RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 005021
(719 letters)
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 1248 bits (3232), Expect = 0.0
Identities = 554/674 (82%), Positives = 595/674 (88%), Gaps = 30/674 (4%)
Query: 74 AAVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYN 132
AVETL+ + L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYN
Sbjct: 1 GAVETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYN 60
Query: 133 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETP 192
PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLK FRQWGS+TPGHPENFETP
Sbjct: 61 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETP 120
Query: 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS 252
G+EVTTGPLGQG+ANAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA
Sbjct: 121 GVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEAC 180
Query: 253 SLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------ 300
SLAGH GLGKLIAFYDDNHISIDGDTEIAFTE+V RFE LGWH IWV
Sbjct: 181 SLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRA 240
Query: 301 -----------------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHV 343
TTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F V
Sbjct: 241 AIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFV 300
Query: 344 PEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYT 403
PEDVK HWSRH EGA LEA+WNAKFAEYEKKY ++AA KSI +G+LP GW ALP YT
Sbjct: 301 PEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYT 360
Query: 404 PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFG 463
PESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDFQKDT EERNVRFG
Sbjct: 361 PESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFG 420
Query: 464 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLG 523
VREHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLG
Sbjct: 421 VREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLG 480
Query: 524 EDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA 583
EDGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPSILALSRQKLPHL
Sbjct: 481 EDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLP 540
Query: 584 GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 643
GTSI+GVEKG Y ISDNS+GNKPD+I++GTGSELEIAAKAA+ELRK GK VRVVSFVSWE
Sbjct: 541 GTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWE 600
Query: 644 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 703
LFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE
Sbjct: 601 LFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKE 660
Query: 704 FGITAEAVITAAKE 717
+GIT E++I AAK
Sbjct: 661 YGITVESIIAAAKS 674
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 1201 bits (3109), Expect = 0.0
Identities = 345/692 (49%), Positives = 453/692 (65%), Gaps = 37/692 (5%)
Query: 60 RRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAP 119
+ + + + + ++ + S+NTIR L++DA+EKANSGHPG+PMG AP
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAP 61
Query: 120 MGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWG 179
M + L+ + M++NP NP WFNRDRFVLSAGHG ML Y+LLHL+GYD V DDLKNFRQWG
Sbjct: 62 MAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYD-VTMDDLKNFRQWG 120
Query: 180 SKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILG 239
SKTPGHPE T G++ TTGPLGQG+A AVG+A+AE+HLAA+YN+ IVDHYTY I G
Sbjct: 121 SKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICG 180
Query: 240 DGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW 299
DG MEG++ EASSLA HL LG+L+ YD N IS+DGD +F+E+V+ R++ GW VI
Sbjct: 181 DGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIR 240
Query: 300 V----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATR 331
V TTIGFGSPNK+ + HGS LG +E T+
Sbjct: 241 VEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTK 300
Query: 332 KNLGWPYE-PFHVPEDVKKHWSRHVAE-GATLEAEWNAKFAEYEKKYPEEAAEFKSISSG 389
+ W E FHV E+V +++ + V + G T +AEWN EY + YPE A E ++ +G
Sbjct: 301 EAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNG 360
Query: 390 QLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGD 449
LP GWE+ LPTY S A ATRN S +NA+A+++P GGSADLA SN T + D
Sbjct: 361 LLPEGWEQNLPTYELGSKA-ATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKD 419
Query: 450 FQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEA 509
F +D +N+ +GVRE MGA NGIALH GL Y TFFVF+DY+R AIR++AL +
Sbjct: 420 FTRDDYSGKNIWYGVREFAMGAAMNGIALHG-GLKTYGGTFFVFSDYLRPAIRLAALMQL 478
Query: 510 GVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRP 569
V YV THDSI +GEDGPTH+PIE LA+ RAMPN+ ++RPADGNE+ A+++A+ + +P
Sbjct: 479 PVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNESVAAWRLALESTNKP 538
Query: 570 SILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEE 626
+ L L+RQ LP L G + + V KGAY++S S DVIL+ TGSE+ +A +A +
Sbjct: 539 TALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSA-SKKETADVILLATGSEVSLAVEAQKA 597
Query: 627 LRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAI 686
L G VVS S + F+ Q+ YKESVLP AV+ R +IE G+TFGW + VG +G +
Sbjct: 598 LAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDVL 657
Query: 687 GIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
GID FGASAP KI +E+G T E V+ KE+
Sbjct: 658 GIDTFGASAPGEKIMEEYGFTVENVVRKVKEM 689
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 1189 bits (3078), Expect = 0.0
Identities = 295/692 (42%), Positives = 396/692 (57%), Gaps = 48/692 (6%)
Query: 73 AAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYN 132
+A + +V+TIR LA DAV+K +GHPG M AP+ + L+ MR++
Sbjct: 8 SALTRPRHPDYWTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHD 67
Query: 133 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETP 192
P + +W RDRFVLSAGH + Y L+L G+ ++ D+++ R WGSKTPGHPE TP
Sbjct: 68 PSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFG-LELSDIESLRTWGSKTPGHPEFRHTP 126
Query: 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYN---KPDNEIVDHYTYVILGDGCQMEGIAN 249
G+E+TTGPLGQG+A+AVG+A+A ++ ++ +P DHY YVI DG EG+ +
Sbjct: 127 GVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTS 186
Query: 250 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------- 300
EASSLA LG LI FYD N ISI+ DT IA E+ R+ GWHV V
Sbjct: 187 EASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENVVGI 246
Query: 301 -------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-P 340
T IG+ +PN ++ HG+ALG EV A +K +G+ +
Sbjct: 247 EEAIANAQAVTDRPSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKT 306
Query: 341 FHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALP 400
F V EDV H VA G W +F + ++ PE A + + +LP GW+ LP
Sbjct: 307 FQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGWDADLP 366
Query: 401 TYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE--- 457
+ P S A ATR S L+AL LP L GGSADLA SN T +K F +
Sbjct: 367 HWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEY 426
