ERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSK 70
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GH YA L GY E++L+ FR+ GS+ PGHPE +TPG+EV+TG LGQG++ A
Sbjct: 71 GHAAPALYATLAEKGY--FPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVA 128
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+AL K L + YVILGDG EG EA+ A H L LIA D
Sbjct: 129 VGMALGAK-LKGS---------PYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVD 178
Query: 269 DNHISIDGDTE-IAFTENVDKRFEGLGWHVIWV 300
N + +DG+TE I E + ++E GW VI V
Sbjct: 179 RNKLQLDGETEEIMPKEPLADKWEAFGWEVIEV 211
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 136
Score = 134 bits (339), Expect = 9e-37
Identities = 45/120 (37%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 462 FGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDS-I 520
G+ E M G+ALH GL P FF F D + IR SA V V HD
Sbjct: 20 TGIAEQAMVGFAAGLALH--GLRPVVEIFFTFFDRAKDQIR-SAGASGNVPVVFRHDGGG 76
Query: 521 GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLP 580
G+GEDGPTH IE A RA+P + ++ P+D E G + A+ P ++ L R+ L
Sbjct: 77 GVGEDGPTHHSIEDEALLRAIPGLKVVAPSDPAEAKGLLRAAI-RDDGPVVIRLERKSLY 135
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate
transport and metabolism].
Length = 312
Score = 121 bits (306), Expect = 2e-30
Identities = 95/322 (29%), Positives = 144/322 (44%), Gaps = 47/322 (14%)
Query: 419 LNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIAL 478
L L + ++ ADL+SS T G F K+ P+ R G+ E M G+AL
Sbjct: 17 LAELGRKNSDIVVLDADLSSSTKT-----GYFAKEFPD-RFFNVGIAEQDMVGTAAGLAL 70
Query: 479 HSPGLIPYCATFFVFTDYMRAA---IRISALCEAG--VIYVMTHDSIGLGEDGPTHQPIE 533
G P+ +TF F R A IR S + V V TH + GEDG +HQ +E
Sbjct: 71 A--GKKPFVSTFAAF--LSRRAWEQIRNS-IAYNNLNVKIVATHAGVTYGEDGSSHQALE 125
Query: 534 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG 593
+A R +PN+ ++ PAD ET +A+ K P + L R K+P + E G
Sbjct: 126 DIAIMRGLPNMTVIAPADAVETRAILD-QIADYKGPVYMRLGRGKVPVVVDEGGYTFEIG 184
Query: 594 -AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAY 652
A ++ D S D+ +I TG + A +AAE L+K G + V++ + + DEQ
Sbjct: 185 KANVLRDGS-----DLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQ---- 235
Query: 653 KESVLPAAVSAR--VSIEAGSTFGWEKIVGS------------KGKAIGI-DRFGASAPA 697
++L AA V+ E S G +GS + IG+ D FG S A
Sbjct: 236 --AILKAARETGRIVTAEEHSIIGG---LGSAVAEVLSENGPTPMRRIGVPDTFGRSGKA 290
Query: 698 GKIYKEFGITAEAVITAAKEVC 719
++ +G+ E++ E+
Sbjct: 291 DELLDYYGLDPESIAARVLELL 312
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain. The
C-terminal domain of transketolase has been proposed as
a regulatory molecule binding site.
Length = 124
Score = 55.7 bits (135), Expect = 2e-09
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 606 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVS--FVS---WELFDE-QSDAYKESVLPA 659
DV ++ GS + A +AAEEL K G + V+ V + E + V+
Sbjct: 10 DDVTIVAYGSMVHEALEAAEELAKEGISAEVIDLRTVKPLDEDTILESVKKTGRLVVVEE 69
Query: 660 AVSARVSIEAG-STFGWEKIVGSKGKAI----GIDRFGASAPAGKIYKEFGITAEAV 711
AV R + + E+ + G D PA G+TAE +
Sbjct: 70 AV-KRGGFGSEVAAALAEEGFDYLDAPVLRVGGPDTPIPHGPAL-ELAYLGLTAEKI 124
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 580
Score = 58.9 bits (144), Expect = 5e-09
Identities = 70/270 (25%), Positives = 103/270 (38%), Gaps = 57/270 (21%)
Query: 475 GIALHSPGLIPYCA---TFF------VFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GE 524
G+A GL P A TF V D AL V + + D GL G
Sbjct: 339 GLATE--GLKPVVAIYSTFLQRAYDQVIHDV--------ALQNLPVTFAI--DRAGLVGA 386
Query: 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR-----QKL 579
DGPTHQ L+ R +PN++++ P+D NE A+A P + R +L
Sbjct: 387 DGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPIAIRYPRGNGVGVEL 446
Query: 580 PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS- 638
P L I E ++ + DV ++ G+ L A KAAE L + VV
Sbjct: 447 PELEPLPIGKGE----VLREGE-----DVAILAFGTMLAEALKAAERL----ASATVVDA 493
Query: 639 -FVS---WELFDEQSDAYK------ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGI 688
FV EL E + + E + + V +E + G + V +G+
Sbjct: 494 RFVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAV-LEFLADHGLDVPV----LNLGL 548
Query: 689 -DRFGASAPAGKIYKEFGITAEAVITAAKE 717
D F ++ E G+ AE + E
Sbjct: 549 PDEFIDHGSREELLAELGLDAEGIARRILE 578
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme
metabolism / Lipid metabolism].
