Query 005023
Match_columns 718
No_of_seqs 328 out of 1448
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 16:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1331 Highly conserved prote 100.0 3E-169 7E-174 1409.4 66.6 631 2-712 32-665 (667)
2 KOG2244 Highly conserved prote 100.0 4E-168 8E-173 1338.8 55.2 664 2-711 101-785 (786)
3 PF03190 Thioredox_DsbH: Prote 100.0 1.3E-47 2.9E-52 368.5 11.8 135 2-136 26-163 (163)
4 cd02955 SSP411 TRX domain, SSP 100.0 7.3E-30 1.6E-34 237.9 12.9 118 2-119 4-124 (124)
5 cd00249 AGE AGE domain; N-acyl 99.9 1.4E-24 3.1E-29 239.1 26.9 258 214-599 17-275 (384)
6 cd00249 AGE AGE domain; N-acyl 99.9 7.1E-22 1.5E-26 217.7 34.0 308 156-600 15-339 (384)
7 PF07221 GlcNAc_2-epim: N-acyl 99.7 6.6E-17 1.4E-21 176.5 17.7 240 232-596 1-246 (346)
8 PF07221 GlcNAc_2-epim: N-acyl 99.7 4.9E-17 1.1E-21 177.5 10.1 269 206-546 38-329 (346)
9 cd02960 AGR Anterior Gradient 99.7 2.4E-16 5.3E-21 147.4 8.5 79 3-90 13-94 (130)
10 cd02958 UAS UAS family; UAS is 99.7 3.9E-16 8.4E-21 143.5 9.7 100 3-114 7-111 (114)
11 PF13899 Thioredoxin_7: Thiore 99.6 2.7E-15 5.8E-20 129.9 6.3 73 3-84 7-82 (82)
12 COG2942 N-acyl-D-glucosamine 2 99.5 1.3E-12 2.8E-17 140.6 21.8 304 220-547 23-358 (388)
13 PF03663 Glyco_hydro_76: Glyco 99.5 2.5E-12 5.4E-17 141.9 22.3 288 159-595 8-316 (370)
14 cd02951 SoxW SoxW family; SoxW 99.4 7.5E-13 1.6E-17 123.4 8.7 105 4-114 4-119 (125)
15 cd02959 ERp19 Endoplasmic reti 99.4 5.9E-13 1.3E-17 123.3 7.5 103 3-115 9-114 (117)
16 smart00594 UAS UAS domain. 99.4 8.1E-13 1.8E-17 123.2 8.1 78 3-86 17-97 (122)
17 COG1331 Highly conserved prote 99.4 3.5E-11 7.6E-16 137.3 21.6 157 248-528 406-571 (667)
18 cd02953 DsbDgamma DsbD gamma f 99.3 4.3E-12 9.4E-17 114.3 8.0 92 3-98 1-97 (104)
19 PF03663 Glyco_hydro_76: Glyco 99.1 4.4E-09 9.6E-14 116.2 19.5 166 408-598 86-256 (370)
20 PRK00293 dipZ thiol:disulfide 99.1 2.8E-10 6E-15 132.2 9.5 101 3-114 464-570 (571)
21 PF13098 Thioredoxin_2: Thiore 99.0 8.3E-11 1.8E-15 107.0 1.5 95 9-110 1-112 (112)
22 cd02991 UAS_ETEA UAS family, E 99.0 1.2E-09 2.5E-14 101.2 8.3 96 3-114 7-113 (116)
23 cd04791 LanC_SerThrkinase Lant 99.0 2E-08 4.3E-13 108.2 18.2 161 410-604 78-238 (321)
24 COG2143 Thioredoxin-related pr 98.8 1.8E-08 4E-13 95.4 8.8 112 4-122 33-157 (182)
25 KOG2244 Highly conserved prote 98.7 7.5E-08 1.6E-12 106.1 13.0 195 207-528 473-679 (786)
26 PF07470 Glyco_hydro_88: Glyco 98.6 7.9E-06 1.7E-10 89.2 23.9 153 419-598 127-287 (336)
27 COG2942 N-acyl-D-glucosamine 2 98.6 7.5E-06 1.6E-10 89.0 21.1 153 415-594 115-271 (388)
28 cd02950 TxlA TRX-like protein 98.5 1.3E-07 2.9E-12 90.6 6.6 82 4-96 11-98 (142)
29 cd02949 TRX_NTR TRX domain, no 98.4 5E-07 1.1E-11 80.4 6.2 75 11-97 11-89 (97)
30 COG4232 Thiol:disulfide interc 98.4 6.1E-07 1.3E-11 101.7 8.3 82 5-91 464-550 (569)
31 PRK10996 thioredoxin 2; Provis 98.2 2E-06 4.3E-11 82.1 7.0 92 3-112 42-137 (139)
32 cd04791 LanC_SerThrkinase Lant 98.2 0.00015 3.2E-09 78.2 20.7 133 419-596 142-274 (321)
33 cd02954 DIM1 Dim1 family; Dim1 98.2 6.3E-06 1.4E-10 76.0 8.3 76 4-91 3-83 (114)
34 PF07944 DUF1680: Putative gly 98.1 0.00035 7.6E-09 80.9 23.8 241 205-592 77-331 (520)
35 cd02956 ybbN ybbN protein fami 98.0 8.8E-06 1.9E-10 71.8 6.4 67 12-90 11-80 (96)
36 cd02984 TRX_PICOT TRX domain, 98.0 2E-05 4.3E-10 69.5 6.8 76 4-91 3-83 (97)
37 COG4225 Predicted unsaturated 97.9 0.0014 3E-08 70.2 21.5 271 164-601 19-306 (357)
38 PLN00410 U5 snRNP protein, DIM 97.9 2.4E-05 5.1E-10 74.9 7.3 77 4-92 12-95 (142)
39 cd02986 DLP Dim1 family, Dim1- 97.9 3.6E-05 7.7E-10 70.7 6.8 67 12-90 13-82 (114)
40 TIGR01126 pdi_dom protein disu 97.9 5E-05 1.1E-09 67.1 7.6 75 4-89 4-83 (102)
41 TIGR01068 thioredoxin thioredo 97.8 6.8E-05 1.5E-09 65.9 8.3 76 3-90 3-82 (101)
42 cd03000 PDI_a_TMX3 PDIa family 97.8 4.1E-05 9E-10 68.9 6.4 73 3-88 6-84 (104)
43 cd02948 TRX_NDPK TRX domain, T 97.8 7E-05 1.5E-09 67.3 7.3 75 4-91 8-86 (102)
44 cd02997 PDI_a_PDIR PDIa family 97.7 8.1E-05 1.8E-09 66.2 7.2 75 3-89 7-88 (104)
45 cd02961 PDI_a_family Protein D 97.7 8.4E-05 1.8E-09 64.8 7.0 76 3-89 5-85 (101)
46 PF06662 C5-epim_C: D-glucuron 97.7 0.0014 3.1E-08 65.7 15.9 144 418-590 32-186 (189)
47 PF07470 Glyco_hydro_88: Glyco 97.7 0.0032 6.8E-08 68.8 20.0 241 206-575 85-335 (336)
48 cd02985 TRX_CDSP32 TRX family, 97.7 0.00016 3.5E-09 65.1 8.0 68 13-90 15-85 (103)
49 cd03003 PDI_a_ERdj5_N PDIa fam 97.7 0.00011 2.4E-09 65.6 6.6 74 4-89 9-85 (101)
50 cd02993 PDI_a_APS_reductase PD 97.6 0.00015 3.2E-09 66.0 7.1 74 5-88 13-91 (109)
51 cd04792 LanM-like LanM-like pr 97.6 0.0055 1.2E-07 75.0 23.0 252 237-595 475-734 (825)
52 cd02996 PDI_a_ERp44 PDIa famil 97.6 0.00017 3.7E-09 65.2 7.4 75 2-88 7-90 (108)
53 cd02963 TRX_DnaJ TRX domain, D 97.6 8.6E-05 1.9E-09 67.9 5.4 68 11-90 22-93 (111)
54 cd02947 TRX_family TRX family; 97.6 0.00014 3E-09 62.0 6.3 72 6-90 3-77 (93)
55 PHA02278 thioredoxin-like prot 97.5 0.00016 3.6E-09 65.5 6.3 82 4-97 5-94 (103)
56 TIGR01295 PedC_BrcD bacterioci 97.5 0.0003 6.6E-09 65.7 8.2 84 4-91 14-105 (122)
57 cd04434 LanC_like LanC-like pr 97.5 0.02 4.4E-07 61.5 23.6 160 413-600 97-256 (343)
58 TIGR00411 redox_disulf_1 small 97.5 0.00016 3.4E-09 61.7 5.6 59 17-89 6-64 (82)
59 PRK09381 trxA thioredoxin; Pro 97.5 0.00033 7.1E-09 63.3 7.4 69 10-90 18-89 (109)
60 TIGR00385 dsbE periplasmic pro 97.5 0.00044 9.6E-09 68.3 8.7 80 11-96 61-159 (173)
61 PF07944 DUF1680: Putative gly 97.4 0.0021 4.6E-08 74.5 14.5 134 419-595 63-207 (520)
62 cd02962 TMX2 TMX2 family; comp 97.4 0.00037 7.9E-09 67.7 6.8 83 4-92 36-124 (152)
63 PTZ00051 thioredoxin; Provisio 97.4 0.00037 8.1E-09 61.5 6.4 75 3-90 8-85 (98)
64 cd03004 PDI_a_ERdj5_C PDIa fam 97.3 0.00057 1.2E-08 61.1 7.0 73 6-89 11-87 (104)
65 PRK15412 thiol:disulfide inter 97.3 0.00071 1.5E-08 67.7 8.3 75 11-91 66-158 (185)
66 cd02994 PDI_a_TMX PDIa family, 97.3 0.0005 1.1E-08 61.2 6.4 72 4-88 9-83 (101)
67 cd02975 PfPDO_like_N Pyrococcu 97.3 0.00081 1.8E-08 61.8 7.7 91 6-115 15-111 (113)
68 cd02995 PDI_a_PDI_a'_C PDIa fa 97.3 0.00067 1.5E-08 60.1 7.0 65 10-86 15-84 (104)
69 cd03065 PDI_b_Calsequestrin_N 97.3 0.00065 1.4E-08 63.4 6.8 90 6-113 19-118 (120)
70 PF00085 Thioredoxin: Thioredo 97.3 0.00057 1.2E-08 60.3 6.2 74 5-90 8-85 (103)
71 PF06662 C5-epim_C: D-glucuron 97.2 0.0083 1.8E-07 60.2 14.8 46 251-298 29-74 (189)
72 cd02998 PDI_a_ERp38 PDIa famil 97.2 0.00076 1.6E-08 59.8 6.6 68 10-88 15-88 (105)
73 cd03002 PDI_a_MPD1_like PDI fa 97.2 0.00079 1.7E-08 60.5 6.8 66 10-86 15-85 (109)
74 cd03005 PDI_a_ERp46 PDIa famil 97.2 0.00091 2E-08 59.2 6.8 73 4-89 8-86 (102)
75 cd04793 LanC LanC is the cycla 97.2 0.087 1.9E-06 58.5 23.8 143 421-601 177-331 (382)
76 cd03006 PDI_a_EFP1_N PDIa fami 97.2 0.00074 1.6E-08 62.3 5.8 73 4-88 17-96 (113)
77 PTZ00443 Thioredoxin domain-co 97.1 0.0044 9.4E-08 64.0 11.6 65 13-89 52-119 (224)
78 cd02989 Phd_like_TxnDC9 Phosdu 97.1 0.0011 2.4E-08 60.9 6.5 74 4-90 13-89 (113)
79 cd03009 TryX_like_TryX_NRX Try 97.1 0.0019 4.1E-08 60.4 8.0 80 7-90 12-114 (131)
80 KOG0910 Thioredoxin-like prote 97.1 0.001 2.2E-08 63.8 5.9 77 7-98 55-138 (150)
81 COG3533 Uncharacterized protei 97.1 0.055 1.2E-06 60.8 20.1 175 205-527 83-263 (589)
82 PLN02266 endoglucanase 97.1 0.021 4.6E-07 65.6 17.5 182 228-521 89-281 (510)
83 PHA02125 thioredoxin-like prot 97.1 0.0013 2.8E-08 55.8 6.0 53 17-90 5-57 (75)
84 PRK14018 trifunctional thiored 97.1 0.0011 2.3E-08 76.3 7.1 84 11-97 54-162 (521)
85 cd02999 PDI_a_ERp44_like PDIa 97.0 0.00092 2E-08 60.0 5.2 64 10-85 15-82 (100)
86 PLN02340 endoglucanase 97.0 0.016 3.4E-07 68.0 16.6 187 228-522 73-266 (614)
87 cd03001 PDI_a_P5 PDIa family, 97.0 0.002 4.4E-08 57.1 7.4 71 4-85 8-82 (103)
88 COG4225 Predicted unsaturated 97.0 0.015 3.2E-07 62.5 14.7 152 451-611 98-253 (357)
89 PLN02171 endoglucanase 97.0 0.027 5.9E-07 66.3 18.1 84 419-522 179-267 (629)
90 PF00759 Glyco_hydro_9: Glycos 97.0 0.0027 5.8E-08 72.1 9.7 91 416-524 154-247 (444)
91 KOG0907 Thioredoxin [Posttrans 97.0 0.0013 2.8E-08 60.0 5.6 72 5-89 13-87 (106)
92 cd02973 TRX_GRX_like Thioredox 97.0 0.0015 3.3E-08 53.6 5.5 61 17-92 6-66 (67)
93 PLN03009 cellulase 96.9 0.02 4.4E-07 65.7 16.2 67 228-299 71-140 (495)
94 COG3118 Thioredoxin domain-con 96.9 0.0019 4.1E-08 68.3 7.1 87 12-116 42-132 (304)
95 PLN02308 endoglucanase 96.9 0.03 6.6E-07 64.1 17.3 84 419-520 175-262 (492)
96 TIGR02738 TrbB type-F conjugat 96.9 0.0023 5.1E-08 62.2 6.7 66 19-90 59-133 (153)
97 PLN02345 endoglucanase 96.8 0.023 5.1E-07 64.7 15.4 82 419-518 145-228 (469)
98 PTZ00470 glycoside hydrolase f 96.8 0.13 2.8E-06 59.5 21.6 291 241-609 148-466 (522)
99 cd02889 SQCY Squalene cyclase 96.8 0.068 1.5E-06 58.3 18.5 122 159-297 3-138 (348)
100 cd03026 AhpF_NTD_C TRX-GRX-lik 96.8 0.0026 5.7E-08 56.1 5.9 67 11-92 9-79 (89)
101 PTZ00102 disulphide isomerase; 96.8 0.0019 4.1E-08 73.7 6.3 68 10-88 372-444 (477)
102 PLN02420 endoglucanase 96.8 0.051 1.1E-06 62.7 17.5 189 228-521 84-277 (525)
103 PLN02909 Endoglucanase 96.8 0.058 1.3E-06 61.7 17.8 180 228-519 77-264 (486)
104 cd02952 TRP14_like Human TRX-r 96.7 0.0035 7.5E-08 58.4 6.5 69 13-89 21-103 (119)
105 cd03011 TlpA_like_ScsD_MtbDsbE 96.7 0.0015 3.3E-08 60.0 4.1 85 6-97 13-115 (123)
106 cd02992 PDI_a_QSOX PDIa family 96.7 0.0025 5.3E-08 58.7 5.5 74 5-89 10-92 (114)
107 cd02964 TryX_like_family Trypa 96.7 0.0055 1.2E-07 57.5 7.7 84 4-90 8-114 (132)
108 PLN00119 endoglucanase 96.7 0.051 1.1E-06 62.2 16.4 84 419-519 180-264 (489)
109 PLN02613 endoglucanase 96.6 0.049 1.1E-06 62.6 16.0 82 416-519 172-256 (498)
110 cd03010 TlpA_like_DsbE TlpA-li 96.6 0.005 1.1E-07 57.1 6.7 86 6-97 18-123 (127)
111 cd02967 mauD Methylamine utili 96.6 0.0078 1.7E-07 54.5 7.6 77 12-92 20-112 (114)
112 cd02965 HyaE HyaE family; HyaE 96.6 0.0044 9.5E-08 57.0 5.7 70 10-91 25-98 (111)
113 KOG2787 Lanthionine synthetase 96.5 0.011 2.4E-07 62.8 9.0 77 421-527 285-361 (403)
114 cd04794 euk_LANCL eukaryotic L 96.5 0.26 5.7E-06 54.0 20.1 137 421-600 170-307 (343)
115 TIGR01577 oligosac_amyl oligos 96.4 2.8 6E-05 49.9 29.6 58 230-288 331-393 (616)
116 TIGR01130 ER_PDI_fam protein d 96.3 0.0081 1.8E-07 67.8 7.0 74 3-88 8-87 (462)
117 PTZ00102 disulphide isomerase; 96.2 0.0077 1.7E-07 68.7 6.7 72 4-86 40-117 (477)
118 cd03008 TryX_like_RdCVF Trypar 96.2 0.012 2.7E-07 56.7 6.9 76 10-91 22-128 (146)
119 cd04434 LanC_like LanC-like pr 96.2 1.3 2.9E-05 47.5 23.3 133 421-595 164-298 (343)
120 PTZ00470 glycoside hydrolase f 96.2 0.03 6.5E-07 64.7 10.9 101 492-597 155-256 (522)
121 cd04792 LanM-like LanM-like pr 96.1 5.3 0.00011 49.2 37.5 136 421-601 648-785 (825)
122 TIGR00412 redox_disulf_2 small 96.1 0.0097 2.1E-07 50.7 5.1 61 19-97 7-67 (76)
123 cd02957 Phd_like Phosducin (Ph 96.1 0.015 3.3E-07 53.1 6.8 64 14-91 25-91 (113)
124 TIGR01626 ytfJ_HI0045 conserve 96.0 0.026 5.7E-07 56.5 8.5 84 9-98 55-170 (184)
125 TIGR02740 TraF-like TraF-like 96.0 0.02 4.3E-07 61.0 8.0 73 12-89 165-243 (271)
126 TIGR02187 GlrX_arch Glutaredox 96.0 0.014 3.1E-07 59.7 6.6 66 11-89 130-199 (215)
127 PF06917 Pectate_lyase_2: Peri 95.9 3 6.5E-05 47.4 24.4 129 451-598 327-472 (557)
128 TIGR02187 GlrX_arch Glutaredox 95.9 0.015 3.4E-07 59.4 6.2 58 20-89 32-90 (215)
129 PLN02309 5'-adenylylsulfate re 95.8 0.025 5.4E-07 64.3 8.3 68 9-86 361-433 (457)
130 PLN02175 endoglucanase 95.8 0.24 5.3E-06 56.7 15.7 83 419-519 172-258 (484)
131 PRK13728 conjugal transfer pro 95.8 0.032 6.9E-07 55.7 7.7 65 19-89 78-150 (181)
132 PRK03147 thiol-disulfide oxido 95.7 0.024 5.3E-07 55.2 6.7 98 7-113 55-171 (173)
133 cd02982 PDI_b'_family Protein 95.7 0.017 3.7E-07 51.2 5.1 65 13-88 12-82 (103)
134 cd02990 UAS_FAF1 UAS family, F 95.7 0.058 1.3E-06 51.4 8.8 87 3-89 7-110 (136)
135 COG4403 LcnDR2 Lantibiotic mod 95.6 1 2.2E-05 54.2 20.4 222 207-530 596-831 (963)
136 PF14595 Thioredoxin_9: Thiore 95.6 0.0046 9.9E-08 58.4 1.1 63 17-90 48-112 (129)
137 PF01532 Glyco_hydro_47: Glyco 95.6 0.81 1.8E-05 52.3 19.4 298 207-578 98-432 (452)
138 cd01659 TRX_superfamily Thiore 95.6 0.02 4.3E-07 44.0 4.4 60 17-85 4-63 (69)
139 KOG1752 Glutaredoxin and relat 95.5 0.029 6.2E-07 51.0 5.9 70 6-89 7-78 (104)
140 TIGR00424 APS_reduc 5'-adenyly 95.4 0.037 8E-07 63.0 7.8 66 10-86 368-439 (463)
141 cd02966 TlpA_like_family TlpA- 95.4 0.038 8.3E-07 48.7 6.4 82 6-90 12-112 (116)
142 cd02987 Phd_like_Phd Phosducin 95.4 0.06 1.3E-06 53.5 8.1 63 14-90 84-149 (175)
143 PF05147 LANC_like: Lanthionin 95.4 0.028 6E-07 61.1 6.3 249 251-597 7-262 (355)
144 TIGR02180 GRX_euk Glutaredoxin 95.3 0.062 1.3E-06 45.7 7.0 63 16-89 3-65 (84)
145 PLN02919 haloacid dehalogenase 95.2 0.042 9.2E-07 69.0 8.0 95 12-118 419-540 (1057)
146 cd04794 euk_LANCL eukaryotic L 95.1 0.38 8.1E-06 52.8 14.2 78 422-529 230-307 (343)
147 PRK11509 hydrogenase-1 operon 95.1 0.041 8.8E-07 52.2 5.5 53 36-97 59-113 (132)
148 PF01532 Glyco_hydro_47: Glyco 95.0 0.19 4E-06 57.5 11.7 167 414-604 75-252 (452)
149 PF13905 Thioredoxin_8: Thiore 94.8 0.061 1.3E-06 47.0 5.8 73 13-88 1-95 (95)
150 cd04793 LanC LanC is the cycla 94.7 1.9 4.1E-05 47.9 18.6 82 421-529 249-330 (382)
151 KOG2507 Ubiquitin regulatory p 94.6 0.16 3.5E-06 55.9 9.2 102 4-119 10-113 (506)
152 cd02896 complement_C3_C4_C5 Pr 94.5 3.2 6.8E-05 44.7 19.2 77 207-297 48-124 (297)
153 TIGR02189 GlrX-like_plant Glut 94.4 0.11 2.3E-06 46.8 6.3 67 9-89 4-72 (99)
154 cd03012 TlpA_like_DipZ_like Tl 94.4 0.071 1.5E-06 49.5 5.4 21 71-91 101-121 (126)
155 TIGR02196 GlrX_YruB Glutaredox 94.2 0.13 2.8E-06 42.0 6.0 58 16-89 4-61 (74)
156 PF08534 Redoxin: Redoxin; In 94.0 0.14 3E-06 48.6 6.5 87 7-96 22-136 (146)
157 COG4833 Predicted glycosyl hyd 94.0 0.6 1.3E-05 48.9 11.3 156 399-578 110-283 (377)
158 KOG0908 Thioredoxin-like prote 93.9 0.074 1.6E-06 55.0 4.6 67 8-89 16-87 (288)
159 cd03419 GRX_GRXh_1_2_like Glut 93.9 0.22 4.7E-06 42.2 6.9 59 18-89 6-64 (82)
160 PF06917 Pectate_lyase_2: Peri 93.8 0.24 5.1E-06 55.9 8.7 271 215-540 159-482 (557)
161 PHA03050 glutaredoxin; Provisi 93.6 0.19 4.2E-06 45.9 6.6 78 1-89 1-80 (108)
162 cd02892 SQCY_1 Squalene cyclas 93.4 22 0.00047 42.6 26.9 60 230-297 359-421 (634)
163 TIGR02661 MauD methylamine deh 93.3 0.22 4.7E-06 50.0 7.0 75 12-91 73-162 (189)
164 TIGR02200 GlrX_actino Glutared 93.3 0.13 2.9E-06 42.7 4.6 60 16-90 4-64 (77)
165 cd02892 SQCY_1 Squalene cyclas 93.3 16 0.00034 43.8 23.6 114 153-293 234-348 (634)
166 TIGR01507 hopene_cyclase squal 93.2 24 0.00052 42.3 25.6 60 230-297 365-424 (635)
167 TIGR01130 ER_PDI_fam protein d 93.1 0.17 3.7E-06 57.1 6.6 65 10-87 361-431 (462)
168 COG3533 Uncharacterized protei 93.0 1.5 3.2E-05 49.8 13.3 116 451-593 85-208 (589)
169 TIGR02190 GlrX-dom Glutaredoxi 92.8 0.2 4.4E-06 42.7 5.1 64 9-89 4-68 (79)
170 TIGR00365 monothiol glutaredox 92.7 0.25 5.3E-06 44.2 5.6 70 4-89 3-78 (97)
171 TIGR01577 oligosac_amyl oligos 92.2 3.3 7.1E-05 49.3 15.9 135 454-598 313-456 (616)
172 cd03017 PRX_BCP Peroxiredoxin 92.0 0.51 1.1E-05 44.1 7.3 21 77-97 111-132 (140)
173 PRK10638 glutaredoxin 3; Provi 91.8 0.28 6.1E-06 42.2 4.8 57 17-89 7-63 (83)
174 cd02976 NrdH NrdH-redoxin (Nrd 91.8 0.52 1.1E-05 38.3 6.2 59 16-90 4-62 (73)
175 TIGR02194 GlrX_NrdH Glutaredox 91.6 0.32 7E-06 40.6 4.9 51 16-81 3-54 (72)
176 PTZ00062 glutaredoxin; Provisi 91.5 0.48 1E-05 48.3 6.8 67 4-91 7-77 (204)
177 PTZ00056 glutathione peroxidas 91.3 0.66 1.4E-05 47.1 7.6 13 78-90 147-159 (199)
178 KOG2204 Mannosyl-oligosacchari 91.2 6 0.00013 45.5 15.5 290 253-609 263-572 (625)
179 PLN02399 phospholipid hydroper 91.2 0.66 1.4E-05 48.4 7.6 16 76-91 201-216 (236)
180 cd02969 PRX_like1 Peroxiredoxi 91.1 1.5 3.3E-05 42.8 9.8 24 70-93 104-127 (171)
181 PLN03009 cellulase 90.9 37 0.0008 39.5 22.3 111 171-286 72-213 (495)
182 cd02066 GRX_family Glutaredoxi 90.9 0.8 1.7E-05 36.9 6.4 58 17-90 5-62 (72)
183 PRK11657 dsbG disulfide isomer 90.8 0.64 1.4E-05 48.9 7.2 28 71-98 215-242 (251)
184 PRK09437 bcp thioredoxin-depen 90.3 1.2 2.7E-05 42.6 8.1 22 77-98 121-143 (154)
185 cd03027 GRX_DEP Glutaredoxin ( 90.1 0.47 1E-05 39.6 4.5 57 17-89 6-62 (73)
186 cd03028 GRX_PICOT_like Glutare 89.9 0.63 1.4E-05 40.8 5.2 65 8-89 3-74 (90)
187 COG4403 LcnDR2 Lantibiotic mod 89.5 12 0.00027 45.4 16.8 140 412-601 690-831 (963)
188 cd02889 SQCY Squalene cyclase 89.3 12 0.00026 40.7 16.0 141 452-599 43-204 (348)
189 PF05147 LANC_like: Lanthionin 88.9 2.9 6.4E-05 45.3 10.7 134 419-595 170-306 (355)
190 PF00462 Glutaredoxin: Glutare 88.8 1.2 2.5E-05 35.7 5.7 51 17-81 4-55 (60)
191 TIGR02181 GRX_bact Glutaredoxi 88.7 0.56 1.2E-05 39.7 4.0 58 16-89 3-60 (79)
192 PF06202 GDE_C: Amylo-alpha-1, 88.5 42 0.00091 37.4 19.7 113 187-302 90-224 (370)
193 PLN03012 Camelliol C synthase 88.4 34 0.00074 41.7 19.9 59 231-297 471-534 (759)
194 TIGR02474 pec_lyase pectate ly 88.2 0.61 1.3E-05 49.9 4.6 39 257-296 49-87 (290)
195 TIGR02540 gpx7 putative glutat 88.1 1.9 4.2E-05 41.3 7.8 19 73-91 113-135 (153)
196 TIGR01535 glucan_glucosid gluc 88.1 48 0.001 39.8 20.7 125 453-595 312-442 (648)
197 PRK11200 grxA glutaredoxin 1; 87.9 1.2 2.7E-05 38.3 5.7 62 17-89 6-69 (85)
198 PLN02340 endoglucanase 87.9 67 0.0015 38.3 21.8 110 171-286 74-216 (614)
199 PRK15317 alkyl hydroperoxide r 87.7 0.98 2.1E-05 52.5 6.4 75 3-92 105-183 (517)
200 cd03418 GRX_GRXb_1_3_like Glut 87.6 1.1 2.3E-05 37.3 4.9 58 16-89 4-62 (75)
201 PLN02993 lupeol synthase 87.5 6.5 0.00014 47.7 13.1 83 208-297 513-611 (763)
202 KOG2429 Glycosyl hydrolase, fa 87.3 7.9 0.00017 44.6 12.8 40 496-537 375-414 (622)
203 PRK12759 bifunctional gluaredo 87.1 0.83 1.8E-05 51.6 5.2 61 16-89 4-71 (410)
204 cd03007 PDI_a_ERp29_N PDIa fam 87.0 0.73 1.6E-05 42.8 3.8 65 5-84 10-89 (116)
205 PF13728 TraF: F plasmid trans 87.0 1.6 3.5E-05 44.9 6.8 79 5-90 114-198 (215)
206 PRK10329 glutaredoxin-like pro 86.9 0.95 2.1E-05 39.1 4.3 51 17-81 6-56 (81)
207 TIGR03463 osq_cycl 2,3-oxidosq 86.7 80 0.0017 37.9 26.6 61 229-297 357-421 (634)
208 PF05592 Bac_rhamnosid: Bacter 86.3 14 0.0003 42.8 14.8 117 409-537 197-327 (509)
209 PTZ00256 glutathione peroxidas 85.9 2.6 5.6E-05 42.0 7.5 19 73-91 142-163 (183)
210 KOG0191 Thioredoxin/protein di 85.9 1.1 2.4E-05 49.9 5.4 59 19-89 56-115 (383)
211 cd03014 PRX_Atyp2cys Peroxired 85.8 1.4 3.1E-05 41.5 5.3 31 76-110 110-141 (143)
212 TIGR03143 AhpF_homolog putativ 85.7 1.4 3.1E-05 51.7 6.3 74 4-92 466-543 (555)
213 PF06110 DUF953: Eukaryotic pr 85.7 0.5 1.1E-05 44.1 2.1 76 4-87 10-101 (119)
214 TIGR01507 hopene_cyclase squal 85.6 54 0.0012 39.4 19.5 127 155-298 336-493 (635)
215 cd00688 ISOPREN_C2_like This g 85.3 47 0.001 34.0 21.0 78 208-298 49-126 (300)
216 PF06202 GDE_C: Amylo-alpha-1, 84.7 27 0.00058 38.9 15.5 141 455-599 50-209 (370)
217 TIGR02183 GRXA Glutaredoxin, G 84.7 1.8 3.9E-05 37.6 5.0 62 17-89 5-68 (86)
218 TIGR01787 squalene_cyclas squa 84.7 97 0.0021 37.1 21.3 28 269-297 382-409 (621)
219 PRK11097 endo-1,4-D-glucanase; 84.7 14 0.00031 41.2 13.1 131 458-597 74-213 (376)
220 KOG2431 1, 2-alpha-mannosidase 84.6 6.1 0.00013 44.0 9.9 123 456-598 151-276 (546)
221 cd02968 SCO SCO (an acronym fo 84.6 1.4 3.1E-05 41.1 4.7 20 10-29 19-42 (142)
222 PRK13703 conjugal pilus assemb 84.4 2.2 4.8E-05 44.8 6.3 80 4-89 136-220 (248)
223 PF07678 A2M_comp: A-macroglob 84.1 20 0.00044 37.4 13.5 62 226-297 9-70 (246)
224 PRK10877 protein disulfide iso 83.9 2.7 5.8E-05 43.7 6.8 32 71-112 198-229 (232)
225 TIGR02739 TraF type-F conjugat 83.1 4.3 9.2E-05 42.9 7.9 79 4-89 143-227 (256)
226 KOG2431 1, 2-alpha-mannosidase 82.9 89 0.0019 35.3 18.4 298 239-610 166-490 (546)
227 TIGR03140 AhpF alkyl hydropero 82.8 2.5 5.5E-05 49.0 6.7 75 3-92 106-184 (515)
228 cd03015 PRX_Typ2cys Peroxiredo 82.6 6.4 0.00014 38.6 8.6 18 75-92 119-136 (173)
229 PF09492 Pec_lyase: Pectic aci 82.5 1.5 3.2E-05 47.1 4.2 47 249-296 33-82 (289)
230 PF00578 AhpC-TSA: AhpC/TSA fa 82.2 2.1 4.6E-05 38.8 4.7 16 12-27 24-43 (124)
231 cd03029 GRX_hybridPRX5 Glutare 82.1 3.2 7E-05 34.3 5.4 56 17-89 6-61 (72)
232 PRK13190 putative peroxiredoxi 82.0 3.8 8.1E-05 41.6 6.8 36 75-114 116-151 (202)
233 PLN02308 endoglucanase 81.5 1.1E+02 0.0024 35.5 20.6 111 171-286 72-212 (492)
234 TIGR02474 pec_lyase pectate ly 80.7 69 0.0015 34.6 16.0 118 398-537 30-157 (290)
235 TIGR03463 osq_cycl 2,3-oxidosq 80.3 35 0.00077 40.9 15.2 157 419-598 310-489 (634)
236 KOG4277 Uncharacterized conser 80.1 1.8 3.8E-05 46.1 3.7 61 19-90 52-115 (468)
237 TIGR03137 AhpC peroxiredoxin. 79.7 10 0.00022 37.8 9.0 34 75-113 118-152 (187)
238 PRK10382 alkyl hydroperoxide r 79.6 11 0.00023 37.9 9.1 36 74-113 115-152 (187)
239 KOG2501 Thioredoxin, nucleored 78.8 7.3 0.00016 38.0 7.2 77 11-90 31-130 (157)
240 TIGR01787 squalene_cyclas squa 78.5 13 0.00027 44.5 10.7 118 153-296 386-529 (621)
241 cd00340 GSH_Peroxidase Glutath 77.8 2.4 5.3E-05 40.6 3.7 14 78-91 125-138 (152)
242 COG4833 Predicted glycosyl hyd 77.7 4.7 0.0001 42.4 5.8 90 417-538 47-138 (377)
243 cd02890 PTase Protein prenyltr 77.5 28 0.00061 36.9 12.1 122 153-297 45-167 (286)
244 KOG0190 Protein disulfide isom 77.4 2.3 5.1E-05 48.7 3.9 69 8-88 37-111 (493)
245 PRK10137 alpha-glucosidase; Pr 77.2 1.9E+02 0.0041 35.6 21.1 46 495-540 582-634 (786)
246 cd02894 GGTase-II Geranylgeran 77.2 1.1E+02 0.0023 32.7 20.3 69 457-540 198-268 (287)
247 COG0695 GrxC Glutaredoxin and 76.9 4.5 9.8E-05 34.8 4.7 59 17-89 6-64 (80)
248 PF13192 Thioredoxin_3: Thiore 76.4 3 6.5E-05 35.2 3.5 59 18-93 6-64 (76)
249 KOG2430 Glycosyl hydrolase, fa 76.3 20 0.00043 38.9 10.1 80 206-287 134-220 (587)
250 cd02988 Phd_like_VIAF Phosduci 75.8 5.6 0.00012 40.2 5.8 62 13-90 102-166 (192)
251 TIGR01561 gde_arch glycogen de 75.5 64 0.0014 38.2 15.2 111 416-539 348-479 (575)
252 PRK10824 glutaredoxin-4; Provi 74.9 9 0.00019 35.5 6.4 26 4-29 6-37 (115)
253 KOG2204 Mannosyl-oligosacchari 74.2 4.8 0.0001 46.3 5.2 95 492-596 262-363 (625)
254 PRK00522 tpx lipid hydroperoxi 73.8 9.5 0.00021 37.3 6.8 33 78-113 133-165 (167)
255 PTZ00062 glutaredoxin; Provisi 73.8 7 0.00015 39.9 5.9 67 6-89 106-179 (204)
256 cd00688 ISOPREN_C2_like This g 73.7 45 0.00097 34.2 12.3 128 153-295 50-179 (300)
257 PRK15000 peroxidase; Provision 73.0 17 0.00038 36.8 8.6 35 75-114 124-159 (200)
258 cd03018 PRX_AhpE_like Peroxire 72.1 14 0.00031 34.6 7.4 15 77-91 115-129 (149)
259 TIGR01535 glucan_glucosid gluc 69.8 2.6E+02 0.0056 33.8 24.4 160 106-288 209-386 (648)
260 KOG0190 Protein disulfide isom 69.0 5.6 0.00012 45.7 4.4 68 6-86 377-449 (493)
261 PLN02412 probable glutathione 67.9 31 0.00067 33.7 8.9 18 74-91 129-146 (167)
262 KOG2430 Glycosyl hydrolase, fa 67.9 76 0.0017 34.6 12.1 96 413-527 182-283 (587)
263 PF01270 Glyco_hydro_8: Glycos 67.6 19 0.0004 39.8 8.0 97 419-534 116-216 (342)
264 PF05592 Bac_rhamnosid: Bacter 66.5 1.3E+02 0.0029 34.6 15.2 198 376-600 109-319 (509)
265 KOG0366 Protein geranylgeranyl 66.1 1.9E+02 0.0041 30.9 15.2 72 458-542 213-284 (329)
266 KOG2787 Lanthionine synthetase 65.2 63 0.0014 35.3 10.8 106 451-593 241-356 (403)
267 PRK13599 putative peroxiredoxi 64.5 17 0.00037 37.3 6.6 38 75-116 118-155 (215)
268 PLN02266 endoglucanase 64.2 2.3E+02 0.0049 33.2 16.2 125 451-592 130-281 (510)
269 PLN02345 endoglucanase 63.7 2.5E+02 0.0054 32.5 16.2 118 451-589 82-228 (469)
270 cd02897 A2M_2 Proteins similar 62.8 26 0.00055 37.4 7.8 77 208-296 46-122 (292)
271 COG0526 TrxA Thiol-disulfide i 62.0 19 0.00042 30.5 5.7 56 13-80 32-94 (127)
272 PF01270 Glyco_hydro_8: Glycos 61.6 1.1E+02 0.0024 33.7 12.7 126 458-599 75-211 (342)
273 PRK11097 endo-1,4-D-glucanase; 61.3 71 0.0015 35.8 11.0 105 408-528 108-215 (376)
274 PF01204 Trehalase: Trehalase; 60.7 1.7E+02 0.0037 34.2 14.5 55 413-479 305-362 (512)
275 PF13249 Prenyltrans_2: Prenyl 59.7 24 0.00052 31.3 6.0 21 274-295 91-111 (113)
276 KOG0191 Thioredoxin/protein di 59.7 7 0.00015 43.6 2.9 62 15-87 166-230 (383)
277 PLN00119 endoglucanase 59.4 3.2E+02 0.007 31.8 16.2 116 451-590 117-264 (489)
278 KOG3425 Uncharacterized conser 59.2 18 0.0004 33.7 4.9 50 2-57 11-77 (128)
279 PRK13270 treF trehalase; Provi 59.1 3.3E+02 0.0072 32.2 16.4 128 414-573 348-481 (549)
280 PLN02171 endoglucanase 58.7 3.9E+02 0.0084 32.2 17.1 122 451-593 116-267 (629)
281 COG3408 GDB1 Glycogen debranch 58.7 76 0.0016 38.2 11.4 100 451-552 362-483 (641)
282 cd02971 PRX_family Peroxiredox 58.6 17 0.00036 33.6 4.9 19 12-30 21-43 (140)
283 PF05426 Alginate_lyase: Algin 58.3 2.4E+02 0.0052 29.4 14.6 36 247-282 51-86 (272)
284 PF02966 DIM1: Mitosis protein 56.6 52 0.0011 31.3 7.6 68 11-90 18-88 (133)
285 cd03016 PRX_1cys Peroxiredoxin 56.3 42 0.00092 33.9 7.7 35 76-114 117-151 (203)
286 PRK13271 treA trehalase; Provi 54.8 3.8E+02 0.0083 31.8 16.1 104 413-540 337-444 (569)
287 PF03200 Glyco_hydro_63: Manno 54.7 1.3E+02 0.0028 37.3 12.7 54 414-479 560-613 (801)
288 PF00759 Glyco_hydro_9: Glycos 53.0 3.6E+02 0.0077 30.5 15.4 127 451-595 94-247 (444)
289 PTZ00253 tryparedoxin peroxida 52.8 34 0.00074 34.4 6.3 17 76-92 127-143 (199)
290 PTZ00137 2-Cys peroxiredoxin; 51.9 90 0.002 33.2 9.5 34 75-113 187-221 (261)
291 PRK13191 putative peroxiredoxi 51.5 44 0.00096 34.3 7.0 37 75-115 123-159 (215)
292 PF09492 Pec_lyase: Pectic aci 50.9 59 0.0013 35.1 8.0 84 406-511 33-119 (289)
293 TIGR01561 gde_arch glycogen de 49.4 3.3E+02 0.0072 32.4 14.5 138 455-599 313-468 (575)
294 cd03051 GST_N_GTT2_like GST_N 47.9 63 0.0014 26.0 6.2 62 16-90 3-64 (74)
295 PLN03012 Camelliol C synthase 47.5 1.5E+02 0.0032 36.4 11.4 125 153-298 511-661 (759)
296 PF04545 Sigma70_r4: Sigma-70, 47.0 31 0.00067 26.5 3.9 29 371-399 22-50 (50)
297 PF04685 DUF608: Protein of un 46.5 71 0.0015 35.6 8.1 108 413-538 96-217 (365)
298 cd03040 GST_N_mPGES2 GST_N fam 45.5 36 0.00078 28.2 4.4 59 16-90 4-63 (77)
299 PF04685 DUF608: Protein of un 45.5 73 0.0016 35.5 8.0 40 247-286 94-137 (365)
300 KOG3760 Heparan sulfate-glucur 43.8 1.3E+02 0.0029 33.6 9.2 143 417-594 418-585 (594)
301 PF04967 HTH_10: HTH DNA bindi 43.7 36 0.00079 27.1 3.8 30 369-398 23-52 (53)
302 COG3387 SGA1 Glucoamylase and 43.1 6.6E+02 0.014 30.1 19.1 70 451-525 443-512 (612)
303 PF13243 Prenyltrans_1: Prenyl 42.6 6.2 0.00013 35.2 -0.8 39 257-296 28-66 (109)
304 cd02972 DsbA_family DsbA famil 42.4 73 0.0016 26.6 6.0 16 17-32 4-19 (98)
305 PRK13189 peroxiredoxin; Provis 41.8 74 0.0016 32.8 6.9 37 75-115 125-161 (222)
306 cd03060 GST_N_Omega_like GST_N 40.5 1.1E+02 0.0023 24.9 6.5 58 17-90 4-61 (71)
307 PLN02613 endoglucanase 39.6 6.8E+02 0.015 29.3 16.4 119 451-591 112-257 (498)
308 PRK13271 treA trehalase; Provi 39.6 77 0.0017 37.5 7.3 42 500-541 351-396 (569)
309 PLN02993 lupeol synthase 39.5 1.8E+02 0.0038 35.8 10.4 155 419-597 422-601 (763)
310 TIGR02393 RpoD_Cterm RNA polym 38.9 58 0.0013 33.7 5.6 46 332-399 181-226 (238)
311 PF07678 A2M_comp: A-macroglob 38.3 1.9E+02 0.004 30.2 9.4 116 154-300 112-233 (246)
312 PRK10137 alpha-glucosidase; Pr 37.0 5.2E+02 0.011 32.0 13.8 52 415-478 581-632 (786)
313 PLN02909 Endoglucanase 37.0 7.3E+02 0.016 28.9 16.7 141 418-590 95-264 (486)
314 PRK05901 RNA polymerase sigma 36.8 58 0.0013 38.0 5.7 47 332-400 452-498 (509)
315 cd02896 complement_C3_C4_C5 Pr 36.8 3.1E+02 0.0068 29.4 11.0 24 276-300 263-286 (297)
316 cd03031 GRX_GRX_like Glutaredo 36.4 48 0.001 32.1 4.2 39 21-73 15-54 (147)
317 cd02970 PRX_like2 Peroxiredoxi 35.5 76 0.0017 29.4 5.4 59 20-89 34-93 (149)
318 PF08281 Sigma70_r4_2: Sigma-7 34.6 52 0.0011 25.5 3.5 27 371-397 28-54 (54)
319 PRK07921 RNA polymerase sigma 34.4 1E+02 0.0023 33.7 6.9 54 325-400 256-313 (324)
320 cd00570 GST_N_family Glutathio 34.3 1.2E+02 0.0025 23.3 5.6 59 16-90 3-61 (71)
321 cd02970 PRX_like2 Peroxiredoxi 34.3 59 0.0013 30.2 4.4 17 75-91 129-145 (149)
322 PRK05949 RNA polymerase sigma 34.1 1.1E+02 0.0023 33.7 7.0 46 332-399 271-316 (327)
323 PF13417 GST_N_3: Glutathione 33.0 1.5E+02 0.0032 24.5 6.2 57 17-90 2-58 (75)
324 PLN02710 farnesyltranstransfer 33.0 3.9E+02 0.0085 30.7 11.3 22 276-298 192-213 (439)
325 PRK13272 treA trehalase; Provi 32.5 7.6E+02 0.017 29.2 13.8 99 416-539 341-443 (542)
326 PRK07405 RNA polymerase sigma 32.3 1.2E+02 0.0025 33.1 6.9 46 332-399 261-306 (317)
327 PF03200 Glyco_hydro_63: Manno 31.3 3.9E+02 0.0084 33.2 11.7 50 495-544 565-618 (801)
328 PRK07598 RNA polymerase sigma 31.0 1E+02 0.0023 35.0 6.3 55 324-400 343-401 (415)
329 TIGR02997 Sig70-cyanoRpoD RNA 30.7 1E+02 0.0022 33.1 6.1 52 325-398 243-298 (298)
330 COG3408 GDB1 Glycogen debranch 30.1 4.5E+02 0.0097 31.7 11.7 140 455-600 303-462 (641)
331 TIGR02957 SigX4 RNA polymerase 29.4 1.1E+02 0.0024 32.5 6.0 53 371-430 126-178 (281)
332 cd03023 DsbA_Com1_like DsbA fa 28.7 46 0.00099 30.9 2.7 12 19-30 14-25 (154)
333 PRK05658 RNA polymerase sigma 28.1 74 0.0016 38.0 4.8 65 324-410 549-618 (619)
334 PRK09210 RNA polymerase sigma 27.9 1.4E+02 0.0031 33.2 6.8 55 324-400 298-356 (367)
335 PF01204 Trehalase: Trehalase; 27.7 90 0.0019 36.5 5.3 43 498-540 317-363 (512)
336 KOG3760 Heparan sulfate-glucur 27.4 6.9E+02 0.015 28.2 11.4 57 468-524 528-586 (594)
337 PF03792 PBC: PBC domain; Int 27.1 4.5E+02 0.0099 26.6 9.3 129 24-169 34-168 (191)
338 PLN02567 alpha,alpha-trehalase 26.5 1.1E+03 0.025 27.8 15.0 103 415-530 328-441 (554)
339 PF13249 Prenyltrans_2: Prenyl 26.1 1.1E+02 0.0024 27.0 4.5 46 248-299 20-65 (113)
340 cd02891 A2M_like Proteins simi 26.0 2.6E+02 0.0057 29.1 8.1 77 208-297 46-122 (282)
341 PF02011 Glyco_hydro_48: Glyco 24.6 1.2E+03 0.027 27.6 13.2 131 232-473 388-529 (619)
342 COG3413 Predicted DNA binding 24.3 92 0.002 31.8 4.1 31 369-399 178-208 (215)
343 PRK09636 RNA polymerase sigma 24.1 1.7E+02 0.0036 31.3 6.3 53 371-430 133-185 (293)
344 PLN02420 endoglucanase 23.7 1.2E+03 0.027 27.3 17.3 146 419-593 103-278 (525)
345 PRK09635 sigI RNA polymerase s 23.6 1.6E+02 0.0034 31.7 5.9 53 371-430 136-188 (290)
346 KOG3414 Component of the U4/U6 22.7 1.3E+02 0.0029 28.5 4.3 60 12-83 22-85 (142)
347 KOG2429 Glycosyl hydrolase, fa 22.6 1.3E+03 0.029 27.3 13.5 213 204-509 212-445 (622)
348 PRK08241 RNA polymerase factor 22.4 2.1E+02 0.0046 31.0 6.7 55 371-429 171-227 (339)
349 cd03019 DsbA_DsbA DsbA family, 22.1 52 0.0011 31.7 1.8 14 19-32 24-37 (178)
350 PRK07406 RNA polymerase sigma 21.9 2.2E+02 0.0047 32.0 6.7 30 371-400 333-362 (373)
351 PF00432 Prenyltrans: Prenyltr 21.9 85 0.0019 23.5 2.5 26 157-183 3-28 (44)
352 COG5029 CAL1 Prenyltransferase 21.6 8.3E+02 0.018 26.9 10.6 76 457-545 225-300 (342)
353 PF07319 DnaI_N: Primosomal pr 21.4 47 0.001 29.5 1.1 20 26-45 22-41 (94)
354 cd02894 GGTase-II Geranylgeran 21.4 5.5E+02 0.012 27.3 9.5 27 269-296 239-265 (287)
355 COG0568 RpoD DNA-directed RNA 21.1 2.3E+02 0.0051 31.3 6.6 45 332-398 284-328 (342)
356 KOG0911 Glutaredoxin-related p 20.2 60 0.0013 33.6 1.8 59 12-82 16-77 (227)
357 cd02897 A2M_2 Proteins similar 20.2 8.1E+02 0.018 25.9 10.6 70 211-289 102-174 (292)
No 1
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-169 Score=1409.38 Aligned_cols=631 Identities=42% Similarity=0.715 Sum_probs=589.8
Q ss_pred chhHHhhhhhcCCcE---EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 2 GRRSFCGGTKTRRTH---FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 2 ~~~a~~~Ak~e~K~i---i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
|++|+++|++|+||| |||+||||||||++|||+||+||++||++|||||||||||||||++||++||+|+|+||||+
T Consensus 32 ~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 32 GEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred CHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 789999999999999 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeecccccCCCCCCCcccHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHH
Q 005023 79 SVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALR 158 (718)
Q Consensus 79 ~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~~~w~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 158 (718)
||||||||+|||++||||+++++|+|||+++|++|.+.|+++|++++++|+.+.+.++....+. .+..++.+.++
T Consensus 112 tVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~W~edr~~~~~~a~~~~~~l~~~~~~~-----~~~~l~~~~l~ 186 (667)
T COG1331 112 TVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRETWREDREELLQSAERVLEALEGLARPS-----AGEELDEEVLD 186 (667)
T ss_pred eEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCC-----ccccCChHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998755221 12346778899
Q ss_pred HHHHHHHhcccccCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEec
Q 005023 159 LCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV 238 (718)
Q Consensus 159 ~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsv 238 (718)
+++.++.+.||++|||||++||||+|+.+.|||+++.+++ ++++++|+.+||++|+.||||||||||||||||
T Consensus 187 ~~~~~l~~~~D~~~GGfg~~pKFP~~~~l~~Llr~~~~~~-------d~~~~~~~~~TL~~ma~GGIyDhlgGGF~RYSt 259 (667)
T COG1331 187 RAAEALARSFDREYGGFGSAPKFPPPHLLLFLLRYSLRTG-------DERALDMVLRTLDAMARGGIYDHLGGGFFRYST 259 (667)
T ss_pred HHHHHHHHhcchhhCCcCCCCCCCChHHHHHHHHHHHhhC-------CHHHHHHHHHHHHHHHccCCccccCCceeeeec
Confidence 9999999999999999999999999999999999998753 589999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceE
Q 005023 239 DERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFY 318 (718)
Q Consensus 239 D~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~DADs~~~~~~~~~~EG~yY 318 (718)
|++|.||||||||||||+|+.+|++||++|||++|+++|++|++||+|+|++|+||||+|+||||+ ++||+||
T Consensus 260 D~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~-------g~EG~~Y 332 (667)
T COG1331 260 DREWLVPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSD-------GEEGKYY 332 (667)
T ss_pred CCceechhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCc-------ccCCCee
Confidence 999999999999999999999999999999999999999999999999999999999999999994 6999999
Q ss_pred eechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005023 319 VWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 398 (718)
Q Consensus 319 ~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~ 398 (718)
+||.+||+++||+++++||++|+|+++|| |+|+||||+..+.++ + +++..+.++.+|+||+
T Consensus 333 ~Ws~eEi~~~Lg~d~~~~~~~f~vs~~Gn------------feGrnvL~~~~~~~~-~------~~~~~~~l~~~r~kL~ 393 (667)
T COG1331 333 TWSVEELKEVLGEDAELACKYFDVSEEGN------------FEGRNVLHVPGPLEE-A------IEEAEEKLERAREKLL 393 (667)
T ss_pred ecCHHHHHHHhcccHHHHHHHcccCCCCC------------cCCceeecccCchhh-h------hhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999 789999999988776 2 7889999999999999
Q ss_pred hhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE
Q 005023 399 DVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH 478 (718)
Q Consensus 399 ~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~ 478 (718)
.+|++|++|++||||||+||||||.||++|++++++ ++|++.|+++++||.+++++ ++|.|
T Consensus 394 ~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~~~d----------------~~~l~~A~~~~~fi~~~l~~---~rl~~ 454 (667)
T COG1331 394 AAREKRKQPSRDDKVLTDWNGLMIAALAEAGRVLGD----------------PEYLEAAERAADFILDNLYV---DRLLR 454 (667)
T ss_pred HHHHhCCCCCCCcceeeccHHHHHHHHHHHHHHcCC----------------hHHHHHHHHHHHHHHHhhcc---cchhe
Confidence 999999999999999999999999999999999998 89999999999999999997 38999
Q ss_pred eecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCC
Q 005023 479 SFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAE 558 (718)
Q Consensus 479 ~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~ 558 (718)
++++|.+...++++|||++|.|+|+||++|+|.+||+.|++|++.++++|||++ ||||+++.+++.+++|+++.+|+++
T Consensus 455 ~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~l~ir~~~~~D~a~ 533 (667)
T COG1331 455 RYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDDE-GGFYDTPSDSEDLLIRPKEPTDGAT 533 (667)
T ss_pred eeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCC-CCcccCCCcccccccCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999998 7799999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccEEEEecCCCChhHHHH
Q 005023 559 PSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENM 638 (718)
Q Consensus 559 PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~~~p~~~~~~l~a~~~~~~~~~~~ivi~g~~~~~~~~~l 638 (718)
||+||+++.+|++|+.+||+ ..|.+.|+++|++|++.+.++|.++++++.|++++..+ ..+|||+|. ...++
T Consensus 534 ~S~na~~~~~L~~Ls~ltg~---~~y~e~A~~~L~a~~~~~~~~p~~~~~~~~a~~~~~~~-~~~ivvv~~----~~~~~ 605 (667)
T COG1331 534 PSGNAVAAQALLRLSLLTGD---ARYLEAAEDILQAFAGLAERAPFAHAGLLLAAEFLISG-PLVIVVAGD----PRSEL 605 (667)
T ss_pred CCHHHHHHHHHHHHHhhcCc---hhHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHcCC-ceEEEEeCC----CcHHH
Confidence 99999999999999999996 88999999999999999999999999999999998766 588888882 34579
Q ss_pred HHHHHhcCCCCeEEEEeCCCCcchhhhhhhccccchhhhcccCCCCccEEEEecCCccCCCCCCHHHHHHHhhc
Q 005023 639 LAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLLE 712 (718)
Q Consensus 639 ~~~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayvC~~~~C~~Pv~~~~~l~~~l~~ 712 (718)
++++.+.|+|.+++++...+. +.++.+...++++ ++|||++++|++||+++++|.++|..