Query: 458 ------RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 511
R + FGVREH MGAI +GI LH Y TF F+DYMR A+R++AL +
Sbjct: 427 TAHWYGRTLHFGVREHAMGAILSGIVLHG-PTRAYGGTFLQFSDYMRPAVRLAALMDIDT 485
Query: 512 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA--NRKRP 569
IYV THDSIGLGEDGPTHQPIEHL++ RA+P + ++RPAD NETA A++ +A N P
Sbjct: 486 IYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGP 545
Query: 570 SILALSRQKLPHLAGTSIDGVEKGAYIISDNS---SGNKPDVILIGTGSELEIAAKAAEE 626
L L+RQ +P L GT +GV +G Y++SD G +PDVILI TGSE+++A A
Sbjct: 546 VGLILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTL 605
Query: 627 LRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAI 686
L RVVS E F+ Q Y+++VLP VSARV++EAG W ++VG G+ +
Sbjct: 606 LADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEIV 665
Query: 687 GIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
I+ +G SA +++E+G TAEAV AA+
Sbjct: 666 SIEHYGESADHKTLFREYGFTAEAVAAAAERA 697
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 1186 bits (3070), Expect = 0.0
Identities = 318/664 (47%), Positives = 415/664 (62%), Gaps = 40/664 (6%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
++ N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS
Sbjct: 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSN 64
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GHG ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE T G+E TTGPLGQG+ANA
Sbjct: 65 GHGSMLIYSLLHLTGYD-LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANA 123
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+A+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYD
Sbjct: 124 VGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYD 183
Query: 269 DNHISIDGDTEIAFTENVDKRFEGLGWHVIWV---------------------------- 300
DN ISIDG E FT++ RFE GWHVI
Sbjct: 184 DNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMC 243
Query: 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGAT 360
T IGFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W G
Sbjct: 244 KTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQW-DAKEAGQA 302
Query: 361 LEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAE----ATRNLSQ 416
E+ WN KFA Y K YP+EAAEF G++P+ ++ + + A A+R SQ
Sbjct: 303 KESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQ 362
Query: 417 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 476
+ A LP LGGSADLA SN+TL +D + +GVRE GM AI NGI
Sbjct: 363 NAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINED-AAGNYIHYGVREFGMTAIANGI 421
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536
+LH G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +A
Sbjct: 422 SLHG-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA 480
Query: 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGA 594
S R PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G
Sbjct: 481 SLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGG 540
Query: 595 YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 654
Y++ D +P++I I TGSE+E+A A E+L G RVVS S + FD+Q AY+E
Sbjct: 541 YVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRE 598
Query: 655 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 714
SVLP AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+
Sbjct: 599 SVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAK 658
Query: 715 AKEV 718
AKE+
Sbjct: 659 AKEL 662
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 1185 bits (3068), Expect = 0.0
Identities = 336/706 (47%), Positives = 423/706 (59%), Gaps = 45/706 (6%)
Query: 53 LRTPTSRRRLSTSQASLPIRAAAVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHP 111
+ T ++ + S +P + L+ T++ A N IR LA+DAV++ANSGHP
Sbjct: 9 MGTLEAQTQGPGSMPPVPRFLDSFSGLDMTTSSPASTTLMANAIRALAMDAVQQANSGHP 68
Query: 112 GLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDD 171
G+PMG A +G L+ +++NP NP+W +RDRFVLS GHG ML Y+LLHL GYD + ++
Sbjct: 69 GMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYD-LPIEE 127
Query: 172 LKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVD 231
LKNFRQ SKTPGHPE TPG+E TTGPLGQG+ANAVG+AL E LAA +N+ D +IVD
Sbjct: 128 LKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVD 187
Query: 232 HYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFE 291
H+TYV LGDGC MEGI++EA SLAG L L KLIA YDDN ISIDGD F ++ KRFE
Sbjct: 188 HHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFHDDTPKRFE 247
Query: 292 GLGWHVIWV---------------------------TTTIGFGSPNKANSYSVHGSALGA 324
GW+VI T IG G+ KA + VHG+ LGA
Sbjct: 248 AYGWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCKTRIGNGAATKAGGHDVHGAPLGA 307
Query: 325 KEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFK 384
E+ TR+ LGW + PF +P++V W G E +WNA FA+Y KYP EAAEF+
Sbjct: 308 DEIAKTREALGWTWAPFVIPQEVYAAW-DAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFE 366
Query: 385 SISSGQLPAGWEKALPTYTP----ESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSN 440
+G LPA W ATR SQ + LA LP LLGGSADL SN
Sbjct: 367 RRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSN 426
Query: 441 MTLLKMFGDFQKDTPEE-----RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTD 495
+T K + + ++ +GVRE GM A NG+ LH G P+ TF F+D
Sbjct: 427 LTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGLVLHG-GYKPFGGTFLTFSD 485
Query: 496 YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNET 555
Y R A+R++AL + I+V THDSIGLGEDGPTHQ +EH+AS R +PN+ + RPAD ET
Sbjct: 486 YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVET 545
Query: 556 AGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIISD-NSSGNKPDVILIG 612
A A+ AV + PS L SRQ L A T + VEKG Y++ D + +ILI
Sbjct: 546 AVAWTYAV-AHQHPSCLIFSRQNLAFNARTDAQLANVEKGGYVLRDWDEEIVARKIILIA 604
Query: 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672
TGSE+E+A KA E L + G A RVVS S ++FD Q Y+E VLP V RV+IEAG T
Sbjct: 605 TGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGV-RRVAIEAGVT 663
Query: 673 FGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
W K VG +G +GID FG SAPAG ++K FG T E VI AK V
Sbjct: 664 DFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGFTVEHVIETAKAV 709
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 1176 bits (3044), Expect = 0.0
Identities = 331/673 (49%), Positives = 428/673 (63%), Gaps = 47/673 (6%)
Query: 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNR 141
+ + + +V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NR
Sbjct: 2 TQFTDIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINR 60
Query: 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPL 201
DRFVLS GH L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPL
Sbjct: 61 DRFVLSNGHAVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPL 118
Query: 202 GQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 261
GQG++NAVG+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG
Sbjct: 119 GQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLG 178