Length = 627
Score = 58.4 bits (142), Expect = 8e-09
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 22/208 (10%)
Query: 523 GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPH- 581
G DGPTHQ + L+ R +PN++++ P D E A+A P + R
Sbjct: 422 GADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGV 481
Query: 582 LAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS--F 639
+ ++ +E G + G V ++ G+ L A K AE+L G +V VV F
Sbjct: 482 ILTPELEPLEIGKGEL--LKEG--EKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRF 537
Query: 640 V---SWELFDEQSDAYK------ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGI-D 689
V L E + ++ E+V+ + V E + G V +G+ D
Sbjct: 538 VKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVL-EFLAAHGILVPV----LNLGLPD 592
Query: 690 RFGASAPAGKIYKEFGITAEAVITAAKE 717
F ++ E G+ AE + E
Sbjct: 593 EFIDHGSPEELLAELGLDAEGIARRILE 620
Score = 32.9 bits (76), Expect = 0.61
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 206 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 265
+ A+G+A A D +V ++GDG G+A EA + AG LI
Sbjct: 122 SAALGMAKA-----RDLKGEDRNVV-----AVIGDGALTGGMAFEALNNAGADLKSNLIV 171
Query: 266 FYDDNHISI 274
+DN +SI
Sbjct: 172 ILNDNEMSI 180
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase. DXP
synthase is a thiamine diphosphate-dependent enzyme
related to transketolase and the pyruvate dehydrogenase
E1-beta subunit. By an acyloin condensation of pyruvate
with glyceraldehyde 3-phosphate, it produces
1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine
diphosphate (TPP), pyridoxal phosphate, and the
isoprenoid building block isopentenyl diphosphate (IPP)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other, Biosynthesis of cofactors, prosthetic
groups, and carriers, Pyridoxine, Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 617
Score = 55.2 bits (133), Expect = 1e-07
Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 11/180 (6%)
Query: 518 DSIGL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR 576
D G+ G DG THQ ++ R +PN++++ P+D NE P +
Sbjct: 410 DRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAV---- 465
Query: 577 QKLPHLAGTSIDGVEKGAYIISDNSSGNKP--DVILIGTGSELEIAAKAAEELRKGGKAV 634
+ P ++ + + S + ++++G G+ + A + AE L + G
Sbjct: 466 -RYPRGNAVGVELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEA 524
Query: 635 RVVS--FVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 692
VV FV L +E S +I G+ + + + K + + R G
Sbjct: 525 TVVDARFVK-PLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQNKLVPVKRLG 583
Score = 33.2 bits (76), Expect = 0.59
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 35/190 (18%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMG---HILYDEVMRYNPKNPYWFNRDRF 144
+EK + +R +++V A+ GH +G + H +++ PK D+F
Sbjct: 18 LEKLCDELRRYLLESVS-ASGGHLASGLGTVELTVALHYVFN-----TPK-------DQF 64
Query: 145 VLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQG 204
+ GH Y L G + + RQ G P+ E+ + G
Sbjct: 65 IWDVGHQA---YPHKLLTG----RREKFSTLRQKKG-LHGFPKRSESEYDVFSAGHSSTS 116
Query: 205 MANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLI 264
++ +G+A+A + + D T ++GDG G+A EA + AG L +I
Sbjct: 117 ISAGLGIAVAA----------EKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKT-DMI 165
Query: 265 AFYDDNHISI 274
+DN +SI
Sbjct: 166 VILNDNEMSI 175
>gnl|CDD|238975 cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate (TPP) family, E1
of E. coli PDC-like subfamily, TPP-binding module;
composed of proteins similar to the E1 component of the
Escherichia coli pyruvate dehydrogenase multienzyme
complex (PDC). PDC catalyzes the oxidative
decarboxylation of pyruvate and the subsequent
acetylation of coenzyme A to acetyl-CoA. The E1
component of PDC catalyzes the first step of the
multistep process, using TPP and a divalent cation as
cofactors. E. coli PDC is a homodimeric enzyme.
Length = 386
Score = 51.5 bits (124), Expect = 8e-07
Identities = 56/219 (25%), Positives = 81/219 (36%), Gaps = 24/219 (10%)
Query: 95 IRFLAVDAVEKANSGHPGL---PMGCAPMGHI---LYDEVMRYNPKNPYWFNRDRFVLSA 148
IR+ A+ V +AN G+ A + ++ R + D V
Sbjct: 11 IRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFR--ARGEG-GGGDL-VYFQ 66
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKT--PGHPENFETPGI-EVTTGPLGQGM 205
GH YA L G + E+ L NFRQ +P + P E T +G G
Sbjct: 67 GHASPGIYARAFLEG--RLTEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGP 124
Query: 206 ANAVGLALAEKHLAAR-YNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLI 264
A+ A ++L R ++ V + LGDG E + A LA L LI
Sbjct: 125 IQAIYQARFNRYLEDRGLKDTSDQKV----WAFLGDGEMDEPESLGAIGLAAREKLDNLI 180
Query: 265 AFYDDNHISIDG---DTEIAFTENVDKRFEGLGWHVIWV 300
+ N +DG E ++ F G GW+VI V
Sbjct: 181 FVVNCNLQRLDGPVRGNGKIIQE-LEGIFRGAGWNVIKV 218
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 641
Score = 49.7 bits (119), Expect = 4e-06
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 32/261 (12%)
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRIS---ALCEAGVIYVMTHDSIGL-GEDGPTHQPI 532
L + GL P+CA + F R ++ AL V +V+ D GL G DG TH
Sbjct: 379 GLAAAGLKPFCAVYSTFLQ--RGYDQLLHDVALQNLPVRFVL--DRAGLVGADGATHAGA 434
Query: 533 EHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT---SIDG 589
LA +PN+ ++ P D E + A A+ P + R + + +I G
Sbjct: 435 FDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEGVGVEIPAEGTILG 494
Query: 590 VEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS--FVSWEL--- 644
+ KG PDV ++ G+ L AA+ L G +V V FV L
Sbjct: 495 IGKGRVP------REGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFV-KPLDEA 547
Query: 645 FDEQSDAYKESVLP------AAVSARVSIEAGSTFGWEKIVGSKGKAIGI-DRFGASAPA 697
+ + V+ A V T + G K + +G+ DRF A
Sbjct: 548 LTDLLVRHHIVVIVEEQGAMGGFGAHVLHHLADTGLLDG--GLKLRTLGLPDRFIDHASR 605
Query: 698 GKIYKEFGITAEAVITAAKEV 718
++Y E G+TA + A
Sbjct: 606 EEMYAEAGLTAPDIAAAVTGA 626
Score = 29.7 bits (67), Expect = 5.9
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETP----GIEV 196
+D+ V GH C Y L G + D + RQ G + G + E+ G
Sbjct: 69 KDKLVWDVGHQC---YPHKILTG----RRDRFRTLRQKGGLS-GFTKRSESEYDPFGAAH 120
Query: 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG 256
++ + + A AL + PD ++V ++GDG G+A EA + AG
Sbjct: 121 SSTSISAALGFAKARALGQ---------PDGDVV-----AVIGDGSLTAGMAYEALNNAG 166
Query: 257 HLGLGKLIAFYDDNHISID 275
+LI +DN +SI
Sbjct: 167 AAD-RRLIVILNDNEMSIA 184
>gnl|CDD|225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1)
component [Energy production and conversion].