T Consensus 606 ~~~~~~~~~P~~~l~~~~~~~-------------~~~~~~~~l~~g~-~ayvC~~~~C~~P~~~~e~l~~~l~~ 665 (667)
T COG1331 606 LRAALRLYLPEKVLVVGTEGY-------------VSLLVDGMLGGGK-TAYVCTGDACLPPVTSPEELAELLAV 665 (667)
T ss_pred HHHHHhcCCcceEEEEecccc-------------cCcchhhccCCCC-eEEEecCCccCCCcCCHHHHHHHHhh
Confidence 999999999999999864331 1111111112455 99999999999999999999999964
No 2
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=100.00 E-value=3.6e-168 Score=1338.77 Aligned_cols=664 Identities=60% Similarity=1.009 Sum_probs=617.9
Q ss_pred chhHHhhhhhcCCcEE---EEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 2 GRRSFCGGTKTRRTHF---LINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 2 ~~~a~~~Ak~e~K~ii---~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
|++|+++|++|||||| ||++|||||||++|||+|++++++||++||.||||||||||||++||.++|+.+|.||||+
T Consensus 101 gqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPm 180 (786)
T KOG2244|consen 101 GQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPM 180 (786)
T ss_pred hHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCce
Confidence 8999999999999996 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeecccccCCCCCCCcccHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHH
Q 005023 79 SVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALR 158 (718)
Q Consensus 79 ~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~~~w~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 158 (718)
+||||||.+||.|||||||++++|+|||..+|++|++.|.++|+.+++.+..+++.|++++++..+ .-.
T Consensus 181 sV~LTPdL~PlvgGTYFPP~d~~g~~gF~TvL~~I~~~w~~kr~tllet~~~~is~ls~al~peaa-----------~g~ 249 (786)
T KOG2244|consen 181 SVFLTPDLKPLVGGTYFPPNDNYGRPGFKTVLKKIKDAWNSKRDTLLETGTYAISELSKALSPEAA-----------TGD 249 (786)
T ss_pred eEEeCCCcccccCCcccCCCCCCCCccHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHhhcCcccc-----------ccc
Confidence 999999999999999999999999999999999999999999999999998888888755442111 112
Q ss_pred HHHHHHHhcccccCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEec
Q 005023 159 LCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV 238 (718)
Q Consensus 159 ~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsv 238 (718)
.+++++.+.++.+.+|||.+||||.+..|.||+.+... +.+++.+.|+.+||+.|+.|||+||||||||||||
T Consensus 250 ~~~ekl~e~i~~~~qGfg~apKFP~~~~L~FLf~~~lt-------~k~~d~~~Mvl~TL~~manGGihDHIg~GFhRYsv 322 (786)
T KOG2244|consen 250 NRAEKLSEGISREAQGFGEAPKFPKACDLDFLFTFNLT-------SKADDEKSMVLFTLQGMANGGIHDHIGGGFHRYSV 322 (786)
T ss_pred hhHHHHHHHHHHHhhhhccCCCCCCccccceeeeeccc-------ccCcHHHHHHHHHHHHHhcCCccccccCceeeccc
Confidence 56788899999999999999999999999999988543 23578999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceE
Q 005023 239 DERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFY 318 (718)
Q Consensus 239 D~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~DADs~~~~~~~~~~EG~yY 318 (718)
|+.|+|||||||||||+||+.+|++||++|+|+.|..+|++|++||.|+|.+|+||||+++||||.|.++++.++||+||
T Consensus 323 ~~~WHvpHFEKMLYDQ~QL~~aysdafklT~de~y~~va~~I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfy 402 (786)
T KOG2244|consen 323 DECWHVPHFEKMLYDQGQLANAYSDAFKLTKDEMYSYVARDILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFY 402 (786)
T ss_pred cccccchhHHHHHhhHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhccCCCCCcccccccCCCcccccccccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechHHHHHHhchh-------HHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHH
Q 005023 319 VWTSKEVEDILGEH-------AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILG 391 (718)
Q Consensus 319 ~Wt~~Ei~~~L~~~-------~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~ 391 (718)
+||.+||+++||+. +++|..+|||++.||+ ++.+||||++.|+|||..+.+.++.|..|+++++++++.|.
T Consensus 403 aWt~dEIqqll~e~~i~p~~~fdl~a~hygvk~sGnv--s~ssDPhgel~gkNVL~vr~s~e~taanf~lsve~~kkll~ 480 (786)
T KOG2244|consen 403 AWTSDEIQQLLGENAIGPASLFDLFAEHYGVKKSGNV--SSSSDPHGELAGKNVLIVRNSTEATAANFSLSVEKYKKLLG 480 (786)
T ss_pred EeeHHHHHHHhCCCCCCcchHHHHHHHHcCCCCCCCC--CCCCCCcccccCceEEEEecchHhhHhhccccHHHHHHHHH
Confidence 99999999999975 4999999999999995 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcccc
Q 005023 392 ECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDE 471 (718)
Q Consensus 392 ~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~ 471 (718)
+++++|+++|.+||+|++|+|||++||||||++|++|+.+++.+ ++|++.|..+++||.++|+|.
T Consensus 481 e~~e~L~~aR~kRPkPHLDsKii~sWnGLviSgl~kag~~~~a~---------------~~y~~~a~~~a~fl~k~m~d~ 545 (786)
T KOG2244|consen 481 ECREKLFDARLKRPKPHLDSKIIVSWNGLVISGLAKAGKILKAE---------------PEYTKYAFPVANFLPKDMIDV 545 (786)
T ss_pred HHHHHHHHHhhcCCCCCccchheeeccchhhHHHHHHHHHhhcC---------------HHHHHHHHHHHhhhhhhhhch
Confidence 99999999999999999999999999999999999999999872 699999999999999999998
Q ss_pred CCCeEEE-eecCCCC----------CCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCC
Q 005023 472 QTHRLQH-SFRNGPS----------KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT 540 (718)
Q Consensus 472 ~~g~l~~-~~~~g~~----------~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~ 540 (718)
..+.|.| +..+|.. ..++|+|||||+|.|||+||+++++.+||++|++|++.+..+||| +||||.+.
T Consensus 546 ~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWd--gggYF~Se 623 (786)
T KOG2244|consen 546 AEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWD--GGGYFISE 623 (786)
T ss_pred hhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHheec--CCceeeee
Confidence 7788888 5444421 345799999999999999999999999999999999999999999 89999998
Q ss_pred CCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC
Q 005023 541 GEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPS 620 (718)
Q Consensus 541 ~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~~~p~~~~~~l~a~~~~~~~~ 620 (718)
.+++++++|.|+++|||+||+||+.++||+||+.+++. +.|+++|.++|..|+.++...|.+.|.|++|+.+. +++
T Consensus 624 ~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~---e~yl~ka~~ll~~fseRl~~vpvAlPeM~~Al~~~-q~g 699 (786)
T KOG2244|consen 624 KTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAA---ESYLNKAHRLLAVFSERLREVPVALPEMCCALMIS-QPG 699 (786)
T ss_pred ccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhH---HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhh-ccC
Confidence 88999999999999999999999999999999999985 89999999999999999999999999999988665 456
Q ss_pred ccEEEEecCCCChhHHHHHHHHHhcCCCCeEEEEeCCCCcchhhhhhhccccchhhhcccCCCCccEEEEecCCccCCCC
Q 005023 621 RKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPV 700 (718)
Q Consensus 621 ~~~ivi~g~~~~~~~~~l~~~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayvC~~~~C~~Pv 700 (718)
.++|||||+++++++.++++++++.|+||++||+++|+++. +++....++...|.+ .++++|+|||++++|++||
T Consensus 700 lk~vvlvGd~~s~d~~~~vs~~~s~yipn~~vihidpsd~e--e~s~~~ls~ka~m~~---~g~k~tayvC~~~aC~~PV 774 (786)
T KOG2244|consen 700 LKQVVLVGDKSSPDLTNMVSAAHSVYIPNKTVIHIDPSDEE--EFSEEHLSNKAEMAK---NGEKVTAYVCQHFACSPPV 774 (786)
T ss_pred cceEEEECCCCChHHHHHHHHHHHhcCCcceEEEeCCCCHH--HHHhccCchHHHHHh---cCCCceEEEecCcccCCCC
Confidence 89999999999999999999999999999999999986643 455555666666653 4789999999999999999
Q ss_pred CCHHHHHHHhh
Q 005023 701 TDPISLENLLL 711 (718)
Q Consensus 701 ~~~~~l~~~l~ 711 (718)
+|+.+|+++|.
T Consensus 775 tdpqeLe~l~s 785 (786)
T KOG2244|consen 775 TDPQELERLLS 785 (786)
T ss_pred CCHHHHHHHhc
Confidence 99999999885
No 3
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=100.00 E-value=1.3e-47 Score=368.50 Aligned_cols=135 Identities=52% Similarity=1.019 Sum_probs=113.0
Q ss_pred chhHHhhhhhcCCcEE---EEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 2 GRRSFCGGTKTRRTHF---LINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 2 ~~~a~~~Ak~e~K~ii---~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
+++|+++||+|||||| ||+||||||||++|||+||+||++||++||+||||||||||||.+||.++|+|+|+||||+
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence 5799999999999995 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeecccccCCCCCCCcccHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 005023 79 SVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLS 136 (718)
Q Consensus 79 ~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~~~w~~~~~~~~~~a~~~~~~l~ 136 (718)
+|||||||+||+++||+|+++++|+++|+++|++|+++|+++|++|.+.|++|.++|+
T Consensus 106 ~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~~~~~~~~~~a~~i~~~l~ 163 (163)
T PF03190_consen 106 TVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWKENREQVEESADEILEALQ 163 (163)
T ss_dssp EEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHHHSHHHHHHHHHHT-SHH-
T ss_pred eEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999988774
No 4
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.96 E-value=7.3e-30 Score=237.91 Aligned_cols=118 Identities=64% Similarity=1.240 Sum_probs=113.5
Q ss_pred chhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 2 GRRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 2 ~~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
+++|+++||++|||||+ .+||+|||+|++++|+||+|++.||++||+|+||+++.|++.+.|++..+.++|++|||+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 67899999999999976 499999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeecccccCCCCCCCcccHHHHHHHHHHHHhh
Q 005023 79 SVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDK 119 (718)
Q Consensus 79 ~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~~~w~~ 119 (718)
+||++|+|++++++||+|+++.++.+||.++|++|.++|++
T Consensus 84 ~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (124)
T cd02955 84 NVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRELWRE 124 (124)
T ss_pred EEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999973
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.93 E-value=1.4e-24 Score=239.13 Aligned_cols=258 Identities=20% Similarity=0.185 Sum_probs=211.8
Q ss_pred HHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-
Q 005023 214 LFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG- 292 (718)
Q Consensus 214 ~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~- 292 (718)
..-|..... -.+|+..|||+ .++|.++.+..-.|.+|.||++|++|+.+|++++++.|++.|+++++||.+++++++
T Consensus 17 ~~~~~fw~~-~~~d~~~gg~~-~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~ 94 (384)
T cd00249 17 EDLLPFWLE-AGLDREAGGFF-ECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDH 94 (384)
T ss_pred HHHHHHHHh-cCCCCCCCCeE-EEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCC
Confidence 344444444 35899899999 689999998767999999999999999999999999999999999999999999998
Q ss_pred CceeeeccCCcccccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCc
Q 005023 293 GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS 372 (718)
Q Consensus 293 Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~ 372 (718)
|||+.+.|.|..+.+ .+
T Consensus 95 Gg~~~~~~~~g~~~~-----------------------------------------------------~~---------- 111 (384)
T cd00249 95 GGWYFALDQDGRPVD-----------------------------------------------------AT---------- 111 (384)
T ss_pred CCEEEEEcCCCCCcc-----------------------------------------------------cc----------
Confidence 999999876542100 00
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHH
Q 005023 373 SASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKE 452 (718)
Q Consensus 373 ~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~ 452 (718)
+.+.+ .+++|.||+.+++++++ ++
T Consensus 112 ----------------------------------~~l~~------~a~~l~ala~~~~at~d----------------~~ 135 (384)
T cd00249 112 ----------------------------------KDLYS------HAFALLAAAQAAKVGGD----------------PE 135 (384)
T ss_pred ----------------------------------cchHH------HHHHHHHHHHHHHhcCC----------------HH
Confidence 01222 38999999999999998 89
Q ss_pred HHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccccc
Q 005023 453 YMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 532 (718)
Q Consensus 453 ~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~ 532 (718)
|++.|+++++++.++++ +++|+++.....+....++ .++|++++.+++.++++|++++|++.|+++++.+.++|++++
T Consensus 136 ~l~~A~~~~~~l~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~ 213 (384)
T cd00249 136 ARALAEETIDLLERRFW-EDHPGAFDEADPGTPPYRG-SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAE 213 (384)
T ss_pred HHHHHHHHHHHHHHHhc-cCCCcccCCCCCCCCCCCC-CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999 4456665443332233455 799999999999999999999999999999999999999988
Q ss_pred CCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 005023 533 GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 599 (718)
Q Consensus 533 ~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i 599 (718)
+|+++.+..++..++ ..+..+...|++++.++.+|++|++++++ +.|.+.|++++..+....
T Consensus 214 ~G~~~e~~~~~~~~~--~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~---~~~~~~a~~~~~~~~~~~ 275 (384)
T cd00249 214 SGVVREHFDEDWNPY--NGDKGRHQEPGHQFEWAWLLLRIASRSGQ---AWLIEKARRLFDLALALG 275 (384)
T ss_pred cCeEEEEECCCCCCC--cCcCCCcCCCchHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHhC
Confidence 888887765555443 34455778899999999999999999985 789999999988876544
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.91 E-value=7.1e-22 Score=217.71 Aligned_cols=308 Identities=16% Similarity=0.093 Sum_probs=230.3
Q ss_pred HHHHHHHHHHh-cccccCCCCCC------CCCCCCh---hHHHHHHHhhh-hhcccCCCCCCHHHHHHHHHHHHHHHhCC
Q 005023 156 ALRLCAEQLSK-SYDSRFGGFGS------APKFPRP---VEIQMMLYHSK-KLEDTGKSGEASEGQKMVLFTLQCMAKGG 224 (718)
Q Consensus 156 ~~~~~~~~l~~-~~D~~~GGfg~------apKFP~~---~~l~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~TL~~m~~gG 224 (718)
.++.++..|.. .+|+++|||.. .|. +.+ ....+++.... ... ..++++.+++|.++++.|.. -
T Consensus 15 ~~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~-~~~k~~~~~ar~i~~~a~a~~----~~~~~~~l~~A~~~~~fl~~-~ 88 (384)
T cd00249 15 LLEDLLPFWLEAGLDREAGGFFECLDRDGQPF-DTDRRLWLQARQVYCFAVAYL----LGWRPEWLEAAEHGLEYLDR-H 88 (384)
T ss_pred HHHHHHHHHHhcCCCCCCCCeEEEECCCCCCC-CCCCeEEEecHHHHHHHHHHH----hcCChhHHHHHHHHHHHHHH-h
Confidence 45677788877 57999999965 122 111 11112222111 111 22467899999999999998 6
Q ss_pred CcccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcc
Q 005023 225 IHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSA 304 (718)
Q Consensus 225 i~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~DADs~ 304 (718)
.+|...|||++ ++|++|.+.+..|+|||+|.+|.+|+++|++|+++.|++.|+++++++.+.++++.|+||...+.|..
T Consensus 89 ~~d~~~Gg~~~-~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~ 167 (384)
T cd00249 89 GRDPDHGGWYF-ALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTP 167 (384)
T ss_pred CcCCCCCCEEE-EEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCC
Confidence 77877799984 99999998889999999999999999999999999999999999999999998555777654332210
Q ss_pred cccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHH
Q 005023 305 ETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLE 384 (718)
Q Consensus 305 ~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~ 384 (718)
.
T Consensus 168 ------------------------------------------~------------------------------------- 168 (384)
T cd00249 168 ------------------------------------------P------------------------------------- 168 (384)
T ss_pred ------------------------------------------C-------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHH
Q 005023 385 KYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFI 464 (718)
Q Consensus 385 ~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l 464 (718)
.|...+ ++.++.+|.+++.++++ ++|++.|+++++.+
T Consensus 169 ---------------------~~~~~~------~~h~~~all~l~~~tgd----------------~~~~~~A~~l~~~~ 205 (384)
T cd00249 169 ---------------------YRGSNP------HMHLLEAMLAAYEATGE----------------QKYLDRADEIADLI 205 (384)
T ss_pred ---------------------CCCCCh------hHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHH
Confidence 000001 13447789999999998 78999999999999
Q ss_pred HHhccccCCCeEEEeecCCCCCCC------CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcccc
Q 005023 465 RRHLYDEQTHRLQHSFRNGPSKAP------GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 538 (718)
Q Consensus 465 ~~~~~d~~~g~l~~~~~~g~~~~~------~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~ 538 (718)
.++++++.+|+++..+.++..... ....-.+..+.+++.++++++++.|++.|+++++.+.++++|+++|++|.
T Consensus 206 ~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~ 285 (384)
T cd00249 206 LDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYY 285 (384)
T ss_pred HHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEE
Confidence 999998777888866543311011 11111345678999999999999999999999999999999999998888
Q ss_pred CCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 005023 539 TTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 600 (718)
Q Consensus 539 t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~ 600 (718)
+..++... ...|+..+++++.++.+++.|+.+||+ +.|.+.++++++.......
T Consensus 286 ~~~~~~~~-----~~~~~~~~w~~~E~~~a~~~l~~~tgd---~~~~~~~~~~~~~~~~~~~ 339 (384)
T cd00249 286 SFLDDGGL-----LEDDDKRWWPQTEALKAALALAGITGD---ERYWQWYQRAWAYLWRHFI 339 (384)
T ss_pred eeECCCCC-----cccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhcC
Confidence 33222221 245789999999999999999999996 7899999888888755443
No 7
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.73 E-value=6.6e-17 Score=176.47 Aligned_cols=240 Identities=19% Similarity=0.225 Sum_probs=175.4
Q ss_pred cEEEEecCCCCCC-CCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCCcccccCc
Q 005023 232 GFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSAETEGA 309 (718)
Q Consensus 232 GF~RYsvD~~W~v-PHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~-Ggf~sa~DADs~~~~~~ 309 (718)
|||- +.|.++.+ +...|.+.-||+++++|+.||+ ++++.|++.|+++++||.+.+++++ ||||++.|.+. +
T Consensus 1 Gf~~-~ld~~g~~~~~~~k~~~~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~---- 73 (346)
T PF07221_consen 1 GFFE-CLDRDGKPDDSDKKRLWVQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-P---- 73 (346)
T ss_dssp SBE--EBBTTS-BECGGEEEHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-E----
T ss_pred Ccee-eeCCCCCCCCCCCceeeeeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-C----
Confidence 6776 48999986 4455699999999999999999 8899999999999999999999887 99999875432 1
Q ss_pred ccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHH
Q 005023 310 TRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 389 (718)
Q Consensus 310 ~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~ 389 (718)
+..
T Consensus 74 --------------------------------------------------------~~~--------------------- 76 (346)
T PF07221_consen 74 --------------------------------------------------------LDP--------------------- 76 (346)
T ss_dssp --------------------------------------------------------EE----------------------
T ss_pred --------------------------------------------------------Ccc---------------------
Confidence 000
Q ss_pred HHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 005023 390 LGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 469 (718)
Q Consensus 390 l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~ 469 (718)
..-..-++++|.||++ ++++++ +++++.|++++++|.++++
T Consensus 77 ----------------------~~~~Y~~af~l~ala~-~~~tg~----------------~~~~~~A~~~~~~l~~~~~ 117 (346)
T PF07221_consen 77 ----------------------QKDLYDQAFALLALAE-ARATGD----------------PEALELAEQTLEFLERRFW 117 (346)
T ss_dssp -----------------------EEHHHHHHHHHHHHH-HHCTT-----------------TTHHHHHHHHHHHHHHHTE
T ss_pred ----------------------ccchHHHHHHHHHHHH-HHHhCC----------------hhHHHHHHHHHHHHHHHhc
Confidence 0001125899999999 788887 7899999999999999999
Q ss_pred ccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccc-
Q 005023 470 DEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLL- 548 (718)
Q Consensus 470 d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~- 548 (718)
+++.|++...+... ....+..++++++++|++.||++|+++.|++.|.+|.+.+..+|+|+++|...+-...+.....
T Consensus 118 d~~~g~~~~~~~~~-~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~ 196 (346)
T PF07221_consen 118 DPEGGGYRESFDPD-WSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPD 196 (346)
T ss_dssp ETTTTEE--EETTT-SSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETT
T ss_pred ccccCcceeccCCc-cccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccc
Confidence 98766655544332 1222458999999999999999999999999999999999999999888754432222222111
Q ss_pred -ccccCCC--CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 005023 549 -RVKEDHD--GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFE 596 (718)
Q Consensus 549 -r~k~~~D--~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~ 596 (718)
...+... ...|.++-.+++.|++++..++.. ++.+.+.|.+++....
T Consensus 197 ~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~-~~~~~~~a~~l~~~~~ 246 (346)
T PF07221_consen 197 GSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRG-DPDWLERARRLFDFAL 246 (346)
T ss_dssp TTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT--HTHHHHHHHHHHHHH
T ss_pred cccccccccCccCCchhHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHH
Confidence 0000011 367999999999999998444432 3678888877766543
No 8
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.69 E-value=4.9e-17 Score=177.50 Aligned_cols=269 Identities=21% Similarity=0.189 Sum_probs=178.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 005023 206 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 285 (718)
Q Consensus 206 ~~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~ 285 (718)
.+..++.|.++++.|.. ..+|...|||++ ++++.. +.+..|.+||+|..|.++++ +.+|+++.+++.|+++++++.
T Consensus 38 ~~~~l~~A~~~~~fl~~-~~~D~~~Gg~~~-~~~~~~-~~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~ 113 (346)
T PF07221_consen 38 RPEYLELAEHGFDFLRK-HFRDPEYGGWYR-SLDDGG-PLDPQKDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLE 113 (346)
T ss_dssp SHHHHHHHHHHHHHHHH-TTBTTTTSSBSS-EEETTE-EEE--EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH-hcccCCCCCEEE-EeCCCC-CCccccchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHH
Confidence 57899999999999988 677999999996 556666 67789999999999999999 899999999999999999999
Q ss_pred HhccCCC-CceeeeccCCcccccCcccccCCceEeechHHHHHHhchhH---HHHHHHhcccCCCCcCCCCCCCCCCccC
Q 005023 286 RDMIGPG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA---ILFKEHYYLKPTGNCDLSRMSDPHNEFK 361 (718)
Q Consensus 286 ~~m~~p~-Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~---~~~~~~~~v~~~Gn~~~~~~~dp~~~~e 361 (718)
+.+++|+ |||..+.+.|..+. . -..... +.+...+.++.+.
T Consensus 114 ~~~~d~~~g~~~~~~~~~~~~~--------------r------~~n~~mhl~eA~l~l~~~~~~~--------------- 158 (346)
T PF07221_consen 114 RRFWDPEGGGYRESFDPDWSPP--------------R------GQNPHMHLLEAFLALYEATGDP--------------- 158 (346)
T ss_dssp HHTEETTTTEE--EETTTSSCB--------------E------EHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHhcccccCcceeccCCccccC--------------C------CCChhHHHHHHHHHHHHhccCH---------------
Confidence 9999997 44445555543110 0 000000 0111111111100
Q ss_pred CcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCc--hh---------------hhchHHHHHHH
Q 005023 362 GKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDD--KV---------------IVSWNGLVISS 424 (718)
Q Consensus 362 g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Dd--ki---------------lt~WNgl~I~A 424 (718)
.+ .+...++++.+.+++......+..-++|. +. --.-+--.+|-
T Consensus 159 ------------~~-------~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wl 219 (346)
T PF07221_consen 159 ------------RY-------LDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWL 219 (346)
T ss_dssp ------------HH-------HHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHH
T ss_pred ------------HH-------HHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHH
Confidence 00 02233334444444444333333333332 11 11222334677
Q ss_pred HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCC-CCCCCcccHHHHHHHHH
Q 005023 425 FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPS-KAPGFLDDYAFLISGLL 502 (718)
Q Consensus 425 La~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~-~~~~~l~DyA~li~all 502 (718)
|.+++...+. .++++++.|.+++++..++-||+++|+++.. -.+|.+ ...+.++.++.++.|++
T Consensus 220 l~~~~~~~~~--------------~~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~ 285 (346)
T PF07221_consen 220 LLEAARLTGR--------------GDPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALL 285 (346)
T ss_dssp HHHHHHHCHC--------------T-HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHH
T ss_pred HHHHHHhccc--------------ccHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHH
Confidence 7787743332 1278999999999999999999988877765 456654 45688999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcc
Q 005023 503 DLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSV 546 (718)
Q Consensus 503 ~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l 546 (718)
.+|+.|+++.|++.+.++.+.+.++|.|++.|+||..-+.+..+
T Consensus 286 ~~~~~tg~~~~~~~~~~~~~~~~~~~~d~~~G~W~~~l~~dg~~ 329 (346)
T PF07221_consen 286 AAYELTGDEKYLDWARRVWDYIFRHFIDPEYGEWFDYLDRDGSP 329 (346)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHTB-TTTSSB-SEE-TTS-B
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHhCCCCCCCeeEeeECCCCCC
Confidence 99999999999999999999999999999999999865555443
No 9
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.65 E-value=2.4e-16 Score=147.41 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=66.3
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
++|++.||++|||||+ .+||+||++|++++|+||+|++++|++||.|+||.|....-... .| .|.|++
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~--------~g-~~vPti 83 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSP--------DG-QYVPRI 83 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCc--------cC-cccCeE
Confidence 6899999999999976 48999999999999999999999999999999987643101111 33 589999
Q ss_pred EEeCCCCceee
Q 005023 80 VFLSPDLKPLM 90 (718)
Q Consensus 80 vfl~p~g~p~~ 90 (718)
+|++|+|+++.
T Consensus 84 vFld~~g~vi~ 94 (130)
T cd02960 84 MFVDPSLTVRA 94 (130)
T ss_pred EEECCCCCCcc
Confidence 99999999875
No 10
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.65 E-value=3.9e-16 Score=143.51 Aligned_cols=100 Identities=12% Similarity=0.202 Sum_probs=85.3
Q ss_pred hhHHhhhhhcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 3 RRSFCGGTKTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
++|+++||+++|++++| +||+||+.|++++|+|++|.++||+|||.+++|.++ |+..++ .. .++..|+|+.
T Consensus 7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~~~-~~----~~~~~~~P~~ 80 (114)
T cd02958 7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQRF-LQ----SYKVDKYPHI 80 (114)
T ss_pred HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHHHH-HH----HhCccCCCeE
Confidence 68999999999999875 999999999999999999999999999999999986 565443 22 2678899999
Q ss_pred EEeCC-CCceeec-ccccCCCCCCCcccHHHHHHHHH
Q 005023 80 VFLSP-DLKPLMG-GTYFPPEDKYGRPGFKTILRKVK 114 (718)
Q Consensus 80 vfl~p-~g~p~~~-~~y~p~~~~~~~~~f~~~L~~i~ 114 (718)
+|++| +|+++.. .+|.+++ .|++.|+.+.
T Consensus 81 ~~i~~~~g~~l~~~~G~~~~~------~f~~~L~~~~ 111 (114)
T cd02958 81 AIIDPRTGEVLKVWSGNITPE------DLLSQLIEFL 111 (114)
T ss_pred EEEeCccCcEeEEEcCCCCHH------HHHHHHHHHH
Confidence 99999 8999874 4788776 6887777653
No 11
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.57 E-value=2.7e-15 Score=129.85 Aligned_cols=73 Identities=27% Similarity=0.468 Sum_probs=62.9
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
++|+++|+++|||||+ .+||+||+.|++++|+|++|.++++++||.|+||.+++......++ .|+|+.
T Consensus 7 ~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---------~~~P~~ 77 (82)
T PF13899_consen 7 EEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---------QGYPTF 77 (82)
T ss_dssp HHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---------CSSSEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---------ccCCEE
Confidence 6899999999999976 4999999999999999999999999999999999976644332222 469999
Q ss_pred EEeCC
Q 005023 80 VFLSP 84 (718)
Q Consensus 80 vfl~p 84 (718)
+|++|
T Consensus 78 ~~ldp 82 (82)
T PF13899_consen 78 FFLDP 82 (82)
T ss_dssp EEEET
T ss_pred EEeCC
Confidence 99997
No 12
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.3e-12 Score=140.64 Aligned_cols=304 Identities=15% Similarity=0.100 Sum_probs=226.2
Q ss_pred HHhCCCcccCCCcEEEEecCCCCCCCC-CcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 005023 220 MAKGGIHDHVGGGFHRYSVDERWHVPH-FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 298 (718)
Q Consensus 220 m~~gGi~D~v~GGF~RYsvD~~W~vPH-FEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa 298 (718)
|-..--.|..+||||- ..|.+..+-. --|.+--+++++++|+.|+.....+.++++|.+.++|+.+.-++++||+|..
T Consensus 23 ~w~~~g~d~~~GGffe-~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~ 101 (388)
T COG2942 23 FWLNAGVDTEGGGFFE-ALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYFA 101 (388)
T ss_pred hhcccCcCCCCCCcee-eeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEEE
Confidence 3445567888999997 6677777655 6788999999999999999999888899999999999999999999999999
Q ss_pred ccCCcccccCcccccCCceEeechHHHHHHhchhH--------HHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccC
Q 005023 299 EDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA--------ILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELN 370 (718)
Q Consensus 299 ~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~--------~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~ 370 (718)
++.|..+.+..++..--+|-+.-......++++++ ++..++|-=...+-.-.+-.+++..+...+.+.|+..