Query: 262 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------------------- 300
LIA YDDN I+IDG T I+F E+V KR+E GW V++V
Sbjct: 179 NLIAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSK 238
Query: 301 --------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHW 351
TTTIG+GS + A S+SVHG+ L A +V + G+ + F VP++V H+
Sbjct: 239 DKPTLIKMTTTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHY 297
Query: 352 SRHVAE-GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEA 410
+ + + G +WN F+EY+KK+PE AE SGQLPA WE LPTYT + A A
Sbjct: 298 QKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVA 357
Query: 411 TRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-----RNVRFGVR 465
TR LS+T L + LP L+GGSADL SN+T K DFQ + R +R+G+R
Sbjct: 358 TRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIR 417
Query: 466 EHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGED 525
EH MGAI NGI+ PY TF F Y A+R+SAL VI+V THDSIG+GED
Sbjct: 418 EHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGED 477
Query: 526 GPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT 585
GPTHQPIE LA FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+
Sbjct: 478 GPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGS 537
Query: 586 SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 645
SI+ KG Y++ D + PD+IL+ TGSE+ ++ +AA+ L RVVS + F
Sbjct: 538 SIESASKGGYVLQDVA---NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTF 594
Query: 646 DEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFG 705
D+Q Y+ SVLP V +S+E +T W K ++ GIDRFGAS A +++K FG
Sbjct: 595 DKQPLEYRLSVLPDNV-PIMSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFG 650
Query: 706 ITAEAVITAAKEV 718
T E V A++
Sbjct: 651 FTPEGVAERAQKT 663
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 1175 bits (3042), Expect = 0.0
Identities = 326/664 (49%), Positives = 421/664 (63%), Gaps = 42/664 (6%)
Query: 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNR 141
L SVN IRFLA+DAVEKA SGHPG+PMG AP+ ++L+ EVMR+NP +P W +R
Sbjct: 2 KETRDLETLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDR 61
Query: 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPL 201
DRFVLSAGHG ML YA+LHL GYD + ++LK+FRQWGSKTPGHPE TPG+EVTTGPL
Sbjct: 62 DRFVLSAGHGSMLLYAVLHLTGYD-LPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPL 120
Query: 202 GQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 261
GQG++ AVGLALAE+ LAA +N+P + +VDHYTYV+ DG MEG++ EA+SLAGH GL
Sbjct: 121 GQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLS 180
Query: 262 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------------------- 300
KLI F+DDN ISIDG T++AFTE+V R+ GW + V
Sbjct: 181 KLIVFWDDNRISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKLDER 240
Query: 301 ------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH 354
+ IGFGSP K +S HG LG + V+ATR+NLGWPY PF VPE+V +H
Sbjct: 241 PTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHM-DM 298
Query: 355 VAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNL 414
+G + W Y + YP+ E G+LP E+ P++ ATR
Sbjct: 299 REKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEE-PPSF---DKPIATRAA 354
Query: 415 SQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICN 474
S LN LA LP LLGGSADL SN T + DF + P R + FGVREH MGAI N
Sbjct: 355 SGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILN 414
Query: 475 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534
G+ LH G Y TF VF+DYMR AIR++AL ++V THDSI LGEDGPTHQP+EH
Sbjct: 415 GLNLHG-GYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEH 473
Query: 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGA 594
L S RAMPN+ ++RPAD ET A+ VA+ ++ P+ L L+RQ +P L+ G+ +G
Sbjct: 474 LMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLRGG 533
Query: 595 YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 654
Y++ D +P +L+ TGSE+ +A +A LR+ G VRVVS S+ELF Q +AY++
Sbjct: 534 YVLEDVE---EPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRK 590
Query: 655 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 714
VLP + V++EAG++ GWE+ K + +DRFGASAP ++Y+ G T E V A
Sbjct: 591 EVLPPGL-PVVAVEAGASLGWERYA---HKVVALDRFGASAPYPEVYERLGFTPERVAEA 646
Query: 715 AKEV 718
+
Sbjct: 647 FLSL 650
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 1169 bits (3026), Expect = 0.0
Identities = 320/663 (48%), Positives = 421/663 (63%), Gaps = 46/663 (6%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLS 147
+EK N IR LA D V+ SGHPG PMG APM +L+ EVM+YN ++P W +RDRFV+S
Sbjct: 6 IEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMS 65
Query: 148 AGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMAN 207
GHGC LQYALLH+AGY+ + DDLK FRQ GS+TPGHPE F TPG+EVTTGPLGQG+AN
Sbjct: 66 NGHGCALQYALLHMAGYN-LTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIAN 124
Query: 208 AVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267
AVGLA+AE HLAA +N+P IVDHYTYV GDGC MEG+ EA SLAGHL L KLI Y
Sbjct: 125 AVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIY 184
Query: 268 DDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------------------------- 300
D N+ISIDG T ++FTE +++ +G+HVI V
Sbjct: 185 DSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMI 244
Query: 301 --TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE 357
TTTIGFGS +K + VHG+ LG +++ + G P + + V +DV+ + H+ +
Sbjct: 245 VQTTTIGFGS-SKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDK 303
Query: 358 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQT 417
+ + W A+Y +P E A F + G+LP+GWE LPT S A ATR S+
Sbjct: 304 CSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPTN---SSAIATRKASEN 360
Query: 418 CLNALAKTLPGLLGGSADLASSNMTLLKM--FGDFQKDTPEERNVRFGVREHGMGAICNG 475
CL L +P L+GGSADL SN+T DF + E R +RFGVREH M AI NG
Sbjct: 361 CLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNG 420
Query: 476 IALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535
+ H G+IP+ TF F Y A+R++A+ VIYV THDSIG+GEDGPTHQP+E +
Sbjct: 421 LDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELV 479
Query: 536 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAY 595
A+ RAMPN+ ++RP+D ET+GA+ VA+++ P++L LSRQ +G+SI+GV GAY
Sbjct: 480 AALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHGAY 539
Query: 596 IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKES 655
+ D ++++ +GSE+ +A AA+ L + VRVVS ELFD Q D Y+++
Sbjct: 540 SVVDVP---DLQLVIVASGSEVSLAVDAAKALSGELR-VRVVSMPCQELFDAQPDTYRQA 595
Query: 656 VLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAA 715
VLPA V VS+EA +FGWEK +G+ FGASAPAG +YK+FGIT E V+
Sbjct: 596 VLPAGV-PVVSVEAYVSFGWEKYS---HAHVGMSGFGASAPAGVLYKKFGITVEEVVRTG 651
Query: 716 KEV 718
+E+
Sbjct: 652 REL 654
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 1167 bits (3022), Expect = 0.0
Identities = 300/668 (44%), Positives = 401/668 (60%), Gaps = 44/668 (6%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