Length = 887
Score = 48.9 bits (117), Expect = 8e-06
Identities = 60/230 (26%), Positives = 87/230 (37%), Gaps = 24/230 (10%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPY 137
D L + + IR+ A V +A+ GH A + + ++ R K+
Sbjct: 74 DLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFR--AKSEK 131
Query: 138 WFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETPG-I 194
D V GH YA L G + E+ L NFRQ G +P P
Sbjct: 132 -DGGDL-VFFQGHASPGIYARAFLEGRLT--EEQLDNFRQEVDGKGLSSYPHPKLMPDFW 187
Query: 195 EVTTGPLGQGMANAVGLALAEKHLAAR-YNKPDNEIVDHYTYVILGDGCQMEGIANEASS 253
+ T +G G A+ A K+L AR ++ V + LGDG E + A +
Sbjct: 188 QFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKV----WAFLGDGEMDEPESRGAIT 243
Query: 254 LAGHLGLGKLIAFYDDNHISIDG---DTEIAFTENVDKRFEGLGWHVIWV 300
A L LI + N +DG E ++ F G GW+VI V
Sbjct: 244 EAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQE-LEGIFRGAGWNVIKV 292
Score = 40.0 bits (94), Expect = 0.005
Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 21/151 (13%)
Query: 588 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSW-ELF 645
+G+ KG Y + K V L+G+G+ L A +AAE L K G + S S+ EL
Sbjct: 707 EGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELA 766
Query: 646 DEQSDA---------------YKESVLPAAVSARVSIEAGSTFGWEKI---VGSKGKAIG 687
+ A Y VL A V++ E+I V + + +G
Sbjct: 767 RDGQAAERWNLLHPTETPRVPYVAQVLNADGPV-VAVTDYMKLFAEQIRAVVPQRYRVLG 825
Query: 688 IDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
D FG S + + F + A V+ AA
Sbjct: 826 TDGFGRSDSRENLRRFFEVDAYYVVVAALSA 856
>gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and
metabolism].
Length = 793
Score = 48.2 bits (115), Expect = 2e-05
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 509 AGVIYVMTHDSIGLGEDGPTHQP---IEHLASFRAMPNIL-MLRPADGNETAGAYKVAVA 564
+ Y++T +G +HQ I+H+A+ +I+ + P D N Y +
Sbjct: 522 PSLNYLLTSHVWRQDHNGFSHQDPGFIDHVAN--KKSDIVRVYFPPDANTLLAVYDHCLR 579
Query: 565 NRKRPSILALSRQKLPHLAGTSID----GVEKGAYIISDNSSGN--KPDVILIGTGSE-L 617
+R + +++ S+Q P +++ GA I + +SG+ +PDV++ G
Sbjct: 580 SRNKINVIVASKQ--PRPQWLTMEQAEKHCTDGA-GIWEWASGDDGEPDVVMACAGDVPT 636
Query: 618 EIAAKAAEELRKGGK--AVRVVSFV 640
AA+ LR+ G VRVV+ V
Sbjct: 637 IEVLAAAQILREEGPELRVRVVNVV 661
Score = 33.1 bits (76), Expect = 0.67
Identities = 44/179 (24%), Positives = 66/179 (36%), Gaps = 44/179 (24%)
Query: 144 FVLSAGHGCMLQYALLHLAG-----YDSVQEDD------LKNFRQWGSKTPGHPENFETP 192
+V+ GHG A +L G Y + +D+ K F G H ETP
Sbjct: 89 YVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPGG-IGSHV-APETP 146
Query: 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS 252
G G LG +++A G A + PD IV ++GDG G A+
Sbjct: 147 GSIHEGGELGYALSHAYGAAF---------DNPD-LIV----ACVVGDGEAETG--PLAT 190
Query: 253 SLAGHLGLGKLIAFYDD---------NHISIDGDTEIAFTENVD--KRFEGLGWHVIWV 300
S + K + D N I+ T +A + + FEG G+ ++V
Sbjct: 191 SWHSN----KFLNPARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFV 245
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 43.4 bits (103), Expect = 7e-05
Identities = 27/125 (21%), Positives = 38/125 (30%), Gaps = 29/125 (23%)
Query: 191 TPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANE 250
G +G G+ A+G ALA D I GDG M E
Sbjct: 38 RFLTSTGFGAMGYGLPAAIGAALAAP--------------DRPVVCIAGDGGFMMTG-QE 82
Query: 251 ASSLAGHLGLGKLIAFYDDN--HISIDGDTEIAFTE--------NVD--KRFEGLGWHVI 298
++ A GL +I +N + +I E + N D E G +
Sbjct: 83 LAT-AVRYGL-PVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGV 140
Query: 299 WVTTT 303
V
Sbjct: 141 RVEDP 145
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 677
Score = 41.4 bits (97), Expect = 0.002
Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 22/196 (11%)
Query: 450 FQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALC 507
F + P R G+ E G+A GL P+CA + F+ Y + + L
Sbjct: 392 FARRFPT-RCFDVGIAEQHAVTFAAGLACE--GLKPFCAIYSSFLQRGYDQVVHDVD-LQ 447
Query: 508 EAGVIYVMTHDSIGL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR 566
+ V + M D GL G DGPTH + +PN++++ P+D E A A
Sbjct: 448 KLPVRFAM--DRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAID 505
Query: 567 KRPSILALSR------QKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIA 620
RPS R Q P+ G I+ V KG ++ V L+G G+ ++
Sbjct: 506 DRPSCFRYPRGNGIGVQLPPNNKGIPIE-VGKGRILLEGE------RVALLGYGTAVQSC 558
Query: 621 AKAAEELRKGGKAVRV 636
AA L + G + V
Sbjct: 559 LAAASLLERHGLSATV 574