T Consensus 102 ~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl~sNp~MHl~E 181 (388)
T COG2942 102 LDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPLGSNPHMHLLE 181 (388)
T ss_pred ecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCccCCCcchHHHH
Confidence 99998888888888777888888888777776442 2333333211111100011122222333445555432
Q ss_pred CchHHHHhcCCCH-----HHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHH---------------HHHHHHHHH
Q 005023 371 DSSASASKLGMPL-----EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV---------------ISSFARASK 430 (718)
Q Consensus 371 ~~~~~a~~~g~~~-----~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~---------------I~ALa~A~~ 430 (718)
. +...+..+. +...++.+.++.+..+.++.+.+-++|.. ||.-- .+.|..-++
T Consensus 182 A---~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d----W~p~~~frg~~~ePGH~fEW~~Lll~~a~ 254 (388)
T COG2942 182 A---MLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD----WNPAHGFRGRGIEPGHQFEWAWLLLDIAR 254 (388)
T ss_pred H---HHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc----CCcCCCcccCCCCCchHHHHHHHHHHHHH
Confidence 2 222222221 33445667778888888888888888887 75431 345666666
Q ss_pred HhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCC-CCCCCcccHHHHHHHHHHHHHHc
Q 005023 431 ILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPS-KAPGFLDDYAFLISGLLDLYEFG 508 (718)
Q Consensus 431 ~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~-~~~~~l~DyA~li~all~LYeaT 508 (718)
..++ ...+..|+++++-..++-||++.|+++-+ +.||.+ +..+.+++++..+.+++.|++.|
T Consensus 255 ~~~~----------------~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~ 318 (388)
T COG2942 255 RRGR----------------AWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETT 318 (388)
T ss_pred Hhch----------------hHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcC
Confidence 6665 57899999999999999999999888877 567765 45688999999999999999999
Q ss_pred C-ChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccc
Q 005023 509 S-GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVL 547 (718)
Q Consensus 509 g-d~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~ 547 (718)
+ ++.|.++..++.+++..+|.|++.|.||..-..+..++
T Consensus 319 ~~~~~y~~~~~R~~~~~~~hl~d~~~G~W~~~l~~dg~~~ 358 (388)
T COG2942 319 GARERYWQWYARAWDYLWWHLDDPEYGLWFDKLDEDGEVL 358 (388)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCcCCcchhhcCCCCcee
Confidence 9 99999999999999999999999999998655544433
No 13
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.49 E-value=2.5e-12 Score=141.92 Aligned_cols=288 Identities=20% Similarity=0.251 Sum_probs=180.7
Q ss_pred HHHHHHHhccccc-CCCCCC---CC--CCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCc
Q 005023 159 LCAEQLSKSYDSR-FGGFGS---AP--KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 232 (718)
Q Consensus 159 ~~~~~l~~~~D~~-~GGfg~---ap--KFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~GG 232 (718)
.++..+.+.|+.. .|++.+ .| ..|.+..+.-|..++.+++ ++...+++..++..+.... +|.
T Consensus 8 ~~~~~l~~~y~~~~~g~~~g~~~~~~~~W~~a~~~~~~~d~~~~t~-------d~~y~~~~~~~~~~~~~~~-~~~---- 75 (370)
T PF03663_consen 8 SAADALQKYYNGNASGNIPGLFPSPYYWWWQAVMLSALIDYYRRTG-------DPTYNDLIQNALLNQRGPN-YDS---- 75 (370)
T ss_dssp HHHHHHHHHHB-SSTTT-B-SEES--H-HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHT-TSS----
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCcChHHHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHhccc-ccc----
Confidence 3445555677776 555432 22 3556677788888887753 4788999999999988744 121
Q ss_pred EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHHHHhccCCC---CceeeeccC-Cc
Q 005023 233 FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDV-----FYSYICRDILDYLRRDMIGPG---GEIFSAEDA-DS 303 (718)
Q Consensus 233 F~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~-----~y~~~A~~~~~~l~~~m~~p~---Ggf~sa~DA-Ds 303 (718)
|.. . .| ....-.-|||.+..++.+||++|+++ .|++.|+++.+++.+ -+++. ||+++..+. +.
T Consensus 76 ~~~---~-~~---~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~-~wd~~~cgGGi~W~~~~~~~ 147 (370)
T PF03663_consen 76 YNP---S-NG---SGDRYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLIS-GWDDTSCGGGIWWSIDDTNS 147 (370)
T ss_dssp S-----S----------BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHH-TB-SGG-GS-BEEET----T
T ss_pred ccc---c-cc---cccCccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHH-hcCCccCCCCccccccccCC
Confidence 110 0 00 01123346999999999999999999 999999999999995 44443 788776321 00
Q ss_pred ccccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCH
Q 005023 304 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 383 (718)
Q Consensus 304 ~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~ 383 (718)
+ ...||
T Consensus 148 ------------------------------------------~-------------~~~Kn------------------- 153 (370)
T PF03663_consen 148 ------------------------------------------G-------------YDYKN------------------- 153 (370)
T ss_dssp ------------------------------------------E-------------EEEEE-------------------
T ss_pred ------------------------------------------C-------------CCccc-------------------
Confidence 0 01111
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 005023 384 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 463 (718)
Q Consensus 384 ~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~ 463 (718)
+--|++++.+.++.|+++++ +.|++.|+++++|
T Consensus 154 -------------------------------a~sN~~~~~laarL~~~t~~----------------~~Yl~~A~~~~~W 186 (370)
T PF03663_consen 154 -------------------------------AISNGPAAQLAARLYRITGD----------------QTYLDWAKKIYDW 186 (370)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
T ss_pred -------------------------------ccchHHHHHHHHHHHHhcCC----------------hHHHHHHHHHHHH
Confidence 12489999999999999987 7899999999999
Q ss_pred HHH-hccccCCCeEEEeec-CC---CCCCCCCcccHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHhcccccCCccc
Q 005023 464 IRR-HLYDEQTHRLQHSFR-NG---PSKAPGFLDDYAFLISGLLDLYEFGSGT-KWLVWAIELQNTQDELFLDREGGGYF 537 (718)
Q Consensus 464 l~~-~~~d~~~g~l~~~~~-~g---~~~~~~~l~DyA~li~all~LYeaTgd~-~~L~~A~~L~~~~~~~F~D~~~Gg~f 537 (718)
+.+ +|+|+++|.++.... ++ ......+.+.++.+|.|++.||++|+++ .||+.|++|++.+..+|+++.+|-++
T Consensus 187 ~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~~gil~ 266 (370)
T PF03663_consen 187 MRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINHFFDNGDGILT 266 (370)
T ss_dssp HHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT--EE-
T ss_pred hhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCCCeeee
Confidence 999 999887787776542 22 2345678899999999999999999877 99999999999999998876544444
Q ss_pred cCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 005023 538 NTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVF 595 (718)
Q Consensus 538 ~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~ 595 (718)
+..-+. ....++-.+.-.+++++.|..|..+... ..+.|.+..++-..+.
T Consensus 267 e~~ce~-------~~~~~~d~~~Fkgi~~r~L~~l~~~~~~-~~~~~~~~l~~~a~~a 316 (370)
T PF03663_consen 267 EEACEP-------SGTCDGDQPLFKGIFARYLADLAQVAPD-TADTYRDFLRKNADAA 316 (370)
T ss_dssp ----------------SSSGGGGHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHH
T ss_pred cccccc-------CcCcCCccHHHHHHHHHHHHHHHHHCcc-hHHHHHHHHHHHHHHH
Confidence 431110 1113445688899999999999999852 2244555444444433
No 14
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.40 E-value=7.5e-13 Score=123.36 Aligned_cols=105 Identities=19% Similarity=0.376 Sum_probs=81.0
Q ss_pred hHHhhhhhcC-CcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHH-----HHHHHHHhcCCC
Q 005023 4 RSFCGGTKTR-RTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKV-----YMTYVQALYGGG 74 (718)
Q Consensus 4 ~a~~~Ak~e~-K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~-----y~~~~q~~~g~~ 74 (718)
++++.|++++ |+|++ .+||+||++|+.+.++++++.+.++++|+.++||.++.+.+... =.......+++.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 6789999999 99966 49999999999999999999999999999999999876422100 001111236789
Q ss_pred CCCcEEEeCCC-Cceeec-ccccCCCCCCCcccHHHHHHHHH
Q 005023 75 GWPLSVFLSPD-LKPLMG-GTYFPPEDKYGRPGFKTILRKVK 114 (718)
Q Consensus 75 GwP~~vfl~p~-g~p~~~-~~y~p~~~~~~~~~f~~~L~~i~ 114 (718)
|+|+++|++++ |+++.. .+|.+++ .|.++|+.+.
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~------~~~~~l~~~~ 119 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPD------EFLAYLEYVQ 119 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHH------HHHHHHHHHH
Confidence 99999999999 888753 4666644 6888888763
No 15
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.39 E-value=5.9e-13 Score=123.28 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=75.3
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
++|+++|++++||||+ .+||+||++|+...++.+++.+ ++.+||.|.||.++.+. ...|. ...+++|++
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~-~~~~~------~~g~~vPt~ 80 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPK-DEEFS------PDGGYIPRI 80 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCch-hhhcc------cCCCccceE
Confidence 5899999999999976 4999999999999888888776 68899999999765443 33322 112359999
Q ss_pred EEeCCCCceeecccccCCCCCCCcccHHHHHHHHHH
Q 005023 80 VFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 115 (718)
Q Consensus 80 vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~~ 115 (718)
+|++|+|+++...+ ..-+.+...+|.+.|+.|-+
T Consensus 81 ~f~~~~Gk~~~~~~--~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 81 LFLDPSGDVHPEII--NKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred EEECCCCCCchhhc--cCCCCccccccCCCHHHHHh
Confidence 99999999974211 11122334578888877643
No 16
>smart00594 UAS UAS domain.
Probab=99.39 E-value=8.1e-13 Score=123.20 Aligned_cols=78 Identities=18% Similarity=0.320 Sum_probs=67.8
Q ss_pred hhHHhhhhhcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 3 RRSFCGGTKTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
++|+++|++++|++++| +||.+|++|.+++|.|++|.+++|+|||.+++|.+.. +..++ ...++..|+|+.
T Consensus 17 ~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~-eg~~l-----~~~~~~~~~P~~ 90 (122)
T smart00594 17 EAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS-EGQRV-----SQFYKLDSFPYV 90 (122)
T ss_pred HHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh-hHHHH-----HHhcCcCCCCEE
Confidence 68999999999999875 8999999999999999999999999999999998864 33222 123677899999
Q ss_pred EEeCCCC
Q 005023 80 VFLSPDL 86 (718)
Q Consensus 80 vfl~p~g 86 (718)
+|++|+|
T Consensus 91 ~~l~~~~ 97 (122)
T smart00594 91 AIVDPRT 97 (122)
T ss_pred EEEecCC
Confidence 9999998
No 17
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.5e-11 Score=137.30 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=125.9
Q ss_pred cchHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceEeechHHHH
Q 005023 248 EKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVE 326 (718)
Q Consensus 248 EKmLyD-nA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~ 326 (718)
.|+|-| |+++|.+++.|+++++++.|.++|+++.+|+.++|+.. .+...-
T Consensus 406 dkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~~~~--------------------------- 456 (667)
T COG1331 406 DKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLLRRY--------------------------- 456 (667)
T ss_pred cceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chheee---------------------------
Confidence 467777 99999999999999999999999999999999999864 332210
Q ss_pred HHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCC
Q 005023 327 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPR 406 (718)
Q Consensus 327 ~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~ 406 (718)
++|.. -..
T Consensus 457 ---------------------------------~~G~a---------------------------------------~~~ 464 (667)
T COG1331 457 ---------------------------------RGGEA---------------------------------------AVA 464 (667)
T ss_pred ---------------------------------ecCcc---------------------------------------ccc
Confidence 11110 012
Q ss_pred CCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC--
Q 005023 407 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP-- 484 (718)
Q Consensus 407 P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~-- 484 (718)
..++|+ +++|.||..+|+++++ .+||+.|+++++-+.+++||++ |+||.+..+++
T Consensus 465 g~leDY------A~~i~gll~lye~t~d----------------~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~l 521 (667)
T COG1331 465 GLLEDY------AFLILGLLALYEATGD----------------LAYLEKAIELADEAIADFWDDE-GGFYDTPSDSEDL 521 (667)
T ss_pred ccchhH------HHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHHhcCCC-CCcccCCCccccc
Confidence 345677 9999999999999988 7999999999999999999987 56776543332
Q ss_pred ------CCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q 005023 485 ------SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 528 (718)
Q Consensus 485 ------~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F 528 (718)
.......+.+|..|.+|+.|..+|++.+|.+.|.++++.+-.+.
T Consensus 522 ~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~ 571 (667)
T COG1331 522 LIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA 571 (667)
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 22347788999999999999999999999999999987765443
No 18
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.31 E-value=4.3e-12 Score=114.29 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=75.2
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
++++++|++++|++++ .+||++|+.|....++++++++.++++|+.++||.+++++....+++. +|..|+|++
T Consensus 1 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~----~~i~~~Pti 76 (104)
T cd02953 1 EAALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKR----FGVFGPPTY 76 (104)
T ss_pred CHHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHH----cCCCCCCEE
Confidence 3678999999999865 499999999999999999999999989999999998865544333332 688999999
Q ss_pred EEeCC-CCceee-cccccCCC
Q 005023 80 VFLSP-DLKPLM-GGTYFPPE 98 (718)
Q Consensus 80 vfl~p-~g~p~~-~~~y~p~~ 98 (718)
+|+++ +|+... ..+|.+.+
T Consensus 77 ~~~~~~~g~~~~~~~G~~~~~ 97 (104)
T cd02953 77 LFYGPGGEPEPLRLPGFLTAD 97 (104)
T ss_pred EEECCCCCCCCcccccccCHH
Confidence 99999 898764 34677654
No 19
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.09 E-value=4.4e-09 Score=116.23 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=105.5
Q ss_pred CCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEeecCC-C
Q 005023 408 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHSFRNG-P 484 (718)
Q Consensus 408 ~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~--g~l~~~~~~g-~ 484 (718)
+.||. +.++.|+.+||+++++.+ ...++||+.|+++++++. ..||... |++++.-.+. .
T Consensus 86 ~~DD~------aw~~la~l~aye~t~~~~-----------~~~~~yL~~A~~i~~~~~-~~wd~~~cgGGi~W~~~~~~~ 147 (370)
T PF03663_consen 86 YYDDN------AWWALALLRAYELTGDQP-----------SDNPKYLDLAKEIFDFLI-SGWDDTSCGGGIWWSIDDTNS 147 (370)
T ss_dssp BHHHH------HHHHHHHHHHHHHH--H----------------HHHHHHHHHHHHHH-HTB-SGG-GS-BEEET----T
T ss_pred ccChH------HHHHHHHHHHHHhhCCCc-----------chHHHHHHHHHHHHHHHH-HhcCCccCCCCccccccccCC
Confidence 45666 889999999999999821 001399999999999999 7778763 7887762110 0
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-hcccccCCccccCCCCCCccccccccCCCCCCCChHH
Q 005023 485 SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 563 (718)
Q Consensus 485 ~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~-~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns 563 (718)
...-+-.--.+-++...+.||++|+++.||++|+++.+.+.+ .++|+++|.+++.-..+..- .......-..-.+
T Consensus 148 ~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c----~~~~~~~~TYNqG 223 (370)
T PF03663_consen 148 GYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNC----TNINKTKWTYNQG 223 (370)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-----B-TT---HHHHH
T ss_pred CCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCC----CcCCCceechHHH
Confidence 000111123567888999999999999999999999999999 99998888888753211100 0011112223446
Q ss_pred HHHHHHHHHHHHhCCCCch-HHHHHHHHHHHHHHHH
Q 005023 564 VSVINLVRLASIVAGSKSD-YYRQNAEHSLAVFETR 598 (718)
Q Consensus 564 ~~a~~LlrL~~lt~~~~~~-~y~e~a~~~l~~~~~~ 598 (718)
+++.++..|+.+|++ + .|+++|++++.+....
T Consensus 224 ~~l~a~~~Ly~~T~~---~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 224 VFLGAAAYLYNATND---EQTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHH
Confidence 899999999999975 4 8999999999987544
No 20
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.07 E-value=2.8e-10 Score=132.22 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=81.1
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
++++++|++++|+|++ .+||++|++|++.+|+|++|++.++ +|+.++||.+++.+-...+++. +|..|.|++
T Consensus 464 ~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~----~~v~g~Pt~ 538 (571)
T PRK00293 464 DQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKH----YNVLGLPTI 538 (571)
T ss_pred HHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHH----cCCCCCCEE
Confidence 5788889999999976 3899999999999999999999997 5999999998765433333332 688999999
Q ss_pred EEeCCCCceee---cccccCCCCCCCcccHHHHHHHHH
Q 005023 80 VFLSPDLKPLM---GGTYFPPEDKYGRPGFKTILRKVK 114 (718)
Q Consensus 80 vfl~p~g~p~~---~~~y~p~~~~~~~~~f~~~L~~i~ 114 (718)
+|++++|+++. ..+|.+++ .|.+.|+++.
T Consensus 539 ~~~~~~G~~i~~~r~~G~~~~~------~f~~~L~~~~ 570 (571)
T PRK00293 539 LFFDAQGQEIPDARVTGFMDAA------AFAAHLRQLQ 570 (571)
T ss_pred EEECCCCCCcccccccCCCCHH------HHHHHHHHhc
Confidence 99999999852 24566654 6888877653
No 21
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.01 E-value=8.3e-11 Score=106.96 Aligned_cols=95 Identities=29% Similarity=0.419 Sum_probs=68.7
Q ss_pred hhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHH-------------HHHHHHHHhcC
Q 005023 9 GTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK-------------VYMTYVQALYG 72 (718)
Q Consensus 9 Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~-------------~y~~~~q~~~g 72 (718)
||+++|+++. ..||+||+.|.++.++++++...++++|..|.|+.++..+... .-.+..+ ..|
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 79 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQ-RYG 79 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHH-HTT
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHH-HcC
Confidence 6788999865 4899999999999999999999999899999999876432211 1112233 358
Q ss_pred CCCCCcEEEeCCCCceee-cccccCCCCCCCcccHHHHH
Q 005023 73 GGGWPLSVFLSPDLKPLM-GGTYFPPEDKYGRPGFKTIL 110 (718)
Q Consensus 73 ~~GwP~~vfl~p~g~p~~-~~~y~p~~~~~~~~~f~~~L 110 (718)
+.|+|+.+|++++|+++. ..||.+++ .|+++|
T Consensus 80 v~gtPt~~~~d~~G~~v~~~~G~~~~~------~l~~~L 112 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYRIPGYLSPE------ELLKML 112 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEESS--HH------HHHHHH
T ss_pred CCccCEEEEEcCCCCEEEEecCCCCHH------HHHhhC
Confidence 999999999999999885 45788765 566654
No 22
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.99 E-value=1.2e-09 Score=101.18 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=74.4
Q ss_pred hhHHhhhhhcCCcEEEE---c----CCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCC
Q 005023 3 RRSFCGGTKTRRTHFLI---N----TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 75 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~y---~----~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~G 75 (718)
+||+..||++.|++++| + ||.|| +++|.||+|.++||+|||.++.|.+.. +.- +.++ ..+..+
T Consensus 7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc----~~~l~~~~v~~~ln~~fv~w~~dv~~~-eg~----~la~-~l~~~~ 76 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFC----RNTLCAPEVIEYINTRMLFWACSVAKP-EGY----RVSQ-ALRERT 76 (116)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCccHHHHH----HHHcCCHHHHHHHHcCEEEEEEecCCh-HHH----HHHH-HhCCCC
Confidence 68999999999999886 3 77777 799999999999999999999999875 321 1222 356789
Q ss_pred CCcEEEeCCCC---ceee-cccccCCCCCCCcccHHHHHHHHH
Q 005023 76 WPLSVFLSPDL---KPLM-GGTYFPPEDKYGRPGFKTILRKVK 114 (718)
Q Consensus 76 wP~~vfl~p~g---~p~~-~~~y~p~~~~~~~~~f~~~L~~i~ 114 (718)
+|+.+|+.|.. +.+. ..||.+++ .|+..|..+.
T Consensus 77 ~P~~~~l~~~~~~~~vv~~i~G~~~~~------~ll~~L~~~~ 113 (116)
T cd02991 77 YPFLAMIMLKDNRMTIVGRLEGLIQPE------DLINRLTFIM 113 (116)
T ss_pred CCEEEEEEecCCceEEEEEEeCCCCHH------HHHHHHHHHH
Confidence 99999996544 3343 34788876 6888887664
No 23
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.97 E-value=2e-08 Score=108.19 Aligned_cols=161 Identities=15% Similarity=0.110 Sum_probs=125.9
Q ss_pred CchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCC
Q 005023 410 DDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG 489 (718)
Q Consensus 410 Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~ 489 (718)
+.-++....| ++.+|...++. ++ ++|++.|++++++|.+...+.+ ..+.|.++.....+
T Consensus 78 ~~dl~~G~aG-~~~~ll~l~~~-~~----------------~~~l~~a~~~~~~l~~~~~~~~---~~~~~~~~~~~~~G 136 (321)
T cd04791 78 NIDLASGLAG-IGLALLYFART-GD----------------PALLEAAAKIAELLAEALERGD---PALLWPDFDRVDHG 136 (321)
T ss_pred CCccccchHH-HHHHHHHHHhc-CC----------------hHHHHHHHHHHHHHHHHhhccc---cccccccCCCCCCc
Confidence 3456677777 44556677777 76 7999999999999998876522 22345455555679
Q ss_pred CcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHH
Q 005023 490 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 569 (718)
Q Consensus 490 ~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~L 569 (718)
+++++|.++.+|+.+|++|+|++|++.|+++.+.+.++|.+. .++++++...+. .....++|++-++.+|
T Consensus 137 ~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~-~~g~~~~~~~~~---------~~~~wchG~aGi~~~l 206 (321)
T cd04791 137 LLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVD-DGGLLQVDEGAR---------LLPYLCSGSAGLGLLM 206 (321)
T ss_pred cccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccC-CCCceEcCCCCc---------cCcccCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999764 456666432211 1236899999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 005023 570 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 604 (718)
Q Consensus 570 lrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~~~p~ 604 (718)
++++++|++ ++|++.++++++.+......+|.
T Consensus 207 ~~l~~~~~d---~~~~~~a~~~~~~~~~~~~~~~~ 238 (321)
T cd04791 207 LRLEAITGD---KRWRDEADGIAHAALSSCYANPG 238 (321)
T ss_pred HHHHHhcCC---HHHHHHHHHHHHHHhhhhccCcc
Confidence 999999985 88999999999998876655554
No 24
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.8e-08 Score=95.36 Aligned_cols=112 Identities=18% Similarity=0.249 Sum_probs=88.5
Q ss_pred hHHhhhhhcCCcEE---EEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCC-CcchH--------HHHHHHHHHhc
Q 005023 4 RSFCGGTKTRRTHF---LINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-RPDVD--------KVYMTYVQALY 71 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii---~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee-~pd~d--------~~y~~~~q~~~ 71 (718)
++.+.|..++|-++ +...|.+|..|.+++|+++++.+++-+||+.+.+|.+- .|.+- -.+...+|. .
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k-f 111 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK-F 111 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH-h
Confidence 56677778877763 36899999999999999999999999999999999743 34221 123333333 5
Q ss_pred CCCCCCcEEEeCCCCceee-cccccCCCCCCCcccHHHHHHHHHHHHhhcHH
Q 005023 72 GGGGWPLSVFLSPDLKPLM-GGTYFPPEDKYGRPGFKTILRKVKDAWDKKRD 122 (718)
Q Consensus 72 g~~GwP~~vfl~p~g~p~~-~~~y~p~~~~~~~~~f~~~L~~i~~~w~~~~~ 122 (718)
++.|+|+.||.+.+|+-|. .-||+||+ .|+.+|+-|++-..++-.
T Consensus 112 ~vrstPtfvFfdk~Gk~Il~lPGY~ppe------~Fl~vlkYVa~g~ykd~~ 157 (182)
T COG2143 112 AVRSTPTFVFFDKTGKTILELPGYMPPE------QFLAVLKYVADGKYKDTK 157 (182)
T ss_pred ccccCceEEEEcCCCCEEEecCCCCCHH------HHHHHHHHHHHHHHhhhc
Confidence 7899999999999999875 56999998 799999999887665544
No 25
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=98.75 E-value=7.5e-08 Score=106.15 Aligned_cols=195 Identities=16% Similarity=0.172 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCC-cchHHH-HHHHHHHHHHHHHccCC-hHHHHHHHHHHHH
Q 005023 207 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHF-EKMLYD-QGQLANVYLDAFSLTKD-VFYSYICRDILDY 283 (718)
Q Consensus 207 ~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~vPHF-EKmLyD-nA~ll~~ya~Ay~~t~~-~~y~~~A~~~~~~ 283 (718)
++.++.+..+.+.+.. +++| -.-||. -||+.. |+++|..|+.++++++. +.|.+.|...++|
T Consensus 473 e~~kkll~e~~e~L~~--aR~k-------------RPkPHLDsKii~sWnGLviSgl~kag~~~~a~~~y~~~a~~~a~f 537 (786)
T KOG2244|consen 473 EKYKKLLGECREKLFD--ARLK-------------RPKPHLDSKIIVSWNGLVISGLAKAGKILKAEPEYTKYAFPVANF 537 (786)
T ss_pred HHHHHHHHHHHHHHHH--Hhhc-------------CCCCCccchheeeccchhhHHHHHHHHHhhcCHHHHHHHHHHHhh
Confidence 4556666667676655 4443 256998 599988 99999999999999875 4999999999999
Q ss_pred HHHhccCCCC-ceeeeccCCcccccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCC
Q 005023 284 LRRDMIGPGG-EIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKG 362 (718)
Q Consensus 284 l~~~m~~p~G-gf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg 362 (718)
+.++|.++.- -|-.. . .|+ .+.|.+ +.
T Consensus 538 l~k~m~d~~eklliR~-----------------s----------------------cY~-ga~g~v------------e~ 565 (786)
T KOG2244|consen 538 LPKDMIDVAEKLLIRG-----------------S----------------------CYD-GASGRV------------EH 565 (786)
T ss_pred hhhhhhchhhhheeec-----------------c----------------------ccc-CCCcce------------ec
Confidence 9999988652 22220 0 010 111221 11
Q ss_pred cceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhccc
Q 005023 363 KNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFN 442 (718)
Q Consensus 363 ~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~ 442 (718)
.| |.-+...|+||+ +++|.+|...|.+.++
T Consensus 566 ~n------------------------------------~~~~~~~FldDY------AFlI~gLLDlYea~~~-------- 595 (786)
T KOG2244|consen 566 SN------------------------------------RPSKAPAFLDDY------AFLISGLLDLYEAGGG-------- 595 (786)
T ss_pred cC------------------------------------CccccchhhhhH------HHHHHHHHHHHHccCc--------
Confidence 11 122345599999 9999999999999987
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccH--------HHHHHHHHHHHHHcCChHHH
Q 005023 443 FPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY--------AFLISGLLDLYEFGSGTKWL 514 (718)
Q Consensus 443 ~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~Dy--------A~li~all~LYeaTgd~~~L 514 (718)
.+||++|+++.+-..+.||| +|+++.+-.++.....+.-+|+ +..+..|+.||.+++.+.|+
T Consensus 596 --------~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl 665 (786)
T KOG2244|consen 596 --------IEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYL 665 (786)
T ss_pred --------hHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHH
Confidence 68999999999999999998 6777777555543333444444 67788999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 005023 515 VWAIELQNTQDELF 528 (718)
Q Consensus 515 ~~A~~L~~~~~~~F 528 (718)
+.|..|+....++.
T Consensus 666 ~ka~~ll~~fseRl 679 (786)
T KOG2244|consen 666 NKAHRLLAVFSERL 679 (786)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999997766544
No 26
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=98.61 E-value=7.9e-06 Score=89.17 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC-CCCCCCC--CcccHH
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPG--FLDDYA 495 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~-g~~~~~~--~l~DyA 495 (718)
.|.+..|+.++..+|| ++|++.|.+-+....++++|+++|.++|.+.. |...... ..=..+
T Consensus 127 ~M~~p~l~~~~~~tgd----------------~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~g 190 (336)
T PF07470_consen 127 YMNLPFLAWAGKLTGD----------------PKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNG 190 (336)
T ss_dssp HHHHHHHHHHHHHHTG----------------HHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHH
T ss_pred cccHHHHHHHHHHHCC----------------cHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhh
Confidence 4578899999999998 89999999999999999999999999988643 3322222 344789
Q ss_pred HHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 005023 496 FLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 570 (718)
Q Consensus 496 ~li~all~LYeaTgd-----~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~Ll 570 (718)
+.+.|++++|+.+.+ +.+++.+.++++.+. .+.+ ++|.|+....+.. .......|+.++++-.|+
T Consensus 191 W~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~-~~q~-~~G~w~~~~~~~~--------~~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 191 WAIYGLAEVLEYLPEDHPERDELLEIAKKLADALA-RYQD-EDGLWYQDLDDPD--------PGNYRETSATAMFAYGLL 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-TTST-TTSBEBSBTTTTT--------TTS-BEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-hcCC-CCCCcceecCCCC--------CCCcccHHHHHHHHHHHH
Confidence 999999999999855 677888888887754 4545 5666665433211 112345688888888887
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005023 571 RLASIVAGSKSDYYRQNAEHSLAVFETR 598 (718)
Q Consensus 571 rL~~lt~~~~~~~y~e~a~~~l~~~~~~ 598 (718)
+.-.. |-...+.|++.|++.++.+...
T Consensus 261 ~gi~~-g~~d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 261 RGIRL-GLLDPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHHT-TSSTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHc-CCCccHHHHHHHHHHHHHHHhC
Confidence 73222 2221478999999999987666
No 27
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=7.5e-06 Score=89.00 Aligned_cols=153 Identities=17% Similarity=0.162 Sum_probs=110.0
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCe-EEEeecCCCCCCCCCccc
Q 005023 415 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDD 493 (718)
Q Consensus 415 t~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~-l~~~~~~g~~~~~~~l~D 493 (718)
..=.++++-|++.++.+.+ ++..++-..+.+.+.+++++.+++. .+....++.. +--.+.
T Consensus 115 ~Y~haFallA~A~~a~a~~-----------------~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~--pl~sNp 175 (388)
T COG2942 115 LYGHAFALLAAAHAATAGP-----------------PRADELLDEALDVLERRFWREEHPLGGFEEDNPGSA--PLGSNP 175 (388)
T ss_pred HHHHHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCC--ccCCCc
Confidence 3345778888888777655 4566667777777888888865432 1111223322 224577
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCc---cccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 005023 494 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 570 (718)
Q Consensus 494 yA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg---~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~Ll 570 (718)
++++.+|+|..|++|++..|++.|.+|++.+..+|.|.++|. +|+... ......+. -+.+|.+...++..|+
T Consensus 176 ~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW---~p~~~frg--~~~ePGH~fEW~~Lll 250 (388)
T COG2942 176 HMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDW---NPAHGFRG--RGIEPGHQFEWAWLLL 250 (388)
T ss_pred chHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccC---CcCCCccc--CCCCCchHHHHHHHHH
Confidence 899999999999999999999999999999999999999985 555433 11111121 2578999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHH
Q 005023 571 RLASIVAGSKSDYYRQNAEHSLAV 594 (718)
Q Consensus 571 rL~~lt~~~~~~~y~e~a~~~l~~ 594 (718)
+++.+.+. ......|+.++..
T Consensus 251 ~~a~~~~~---~~l~~~A~~lf~~ 271 (388)
T COG2942 251 DIARRRGR---AWLIEAARRLFDI 271 (388)
T ss_pred HHHHHhch---hHHHHHHHHHHHH
Confidence 99999885 4566666665554
No 28
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.54 E-value=1.3e-07 Score=90.59 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=57.8
Q ss_pred hHHhhhhhcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhc--ccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 4 RSFCGGTKTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~--~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
..+++|.+++|++|++ +||++|+.|.... + ++++.++. .||.|.||.++.+++.+. +++.|+|+
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l-~--~l~~~~~~~~~~v~v~vd~~~~~~~~~~--------~~V~~iPt 79 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDV-A--KLKQKYGDQVNFVMLNVDNPKWLPEIDR--------YRVDGIPH 79 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHH-H--HHHHHhccCeeEEEEEcCCcccHHHHHH--------cCCCCCCE
Confidence 3567888999999763 8999999998643 2 35555544 467777765544333222 68899999
Q ss_pred EEEeCCCCceeec-ccccC
Q 005023 79 SVFLSPDLKPLMG-GTYFP 96 (718)
Q Consensus 79 ~vfl~p~g~p~~~-~~y~p 96 (718)
++|++++|+++.. .++.+
T Consensus 80 ~v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 80 FVFLDREGNEEGQSIGLQP 98 (142)
T ss_pred EEEECCCCCEEEEEeCCCC
Confidence 9999999999853 34554
No 29
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.40 E-value=5e-07 Score=80.41 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=58.1
Q ss_pred hcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCc
Q 005023 11 KTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 87 (718)
Q Consensus 11 ~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~ 87 (718)
+.+|+++. .+||++|+.|.... .++++.++.++..++||.++.|++... .|+.|.|+.+|+. +|+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~~~l~~~--------~~v~~vPt~~i~~-~g~ 78 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDEDQEIAEA--------AGIMGTPTVQFFK-DKE 78 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHH--------CCCeeccEEEEEE-CCe
Confidence 35777765 38999999998653 568888888899999999998876554 5778999999995 898
Q ss_pred eeecc-cccCC
Q 005023 88 PLMGG-TYFPP 97 (718)
Q Consensus 88 p~~~~-~y~p~ 97 (718)
.+... ++.+.
T Consensus 79 ~v~~~~g~~~~ 89 (97)
T cd02949 79 LVKEISGVKMK 89 (97)
T ss_pred EEEEEeCCccH
Confidence 87543 44443
No 30
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.40 E-value=6.1e-07 Score=101.72 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=68.0
Q ss_pred HHhhhhhcCC--cEEE--E-cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 5 SFCGGTKTRR--THFL--I-NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 5 a~~~Ak~e~K--~ii~--y-~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
.++++.++|| |||. | +||--|++||+.+|+|+.|+.-+. +.|-+++|.+++-..+...++. .|.-|.|+.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~----~~~~G~P~~ 538 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKR----LGVFGVPTY 538 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHH----cCCCCCCEE
Confidence 5666777766 9987 3 999999999999999999998885 6999999998885444444443 788999999
Q ss_pred EEeCCCCceeec
Q 005023 80 VFLSPDLKPLMG 91 (718)
Q Consensus 80 vfl~p~g~p~~~ 91 (718)
+|..++|++...
T Consensus 539 ~ff~~~g~e~~~ 550 (569)
T COG4232 539 LFFGPQGSEPEI 550 (569)
T ss_pred EEECCCCCcCcC
Confidence 999999998765
No 31
>PRK10996 thioredoxin 2; Provisional
Probab=98.25 E-value=2e-06 Score=82.09 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=69.4
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
.+.++...+++|++++ .+||+.|+.|.. .| .++++.++.++..++||.++.|++.+. +|+.|+|+.
T Consensus 42 ~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~~~l~~~--------~~V~~~Ptl 110 (139)
T PRK10996 42 GETLDKLLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAERELSAR--------FRIRSIPTI 110 (139)
T ss_pred HHHHHHHHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCCHHHHHh--------cCCCccCEE
Confidence 4567778888999876 389999999986 56 447788888899999999998877654 678999999
Q ss_pred EEeCCCCceeec-ccccCCCCCCCcccHHHHHHH
Q 005023 80 VFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRK 112 (718)
Q Consensus 80 vfl~p~g~p~~~-~~y~p~~~~~~~~~f~~~L~~ 112 (718)
+|+. +|+++.. .++.+.+ .|.+.|++
T Consensus 111 ii~~-~G~~v~~~~G~~~~e------~l~~~l~~ 137 (139)
T PRK10996 111 MIFK-NGQVVDMLNGAVPKA------PFDSWLNE 137 (139)
T ss_pred EEEE-CCEEEEEEcCCCCHH------HHHHHHHH
Confidence 8885 8998753 3444433 45555543
No 32
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.19 E-value=0.00015 Score=78.25 Aligned_cols=133 Identities=18% Similarity=0.069 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHH
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 498 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li 498 (718)
+=++.+|+++++++++ ++|++.|+++.+++.+++++.++| .+.+ .++.....++....+=++
T Consensus 142 aGi~~~L~~l~~~t~d----------------~~~l~~A~~~~~~~~~~~~~~~~g-~~~~-~~~~~~~~~wchG~aGi~ 203 (321)
T cd04791 142 AGIALFLLRLYKATGD----------------SRYLELAEEALDKELARAVVDDGG-LLQV-DEGARLLPYLCSGSAGLG 203 (321)
T ss_pred HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHhhccCCCC-ceEc-CCCCccCcccCCCcHHHH
Confidence 5578889999999998 899999999999999988765444 3332 223334456778889999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005023 499 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 578 (718)
Q Consensus 499 ~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~ 578 (718)
.+++.+|++|+|++|++.|+++.+.+...++. +- ..-.|.+=.+..|+.++..+++
T Consensus 204 ~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~--~~----------------------~lchG~~G~~~~l~~~~~~~~~ 259 (321)
T cd04791 204 LLMLRLEAITGDKRWRDEADGIAHAALSSCYA--NP----------------------GLFSGTAGLGAHLNDLAAEGDN 259 (321)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcc--Cc----------------------cccCCcHhHHHHHHhhcccccC
Confidence 99999999999999999999999888765421 10 1122334455667778888875
Q ss_pred CCchHHHHHHHHHHHHHH
Q 005023 579 SKSDYYRQNAEHSLAVFE 596 (718)
Q Consensus 579 ~~~~~y~e~a~~~l~~~~ 596 (718)
+.|++.+.++...+.
T Consensus 260 ---~~~~~~~~~~~~~~~ 274 (321)
T cd04791 260 ---ALYKAAAERLALYLI 274 (321)
T ss_pred ---hHHHHHHHHHHHHhc
Confidence 789999887766554
No 33
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.18 E-value=6.3e-06 Score=75.96 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=55.9
Q ss_pred hHHhhhhh--cCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 4 RSFCGGTK--TRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 4 ~a~~~Ak~--e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
+++..+.+ .++++++ .+||+.|+.|+. .| +++++.+.....-+|||+|+.|++.+. +|+.+.|+
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P-~l--e~la~~~~~~v~f~kVDvD~~~~la~~--------~~V~~iPT 71 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDE-VL--AKIAEDVSNFAVIYLVDIDEVPDFNKM--------YELYDPPT 71 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHccCceEEEEEECCCCHHHHHH--------cCCCCCCE
Confidence 34555555 5777765 499999999985 22 345555443334689999999998877 68899999
Q ss_pred EEEeCCCCceeec
Q 005023 79 SVFLSPDLKPLMG 91 (718)
Q Consensus 79 ~vfl~p~g~p~~~ 91 (718)
.+|+. +|+.+..
T Consensus 72 f~~fk-~G~~v~~ 83 (114)
T cd02954 72 VMFFF-RNKHMKI 83 (114)
T ss_pred EEEEE-CCEEEEE
Confidence 98887 8998863
No 34
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.14 E-value=0.00035 Score=80.93 Aligned_cols=241 Identities=17% Similarity=0.170 Sum_probs=144.6
Q ss_pred CCHHHHHHHHHHHHHHHhCCCcccCCCcEEE-Ee------cCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHH
Q 005023 205 EASEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YS------VDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYIC 277 (718)
Q Consensus 205 ~~~~~~~~~~~TL~~m~~gGi~D~v~GGF~R-Ys------vD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A 277 (718)
+|++.++.+...++.+.. --+ ..||.- |. .+..|.. ---.+|...-|+.+..++|+.||++..+++|
T Consensus 77 ~D~~l~~~~d~~V~~l~~--~Q~--~dGYl~~~~~~~~~~~~~~w~~--~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~ 150 (520)
T PF07944_consen 77 GDPELKAKADEIVDELAA--AQQ--PDGYLGTYPEERNFNPDDRWAP--DMHELYCLGKLLEGLIDYYEATGNERALDVA 150 (520)
T ss_pred CCHHHHHHHHHHHHHHHH--hcc--CCceecccccccccccccCCCC--CccceehHhHHHHHHHHHHHHHCcHHHHHHH
Confidence 357888888888888876 222 444432 22 2234544 1234999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCC
Q 005023 278 RDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPH 357 (718)
Q Consensus 278 ~~~~~~l~~~m~~p~Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~ 357 (718)
.+.++|+.+.+.. | +++.+
T Consensus 151 ~k~ad~~~~~~~~----~-------------------------~~~~~-------------------------------- 169 (520)
T PF07944_consen 151 TKLADWVYRRLSR----L-------------------------GPEPG-------------------------------- 169 (520)
T ss_pred HHHHHHHHHHhcc----C-------------------------CHHHh--------------------------------
Confidence 9999999543311 0 00000
Q ss_pred CccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhh
Q 005023 358 NEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAE 437 (718)
Q Consensus 358 ~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~ 437 (718)
+... .+. .+-|..+|++.|+++||
T Consensus 170 -----~~~~-----------------------------------------------~~~-~~~i~~~l~~LY~~Tgd--- 193 (520)
T PF07944_consen 170 -----QKMG-----------------------------------------------YPE-HGGINEALVRLYEITGD--- 193 (520)
T ss_pred -----hccc-----------------------------------------------ccc-cchHHHHHHHHHHHhCC---
Confidence 0000 001 13455889999999998
Q ss_pred hhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC-----CCCCCcccHHHHHHHHHHHHHHcCChH
Q 005023 438 SAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-----KAPGFLDDYAFLISGLLDLYEFGSGTK 512 (718)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~-----~~~~~l~DyA~li~all~LYeaTgd~~ 512 (718)
++||+.|+...+ ...+++. +..+. .+..+ ...+..=-.+++..|..++|++|||++
T Consensus 194 -------------~~yL~lA~~f~~---~~~~~~~-~~~~~--~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~ 254 (520)
T PF07944_consen 194 -------------ERYLDLAEYFVD---QRGFDPY-DLAYG--QDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEE 254 (520)
T ss_pred -------------HHHHHHHHHHHH---HhCCCCC-chhhc--CccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHH
Confidence 899999977654 3343330 00000 11111 111222234678899999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCccccCCCCCCcccccc--ccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 005023 513 WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRV--KEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEH 590 (718)
Q Consensus 513 ~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~--k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~ 590 (718)
|++.++.+++.+.++-.= -+||.-.... .+.....- .......+-...--+.....+|..+||+ ..|.+..|+
T Consensus 255 ~~~a~~~~w~~v~~~~~y-~tGg~g~~~~-~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd---~~yaD~~Er 329 (520)
T PF07944_consen 255 YLDAAENFWDNVVRHHMY-ATGGIGSDHE-GEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTGD---ARYADYYER 329 (520)
T ss_pred HHHHHHHHHHHHHhcCee-ccCCCcCCCC-CccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCCC---chHHHHHHH
Confidence 999999999988764211 2454443310 01111000 0011113333333456667788888886 789998877
Q ss_pred HH
Q 005023 591 SL 592 (718)
Q Consensus 591 ~l 592 (718)
++
T Consensus 330 ~l 331 (520)
T PF07944_consen 330 AL 331 (520)
T ss_pred HH
Confidence 65
No 35
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.05 E-value=8.8e-06 Score=71.78 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=53.5
Q ss_pred cCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCce
Q 005023 12 TRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 88 (718)
Q Consensus 12 e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p 88 (718)
.+|++++ .+||..|+.|... | .++++.++..+..++||.++.+++.+. +++.|+|+++|+. +|++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~l~~~--------~~i~~~Pt~~~~~-~g~~ 78 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPL-L--ERLAEEYQGQFVLAKVNCDAQPQIAQQ--------FGVQALPTVYLFA-AGQP 78 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhCCcEEEEEEeccCCHHHHHH--------cCCCCCCEEEEEe-CCEE
Confidence 3678766 3899999999864 3 567777777788899999998776554 5788999999997 9988
Q ss_pred ee
Q 005023 89 LM 90 (718)
Q Consensus 89 ~~ 90 (718)
+.