++ + N IRFL++DA KA SGHPG+PMG A + +L+ + +++NP NP+W NRDRFV
Sbjct: 4 SIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFV 63
Query: 146 LSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGM 205
LS GHG ML Y+LLHL GYD + +D+KNFRQ SKTPGHPE TPG+E TTGPLGQG+
Sbjct: 64 LSNGHGSMLLYSLLHLTGYD-LSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGV 122
Query: 206 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 265
ANAVG+AL EK L+ RYN PD +++DH+TYV LGDGC MEG+++EA SLAG LGL KL+A
Sbjct: 123 ANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVA 182
Query: 266 FYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------- 300
F+DDN+ISIDGDT+ F++N +RF GWHVI
Sbjct: 183 FWDDNNISIDGDTKGWFSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTL 242
Query: 301 ---TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE 357
T IGFGSP KA + SVHGS L +E + K L W Y+ F +P+DV K+W +
Sbjct: 243 ICCKTVIGFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYW-DAREK 301
Query: 358 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAE----ATRN 413
G LEA W + + K + EF+ + S +LP G E A+ Y + ATR
Sbjct: 302 GQALEANWQGQRNLF--KDSPKFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRK 359
Query: 414 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAIC 473
SQ L L K +P + GGSADL SN T + +GVRE GM AI
Sbjct: 360 ASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIM 419
Query: 474 NGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 533
NG++L+ G+ PY TF VF+DY R AIR+SAL + V++VM+HDSIGLGEDGPTHQPIE
Sbjct: 420 NGLSLYG-GIKPYGGTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIE 478
Query: 534 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVE 591
H+ S R +PN+ + RPAD ET A+K AV ++ PS++ L+RQ L + T + +
Sbjct: 479 HVPSLRLIPNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNLMPVVQTQHQVANIA 538
Query: 592 KGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDA 651
+G Y++ DN + ++ TGSE+E+A K A E K G + V S E+F Q+
Sbjct: 539 RGGYLVKDNP---DAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHE 595
Query: 652 YKESVLPAAVSARVSIEAGSTFGWEKIVGSK-GKAIGIDRFGASAPAGKIYKEFGITAEA 710
YK++V+ + V +E W K + G+ GI FG SAPA ++K FG T E
Sbjct: 596 YKKTVIKDDI-PAVFVEMAQPDMWYKYMPKAGGEVKGIYSFGESAPAEDLFKRFGFTVEN 654
Query: 711 VITAAKEV 718
+ +
Sbjct: 655 ISNIVAKY 662
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 1111 bits (2877), Expect = 0.0
Identities = 262/661 (39%), Positives = 362/661 (54%), Gaps = 58/661 (8%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR 143
+ ++++ NT+RFL+ D V+KANSGHPG P+G A + +L +++NPKNP W NRDR
Sbjct: 2 NIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY-HLKHNPKNPTWLNRDR 60
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQ 203
V S GH L Y+ LHL+GYD + +DLKNFRQ SKTPGHPE T G+E+ TGPLGQ
Sbjct: 61 LVFSGGHASALLYSFLHLSGYD-LSLEDLKNFRQLHSKTPGHPE-ISTLGVEIATGPLGQ 118
Query: 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL 263
G+ANAVG A+A K ++DH Y + GDG EGI+ EA SLAG L
Sbjct: 119 GVANAVGFAMAAKKAQNLLGSD---LIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNF 175
Query: 264 IAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV----------------------- 300
I YD N+ISI+GD +AF ENV RFE G+ V+ +
Sbjct: 176 ILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCL 235
Query: 301 ---TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSRHVA 356
TTI G+ S+ HG+ LG + + ++ G+ FH+P+ K + V
Sbjct: 236 IIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVE 295
Query: 357 EGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQ 416
G EA+W K + K E + P + A P + + ATR+ +
Sbjct: 296 LGDLEEAKWKDKLEKSAK--KELLERLLN------PDFNKIAYPDFKGKD--LATRDSNG 345
Query: 417 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 476
LN LAK L G LGGSADL SN T L GDF E +N+ FG+REH M AI N
Sbjct: 346 EILNVLAKNLEGFLGGSADLGPSNKTELHSMGDF----VEGKNIHFGIREHAMAAINNAF 401
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536
A + +P+ ATFF+F++Y++ A RI+AL + ++ THDSIG+GEDGPTHQPIE L+
Sbjct: 402 ARYG-IFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLS 460
Query: 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 596
+FRAMPN L RPADG E A+++A+ N PS LSRQKL L V+ GAY+
Sbjct: 461 TFRAMPNFLTFRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGDVKNGAYL 519
Query: 597 ISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESV 656
+ ++ + L+ +GSE+ + ++A EL K G A VVS +ELF++Q AY+E +
Sbjct: 520 LKES---KEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQERL 576
Query: 657 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
L V + +EA + K K GI+ FG S +++ FG + ++
Sbjct: 577 LKGEV---IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSKLVNFIL 630
Query: 717 E 717
Sbjct: 631 S 631
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 845 bits (2185), Expect = 0.0
Identities = 163/671 (24%), Positives = 262/671 (39%), Gaps = 89/671 (13%)
Query: 77 ETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNP 136
+ AL + + N +R ++ A A SGHP A + +L+ MRY ++P
Sbjct: 3 HKPDQQKLQAL-KDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDP 61
Query: 137 YWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEV 196
+ DRFVLS GH + YA+ AG+ + E +L N R+ S GHP + +V
Sbjct: 62 RNPHNDRFVLSKGHAAPILYAVWAEAGF--LAEAELLNLRKISSDLDGHPVP-KQAFTDV 118
Query: 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG 256
TG LGQG+ A G+A K+ + + Y +LGDG EG EA + A
Sbjct: 119 ATGSLGQGLGAACGMAYTGKYF---------DKASYRVYCLLGDGELSEGSVWEAMAFAS 169
Query: 257 HLGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWV--------------- 300
L L+A D N + + + KR E GWH I V
Sbjct: 170 IYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA 229
Query: 301 ---------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHW 351
T G G + S HG L + + +
Sbjct: 230 KHQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYS--------------- 274
Query: 352 SRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEAT 411
+ +K + P+E A I++ ++P+ LP+Y AT
Sbjct: 275 ------------QIQSK-KKILATPPQEDAPSVDIANIRMPS-----LPSYKVGDKI-AT 315
Query: 412 RNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGA 471
R L L ++ D +S + F+K+ P+ R + + E M +
Sbjct: 316 RKAYGQALAKLGHASDRIIALDGDTKNSTFS-----EIFKKEHPD-RFIECYIAEQNMVS 369
Query: 472 ICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQP 531
I G A + +P+C+TF F IR++A+ E+ + +H + +GEDGP+
Sbjct: 370 IAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMA 428
Query: 532 IEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVE 591
+E LA FR++P + P+DG T A ++A AN K + SR + + + D
Sbjct: 429 LEDLAMFRSVPTSTVFYPSDGVATEKAVELA-ANTKGICFIRTSRPENAIIYNNNEDFQV 487
Query: 592 KGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS-----WELFD 646
A ++ V +IG G L A AAE L+K +RV+ + +L
Sbjct: 488 GQAKVVLK---SKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLIL 544
Query: 647 EQSDAYKESVLPA-AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFG 705