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 641
Score = 40.9 bits (95), Expect = 0.002
Identities = 147/679 (21%), Positives = 247/679 (36%), Gaps = 174/679 (25%)
Query: 24 TQSSEHHRLALSTLSLPSF------------SGLKSTSSSTLRTPTSRRR---------- 61
TQ ++ ++ALS + PS+ S + ST S +R T +
Sbjct: 5 TQINKFSQMALSVFAFPSYINRNPSLKYLKPSSMSSTKYSKVRATTFSEKGEYYSNRPPT 64
Query: 62 --LSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAP 119
L T + ++ +++ L+ +D +R + V K GH G +G
Sbjct: 65 PLLDTINHPMHMKNLSIKELKVLSDE---------LRSDVIFNVSKT-GGHLGSNLGVVE 114
Query: 120 MGHILYDEVMRYNPKNPYWFN--RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQ 177
+ L+ Y FN D+ + GH Y L G + +K RQ
Sbjct: 115 LTVALH-----------YIFNTPHDKILWDVGHQ---SYPHKILTG----RRGKMKTIRQ 156
Query: 178 WGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI 237
+ G+ + E+ TG ++ +G+A+ D + +++ +
Sbjct: 157 TNGLS-GYTKRRESEHDSFGTGHSSTTLSAGLGMAVGR----------DLKGMNNSVVSV 205
Query: 238 LGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI-----DGDTE------------- 279
+GDG G A EA + AG+L ++ D+ +S+ DG T+
Sbjct: 206 IGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQ 265
Query: 280 ---IAFTENVDKRFEGLGWHVIWVTTTIGFGSPNKANSYSVHGSALGAKEVD------AT 330
E FE LG+H +V G N + S+ + K + T
Sbjct: 266 SNCGMIRETSSTLFEELGFH--YVGPVDGH---NIDDLVSILETLKSTKTIGPVLIHVVT 320
Query: 331 RKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 390
K G+PY AE A + K+ K PE +FK+IS Q
Sbjct: 321 EKGRGYPY-----------------AERA------DDKYHGVLKFDPETGKQFKNISKTQ 357
Query: 391 -LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGD 449
+ + +AL + AEA +++ + +GG T+L +F
Sbjct: 358 SYTSCFVEALI-----AEAEADKDIV---------AIHAAMGGG--------TMLNLF-- 393
Query: 450 FQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAA----IRISA 505
+ P R G+ E G+A GL P+C +++ +M+ A +
Sbjct: 394 -ESRFPT-RCFDVGIAEQHAVTFAAGLACE--GLKPFCT---IYSSFMQRAYDQVVHDVD 446
Query: 506 LCEAGVIYVMTHDSIGL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA 564
L + V + + D GL G DGPTH + +PN++++ P+D E A A
Sbjct: 447 LQKLPVRFAI--DRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAA 504
Query: 565 NRKRPSILALSRQKLPHLAGTSIDGVEKG-------AYIISDNSSGNKPDVILIGTGSEL 617
RPS R + G S+ KG I+ D V L+G GS +
Sbjct: 505 IDDRPSCFRYHRG---NGIGVSLPPGNKGVPLQIGRGRILRDGER-----VALLGYGSAV 556
Query: 618 EIAAKAAEELRKGGKAVRV 636
+ +AA L + G + V
Sbjct: 557 QRCLEAASMLSERGLKITV 575
>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS
subfamily, TPP-binding module;
1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis. Terpeniods are plant
natural products with important pharmaceutical activity.
DXS catalyzes a transketolase-type condensation of
pyruvate with D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
The formation of DXP leads to the formation of the
terpene precursor IPP (isopentyl diphosphate) and to the
formation of thiamine (vitamin B1) and pyridoxal
(vitamin B6).
Length = 195
Score = 37.5 bits (88), Expect = 0.009
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 32/167 (19%)
Query: 137 YWFN--RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGI 194
Y F+ +D+ + GH Y L G + D RQ+G + G + E+
Sbjct: 19 YVFDSPKDKIIWDVGHQA---YPHKILTG----RRDQFHTLRQYGGLS-GFTKRSESEYD 70
Query: 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSL 254
TG ++ A+G+A+A +++ ++GDG G+A EA +
Sbjct: 71 AFGTGHSSTSISAALGMAVA-----RDLKGKKRKVI-----AVIGDGALTGGMAFEALNN 120
Query: 255 AGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKR---FEGLGWHVI 298
AG+L +I +DN +SI NV FE LG+ I
Sbjct: 121 AGYLK-SNMIVILNDNEMSIS--------PNVGTPGNLFEELGFRYI 158
>gnl|CDD|233117 TIGR00759, aceE, pyruvate dehydrogenase E1 component, homodimeric
type. Most members of this family are pyruvate
dehydrogenase complex, E1 component. Note: this family
was classified as subfamily rather than equivalog
because it includes a counterexample from Pseudomonas
putida, MdeB, that is active as an E1 component of an
alpha-ketoglutarate dehydrogenase complex rather than a
pyruvate dehydrogase complex. The second pyruvate
dehydrogenase complex E1 protein from Alcaligenes
eutrophus, PdhE, complements an aceE mutant of E. coli
but is not part of a pyruvate dehydrogenase complex
operon, is more similar to the Pseudomonas putida MdeB
than to E. coli AceE, and may have also have a different
primary specificity.