T Consensus 79 ~~ 80 (96)
T cd02956 79 VD 80 (96)
T ss_pred ee
Confidence 74
No 36
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.95 E-value=2e-05 Score=69.47 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=57.1
Q ss_pred hHHhhhhhcC--CcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 4 RSFCGGTKTR--RTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 4 ~a~~~Ak~e~--K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
+.++.+..++ |++++ .+||++|+.|.. +| .++++.++.++..++||.++.|++.+. ++..|.|+
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~-~l--~~l~~~~~~~i~~~~vd~~~~~~~~~~--------~~i~~~Pt 71 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQ-VF--EELAKEAFPSVLFLSIEAEELPEISEK--------FEITAVPT 71 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhH-HH--HHHHHHhCCceEEEEEccccCHHHHHh--------cCCccccE
Confidence 3455555555 88865 399999999986 45 356666577899999999988776554 57889999
Q ss_pred EEEeCCCCceeec
Q 005023 79 SVFLSPDLKPLMG 91 (718)
Q Consensus 79 ~vfl~p~g~p~~~ 91 (718)
.+|+. +|+++..
T Consensus 72 ~~~~~-~g~~~~~ 83 (97)
T cd02984 72 FVFFR-NGTIVDR 83 (97)
T ss_pred EEEEE-CCEEEEE
Confidence 99995 8998753
No 37
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.95 E-value=0.0014 Score=70.20 Aligned_cols=271 Identities=16% Similarity=0.125 Sum_probs=167.5
Q ss_pred HHhcccccCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCC
Q 005023 164 LSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWH 243 (718)
Q Consensus 164 l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~ 243 (718)
+.++++...|=....=-+|....|.=+.+.+..++ +++.++.+....+.-.. .|||-+|++|.
T Consensus 19 ~~~~~~~r~~~~~~~Wdwe~GV~lyGv~~~~eAT~-------d~~yl~~l~~~~d~~i~-------~~g~~~~~id~--- 81 (357)
T COG4225 19 MIDRIIARTGPTKDRWDWEQGVFLYGVARAYEATG-------DAEYLDYLKTWFDEQID-------EGGLPPRNIDH--- 81 (357)
T ss_pred HHHHHHHhhCCCCccccccccchHHHHHHHHHHcC-------cHHHHHHHHHHHHhhhc-------cCCCCccchhh---
Confidence 33333333333233445677777776667666543 46777766655443322 24466666652
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceEeechH
Q 005023 244 VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSK 323 (718)
Q Consensus 244 vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~ 323 (718)
-+.-..+.-.|..|+||.|+..|.+..+|+..+++-.+|||..-.
T Consensus 82 -----------i~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~------------------------ 126 (357)
T COG4225 82 -----------IAAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKV------------------------ 126 (357)
T ss_pred -----------hccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCcccccc------------------------
Confidence 112223455688899999999999999999999987788884410
Q ss_pred HHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcc
Q 005023 324 EVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSK 403 (718)
Q Consensus 324 Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~ 403 (718)
+| .++.+
T Consensus 127 ----------------------~~------------------p~Q~W--------------------------------- 133 (357)
T COG4225 127 ----------------------KY------------------PHQMW--------------------------------- 133 (357)
T ss_pred ----------------------Cc------------------hhHhh---------------------------------
Confidence 00 00000
Q ss_pred CCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCC
Q 005023 404 RPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG 483 (718)
Q Consensus 404 R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g 483 (718)
.|.- -|...-+++.++++++ ++|++.+..-+.--.+++.||++|.+||.|...
T Consensus 134 -----~DtL------~Ma~~F~ak~g~~~~~----------------~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~ 186 (357)
T COG4225 134 -----LDTL------YMAGLFLAKYGQVTGR----------------PEYFDEALYQFSLHEKYLRDPETGLYYHGWDED 186 (357)
T ss_pred -----hcch------hhhhHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHHccCCCcCceEEeeccC
Confidence 1111 2345567889999997 899999998888888999999999999997433
Q ss_pred C-----CCCC---CCc-ccHHHHHHHHHHHHHHcCChH-----HHHHHHHHHHHHHHhcccccCCccccCCCCCCccccc
Q 005023 484 P-----SKAP---GFL-DDYAFLISGLLDLYEFGSGTK-----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLR 549 (718)
Q Consensus 484 ~-----~~~~---~~l-~DyA~li~all~LYeaTgd~~-----~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r 549 (718)
. .... .|+ -..++++.++.++.+.-.+.. +.+.-..+.+.+.. .-| ++|-|+..-. ++ |
T Consensus 187 ~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r-~Qd-e~GlW~tiLD-d~----~ 259 (357)
T COG4225 187 GTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIR-YQD-ESGLWHTILD-DG----R 259 (357)
T ss_pred CCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH-hhc-cccchhhhhc-cC----C
Confidence 2 1111 222 145678888888887754332 33444444444443 335 6676665322 21 2
Q ss_pred cccCCCCCCCChHHHHHHHHHH---HHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 005023 550 VKEDHDGAEPSGNSVSVINLVR---LASIVAGSKSDYYRQNAEHSLAVFETRLKD 601 (718)
Q Consensus 550 ~k~~~D~a~PS~ns~~a~~Llr---L~~lt~~~~~~~y~e~a~~~l~~~~~~i~~ 601 (718)
+ ....+-|+.+..|-+|++ ++-+. ++|...+++.++.+...+..
T Consensus 260 ~---~sy~EsSaSa~faYallkgi~~G~l~-----~~~~~~~~kA~~aLl~~i~~ 306 (357)
T COG4225 260 P---GSYLESSASAGFAYALLKGINLGILD-----PEYAPVAEKALDALLGHIDE 306 (357)
T ss_pred C---CCchhhhHHHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHHHHhhccc
Confidence 2 124667888888888887 55443 46778888888887666644
No 38
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.93 E-value=2.4e-05 Score=74.88 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=56.4
Q ss_pred hHHhhhhh--cCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEE-EEecCCCCcchHHHHHHHHHHhcCCCCCC
Q 005023 4 RSFCGGTK--TRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVDKVYMTYVQALYGGGGWP 77 (718)
Q Consensus 4 ~a~~~Ak~--e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~-vkvD~ee~pd~d~~y~~~~q~~~g~~GwP 77 (718)
+.+.++.+ ++|++++ .+||+.|+.|+. .| +++++.+.. ++. +|||.++.|++.+. +++.+.|
T Consensus 12 ~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p-~l--~~la~~~~~-~~~~~kVDVDe~~dla~~--------y~I~~~~ 79 (142)
T PLN00410 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDE-VL--ASVAETIKN-FAVIYLVDITEVPDFNTM--------YELYDPC 79 (142)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHcCC-ceEEEEEECCCCHHHHHH--------cCccCCC
Confidence 34455553 6888754 599999999985 44 457777654 455 89999999999887 5667888
Q ss_pred cEEEeCCCCc-eeecc
Q 005023 78 LSVFLSPDLK-PLMGG 92 (718)
Q Consensus 78 ~~vfl~p~g~-p~~~~ 92 (718)
+++|+-.+|+ .+..+
T Consensus 80 t~~~ffk~g~~~vd~~ 95 (142)
T PLN00410 80 TVMFFFRNKHIMIDLG 95 (142)
T ss_pred cEEEEEECCeEEEEEe
Confidence 8887777888 55444
No 39
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.86 E-value=3.6e-05 Score=70.72 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=50.2
Q ss_pred cCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCce
Q 005023 12 TRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 88 (718)
Q Consensus 12 e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p 88 (718)
++|+|++ .+||..|+.|+. .| +++++.+.+.-+-.|||++|.||+.+. ++....|+++|+- +|+-
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp-~l--~ela~~~~~~~~f~kVDVDev~dva~~--------y~I~amPtfvffk-ngkh 80 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDD-IL--SKTSHDLSKMASIYLVDVDKVPVYTQY--------FDISYIPSTIFFF-NGQH 80 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHH-HH--HHHHHHccCceEEEEEeccccHHHHHh--------cCceeCcEEEEEE-CCcE
Confidence 6888854 699999999985 33 345555532266789999999999886 5667789999665 7776
Q ss_pred ee
Q 005023 89 LM 90 (718)
Q Consensus 89 ~~ 90 (718)
+.
T Consensus 81 ~~ 82 (114)
T cd02986 81 MK 82 (114)
T ss_pred EE
Confidence 63
No 40
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.85 E-value=5e-05 Score=67.11 Aligned_cols=75 Identities=24% Similarity=0.396 Sum_probs=57.9
Q ss_pred hHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc--ccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 4 RSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~--~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
+.+++..++++++|+ .+||+-|+.|.. .| .++++.+.. ++..++||.++.+++.+. +|..++|+
T Consensus 4 ~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~-~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------~~i~~~P~ 72 (102)
T TIGR01126 4 SNFDDIVLSNKDVLVEFYAPWCGHCKNLAP-EY--EKLAKELKGDPDIVLAKVDATAEKDLASR--------FGVSGFPT 72 (102)
T ss_pred hhHHHHhccCCcEEEEEECCCCHHHHhhCh-HH--HHHHHHhccCCceEEEEEEccchHHHHHh--------CCCCcCCE
Confidence 456667678888765 389999999974 45 457777776 688899999988766544 57789999
Q ss_pred EEEeCCCCcee
Q 005023 79 SVFLSPDLKPL 89 (718)
Q Consensus 79 ~vfl~p~g~p~ 89 (718)
.+|+++++.+.
T Consensus 73 ~~~~~~~~~~~ 83 (102)
T TIGR01126 73 IKFFPKGKKPV 83 (102)
T ss_pred EEEecCCCcce
Confidence 99999887643
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.84 E-value=6.8e-05 Score=65.90 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=57.3
Q ss_pred hhHHhhhhhc-CCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 3 RRSFCGGTKT-RRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 3 ~~a~~~Ak~e-~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
.+.+.+..++ +|++++ ..||+.|+.|.. .| .++++.++.+...++||.++.+.+-+. +|..++|+
T Consensus 3 ~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~-~l--~~~~~~~~~~~~~~~vd~~~~~~~~~~--------~~v~~~P~ 71 (101)
T TIGR01068 3 DANFDETIASSDKPVLVDFWAPWCGPCKMIAP-IL--EELAKEYEGKVKFVKLNVDENPDIAAK--------YGIRSIPT 71 (101)
T ss_pred HHHHHHHHhhcCCcEEEEEECCCCHHHHHhCH-HH--HHHHHHhcCCeEEEEEECCCCHHHHHH--------cCCCcCCE
Confidence 3455565555 557765 389999999985 45 477778888899999999988765433 57889999
Q ss_pred EEEeCCCCceee
Q 005023 79 SVFLSPDLKPLM 90 (718)
Q Consensus 79 ~vfl~p~g~p~~ 90 (718)
.+|+ ++|++..
T Consensus 72 ~~~~-~~g~~~~ 82 (101)
T TIGR01068 72 LLLF-KNGKEVD 82 (101)
T ss_pred EEEE-eCCcEee
Confidence 9999 7888764
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.81 E-value=4.1e-05 Score=68.85 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=52.5
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc---ccEEEEecCCCCcchHHHHHHHHHHhcCCCCC
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 76 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~---~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~Gw 76 (718)
+++++++++ ++++++ .+||..|+.|.. .|+ ++++.++. ++...++|.++.|++.+. +++.+.
T Consensus 6 ~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~~~~~~~~--------~~I~~~ 73 (104)
T cd03000 6 DDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATAYSSIASE--------FGVRGY 73 (104)
T ss_pred hhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECccCHhHHhh--------cCCccc
Confidence 466777755 566655 389999999996 465 56666643 466778999888776544 678899
Q ss_pred CcEEEeCCCCce
Q 005023 77 PLSVFLSPDLKP 88 (718)
Q Consensus 77 P~~vfl~p~g~p 88 (718)
|+++|+. +|.+
T Consensus 74 Pt~~l~~-~~~~ 84 (104)
T cd03000 74 PTIKLLK-GDLA 84 (104)
T ss_pred cEEEEEc-CCCc
Confidence 9999994 4443
No 43
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.77 E-value=7e-05 Score=67.34 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=53.2
Q ss_pred hHHhhhhhcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcc-cEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 4 RSFCGGTKTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~-Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
+.++.+.+++++++++ +||..|+.|.. .| .++++.+... ...++||.+ .+++.+. +++.+.|+.
T Consensus 8 ~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p-~l--~~~~~~~~~~~~~~~~vd~d-~~~~~~~--------~~v~~~Pt~ 75 (102)
T cd02948 8 EEWEELLSNKGLTVVDVYQEWCGPCKAVVS-LF--KKIKNELGDDLLHFATAEAD-TIDTLKR--------YRGKCEPTF 75 (102)
T ss_pred HHHHHHHccCCeEEEEEECCcCHhHHHHhH-HH--HHHHHHcCCCcEEEEEEeCC-CHHHHHH--------cCCCcCcEE
Confidence 4567777889998763 89999999986 45 4466666543 456778887 4443322 678999987
Q ss_pred EEeCCCCceeec
Q 005023 80 VFLSPDLKPLMG 91 (718)
Q Consensus 80 vfl~p~g~p~~~ 91 (718)
+|+ .+|+++..
T Consensus 76 ~~~-~~g~~~~~ 86 (102)
T cd02948 76 LFY-KNGELVAV 86 (102)
T ss_pred EEE-ECCEEEEE
Confidence 777 58998753
No 44
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.74 E-value=8.1e-05 Score=66.15 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=53.5
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhh--cccEEEEecCCC--CcchHHHHHHHHHHhcCCCC
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE--RPDVDKVYMTYVQALYGGGG 75 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln--~~Fv~vkvD~ee--~pd~d~~y~~~~q~~~g~~G 75 (718)
+..++.+.++++++++ .+||+.|+.|.... .++++.+. .+++.++||.++ .+.+.+. .|..+
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~--------~~i~~ 75 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEE--------YNVKG 75 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHh--------CCCcc
Confidence 3457777788888765 38999999998654 35566665 568888999887 4433222 57889
Q ss_pred CCcEEEeCCCCcee
Q 005023 76 WPLSVFLSPDLKPL 89 (718)
Q Consensus 76 wP~~vfl~p~g~p~ 89 (718)
.|+.+|+ ++|++.
T Consensus 76 ~Pt~~~~-~~g~~~ 88 (104)
T cd02997 76 FPTFKYF-ENGKFV 88 (104)
T ss_pred ccEEEEE-eCCCee
Confidence 9997766 478765
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.73 E-value=8.4e-05 Score=64.76 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=59.1
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHh--hcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCC
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 77 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~l--n~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP 77 (718)
.+.+..+.++++++++ .+||++|+.|.. .| .++++.+ +.++..++||.++.+.+.+. +|+.++|
T Consensus 5 ~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~i~~~P 73 (101)
T cd02961 5 DDNFDELVKDSKDVLVEFYAPWCGHCKALAP-EY--EKLAKELKGDGKVVVAKVDCTANNDLCSE--------YGVRGYP 73 (101)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhhhH-HH--HHHHHHhccCCceEEEEeeccchHHHHHh--------CCCCCCC
Confidence 3567788888877755 389999999985 44 4577778 57899999999987666554 5788999
Q ss_pred cEEEeCCCCcee
Q 005023 78 LSVFLSPDLKPL 89 (718)
Q Consensus 78 ~~vfl~p~g~p~ 89 (718)
+.+++.++|+..
T Consensus 74 t~~~~~~~~~~~ 85 (101)
T cd02961 74 TIKLFPNGSKEP 85 (101)
T ss_pred EEEEEcCCCccc
Confidence 999999886433
No 46
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.70 E-value=0.0014 Score=65.67 Aligned_cols=144 Identities=18% Similarity=0.235 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC-C-----CC--CCCC
Q 005023 418 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-G-----PS--KAPG 489 (718)
Q Consensus 418 Ngl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~-g-----~~--~~~~ 489 (718)
+|.+|+.|++|+.+++| ++|+++|+++++...... +.|++...+.+ + =+ ...-
T Consensus 32 QG~a~s~l~RAy~~t~d----------------~~Yl~aA~~al~~f~~~~---~~GG~~~~~~~~~~wyeEYp~~p~s~ 92 (189)
T PF06662_consen 32 QGQAISVLARAYQLTGD----------------EKYLDAAKKALNSFKVPV---EEGGVLATFKNKYPWYEEYPTTPPSY 92 (189)
T ss_pred HHHHHHHHHHHHHhHCC----------------HHHHHHHHHHHHHhcChH---hhCCeeEEecCCcEeEeecCCCCCCE
Confidence 47789999999999998 899999999998765433 23555544433 2 12 2235
Q ss_pred CcccHHHHHHHHHHHHHHcCChHHH---HHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHH
Q 005023 490 FLDDYAFLISGLLDLYEFGSGTKWL---VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 566 (718)
Q Consensus 490 ~l~DyA~li~all~LYeaTgd~~~L---~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a 566 (718)
.|+.+.+.+.||-+++..|++.+.. +...+.++.++..| |...+.+|+-..- ... ..-.-+-+.=-.+.+
T Consensus 93 VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~y-D~G~wS~Ydl~h~----~~~--~~~~~a~~~YH~lHi 165 (189)
T PF06662_consen 93 VLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLY-DTGSWSRYDLRHF----TLG--NAPNIARWDYHRLHI 165 (189)
T ss_pred EeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhcccc----ccc--cCcCcCcchHHHHHH
Confidence 7889999999999999999988764 44555555565555 6544456663210 000 000112233345788
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHH
Q 005023 567 INLVRLASIVAGSKSDYYRQNAEH 590 (718)
Q Consensus 567 ~~LlrL~~lt~~~~~~~y~e~a~~ 590 (718)
..|..|+.+|++ +.+++.|++
T Consensus 166 ~qL~~L~~it~d---~~f~~~a~r 186 (189)
T PF06662_consen 166 QQLKWLYSITGD---PIFKEYAER 186 (189)
T ss_pred HHHHHHHHhcCC---HHHHHHHHH
Confidence 889999999985 788877754
No 47
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.68 E-value=0.0032 Score=68.80 Aligned_cols=241 Identities=16% Similarity=0.160 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCcchHHHHH-HHHHHHHHHHHccCChHHHHHHHHHHHHH
Q 005023 206 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQG-QLANVYLDAFSLTKDVFYSYICRDILDYL 284 (718)
Q Consensus 206 ~~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA-~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l 284 (718)
+++.++.+...++.+.. ..+....|||.+...... .+..|+- ..+..++.++..|+|+.|.+.|.+-+...
T Consensus 85 d~~y~~~~~~~a~~~l~-~~~~~~~G~~~~~~~~~~-------~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~ 156 (336)
T PF07470_consen 85 DEKYKDAAIQAADWLLA-RRPRTSDGGFWHNRPYPN-------QVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLT 156 (336)
T ss_dssp THHHHHHHHHHHHHHHH-TSCBECTGCBECTTTSTT-------EEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-hCCCCCCCccccCCCCCC-------ceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 58899999999994443 255545789886222223 3336766 47888999999999999999887777777
Q ss_pred HHhccCCC-CceeeeccCCcccccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCc
Q 005023 285 RRDMIGPG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGK 363 (718)
Q Consensus 285 ~~~m~~p~-Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~ 363 (718)
.+.+.+|+ |-|+...+.+.. ..++-..|+.
T Consensus 157 ~~~~~d~~tGl~~h~~~~~~~--------~~~s~~~WsR----------------------------------------- 187 (336)
T PF07470_consen 157 RKYLYDPETGLYYHGYTYQGY--------ADWSDSFWSR----------------------------------------- 187 (336)
T ss_dssp HHHHB-TTTSSBESEEETTSS--------STTST--BHH-----------------------------------------
T ss_pred HHhccCCCCCceeeccCCCCC--------cCcccccCcc-----------------------------------------
Confidence 77788876 667676655431 0001122321
Q ss_pred ceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccC
Q 005023 364 NVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNF 443 (718)
Q Consensus 364 nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~ 443 (718)
-||.++.+|++.++.+.+..+.
T Consensus 188 -----------------------------------------------------G~gW~~~Gl~~~l~~lp~~~~~----- 209 (336)
T PF07470_consen 188 -----------------------------------------------------GNGWAIYGLAEVLEYLPEDHPE----- 209 (336)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHTTHHH-----
T ss_pred -----------------------------------------------------hhhHHHHHHHHHHHHhcchhhh-----
Confidence 3799999999999998541111
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCccc--HHHHHHHHHHHHHHc--CChHHHHHHHH
Q 005023 444 PVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD--YAFLISGLLDLYEFG--SGTKWLVWAIE 519 (718)
Q Consensus 444 ~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~D--yA~li~all~LYeaT--gd~~~L~~A~~ 519 (718)
++.+++.++++++++.+ +.+ ++|..+....+.. ...+.|- -|.++.||+...+.. .++.|+..|++
T Consensus 210 ------~~~~~~~~~~~~~~l~~-~q~-~~G~w~~~~~~~~--~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~ 279 (336)
T PF07470_consen 210 ------RDELLEIAKKLADALAR-YQD-EDGLWYQDLDDPD--PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEK 279 (336)
T ss_dssp ------HHHHHHHHHHHHHHHHT-TST-TTSBEBSBTTTTT--TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHh-cCC-CCCCcceecCCCC--CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 26789999999988764 444 4565444444433 1223333 356777776633332 26789999999
Q ss_pred HHHHHHHhcccccCCc--cccCCCCCC-cc-ccccccCCCCCCCChHHHHHHHHHHHHHH
Q 005023 520 LQNTQDELFLDREGGG--YFNTTGEDP-SV-LLRVKEDHDGAEPSGNSVSVINLVRLASI 575 (718)
Q Consensus 520 L~~~~~~~F~D~~~Gg--~f~t~~~~~-~l-~~r~k~~~D~a~PS~ns~~a~~LlrL~~l 575 (718)
.++.+.++..++ +|. +.......+ .- ..++. ....|-|.+..+.++.++.++
T Consensus 280 a~~~l~~~~~~~-dG~~~~~~~~~~~~~~~Y~~~~~---~~~~~~G~g~fl~A~~e~~r~ 335 (336)
T PF07470_consen 280 ALEALLSNAIDP-DGKLGLKGVCGGTPVGGYQGRDY---NVNDPYGDGYFLLALAEYERL 335 (336)
T ss_dssp HHHHHHHCEB-T-TSSSBBTCEBETTTS-SHHTEEE---ECCSHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhCccCC-CCCeEEeeeEeecCCCCCCCCCC---CCCcCcHHHHHHHHHHHHHHh
Confidence 999999883344 343 333322211 00 11111 122356777777777666543
No 48
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.66 E-value=0.00016 Score=65.15 Aligned_cols=68 Identities=12% Similarity=0.018 Sum_probs=48.1
Q ss_pred CCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 13 RRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 13 ~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
+|++++ .+||..|+.|.. .|+ ++++.. .+.+-++||.++.++...+-.+ +++.|.|+.+|+ .+|+.+
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p-~l~--~la~~~-~~v~~~~vd~d~~~~~~~l~~~-----~~V~~~Pt~~~~-~~G~~v 84 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYP-TMV--KLSRTC-NDVVFLLVNGDENDSTMELCRR-----EKIIEVPHFLFY-KDGEKI 84 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhH-HHH--HHHHHC-CCCEEEEEECCCChHHHHHHHH-----cCCCcCCEEEEE-eCCeEE
Confidence 888876 489999999873 333 244444 4577899999987644333222 588999998877 799987
Q ss_pred e
Q 005023 90 M 90 (718)
Q Consensus 90 ~ 90 (718)
.
T Consensus 85 ~ 85 (103)
T cd02985 85 H 85 (103)
T ss_pred E
Confidence 4
No 49
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.65 E-value=0.00011 Score=65.60 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=57.0
Q ss_pred hHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEE
Q 005023 4 RSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 80 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~v 80 (718)
+-+++..++++++++ .+||..|+.|.. .|+ ++++.+..++.-++||.++.|++.+. .++.+.|+.+
T Consensus 9 ~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~vd~~~~~~~~~~--------~~v~~~Pt~~ 77 (101)
T cd03003 9 GDFDAAVNSGEIWFVNFYSPRCSHCHDLAP-TWR--EFAKEMDGVIRIGAVNCGDDRMLCRS--------QGVNSYPSLY 77 (101)
T ss_pred hhHHHHhcCCCeEEEEEECCCChHHHHhHH-HHH--HHHHHhcCceEEEEEeCCccHHHHHH--------cCCCccCEEE
Confidence 345666677788866 389999999985 454 47788887777889999998776544 5778999998
Q ss_pred EeCCCCcee
Q 005023 81 FLSPDLKPL 89 (718)
Q Consensus 81 fl~p~g~p~ 89 (718)
++ ++|++.
T Consensus 78 ~~-~~g~~~ 85 (101)
T cd03003 78 VF-PSGMNP 85 (101)
T ss_pred EE-cCCCCc
Confidence 88 688765
No 50
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.62 E-value=0.00015 Score=66.03 Aligned_cols=74 Identities=15% Similarity=0.358 Sum_probs=54.5
Q ss_pred HHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc-ccEEEEecCCCC-cchHHHHHHHHHHhcCCCCCCcE
Q 005023 5 SFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 5 a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~-~Fv~vkvD~ee~-pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
++.++++++|++|+ .+||..|+.|... | .++++.+.. +|+..+||.++. .++ ++..++..++|+.
T Consensus 13 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~~~~~-------~~~~~~v~~~Pti 82 (109)
T cd02993 13 ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGEQREF-------AKEELQLKSFPTI 82 (109)
T ss_pred HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCccchhh-------HHhhcCCCcCCEE
Confidence 45566778899866 3899999999875 5 357777875 488899998873 222 2223678899999
Q ss_pred EEeCCCCce
Q 005023 80 VFLSPDLKP 88 (718)
Q Consensus 80 vfl~p~g~p 88 (718)
+|+.++++.
T Consensus 83 ~~f~~~~~~ 91 (109)
T cd02993 83 LFFPKNSRQ 91 (109)
T ss_pred EEEcCCCCC
Confidence 999887653
No 51
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.62 E-value=0.0055 Score=75.02 Aligned_cols=252 Identities=19% Similarity=0.257 Sum_probs=150.0
Q ss_pred ecCCCCCCCCCcchHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-----CCceeeeccCCcccccCcc
Q 005023 237 SVDERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-----GGEIFSAEDADSAETEGAT 310 (718)
Q Consensus 237 svD~~W~vPHFEKmLyD-nA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p-----~Ggf~sa~DADs~~~~~~~ 310 (718)
..+..|.+-.-.=-||+ -|-++.+|+..|++|+++.|.+.|+++++.+...+... +-|+|+
T Consensus 475 ~~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~------------- 541 (825)
T cd04792 475 SDGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFS------------- 541 (825)
T ss_pred cCCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEe-------------
Confidence 33446765456667888 89999999999999999999999999999988766432 112222
Q ss_pred cccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHH
Q 005023 311 RKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNIL 390 (718)
Q Consensus 311 ~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l 390 (718)
|.-|-.|+. ..+...++ .++..+.+
T Consensus 542 -G~aGi~~~L--~~l~~~~~----------------------------------------------------~~~~~~~a 566 (825)
T cd04792 542 -GLGGILYAL--THLGKLLK----------------------------------------------------DDRLLNLA 566 (825)
T ss_pred -chhHHHHHH--HHHHHHcC----------------------------------------------------CHHHHHHH
Confidence 111221111 11111111 01111222
Q ss_pred HHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 005023 391 GECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD 470 (718)
Q Consensus 391 ~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d 470 (718)
..+.+.+.+.-. +...--++.++-| ++.+|...++.+++ +.+++.|+++++++.+....
T Consensus 567 ~~~~~~l~~~~~----~~~~~D~~~G~aG-ii~~Ll~l~~~~~~----------------~~~l~~a~~~~~~l~~~~~~ 625 (825)
T cd04792 567 KEILDLIDELIE----KDEKLDFISGAAG-LILVLLSLYELFLS----------------ERFLDLALKCGDHLLENASN 625 (825)
T ss_pred HHHHHHHHHhhc----cccCCCEeeecHH-HHHHHHHHHhccCC----------------hHHHHHHHHHHHHHHHhhhh
Confidence 222222222111 1112234444444 45667788888876 78999999999999876543
Q ss_pred cCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccccc
Q 005023 471 EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRV 550 (718)
Q Consensus 471 ~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~ 550 (718)
.+.+ .+ ..+.....++....+=.+.+|+.+|++|++++|++.|.++.+.....| ++..+.|.. ....
T Consensus 626 ~~~~-~~---~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~-~~~~~~w~~--~~~~------ 692 (825)
T cd04792 626 EDGG-IG---PAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLF-SEEGWNWPR--KDGN------ 692 (825)
T ss_pred ccCC-cc---cccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc-CHhhcCCCC--cCcC------
Confidence 2222 22 122233458888899999999999999999999999999998766555 333344431 1100
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHH
Q 005023 551 KEDHDGAEPSGNSVSVINLVRLASI--VAGSKSDYYRQNAEHSLAVF 595 (718)
Q Consensus 551 k~~~D~a~PS~ns~~a~~LlrL~~l--t~~~~~~~y~e~a~~~l~~~ 595 (718)
.....--.|.+=.+..+++++.. +++ +.+.+.++.++...
T Consensus 693 --~~~~~WChG~~GI~lal~~~~~~~~~~d---~~~~~~i~~~~~~~ 734 (825)
T cd04792 693 --SFSAAWCHGAPGILLARLELLKFNDLDD---EELKEEIEIALKTT 734 (825)
T ss_pred --CCCCcccCCcHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHH
Confidence 00111223444456677778887 443 66777777666654
No 52
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.61 E-value=0.00017 Score=65.19 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=55.8
Q ss_pred chhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc------ccEEEEecCCCCcchHHHHHHHHHHhcC
Q 005023 2 GRRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYG 72 (718)
Q Consensus 2 ~~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~------~Fv~vkvD~ee~pd~d~~y~~~~q~~~g 72 (718)
..+.+++..++++++++ .+||..|+.|... |+ ++++.+++ .+..++||.++.+++.+. +|
T Consensus 7 ~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~-~~--~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~--------~~ 75 (108)
T cd02996 7 TSGNIDDILQSAELVLVNFYADWCRFSQMLHPI-FE--EAAAKIKEEFPDAGKVVWGKVDCDKESDIADR--------YR 75 (108)
T ss_pred CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHH-HH--HHHHHHhhccCCCCcEEEEEEECCCCHHHHHh--------CC
Confidence 34567788888898865 3899999999863 54 45555543 367789999998765443 68
Q ss_pred CCCCCcEEEeCCCCce
Q 005023 73 GGGWPLSVFLSPDLKP 88 (718)
Q Consensus 73 ~~GwP~~vfl~p~g~p 88 (718)
+.++|+.+|+ ++|+.
T Consensus 76 v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 76 INKYPTLKLF-RNGMM 90 (108)
T ss_pred CCcCCEEEEE-eCCcC
Confidence 8999999888 68874
No 53
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.61 E-value=8.6e-05 Score=67.91 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=51.8
Q ss_pred hcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc-ccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCC
Q 005023 11 KTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 86 (718)
Q Consensus 11 ~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~-~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g 86 (718)
..+|++++ .+||..|+.|.. .|+ ++++.+.. ++.-++||.++.+++.+. .|+.+.|+++|+. +|
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p-~~~--~l~~~~~~~~v~~~~vd~d~~~~l~~~--------~~V~~~Pt~~i~~-~g 89 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEP-VWK--EVIQELEPLGVGIATVNAGHERRLARK--------LGAHSVPAIVGII-NG 89 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhH-HHH--HHHHHHHhcCceEEEEeccccHHHHHH--------cCCccCCEEEEEE-CC
Confidence 35788876 389999999986 354 67777754 477789999887665443 5889999999884 88
Q ss_pred ceee
Q 005023 87 KPLM 90 (718)
Q Consensus 87 ~p~~ 90 (718)
+...
T Consensus 90 ~~~~ 93 (111)
T cd02963 90 QVTF 93 (111)
T ss_pred EEEE
Confidence 8764
No 54
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.60 E-value=0.00014 Score=61.99 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=51.6
Q ss_pred HhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEe
Q 005023 6 FCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 82 (718)
Q Consensus 6 ~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl 82 (718)
++.+.++++++|. .+||++|+.|.+ .+ .++++. +.++..++||.++.+++... ++..++|+.+++
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~-~~--~~~~~~-~~~~~~~~i~~~~~~~~~~~--------~~v~~~P~~~~~ 70 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAP-VL--EELAEE-YPKVKFVKVDVDENPELAEE--------YGVRSIPTFLFF 70 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhH-HH--HHHHHH-CCCceEEEEECCCChhHHHh--------cCcccccEEEEE
Confidence 5566666678654 489999999885 33 333434 57788889999987666554 577899999888
Q ss_pred CCCCceee
Q 005023 83 SPDLKPLM 90 (718)
Q Consensus 83 ~p~g~p~~ 90 (718)
. +|+++.
T Consensus 71 ~-~g~~~~ 77 (93)
T cd02947 71 K-NGKEVD 77 (93)
T ss_pred E-CCEEEE
Confidence 5 667553
No 55
>PHA02278 thioredoxin-like protein
Probab=97.55 E-value=0.00016 Score=65.48 Aligned_cols=82 Identities=7% Similarity=0.104 Sum_probs=52.7
Q ss_pred hHHhhhhhcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCC----cchHHHHHHHHHHhcCCCCC
Q 005023 4 RSFCGGTKTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER----PDVDKVYMTYVQALYGGGGW 76 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~----pd~d~~y~~~~q~~~g~~Gw 76 (718)
+-+.+..+++++++++ +||+.|+.|.. +|+ ++++..+.....+|||.++. +++.+. +++.|+
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p-~l~--~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~--------~~I~~i 73 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKS-VIP--MFQESGDIKKPILTLNLDAEDVDREKAVKL--------FDIMST 73 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHH-HHH--HHHhhhcCCceEEEEECCccccccHHHHHH--------CCCccc
Confidence 4566666788998773 89999999995 332 23333333222466776664 444443 678899
Q ss_pred CcEEEeCCCCceeecc-cccCC
Q 005023 77 PLSVFLSPDLKPLMGG-TYFPP 97 (718)
Q Consensus 77 P~~vfl~p~g~p~~~~-~y~p~ 97 (718)
|+.+|+. +|+.+... ++.++
T Consensus 74 PT~i~fk-~G~~v~~~~G~~~~ 94 (103)
T PHA02278 74 PVLIGYK-DGQLVKKYEDQVTP 94 (103)
T ss_pred cEEEEEE-CCEEEEEEeCCCCH
Confidence 9998887 78888533 44443
No 56
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.54 E-value=0.0003 Score=65.68 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=50.6
Q ss_pred hHHhhhhhcCCcE---EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHH--HHHHHHHHh---cCCCC
Q 005023 4 RSFCGGTKTRRTH---FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK--VYMTYVQAL---YGGGG 75 (718)
Q Consensus 4 ~a~~~Ak~e~K~i---i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~--~y~~~~q~~---~g~~G 75 (718)
+.+.+..++++.+ |+.+||+||+.|...- .++++.-+..|+-|.+|.+..+++.+ .+..+.+.. ++..|
T Consensus 14 ~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l---~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 14 VRALEALDKKETATFFIGRKTCPYCRKFSGTL---SGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred HHHHHHHHcCCcEEEEEECCCChhHHHHhHHH---HHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 3455555667764 4569999999998422 34444433346666666554444331 233333332 45778
Q ss_pred CCcEEEeCCCCceeec
Q 005023 76 WPLSVFLSPDLKPLMG 91 (718)
Q Consensus 76 wP~~vfl~p~g~p~~~ 91 (718)
.|+.+++. +|+.+..
T Consensus 91 ~PT~v~~k-~Gk~v~~ 105 (122)
T TIGR01295 91 TPTFVHIT-DGKQVSV 105 (122)
T ss_pred CCEEEEEe-CCeEEEE
Confidence 99999776 8888853
No 57
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=97.54 E-value=0.02 Score=61.52 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=102.0
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcc
Q 005023 413 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLD 492 (718)
Q Consensus 413 ilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~ 492 (718)
+++.+-| ++.+|...++.+++ +.+.+.+.++++++.+......++..+...........++..
T Consensus 97 ~~~G~aG-~~~~ll~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~H 159 (343)
T cd04434 97 LLSGLAG-LLLALLLLYKTFGE----------------EIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAH 159 (343)
T ss_pred eeechHH-HHHHHHHHHHhcCC----------------cCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhh
Confidence 3444444 45666677777765 678999999999998876543332211111111223347888
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHH
Q 005023 493 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 572 (718)
Q Consensus 493 DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL 572 (718)
..+=.+.+++.+++.+.++.+.+.++.+.......+ +..++.+....... .......--.|.+=.+..++++
T Consensus 160 G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~wChG~~Gi~~~l~~~ 231 (343)
T cd04434 160 GLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQ-DDSGGFWWPSRSNG-------GNRFLVAWCHGAPGILLALLLA 231 (343)
T ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc-CCCCCCCCCCCCCC-------CccccceecCCChhHHHHHHHH
Confidence 888899999999999988888888888877666555 44444343211110 1111223344556677788899
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 005023 573 ASIVAGSKSDYYRQNAEHSLAVFETRLK 600 (718)
Q Consensus 573 ~~lt~~~~~~~y~e~a~~~l~~~~~~i~ 600 (718)
+.++++ +.+.+.+++++........
T Consensus 232 ~~~~~~---~~~~~~~~~~~~~~~~~~~ 256 (343)
T cd04434 232 YKALGD---DKYDEAAEKALELAWKRGL 256 (343)
T ss_pred HHHcCc---HHHHHHHHHHHHHHHHhhh
Confidence 999885 6788888888776655443
No 58
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.53 E-value=0.00016 Score=61.65 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=43.2
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
|..+||++|+.|.. . =.++++..+..+-.++||.++.|++.+. +|..|.|+.++ +|+..
T Consensus 6 f~~~~C~~C~~~~~-~--l~~l~~~~~~~~~~~~vd~~~~~~~~~~--------~~v~~vPt~~~---~g~~~ 64 (82)
T TIGR00411 6 FTSPTCPYCPAAKR-V--VEEVAKEMGDAVEVEYINVMENPQKAME--------YGIMAVPAIVI---NGDVE 64 (82)
T ss_pred EECCCCcchHHHHH-H--HHHHHHHhcCceEEEEEeCccCHHHHHH--------cCCccCCEEEE---CCEEE
Confidence 45699999999985 2 2334555666677789999988876543 67889999887 77743
No 59
>PRK09381 trxA thioredoxin; Provisional
Probab=97.48 E-value=0.00033 Score=63.33 Aligned_cols=69 Identities=14% Similarity=0.269 Sum_probs=52.9
Q ss_pred hhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCC
Q 005023 10 TKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 86 (718)
Q Consensus 10 k~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g 86 (718)
.+.++++++ .+||+.|+.|.. .|+ ++++.++..+.-++||.+..+.+.+. ++..++|+++|+ ++|
T Consensus 18 ~~~~~~vvv~f~~~~C~~C~~~~p-~~~--~l~~~~~~~~~~~~vd~~~~~~~~~~--------~~v~~~Pt~~~~-~~G 85 (109)
T PRK09381 18 LKADGAILVDFWAEWCGPCKMIAP-ILD--EIADEYQGKLTVAKLNIDQNPGTAPK--------YGIRGIPTLLLF-KNG 85 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHhCCCcEEEEEECCCChhHHHh--------CCCCcCCEEEEE-eCC
Confidence 455788866 389999999884 343 56667777777889999988876543 578899999999 699
Q ss_pred ceee
Q 005023 87 KPLM 90 (718)
Q Consensus 87 ~p~~ 90 (718)
++..
T Consensus 86 ~~~~ 89 (109)
T PRK09381 86 EVAA 89 (109)
T ss_pred eEEE
Confidence 9874
No 60
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.47 E-value=0.00044 Score=68.28 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=52.3
Q ss_pred hcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHH---------------HHHHhcC
Q 005023 11 KTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT---------------YVQALYG 72 (718)
Q Consensus 11 ~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~---------------~~q~~~g 72 (718)
..+|+++.+ +||+.|+.|. |.+.++.++++..|.|+.++.++-...|.+ .....+|
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG 134 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence 457888763 8999999875 556666677788888886443221111111 1122357
Q ss_pred CCCCCcEEEeCCCCceeecc-cccC
Q 005023 73 GGGWPLSVFLSPDLKPLMGG-TYFP 96 (718)
Q Consensus 73 ~~GwP~~vfl~p~g~p~~~~-~y~p 96 (718)
..|+|+++|++++|+..+.. +.++
T Consensus 135 v~~~P~~~~id~~G~i~~~~~G~~~ 159 (173)
T TIGR00385 135 VYGAPETFLVDGNGVILYRHAGPLN 159 (173)
T ss_pred CeeCCeEEEEcCCceEEEEEeccCC
Confidence 78999999999999998743 3444
No 61
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.40 E-value=0.0021 Score=74.54 Aligned_cols=134 Identities=19% Similarity=0.095 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC----CCCCCC----
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP----SKAPGF---- 490 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~----~~~~~~---- 490 (718)
|-.++|++.++..++| +++.+.+.+..+.|.+.... +| ++..+.... .....-
T Consensus 63 g~wl~a~a~~~~~~~D----------------~~l~~~~d~~V~~l~~~Q~~--dG-Yl~~~~~~~~~~~~~~w~~~~he 123 (520)
T PF07944_consen 63 GKWLEAAAYAYAYTGD----------------PELKAKADEIVDELAAAQQP--DG-YLGTYPEERNFNPDDRWAPDMHE 123 (520)
T ss_pred HHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHhccC--Cc-eecccccccccccccCCCCCccc
Confidence 6789999999999998 78999999999999887653 45 444443322 122232
Q ss_pred cccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---hcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHH
Q 005023 491 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE---LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI 567 (718)
Q Consensus 491 l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~---~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~ 567 (718)
++....++.||++.|++||+++.|+.|.++++.+.+ .|-+ +.+ ...-.|.+ .-+..