+ + A K +L I + G + ++R S ++ K FG
Sbjct: 545 DSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAELLKMFG 604
Query: 706 ITAEAVITAAK 716
I +A+ A +
Sbjct: 605 IDRDAIAQAVR 615
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 314 bits (805), Expect = 9e-96
Identities = 110/799 (13%), Positives = 205/799 (25%), Gaps = 152/799 (19%)
Query: 46 KSTSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAAL--------VEKSVNTIRF 97
+ P+ A+E ++ + +
Sbjct: 12 SGLVPRGSHMTNPVIGTPWQKLDRPVSEEAIEGMDKYWRVTNYMSIGQIYLRSNPLMKEP 71
Query: 98 LAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYA 157
D V+ GH G G L + R + F++ GHG +
Sbjct: 72 FTRDDVKHRLVGHWGTTPGLN----FLLAHINRLIADHQ---QNTVFIMGPGHGGPAGTS 124
Query: 158 LLHLAGYDSVQ-------EDDLKNFRQWGSKTPGHPE--NFETPGIEVTTGPLGQGMANA 208
++ G + E L+ F + S G P ETPG G LG +++A
Sbjct: 125 QSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHA 184
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN---EASSLAGHLGLGKLIA 265
G + + I+GDG G +++ L G ++
Sbjct: 185 YGAVMNNP--------------SLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLP 230
Query: 266 FYDDNHISIDGDTEIAF--TENVDKRFEGLGWHVIWVT---------------------- 301
N I T +A E + F G+G+H
Sbjct: 231 ILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETI 290
Query: 302 ---------------------------TTIGFGSPNK------ANSYSVHGSALGAKEVD 328
T G+ P S+ H L +
Sbjct: 291 FDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSWRAHQVPLASARDT 350
Query: 329 ATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS 388
+ + + PE++ + + + A
Sbjct: 351 EEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGA-----NPNANGGVIRED 405
Query: 389 GQLPAGWEKALPTYTPESP----AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLL 444
+LP + + EA R L C + + D +SN
Sbjct: 406 LKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNA 465
Query: 445 K--------MFGDFQKDTPEERNVRFGVREHGMGAICNGIALH-----SPGLIPYCATFF 491
G E V V E C G G+ +F
Sbjct: 466 TYEVTDKQWDNGYLSGLVDEHMAVTGQVTEQLSEHQCEGFLEAYLLTGRHGIWSSYESFV 525
Query: 492 VFTDYM--------RAAIRISALCE--AGVIYVMTHDSIGLGEDGPTHQP---IEHLASF 538
D M A +R + + V +++ +G +HQ L +
Sbjct: 526 HVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINK 585
Query: 539 RAMPNILM--LRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL--AGTSIDGVEKGA 594
+ + D N + + + + + +Q P + +E GA
Sbjct: 586 TFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWVTLDEARAELEAGA 645
Query: 595 YII---SDNSSGNKPDVILIGTGSELEIAA-KAAEELRKGGKAVRVVSFVSWELFDEQ-- 648
S+ + ++ V+L G A++ L K G +VV+ V +
Sbjct: 646 AEWKWASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSREN 705
Query: 649 -----SDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKA----IGIDRFGASAPAGK 699
+D + A + + + I +G G++
Sbjct: 706 NDEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFD 765
Query: 700 IYKEFGITAEAVITAAKEV 718
+ + + A+ AA ++
Sbjct: 766 MVRVNDMDRYALQAAALKL 784
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 1e-11
Identities = 138/717 (19%), Positives = 207/717 (28%), Gaps = 272/717 (37%)
Query: 2 ASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRRR 61
S+ TLS HG S EH L + T S S L+ + L PT
Sbjct: 4 YSTRPLTLS----------HG---SLEHV-LLVPTASFFIASQLQEQFNKILPEPT---- 45
Query: 62 LSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLA--VDAVEKANSGHPGLPMGCAP 119
A + E +T A LV +FL VE + G
Sbjct: 46 ----------EGFAADD-EPTTPAELV------GKFLGYVSSLVEPSKVGQ--------- 79
Query: 120 MGHILYDEVMRYNPKNPYWFNRDRFVLSAG--HGCMLQYALLHLAGYDSVQEDD-LKNF- 175
+D+V+ F L H L LL V+ + +KN+
Sbjct: 80 -----FDQVLNLCLTE---FENC--YLEGNDIH--ALAAKLLQENDTTLVKTKELIKNYI 127
Query: 176 --RQWGSKTPGHPEN---FETPGIEVTTGPL-------GQGMANAVGLALAEKHLAARYN 223
R + N F V G GQG + E L Y
Sbjct: 128 TARIMAKRPFDKKSNSALFRA----VGEGNAQLVAIFGGQGNTDDY---FEE--LRDLYQ 178
Query: 224 KPDNEIVDHYTY-VILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF 282
TY V++GD + ++ L +L I D E F
Sbjct: 179 ----------TYHVLVGD------LIKFSAET-----LSEL--------IRTTLDAEKVF 209
Query: 283 TENVDKRFEGLGWHVI-WVTTTIGFGSPNKA--NSY--SVHGS-------ALGAKEVDAT 330
T+ ++ ++ W+ P+ Y S+ S L V T
Sbjct: 210 TQGLN---------ILEWLEN------PSNTPDKDYLLSIPISCPLIGVIQLAHYVV--T 252
Query: 331 RKNLGWPYEPFHVPEDVKKH--WSRHVAEG---ATLEAE---WNAKFAEYEKKYPE---- 378
K LG+ P +++ + + ++G A AE W + F +K
Sbjct: 253 AKLLGFT------PGELRSYLKGATGHSQGLVTAVAIAETDSWES-FFVSVRKAITVLFF 305
Query: 379 ------EAAEFKSISSGQLPAGWE--KALPTYTPESPAEATRNLSQTCL----NALAKTL 426
EA S+ L E + +P SP + NL+Q + N L
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVP-----SPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 427 PG----------------LLGGSADLASSNMTLLKMF---GDFQKDTP-EERNVRFGVRE 466
P + G L N+TL K G Q P ER ++F R
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR- 419
Query: 467 HGMGAICNGIAL------HSPGLIPYCATFFVFTDYMRAAIRISALCEAGV-IYVMTHDS 519
L HS L+P A+ + D ++ + +A + + +Y T D
Sbjct: 420 ----------FLPVASPFHSHLLVP--ASDLINKDLVKNNVSFNA-KDIQIPVY-DTFD- 464
Query: 520 IGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSIL-ALSRQ- 577
G D LR G+ + I+ + R
Sbjct: 465 ---GSD---------------------LRVLSGSIS-------------ERIVDCIIRLP 487
Query: 578 ----KLPHLAGTSI-D---GVEKG-AYIISDNSSGNKPDVILIGT---GSELEIAAK 622
T I D G G + N G VI+ GT + + K
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 55.8 bits (134), Expect = 4e-08
Identities = 44/244 (18%), Positives = 76/244 (31%), Gaps = 71/244 (29%)
Query: 56 PTSRRRLSTSQASLPIRAAAVE-TLETSTDAALVEKSVNTIRFLAVDAVEKANS---GHP 111
P + + IR ET D L + + F ++ E + S
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI----FKEIN--EHSTSYTFRSE 1722
Query: 112 -GL--------P----MGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH--GCMLQY 156
GL P M A E ++ AGH G +Y
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAF------EDLKS------KGLIPADATFAGHSLG---EY 1767
Query: 157 -ALLHLAGYDSVQEDDLK--NFRQWGSKTPGHPENFETPGIEVTTGPLGQGMA----NAV 209
AL LA S+ E ++ +R G P E+ G GM V
Sbjct: 1768 AALASLADVMSI-ESLVEVVFYR-------GMTMQVAVPRDEL--GRSNYGMIAINPGRV 1817
Query: 210 GLALAE---KHLAARYNKPDNEIV-------DHYTYVILGDGCQMEGIANEASSLAGHLG 259
+ ++ +++ R K +V ++ YV GD + + + +++ +
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD---LRAL-DTVTNVLNFIK 1873
Query: 260 LGKL 263
L K+
Sbjct: 1874 LQKI 1877
Score = 46.2 bits (109), Expect = 4e-05
Identities = 88/559 (15%), Positives = 152/559 (27%), Gaps = 198/559 (35%)
Query: 245 EGIA--NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTE---NVDKRFE-----GLG 294
EG A +E ++ A L +GK + + ++ F + FE G
Sbjct: 46 EGFAADDEPTTPA-EL-VGKFLGYVSS---LVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 295 WHVIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH 354
H + + + + + + A+ + P++ R
Sbjct: 101 IHAL-AAKLLQENDTTLVKTKELIKNYITARIM------AKRPFDKKSNSA-----LFRA 148
Query: 355 VAEG-ATLEA---------EWNAKFAE----YEKKYPEEAAEFKSISSGQL------PAG 394
V EG A L A ++ F E Y+ Y + S+ L