Length = 885
Score = 38.6 bits (90), Expect = 0.013
Identities = 62/232 (26%), Positives = 90/232 (38%), Gaps = 28/232 (12%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHI--------LYDEVMRYNPKN 135
D L + + IR+ A+ V +AN L +G GHI LY+ + +
Sbjct: 71 DLELERRIRSIIRWNAIAMVLRAN--KKDLGLG----GHISTYASAATLYEVGFNHFFRG 124
Query: 136 PYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQ--WGSKTPGHPENFETPG 193
V GH YA L G + E+ L NFRQ G +P + P
Sbjct: 125 HSEGGGGDLVFFQGHAAPGIYARAFLEG--RLTEEQLDNFRQEVQGDGLSSYPHPWLMPD 182
Query: 194 I-EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS 252
+ T +G G NA+ A K+L R K D + LGDG E + A
Sbjct: 183 FWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTG---DQKVWAFLGDGEMDEPESKGAI 239
Query: 253 SLAGHLGLGKLIAFYDDNHISIDG----DTEIAFTENVDKRFEGLGWHVIWV 300
+ A L L + N +DG + +I + ++ F G GW+VI V
Sbjct: 240 TFAAREKLDNLTFVINCNLQRLDGPVRGNGKI--IQELESLFRGAGWNVIKV 289
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 36.9 bits (86), Expect = 0.036
Identities = 59/286 (20%), Positives = 106/286 (37%), Gaps = 29/286 (10%)
Query: 447 FGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYM-RAAIRISA 505
+F+K P+ + V G+ E A +GIA + G P FV + ++ RA ++S
Sbjct: 311 LKEFRKKYPD-QYVDVGIAEQESVAFASGIA--ANGARP---VIFVNSTFLQRAYDQLSH 364
Query: 506 -LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA 564
L VM + + TH I + +PN++ L P E + A+
Sbjct: 365 DLAINNNPAVMIVFGGSISGNDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALT 424
Query: 565 NRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAA 624
+ P + + + T Y ++ V ++ G E+ K A
Sbjct: 425 QHEHPVAIRVPEHGVES-GPTVDTDYSTLKYEVTKAGE----KVAILALGDFYELGEKVA 479
Query: 625 EELR-KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST---FGWEKIV- 679
++L+ + G +++ DE+ L V++E G FG EKI
Sbjct: 480 KKLKEELGIDATLINPKFITGLDEELLEK----LKEDHELVVTLEDGILDGGFG-EKIAR 534
Query: 680 --GSKGKAI---GIDR-FGASAPAGKIYKEFGITAEAVITAAKEVC 719
G+ + G + F P ++YK +T E ++ V
Sbjct: 535 YYGNSDMKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine).
Length = 293
Score = 35.9 bits (84), Expect = 0.051
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGH 257
G +G + A G ALA K Y D GDG EG +EA + A
Sbjct: 103 NGIVGGQVPLAAGAALALK-----YRGEDR-----VAVCFFGDGATNEGDFHEALNFAAL 152
Query: 258 LGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWV 300
L +I ++N +I T ++ R G I V
Sbjct: 153 WKL-PVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRV 195
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 701
Score = 36.2 bits (83), Expect = 0.068
Identities = 49/202 (24%), Positives = 76/202 (37%), Gaps = 35/202 (17%)
Query: 450 FQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVF-----------TDYMR 498
FQ+ P+ R G+ E A+ L S GL P+C F D R
Sbjct: 417 FQERFPD-RFFNVGMAEQH--AVTFSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDRQR 473
Query: 499 AAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGA 558
A+R + AG++ G DGP +A ++PN++ + PAD +E
Sbjct: 474 KAVRF-VITSAGLV----------GSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNM 522
Query: 559 YKVAVANRKRPSILALSRQKL---PHLAGTSID-GVEKGAYIISDNSSGNKPDVILIGTG 614
A RP R + +L T + + +G ++ DV L+G G
Sbjct: 523 VATAAYVTDRPVCFRFPRGSIVNMNYLVPTGLPIEIGRGRVLVEGQ------DVALLGYG 576
Query: 615 SELEIAAKAAEELRKGGKAVRV 636
+ ++ A L K G V V
Sbjct: 577 AMVQNCLHAHSLLSKLGLNVTV 598
>gnl|CDD|235379 PRK05261, PRK05261, putative phosphoketolase; Provisional.
Length = 785
Score = 35.2 bits (82), Expect = 0.13
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 549 PADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDG----VEKGAYIIS--DNSS 602
P D N + +R +++ +Q P S+D KG I N
Sbjct: 553 PPDANTLLAVADHCLRSRNYINVIVAGKQ--PRPQWLSMDEARKHCTKGLGIWDWASNDD 610
Query: 603 GNKPDVILIGTGSE--LEIAAKAAEELRKGGKA--VRVVSFV 640
G +PDV+L G LE A AA+ LR+ +RVV+ V
Sbjct: 611 GEEPDVVLACAGDVPTLETLA-AADLLREHFPDLKIRVVNVV 651
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 33.4 bits (77), Expect = 0.40
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG 256
G +G + A G ALA K Y + + GDG +G +EA + A
Sbjct: 136 GIVGTQIPLAAGAALALK-----YRGTKDGV----AVAFFGDGATNQGDFHEALNFAA 184
>gnl|CDD|199897 cd10911, LabA, LabA_like proteins. A well conserved group of
bacterial and archaeal proteins with no defined
function. LabA, a member from Synechococcus elongatus
PCC 7942, has been shown to play a role in
cyanobacterial circadian timing. It is required for
negative feedback regulation of the
autokinase/autophosphatase KaiC, a central component of
the circadian clock system. In particular, LabA seems
necessary for KaiC-dependent repression of gene
expression. LabA_like domains exhibit some similarity to
the NYN domain, a distant relative of the PIN-domain
nucleases.