T Consensus 124 ~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~-~~~-------------------~~~~~~~~-~~i~~ 182 (520)
T PF07944_consen 124 LYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGP-EPG-------------------QKMGYPEH-GGINE 182 (520)
T ss_pred eehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCH-HHh-------------------hccccccc-chHHH
Confidence 555678999999999999999999999999999833 3311 110 00111222 34558
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 005023 568 NLVRLASIVAGSKSDYYRQNAEHSLAVF 595 (718)
Q Consensus 568 ~LlrL~~lt~~~~~~~y~e~a~~~l~~~ 595 (718)
.|.+|+++||+ ++|++.|+..+...
T Consensus 183 ~l~~LY~~Tgd---~~yL~lA~~f~~~~ 207 (520)
T PF07944_consen 183 ALVRLYEITGD---ERYLDLAEYFVDQR 207 (520)
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHHHh
Confidence 99999999996 89999998887754
No 62
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.39 E-value=0.00037 Score=67.70 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=56.6
Q ss_pred hHHhhhhhc--CCcEEE---EcCCchhhhhhccccCcHHHHHHhh-cccEEEEecCCCCcchHHHHHHHHHHhcCCCCCC
Q 005023 4 RSFCGGTKT--RRTHFL---INTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 77 (718)
Q Consensus 4 ~a~~~Ak~e--~K~ii~---y~~C~wChvM~~esf~d~~va~~ln-~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP 77 (718)
+.+++..++ ++++++ .+||..|+.|.. +|+ ++++.++ .++..++||.++.|++.+.|. ++.-+++.|+|
T Consensus 36 ~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p-~l~--~la~~~~~~~v~f~~VDvd~~~~la~~~~--V~~~~~v~~~P 110 (152)
T cd02962 36 KTLEEELERDKRVTWLVEFFTTWSPECVNFAP-VFA--ELSLKYNNNNLKFGKIDIGRFPNVAEKFR--VSTSPLSKQLP 110 (152)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHcccCCeEEEEEECCCCHHHHHHcC--ceecCCcCCCC
Confidence 345555433 456655 389999999985 444 4566665 358889999999998876642 11122345699
Q ss_pred cEEEeCCCCceeecc
Q 005023 78 LSVFLSPDLKPLMGG 92 (718)
Q Consensus 78 ~~vfl~p~g~p~~~~ 92 (718)
|.+|+. +|+++...
T Consensus 111 T~ilf~-~Gk~v~r~ 124 (152)
T cd02962 111 TIILFQ-GGKEVARR 124 (152)
T ss_pred EEEEEE-CCEEEEEE
Confidence 988885 99999644
No 63
>PTZ00051 thioredoxin; Provisional
Probab=97.39 E-value=0.00037 Score=61.47 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=53.8
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
++.+.+..+++++++. .+||..|+.|.. .|+ .+++... ++.-++||.++.+++.+. ++..|+|+.
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~-~l~--~l~~~~~-~~~~~~vd~~~~~~~~~~--------~~v~~~Pt~ 75 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAP-FYE--ECSKEYT-KMVFVKVDVDELSEVAEK--------ENITSMPTF 75 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHcC-CcEEEEEECcchHHHHHH--------CCCceeeEE
Confidence 4667788888898865 499999999974 443 3444333 467778888876554333 678899997
Q ss_pred EEeCCCCceee
Q 005023 80 VFLSPDLKPLM 90 (718)
Q Consensus 80 vfl~p~g~p~~ 90 (718)
+++ .+|+++.
T Consensus 76 ~~~-~~g~~~~ 85 (98)
T PTZ00051 76 KVF-KNGSVVD 85 (98)
T ss_pred EEE-eCCeEEE
Confidence 766 7999884
No 64
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.33 E-value=0.00057 Score=61.13 Aligned_cols=73 Identities=11% Similarity=0.101 Sum_probs=52.0
Q ss_pred Hhhh-hhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEE
Q 005023 6 FCGG-TKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 81 (718)
Q Consensus 6 ~~~A-k~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vf 81 (718)
++.. +..++++++ .+||..|+.|.. .| .++++.+.....-++||.++.+++.+. .|+.++|+.+|
T Consensus 11 f~~~i~~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~~~~~~~~--------~~i~~~Pt~~~ 79 (104)
T cd03004 11 FPELVLNRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQKYESLCQQ--------ANIRAYPTIRL 79 (104)
T ss_pred HHHHHhcCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCchHHHHHH--------cCCCcccEEEE
Confidence 4443 345677765 389999999974 34 345666665666779999998766543 58899999999
Q ss_pred eCCCCcee
Q 005023 82 LSPDLKPL 89 (718)
Q Consensus 82 l~p~g~p~ 89 (718)
+.+.|++.
T Consensus 80 ~~~g~~~~ 87 (104)
T cd03004 80 YPGNASKY 87 (104)
T ss_pred EcCCCCCc
Confidence 98764654
No 65
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.33 E-value=0.00071 Score=67.66 Aligned_cols=75 Identities=9% Similarity=0.074 Sum_probs=48.6
Q ss_pred hcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHH---------------HHHhcC
Q 005023 11 KTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALYG 72 (718)
Q Consensus 11 ~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~---------------~q~~~g 72 (718)
..+|+++.+ +||+.|+.+.. .+.++-++++..|-|+.++.++-...|++- ....+|
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p------~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQ------YLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 358888663 89999998753 444444456666667655443322112211 122468
Q ss_pred CCCCCcEEEeCCCCceeec
Q 005023 73 GGGWPLSVFLSPDLKPLMG 91 (718)
Q Consensus 73 ~~GwP~~vfl~p~g~p~~~ 91 (718)
..|.|+++|++++|++.+.
T Consensus 140 v~~~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYR 158 (185)
T ss_pred CCcCCeEEEECCCceEEEE
Confidence 8999999999999998864
No 66
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.31 E-value=0.0005 Score=61.16 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=50.0
Q ss_pred hHHhhhhhcCCcEEE--EcCCchhhhhhccccCcHHHHHHhh-cccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEE
Q 005023 4 RSFCGGTKTRRTHFL--INTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 80 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~--y~~C~wChvM~~esf~d~~va~~ln-~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~v 80 (718)
+.+++..+ ++.++- .+||+.|+.|... |+ ++++.++ ..+...+||.++.|++.+. +++.+.|+++
T Consensus 9 ~~f~~~~~-~~~lv~f~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~~~~~~~~~~--------~~i~~~Pt~~ 76 (101)
T cd02994 9 SNWTLVLE-GEWMIEFYAPWCPACQQLQPE-WE--EFADWSDDLGINVAKVDVTQEPGLSGR--------FFVTALPTIY 76 (101)
T ss_pred hhHHHHhC-CCEEEEEECCCCHHHHHHhHH-HH--HHHHhhccCCeEEEEEEccCCHhHHHH--------cCCcccCEEE
Confidence 34555544 344432 4899999999864 65 4455454 3577789999988876544 5788999998
Q ss_pred EeCCCCce
Q 005023 81 FLSPDLKP 88 (718)
Q Consensus 81 fl~p~g~p 88 (718)
|+ ++|++
T Consensus 77 ~~-~~g~~ 83 (101)
T cd02994 77 HA-KDGVF 83 (101)
T ss_pred Ee-CCCCE
Confidence 87 78885
No 67
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.30 E-value=0.00081 Score=61.82 Aligned_cols=91 Identities=20% Similarity=0.320 Sum_probs=58.2
Q ss_pred HhhhhhcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEe
Q 005023 6 FCGGTKTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 82 (718)
Q Consensus 6 ~~~Ak~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl 82 (718)
+.++.+.++.++.+ +||.+|+.|.. .++ ++++.. +..-.++||.++.|++... +|+.+.|+.+|+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~-~l~--~la~~~-~~i~~~~vd~d~~~~l~~~--------~~v~~vPt~~i~ 82 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQ-LLE--ELSELS-DKLKLEIYDFDEDKEKAEK--------YGVERVPTTIFL 82 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHH-HHH--HHHHhc-CceEEEEEeCCcCHHHHHH--------cCCCcCCEEEEE
Confidence 44555566666543 79999999985 333 244432 4455678999988766554 678899999999
Q ss_pred CCC---CceeecccccCCCCCCCcccHHHHHHHHHH
Q 005023 83 SPD---LKPLMGGTYFPPEDKYGRPGFKTILRKVKD 115 (718)
Q Consensus 83 ~p~---g~p~~~~~y~p~~~~~~~~~f~~~L~~i~~ 115 (718)
... |+..+.| .|+. ..|.++|+.|-+
T Consensus 83 ~~g~~~~~~~~~G--~~~~-----~el~~~i~~i~~ 111 (113)
T cd02975 83 QDGGKDGGIRYYG--LPAG-----YEFASLIEDIVR 111 (113)
T ss_pred eCCeecceEEEEe--cCch-----HHHHHHHHHHHh
Confidence 753 3332322 3433 368888877643
No 68
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.30 E-value=0.00067 Score=60.11 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=47.8
Q ss_pred hhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc--ccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCC
Q 005023 10 TKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 84 (718)
Q Consensus 10 k~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~--~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p 84 (718)
++++|++++ .+||.+|+.|..+. .++++.++. +|...+||.++. ++... .+..++|+.+++.+
T Consensus 15 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~-~~~~~--------~~~~~~Pt~~~~~~ 82 (104)
T cd02995 15 LDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN-DVPSE--------FVVDGFPTILFFPA 82 (104)
T ss_pred hCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch-hhhhh--------ccCCCCCEEEEEcC
Confidence 455688765 38999999998644 667777765 689999999875 33322 35589999999976
Q ss_pred CC
Q 005023 85 DL 86 (718)
Q Consensus 85 ~g 86 (718)
.+
T Consensus 83 ~~ 84 (104)
T cd02995 83 GD 84 (104)
T ss_pred CC
Confidence 55
No 69
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.27 E-value=0.00065 Score=63.36 Aligned_cols=90 Identities=16% Similarity=0.024 Sum_probs=58.9
Q ss_pred HhhhhhcCC-cEEEE---cCCch--hh--hhhccccCcHHHHH-Hh-hcccEEEEecCCCCcchHHHHHHHHHHhcCCCC
Q 005023 6 FCGGTKTRR-THFLI---NTCHW--CH--VMEVESFEDEGVAK-LL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 75 (718)
Q Consensus 6 ~~~Ak~e~K-~ii~y---~~C~w--Ch--vM~~esf~d~~va~-~l-n~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~G 75 (718)
+++..++++ +++.. .||+. |+ .|+. ++. ++|+ +| ......+|||.++.|++.+. +|+.|
T Consensus 19 F~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p-~~~--~~aa~~l~~~~v~~~kVD~d~~~~La~~--------~~I~~ 87 (120)
T cd03065 19 YKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEE-LVL--ELAAQVLEDKGIGFGLVDSKKDAKVAKK--------LGLDE 87 (120)
T ss_pred HHHHHHhCCceEEEEECCCcCChhhChhhcchh-hHH--HHHHHHhhcCCCEEEEEeCCCCHHHHHH--------cCCcc
Confidence 444455554 55542 68877 99 5552 222 3333 43 45688999999999999887 68899
Q ss_pred CCcEEEeCCCCceeecccccCCCCCCCcccHHHHHHHH
Q 005023 76 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 113 (718)
Q Consensus 76 wP~~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i 113 (718)
.||.+++. +|+++.-.+..+++ .+.+.|+++
T Consensus 88 iPTl~lfk-~G~~v~~~G~~~~~------~l~~~l~~~ 118 (120)
T cd03065 88 EDSIYVFK-DDEVIEYDGEFAAD------TLVEFLLDL 118 (120)
T ss_pred ccEEEEEE-CCEEEEeeCCCCHH------HHHHHHHHH
Confidence 99998886 99987533445543 455555543
No 70
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.27 E-value=0.00057 Score=60.30 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=55.8
Q ss_pred HHhhhhhc-CCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEE
Q 005023 5 SFCGGTKT-RRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 80 (718)
Q Consensus 5 a~~~Ak~e-~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~v 80 (718)
-+++..++ ++++++ .+||+.|+.|.. .| .++++.+......++||.++.+++.+. ++..++|+.+
T Consensus 8 ~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~-~~--~~~~~~~~~~v~~~~vd~~~~~~l~~~--------~~v~~~Pt~~ 76 (103)
T PF00085_consen 8 NFEKFINESDKPVVVYFYAPWCPPCKAFKP-IL--EKLAKEYKDNVKFAKVDCDENKELCKK--------YGVKSVPTII 76 (103)
T ss_dssp THHHHHTTTSSEEEEEEESTTSHHHHHHHH-HH--HHHHHHTTTTSEEEEEETTTSHHHHHH--------TTCSSSSEEE
T ss_pred HHHHHHHccCCCEEEEEeCCCCCccccccc-ee--cccccccccccccchhhhhccchhhhc--------cCCCCCCEEE
Confidence 34555555 888866 389999999984 33 456777777899999999988766655 6789999999
Q ss_pred EeCCCCceee
Q 005023 81 FLSPDLKPLM 90 (718)
Q Consensus 81 fl~p~g~p~~ 90 (718)
|+. +|+...
T Consensus 77 ~~~-~g~~~~ 85 (103)
T PF00085_consen 77 FFK-NGKEVK 85 (103)
T ss_dssp EEE-TTEEEE
T ss_pred EEE-CCcEEE
Confidence 886 666653
No 71
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.25 E-value=0.0083 Score=60.22 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 005023 251 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 298 (718)
Q Consensus 251 LyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa 298 (718)
-..|++.|.++++||++|+|+.|+++|+++++...-. ..+||+-+-
T Consensus 29 amaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~--~~~GG~~~~ 74 (189)
T PF06662_consen 29 AMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVP--VEEGGVLAT 74 (189)
T ss_pred HHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcCh--HhhCCeeEE
Confidence 3479999999999999999999999999999987642 346887553
No 72
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.24 E-value=0.00076 Score=59.80 Aligned_cols=68 Identities=26% Similarity=0.469 Sum_probs=49.8
Q ss_pred hhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhh--cccEEEEecCCC-CcchHHHHHHHHHHhcCCCCCCcEEEeC
Q 005023 10 TKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFLS 83 (718)
Q Consensus 10 k~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln--~~Fv~vkvD~ee-~pd~d~~y~~~~q~~~g~~GwP~~vfl~ 83 (718)
++.+|+++. .+||+.|+.|... | .++++.+. .+++.+++|.++ .+++.+. .+..|+|+++|+.
T Consensus 15 ~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~~~~~~~~--------~~i~~~P~~~~~~ 83 (105)
T cd02998 15 GDDKKDVLVEFYAPWCGHCKNLAPE-Y--EKLAAVFANEDDVVIAKVDADEANKDLAKK--------YGVSGFPTLKFFP 83 (105)
T ss_pred cCCCCcEEEEEECCCCHHHHhhChH-H--HHHHHHhCCCCCEEEEEEECCCcchhhHHh--------CCCCCcCEEEEEe
Confidence 345667654 4899999999752 2 34555554 569999999988 7766554 4678999999998
Q ss_pred CCCce
Q 005023 84 PDLKP 88 (718)
Q Consensus 84 p~g~p 88 (718)
+.|+.
T Consensus 84 ~~~~~ 88 (105)
T cd02998 84 KGSTE 88 (105)
T ss_pred CCCCC
Confidence 87644
No 73
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.23 E-value=0.00079 Score=60.55 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=48.2
Q ss_pred hhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCC--CcchHHHHHHHHHHhcCCCCCCcEEEeCC
Q 005023 10 TKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSP 84 (718)
Q Consensus 10 k~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee--~pd~d~~y~~~~q~~~g~~GwP~~vfl~p 84 (718)
++.++++++ .+||..|+.|.. .|+ ++++.++..+..++||.++ .+++.+. ++..|+|+.+|+.+
T Consensus 15 ~~~~~~~lv~f~a~wC~~C~~~~~-~~~--~~a~~~~~~~~~~~v~~~~~~~~~~~~~--------~~i~~~Pt~~~~~~ 83 (109)
T cd03002 15 HNTNYTTLVEFYAPWCGHCKNLKP-EYA--KAAKELDGLVQVAAVDCDEDKNKPLCGK--------YGVQGFPTLKVFRP 83 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHhhCh-HHH--HHHHHhcCCceEEEEecCccccHHHHHH--------cCCCcCCEEEEEeC
Confidence 345776755 389999999986 344 5777887666666777776 5554433 57899999999988
Q ss_pred CC
Q 005023 85 DL 86 (718)
Q Consensus 85 ~g 86 (718)
.+
T Consensus 84 ~~ 85 (109)
T cd03002 84 PK 85 (109)
T ss_pred CC
Confidence 76
No 74
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.21 E-value=0.00091 Score=59.22 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=53.4
Q ss_pred hHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc---ccEEEEecCCCCcchHHHHHHHHHHhcCCCCCC
Q 005023 4 RSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 77 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~---~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP 77 (718)
+.++.+..+++ +++ .+||..|+.|.. .|+ ++++.+.. .+..++||.++.+++.+. +++.++|
T Consensus 8 ~~f~~~~~~~~-~lv~f~a~wC~~C~~~~p-~~~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~--------~~v~~~P 75 (102)
T cd03005 8 DNFDHHIAEGN-HFVKFFAPWCGHCKRLAP-TWE--QLAKKFNNENPSVKIAKVDCTQHRELCSE--------FQVRGYP 75 (102)
T ss_pred HHHHHHhhcCC-EEEEEECCCCHHHHHhCH-HHH--HHHHHHhccCCcEEEEEEECCCChhhHhh--------cCCCcCC
Confidence 45666666664 544 389999999975 455 35566654 688899999988766544 5778999
Q ss_pred cEEEeCCCCcee
Q 005023 78 LSVFLSPDLKPL 89 (718)
Q Consensus 78 ~~vfl~p~g~p~ 89 (718)
+.+|+ ++|++.
T Consensus 76 t~~~~-~~g~~~ 86 (102)
T cd03005 76 TLLLF-KDGEKV 86 (102)
T ss_pred EEEEE-eCCCee
Confidence 99999 688765
No 75
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=97.18 E-value=0.087 Score=58.54 Aligned_cols=143 Identities=8% Similarity=-0.068 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHh-hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-----------cCCCCCCC
Q 005023 421 VISSFARASKIL-KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-----------RNGPSKAP 488 (718)
Q Consensus 421 ~I~ALa~A~~~~-~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~-----------~~g~~~~~ 488 (718)
.+++|+.+++.. ++ +.+++.++++.+|+.+++.+...+..+... ..+.....
T Consensus 177 i~~~L~~~~~~~~~~----------------~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 240 (382)
T cd04793 177 PLALLALAKERGIRV----------------DGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRD 240 (382)
T ss_pred HHHHHHHHHHcCCCc----------------CChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCC
Confidence 368888888876 44 679999999999998877553322111110 00111234
Q ss_pred CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHH
Q 005023 489 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVIN 568 (718)
Q Consensus 489 ~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~ 568 (718)
++...-+=.+.+++.++++++|+.+.+.|.++.+.+...... .+ ...+...=.|.+=.+..
T Consensus 241 ~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~-----------------~~~~~~lChG~~G~~~~ 301 (382)
T cd04793 241 AWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQ--LS-----------------KLISPTLCHGLAGLLFI 301 (382)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhh--hc-----------------cCCCCCcCccHHHHHHH
Confidence 556666778899999999999999999999998776543210 00 00111233455666788
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 005023 569 LVRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 601 (718)
Q Consensus 569 LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~~ 601 (718)
|++++..|++ +++.+.|+.++........+
T Consensus 302 l~~~~~~~~~---~~~~~~a~~~~~~~l~~~~~ 331 (382)
T cd04793 302 FYLLYKDTNT---NEFKSALEYLLNQIISSYSE 331 (382)
T ss_pred HHHHHHHhCC---cHHHHHHHHHHHHHHHHhcc
Confidence 9999999986 78999999888877666543
No 76
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.16 E-value=0.00074 Score=62.28 Aligned_cols=73 Identities=11% Similarity=-0.050 Sum_probs=54.4
Q ss_pred hHHhhh---hhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchH-HHHHHHHHHhcCCCCC
Q 005023 4 RSFCGG---TKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD-KVYMTYVQALYGGGGW 76 (718)
Q Consensus 4 ~a~~~A---k~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d-~~y~~~~q~~~g~~Gw 76 (718)
+-+..+ .++++++++ .+||..|+.|.. .| +++|+.++....-++||.++.+++. +. +++.|+
T Consensus 17 ~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p-~~--~~la~~~~~~v~~~~Vd~d~~~~l~~~~--------~~I~~~ 85 (113)
T cd03006 17 GQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQ-EF--EQVAQKLSDQVLFVAINCWWPQGKCRKQ--------KHFFYF 85 (113)
T ss_pred hhhHHHHhcccCCCEEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCeEEEEEECCCChHHHHHh--------cCCccc
Confidence 344554 578888866 389999999985 44 4688888777667999999888764 23 567899
Q ss_pred CcEEEeCCCCce
Q 005023 77 PLSVFLSPDLKP 88 (718)
Q Consensus 77 P~~vfl~p~g~p 88 (718)
|+.+++ .+|+.
T Consensus 86 PTl~lf-~~g~~ 96 (113)
T cd03006 86 PVIHLY-YRSRG 96 (113)
T ss_pred CEEEEE-ECCcc
Confidence 999888 57763
No 77
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.11 E-value=0.0044 Score=64.05 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=51.3
Q ss_pred CCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 13 RRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 13 ~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
++++++ .+||+.|+.|..+ | .++++.+...+...+||.++.+++.+. +++.|+|+.+|+. +|+++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~~~~~l~~~--------~~I~~~PTl~~f~-~G~~v 119 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDATRALNLAKR--------FAIKGYPTLLLFD-KGKMY 119 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCcccHHHHHH--------cCCCcCCEEEEEE-CCEEE
Confidence 567765 3899999999975 4 567888877666778999998766554 5789999999998 78876
No 78
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.10 E-value=0.0011 Score=60.92 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=55.8
Q ss_pred hHHhhhhhcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEE
Q 005023 4 RSFCGGTKTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 80 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~v 80 (718)
+.+.++.+++++++.+ +||..|+.|.. .+ +++++-.. +...++||.++.|++.+. +++.++|+.+
T Consensus 13 ~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p-~l--~~la~~~~-~i~f~~Vd~~~~~~l~~~--------~~v~~vPt~l 80 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYHPEFFRCKIMDK-HL--EILAKKHL-ETKFIKVNAEKAPFLVEK--------LNIKVLPTVI 80 (113)
T ss_pred HHHHHHHhCCCcEEEEEECCCCccHHHHHH-HH--HHHHHHcC-CCEEEEEEcccCHHHHHH--------CCCccCCEEE
Confidence 5677788888888763 89999999984 22 23343332 367789999999887765 6788999998
Q ss_pred EeCCCCceee
Q 005023 81 FLSPDLKPLM 90 (718)
Q Consensus 81 fl~p~g~p~~ 90 (718)
|+. +|+.+.
T Consensus 81 ~fk-~G~~v~ 89 (113)
T cd02989 81 LFK-NGKTVD 89 (113)
T ss_pred EEE-CCEEEE
Confidence 887 888874
No 79
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.09 E-value=0.0019 Score=60.36 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=47.2
Q ss_pred hhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc---c--cEEEEecCCCCcchHHHH---------------
Q 005023 7 CGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND---W--FVSIKVDREERPDVDKVY--------------- 63 (718)
Q Consensus 7 ~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~---~--Fv~vkvD~ee~pd~d~~y--------------- 63 (718)
..+.-.+|++++ .+||+.|+.+... +. ++.+.+.+ + +|.|.+|.++. +..+.+
T Consensus 12 ~l~~~~gk~vll~Fwa~wC~~C~~~~p~-l~--~~~~~~~~~~~~~~vv~is~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T cd03009 12 PVSSLEGKTVGLYFSASWCPPCRAFTPK-LV--EFYEKLKESGKNFEIVFISWDRDEE-SFNDYFSKMPWLAVPFSDRER 87 (131)
T ss_pred cHHHhCCcEEEEEEECCCChHHHHHhHH-HH--HHHHHHHhcCCCEEEEEEECCCCHH-HHHHHHHcCCeeEcccCCHHH
Confidence 344456888876 3899999987542 11 12222222 2 55666665531 211111
Q ss_pred HHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 64 MTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 64 ~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
...+...+|..|.|++++++++|+.+.
T Consensus 88 ~~~~~~~~~v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 88 RSRLNRTFKIEGIPTLIILDADGEVVT 114 (131)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEc
Confidence 012222478899999999999999885
No 80
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.001 Score=63.81 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=59.1
Q ss_pred hhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc---ccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEE
Q 005023 7 CGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 80 (718)
Q Consensus 7 ~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~---~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~v 80 (718)
++=++..+|||+ ..||..|+.|.. .+.++.++ .|-..|||.||.|++... +++...|+++
T Consensus 55 ~~Vi~S~~PVlVdF~A~WCgPCk~l~P------~l~~~~~~~~g~~k~~kvdtD~~~ela~~--------Y~I~avPtvl 120 (150)
T KOG0910|consen 55 DKVINSDVPVLVDFHAEWCGPCKMLGP------ILEELVSEYAGKFKLYKVDTDEHPELAED--------YEISAVPTVL 120 (150)
T ss_pred HHHHccCCCEEEEEecCcCccHhHhhH------HHHHHHHhhcCeEEEEEEccccccchHhh--------cceeeeeEEE
Confidence 344577889876 589999999974 44444433 488999999999999887 5778899998
Q ss_pred EeCCCCceee-cccccCCC
Q 005023 81 FLSPDLKPLM-GGTYFPPE 98 (718)
Q Consensus 81 fl~p~g~p~~-~~~y~p~~ 98 (718)
++. +|+..- ..|+.|++
T Consensus 121 vfk-nGe~~d~~vG~~~~~ 138 (150)
T KOG0910|consen 121 VFK-NGEKVDRFVGAVPKE 138 (150)
T ss_pred EEE-CCEEeeeecccCCHH
Confidence 887 888873 45777764
No 81
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.055 Score=60.79 Aligned_cols=175 Identities=20% Similarity=0.213 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHHHhCCCcccCC--CcEEE-EecCCCCC---CCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHH
Q 005023 205 EASEGQKMVLFTLQCMAKGGIHDHVG--GGFHR-YSVDERWH---VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICR 278 (718)
Q Consensus 205 ~~~~~~~~~~~TL~~m~~gGi~D~v~--GGF~R-YsvD~~W~---vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~ 278 (718)
+++...+-+..+.+.++. +-|..| ||+++ =.-..+|. .-|| ||--.-|+.....+||+||....++++.
T Consensus 83 ~dp~Lekr~D~vi~~~a~--~QdedGYl~~~~q~~~pe~Rw~nlr~~He---lY~aghLieg~va~~qaTGkr~lldV~~ 157 (589)
T COG3533 83 GDPELEKRIDEVVEELAR--AQDEDGYLGGWFQADFPEERWGNLRPNHE---LYCAGHLIEGGVAAHQATGKRRLLDVVC 157 (589)
T ss_pred CCHHHHHHHHHHHHHHHH--hhccCCcccceeeccCchhhhhccccchH---HHHhHHHHhhhhHHHHhhCcchHHHHHH
Confidence 467888888888888888 777654 46654 12245664 3444 9999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCC
Q 005023 279 DILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHN 358 (718)
Q Consensus 279 ~~~~~l~~~m~~p~Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~ 358 (718)
+-.+|+.+-+ .|+- | . ..|.+
T Consensus 158 rlADhi~tvf-gp~~------~-----------q-------------------------------~~g~~---------- 178 (589)
T COG3533 158 RLADHIATVF-GPEE------D-----------Q-------------------------------VPGYC---------- 178 (589)
T ss_pred HHHHhhhhhc-Cccc------c-----------c-------------------------------ccccc----------
Confidence 9999988744 1110 0 0 01111
Q ss_pred ccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhh
Q 005023 359 EFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAES 438 (718)
Q Consensus 359 ~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~ 438 (718)
..+-+-.||++.|+++|+
T Consensus 179 ----------------------------------------------------------gH~eielAl~~Ly~~Tg~---- 196 (589)
T COG3533 179 ----------------------------------------------------------GHPEIELALAELYRLTGD---- 196 (589)
T ss_pred ----------------------------------------------------------CCCchhHHHHHHHHHhcC----
Confidence 112344588999999998
Q ss_pred hcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHH
Q 005023 439 AMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAI 518 (718)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~ 518 (718)
++||+.|+...+ ....+| + -.+|.-...++.--..+++.|+.+||+.+||+.+...+.
T Consensus 197 ------------~rYL~LA~~Fi~---~rg~~P-----~--~~rg~e~~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~ 254 (589)
T COG3533 197 ------------QRYLDLARRFIH---QRGVEP-----L--AQRGDELEGGHAVRQIYLYIGAADLAEETGDDSLRQAAE 254 (589)
T ss_pred ------------hHHHHHHHHHHH---HhccCh-----h--hcCchhhhhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHH
Confidence 899999987553 333333 1 111211224556667899999999999999999999999
Q ss_pred HHHHHHHHh
Q 005023 519 ELQNTQDEL 527 (718)
Q Consensus 519 ~L~~~~~~~ 527 (718)
.|++.+.++
T Consensus 255 ~lW~~~t~k 263 (589)
T COG3533 255 FLWQNVTTR 263 (589)
T ss_pred HHHHHhhhh
Confidence 999887654
No 82
>PLN02266 endoglucanase
Probab=97.06 E-value=0.021 Score=65.60 Aligned_cols=182 Identities=18% Similarity=0.162 Sum_probs=107.4
Q ss_pred cCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHhccCCCCceeeec-cCCcc
Q 005023 228 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL--TKDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DADSA 304 (718)
Q Consensus 228 ~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~--t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~-DADs~ 304 (718)
.+-||+| |..=.+-.---|-|.-.+|.+.|.+--.. .+-|.+++.++=.+||+++ |+.++|+||.-. |.+.+
T Consensus 89 DlsGGwy----DAGD~~Kf~~p~a~s~t~L~w~~~ef~~~~~~~~pd~Ldelkw~~D~llk-~~~~~~~vy~qVg~~~~D 163 (510)
T PLN02266 89 DLVGGYY----DAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKSELQNAKDAIRWATDYLLK-ATAHPDTIYVQVGDANKD 163 (510)
T ss_pred cCCCcce----eCCCCceecchHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHH-hccCCCeEEEEeCCCCCC
Confidence 4667887 33333333334677777888887764322 3458889999999999998 777788888743 22110
Q ss_pred cccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHH
Q 005023 305 ETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLE 384 (718)
Q Consensus 305 ~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~ 384 (718)
...|..-|... ..+.+..+
T Consensus 164 ------------h~~W~~Pe~~~---------------------------------~~R~~y~i---------------- 182 (510)
T PLN02266 164 ------------HACWERPEDMD---------------------------------TPRSVFKV---------------- 182 (510)
T ss_pred ------------cccCCChhhcC---------------------------------CCCeeEEe----------------
Confidence 01243221100 00111100
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHH
Q 005023 385 KYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFI 464 (718)
Q Consensus 385 ~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l 464 (718)
....|.. +.-+-+++|||.|++++++- ...| ..++|+.|+++++|.
T Consensus 183 ------------------~~~~pgs------d~a~e~AAALAaas~vfk~~--D~~y--------A~~~L~~Ak~ly~fa 228 (510)
T PLN02266 183 ------------------DKNTPGS------DVAAETAAALAAASLVFRKS--DPTY--------SKLLVRRAIRVFQFA 228 (510)
T ss_pred ------------------CCCCCch------HHHHHHHHHHHHHHHHhccC--CHHH--------HHHHHHHHHHHHHHH
Confidence 0112332 23477899999999999861 0111 146899999999998
Q ss_pred HHhccccCCCeEEEeecCCC-----CC---CCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005023 465 RRHLYDEQTHRLQHSFRNGP-----SK---APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 521 (718)
Q Consensus 465 ~~~~~d~~~g~l~~~~~~g~-----~~---~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~ 521 (718)
.++= |.+ .++. +. ..++.| .+++|.++||.+|||+.|++.+....
T Consensus 229 ~~~~-----g~y----~~~~~~~~~~~y~s~s~~~D---El~WAAawLy~ATGd~~Yl~~~~~~~ 281 (510)
T PLN02266 229 DKYR-----GAY----SNGLKPDVCPFYCSYSGYQD---ELLWGAAWLHKATKNPTYLNYIQVNG 281 (510)
T ss_pred HhCC-----CCc----cCCCCcccCCCcccCCcchH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8642 111 1110 00 112333 45778899999999999999887654
No 83
>PHA02125 thioredoxin-like protein
Probab=97.06 E-value=0.0013 Score=55.77 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=39.1
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
|..+||++|+.|... |+ ++ .|..++||.++.+++.+. +++.++|+.+ +|+.+.
T Consensus 5 f~a~wC~~Ck~~~~~-l~--~~------~~~~~~vd~~~~~~l~~~--------~~v~~~PT~~----~g~~~~ 57 (75)
T PHA02125 5 FGAEWCANCKMVKPM-LA--NV------EYTYVDVDTDEGVELTAK--------HHIRSLPTLV----NTSTLD 57 (75)
T ss_pred EECCCCHhHHHHHHH-HH--HH------hheEEeeeCCCCHHHHHH--------cCCceeCeEE----CCEEEE
Confidence 445999999999864 32 12 267789999998877655 6788999976 677664
No 84
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.05 E-value=0.0011 Score=76.25 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=47.1
Q ss_pred hcCCcEEE---EcCCchhhhhhccccCcHHHHHHhh-c--ccEEEEecC---CCCc-chHHHH--------------HHH
Q 005023 11 KTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLN-D--WFVSIKVDR---EERP-DVDKVY--------------MTY 66 (718)
Q Consensus 11 ~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln-~--~Fv~vkvD~---ee~p-d~d~~y--------------~~~ 66 (718)
+++|++++ .+||++|+.|..+.- ++++..+ + .||.|.+|. ++.+ ++.+.+ ...
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~---eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~ 130 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETE---KWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT 130 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHH---HHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH
Confidence 37888877 499999999763221 2333232 2 244444421 1110 011100 001
Q ss_pred HHHhcCCCCCCcEEEeCCCCceeec-ccccCC
Q 005023 67 VQALYGGGGWPLSVFLSPDLKPLMG-GTYFPP 97 (718)
Q Consensus 67 ~q~~~g~~GwP~~vfl~p~g~p~~~-~~y~p~ 97 (718)
+...+|+.|+|+++|++++|+++.. .++.+.
T Consensus 131 lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~ 162 (521)
T PRK14018 131 LAQSLNISVYPSWAIIGKDGDVQRIVKGSISE 162 (521)
T ss_pred HHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCH
Confidence 2224688999999999999999864 356654
No 85
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.04 E-value=0.00092 Score=60.04 Aligned_cols=64 Identities=11% Similarity=0.306 Sum_probs=47.8
Q ss_pred hhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCC-CCcchHHHHHHHHHHhcCCCCCCcEEEeCCC
Q 005023 10 TKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 85 (718)
Q Consensus 10 k~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~e-e~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~ 85 (718)
+..+|++++ .+||..|+.|.. .|+ ++++.+. .+..++||.+ +.|++.+. +++.|+||++|+...
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p-~l~--~la~~~~-~~~~~~vd~~~~~~~l~~~--------~~V~~~PT~~lf~~g 82 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRP-HFN--ALSSMFP-QIRHLAIEESSIKPSLLSR--------YGVVGFPTILLFNST 82 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhH-HHH--HHHHHhc-cCceEEEECCCCCHHHHHh--------cCCeecCEEEEEcCC
Confidence 456888876 389999999985 443 4666665 4777889988 77766554 678899999999754
No 86
>PLN02340 endoglucanase
Probab=97.04 E-value=0.016 Score=68.02 Aligned_cols=187 Identities=19% Similarity=0.215 Sum_probs=111.8
Q ss_pred cCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH---HHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeec-cCC
Q 005023 228 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDA---FSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 302 (718)
Q Consensus 228 ~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~A---y~~t-~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~-DAD 302 (718)
.+-||+| |..=++-.---|-|.-+.|++.|.+. |... +-+..++.++=.+||+++ |..+++.||.-. |.+
T Consensus 73 DlsGGwy----DAGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk-~~~~~~~~~~qVGdg~ 147 (614)
T PLN02340 73 DLVGGYY----DAGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIK-AHTQPNVLWGQVGDGD 147 (614)
T ss_pred CCCCCce----eCCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHH-hcCCCCeEEEEeCCCC
Confidence 4678888 44434444455899999999998874 4433 348889999999999998 666667777643 333
Q ss_pred cccccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCC
Q 005023 303 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 382 (718)
Q Consensus 303 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~ 382 (718)
.+ + +.|...|.... -+..|.|+
T Consensus 148 ~D-------H-----~~W~~PE~~~~-------~R~~y~i~--------------------------------------- 169 (614)
T PLN02340 148 SD-------H-----YCWERAEDMTT-------PRTAYKLD--------------------------------------- 169 (614)
T ss_pred cc-------c-----ccCCChhhcCC-------cCceeecC---------------------------------------
Confidence 31 1 13543221100 00000000
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005023 383 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 462 (718)
Q Consensus 383 ~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~ 462 (718)
...|. |+--+-+.+|||.|++++++. ...| ..++|+.|+++++
T Consensus 170 ---------------------~~~pg------Sd~a~e~AAAlAaas~vfk~~--D~~Y--------A~~lL~~Ak~ly~ 212 (614)
T PLN02340 170 ---------------------QNHPG------SDLAGETAAALAAASKAFKPY--NSSY--------SDLLLVHAKQLFS 212 (614)
T ss_pred ---------------------CCCCc------cHHHHHHHHHHHHHHHhccCC--CHHH--------HHHHHHHHHHHHH
Confidence 01122 222378899999999999851 1111 1467999999999
Q ss_pred HHHHhccccCCCeEEEeecCCCC--CCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005023 463 FIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQN 522 (718)
Q Consensus 463 ~l~~~~~d~~~g~l~~~~~~g~~--~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~ 522 (718)
|..++- |.+..+...+.. ...++- =.+++|.++||.+|||..|++.+.....
T Consensus 213 fA~~~~-----g~y~~s~~~a~~~Y~ss~~~---DEl~WAAawLy~ATgd~~Yl~~~~~~~~ 266 (614)
T PLN02340 213 FADKFR-----GLYDDSIQNAKKFYTSSGYS---DELLWAAAWLYRATGDEYYLKYVVDNAV 266 (614)
T ss_pred HHHhCC-----CCccCCCCccccCCCCCCcc---hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 998742 211100111110 012233 3568999999999999999999887644
No 87
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.04 E-value=0.002 Score=57.07 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=50.6
Q ss_pred hHHhhhh-hcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 4 RSFCGGT-KTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 4 ~a~~~Ak-~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
+.++... +.+++++. .+||+.|+.|... | .++++.+...+..+++|.++.+++-+. .|+.|.|+.
T Consensus 8 ~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~id~~~~~~~~~~--------~~i~~~P~~ 76 (103)
T cd03001 8 SNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALKGIVKVGAVDADVHQSLAQQ--------YGVRGFPTI 76 (103)
T ss_pred HhHHHHHhcCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCceEEEEECcchHHHHHH--------CCCCccCEE
Confidence 4455543 34555544 3899999999753 4 446667766677889999988766443 578899999
Q ss_pred EEeCCC
Q 005023 80 VFLSPD 85 (718)
Q Consensus 80 vfl~p~ 85 (718)
+|+.+.
T Consensus 77 ~~~~~~ 82 (103)
T cd03001 77 KVFGAG 82 (103)
T ss_pred EEECCC
Confidence 999765
No 88
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.01 E-value=0.015 Score=62.52 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF-LISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 529 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~-li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~ 529 (718)
++|++.|+++++++..+. ..+.|+++|... -+ .-.+.|--| ...=++.+-+.+++++|.+.+..-+....++..
T Consensus 98 ~~Yl~~a~~~a~~l~~~~-Rt~eG~f~H~~~--~p--~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~ 172 (357)
T COG4225 98 PRYLEAAIKLASWLVHEP-RTKEGGFQHKVK--YP--HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLR 172 (357)
T ss_pred HHHHHHHHHHHHHHhhCc-ccCCCccccccC--ch--hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcc
Confidence 899999999999999988 445688988633 11 122333333 334466788999999999999999999999999
Q ss_pred cccCCccccCCCCCCccccccccCCCCC---CCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhH
Q 005023 530 DREGGGYFNTTGEDPSVLLRVKEDHDGA---EPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAV 606 (718)
Q Consensus 530 D~~~Gg~f~t~~~~~~l~~r~k~~~D~a---~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~~~p~~~ 606 (718)
|+++|-||-.=+.+.. .++....-|. ---+|+=.+.+|..+=.+.... ++ -+....++++.....|.++-...
T Consensus 173 Dp~TGL~YH~wd~~~~--~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~-~~-~r~~l~~~l~d~v~al~r~Qde~ 248 (357)
T COG4225 173 DPETGLYYHGWDEDGT--MPWANNESGEPAFWARGNGWYAMALADLLELLPED-HP-DRRELLNVLRDLVDALIRYQDES 248 (357)
T ss_pred CCCcCceEEeeccCCC--CccccccCCCceeeecccchHHHHHHHHHHhCCCC-Cc-hHHHHHHHHHHHHHHHHHhhccc
Confidence 9999988843222211 1111111121 0125666667777776766542 12 34444555555555555544443
Q ss_pred HHHHH
Q 005023 607 PLMCC 611 (718)
Q Consensus 607 ~~~l~ 611 (718)
..|..
T Consensus 249 GlW~t 253 (357)
T COG4225 249 GLWHT 253 (357)
T ss_pred cchhh
Confidence 33333
No 89
>PLN02171 endoglucanase
Probab=97.00 E-value=0.027 Score=66.27 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc--ccc---CCCeEEEeecCCCCCCCCCccc
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL--YDE---QTHRLQHSFRNGPSKAPGFLDD 493 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~--~d~---~~g~l~~~~~~g~~~~~~~l~D 493 (718)
+-+.+|||.|++++++- ...| ..++|+.|+++++|..++- ++. ....+|. ...++-|
T Consensus 179 ~e~AAAlAaaS~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~-------s~s~y~D- 240 (629)
T PLN02171 179 GETAAAMAAASIVFRRS--NPGY--------ANELLTHAKQLFDFADKYRGKYDSSITVAQKYYR-------SVSGYGD- 240 (629)
T ss_pred HHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHhCCCcccCCCcccCCccC-------CCCCccH-
Confidence 77899999999999751 1111 1467999999999998752 110 0001111 0113333
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005023 494 YAFLISGLLDLYEFGSGTKWLVWAIELQN 522 (718)
Q Consensus 494 yA~li~all~LYeaTgd~~~L~~A~~L~~ 522 (718)
.+++|..+||.+|||..||+.+....+
T Consensus 241 --El~WAAawLy~ATgd~~Yl~~~~~~~~ 267 (629)
T PLN02171 241 --ELLWAAAWLYQATNNQYYLDYLGNNGD 267 (629)
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 568999999999999999998876544
No 90
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=97.00 E-value=0.0027 Score=72.06 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCC---Ccc
Q 005023 416 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG---FLD 492 (718)
Q Consensus 416 ~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~---~l~ 492 (718)
+-.+.++.|||.|++++++- ...| ..++|+.|+++++|..++--. . .........+ -..