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDY---FEELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLD 204
Query: 395 WEKALPTY--------TPES-PAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLK 445
EK P + P + L ++ + P + G LA + K
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDY-------LLSIPISCPLI--GVIQLAHY-VVTAK 254
Query: 446 MFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFV-------FTDYMR 498
+ G TP E + + G HS GL+ A F +R
Sbjct: 255 LLGF----TPGE-----------LRSYLKGATGHSQGLVT--AVAIAETDSWESFFVSVR 297
Query: 499 AAIRIS------ALCEAGVIYV---MTHDSIGLGEDGPTH----------QPIEHLASFR 539
AI + + + DS+ E P+ Q +++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 540 A-MP----------N-----------------ILMLR----PADGNETAGAYKVAVANRK 567
+ +P N L LR P+ +++ ++ + RK
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS----RIPFSERK 413
Query: 568 RPSILALSRQKLP-----H---LAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEI 619
L S + LP H L S I D N + +++I
Sbjct: 414 ----LKFSNRFLPVASPFHSHLLVPAS-------DLINKDLVKNN----VSF-NAKDIQI 457
Query: 620 AAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIV 679
V S + E ++ + V WE
Sbjct: 458 P---------------VYDTFDGSDLRVLSGSISERIVDCIIRLPVK--------WETTT 494
Query: 680 GSKGKAIGIDRFGASAPAG 698
K I +D FG +G
Sbjct: 495 QFKATHI-LD-FGPGGASG 511
Score = 40.0 bits (93), Expect = 0.003
Identities = 53/310 (17%), Positives = 83/310 (26%), Gaps = 120/310 (38%)
Query: 324 AKEV----DA-TRKNLGWPYEPFHVPEDVK---KHWSRHV--AEGATLEAEWNA-KFAEY 372
A++V D + G F + + V + + H +G + ++A F
Sbjct: 1642 AQDVWNRADNHFKDTYG-----FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 373 EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGG 432
+ FK I+ + +YT S LS T T P L
Sbjct: 1697 VDGKLKTEKIFKEIN---------EHSTSYTFRSEKGL---LSAT-----QFTQPALT-- 1737
Query: 433 SADLAS-SNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFF 491
L + LK G D A G HS G
Sbjct: 1738 ---LMEKAAFEDLKSKGLIPAD-----------------ATFAG---HSLG--------- 1765
Query: 492 VFTDYMRAAIRISAL-CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPA 550
+Y +AL A V+ IE L ++ R
Sbjct: 1766 ---EY-------AALASLADVM------------------SIESLVE------VVFYR-- 1789
Query: 551 DGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVIL 610
G A R ++A++ P S E Y++ + +
Sbjct: 1790 -GMTMQVAVPRDELGRSNYGMIAIN----PGRVAASFS-QEALQYVV---------ERVG 1834
Query: 611 IGTGSELEIA 620
TG +EI
Sbjct: 1835 KRTGWLVEIV 1844
Score = 37.3 bits (86), Expect = 0.021
Identities = 27/167 (16%), Positives = 44/167 (26%), Gaps = 59/167 (35%)
Query: 120 MGHILYD-------------------------EVMRYNPKNPYWFNRDRFVLSAGHGCML 154
MG LY +++ NP N F G
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH----FGGEKGKRIRE 1686
Query: 155 QYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA-VGLAL 213
Y+ + + K F++ + + F + G L L L
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSE-----KGLLSA-TQFTQPALTL 1738
Query: 214 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGH-LG 259
E AA + L + +G+ ++ AGH LG
Sbjct: 1739 ME--KAA--------------FEDL----KSKGLIPADATFAGHSLG 1765
Score = 33.1 bits (75), Expect = 0.40
Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 57/151 (37%)
Query: 2 ASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRRR 61
++S +F + LL+ T FTQ AL+ + +F LK
Sbjct: 1714 STSYTFRSEKGLLSA-TQ---FTQP------ALTLMEKAAFEDLK--------------- 1748
Query: 62 LSTSQASLPIRA----------------AAVETLETSTDAA-LVEKSVNTIRFLAV-DAV 103
S+ +P A A V ++E +V R + + AV
Sbjct: 1749 ---SKGLIPADATFAGHSLGEYAALASLADVMSIE---SLVEVVFY-----RGMTMQVAV 1797
Query: 104 EKANSGHPGLPM-GCAP--MGHILYDEVMRY 131
+ G M P + E ++Y
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 51.0 bits (123), Expect = 1e-06
Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 37/215 (17%)
Query: 521 GL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKL 579
G+ G DG THQ L+ R +P ++++ P+D NE PS + R
Sbjct: 422 GIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNA 481
Query: 580 PHLAGTSIDGVEKG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 638
+ T ++ + G + + ++ G+ + AAK AE L +V
Sbjct: 482 VGVELTPLEKLPIGKGIVKRRGE-----KLAILNFGTLMPEAAKVAESLN-----ATLVD 531
Query: 639 --FVS---WELFDEQSDAYKESVLPAAVSARVSIEAGSTFG----------WEKIVGSKG 683
FV L E + +++ A V++E + G
Sbjct: 532 MRFVKPLDEALILEMAASHE---------ALVTVEENAIMGGAGSGVNEVLMAHRKPVPV 582
Query: 684 KAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 717
IG+ D F ++ E G+ A + K
Sbjct: 583 LNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKA 617
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 47.1 bits (113), Expect = 2e-05
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 37/215 (17%)
Query: 521 GL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKL 579
G+ G DG TH + L+ R++P + + P D E G K A + P + R
Sbjct: 425 GIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-DGPFAIRYPRGNT 483
Query: 580 PHLAGTSIDGVEKG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 638
+ + ++ G + DV+++ G L+ A KAAE+L G VV+
Sbjct: 484 AQVPAGTWPDLKWGEWERLKGGD-----DVVILAGGKALDYALKAAEDLPGVG----VVN 534
Query: 639 --FVS---WELFDEQSDAYKESVLPAAVSARVSIEAGSTFG----------WEKIVGSKG 683
FV E+ E + A +++E + G +
Sbjct: 535 ARFVKPLDEEMLREVGGRAR---------ALITVEDNTVVGGFGGAVLEALNSMNLHPTV 585
Query: 684 KAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 717
+ +GI D F A A ++ GI A A+ T E
Sbjct: 586 RVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAE 620
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 42.1 bits (99), Expect = 6e-04
Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 41/239 (17%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHI--------LYDEVMRYNPKN 135
+ L + + IR+ A+ V +A+ L G GH+ +YD N
Sbjct: 74 NLELERRIRSAIRWNAIMTVLRASKKDLEL--G----GHMASFQSSATIYDVCF-----N 122
Query: 136 PYWFNRDR-----FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQ--WGSKTPGHPEN 188
++ R+ V GH YA L G + ++ L NFRQ G+ +P
Sbjct: 123 HFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLT--QEQLDNFRQEVHGNGLSSYPHP 180
Query: 189 FETPGI-EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247
P + T +G G A+ A K+L R K + Y LGDG E
Sbjct: 181 KLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTS---KQTVYAFLGDGEMDEPE 237
Query: 248 ANEASSLAGHLGLGKLIAFYDDNHISID----GDTEIAFTENVDKRFEGLGW---HVIW 299
+ A ++A L L+ + N +D G+ +I ++ FEG GW V+W
Sbjct: 238 SKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII--NELEGIFEGAGWNVIKVMW 294
Score = 36.7 bits (85), Expect = 0.030
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 588 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSW-ELF 645
+G+ KG Y + G+K V L+G+GS L +AAE L K G V S S+ EL
Sbjct: 707 EGIRKGIYKLET-IEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELA 765
Query: 646 DEQSDAYKESVLPAAVSARVS 666
+ D + ++L + RV
Sbjct: 766 RDGQDCERWNMLHPLETPRVP 786
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.004