Length = 155
Score = 31.7 bits (73), Expect = 0.65
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 605 KPDVILIGTG-SELEIAAKAAEELRKGGKAVRVVSF---VSWELFDEQSDAY 652
DV+++ +G + +A L+ GK V VVSF S EL +D +
Sbjct: 104 NLDVVVLVSGDGDFAPLVEA---LQARGKRVEVVSFRENTSDELRR-AADRF 151
>gnl|CDD|146952 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). Rpb2 is the
second largest subunit of the RNA polymerase. This
domain comprised of the structural domains anchor and
clamp. The clamp region (C-terminal) contains a
zinc-binding motif. The clamp region is named due to its
interaction with the clamp domain found in Rpb1. The
domain also contains a region termed "switch 4". The
switches within the polymerase are thought to signal
different stages of transcription.
Length = 78
Score = 29.7 bits (68), Expect = 0.91
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 469 MGAICNGIALHSPGLIPYCATFFVFTDYMRA 499
AIC G + PG IP +F + +R+
Sbjct: 40 YAAICKGKTIIEPGDIPE--SFKLLLQELRS 68
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 32.4 bits (74), Expect = 0.95
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%)
Query: 572 LALSRQK--LPHLAGTSIDGVEKGAYIISDNSSGNK----PDVILIGTGSELEIAAKAAE 625
LA+ QK + G + GV G + + + G V++IG G+ AA+ A
Sbjct: 284 LAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTA- 342
Query: 626 ELRKGGKAVRVVSFVSWELFD----EQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGS 681
LR G ++V ++ + E E +A E V ++A VSIE G ++
Sbjct: 343 -LRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSE--GGLELTAI 399
Query: 682 KGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 714
K + D G P EF + A+ VI+A
Sbjct: 400 KMQQGEPDESGRRRPVPVEGSEFTLQADTVISA 432
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 31.0 bits (71), Expect = 1.4
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 14/45 (31%)
Query: 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241
G LG G+ AVG ALA PD ++V I+GDG
Sbjct: 47 RGGGLGWGLPAAVGAALA---------NPDRKVV-----AIIGDG 77
>gnl|CDD|177775 PLN00180, PLN00180, NDF6 (NDH-dependent flow 6); Provisional.
Length = 180
Score = 30.2 bits (68), Expect = 2.2
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 5 SSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRRRLST 64
+ FT ++ + +H S H L S SG + S S +++
Sbjct: 3 TPFTKTKPHIPSSYAHSTKQDSGPCHGLLAQCSSGRFLSGWVNEKRSKNSKRGSLCKVNA 62
Query: 65 SQASLPIRAAAVETLETSTDAALVEKSV 92
LP+ A VE +E D + KS+
Sbjct: 63 LPHDLPLMAVMVEHVEGQRD-YITHKSI 89
>gnl|CDD|147071 pfam04725, PsbR, Photosystem II 10 kDa polypeptide PsbR. This
protein is associated with the oxygen-evolving complex
of photosystem II. Its function in photosynthesis is not
known. The C-terminal hydrophobic region functions as a
thylakoid transfer signal but is not removed.
Length = 99
Score = 29.0 bits (65), Expect = 2.3
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 400 PTYTPE--SPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTL 443
P YTP+ SP+ T L A TL GLLGG A L + L
Sbjct: 52 PIYTPDEWSPSGDVYVGGTTGLAIWAVTLAGLLGGGALLVYNTSAL 97
>gnl|CDD|218085 pfam04430, DUF498, Protein of unknown function (DUF498/DUF598).
This is a large family of uncharacterized proteins found
in all domains of life. The structure shows a novel fold
with three beta sheets. A dimeric form is found in the
crystal structure. It was suggested that the cleft in
between the two monomers might bing nucleic acid.
Length = 109
Score = 29.1 bits (66), Expect = 2.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 604 NKPDVILIGTGSELEIAAKAAEE-LRKGGKAVRVVS 638
P+V++IGTG+ L E LRK G V V+
Sbjct: 52 PDPEVLIIGTGARLRFLPPELREALRKLGIGVEVMD 87
>gnl|CDD|221377 pfam12012, DUF3504, Domain of unknown function (DUF3504). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 156 to 173 amino acids in length.
Length = 172
Score = 30.1 bits (68), Expect = 2.5
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Query: 5 SSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRRRLST 64
S L L T + G +H RL+ ++ + + LR + RR
Sbjct: 22 SPIVLLNTLWFFNTKYFGLRTLEQHRRLSFGNVTRQTRPNPDTEKKVFLRYYSPSRR-PR 80
Query: 65 SQASLPIRAAAVETLETSTDAALVEKSVNTIR 96
S + E E S +R
Sbjct: 81 SADDVVAVGKRKHKEEDEPVLEQRENSDGPLR 112
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 30.7 bits (70), Expect = 2.9
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 18/63 (28%)
Query: 185 HPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244
+F T +G LG G+ AVG+ALA +P ++ ++GDG M
Sbjct: 397 RQGSFYTM----ASGGLGYGLPAAVGVALA---------QPGRRVI-----GLIGDGSAM 438
Query: 245 EGI 247
I
Sbjct: 439 YSI 441
>gnl|CDD|237267 PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1;
Provisional.