T Consensus 154 ~~~~~~AAalA~As~v~k~~--d~~~--------A~~~L~~A~~~~~~a~~~~~~-----~---~~~~~~~~~~~Y~~~~ 215 (444)
T PF00759_consen 154 DATAEFAAALAAASRVFKDF--DPAY--------AAQCLKAAKEAYAFAKKNPGV-----Y---SDNPQPNGGGFYNSSG 215 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--THHH--------HHHHHHHHHHHHHHHHHSTTH-----G---GGTSTCTTTTTSHCS-
T ss_pred HHHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCCCc-----c---cCCcccccCCcccCCC
Confidence 33578899999999999861 0111 157899999999999876411 1 0111010110 022
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 005023 493 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 524 (718)
Q Consensus 493 DyA~li~all~LYeaTgd~~~L~~A~~L~~~~ 524 (718)
..-.+++|.++||++|+++.|++.|.+....+
T Consensus 216 ~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 216 YEDELAWAAAELYRATGDESYLDYAKEYYDDL 247 (444)
T ss_dssp SHHHHHHHHHHHHHHHT-HHHHHHHHHHCCTS
T ss_pred cccHHHHHHHHHHHhcCcHHHHHHHHHhHHhh
Confidence 33457899999999999999999998876443
No 91
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0013 Score=59.99 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=48.6
Q ss_pred HHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEE
Q 005023 5 SFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 81 (718)
Q Consensus 5 a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vf 81 (718)
..+.+...+|+|++ .+||+.|+.|+.. =.+++.-.++ =+-+|||.||-+++.+- .++.+.||.+|
T Consensus 13 ~~~~~~~~~kliVvdF~a~wCgPCk~i~P~---~~~La~~y~~-v~Flkvdvde~~~~~~~--------~~V~~~PTf~f 80 (106)
T KOG0907|consen 13 VLSAAEAGDKLVVVDFYATWCGPCKAIAPK---FEKLAEKYPD-VVFLKVDVDELEEVAKE--------FNVKAMPTFVF 80 (106)
T ss_pred HHHHhhCCCCeEEEEEECCCCcchhhhhhH---HHHHHHHCCC-CEEEEEecccCHhHHHh--------cCceEeeEEEE
Confidence 34555566799876 3899999999951 1233333333 67789999994333333 57789999999
Q ss_pred eCCCCcee
Q 005023 82 LSPDLKPL 89 (718)
Q Consensus 82 l~p~g~p~ 89 (718)
+ .+|+.+
T Consensus 81 ~-k~g~~~ 87 (106)
T KOG0907|consen 81 Y-KGGEEV 87 (106)
T ss_pred E-ECCEEE
Confidence 9 466655
No 92
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.97 E-value=0.0015 Score=53.61 Aligned_cols=61 Identities=28% Similarity=0.365 Sum_probs=41.6
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceeecc
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 92 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~~~ 92 (718)
+..+||++|+.|.+ .+ .++++ .+.++-..++|.++.|++.+. +|..+.|+.+| +|+.++.|
T Consensus 6 f~~~~C~~C~~~~~-~l--~~l~~-~~~~i~~~~id~~~~~~l~~~--------~~i~~vPti~i---~~~~~~~g 66 (67)
T cd02973 6 FVSPTCPYCPDAVQ-AA--NRIAA-LNPNISAEMIDAAEFPDLADE--------YGVMSVPAIVI---NGKVEFVG 66 (67)
T ss_pred EECCCCCCcHHHHH-HH--HHHHH-hCCceEEEEEEcccCHhHHHH--------cCCcccCEEEE---CCEEEEec
Confidence 44699999999874 33 23332 244567778888887765443 68889999866 56776644
No 93
>PLN03009 cellulase
Probab=96.94 E-value=0.02 Score=65.70 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=46.6
Q ss_pred cCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHH---HHHccCChHHHHHHHHHHHHHHHhccCCCCceeeec
Q 005023 228 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAE 299 (718)
Q Consensus 228 ~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~---Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~ 299 (718)
.+-||+|-=-.--+..+| |-|.-..|++.|.+ +|...+-|..++.++=.++|+++ |+.++|+||.-.
T Consensus 71 DlsGGwyDAGD~~Ky~~p----~a~s~~~L~w~~~~f~d~~~~~~~~diLdeikw~~D~llk-m~~~~~~~y~qV 140 (495)
T PLN03009 71 DLTGGYYDAGDNVKFGFP----MAFTTTMLAWSVIEFGDLMPSSELRNSLVAIRWATDYLLK-TVSQPNRIFVQV 140 (495)
T ss_pred cCCCcceeCCCCceeccc----hHHHHHHHHHHHHHhHhhCCccccHHHHHHHHHHHHHHHH-cccCcCeEEEEe
Confidence 356777741111223344 77877888887766 55556778899999999999998 766678888743
No 94
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0019 Score=68.27 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=61.6
Q ss_pred cCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCce
Q 005023 12 TRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 88 (718)
Q Consensus 12 e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p 88 (718)
..+||+++ .||+.|+.+.. .=..++.--+-.|+-+|||.++.|+|... +|+.+.|+.|.+- ||+|
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p---~Lekla~~~~G~f~LakvN~D~~p~vAaq--------fgiqsIPtV~af~-dGqp 109 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTP---TLEKLAAEYKGKFKLAKVNCDAEPMVAAQ--------FGVQSIPTVYAFK-DGQP 109 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHH---HHHHHHHHhCCceEEEEecCCcchhHHHH--------hCcCcCCeEEEee-CCcC
Confidence 35688775 66777766653 22345555567799999999999999887 7899999987665 9999
Q ss_pred eecc-cccCCCCCCCcccHHHHHHHHHHH
Q 005023 89 LMGG-TYFPPEDKYGRPGFKTILRKVKDA 116 (718)
Q Consensus 89 ~~~~-~y~p~~~~~~~~~f~~~L~~i~~~ 116 (718)
+-+. +-.|.+ ...+.|+++...
T Consensus 110 VdgF~G~qPes------qlr~~ld~~~~~ 132 (304)
T COG3118 110 VDGFQGAQPES------QLRQFLDKVLPA 132 (304)
T ss_pred ccccCCCCcHH------HHHHHHHHhcCh
Confidence 9764 334433 466666666444
No 95
>PLN02308 endoglucanase
Probab=96.93 E-value=0.03 Score=64.15 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCC-CC---CCCCCcccH
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PS---KAPGFLDDY 494 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g-~~---~~~~~l~Dy 494 (718)
+.+++|||.|++++.+- ...|. .++|+.|+++++|..++- |.+..+.... .+ ...++.
T Consensus 175 ~~~AAAlA~as~vf~~~--D~~YA--------~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~~Y~~~s~~~--- 236 (492)
T PLN02308 175 GETAAALAAASIVFRKR--DPAYS--------RLLLDRAVRVFAFADKYR-----GAYSSSLHAAVCPFYCDFNGYQ--- 236 (492)
T ss_pred HHHHHHHHHHHHhcccc--CHHHH--------HHHHHHHHHHHHHHHHcC-----CcccCCCCcccCCCcCCCCccc---
Confidence 78899999999999841 01111 468999999999998752 2111000000 00 001222
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 005023 495 AFLISGLLDLYEFGSGTKWLVWAIEL 520 (718)
Q Consensus 495 A~li~all~LYeaTgd~~~L~~A~~L 520 (718)
=.+++|..+||.+|||..||+.+...
T Consensus 237 DEl~WAAawLy~ATgd~~Yl~~~~~~ 262 (492)
T PLN02308 237 DELLWGAAWLHKASRRREYREYIVKN 262 (492)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35689999999999999999987654
No 96
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=96.87 E-value=0.0023 Score=62.18 Aligned_cols=66 Identities=11% Similarity=0.215 Sum_probs=38.3
Q ss_pred EcCCchhhhhhccccCcHHHHHHhhc---ccEEEEecCCCCcchHHHH---HHHHHHhc---CCCCCCcEEEeCCCCcee
Q 005023 19 INTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVY---MTYVQALY---GGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 19 y~~C~wChvM~~esf~d~~va~~ln~---~Fv~vkvD~ee~pd~d~~y---~~~~q~~~---g~~GwP~~vfl~p~g~p~ 89 (718)
.+||.+|+.+. |.+.++-++ .+|.|-+|....+.....+ ....+..+ |..|.|++++++++|+.+
T Consensus 59 AsWCppCr~e~------P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i 132 (153)
T TIGR02738 59 QSTCPYCHQFA------PVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKA 132 (153)
T ss_pred CCCChhHHHHH------HHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEE
Confidence 59999999864 444444333 3556656543211111111 11122234 678999999999998865
Q ss_pred e
Q 005023 90 M 90 (718)
Q Consensus 90 ~ 90 (718)
.
T Consensus 133 ~ 133 (153)
T TIGR02738 133 Y 133 (153)
T ss_pred E
Confidence 3
No 97
>PLN02345 endoglucanase
Probab=96.84 E-value=0.023 Score=64.69 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC--CCCCCcccHHH
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAF 496 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~--~~~~~l~DyA~ 496 (718)
+-+.+|||.|++++++. ...| ..++|+.|+++++|..++- |.+..+..++.. ...++-| .
T Consensus 145 ~~~AAAlA~as~vfk~~--D~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~Y~s~~~~D---E 206 (469)
T PLN02345 145 AETAAAMAAASLVFKSS--DSTY--------SDTLLKHAKQLFNFADKYR-----GSYSESIPEVQDYYNSTGYGD---E 206 (469)
T ss_pred HHHHHHHHHHHHHhccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CcccCCCCccCCCCCCccccc---H
Confidence 77899999999999861 0111 1467999999999998752 111111001000 1122333 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q 005023 497 LISGLLDLYEFGSGTKWLVWAI 518 (718)
Q Consensus 497 li~all~LYeaTgd~~~L~~A~ 518 (718)
+++|.++||.+|||..|++.+.
T Consensus 207 l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 207 LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 6899999999999999999875
No 98
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.84 E-value=0.13 Score=59.55 Aligned_cols=291 Identities=17% Similarity=0.167 Sum_probs=159.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceEee
Q 005023 241 RWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVW 320 (718)
Q Consensus 241 ~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~DADs~~~~~~~~~~EG~yY~W 320 (718)
.-.|+-||-... .|-.++-||.+++++.|++.|.+..+-|+.-+..|.|-=++..+-... . .....|
T Consensus 148 ~~~vsvFEttIR----~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g--------~-~~~~~~ 214 (522)
T PTZ00470 148 GLGVSVFETTIR----VLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG--------R-KSYPGW 214 (522)
T ss_pred CCeeeeeeeehh----hHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC--------C-CCCccc
Confidence 345678996665 888888899999999999999999999998876666643333322110 0 000112
Q ss_pred chHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCc-hHHHHhcCCC-HHHHHHHHHHHHHHHH
Q 005023 321 TSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS-SASASKLGMP-LEKYLNILGECRRKLF 398 (718)
Q Consensus 321 t~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~-~~~a~~~g~~-~~~~~~~l~~~r~~L~ 398 (718)
.. +..++.-..++ -|+.....++ ..+..+..+.+.+.|.
T Consensus 215 ~~---------------------------------------~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~ 255 (522)
T PTZ00470 215 AG---------------------------------------GCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALF 255 (522)
T ss_pred CC---------------------------------------CccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 10 00011100000 0111111111 1344555666667776
Q ss_pred hhhccCCCCCCCchhh-----------hchHHHH---HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHH
Q 005023 399 DVRSKRPRPHLDDKVI-----------VSWNGLV---ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFI 464 (718)
Q Consensus 399 ~~R~~R~~P~~Ddkil-----------t~WNgl~---I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l 464 (718)
+.|... |.+=...| .+|-|+. -.=|.+.+..++. .++.|.++-.++++-+
T Consensus 256 ~~~~~~--~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~--------------~d~~~~~~~~~a~~~i 319 (522)
T PTZ00470 256 SMKPAI--NGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNG--------------REERYRRLFVESAKGI 319 (522)
T ss_pred hcCCCC--CCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCC--------------CcHHHHHHHHHHHHHH
Confidence 544321 22111111 1121211 1245566666653 1267888888888888
Q ss_pred HHhcccc-CCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHH-------cCChHHHHHHHHHHHHHHHhcccccCCc-
Q 005023 465 RRHLYDE-QTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEF-------GSGTKWLVWAIELQNTQDELFLDREGGG- 535 (718)
Q Consensus 465 ~~~~~d~-~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYea-------Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg- 535 (718)
.+++... .++.++..-.+|.. .....+--++++-|++.|.-. ..+++|++.|++|.+.+...+....+|-
T Consensus 320 ~~~l~~~s~~~~~~v~~~~~~~-~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~~~tGl~ 398 (522)
T PTZ00470 320 IEHLYKRSPKGLTYIAEMDGGS-LTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLG 398 (522)
T ss_pred HHHhcccCCCCcEEEeeccCCc-CcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 8886432 23434433223321 222334446677888888642 2456899999999999988775544542
Q ss_pred ---cccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005023 536 ---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLM 609 (718)
Q Consensus 536 ---~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~~~p~~~~~~ 609 (718)
|.+.... ..... ...|...+= --..++.+.-|+++||+ +.|++.+.++++++.... +.+.|++.+
T Consensus 399 PE~~~~~~~~-~~~~~---~~~d~~Y~L-RPE~iES~fylyR~TgD---~~yre~gW~~f~ai~k~~-rt~~Gya~i 466 (522)
T PTZ00470 399 PEIFHFDPNS-GDISP---NVHDSHYIL-RPETVESIFILYRLTGD---PKYREWAWKIFQAIEKHC-KTENGYSGL 466 (522)
T ss_pred CceEEeccCc-ccccc---ccCCCCCCC-ChhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh-cCCcccccc
Confidence 2221110 00000 001111100 12578889999999996 899999999999976654 567776654
No 99
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=96.81 E-value=0.068 Score=58.27 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=70.5
Q ss_pred HHHHHHHhcccccCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCC---cc--------
Q 005023 159 LCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HD-------- 227 (718)
Q Consensus 159 ~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi---~D-------- 227 (718)
++++.|.+.-.+ .|||+..+ +....-.+.+........ .+...+.+.+.++-|..-.+ -+
T Consensus 3 ~~~~~L~~~Q~~-dG~W~~~~--~~~~~Ta~~~~al~~~g~------~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~ 73 (348)
T cd02889 3 RALDFLLSLQAP-DGHWPGEY--SQVWDTALALQALLEAGL------APEFDPALKKALEWLLKSQIRDNPDDWKVKYRH 73 (348)
T ss_pred hHHHHHHHhccC-CCCccccC--CchHHHHHHHHHHHHcCC------CCccCHHHHHHHHHHHhcCCCCCCCchhhcCCC
Confidence 445666665555 69998876 332222233333222111 01233445555555544332 12
Q ss_pred cCCCcEEEEecCCC-CCCCCCcchHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 005023 228 HVGGGFHRYSVDER-WHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 297 (718)
Q Consensus 228 ~v~GGF~RYsvD~~-W~vPHFEKmLyDnA~ll~~ya~Ay~~t~--~~~y~~~A~~~~~~l~~~m~~p~Ggf~s 297 (718)
.-.||+- |+.... |.. ..+.|..+.+++.+....+ ++.+.+.+.++++||.+ .+.++|+|..
T Consensus 74 ~~~Ggw~-y~~~~~~~~~------~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q~~dG~f~~ 138 (348)
T cd02889 74 LRKGGWA-FSTANQGYPD------SDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLS-MQNSNGGFAA 138 (348)
T ss_pred CCCCcCc-ccCcCCCCCC------CCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHH-hccCCCCEee
Confidence 3344443 554322 221 2378999999998888763 57889999999999997 4778999864
No 100
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.80 E-value=0.0026 Score=56.07 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=49.4
Q ss_pred hcCCcE----EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCC
Q 005023 11 KTRRTH----FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 86 (718)
Q Consensus 11 ~e~K~i----i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g 86 (718)
+=++|| |...||+||..+.+-. .++++ .+.++-..++|.++.|++... +|+.+.|+.++ ||
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~~~~~---~~l~~-~~~~i~~~~vd~~~~~e~a~~--------~~V~~vPt~vi---dG 73 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDVVQAL---NLMAV-LNPNIEHEMIDGALFQDEVEE--------RGIMSVPAIFL---NG 73 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHHHHHH---HHHHH-HCCCceEEEEEhHhCHHHHHH--------cCCccCCEEEE---CC
Confidence 346665 4469999999877533 66664 445688888999998877776 67889999987 78
Q ss_pred ceeecc
Q 005023 87 KPLMGG 92 (718)
Q Consensus 87 ~p~~~~ 92 (718)
+..+.|
T Consensus 74 ~~~~~G 79 (89)
T cd03026 74 ELFGFG 79 (89)
T ss_pred EEEEeC
Confidence 887654
No 101
>PTZ00102 disulphide isomerase; Provisional
Probab=96.79 E-value=0.0019 Score=73.67 Aligned_cols=68 Identities=15% Similarity=0.320 Sum_probs=50.6
Q ss_pred hhcCCcEEE---EcCCchhhhhhccccCcHHHHHHh--hcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCC
Q 005023 10 TKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 84 (718)
Q Consensus 10 k~e~K~ii~---y~~C~wChvM~~esf~d~~va~~l--n~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p 84 (718)
.+++|++++ .+||++|+.|+. +|++ +++.+ +.+++..+||.+..+.+.+. .+..|+|+.+|+.+
T Consensus 372 ~~~~k~vlv~f~a~wC~~C~~~~p-~~~~--~a~~~~~~~~v~~~~id~~~~~~~~~~--------~~v~~~Pt~~~~~~ 440 (477)
T PTZ00102 372 FKSDKDVLLEIYAPWCGHCKNLEP-VYNE--LGEKYKDNDSIIVAKMNGTANETPLEE--------FSWSAFPTILFVKA 440 (477)
T ss_pred hcCCCCEEEEEECCCCHHHHHHHH-HHHH--HHHHhccCCcEEEEEEECCCCccchhc--------CCCcccCeEEEEEC
Confidence 677898876 389999999975 5653 44444 34688889999887655433 46789999999998
Q ss_pred CCce
Q 005023 85 DLKP 88 (718)
Q Consensus 85 ~g~p 88 (718)
+++.
T Consensus 441 ~~~~ 444 (477)
T PTZ00102 441 GERT 444 (477)
T ss_pred CCcc
Confidence 7763
No 102
>PLN02420 endoglucanase
Probab=96.76 E-value=0.051 Score=62.71 Aligned_cols=189 Identities=16% Similarity=0.202 Sum_probs=108.1
Q ss_pred cCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHH---HHHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeec-cCC
Q 005023 228 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 302 (718)
Q Consensus 228 ~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~---Ay~~t-~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~-DAD 302 (718)
.+-||+| |..=.+-.---|-|.-+.|++.|.+ +|... +-|.+++.++-.+||+++ |+...+.||.-. |.+
T Consensus 84 DlsGGwy----DAGD~~Kf~~p~a~t~~~L~w~~~ef~d~~~~~g~~~d~Ldeikw~lD~llk-~~~~~~~~~~qvGdg~ 158 (525)
T PLN02420 84 DLVGGYH----DAGDHVKFGLPMAFTVTMLSWSVIEYGDQLASTGELSHALEAIKWGTDYFIK-AHTSPNVLWAEVGDGD 158 (525)
T ss_pred cCCCcce----ecCccceecchHHHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHH-hCcCCCceEEeeCCCC
Confidence 4567887 3333343334488888888888765 34443 358889999999999998 665557776642 222
Q ss_pred cccccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCC
Q 005023 303 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 382 (718)
Q Consensus 303 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~ 382 (718)
.+ + +| |...|... ..+.+..+
T Consensus 159 ~D-------H----~~-w~~Pe~~~---------------------------------~~R~~~~i-------------- 179 (525)
T PLN02420 159 TD-------H----YC-WQRPEDMT---------------------------------TSRRAFKI-------------- 179 (525)
T ss_pred cc-------c----cc-ccChhhcc---------------------------------ccCceEEe--------------
Confidence 21 1 22 54332110 00000000
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005023 383 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 462 (718)
Q Consensus 383 ~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~ 462 (718)
.-..|..| --+-+.+|||.|++++++- ...| ..++|+.|+++++
T Consensus 180 --------------------~~~~pgsd------~aa~~AAALA~AS~vfk~~--D~~Y--------A~~~L~~Ak~ly~ 223 (525)
T PLN02420 180 --------------------DENNPGSD------IAGETAAAMAAASIVFRST--NPHY--------SHLLLHHAQQLFE 223 (525)
T ss_pred --------------------cCCCCccH------HHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHH
Confidence 00122222 2277899999999999861 0111 1467999999999
Q ss_pred HHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005023 463 FIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 521 (718)
Q Consensus 463 ~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~ 521 (718)
|..++- |.+-.....+.+.-......+-.+++|.++||.+|||..|++.+.+..
T Consensus 224 fA~~~~-----g~y~~~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~a~~~~ 277 (525)
T PLN02420 224 FGDKYR-----GKYDESLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYMSYVVDMA 277 (525)
T ss_pred HHHhcC-----CccCCCCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 987531 111000000000001111123567899999999999999999887644
No 103
>PLN02909 Endoglucanase
Probab=96.76 E-value=0.058 Score=61.68 Aligned_cols=180 Identities=15% Similarity=0.141 Sum_probs=106.6
Q ss_pred cCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHH---HHHHccC-ChHHHHHHHHHHHHHHHhccCCCCceeeecc-CC
Q 005023 228 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYL---DAFSLTK-DVFYSYICRDILDYLRRDMIGPGGEIFSAED-AD 302 (718)
Q Consensus 228 ~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya---~Ay~~t~-~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~D-AD 302 (718)
.+.||+|- ..=++-.---|-|.-+.|++.|. ++|+..+ -|..++.++-.++||++ |+.++|+||.-.- .+
T Consensus 77 DlsGGwyD----AGD~~Kf~~p~a~s~~~L~w~~~~y~~~~~~~g~~~d~ldeikw~~D~llk-~~~~~~~~y~qVg~~~ 151 (486)
T PLN02909 77 DLVGGYYD----AGDNVKYGLPMAFTVTTLAWSTLAYEKELRATGELENVRAAIRWGTDYFLK-AASRKNRLYVQVGDPN 151 (486)
T ss_pred CCCCCcee----CCCCceeCCchHHHHHHHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHH-hccCCCeEEEEeCCCC
Confidence 46788884 33233333347777777776654 4555543 48889999999999998 7777788887431 11
Q ss_pred cccccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCC
Q 005023 303 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 382 (718)
Q Consensus 303 s~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~ 382 (718)
. .+ ..|..-|... .-+.+..+
T Consensus 152 ~----------Dh--~~W~~Pe~~~---------------------------------~~R~~~~i-------------- 172 (486)
T PLN02909 152 L----------DH--QCWVRPENMK---------------------------------TPRTVLEI-------------- 172 (486)
T ss_pred C----------Cc--ccCCChhhcc---------------------------------CCceeEec--------------
Confidence 1 01 1143322110 00111000
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005023 383 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 462 (718)
Q Consensus 383 ~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~ 462 (718)
....|..| --+-+.+|||.|++++++- ...| ..++|+.|+++++
T Consensus 173 --------------------~~~~pgtd------~a~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~ 216 (486)
T PLN02909 173 --------------------DEKTPGTE------IAAETAAAMAASSMVFRHV--DHKY--------SRRLLNKAKLLFK 216 (486)
T ss_pred --------------------CCCCCCcH------HHHHHHHHHHHHHHhhccC--CHHH--------HHHHHHHHHHHHH
Confidence 01123333 2378899999999999861 1111 1467999999999
Q ss_pred HHHHhccccCCCeEEEeecCCCC---CCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 005023 463 FIRRHLYDEQTHRLQHSFRNGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIE 519 (718)
Q Consensus 463 ~l~~~~~d~~~g~l~~~~~~g~~---~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~ 519 (718)
|..++= |. +. +..+ ...++.| .+++|..+||.+|||..|++.+..
T Consensus 217 fA~~~~-----g~-y~---~~~~~y~s~s~y~D---El~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 217 FAKAHK-----GT-YD---GECPFYCSYSGYND---ELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHhCC-----CC-cC---CCCCccccCCCcch---HHHHHHHHHHHHhCCHHHHHHHHh
Confidence 998752 11 10 1111 1123333 568899999999999999997764
No 104
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.75 E-value=0.0035 Score=58.42 Aligned_cols=69 Identities=22% Similarity=0.171 Sum_probs=44.4
Q ss_pred CCcEEE---E-------cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCc---chHHHHHHHHHHhcCCC-CCCc
Q 005023 13 RRTHFL---I-------NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP---DVDKVYMTYVQALYGGG-GWPL 78 (718)
Q Consensus 13 ~K~ii~---y-------~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~p---d~d~~y~~~~q~~~g~~-GwP~ 78 (718)
++++++ . +||+.|++|+. +++ ++++....+..-++||.++.| +...-+.. -.++. |.||
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P-~l~--~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~----~~~I~~~iPT 93 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEP-VVR--EALKAAPEDCVFIYCDVGDRPYWRDPNNPFRT----DPKLTTGVPT 93 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhch-hHH--HHHHHCCCCCEEEEEEcCCcccccCcchhhHh----ccCcccCCCE
Confidence 678765 3 59999999985 332 355555545777889988865 22222222 14566 9999
Q ss_pred EEEeCCCCcee
Q 005023 79 SVFLSPDLKPL 89 (718)
Q Consensus 79 ~vfl~p~g~p~ 89 (718)
.+++.. |+.+
T Consensus 94 ~~~~~~-~~~l 103 (119)
T cd02952 94 LLRWKT-PQRL 103 (119)
T ss_pred EEEEcC-Ccee
Confidence 999954 3433
No 105
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.74 E-value=0.0015 Score=60.03 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=45.2
Q ss_pred HhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhh-cccEEEEecCCCCcchHHHHH-------------HHHH
Q 005023 6 FCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM-------------TYVQ 68 (718)
Q Consensus 6 ~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln-~~Fv~vkvD~ee~pd~d~~y~-------------~~~q 68 (718)
++.+...+|++++ ++||..|+.|... +.++.+ -.+|.|.+|.+.+..+.+... ..+.
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~------l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPT------VNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVIS 86 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChH------HHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHH
Confidence 4445555677754 5899999998532 222221 123444444331111111000 0011
Q ss_pred HhcCCCCCCcEEEeCCCCceeec-ccccCC
Q 005023 69 ALYGGGGWPLSVFLSPDLKPLMG-GTYFPP 97 (718)
Q Consensus 69 ~~~g~~GwP~~vfl~p~g~p~~~-~~y~p~ 97 (718)
..++..+.|+++|++++| +... .++.++
T Consensus 87 ~~~~i~~~P~~~vid~~g-i~~~~~g~~~~ 115 (123)
T cd03011 87 ARWGVSVTPAIVIVDPGG-IVFVTTGVTSE 115 (123)
T ss_pred HhCCCCcccEEEEEcCCC-eEEEEeccCCH
Confidence 136889999999999999 5543 345554
No 106
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.73 E-value=0.0025 Score=58.69 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=47.5
Q ss_pred HHhhhh-hcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc---ccEEEEecCCC--CcchHHHHHHHHHHhcCCCC
Q 005023 5 SFCGGT-KTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREE--RPDVDKVYMTYVQALYGGGG 75 (718)
Q Consensus 5 a~~~Ak-~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~---~Fv~vkvD~ee--~pd~d~~y~~~~q~~~g~~G 75 (718)
.+++.- ..+|++|+ .+||+.|+.|.. +|++ +++.+.+ .+...+||.+. .+++.+. +|..+
T Consensus 10 ~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~-~~~~--la~~~~~~~~~v~~~~vd~~~~~~~~~~~~--------~~i~~ 78 (114)
T cd02992 10 SFNSALLGSPSAWLVEFYASWCGHCRAFAP-TWKK--LARDLRKWRPVVRVAAVDCADEENVALCRD--------FGVTG 78 (114)
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHHhH-HHHH--HHHHHHhcCCceEEEEEeccchhhHHHHHh--------CCCCC
Confidence 344443 34567766 389999999985 5654 6776653 24456788543 3333322 57889
Q ss_pred CCcEEEeCCCCcee
Q 005023 76 WPLSVFLSPDLKPL 89 (718)
Q Consensus 76 wP~~vfl~p~g~p~ 89 (718)
+|+.+|+.+..+..
T Consensus 79 ~Pt~~lf~~~~~~~ 92 (114)
T cd02992 79 YPTLRYFPPFSKEA 92 (114)
T ss_pred CCEEEEECCCCccC
Confidence 99999997665333
No 107
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.70 E-value=0.0055 Score=57.53 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=49.1
Q ss_pred hHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc---ccEEEEecCCCCcc-hHHHHH------------
Q 005023 4 RSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPD-VDKVYM------------ 64 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~---~Fv~vkvD~ee~pd-~d~~y~------------ 64 (718)
+-+..+.-++|++++ .+||+.|+.+..+ ++ ++.+.+.+ .+..|-|+.++.++ +.+.+.
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~-l~--~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d 84 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPK-LV--EFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFED 84 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHH-HH--HHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCc
Confidence 344555556888866 4899999986532 11 12223333 34444444444332 111111
Q ss_pred ----HHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 65 ----TYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 65 ----~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
..+...+|..|.|+++|++++|+++.
T Consensus 85 ~~~~~~~~~~~~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 85 EELRELLEKQFKVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCEEc
Confidence 12233478899999999999999885
No 108
>PLN00119 endoglucanase
Probab=96.66 E-value=0.051 Score=62.20 Aligned_cols=84 Identities=13% Similarity=0.051 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-cCCCCCCCCCcccHHHH
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 497 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~-~~g~~~~~~~l~DyA~l 497 (718)
+-+.+|||.|++++.+- ...| ..++|+.|+++++|..++- |. +... .++...-.. ...+-.+
T Consensus 180 ~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~fA~~~~-----g~-y~~~~~~~~g~Y~s-s~~~DEl 242 (489)
T PLN00119 180 GETAAAMAAASIAFAPS--DPAY--------ASILIGHAKDLFEFAKAHP-----GL-YQNSIPNAGGFYAS-SGYEDEL 242 (489)
T ss_pred HHHHHHHHHHHHHcccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----Cc-ccCCCCCCCCCCCC-CchhhHH
Confidence 78899999999999851 0011 1467999999999998741 11 1110 111110000 1223468
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 005023 498 ISGLLDLYEFGSGTKWLVWAIE 519 (718)
Q Consensus 498 i~all~LYeaTgd~~~L~~A~~ 519 (718)
++|.++||.+|||..|++.+..
T Consensus 243 ~WAAawLY~aTgd~~Yl~~~~~ 264 (489)
T PLN00119 243 LWAAAWLHRATNDQTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHHHhCCHHHHHHHHh
Confidence 8999999999999999987553
No 109
>PLN02613 endoglucanase
Probab=96.62 E-value=0.049 Score=62.56 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC---CCCCCcc
Q 005023 416 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---KAPGFLD 492 (718)
Q Consensus 416 ~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~---~~~~~l~ 492 (718)
+.-+-+.+|||.|++++++- ...| ..++|+.|+++++|..++- |.+. +..+ ...++.|
T Consensus 172 d~a~~~AAALAaas~vfk~~--D~~y--------A~~~L~~Ak~ly~~a~~~~-----g~y~----~~~~~y~s~s~~~D 232 (498)
T PLN02613 172 EAAGEAAAALAAASLVFKDV--DSSY--------SSKLLNHARSLFEFADKYR-----GSYQ----ASCPFYCSYSGYQD 232 (498)
T ss_pred HHHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCcC----CCCCcccccCccch
Confidence 34478999999999999861 0111 1467999999999998651 1111 1111 0123334
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHH
Q 005023 493 DYAFLISGLLDLYEFGSGTKWLVWAIE 519 (718)
Q Consensus 493 DyA~li~all~LYeaTgd~~~L~~A~~ 519 (718)
+ +++|.++||.+|||+.|++.+..
T Consensus 233 E---l~WAAawLy~aTGd~~Yl~~~~~ 256 (498)
T PLN02613 233 E---LLWAAAWLYKATGEKKYLNYVIS 256 (498)
T ss_pred H---HHHHHHHHHHHhCCHHHHHHHHh
Confidence 4 57789999999999999987764
No 110
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.61 E-value=0.005 Score=57.12 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=48.5
Q ss_pred HhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcc-cEEEEecCCCCc-chHHHHHH--------------H
Q 005023 6 FCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERP-DVDKVYMT--------------Y 66 (718)
Q Consensus 6 ~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~-Fv~vkvD~ee~p-d~d~~y~~--------------~ 66 (718)
+..+.-++|++++ .+||+.|+.|. |.+.++-++. +..|-|+.+..+ .+.+...+ .
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~------~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 91 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEH------PVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR 91 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHH------HHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch
Confidence 4444445788766 38999999876 3444443333 444444432221 11111000 0
Q ss_pred HHHhcCCCCCCcEEEeCCCCceeecc-cccCC
Q 005023 67 VQALYGGGGWPLSVFLSPDLKPLMGG-TYFPP 97 (718)
Q Consensus 67 ~q~~~g~~GwP~~vfl~p~g~p~~~~-~y~p~ 97 (718)
+...+|+.++|+++|++++|+..... ++++.
T Consensus 92 ~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 92 VGIDLGVYGVPETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred HHHhcCCCCCCeEEEECCCceEEEEEeccCCh
Confidence 11236888999999999999988642 45543
No 111
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.58 E-value=0.0078 Score=54.48 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=44.9
Q ss_pred cCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCc-chHHH------------HHHHHHHhcCCCC
Q 005023 12 TRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-DVDKV------------YMTYVQALYGGGG 75 (718)
Q Consensus 12 e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~p-d~d~~------------y~~~~q~~~g~~G 75 (718)
++|+++. .+||+.|+.+... ++ ++.+.....+..|.|- +..+ +..+. +-..+...+|..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~-l~--~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 95 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPV-IR--SIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSK 95 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHH-HH--HHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCC
Confidence 4788866 3899999997643 32 2444444444444441 2211 11111 1112233467889
Q ss_pred CCcEEEeCCCCceeecc
Q 005023 76 WPLSVFLSPDLKPLMGG 92 (718)
Q Consensus 76 wP~~vfl~p~g~p~~~~ 92 (718)
.|++++++++|+..+.+
T Consensus 96 ~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 96 LPYAVLLDEAGVIAAKG 112 (114)
T ss_pred cCeEEEECCCCeEEecc
Confidence 99999999999988643
No 112
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.56 E-value=0.0044 Score=56.96 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=52.0
Q ss_pred hhcCCcEEE--EcC--CchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCC
Q 005023 10 TKTRRTHFL--INT--CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 85 (718)
Q Consensus 10 k~e~K~ii~--y~~--C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~ 85 (718)
.+.++.|+- ..| |+.|+.|+. . =+++++.+......++||.++.|.+... +|+.|+||.+|+. +
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P-~--leela~e~~~~v~f~kVdid~~~~la~~--------f~V~sIPTli~fk-d 92 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAV-V--LPELLKAFPGRFRAAVVGRADEQALAAR--------FGVLRTPALLFFR-D 92 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHh-H--HHHHHHHCCCcEEEEEEECCCCHHHHHH--------cCCCcCCEEEEEE-C
Confidence 344555543 354 999999985 2 2456766665566789999999987776 6889999998887 8
Q ss_pred Cceeec
Q 005023 86 LKPLMG 91 (718)
Q Consensus 86 g~p~~~ 91 (718)
|+++..
T Consensus 93 Gk~v~~ 98 (111)
T cd02965 93 GRYVGV 98 (111)
T ss_pred CEEEEE
Confidence 998854
No 113
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=96.50 E-value=0.011 Score=62.77 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHH
Q 005023 421 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 500 (718)
Q Consensus 421 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~a 500 (718)
+|..|++||+|+++ ++|++.|.++++-+++.-.-..+-++-| |.+ | + .++
T Consensus 285 v~~~L~kAy~VF~E----------------ekyl~aa~ecadvVW~rGlLkkg~Gich----Gva---G--N-----aYv 334 (403)
T KOG2787|consen 285 VAYTLAKAYQVFKE----------------EKYLEAAMECADVVWKRGLLKKGVGICH----GVA---G--N-----AYV 334 (403)
T ss_pred HHHHHHHHHHHhhH----------------HHHHHHHHHHHHHHHHhhhhhcCCcccc----ccc---C--c-----hhh
Confidence 67789999999997 7999999999999986532222223333 221 1 1 245
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005023 501 LLDLYEFGSGTKWLVWAIELQNTQDEL 527 (718)
Q Consensus 501 ll~LYeaTgd~~~L~~A~~L~~~~~~~ 527 (718)
+|.||++|+|.+||.+|.+.++.+.+.
T Consensus 335 FLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 335 FLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred hHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999998764
No 114
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=96.46 E-value=0.26 Score=53.98 Aligned_cols=137 Identities=11% Similarity=0.072 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCC-CCCCCCCcccHHHHHH
Q 005023 421 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFLIS 499 (718)
Q Consensus 421 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g-~~~~~~~l~DyA~li~ 499 (718)
++++|...+..+++ +++.+.+.++.+++.+.. .+ .|.+.....+. ......+...-+=.+.
T Consensus 170 I~~~L~~~~~~~~~----------------~~~~~~i~~~i~~~~~~~-~~-~g~w~~~~~~~~~~~~~~wChG~~Gi~~ 231 (343)
T cd04794 170 ILYILLQTPLFLLK----------------PSLAPLIKRSLDYLLSLQ-FP-SGNFPSSLGNRKRDRLVQWCHGAPGIVY 231 (343)
T ss_pred HHHHHHhhhhhcCC----------------ccHHHHHHHHHHHHHHhh-cc-CCCCCCccCCCCCCccccccCCCchHHH
Confidence 46678888888766 689999999999998763 32 34322111110 1111123333344678
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 005023 500 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 579 (718)
Q Consensus 500 all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~ 579 (718)
+++.++++++++++.+.++...+.+.+. | +... +..+- .| -+| .+..|++++..|++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~~---~~~lC-------HG--~~G---~~~~lL~~~~~~~~- 288 (343)
T cd04794 232 LLAKAYLVFKEEQYLEAAIKCGELIWKR------G-LLKK---GPGLC-------HG--IAG---NAYAFLLLYRLTGD- 288 (343)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh------C-CccC---CCccc-------cC--ccc---hHHHHHHHHHHhCc-
Confidence 8999999999999999999888765421 1 1000 00000 01 133 35789999999986
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 005023 580 KSDYYRQNAEHSLAVFETRLK 600 (718)
Q Consensus 580 ~~~~y~e~a~~~l~~~~~~i~ 600 (718)
++|.++|..+.........
T Consensus 289 --~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 289 --LKYLYRACKFAEFLINYGF 307 (343)
T ss_pred --HHHHHHHHHHHHHHhcchh
Confidence 7899999888777655543
No 115
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=96.40 E-value=2.8 Score=49.91 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=39.2
Q ss_pred CCcEEEEecCCCCCC-CCCcchHHHHHHHHHHHHHHHHccCChHH----HHHHHHHHHHHHHhc
Q 005023 230 GGGFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFY----SYICRDILDYLRRDM 288 (718)
Q Consensus 230 ~GGF~RYsvD~~W~v-PHFEKmLyDnA~ll~~ya~Ay~~t~~~~y----~~~A~~~~~~l~~~m 288 (718)
|+..++|.+|..... +| ..-+-..|..|++....++.++|..+ ...++.+++|+.+..
T Consensus 331 G~~~~~~~~dG~~~~~~~-~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~ 393 (616)
T TIGR01577 331 GSWQQRYYLNGRLAPLQW-GLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFI 393 (616)
T ss_pred CCcceEEecCCCCCCCCC-CccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 334667778865432 22 34444478888888888899998644 456789999998843
No 116
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.26 E-value=0.0081 Score=67.79 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=54.5
Q ss_pred hhHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc---ccEEEEecCCCCcchHHHHHHHHHHhcCCCCC
Q 005023 3 RRSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 76 (718)
Q Consensus 3 ~~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~---~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~Gw 76 (718)
.+.+..+.++++++++ .+||+.|+.|..+- .++++.++. ++..++||.++.+++.+. .|+.|+
T Consensus 8 ~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~~ 76 (462)
T TIGR01130 8 KDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATEEKDLAQK--------YGVSGY 76 (462)
T ss_pred HHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCCcHHHHHh--------CCCccc
Confidence 3456777788898765 38999999998653 446666653 378889999998766544 578899
Q ss_pred CcEEEeCCCCce
Q 005023 77 PLSVFLSPDLKP 88 (718)
Q Consensus 77 P~~vfl~p~g~p 88 (718)
|+.+++. +|+.
T Consensus 77 Pt~~~~~-~g~~ 87 (462)
T TIGR01130 77 PTLKIFR-NGED 87 (462)
T ss_pred cEEEEEe-CCcc
Confidence 9887775 5554
No 117
>PTZ00102 disulphide isomerase; Provisional
Probab=96.23 E-value=0.0077 Score=68.65 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=53.5
Q ss_pred hHHhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhh---cccEEEEecCCCCcchHHHHHHHHHHhcCCCCCC
Q 005023 4 RSFCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 77 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln---~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP 77 (718)
..+..+.++++++++ .+||+.|+.|..+-. ++++.++ .+++..+||.++.+++.+. +|+.|+|
T Consensus 40 ~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~~~~~l~~~--------~~i~~~P 108 (477)
T PTZ00102 40 STFDKFITENEIVLVKFYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDATEEMELAQE--------FGVRGYP 108 (477)
T ss_pred hhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECCCCHHHHHh--------cCCCccc
Confidence 345667778888765 389999999987632 3555554 3488889999998776554 5788999
Q ss_pred cEEEeCCCC
Q 005023 78 LSVFLSPDL 86 (718)
Q Consensus 78 ~~vfl~p~g 86 (718)
+.+|+...+
T Consensus 109 t~~~~~~g~ 117 (477)
T PTZ00102 109 TIKFFNKGN 117 (477)
T ss_pred EEEEEECCc
Confidence 999998654
No 118
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.21 E-value=0.012 Score=56.71 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=47.4
Q ss_pred hhcCCcEEEE---cCCchhhhhhccccCcHHHHHH---hhc--------ccEEEEecCCCCcc-hHHHH-----------
Q 005023 10 TKTRRTHFLI---NTCHWCHVMEVESFEDEGVAKL---LND--------WFVSIKVDREERPD-VDKVY----------- 63 (718)
Q Consensus 10 k~e~K~ii~y---~~C~wChvM~~esf~d~~va~~---ln~--------~Fv~vkvD~ee~pd-~d~~y----------- 63 (718)
.=.+|+++++ +||+.|+..- |.+.++ +++ .|..|-|+.++.+. +.+.+
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~------P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFA------PKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHH------HHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 3358898775 7788887733 444443 332 47777777665432 11111
Q ss_pred -----HHHHHHhcCCCCCCcEEEeCCCCceeec
Q 005023 64 -----MTYVQALYGGGGWPLSVFLSPDLKPLMG 91 (718)
Q Consensus 64 -----~~~~q~~~g~~GwP~~vfl~p~g~p~~~ 91 (718)
...+...+|..|.|++++++|+|+++..