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 24/50 (48%)
Query: 373 EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPES-PAEATRNLSQTCLNA 421
EK+ K + + +L Y +S PA A + A
Sbjct: 18 EKQ------ALKKL---------QASLKLYADDSAPALA--------IKA 44
Score = 30.3 bits (67), Expect = 1.3
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 13/38 (34%)
Query: 325 KEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLE 362
K++ A+ K Y P +A AT+E
Sbjct: 23 KKLQASLK----LYADDSAPA---------LAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.086
Identities = 63/467 (13%), Positives = 119/467 (25%), Gaps = 143/467 (30%)
Query: 262 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWVTTTIGFGSPNKAN-SYSVHGS 320
+ +D + D I E +D H+I S + + + + +
Sbjct: 28 AFVDNFDCKDVQ-DMPKSILSKEEID--------HII--------MSKDAVSGTLRLFWT 70
Query: 321 ALGAKE-------VDATRKNLGWPYEPFHV----PEDVKKHWSRHVAEGATLEAEWNA-- 367
L +E + R N + P P + + + + +N
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI------EQRDRLYNDNQ 124
Query: 368 KFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLP 427
FA+Y + + + +AL P +N+ +
Sbjct: 125 VFAKYNVSRLQPYLKLR------------QALLELRPA------KNV----------LID 156
Query: 428 GLLG-G----SADLASSNMTLLKM-FGDF-----QKDTPEER-------NVRFGVREHGM 469
G+LG G + D+ S KM F F ++PE +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 470 GAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV---------IYVMTHD-S 519
+ I L + Y + + + A I + T
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 520 I--GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQ 577
+ L TH ++H + L P E L Q
Sbjct: 277 VTDFLSAATTTHISLDHHSM--------TLTPD---EVKSLL----LK-----YLDCRPQ 316
Query: 578 KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVI-LIGTGSELEIAAKAAEELRK-GGKAVR 635
LP + N P + +I + + + +
Sbjct: 317 DLPREV-----------------LTTN-PRRLSIIAE--SIRDGLATWDNWKHVNCDKLT 356
Query: 636 VVSFVSWELFD--EQSDAYKE-SVLPAAVSARVSIEAGSTFGWEKIV 679
+ S + + E + SV P SA + S W ++
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPP--SAHIPTILLSLI-WFDVI 400
Score = 35.2 bits (80), Expect = 0.098
Identities = 48/370 (12%), Positives = 85/370 (22%), Gaps = 147/370 (39%)
Query: 6 SFTLS-QALL-TRGTS-------HHGFTQSSEHHRLALS---TLSLPSFSGLKSTSSSTL 53
+F LS + LL TR S +HH + L+ SL
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LL---------- 308
Query: 54 RTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTI---RFLAVDAVEKA---- 106
+ L LP S A + + T + + D +
Sbjct: 309 ------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 107 -NSGHPGLPMGCAPMGHILYDE--VMRYNPKNP------YWFNRDRFV------------ 145
N P +D V + P WF+ +
Sbjct: 363 LNVLEPAEYRKM-------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 146 LSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGM 205
L ++ + +LK EN
Sbjct: 416 LVEKQPKESTISIPSIY-------LELK----------VKLEN----------------- 441
Query: 206 ANAVGLALAEKH--LAARYNKPDN--------EIVDHYTYVILG---DGCQMEG------ 246
H + YN P +D Y Y +G +
Sbjct: 442 -------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 247 ------------IANEASSLAGHLGLGKLIA---FYDDNHISIDGDTEIAFTENVD--KR 289
I +++++ + + FY +I D + + V+
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-YIC---DNDPKYERLVNAILD 550
Query: 290 F-EGLGWHVI 298
F + ++I
Sbjct: 551 FLPKIEENLI 560
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 34.0 bits (78), Expect = 0.090
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 562 AVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSEL-EIA 620
AV +L + V++GA + + PDVI IG G +
Sbjct: 52 AVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA-FDDVPDNPDVIFIGGGLTAPGVF 110
Query: 621 AKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 654
A A + L GG+ V + V+ E K+
Sbjct: 111 AAAWKRLPVGGRL--VANAVTVESEQMLWALRKQ 142
>2vu4_A Oxygen-evolving enhancer protein 2; kDa protein, transit peptide,
higher plants, photosynthes photosystem II, membrane,
thylakoid, chloroplast; 1.98A {Spinacia oleracea}
Length = 273
Score = 33.5 bits (75), Expect = 0.19
Identities = 12/76 (15%), Positives = 22/76 (28%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS++ F A ++ + G + ++ L + SRR
Sbjct: 7 MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRR 66
Query: 61 RLSTSQASLPIRAAAV 76
T + V
Sbjct: 67 LALTVLIGAAAVGSKV 82
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural
genomics, PSI-2, protein structu initiative; 1.90A
{Thermoplasma acidophilum}
Length = 118
Score = 30.4 bits (69), Expect = 0.71
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 639
+ D+ + GS+ E+L++ G + ++
Sbjct: 13 EADITFVTWGSQKGPILDVIEDLKEEGISANLLYL 47
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 30.6 bits (69), Expect = 1.8
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 604 NKPDVILIGTGSELEIAAKAAEELRKGG 631
+L EL + A+A E + G
Sbjct: 71 EGVTALLTLIDPELGLLAQATERFQAIG 98
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 30.8 bits (70), Expect = 1.8
Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 18/90 (20%)
Query: 175 FRQWGSKTPGH------PENFETPGIEVTT--GPLGQGMANAVGLALAEKHLAARYNKPD 226
Q S P + T G L AVG A+A K D
Sbjct: 149 ICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAI------KGD 202
Query: 227 NEIVDHYTYVILGDGCQMEGIANEASSLAG 256
+I + GDG E + A + A
Sbjct: 203 TKIASAWI----GDGATAESDFHTALTFAH 228
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 30.6 bits (70), Expect = 1.8
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 358 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLS 415
+E K A ++I LP +A + EA R L+
Sbjct: 232 AGAVEPAAEQGLQAAIKAAERAGASVQAID---LPEAVHEAWRIHPIIQDFEAHRALA 286
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 30.4 bits (68), Expect = 2.2
Identities = 13/73 (17%), Positives = 23/73 (31%)
Query: 473 CNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 532
+G L + + V + A + E V ++ +G DG H
Sbjct: 327 LSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDER 386
Query: 533 EHLASFRAMPNIL 545
H + P +L
Sbjct: 387 PHPRLWGTFPRVL 399
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 30.4 bits (69), Expect = 2.3
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 556 AGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGS 615
G R+ + Q + T+ G + D+ DVI+ TG+
Sbjct: 203 YGLEVWMANRREPTEV----EQTVIEETKTNYYNSSNGYDKLKDSVGK--FDVIIDATGA 256
Query: 616 ELEIAAKAAEELRKGGKAV 634
++ I L + G
Sbjct: 257 DVNILGNVIPLLGRNGVLG 275
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Bordetella parapertussis 12822} PDB:
2k2e_A
Length = 150
Score = 29.3 bits (65), Expect = 2.4
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 604 NKPDVILIGTGSELE-IAAKAAEELRKGGKAVRVVSFVS 641
N P+V+L+GTG + + L G V + +
Sbjct: 87 NAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQA 125
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 93
Score = 28.3 bits (62), Expect = 2.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 363 AEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTP 404