Length = 896
Score = 31.1 bits (71), Expect = 3.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 580 PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRK-GGKAVRVVS 638
P L + +G+ KG Y ++ ++ P V L+G+G+ L AA L G V S
Sbjct: 709 PALPEGAEEGILKGMYRLA--AAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWS 766
Query: 639 FVSW-EL 644
S+ EL
Sbjct: 767 VTSFTEL 773
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase;
Provisional.
Length = 355
Score = 30.7 bits (70), Expect = 3.1
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 607 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS 649
DV ++G GS++ +A KAAEEL K G + V+ S +D ++
Sbjct: 235 DVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRET 277
>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component. Nup88 can be divided
into two structural domains; the N-terminal two-thirds
of the protein has no obvious structural motifs but is
the region for binding to Nup98, one of the components
of the nuclear pore. the C-terminal end is a predicted
coiled-coil domain. Nup88 is overexpressed in tumour
cells.
Length = 717
Score = 30.6 bits (69), Expect = 3.2
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 26 SSEHHRLALS------TLSLPSFSGLKS-----TSSSTLRTPTSRRRLSTSQASLPIRAA 74
S E +ALS L LP G S RT RL TS SL +R A
Sbjct: 93 SPEQSHVALSGPRGVMILELPRRWGKDSEFEGGKKQINCRTFPLAERLFTSSTSLELRQA 152
Query: 75 AVETLETSTDAALVEKSVNTIRF 97
E S L+ S NTIR
Sbjct: 153 RWYPSEVSEPHLLLLTSDNTIRV 175
>gnl|CDD|238152 cd00248, Mth938-like, Mth938-like domain. The members of this
family include: Mth938, 2P1, Xcr35, Rpa2829, and several
uncharacterized sequences. Mth938 is a hypothetical
protein encoded by the Methanobacterium
thermoautotrophicum (Mth) genome. This protein
crystallizes as a dimer, although it is monomeric in
solution, with one disulfide bond in each monomer. 2P1
is a partially characterized nuclear protein which is
homologous to E3-3 from rat and known to be alternately
spliced. Xcr35 and Rpa2829 are hypothetical proteins of
unknown function from the Xanthomonas campestris and
Rhodopseudomonas palustris genomes, respectively, for
which the crystal structures have been determined.
Length = 109
Score = 28.8 bits (65), Expect = 3.3
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 557 GAYKVAVAN-RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGS 615
G +A R +L L +P GTS+ ++ A + + ++PD++LIGTG+
Sbjct: 6 GPGGFRIAGQVYRGPLLVLPDGVVP-WDGTSLSDLDPEA--LLPLLAEDRPDILLIGTGA 62
Query: 616 ELEIAAKAA-EELRKGGKAVRVVS 638
E+ +A LR G V V+S
Sbjct: 63 EIAFLPRALRAALRAAGIGVEVMS 86
>gnl|CDD|130230 TIGR01162, purE, phosphoribosylaminoimidazole carboxylase, PurE
protein. Phosphoribosylaminoimidazole carboxylase is a
fusion protein in plants and fungi, but consists of two
non-interacting proteins in bacteria, PurK and PurE.
This model represents PurK, an N5-CAIR mutase [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 156
Score = 29.1 bits (66), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 608 VILIGTGSELEIAAKAAEELRKGGKA--VRVVS 638
I++G+ S+L KAA+ L + G +RVVS
Sbjct: 2 GIIMGSDSDLPTMKKAADILEEFGIPYELRVVS 34
>gnl|CDD|234323 TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha
subunit. This family of proteins contains a C-terminal
thiamine diphosphate (TPP) binding domain typical of
flavodoxin/ferredoxin oxidoreductases (pfam01855) as
well as an N-terminal domain similar to the gamma
subunit of the same group of oxidoreductases
(pfam01558). The genes represented by this model are
always found in association with a neighboring gene for
a beta subunit (TIGR02177) which also occurs in a
4-subunit (alpha/beta/gamma/ferredoxin) version of the
system. This alpha/gamma plus beta structure was used to
define the set of sequences to include in this model.
This pair of genes is not consistantly observed in
proximity to any electron acceptor genes, but is found
next to putative ferredoxins or ferredoxin-domain
proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum
USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM
15236, Rhodopseudomonas palustris BisB5, Os,
Sphingomonas wittichii RW1 and Streptomyces
clavuligerus. Other potential acceptors are also
sporadically observed in close proximity including
ferritin-like proteins, reberythrin, peroxiredoxin and a
variety of other flavin and iron-sulfur
cluster-containing proteins. The phylogenetic
distribution of this family encompasses archaea, a
number of deeply-branching bacterial clades and only a
small number of firmicutes and proteobacteria. The
enzyme from Sulfolobus has been characterized with
respect to its substrate specificity which is described
as wide, encompassing various 2-oxoacids such as
2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme
from Hydrogenobacter thermophilus has been shown to have
a high specificity towards 2-oxoglutarate and is one of
the key enzymes in the reverse TCA cycle in this
organism. Furthermore, considering its binding of
coenzyme A, it can be reasonably inferred that the
product of the reaction is succinyl-CoA. The genes for
this enzyme in Prevotella intermedia 17, Persephonella
marina EX-H1 and Picrophilus torridus DSM 9790 are in
close proximity to a variety of TCA cycle genes.
Persephonella marina and P. torridus are believed to
encode complete TCA cycles, and none of these contains
the lipoate-based 2-oxoglutarate dehydrogenase
(E1/E2/E3) system. That system is presumed to be
replaced by this one. In fact, the lipoate system is
absent in most organisms possessing a member of this
family, providing additional circumstantial evidence
that many of these enzymes are capable of acting as
2-oxoglutarate dehydrogenases and.