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 1122334688999999999999999953
No 119
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.16 E-value=1.3 Score=47.45 Aligned_cols=133 Identities=12% Similarity=-0.010 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe--ecCCCCCCCCCcccHHHHH
Q 005023 421 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPGFLDDYAFLI 498 (718)
Q Consensus 421 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~--~~~g~~~~~~~l~DyA~li 498 (718)
++.+|+.+++.+.+ +.+.+.++.+..++.+...+ . +..++. ..++.....++...-+=.+
T Consensus 164 i~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~wChG~~Gi~ 225 (343)
T cd04434 164 ILLALLLLYKKTVD----------------KSLEALIKALLKYERRLQDD-S-GGFWWPSRSNGGNRFLVAWCHGAPGIL 225 (343)
T ss_pred HHHHHHHHHHhcCC----------------hhHHHHHHHHHHHHHHccCC-C-CCCCCCCCCCCCccccceecCCChhHH
Confidence 57788899988854 56777777777766555433 2 222221 1111222345555556788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005023 499 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 578 (718)
Q Consensus 499 ~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~ 578 (718)
.+++.+++.++++.+.+.+.+..+.+.+..... ..+...=.|.+=.+..|++++..+++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~lChG~~G~~~~ll~l~~~~~~ 284 (343)
T cd04434 226 LALLLAYKALGDDKYDEAAEKALELAWKRGLLE---------------------LKNPGLCHGIAGNLLILLLLYKLTGD 284 (343)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc---------------------CCCCCcCcCccchHHHHHHHHHHhCC
Confidence 999999999999999999999888776654210 00112233445566788899999986
Q ss_pred CCchHHHHHHHHHHHHH
Q 005023 579 SKSDYYRQNAEHSLAVF 595 (718)
Q Consensus 579 ~~~~~y~e~a~~~l~~~ 595 (718)
+.+++.++.+....
T Consensus 285 ---~~~~~~a~~~~~~~ 298 (343)
T cd04434 285 ---LKFLARALALALLL 298 (343)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 78888887766543
No 120
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.16 E-value=0.03 Score=64.65 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=69.3
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCC-CCCccccccccCCCCCCCChHHHHHHHHH
Q 005023 492 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG-EDPSVLLRVKEDHDGAEPSGNSVSVINLV 570 (718)
Q Consensus 492 ~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~-~~~~l~~r~k~~~D~a~PS~ns~~a~~Ll 570 (718)
|-..=.+-|||.+|..|+|+.||++|++|.+.+..-| |..+|--+..-. .......... ....+..+.-+.+...+.
T Consensus 155 EttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AF-dTptgiP~~~vnl~~g~~~~~~~-~~~~~~lAe~gSl~LEF~ 232 (522)
T PTZ00470 155 ETTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAF-NEDTGFPASEINLATGRKSYPGW-AGGCSILSEVGTLQLEFN 232 (522)
T ss_pred eeehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccCCCCCccc-CCCccchhhhhhHHHHHH
Confidence 4445568999999999999999999999999999888 555553222111 0000000000 012234445556677899
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005023 571 RLASIVAGSKSDYYRQNAEHSLAVFET 597 (718)
Q Consensus 571 rL~~lt~~~~~~~y~e~a~~~l~~~~~ 597 (718)
+|+++||+ +.|.+.|+++...+..
T Consensus 233 ~LS~lTGd---~kY~~~a~~i~~~l~~ 256 (522)
T PTZ00470 233 YLSEITGD---PKYAEYVDKVMDALFS 256 (522)
T ss_pred HHHHhhCC---HHHHHHHHHHHHHHHh
Confidence 99999996 8999999999988754
No 121
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.13 E-value=5.3 Score=49.16 Aligned_cols=136 Identities=14% Similarity=0.083 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHH
Q 005023 421 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 500 (718)
Q Consensus 421 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~a 500 (718)
++++|+.+++++++ ++|++.|.++.++....+.....++. ..++.....++....+=.+.+
T Consensus 648 i~~aL~~l~~~~~d----------------~~~~~~a~~~l~~~~~~~~~~~~~w~---~~~~~~~~~~WChG~~GI~la 708 (825)
T cd04792 648 IAWALLRLYKVTGD----------------SRYLKLAHKALKYERRLFSEEGWNWP---RKDGNSFSAAWCHGAPGILLA 708 (825)
T ss_pred HHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHhcCHhhcCCC---CcCcCCCCCcccCCcHHHHHH
Confidence 57899999999987 78999999999987665432111111 111111234566666778899
Q ss_pred HHHHHHH--cCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005023 501 LLDLYEF--GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 578 (718)
Q Consensus 501 ll~LYea--Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~ 578 (718)
++.++++ ..++.+.+.+.++.+.+..... .. +. ..--|++=.+..|+.+++.+++
T Consensus 709 l~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~--------~~---~~------------slCHG~~Gil~~ll~~~~~~~~ 765 (825)
T cd04792 709 RLELLKFNDLDDEELKEEIEIALKTTLKEGF--------GN---NH------------SLCHGDLGNLEILLYAAKAFGD 765 (825)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHhcC--------CC---CC------------eecCCCcchHHHHHHHHHhcCC
Confidence 9999999 6788888888887776654321 00 00 1112333345678888999885
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 005023 579 SKSDYYRQNAEHSLAVFETRLKD 601 (718)
Q Consensus 579 ~~~~~y~e~a~~~l~~~~~~i~~ 601 (718)
++|.+.++.+...+.....+
T Consensus 766 ---~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 766 ---EKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred ---HHHHHHHHHHHHHHHHHHHh
Confidence 78899888877766555543
No 122
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.11 E-value=0.0097 Score=50.66 Aligned_cols=61 Identities=20% Similarity=0.179 Sum_probs=41.3
Q ss_pred EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceeecccccCC
Q 005023 19 INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPP 97 (718)
Q Consensus 19 y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~~~~y~p~ 97 (718)
.+||++|+.|.. . =.++++-++-.+..++|| +.+.. + -+|..|.|+.++ ||+.++.| ..|.
T Consensus 7 a~~C~~C~~~~~-~--~~~~~~e~~~~~~~~~v~-----~~~~a-~-----~~~v~~vPti~i---~G~~~~~G-~~~~ 67 (76)
T TIGR00412 7 GTGCANCQMTEK-N--VKKAVEELGIDAEFEKVT-----DMNEI-L-----EAGVTATPGVAV---DGELVIMG-KIPS 67 (76)
T ss_pred CCCCcCHHHHHH-H--HHHHHHHcCCCeEEEEeC-----CHHHH-H-----HcCCCcCCEEEE---CCEEEEEe-ccCC
Confidence 499999999975 1 245666666667777887 22321 1 168899998888 99888443 3453
No 123
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.10 E-value=0.015 Score=53.10 Aligned_cols=64 Identities=9% Similarity=0.046 Sum_probs=44.5
Q ss_pred CcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 14 RTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 14 K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
+++++ .+||+.|+.|.. .| .++++... +..-++||.++. ++.+. +++.+.|+.+|+. +|+++.
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~-~l--~~la~~~~-~v~f~~vd~~~~-~l~~~--------~~i~~~Pt~~~f~-~G~~v~ 90 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDS-HL--EELAAKYP-ETKFVKINAEKA-FLVNY--------LDIKVLPTLLVYK-NGELID 90 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHH-HH--HHHHHHCC-CcEEEEEEchhh-HHHHh--------cCCCcCCEEEEEE-CCEEEE
Confidence 77765 389999999984 44 24555543 344578998876 44433 5788999887775 799885
Q ss_pred c
Q 005023 91 G 91 (718)
Q Consensus 91 ~ 91 (718)
.
T Consensus 91 ~ 91 (113)
T cd02957 91 N 91 (113)
T ss_pred E
Confidence 3
No 124
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.04 E-value=0.026 Score=56.54 Aligned_cols=84 Identities=5% Similarity=-0.017 Sum_probs=58.9
Q ss_pred hhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEE------EEecCCCCcchHHHHHH--------------
Q 005023 9 GTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVS------IKVDREERPDVDKVYMT-------------- 65 (718)
Q Consensus 9 Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~------vkvD~ee~pd~d~~y~~-------------- 65 (718)
+.=.+|..++ .+||..|+. +.|-+.++=.++|-. +-||.++.+.....+.+
T Consensus 55 ~~l~GKV~lvn~~Aswc~~c~~------e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~ 128 (184)
T TIGR01626 55 AELAGKVRVVHHIAGRTSAKEX------NASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQ 128 (184)
T ss_pred HHcCCCEEEEEEEecCCChhhc------cchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcce
Confidence 3344787755 589999987 678888887778888 88888876544333311
Q ss_pred -------HHHHhcCCCCCCcE-EEeCCCCceeec-ccccCCC
Q 005023 66 -------YVQALYGGGGWPLS-VFLSPDLKPLMG-GTYFPPE 98 (718)
Q Consensus 66 -------~~q~~~g~~GwP~~-vfl~p~g~p~~~-~~y~p~~ 98 (718)
.++..+|..|.|.+ +|+|++|+..+. .|+++++
T Consensus 129 vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~e 170 (184)
T TIGR01626 129 VVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDS 170 (184)
T ss_pred EEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHH
Confidence 23445788899999 799999998864 3555543
No 125
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.01 E-value=0.02 Score=60.98 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=41.6
Q ss_pred cCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCc---chHHHHHHHHHHhcCCCCCCcEEEeCCC
Q 005023 12 TRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP---DVDKVYMTYVQALYGGGGWPLSVFLSPD 85 (718)
Q Consensus 12 e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~p---d~d~~y~~~~q~~~g~~GwP~~vfl~p~ 85 (718)
.+|++++ .+||..|+.|... + .++++..+-.++.|.+|....| .++.- ...++ -.|+.+.|+++|++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~-L--~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d-~~la~-~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPI-L--QAFEDRYGIEVLPVSVDGGPLPGFPNARPD-AGQAQ-QLKIRTVPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHH-H--HHHHHHcCcEEEEEeCCCCccccCCcccCC-HHHHH-HcCCCcCCeEEEEECC
Confidence 3667655 3899999997731 1 2233333323666666654432 21100 01111 2688999999999996
Q ss_pred Ccee
Q 005023 86 LKPL 89 (718)
Q Consensus 86 g~p~ 89 (718)
|+.+
T Consensus 240 ~~~v 243 (271)
T TIGR02740 240 PNQF 243 (271)
T ss_pred CCEE
Confidence 5444
No 126
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.98 E-value=0.014 Score=59.70 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=44.5
Q ss_pred hcCCcE----EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCC
Q 005023 11 KTRRTH----FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 86 (718)
Q Consensus 11 ~e~K~i----i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g 86 (718)
+..+|+ |..+||++|..|.. .+ .+++.. |.....++||.++.|++.+. +|+.+.|+.+|.. +|
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~~~-~l--~~l~~~-~~~i~~~~vD~~~~~~~~~~--------~~V~~vPtl~i~~-~~ 196 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYAVL-MA--HKFALA-NDKILGEMIEANENPDLAEK--------YGVMSVPKIVINK-GV 196 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHHHH-HH--HHHHHh-cCceEEEEEeCCCCHHHHHH--------hCCccCCEEEEec-CC
Confidence 345565 23489999999883 22 223322 44455578999998887765 6788999999864 56
Q ss_pred cee
Q 005023 87 KPL 89 (718)
Q Consensus 87 ~p~ 89 (718)
+.+
T Consensus 197 ~~~ 199 (215)
T TIGR02187 197 EEF 199 (215)
T ss_pred EEE
Confidence 543
No 127
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=95.92 E-value=3 Score=47.40 Aligned_cols=129 Identities=17% Similarity=0.207 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCC-----------------CCCcccHHHHHHHHHHHHHHcCChHH
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------------PGFLDDYAFLISGLLDLYEFGSGTKW 513 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~-----------------~~~l~DyA~li~all~LYeaTgd~~~ 513 (718)
++.++.+......-.+..||++++.|.=.+.+|+... .++.-+ .....+++..|.++.|+.-
T Consensus 327 ~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~-~~yll~~vra~~~s~D~~L 405 (557)
T PF06917_consen 327 KEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPAD-PDYLLPYVRAYRLSRDPEL 405 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE---HHHHHHHHHHHHHS--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCc-hhHhHHHHHHHHcCCCHHH
Confidence 7889999988888888899999898888888875311 011111 3446899999999999998
Q ss_pred HHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005023 514 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 593 (718)
Q Consensus 514 L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~ 593 (718)
...+..+++ +|- -|-+-........+ +....+....++.+++.|++.|+. +.|++.|+++-.
T Consensus 406 w~~~~~m~~----~~g---LGdig~~~~~~~~~--------~~~~~~~sp~~L~allEL~~atq~---~~~l~lA~~~g~ 467 (557)
T PF06917_consen 406 WDLARTMAH----HFG---LGDIGNAAGKEPRV--------NMQTDNASPYLLFALLELYQATQD---ARYLELADQVGE 467 (557)
T ss_dssp HHHHHHHHH----HTT----EE-TTBTTBS-EE---------TT-----HHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHh----hcC---cccccCcccccccc--------ccCCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 888877774 341 12121111111111 223344555788899999999986 899999988766
Q ss_pred HHHHH
Q 005023 594 VFETR 598 (718)
Q Consensus 594 ~~~~~ 598 (718)
.+..+
T Consensus 468 ~l~~~ 472 (557)
T PF06917_consen 468 NLFEQ 472 (557)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 128
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.86 E-value=0.015 Score=59.44 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=43.5
Q ss_pred cCCchhhhhhccccCcHHHHHHhhc-ccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 20 NTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 20 ~~C~wChvM~~esf~d~~va~~ln~-~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
+||.+|+.|.. .+ +++++...+ .+..|+||.++.|++.+. +|+.+.|+.+|+. +|+..
T Consensus 32 ~wC~~C~~~~p-~l--~~la~~~~~~~i~~v~vd~~~~~~l~~~--------~~V~~~Pt~~~f~-~g~~~ 90 (215)
T TIGR02187 32 EGCQYCKETEQ-LL--EELSEVSPKLKLEIYDFDTPEDKEEAEK--------YGVERVPTTIILE-EGKDG 90 (215)
T ss_pred CCCCchHHHHH-HH--HHHHhhCCCceEEEEecCCcccHHHHHH--------cCCCccCEEEEEe-CCeee
Confidence 79999999985 33 345555543 266788898898888776 6788999999987 56654
No 129
>PLN02309 5'-adenylylsulfate reductase
Probab=95.84 E-value=0.025 Score=64.33 Aligned_cols=68 Identities=15% Similarity=0.324 Sum_probs=48.8
Q ss_pred hhhcCCcEEE--E-cCCchhhhhhccccCcHHHHHHhh-cccEEEEecCC-CCcchHHHHHHHHHHhcCCCCCCcEEEeC
Q 005023 9 GTKTRRTHFL--I-NTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLS 83 (718)
Q Consensus 9 Ak~e~K~ii~--y-~~C~wChvM~~esf~d~~va~~ln-~~Fv~vkvD~e-e~pd~d~~y~~~~q~~~g~~GwP~~vfl~ 83 (718)
.++++|++|+ | +||+.|+.|+.. |+ ++++.++ .++..++||.+ +..++ ++...++.++||.+|+.
T Consensus 361 ~~~~~k~vlV~FyApWC~~Cq~m~p~-~e--~LA~~~~~~~V~f~kVD~d~~~~~l-------a~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 361 LENRKEPWLVVLYAPWCPFCQAMEAS-YE--ELAEKLAGSGVKVAKFRADGDQKEF-------AKQELQLGSFPTILLFP 430 (457)
T ss_pred hhcCCCeEEEEEECCCChHHHHHHHH-HH--HHHHHhccCCeEEEEEECCCcchHH-------HHhhCCCceeeEEEEEe
Confidence 3467888766 3 899999999864 55 6777775 45888999998 43332 22225788999999996
Q ss_pred CCC
Q 005023 84 PDL 86 (718)
Q Consensus 84 p~g 86 (718)
+..
T Consensus 431 ~g~ 433 (457)
T PLN02309 431 KNS 433 (457)
T ss_pred CCC
Confidence 543
No 130
>PLN02175 endoglucanase
Probab=95.75 E-value=0.24 Score=56.67 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCC-CCC---CCCCcccH
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSK---APGFLDDY 494 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g-~~~---~~~~l~Dy 494 (718)
+-+.+|||.|++++++- ...| ..++|+.|+++++|..++- |.+..+...+ .+. ..++.
T Consensus 172 ae~AAALAaaS~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~-----g~y~~~~~~~~~~~Y~s~s~y~--- 233 (484)
T PLN02175 172 AETAAALAAASMVFRKV--DSKY--------SRLLLATAKKVMQFAIQYR-----GAYSDSLSSSVCPFYCSYSGYK--- 233 (484)
T ss_pred HHHHHHHHHHHHHhccc--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCcccCccccccCccccCCCcc---
Confidence 78899999999999861 0111 1467999999999998742 2211110000 010 11233
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHH
Q 005023 495 AFLISGLLDLYEFGSGTKWLVWAIE 519 (718)
Q Consensus 495 A~li~all~LYeaTgd~~~L~~A~~ 519 (718)
=.+++|.+.||.+|||..|++.+..
T Consensus 234 DEl~WAAawLY~ATgd~~Yl~~~~~ 258 (484)
T PLN02175 234 DELMWGASWLLRATNDPYYANFIKS 258 (484)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3568999999999999999976644
No 131
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=95.75 E-value=0.032 Score=55.74 Aligned_cols=65 Identities=14% Similarity=0.271 Sum_probs=38.6
Q ss_pred EcCCchhhhhhccccCcHHHHHHhhc-ccEEEEecCCCCcch--HHHH---HHHHHHhcCC--CCCCcEEEeCCCCcee
Q 005023 19 INTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDV--DKVY---MTYVQALYGG--GGWPLSVFLSPDLKPL 89 (718)
Q Consensus 19 y~~C~wChvM~~esf~d~~va~~ln~-~Fv~vkvD~ee~pd~--d~~y---~~~~q~~~g~--~GwP~~vfl~p~g~p~ 89 (718)
.+||++|+.. .|.+.++-++ .|..|-|+.++.+++ ...+ ....+..+|. .++|++++++++|+..
T Consensus 78 aswCp~C~~e------~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 78 QGHCPYCHQF------DPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred CCCCHhHHHH------HHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 4889999884 3556655554 355555555554211 1111 1112223553 6999999999999985
No 132
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.70 E-value=0.024 Score=55.21 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=50.8
Q ss_pred hhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhh-cccEEEEecCCCCcchHHHHH--------------HHHH
Q 005023 7 CGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM--------------TYVQ 68 (718)
Q Consensus 7 ~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln-~~Fv~vkvD~ee~pd~d~~y~--------------~~~q 68 (718)
..+.-++|++++ .+||+.|+... ..|. ++.+.++ +.+..|-|+.++.++.-..|+ ..+.
T Consensus 55 ~l~~~~~k~~~l~f~a~~C~~C~~~~-~~l~--~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 131 (173)
T PRK03147 55 ELKDLKGKGVFLNFWGTWCKPCEKEM-PYMN--ELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVI 131 (173)
T ss_pred eHHHcCCCEEEEEEECCcCHHHHHHH-HHHH--HHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHH
Confidence 344446787765 47899897643 2222 2233333 223334444333221111000 1112
Q ss_pred HhcCCCCCCcEEEeCCCCceeec-ccccCCCCCCCcccHHHHHHHH
Q 005023 69 ALYGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKV 113 (718)
Q Consensus 69 ~~~g~~GwP~~vfl~p~g~p~~~-~~y~p~~~~~~~~~f~~~L~~i 113 (718)
..+|..++|++++++++|+++.. .+..+.+ .+.+.|+++
T Consensus 132 ~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~------~l~~~l~~~ 171 (173)
T PRK03147 132 DAYGVGPLPTTFLIDKDGKVVKVITGEMTEE------QLEEYLEKI 171 (173)
T ss_pred HHcCCCCcCeEEEECCCCcEEEEEeCCCCHH------HHHHHHHHh
Confidence 23788999999999999999853 2333332 355555544
No 133
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.69 E-value=0.017 Score=51.19 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=49.9
Q ss_pred CCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCC--CCCcEEEeCCC-C
Q 005023 13 RRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG--GWPLSVFLSPD-L 86 (718)
Q Consensus 13 ~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~--GwP~~vfl~p~-g 86 (718)
++|++. ..||..|+.|.. .| .+||+.++..+.-++||.++.|++.+. .|.. ++|+.+++... |
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~-~~--~~vA~~~~~~v~f~~vd~~~~~~~~~~--------~~i~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRE-RF--KEVAKKFKGKLLFVVVDADDFGRHLEY--------FGLKEEDLPVIAIINLSDG 80 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHH-HH--HHHHHHhCCeEEEEEEchHhhHHHHHH--------cCCChhhCCEEEEEecccc
Confidence 566654 379999999885 33 478888888899999999998776554 5666 99999999884 4
Q ss_pred ce
Q 005023 87 KP 88 (718)
Q Consensus 87 ~p 88 (718)
+.
T Consensus 81 ~k 82 (103)
T cd02982 81 KK 82 (103)
T ss_pred cc
Confidence 43
No 134
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=95.67 E-value=0.058 Score=51.38 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=60.6
Q ss_pred hhHHhhh----hhcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchH--------HHHHHHH
Q 005023 3 RRSFCGG----TKTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD--------KVYMTYV 67 (718)
Q Consensus 3 ~~a~~~A----k~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d--------~~y~~~~ 67 (718)
++|++.| |+|.|++++| +--.-|.+--++++.+++|.+++|.|||.---|....-..+ ..-+.+.
T Consensus 7 ~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~ 86 (136)
T cd02990 7 EAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAA 86 (136)
T ss_pred HHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHH
Confidence 6899999 9999999987 22223444445788999999999999999988876532111 1112244
Q ss_pred HHhc--CCCCCCcEEEeCCCCcee
Q 005023 68 QALY--GGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 68 q~~~--g~~GwP~~vfl~p~g~p~ 89 (718)
|++. +..-+|...++.+..+-+
T Consensus 87 ~~~~~~~~~~fP~~avI~~~~~~~ 110 (136)
T cd02990 87 QTIRNIKTDQLPAILIIMGKRSSN 110 (136)
T ss_pred HHHHhcCcCCCCeEEEEEecCCce
Confidence 5554 357899999998776533
No 135
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=95.62 E-value=1 Score=54.19 Aligned_cols=222 Identities=20% Similarity=0.215 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEec----C-CCCCCCCCcchHHH-HHHHHHHHHHHHHccCChHHHHHHHHH
Q 005023 207 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV----D-ERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDI 280 (718)
Q Consensus 207 ~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsv----D-~~W~vPHFEKmLyD-nA~ll~~ya~Ay~~t~~~~y~~~A~~~ 280 (718)
+-...+|..--+.|...+|.-...+-..+..+ + ..|.+--.---||| -|-++..|+-..++||...|+++|.++
T Consensus 596 e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~ 675 (963)
T COG4403 596 EYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKA 675 (963)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44566666666667766676665554444322 3 67876555667888 777888888889999999999999999
Q ss_pred HHHHHHhccCCC-----CceeeeccCCcccccCcccccCCceEe-echHHHHHHhchhHHHHHHHhcccCCCCcCCCCCC
Q 005023 281 LDYLRRDMIGPG-----GEIFSAEDADSAETEGATRKKEGAFYV-WTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMS 354 (718)
Q Consensus 281 ~~~l~~~m~~p~-----Ggf~sa~DADs~~~~~~~~~~EG~yY~-Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~ 354 (718)
+.=+.+.+.... |||. |--|-||. |+- .++.
T Consensus 676 L~~~~~sv~~~~~~~~iga~~---------------G~~g~~yal~~I---~~~~------------------------- 712 (963)
T COG4403 676 LQDSRKSVNNNLNPINIGAFT---------------GLSGYFYALWKI---YSVT------------------------- 712 (963)
T ss_pred HHHHHHhhhhccCCccccccc---------------ccchhhhhhHHH---HHhc-------------------------
Confidence 988888765421 3331 23344552 221 1111
Q ss_pred CCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHH--HHHHHHHHHHHh
Q 005023 355 DPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL--VISSFARASKIL 432 (718)
Q Consensus 355 dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl--~I~ALa~A~~~~ 432 (718)
+.|.|. .+..+.+. ....+.++ .. |.-+ -||+ +|..|...|+.+
T Consensus 713 -------~~~~l~----------------~~~~~~i~-~le~~v~~--~~-----~~d~---i~Gl~g~i~~L~~iYk~~ 758 (963)
T COG4403 713 -------RDNYLI----------------QSAENSIR-HLEILVQK--SK-----DPDF---INGLAGVICVLVSIYKLT 758 (963)
T ss_pred -------ccHHHH----------------HHHHHHHH-HHHHHHhh--cc-----Ccch---hhccHHHHHHHHHHHhhc
Confidence 111110 01111111 11122211 11 1112 2455 577888889887
Q ss_pred hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChH
Q 005023 433 KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTK 512 (718)
Q Consensus 433 ~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~ 512 (718)
.+ |+.++.|..+.+.+.+.....++ .+....++...-+-.|.+|+.||++|+++.
T Consensus 759 ~e----------------pk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gfshg~sgi~~tL~~ly~~T~e~~ 813 (963)
T COG4403 759 DE----------------PKFLELAISLGRILMEKIVGNDS---------SETVLLGFSHGASGIILTLLKLYEATGEES 813 (963)
T ss_pred cc----------------hHHHHHHHHHHHHHHHHhhcccc---------ccceecccccchHHHHHHHHHHHHhcCcHH
Confidence 66 89999999999999876543221 111234777778889999999999999999
Q ss_pred HHHHHHHHHHHHHHhccc
Q 005023 513 WLVWAIELQNTQDELFLD 530 (718)
Q Consensus 513 ~L~~A~~L~~~~~~~F~D 530 (718)
+++.+.++..+-..+|-+
T Consensus 814 l~~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 814 LLKKIKELLSYERMKFSD 831 (963)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999888777765
No 136
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.61 E-value=0.0046 Score=58.43 Aligned_cols=63 Identities=25% Similarity=0.359 Sum_probs=38.7
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcc-cEEEE-ecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDW-FVSIK-VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~-Fv~vk-vD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
|.-+||+.|.. .=|-+.++...+ =|.|+ +.|++++++-.-|.+ .|....|+.||++.+|+++.
T Consensus 48 i~e~WCgD~~~------~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-----~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 48 ITETWCGDCAR------NVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-----NGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp E--TT-HHHHH------HHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT------SS--SSEEEEE-TT--EEE
T ss_pred EECCCchhHHH------HHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-----CCCeecCEEEEEcCCCCEeE
Confidence 55799999998 457777777766 66776 467777765544432 56778999999999999984
No 137
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.60 E-value=0.81 Score=52.33 Aligned_cols=298 Identities=15% Similarity=0.076 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEE-EEecCCCCC--CCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005023 207 SEGQKMVLFTLQCMAKGGIHDHVGGGFH-RYSVDERWH--VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 283 (718)
Q Consensus 207 ~~~~~~~~~TL~~m~~gGi~D~v~GGF~-RYsvD~~W~--vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~ 283 (718)
+..++.|..--+++.. .+|.-.|=.+ ++....... .|..+-.|-+-+-++.-+....++|||+.|.+.|+++.+.
T Consensus 98 ~~lL~kA~~lad~Ll~--aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~ 175 (452)
T PF01532_consen 98 PILLSKAVELADRLLP--AFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDA 175 (452)
T ss_dssp HHHHHHHHHHHHHHGG--GGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--hccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhhccHHHHHHHHHHHH
Confidence 4556666666666665 5666555444 233322111 1222346777777888889999999999999999999999
Q ss_pred HHH--hccCCCCceeeeccCCcccccCcccccCCceEeechHHHHHHhchh-HHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 005023 284 LRR--DMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH-AILFKEHYYLKPTGNCDLSRMSDPHNEF 360 (718)
Q Consensus 284 l~~--~m~~p~Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~-~~~~~~~~~v~~~Gn~~~~~~~dp~~~~ 360 (718)
|.+ .-....|-|-...|+++. .-.+..+.|. ..++. .+.+.+.|=+...
T Consensus 176 l~~~~~~~~~~gL~p~~id~~~g-------~~~~~~~~~G------a~~DS~YEYLlK~~lL~g~--------------- 227 (452)
T PF01532_consen 176 LWRSQNRSKIPGLFPNFIDPSTG-------KWTSSSISLG------AGGDSFYEYLLKMYLLLGG--------------- 227 (452)
T ss_dssp HHCCCCCHSBTTB-BSEEETTTS--------BSSTEE-SS------TTTHHHHHHHHHHHHHTTT---------------
T ss_pred HHHhhhccCCcccCcceecCCcC-------cccccccccC------CCcchHHHhhhhhhhhcCc---------------
Confidence 988 322344555456777652 1123333333 11121 2333333333210
Q ss_pred CCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhch---------------HHHHHHHH
Q 005023 361 KGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSW---------------NGLVISSF 425 (718)
Q Consensus 361 eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~W---------------Ngl~I~AL 425 (718)
..+.+. +-..+.++.+++.|+.....+. ..+--.+..+ .|+.-.-|
T Consensus 228 ----------~d~~~~-------~~~~~a~~~i~~~Ll~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l 288 (452)
T PF01532_consen 228 ----------TDEQYR-------DMYDEAVDAIKKHLLFRPSTPG--DYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGML 288 (452)
T ss_dssp ----------TTHHHH-------HHHHHHHHHHHHHTEEEBTTTT----T-EEE-EEETTTTTEEESEEECGGGGHHHHH
T ss_pred ----------cchHHH-------HHHHHHHHHHHHHhhccCCCCC--ccceeEeeeeecccCccccccccchhhcchhHH
Confidence 001111 1223344444555443211111 0111111122 22333344
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe--ecCC---------C-CCC-CCCcc
Q 005023 426 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNG---------P-SKA-PGFLD 492 (718)
Q Consensus 426 a~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~--~~~g---------~-~~~-~~~l~ 492 (718)
+-+++.+++ +.+++.|.++.+..........+|..-.. +... . ... .....
T Consensus 289 ~Lg~~~~~~----------------~~~~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (452)
T PF01532_consen 289 ALGAKLFND----------------EGDLELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDP 352 (452)
T ss_dssp HHHHHTTTC----------------HHHHHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG-
T ss_pred HHhhcccCc----------------hhHHHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccc
Confidence 555555544 78999999999887654433223533322 1110 0 000 00111
Q ss_pred cH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHH
Q 005023 493 DY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 569 (718)
Q Consensus 493 Dy---A~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~L 569 (718)
.| -.+|+.+.-+|++|||+.|+++|.++++.+..+..- ..||-.-.+-... ....++..|| ...++-|
T Consensus 353 ~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~~r~--~~G~a~i~dv~~~-----~~~~~D~meS--f~laETl 423 (452)
T PF01532_consen 353 RYLLRPETIESLFYLYRATGDPKYREWGWDIFQAIEKYCRT--ECGYAGIKDVTSD-----PPQKDDRMES--FFLAETL 423 (452)
T ss_dssp -B-S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHTEE--TTEE--BSETTSS-----SSCBBS-B-C--HHHHTHH
T ss_pred cccchhhhhhheeEEEEEcCCchHHHHHHHHHHHHHHhccc--ceehhhhcccCcC-----CcccCCCccc--eehHhhh
Confidence 22 378999999999999999999999999999998843 3456543221100 1122334555 4567777
Q ss_pred HHHHHHhCC
Q 005023 570 VRLASIVAG 578 (718)
Q Consensus 570 lrL~~lt~~ 578 (718)
--|+.+..+
T Consensus 424 KYlYLlFsd 432 (452)
T PF01532_consen 424 KYLYLLFSD 432 (452)
T ss_dssp HHHHHHTSS
T ss_pred HHHHhhcCC
Confidence 778877765
No 138
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.56 E-value=0.02 Score=44.00 Aligned_cols=60 Identities=30% Similarity=0.506 Sum_probs=44.7
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCC
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 85 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~ 85 (718)
+..+||.+|+.+... +.+- +..+.++..+.+|.++.++.... ..-.+..+.|+.+|.+++
T Consensus 4 ~~~~~c~~c~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 4 FYAPWCPFCQALRPV-LAEL---ALLNKGVKFEAVDVDEDPALEKE-----LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred EECCCChhHHhhhhH-HHHH---HhhCCCcEEEEEEcCCChHHhhH-----HHhCCCccccEEEEEeCC
Confidence 456899999998753 3322 56788899999999998776553 112567899999999877
No 139
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.029 Score=51.01 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=48.6
Q ss_pred HhhhhhcCCcEE-EEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCc-chHHHHHHHHHHhcCCCCCCcEEEeC
Q 005023 6 FCGGTKTRRTHF-LINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-DVDKVYMTYVQALYGGGGWPLSVFLS 83 (718)
Q Consensus 6 ~~~Ak~e~K~ii-~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~p-d~d~~y~~~~q~~~g~~GwP~~vfl~ 83 (718)
+..+-++|+-|| .-+||.+||. .++.|.+ ++-++..|.+|..+++ ++.+.+ .-++|+...|..+|
T Consensus 7 v~~~i~~~~VVifSKs~C~~c~~-~k~ll~~------~~v~~~vvELD~~~~g~eiq~~l----~~~tg~~tvP~vFI-- 73 (104)
T KOG1752|consen 7 VRKMISENPVVIFSKSSCPYCHR-AKELLSD------LGVNPKVVELDEDEDGSEIQKAL----KKLTGQRTVPNVFI-- 73 (104)
T ss_pred HHHHhhcCCEEEEECCcCchHHH-HHHHHHh------CCCCCEEEEccCCCCcHHHHHHH----HHhcCCCCCCEEEE--
Confidence 455556666553 3599999999 5577776 7778999999998776 344443 34688888886544
Q ss_pred CCCcee
Q 005023 84 PDLKPL 89 (718)
Q Consensus 84 p~g~p~ 89 (718)
.|+-+
T Consensus 74 -~Gk~i 78 (104)
T KOG1752|consen 74 -GGKFI 78 (104)
T ss_pred -CCEEE
Confidence 35555
No 140
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=95.44 E-value=0.037 Score=63.00 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=45.2
Q ss_pred hhcCCcEEE--E-cCCchhhhhhccccCcHHHHHHhhcc-cEEEEecCCCCc--chHHHHHHHHHHhcCCCCCCcEEEeC
Q 005023 10 TKTRRTHFL--I-NTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERP--DVDKVYMTYVQALYGGGGWPLSVFLS 83 (718)
Q Consensus 10 k~e~K~ii~--y-~~C~wChvM~~esf~d~~va~~ln~~-Fv~vkvD~ee~p--d~d~~y~~~~q~~~g~~GwP~~vfl~ 83 (718)
++.+|++|+ | +||+.|+.|... | +++++.+... ...++||.+..+ ...+. +++.++|+.+|+.
T Consensus 368 ~~~~k~VLV~FyApWC~~Ck~m~P~-~--eelA~~~~~~~v~~~kVdvD~~~~~~~~~~--------~~I~~~PTii~Fk 436 (463)
T TIGR00424 368 EERKEAWLVVLYAPWCPFCQAMEAS-Y--LELAEKLAGSGVKVAKFRADGDQKEFAKQE--------LQLGSFPTILFFP 436 (463)
T ss_pred hcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCcEEEEEECCCCccHHHHHH--------cCCCccceEEEEE
Confidence 457888876 3 899999999864 5 6677777543 455566665432 11111 5778999999997
Q ss_pred CCC
Q 005023 84 PDL 86 (718)
Q Consensus 84 p~g 86 (718)
...
T Consensus 437 ~g~ 439 (463)
T TIGR00424 437 KHS 439 (463)
T ss_pred CCC
Confidence 653
No 141
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=95.44 E-value=0.038 Score=48.66 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=45.7
Q ss_pred HhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhh-cccEEEEecCCCC-cchHHHHHH--------------H
Q 005023 6 FCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVYMT--------------Y 66 (718)
Q Consensus 6 ~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln-~~Fv~vkvD~ee~-pd~d~~y~~--------------~ 66 (718)
+..++..+|+++. ..||..|+.+.. .+.+ +.+.+. .++..+.|+.+.. ++....+.+ .
T Consensus 12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~~-~l~~--~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (116)
T cd02966 12 VSLSDLKGKVVLVNFWASWCPPCRAEMP-ELEA--LAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGE 88 (116)
T ss_pred eehHHcCCCEEEEEeecccChhHHHHhH-HHHH--HHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcch
Confidence 4444445788755 489999987542 2222 222331 2344455555443 322222211 1
Q ss_pred HHHhcCCCCCCcEEEeCCCCceee
Q 005023 67 VQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 67 ~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
....+|..++|.+++++|+|+.+.
T Consensus 89 ~~~~~~~~~~P~~~l~d~~g~v~~ 112 (116)
T cd02966 89 LAKAYGVRGLPTTFLIDRDGRIRA 112 (116)
T ss_pred HHHhcCcCccceEEEECCCCcEEE
Confidence 223467779999999999999875
No 142
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.36 E-value=0.06 Score=53.53 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=43.5
Q ss_pred CcEEE--E-cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 14 RTHFL--I-NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 14 K~ii~--y-~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
++|++ | +||..|+.|.. .| ..+|+-.. +..-+|||.++. ++... +++.+.|+.+|+- +|+.+.
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~-~l--~~LA~~~~-~vkF~kVd~d~~-~l~~~--------f~v~~vPTlllyk-~G~~v~ 149 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNS-SL--LCLAAEYP-AVKFCKIRASAT-GASDE--------FDTDALPALLVYK-GGELIG 149 (175)
T ss_pred cEEEEEEECCCCchHHHHHH-HH--HHHHHHCC-CeEEEEEeccch-hhHHh--------CCCCCCCEEEEEE-CCEEEE
Confidence 37765 3 89999999985 23 23444332 466788888875 44443 5778999887776 799884
No 143
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=95.36 E-value=0.028 Score=61.13 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=142.1
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC---CCceeeeccCCcccccCcccccCCceEeechHHHH
Q 005023 251 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP---GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVE 326 (718)
Q Consensus 251 LyD-nA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p---~Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~ 326 (718)
||+ -|-++..|.++++.++++.|.+.+.+.++.+.+.+... ..|+|.. .-|-. |...
T Consensus 7 ly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~G--------------~~Gi~--~~l~--- 67 (355)
T PF05147_consen 7 LYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFSG--------------LAGIA--YALS--- 67 (355)
T ss_dssp TTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTTS--------------CHHHH--HHHH---
T ss_pred CCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccCC--------------hHHHH--HHHH---
Confidence 455 67788899999999999999999999999998876442 2222221 00110 1110
Q ss_pred HHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCC
Q 005023 327 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPR 406 (718)
Q Consensus 327 ~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~ 406 (718)
-+...++ ....+.+.++.+.+.+.+.......
T Consensus 68 --------------~~~~~~~----------------------------------~~~~~~~~l~~~~~~i~~~~~~~~~ 99 (355)
T PF05147_consen 68 --------------YLSKRLG----------------------------------DEKYIEELLKRILNIIENSISNDSN 99 (355)
T ss_dssp --------------HHCCCTC----------------------------------HHHHHHHHHHHHHHCHHHHHHCT--
T ss_pred --------------HHHHhcc----------------------------------chHHHHHHHHHHHHHHHHhhhhccc
Confidence 0111000 1122334555555555443333221
Q ss_pred CCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--CCeEEEeecCCC
Q 005023 407 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--THRLQHSFRNGP 484 (718)
Q Consensus 407 P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~--~g~l~~~~~~g~ 484 (718)
.. .-++..--| ++..|...++.+++ +.+++.+.+..+.|.+....-. ...+...+. ..
T Consensus 100 ~~--~D~l~G~aG-i~~~ll~~~~~~~~----------------~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 159 (355)
T PF05147_consen 100 ND--YDLLSGLAG-IGLYLLSLYEKTKD----------------PKYLDIIEKILEKLLESIINDDPSENQIGSEWK-EG 159 (355)
T ss_dssp GG--CSTTTSHHH-HHHHHCCHHHHHCC----------------HHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TT
T ss_pred cc--chhhcccHH-HHHHHHHHHhhccc----------------hHHHHHHHHHHHHHHHHHhhcccccCCCccccC-CC
Confidence 11 122333333 35556666666655 6788888888888876654310 000111111 11
Q ss_pred CCCCCCcccHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHH
Q 005023 485 SKAPGFLDDYAFLISGLLDLY-EFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 563 (718)
Q Consensus 485 ~~~~~~l~DyA~li~all~LY-eaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns 563 (718)
....|+....+=.+.+|+.+| +.+.++++.+.+.++.+...+++... .++|......... +. -..--.|.+
T Consensus 160 ~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~--~~~WC~G~~ 231 (355)
T PF05147_consen 160 FINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTD-DGGWPDNRNNSNY-----KS--RPSWCYGSP 231 (355)
T ss_dssp BEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TG-CCT--SECTHHHH-----HC----SSSSSHH
T ss_pred CccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcc-cCCCCCCCCcccc-----cc--ccccccCcH
Confidence 123588889999999999999 69999999999999999998887543 3445543221100 00 123456777
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005023 564 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 597 (718)
Q Consensus 564 ~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~ 597 (718)
=++.++.+++..+++ +.+.+.+++++.....