++W E ++KY E A E+++ + G+ P EK P +T
Sbjct: 48 SDWALLREEEKEKYAEMAREWRA-AQGKDPGPSEKQKPVFTS 88
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 30.2 bits (67), Expect = 3.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
F+ G ML + + G ++VQ + GS+TPGH EN + + GP
Sbjct: 214 FMRVTSTGNMLSHVGHTILGMNTVQ----LYMKVPGSRTPGHQENNNFCSVNINIGP 266
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 29.8 bits (67), Expect = 3.8
Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 20/100 (20%)
Query: 346 DVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPE 405
D K++ + + + L + F E K + +
Sbjct: 652 DTKEYIYKQIGD--KLNDVYYKMFKSLEAKADD----------------LTYFNDESHVD 693
Query: 406 SPAEATRNLSQTCLNALAKTLPGLLGGSAD--LASSNMTL 443
R L T L+ L+K + S +
Sbjct: 694 FDQMNMRTLRNTLLSLLSKAQYPNILNEIIEHSKSPYPSN 733
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 29.6 bits (67), Expect = 3.8
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 589 GVEKGAYIISDNSSGNKPDVILIGTGSELEIAA-KAAEELRKGGKAVRVVSFVSWELFDE 647
++ ++ N + I +E A + A + R G+AV + D
Sbjct: 319 RIDLLVEALNGEIISNGHEQTCILFSNERRFEAIELARKKRANGEAVVLQDLAGVTDVDA 378
Query: 648 QSDAYKESV 656
S Y++ +
Sbjct: 379 MSSNYQDVI 387
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 29.4 bits (67), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 607 DVILIGTGSELEIAAKAAEELRKGGKAVRVV 637
D+ +I G+ + + KAA EL K G + VV
Sbjct: 203 DITIIAYGAMVHESLKAAAELEKEGISAEVV 233
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 29.4 bits (67), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 607 DVILIGTGSELEIAAKAAEELRKGGKAVRVV 637
D+ LI G+ + +AA EL K G + V+
Sbjct: 204 DLTLICYGTVMPEVLQAAAELAKAGVSAEVL 234
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 29.1 bits (66), Expect = 4.6
Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 18/90 (20%)
Query: 175 FRQWGSKTPGH------PENFETPGIEVTT--GPLGQGMANAVGLALAEKHLAARYNKPD 226
Q + PE+ + + T P+ + A G A++ K +
Sbjct: 112 LGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMK-----LLRTG 166
Query: 227 NEIVDHYTYVILGDGCQMEGIANEASSLAG 256
GDG EG + A
Sbjct: 167 Q-----VAVCTFGDGATSEGDWYAGINFAA 191
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP:
c.34.1.1
Length = 194
Score = 28.7 bits (65), Expect = 4.6
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 609 ILIG-TGSELEIAA-KAAE---ELRKGGKAVRVV 637
+LIG GS I++ + + K +RVV
Sbjct: 11 LLIGICGS---ISSVGISSYLLYFKSFFKEIRVV 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 29.3 bits (65), Expect = 4.8
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 124 LYDEVMRYNPKNP-YWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSK 181
++ PKN W +R R ++ L+ L + D KN+ W +
Sbjct: 154 YITAIIEEQPKNYQVWHHR-RVLVE-----WLRDPSQELEFIADILNQDAKNYHAWQHR 206
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 29.2 bits (66), Expect = 4.9
Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
R+ VL L+ + G DL RQ +F T + P
Sbjct: 114 REAGVLMY-RDYPLELFMAQCYG----NISDLGKGRQMPVHYGCKERHFVTI-----SSP 163
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG 256
L + AVG A A K N +V Y G+G EG A+ + A
Sbjct: 164 LATQIPQAVGAAYAAKR------ANANRVVICYF----GEGAASEGDAHAGFNFAA 209
>2wsc_G Photosystem I reaction center subunit V, chloroplastic;
photosynthesis, electron transfer, membrane proteins,
large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL;
3.30A {Spinacia oleracea} PDB: 2wse_G* 2wsf_G* 2o01_G*
3lw5_G*
Length = 167
Score = 28.5 bits (62), Expect = 5.2
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSS-TLRTPTSR 59
MA++++ S L + Q +H + L SFSGL+ + + +S
Sbjct: 1 MAAATASLSSTLLAPCSSKQPQPQQQHQHQQ-----LKCKSFSGLRPLKLNISSNNSSSS 55
Query: 60 RRLSTSQASLPIRAAAVETLETSTDAAL 87
+S+++ S+ RA +L S L
Sbjct: 56 LSMSSARRSMTCRAELSPSLVISLSTGL 83
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency
decline, ATP-binding, DNA DAMA repair, DNA-binding,
helicase, hydrolase; 1.95A {Escherichia coli} PDB:
2b2n_A* 4dfc_A
Length = 483
Score = 29.3 bits (66), Expect = 5.4
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 367 AKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPA 408
+++ + + + ++ +S G LPAG E P + E
Sbjct: 229 SQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLP 270
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 28.7 bits (65), Expect = 6.4
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
Query: 470 GAICN--------GIALHSPGLIPYCATFFVFTDYMRAA--------IRISALCEAGVIY 513
G+I G+ PG + Y A MR IR++++ +GV
Sbjct: 151 GSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVET 210
Query: 514 VMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPAD 551
M ++ + + + +L P D
Sbjct: 211 PMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLAPED 248
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha; geranylgeranyltrasferase, ggtase,
ggtase-I, PGGT, prenyltransferase, farnesyltransferase;
HET: B3P GRG; 1.80A {Candida albicans}
Length = 306
Score = 28.5 bits (63), Expect = 6.8
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 124 LYDEVMRYNPKNP-YWFNRDRFVLSAGHGCMLQYALLH-LAGYDSVQEDDLKNFRQWG 179
+E+ N KN W R + + +++ D KN W
Sbjct: 91 WCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWS 148
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 28.8 bits (65), Expect = 7.4
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 41 SFSGLKSTSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTI 95
+FSGL ++ +R + RL SL + A L T+ AL + +
Sbjct: 203 AFSGLL---TAAMRAYDAGERLEDICYSL--QEYAFSMLTEITERALAHTNKGEV 252
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase,
metal-binding, metalloprotease, protease, zinc, keops
complex, ATPase, metal ION binding; 3.02A {Thermoplasma
acidophilum}
Length = 334
Score = 28.7 bits (65), Expect = 7.9
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 41 SFSGLKSTSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTI 95
+FSG+ ++ L+ + + + S+ + A L + AL + I
Sbjct: 204 AFSGIL---TAALQYLKTGQAIEDISYSI--QETAFAMLVEVLERALYVSGKDEI 253
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 28.3 bits (64), Expect = 9.4
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 358 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLS 415
L+ + F + K+ +E E K +S LP + ++PTY +P+EA+ NL+
Sbjct: 262 EYELQPQVKEAFENFIKELEKEGFEIKEVS---LPH-VKYSIPTYYIIAPSEASSNLA 315
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.390
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,265,875
Number of extensions: 718293
Number of successful extensions: 1939
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1814
Number of HSP's successfully gapped: 76
Length of query: 719
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 619
Effective length of database: 3,909,693
Effective search space: 2420099967
Effective search space used: 2420099967
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.9 bits)