Length = 562
Score = 30.2 bits (69), Expect = 4.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 639
DV++IG GS +A E LR G V ++
Sbjct: 463 DADVLIIGWGSTYGAIREAVERLRAEGIKVALLHL 497
>gnl|CDD|227114 COG4773, FhuE, Outer membrane receptor for ferric coprogen and
ferric-rhodotorulic acid [Inorganic ion transport and
metabolism].
Length = 719
Score = 30.1 bits (68), Expect = 5.0
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHL--AARYNKPD 226
D L +F ++ P +T G + TT G A LA L RY
Sbjct: 411 PDALGDFTEFNGVIPQPDWGTQTSGQKDTTDQKGLYAATRFRLA-DPLSLILGGRY---T 466
Query: 227 NEIVDHYTY 235
N VD YT
Sbjct: 467 NWRVDTYTS 475
>gnl|CDD|214768 smart00664, DoH, Possible catecholamine-binding domain present in a
variety of eukaryotic proteins. A predominantly
beta-sheet domain present as a regulatory N-terminal
domain in dopamine beta-hydroxylase, mono-oxygenase X
and SDR2. Its function remains unknown at present
(Ponting, Human Molecular Genetics, in press).
Length = 148
Score = 28.9 bits (65), Expect = 5.3
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 263 LIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVTTTIGFGSPNKANSYSVHGSAL 322
L A Y++ ++ ++ + DK HV+W G SPN Y H +L
Sbjct: 81 LSATYENGVLTCRFRRKLGSNDPDDKSLLDGTVHVLW---AKGPLSPNGGLGY--HDFSL 135
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 29.9 bits (67), Expect = 5.6
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSAR 664
DV+++G G I +AAE K GK V ++ E +D +L V+
Sbjct: 136 PKDVVVVGAG---PIGLEAAEAAAKRGKKVTLI---------EAADRLGGQLLDPEVAEE 183
Query: 665 VSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
+ E +G E ++G+K + I A+ VI E
Sbjct: 184 L-AELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236
>gnl|CDD|223035 PHA03294, PHA03294, envelope glycoprotein H; Provisional.
Length = 835
Score = 30.1 bits (68), Expect = 5.7
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 48 TSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAV 100
+ LRTP +S A P+ L DAALV + + F+ +
Sbjct: 210 DAELLLRTPKRSVYVSPFAAVWPVDYWHTGELVFGCDAALVRARIG-VGFMGL 261
>gnl|CDD|181999 PRK09622, porA, pyruvate flavodoxin oxidoreductase subunit alpha;
Reviewed.
Length = 407
Score = 29.7 bits (67), Expect = 6.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 607 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 639
+V ++ G+ E A AA+E+RK G V +
Sbjct: 269 EVAIVALGTTYESAIVAAKEMRKEGIKAGVATI 301
>gnl|CDD|218736 pfam05763, DUF835, Protein of unknown function (DUF835). The
members of this archaebacterial protein family are
around 250-300 amino acid residues in length. The
function of these proteins is not known.
Length = 136
Score = 28.3 bits (64), Expect = 6.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 280 IAFTENVDKRFEGLGWHVIWVT 301
+A T +++ L VIW+T
Sbjct: 26 LAITRENPEKWRELYIPVIWIT 47
>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic
binding fold superfamily. Type 1 periplasmic binding
fold superfamily. This model and hierarchy represent the
ligand binding domains of the LacI family of
transcriptional regulators, periplasmic binding proteins
of the ABC-type transport systems, the family C
G-protein couples receptors (GPCRs), membrane bound
guanylyl cyclases including the family of natriuretic
peptide receptors (NPRs), and the N-terminal
leucine/isoleucine/valine- binding protein (LIVBP)-like
domains of the ionotropic glutamate receptors (iGluRs).
In LacI-like transcriptional regulator and the bacterial
periplasmic binding proteins the ligands are
monosaccharides including lactose, ribose, fructose,
xylose, arabinose, galactose/glucose, and other sugars,
with a few exceptions. Periplasmic sugar binding
proteins are one of the components of ABC transporters
and are involved in the active transport of
water-soluble ligands. The LacI family of proteins
consists of transcriptional regulators related to the
lac repressor. In this case, the sugar binding domain
binds a sugar which changes the DNA binding activity of
the repressor domain. The periplasmic binding proteins
are the primary receptors for chemotaxis and transport
of many sugar based solutes. The core structures of
periplasmic binding proteins are classified into two
types, and they differ in number and order of beta
strands: type 1 has six beta strands, while type 2 has
five beta strands per sub-domain. These two structural
folds are thought to be distantly related via a common
ancestor. Notably, while the N-terminal LIVBP-like
domain of iGluRs belongs to the type 1
periplasmic-binding fold protein superfamily, the
glutamate-binding domain of the iGluR is structurally
similar to the type 2 periplasmic-binding fold.
Length = 269
Score = 29.1 bits (65), Expect = 7.3
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 601 SSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 643
+ KPD I A KAA E + ++ F
Sbjct: 178 KAAPKPDAIFACNDEMAAGALKAAREAGLTPGDISIIGFDGSP 220
>gnl|CDD|182093 PRK09819, PRK09819, alpha-mannosidase; Provisional.
Length = 875
Score = 29.2 bits (66), Expect = 9.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 689 DRFGASAPAGKIYKEFGIT 707
D FG S +IY FGIT
Sbjct: 125 DSFGQSGQMPQIYNGFGIT 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.390
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,886,787
Number of extensions: 3684612
Number of successful extensions: 3507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3434
Number of HSP's successfully gapped: 86
Length of query: 719
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 615
Effective length of database: 6,324,786
Effective search space: 3889743390
Effective search space used: 3889743390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (27.8 bits)