T Consensus 232 Gi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 232 GILLALLKAYKILDD---EEYDEEAEQALESILQ 262 (355)
T ss_dssp HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhch---HHHHHHHHHHHHHHHH
Confidence 788888999999864 7899988888877654
No 144
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.29 E-value=0.062 Score=45.68 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=37.9
Q ss_pred EEEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 16 HFLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 16 ii~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
++..+||+||+.+.+ .++.-. ++..|..+.||.++.+.. .+.+....+|..++|+.+ + +|+++
T Consensus 3 ~f~~~~Cp~C~~~~~-~L~~~~----i~~~~~~~~v~~~~~~~~---~~~~l~~~~g~~~vP~v~-i--~g~~i 65 (84)
T TIGR02180 3 VFSKSYCPYCKKAKE-ILAKLN----VKPAYEVVELDQLSNGSE---IQDYLEEITGQRTVPNIF-I--NGKFI 65 (84)
T ss_pred EEECCCChhHHHHHH-HHHHcC----CCCCCEEEEeeCCCChHH---HHHHHHHHhCCCCCCeEE-E--CCEEE
Confidence 345699999999873 222211 223377777877654322 222334457888999974 4 56666
No 145
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.21 E-value=0.042 Score=68.96 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=52.0
Q ss_pred cCCcEEE---EcCCchhhhhhccccCcHHHHHHhh----cccEEEEe-----cCCCCc-chHHHHHH-------------
Q 005023 12 TRRTHFL---INTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKV-----DREERP-DVDKVYMT------------- 65 (718)
Q Consensus 12 e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln----~~Fv~vkv-----D~ee~p-d~d~~y~~------------- 65 (718)
.+|++++ .+||+.|+.+. |.+.++-+ +.|+.|-| |.++.+ ++.+..++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~------P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVL------PDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHh------HHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 4788877 48999999744 44443333 23655555 332211 11111000
Q ss_pred HHHHhcCCCCCCcEEEeCCCCceeecc-cccCCCCCCCcccHHHHHHHHHHHHh
Q 005023 66 YVQALYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDAWD 118 (718)
Q Consensus 66 ~~q~~~g~~GwP~~vfl~p~g~p~~~~-~y~p~~~~~~~~~f~~~L~~i~~~w~ 118 (718)
.....+++.|||+++|++++|+++... +...+ +.+.++|+.+...+.
T Consensus 493 ~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~------~~l~~~l~~~l~~~~ 540 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHR------KDLDDLVEAALQYYG 540 (1057)
T ss_pred HHHHhcCCCccceEEEECCCCeEEEEEecccCH------HHHHHHHHHHHHhhc
Confidence 111236889999999999999988532 21221 245555555554444
No 146
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.11 E-value=0.38 Score=52.75 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHHH
Q 005023 422 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGL 501 (718)
Q Consensus 422 I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~al 501 (718)
+.+|..+++++++ +++.+.|+++.+.+++.-....+.++.| | .+=.+.++
T Consensus 230 ~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~lCH----G----------~~G~~~~l 279 (343)
T cd04794 230 VYLLAKAYLVFKE----------------EQYLEAAIKCGELIWKRGLLKKGPGLCH----G----------IAGNAYAF 279 (343)
T ss_pred HHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCccCCCcccc----C----------ccchHHHH
Confidence 4467788888887 7899999998887754311101112222 2 23347899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005023 502 LDLYEFGSGTKWLVWAIELQNTQDELFL 529 (718)
Q Consensus 502 l~LYeaTgd~~~L~~A~~L~~~~~~~F~ 529 (718)
+.+|+.|++++|+++|..+++.+.+...
T Consensus 280 L~~~~~~~~~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 280 LLLYRLTGDLKYLYRACKFAEFLINYGF 307 (343)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999887653
No 147
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.06 E-value=0.041 Score=52.17 Aligned_cols=53 Identities=9% Similarity=0.004 Sum_probs=40.7
Q ss_pred HHHHHHhh-cccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceeecc-cccCC
Q 005023 36 EGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYFPP 97 (718)
Q Consensus 36 ~~va~~ln-~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~~~-~y~p~ 97 (718)
+++++.++ ..+..+|||+++.|++... +|+.|+|+.+|+. +|+++... ++.|.
T Consensus 59 eELa~e~~~~~v~~akVDiD~~~~LA~~--------fgV~siPTLl~Fk-dGk~v~~i~G~~~k 113 (132)
T PRK11509 59 GELLREFPDYTWQVAIADLEQSEAIGDR--------FGVFRFPATLVFT-GGNYRGVLNGIHPW 113 (132)
T ss_pred HHHHHHhcCCceEEEEEECCCCHHHHHH--------cCCccCCEEEEEE-CCEEEEEEeCcCCH
Confidence 45666665 3478999999999999887 7889999888886 88988543 55553
No 148
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=94.99 E-value=0.19 Score=57.52 Aligned_cols=167 Identities=12% Similarity=0.054 Sum_probs=105.3
Q ss_pred hhchHHHHHHHHHHHHHHh--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe--ecCC-CCCCC
Q 005023 414 IVSWNGLVISSFARASKIL--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNG-PSKAP 488 (718)
Q Consensus 414 lt~WNgl~I~ALa~A~~~~--~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~--~~~g-~~~~~ 488 (718)
+-.-+.+.+.+|.-||... +| +.+|+.|+++++.|...+-.| +|.-+.. .+.+ .....
T Consensus 75 ~fEt~iR~lGgLLSay~ls~~~d----------------~~lL~kA~~lad~Ll~aF~t~-~g~P~~~~n~~~~~~~~~~ 137 (452)
T PF01532_consen 75 VFETTIRVLGGLLSAYDLSGEGD----------------PILLSKAVELADRLLPAFDTP-TGIPYPRVNLRTGGKNRWP 137 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHGGGGSSS-SS---SEEETTTCEEETTC
T ss_pred hHHhhhHhhhhhHHHHHHHhccc----------------hHHHHHHHHHHHHHHHhccCC-CccccceeeecccCCCCCC
Confidence 3445688999999999999 77 789999999999999888443 5543332 2221 11111
Q ss_pred ---CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCC--CCCccccccccCCCCCCCChHH
Q 005023 489 ---GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG--EDPSVLLRVKEDHDGAEPSGNS 563 (718)
Q Consensus 489 ---~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~--~~~~l~~r~k~~~D~a~PS~ns 563 (718)
..+.+.+-++.=+..|.++|||++|.+.|.++.+.+.+.-......|.+-..- ....... ......+++
T Consensus 138 ~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~------~~~~~Ga~~ 211 (452)
T PF01532_consen 138 GGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTS------SSISLGAGG 211 (452)
T ss_dssp CGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSS------TEE-SSTTT
T ss_pred CCcccccccccceechhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccc------cccccCCCc
Confidence 23556667788889999999999999999999988876210000112221110 0111100 111122222
Q ss_pred -HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 005023 564 -VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 604 (718)
Q Consensus 564 -~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~~~p~ 604 (718)
..-.-|++.+.++|.. ++.|++.-++.++.+...+...|.
T Consensus 212 DS~YEYLlK~~lL~g~~-d~~~~~~~~~a~~~i~~~Ll~~~~ 252 (452)
T PF01532_consen 212 DSFYEYLLKMYLLLGGT-DEQYRDMYDEAVDAIKKHLLFRPS 252 (452)
T ss_dssp HHHHHHHHHHHHHTTTT-THHHHHHHHHHHHHHHHHTEEEBT
T ss_pred chHHHhhhhhhhhcCcc-chHHHHHHHHHHHHHHHHhhccCC
Confidence 3678899999999843 478898888888888777655543
No 149
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=94.84 E-value=0.061 Score=47.01 Aligned_cols=73 Identities=23% Similarity=0.212 Sum_probs=41.3
Q ss_pred CCcEEEE---cCCchhhhhhccccCcHHHHHHhh--cccEEEEecCCCC-cchHH----------------HHHHHHHHh
Q 005023 13 RRTHFLI---NTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREER-PDVDK----------------VYMTYVQAL 70 (718)
Q Consensus 13 ~K~ii~y---~~C~wChvM~~esf~d~~va~~ln--~~Fv~vkvD~ee~-pd~d~----------------~y~~~~q~~ 70 (718)
||+++.+ +||..|...-... .++.+.++ +.|..|-|..++. .+..+ -........
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l---~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKL---KELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 6788664 7898888744321 22444444 4554554444332 11111 112233445
Q ss_pred cCCCCCCcEEEeCCCCce
Q 005023 71 YGGGGWPLSVFLSPDLKP 88 (718)
Q Consensus 71 ~g~~GwP~~vfl~p~g~p 88 (718)
++..++|+.++++|+|+.
T Consensus 78 ~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 78 YGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp TT-TSSSEEEEEETTSBE
T ss_pred CCCCcCCEEEEECCCCCC
Confidence 788999999999999974
No 150
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=94.69 E-value=1.9 Score=47.91 Aligned_cols=82 Identities=16% Similarity=0.063 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHH
Q 005023 421 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 500 (718)
Q Consensus 421 ~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~a 500 (718)
+..+|..+++++++ +++.+.|.++...+...... .+ ....+++....+=.+..
T Consensus 249 i~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~--~~---------~~~~~~lChG~~G~~~~ 301 (382)
T cd04793 249 IARALQLAGKALDD----------------QKLQEAAEKILKAALKDKKQ--LS---------KLISPTLCHGLAGLLFI 301 (382)
T ss_pred HHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHhChhh--hc---------cCCCCCcCccHHHHHHH
Confidence 45677788888887 78999999998776643211 00 11234566677888999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005023 501 LLDLYEFGSGTKWLVWAIELQNTQDELFL 529 (718)
Q Consensus 501 ll~LYeaTgd~~~L~~A~~L~~~~~~~F~ 529 (718)
++.+|+.|++++|++.|..+.+.++..+-
T Consensus 302 l~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 330 (382)
T cd04793 302 FYLLYKDTNTNEFKSALEYLLNQIISSYS 330 (382)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 151
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=94.59 E-value=0.16 Score=55.89 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=79.4
Q ss_pred hHHhhhhhcCCcEEEE--cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEE
Q 005023 4 RSFCGGTKTRRTHFLI--NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 81 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~y--~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vf 81 (718)
+|++.||+.+++.++| .--.-...|++-+|.|.-|.+.+-..||.|||+.-+- -|.++.+ +|-.--.|-..|
T Consensus 10 eAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~-----aa~qFs~-IYp~v~vPs~ff 83 (506)
T KOG2507|consen 10 EAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSV-----AATQFSA-IYPYVSVPSIFF 83 (506)
T ss_pred HHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCch-----hhhhhhh-hcccccccceee
Confidence 6889999999988776 3445678999999999999999999999999997663 2223322 355567899999
Q ss_pred eCCCCceeecccccCCCCCCCcccHHHHHHHHHHHHhh
Q 005023 82 LSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDK 119 (718)
Q Consensus 82 l~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~~~w~~ 119 (718)
+.-.|.|+...+-+- +--++-.+|.++|.-
T Consensus 84 Ig~sGtpLevitg~v--------~adeL~~~i~Kv~~~ 113 (506)
T KOG2507|consen 84 IGFSGTPLEVITGFV--------TADELASSIEKVWLG 113 (506)
T ss_pred ecCCCceeEEeeccc--------cHHHHHHHHHHHHHH
Confidence 999999998765443 234678888888863
No 152
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=94.52 E-value=3.2 Score=44.72 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 005023 207 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 286 (718)
Q Consensus 207 ~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~ 286 (718)
+++.+++...++++.. |-+-+|||.- | ++-.=-.+..|..+.++.+|-+.. +.-..+.+++++||.+
T Consensus 48 ~~~~~~i~~g~~r~l~---~q~~dGsf~~------w--~~~~~s~wlTA~v~~~l~~a~~~~--~v~~~~l~~a~~wL~~ 114 (297)
T cd02896 48 DEALKYIRQGYQRQLS---YRKPDGSYAA------W--KNRPSSTWLTAFVVKVFSLARKYI--PVDQNVICGSVNWLIS 114 (297)
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCccC------C--CCCCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHh
Confidence 4788888888888876 6778899953 3 111344667999999999997654 2345788999999999
Q ss_pred hccCCCCceee
Q 005023 287 DMIGPGGEIFS 297 (718)
Q Consensus 287 ~m~~p~Ggf~s 297 (718)
. +.++|+|-.
T Consensus 115 ~-Q~~dG~f~e 124 (297)
T cd02896 115 N-QKPDGSFQE 124 (297)
T ss_pred c-CCCCCeeCC
Confidence 6 888998854
No 153
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.39 E-value=0.11 Score=46.76 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=39.5
Q ss_pred hhhcCCcE-EEEcCCchhhhhhccccCcHHHHHHhhcccEEE-EecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCC
Q 005023 9 GTKTRRTH-FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 86 (718)
Q Consensus 9 Ak~e~K~i-i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~v-kvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g 86 (718)
..++++.+ +..+||+||+.+.+ +|+++=|+. .+|.++.|+... ++++...++|...+|.. |+ +|
T Consensus 4 ~i~~~~Vvvysk~~Cp~C~~ak~----------~L~~~~i~~~~vdid~~~~~~~-~~~~l~~~tg~~tvP~V-fi--~g 69 (99)
T TIGR02189 4 MVSEKAVVIFSRSSCCMCHVVKR----------LLLTLGVNPAVHEIDKEPAGKD-IENALSRLGCSPAVPAV-FV--GG 69 (99)
T ss_pred hhccCCEEEEECCCCHHHHHHHH----------HHHHcCCCCEEEEcCCCccHHH-HHHHHHHhcCCCCcCeE-EE--CC
Confidence 34455543 34599999999774 444443322 345556666543 34444556788888985 54 45
Q ss_pred cee
Q 005023 87 KPL 89 (718)
Q Consensus 87 ~p~ 89 (718)
+.+
T Consensus 70 ~~i 72 (99)
T TIGR02189 70 KLV 72 (99)
T ss_pred EEE
Confidence 555
No 154
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=94.38 E-value=0.071 Score=49.47 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.1
Q ss_pred cCCCCCCcEEEeCCCCceeec
Q 005023 71 YGGGGWPLSVFLSPDLKPLMG 91 (718)
Q Consensus 71 ~g~~GwP~~vfl~p~g~p~~~ 91 (718)
+|..|+|++++++++|+..+.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEE
Confidence 577889999999999998853
No 155
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=94.18 E-value=0.13 Score=42.04 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=34.6
Q ss_pred EEEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 16 HFLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 16 ii~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
+++.+||++|+.+.+ .|+. .+.-..+||.++.+...+.+ ...+|..+.|+.++- |+.+
T Consensus 4 lf~~~~C~~C~~~~~-~l~~--------~~i~~~~vdi~~~~~~~~~~----~~~~~~~~vP~~~~~---~~~~ 61 (74)
T TIGR02196 4 VYTTPWCPPCKKAKE-YLTS--------KGIAFEEIDVEKDSAAREEV----LKVLGQRGVPVIVIG---HKII 61 (74)
T ss_pred EEcCCCChhHHHHHH-HHHH--------CCCeEEEEeccCCHHHHHHH----HHHhCCCcccEEEEC---CEEE
Confidence 355699999999753 2332 12333456666654432222 223688999988873 6664
No 156
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=93.97 E-value=0.14 Score=48.57 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=47.5
Q ss_pred hhhhhcCCcEEE---Ec-CCchhhhhhccccCcHHHHHH-hhcccEEEEecCCCCcchHHHHHHH-------------HH
Q 005023 7 CGGTKTRRTHFL---IN-TCHWCHVMEVESFEDEGVAKL-LNDWFVSIKVDREERPDVDKVYMTY-------------VQ 68 (718)
Q Consensus 7 ~~Ak~e~K~ii~---y~-~C~wChvM~~esf~d~~va~~-ln~~Fv~vkvD~ee~pd~d~~y~~~-------------~q 68 (718)
..+.-.+|++++ .+ ||..|+.... .=.++.+. -++.+..|-|..+..+.+.+...+. ..
T Consensus 22 ~l~~~~gk~~vv~f~~~~~Cp~C~~~~p---~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 98 (146)
T PF08534_consen 22 SLSDFKGKPVVVNFWASAWCPPCRKELP---YLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALA 98 (146)
T ss_dssp EGGGGTTSEEEEEEESTTTSHHHHHHHH---HHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHH
T ss_pred cHHHhCCCeEEEEEEccCCCCcchhhhh---hHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHH
Confidence 344456788654 36 9999998553 11222332 3343444444444433333322210 11
Q ss_pred HhcCCC---------CCCcEEEeCCCCceeecc-cccC
Q 005023 69 ALYGGG---------GWPLSVFLSPDLKPLMGG-TYFP 96 (718)
Q Consensus 69 ~~~g~~---------GwP~~vfl~p~g~p~~~~-~y~p 96 (718)
.-+|.. ++|++++++++|+..+.. ++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 99 KALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 114544 999999999999999754 4444
No 157
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=93.95 E-value=0.6 Score=48.89 Aligned_cols=156 Identities=18% Similarity=0.255 Sum_probs=95.4
Q ss_pred hhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC----------ChHHHHHHHHHHHHHHHHhc
Q 005023 399 DVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS----------DRKEYMEVAESAASFIRRHL 468 (718)
Q Consensus 399 ~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~----------~~~~~l~~A~~~~~~l~~~~ 468 (718)
..|..|..|.+.+.|++.||-.|-.++..=.+- .-||.|.-|- ...++|+.|-++++|+.+.+
T Consensus 110 gvr~~~alp~l~~~~v~Gw~D~~gGg~pWR~q~-------~f~N~P~NgPa~I~~ar~~~~~~krL~~AMK~~dWi~~~L 182 (377)
T COG4833 110 GVRRRRALPKLTNQFVEGWVDEDGGGIPWRKQD-------QFFNAPANGPAGIFLARYPDQYGKRLKRAMKMADWIDRTL 182 (377)
T ss_pred ceeccccchhHHHhhhhccccccCCcccccccc-------eeecCCCCCcceEEEeechHHHHHHHHHHHHHHHHHHhhc
Confidence 356677888899999999998776555432211 1122222110 01358999999999999999
Q ss_pred cccCCCeEEEe---ecCCCCCC-CCCcccHHHH--HHHHHHHHH-HcCChHHHHHHHHHHHHHHHhcccccCCccccCCC
Q 005023 469 YDEQTHRLQHS---FRNGPSKA-PGFLDDYAFL--ISGLLDLYE-FGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG 541 (718)
Q Consensus 469 ~d~~~g~l~~~---~~~g~~~~-~~~l~DyA~l--i~all~LYe-aTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~ 541 (718)
.|+ +|.++.. -.+|+... ..+.+-+... +++-|+||+ .+.+.+|+..+.++.....++... -|-+-+..+
T Consensus 183 id~-DGlV~DGi~~ledGt~lvr~~~tYcQGV~IGle~~L~Lr~~~a~~A~Y~a~~h~~vaav~~~mT~--~Gv~~~e~g 259 (377)
T COG4833 183 IDP-DGLVFDGIKALEDGTSLVRAQYTYCQGVVIGLETELALRTGPAARARYCARVHRLVAAVNEHMTP--LGVLRGEAG 259 (377)
T ss_pred cCC-CcchhhhhhhhccCchhheeeccccceeEeechhhhhhhcCchHHHHHHHHHHHHHHHHHHhcCc--cceeecCCC
Confidence 996 4543322 23343322 1223333333 458899999 788889999999999999988742 233333222
Q ss_pred -CCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005023 542 -EDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 578 (718)
Q Consensus 542 -~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~ 578 (718)
.|+.+. -++.+.-|.-+..-+.+
T Consensus 260 gGDgGLF--------------KGI~~RYlaDva~~lp~ 283 (377)
T COG4833 260 GGDGGLF--------------KGITARYLADVATTLPG 283 (377)
T ss_pred CCccchh--------------hhHHHHHHHHHHHhcCC
Confidence 222221 24667777777766654
No 158
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.074 Score=54.98 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=49.4
Q ss_pred hhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc--ccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEe
Q 005023 8 GGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 82 (718)
Q Consensus 8 ~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~--~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl 82 (718)
.++.-.|.+++ .+||..|+..+ |-...+-|+ .+|-.|||++|--....- +|+...||.||+
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~Ia------P~Fs~lankYp~aVFlkVdVd~c~~taa~--------~gV~amPTFiff 81 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIA------PIFSDLANKYPGAVFLKVDVDECRGTAAT--------NGVNAMPTFIFF 81 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhh------hHHHHhhhhCcccEEEEEeHHHhhchhhh--------cCcccCceEEEE
Confidence 45566788876 49999999987 333444553 499999999987665554 788899999998
Q ss_pred CCCCcee
Q 005023 83 SPDLKPL 89 (718)
Q Consensus 83 ~p~g~p~ 89 (718)
- +|.-+
T Consensus 82 ~-ng~ki 87 (288)
T KOG0908|consen 82 R-NGVKI 87 (288)
T ss_pred e-cCeEe
Confidence 6 55555
No 159
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=93.85 E-value=0.22 Score=42.18 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=36.6
Q ss_pred EEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 18 LINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 18 ~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
...||+||+.+.+ +.+-++-.|..+.||.++.. ..+....+.++|..++|.. |+ +|+.+
T Consensus 6 ~~~~Cp~C~~~~~-------~l~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~g~~~~P~v-~~--~g~~i 64 (82)
T cd03419 6 SKSYCPYCKRAKS-------LLKELGVKPAVVELDQHEDG---SEIQDYLQELTGQRTVPNV-FI--GGKFI 64 (82)
T ss_pred EcCCCHHHHHHHH-------HHHHcCCCcEEEEEeCCCCh---HHHHHHHHHHhCCCCCCeE-EE--CCEEE
Confidence 3489999999763 23334445767777766541 2223344556888899995 55 45565
No 160
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=93.80 E-value=0.24 Score=55.86 Aligned_cols=271 Identities=18% Similarity=0.240 Sum_probs=120.5
Q ss_pred HHHHHHHhCCCcccCCCcEEE---Eec------CCCCC--CCCCc-chH-HHHHH--HHHHHHHHHHccCChHHHHHHHH
Q 005023 215 FTLQCMAKGGIHDHVGGGFHR---YSV------DERWH--VPHFE-KML-YDQGQ--LANVYLDAFSLTKDVFYSYICRD 279 (718)
Q Consensus 215 ~TL~~m~~gGi~D~v~GGF~R---Ysv------D~~W~--vPHFE-KmL-yDnA~--ll~~ya~Ay~~t~~~~y~~~A~~ 279 (718)
+-+++|-.-.++|---=.+-| |.. ...|. .|.|| |.| +-||- ||++-...|+.++|..-+.-++.
T Consensus 159 rfi~afWnAHV~DW~~Ld~~RHG~Y~~~~~~vd~~~~p~lppf~~tkGLTFvNaG~DLiYaA~~l~~~~gd~~a~~Wak~ 238 (557)
T PF06917_consen 159 RFIKAFWNAHVEDWQSLDMSRHGDYGKPHDVVDPSKWPGLPPFFETKGLTFVNAGNDLIYAASMLAKYDGDEGALAWAKH 238 (557)
T ss_dssp HHHHHHHHHHEEETTTTEE-S-B-TT----SGGGS------TTEEESS---HHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhccccccCccCCCCCCcChhhccCCCcchhccCceeeecCcHHHHHHHHHHhccCchHHHHHHHH
Confidence 345556555566644333333 221 34454 35666 444 45774 56665678889999777666665
Q ss_pred HH-HHHHHhccCCCCc---e--eeeccCCcccccCcccccCCceEeechHHHHHHhchhH-HHHHHHhc-ccCCCCcCCC
Q 005023 280 IL-DYLRRDMIGPGGE---I--FSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA-ILFKEHYY-LKPTGNCDLS 351 (718)
Q Consensus 280 ~~-~~l~~~m~~p~Gg---f--~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~-~~~~~~~~-v~~~Gn~~~~ 351 (718)
.. .||+. ++|+-| | =+.+--. .|.+ +.+. .+..|+.+ .-|-..|| +..+||+-
T Consensus 239 L~~QYVla--R~PeTG~~vYQFssp~kr~-~p~d-d~~T-------------~S~~GDRAqRQFGPEfG~iA~EanvL-- 299 (557)
T PF06917_consen 239 LYRQYVLA--RHPETGLPVYQFSSPLKRE-PPAD-DNDT-------------QSWYGDRAQRQFGPEFGDIAREANVL-- 299 (557)
T ss_dssp HHHHTTTT--S-TTT----S-SEEE---S---S--TT----------------GGG--HHHHHHHHHH-TT--GGGEE--
T ss_pred HHHHhhhc--cCCCCCCceeeecCccccC-CCcc-cccc-------------ccchhhHHHhhhccccchhHhhhhhe--
Confidence 43 34543 677732 2 2222211 1111 0010 11234332 12333332 23344421
Q ss_pred CCCCCCCccCCcce-eeccCCc--hHHHHhcCCCHHHHHH-HHH---HHHHHHHhhhccCCCCCC-Cchhhhch------
Q 005023 352 RMSDPHNEFKGKNV-LIELNDS--SASASKLGMPLEKYLN-ILG---ECRRKLFDVRSKRPRPHL-DDKVIVSW------ 417 (718)
Q Consensus 352 ~~~dp~~~~eg~nv-L~~~~~~--~~~a~~~g~~~~~~~~-~l~---~~r~~L~~~R~~R~~P~~-Ddkilt~W------ 417 (718)
|.|..- +....++ -++++++|....++.+ .++ ...+.-++.-++-.+|.+ |-+-||..
T Consensus 300 --------Fk~d~~~i~~dn~La~l~l~~~lG~~~~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdG 371 (557)
T PF06917_consen 300 --------FKGDPRPIVQDNPLAQLELARQLGQDDKEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDG 371 (557)
T ss_dssp ---------TTHHHHHHTHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-B
T ss_pred --------eccCCCceeecCHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCccccccc
Confidence 221100 0001111 2466677766655443 222 233334444445556632 22322221
Q ss_pred --------------HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCC
Q 005023 418 --------------NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG 483 (718)
Q Consensus 418 --------------Ngl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g 483 (718)
-+-.+.++++|+++.+| +.....+..++. ++-- |-+- ...+
T Consensus 372 YYG~KGtvl~~~p~~~~yll~~vra~~~s~D----------------~~Lw~~~~~m~~----~~gL---Gdig--~~~~ 426 (557)
T PF06917_consen 372 YYGKKGTVLKPFPADPDYLLPYVRAYRLSRD----------------PELWDLARTMAH----HFGL---GDIG--NAAG 426 (557)
T ss_dssp TTB-TT-EE--EE--HHHHHHHHHHHHHS------------------HHHHHHHHHHHH----HTT----EE-T--TBTT
T ss_pred ccCCCCCeeccccCchhHhHHHHHHHHcCCC----------------HHHHHHHHHHHh----hcCc---cccc--Cccc
Confidence 12247799999999887 677777777764 2210 1110 0111
Q ss_pred -CC-CCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCC
Q 005023 484 -PS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT 540 (718)
Q Consensus 484 -~~-~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~ 540 (718)
.+ .....-.+-.+++.|+|+||++|++++|++.|..+.+.+.++-+. + |||-.+
T Consensus 427 ~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~g~~l~~~~~~--~-GlF~~~ 482 (557)
T PF06917_consen 427 KEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQVGENLFEQHFH--R-GLFVAS 482 (557)
T ss_dssp BS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHEE--T-TEE-SS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcc--C-ceecCC
Confidence 11 112334456789999999999999999999999999988887654 3 455543
No 161
>PHA03050 glutaredoxin; Provisional
Probab=93.65 E-value=0.19 Score=45.92 Aligned_cols=78 Identities=10% Similarity=0.172 Sum_probs=41.1
Q ss_pred CchhHHhhhhhcCCcEEE--EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 1 MGRRSFCGGTKTRRTHFL--INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 1 ~~~~a~~~Ak~e~K~ii~--y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
|+.+.++.=.++++ |++ .+||+||+... ..|++-.|. ...|..|-||. +++- .-.+..+..++|+...|.
T Consensus 1 ~~~~~v~~~i~~~~-V~vys~~~CPyC~~ak-~~L~~~~i~---~~~~~~i~i~~--~~~~-~~~~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 1 MAEEFVQQRLANNK-VTIFVKFTCPFCRNAL-DILNKFSFK---RGAYEIVDIKE--FKPE-NELRDYFEQITGGRTVPR 72 (108)
T ss_pred ChHHHHHHHhccCC-EEEEECCCChHHHHHH-HHHHHcCCC---cCCcEEEECCC--CCCC-HHHHHHHHHHcCCCCcCE
Confidence 45555555555555 444 48999998754 222222110 01355555553 2221 122334445688889998
Q ss_pred EEEeCCCCcee
Q 005023 79 SVFLSPDLKPL 89 (718)
Q Consensus 79 ~vfl~p~g~p~ 89 (718)
.+ ++ |+.|
T Consensus 73 If-I~--g~~i 80 (108)
T PHA03050 73 IF-FG--KTSI 80 (108)
T ss_pred EE-EC--CEEE
Confidence 74 43 5655
No 162
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=93.45 E-value=22 Score=42.58 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=44.1
Q ss_pred CCcEEEEec-CCCCCCCCCcchHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 005023 230 GGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 297 (718)
Q Consensus 230 ~GGF~RYsv-D~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~--~~~y~~~A~~~~~~l~~~m~~p~Ggf~s 297 (718)
.||+- |+. +..|.+. -|-|..+.+++.+....+ ++.+.+.++++++||++ |++++|||.+
T Consensus 359 ~GGW~-fs~~~~~~pd~------d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~-~Qn~dGgf~~ 421 (634)
T cd02892 359 KGGWA-FSTANQGYPDS------DDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLG-MQNSNGGFAA 421 (634)
T ss_pred CCCCC-CCCCCCCCCCc------CchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHh-ccCCCCCEee
Confidence 56765 554 3334333 267889999888776653 56788999999999996 7899999854
No 163
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=93.30 E-value=0.22 Score=49.99 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=43.2
Q ss_pred cCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHH------------HHHHHhcCCCCC
Q 005023 12 TRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM------------TYVQALYGGGGW 76 (718)
Q Consensus 12 e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~------------~~~q~~~g~~Gw 76 (718)
.+|+++.+ +||+.|+.+... + .++.+..+.++|.|-.| ...+..+... .-....+|..+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~-l--~~~~~~~~~~vv~Is~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~ 147 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPI-I--KSIARAEETDVVMISDG--TPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI 147 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHH-H--HHHHHhcCCcEEEEeCC--CHHHHHHHHHhcCCCcceeechhHHHHhccCCcc
Confidence 57887664 788888876432 1 12333334456666533 2112211111 011124688899
Q ss_pred CcEEEeCCCCceeec
Q 005023 77 PLSVFLSPDLKPLMG 91 (718)
Q Consensus 77 P~~vfl~p~g~p~~~ 91 (718)
|.+++++++|+..+.
T Consensus 148 P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 148 PYGVLLDQDGKIRAK 162 (189)
T ss_pred ceEEEECCCCeEEEc
Confidence 999999999999864
No 164
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=93.28 E-value=0.13 Score=42.73 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=36.0
Q ss_pred EEEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhc-CCCCCCcEEEeCCCCceee
Q 005023 16 HFLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 16 ii~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~-g~~GwP~~vfl~p~g~p~~ 90 (718)
+++.+||+.|+.|.. +.+.+.-.|. .+|.++.++....+. .++ |..++|+. ++ .+|+++.
T Consensus 4 ly~~~~C~~C~~~~~-------~L~~~~~~~~--~idi~~~~~~~~~~~----~~~~~~~~vP~i-~~-~~g~~l~ 64 (77)
T TIGR02200 4 VYGTTWCGYCAQLMR-------TLDKLGAAYE--WVDIEEDEGAADRVV----SVNNGNMTVPTV-KF-ADGSFLT 64 (77)
T ss_pred EEECCCChhHHHHHH-------HHHHcCCceE--EEeCcCCHhHHHHHH----HHhCCCceeCEE-EE-CCCeEec
Confidence 456799999999764 1222233343 466666655544332 344 78899985 33 4777664
No 165
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=93.26 E-value=16 Score=43.78 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCc
Q 005023 153 PQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 232 (718)
Q Consensus 153 ~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~GG 232 (718)
...+++++.+.|... |...|+++.. |.+..+..|--+..-.. ..+ .+.+.++++.. =++.+.+|+
T Consensus 234 r~~a~~~~~~~i~~~-q~~~g~~~~~---~~~~~l~~lal~~~g~~------~~~----~~~~~l~~l~~-~~~~~~~g~ 298 (634)
T cd02892 234 RRKALRKAYEWILYR-DENTGYLGII---PPPKANNMLALWVLGYP------DSP----AFKRHLERIDD-FLWLGPEGM 298 (634)
T ss_pred HHHHHHHHHHHHHHH-hcCCCceeee---ehHHHHHHHHHHHcCCC------CCH----HHHHHHHHHHh-cEEEecCCc
Confidence 455677777777755 6778999874 34444443322221100 112 34444555444 244444676
Q ss_pred EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCC
Q 005023 233 FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGG 293 (718)
Q Consensus 233 F~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~-~p~G 293 (718)
++. ..+ .--+||-|+.+.++.++... +.+....+++++||.+.-. .+.|
T Consensus 299 ~~~-~~~--------~s~~wDTala~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~g 348 (634)
T cd02892 299 KMC-QTN--------GSQVWDTALAVQALLEAGLA---PEFDPALKKALDWLLESQILDNPG 348 (634)
T ss_pred EEE-cCC--------CCchHHHHHHHHHHHHcCCC---ccchHHHHHHHHHHHHHHcCCCCC
Confidence 643 111 12388999999999997432 3677889999999988432 4445
No 166
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=93.16 E-value=24 Score=42.26 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005023 230 GGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 297 (718)
Q Consensus 230 ~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~s 297 (718)
.||+- |++...+. --+-|-|..+.++..+ ....++.+....+++++||++ |++++|||-+
T Consensus 365 ~GGW~-f~~~~~~~-----pd~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~-~Qn~dGgw~a 424 (635)
T TIGR01507 365 PGGWA-FQFDNVYY-----PDVDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAG-MQSSNGGWGA 424 (635)
T ss_pred CCccC-CCCCCCCC-----CCchhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHH-hcCCCCCEec
Confidence 56666 56544432 1245788888888776 334566788999999999998 8999999843
No 167
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=93.10 E-value=0.17 Score=57.07 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=47.8
Q ss_pred hhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhhc---ccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeC
Q 005023 10 TKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 83 (718)
Q Consensus 10 k~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~---~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~ 83 (718)
...++++++ .+||+.|+.|... | .++++.++. .+..++||.+.+. +.. .+..+.|+.+|+.
T Consensus 361 ~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~i~~~~id~~~n~-~~~---------~~i~~~Pt~~~~~ 427 (462)
T TIGR01130 361 LDETKDVLVEFYAPWCGHCKNLAPI-Y--EELAEKYKDAESDVVIAKMDATAND-VPP---------FEVEGFPTIKFVP 427 (462)
T ss_pred ccCCCeEEEEEECCCCHhHHHHHHH-H--HHHHHHhhcCCCcEEEEEEECCCCc-cCC---------CCccccCEEEEEe
Confidence 345777766 3899999999864 3 557888876 6888999998763 222 3567899999996
Q ss_pred CCCc
Q 005023 84 PDLK 87 (718)
Q Consensus 84 p~g~ 87 (718)
..++
T Consensus 428 ~~~~ 431 (462)
T TIGR01130 428 AGKK 431 (462)
T ss_pred CCCC
Confidence 5544
No 168
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.01 E-value=1.5 Score=49.83 Aligned_cols=116 Identities=13% Similarity=0.053 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCC--------CCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG--------PSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQN 522 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g--------~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~ 522 (718)
++..+.+.++.+-+.+.. + ++| +..+|... .-...-+++--..+|+|+++.|++||....|+.+.++++
T Consensus 85 p~Lekr~D~vi~~~a~~Q-d-edG-Yl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~~qaTGkr~lldV~~rlAD 161 (589)
T COG3533 85 PELEKRIDEVVEELARAQ-D-EDG-YLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAAHQATGKRRLLDVVCRLAD 161 (589)
T ss_pred HHHHHHHHHHHHHHHHhh-c-cCC-cccceeeccCchhhhhccccchHHHHhHHHHhhhhHHHHhhCcchHHHHHHHHHH
Confidence 677777777776665443 4 234 33333222 112234566668999999999999999999999999999
Q ss_pred HHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005023 523 TQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 593 (718)
Q Consensus 523 ~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~ 593 (718)
.+..-| ++..+ .+.. .|.+. -+-.+|.+|+++||+ ++|.+.|+-.+.
T Consensus 162 hi~tvf-gp~~~---------------q~~g----~~gH~-eielAl~~Ly~~Tg~---~rYL~LA~~Fi~ 208 (589)
T COG3533 162 HIATVF-GPEED---------------QVPG----YCGHP-EIELALAELYRLTGD---QRYLDLARRFIH 208 (589)
T ss_pred hhhhhc-Ccccc---------------cccc----ccCCC-chhHHHHHHHHHhcC---hHHHHHHHHHHH
Confidence 998777 33221 1111 12232 467799999999996 889999865544
No 169
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.79 E-value=0.2 Score=42.72 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=37.0
Q ss_pred hhhcCCcE-EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCc
Q 005023 9 GTKTRRTH-FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 87 (718)
Q Consensus 9 Ak~e~K~i-i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~ 87 (718)
|.++++.+ +..+||+||+... ..++ -.+=.|..|-|| ++++.... -.++|....|..++ +|+
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak-~~L~------~~gi~y~~idi~--~~~~~~~~-----~~~~g~~~vP~i~i---~g~ 66 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAK-ATLK------EKGYDFEEIPLG--NDARGRSL-----RAVTGATTVPQVFI---GGK 66 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHH-HHHH------HcCCCcEEEECC--CChHHHHH-----HHHHCCCCcCeEEE---CCE
Confidence 44555544 3459999999965 3332 334446655444 44333222 12478889998854 666
Q ss_pred ee
Q 005023 88 PL 89 (718)
Q Consensus 88 p~ 89 (718)
.+
T Consensus 67 ~i 68 (79)
T TIGR02190 67 LI 68 (79)
T ss_pred EE
Confidence 65
No 170
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.66 E-value=0.25 Score=44.24 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=39.1
Q ss_pred hHHhhhhhcCCcEEE-E-----cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCC
Q 005023 4 RSFCGGTKTRRTHFL-I-----NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 77 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~-y-----~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP 77 (718)
+.++...++||.||- . +||+||+... +-|++ ++-.|.. +|.+++|++-+. +..++|....|
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak-~lL~~------~~i~~~~--~di~~~~~~~~~----l~~~tg~~tvP 69 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAV-QILKA------CGVPFAY--VNVLEDPEIRQG----IKEYSNWPTIP 69 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHH-HHHHH------cCCCEEE--EECCCCHHHHHH----HHHHhCCCCCC
Confidence 455666677666542 2 6899999854 33322 2223543 465565544333 23346766777
Q ss_pred cEEEeCCCCcee
Q 005023 78 LSVFLSPDLKPL 89 (718)
Q Consensus 78 ~~vfl~p~g~p~ 89 (718)
.. |++ |+.+
T Consensus 70 ~v-fi~--g~~i 78 (97)
T TIGR00365 70 QL-YVK--GEFV 78 (97)
T ss_pred EE-EEC--CEEE
Confidence 65 444 5655
No 171
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=92.17 E-value=3.3 Score=49.32 Aligned_cols=135 Identities=12% Similarity=0.070 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCC--C-CCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005023 454 MEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK--A-PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 529 (718)
Q Consensus 454 l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~~--~-~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~ 529 (718)
.+.|++.++|+.+.... +|.+++. +.+|... . ...+|.|+..++++..++..|+|..+++.--...+.+.+...
T Consensus 313 ~~~a~~~l~~l~~~q~~--~G~~~~~~~~dG~~~~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~ 390 (616)
T TIGR01577 313 HDRVDRFFRWAMQTQSR--DGSWQQRYYLNGRLAPLQWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLI 390 (616)
T ss_pred HHHHHHHHHHHHHhhCc--CCCcceEEecCCCCCCCCCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 47888889999887653 5666665 5677654 2 466777999999999999999998876654444444444332
Q ss_pred ccc-CCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHH---hCCCC-chHHHHHHHHHHHHHHHH
Q 005023 530 DRE-GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI---VAGSK-SDYYRQNAEHSLAVFETR 598 (718)
Q Consensus 530 D~~-~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~l---t~~~~-~~~y~e~a~~~l~~~~~~ 598 (718)
+.. .+ .... +.++ .+..-+..+..++....+|.+.+.+ .|+.. ...|++.|+++-+.+...
T Consensus 391 ~~~~~~-l~~~---~~~l----WEer~G~~~~t~a~~~aAL~~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~~ 456 (616)
T TIGR01577 391 LFIDPE-TPLP---CRDL----WEEREGVFTYTASAVYGGLDAAAAVADKLGEKRLAQNWKKAAEFIKRAVEER 456 (616)
T ss_pred HhccCC-CCCC---CCcc----ceecCCccCccHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHh
Confidence 210 11 1111 1111 1112245677777666666555554 44321 245666666666555433
No 172
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=92.04 E-value=0.51 Score=44.06 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=15.6
Q ss_pred CcEEEeCCCCceeecc-cccCC
Q 005023 77 PLSVFLSPDLKPLMGG-TYFPP 97 (718)
Q Consensus 77 P~~vfl~p~g~p~~~~-~y~p~ 97 (718)
|.+++++++|+..+.- ++.+.
T Consensus 111 p~~~lid~~G~v~~~~~g~~~~ 132 (140)
T cd03017 111 RSTFLIDPDGKIVKVWRKVKPK 132 (140)
T ss_pred eeEEEECCCCEEEEEEecCCcc
Confidence 8999999999988642 34443
No 173
>PRK10638 glutaredoxin 3; Provisional
Probab=91.80 E-value=0.28 Score=42.17 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=32.7
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
++.++|+|||... ..++. .+-.|..| |.+++++..+.+. .++|....|.. |. +|+.+
T Consensus 7 y~~~~Cp~C~~a~-~~L~~------~gi~y~~~--dv~~~~~~~~~l~----~~~g~~~vP~i-~~--~g~~i 63 (83)
T PRK10638 7 YTKATCPFCHRAK-ALLNS------KGVSFQEI--PIDGDAAKREEMI----KRSGRTTVPQI-FI--DAQHI 63 (83)
T ss_pred EECCCChhHHHHH-HHHHH------cCCCcEEE--ECCCCHHHHHHHH----HHhCCCCcCEE-EE--CCEEE
Confidence 4458999999854 22222 22235544 4455554443333 35788889966 44 46666
No 174
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=91.80 E-value=0.52 Score=38.27 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=34.0
Q ss_pred EEEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 16 HFLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 16 ii~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
+++..||++|+.+.. .++ ..+-.|..| |.++.+...+.+ +.+++.++.|+.++ +|+.+.
T Consensus 4 l~~~~~c~~c~~~~~-~l~------~~~i~~~~~--~i~~~~~~~~~~----~~~~~~~~vP~i~~---~~~~i~ 62 (73)
T cd02976 4 VYTKPDCPYCKATKR-FLD------ERGIPFEEV--DVDEDPEALEEL----KKLNGYRSVPVVVI---GDEHLS 62 (73)
T ss_pred EEeCCCChhHHHHHH-HHH------HCCCCeEEE--eCCCCHHHHHHH----HHHcCCcccCEEEE---CCEEEe
Confidence 355689999998652 222 233345544 444444433333 33568899998876 455553
No 175
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.64 E-value=0.32 Score=40.60 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=30.4
Q ss_pred EEEEcCCchhhhhhccccCcHHHHHHhhcccEEE-EecCCCCcchHHHHHHHHHHhcCCCCCCcEEE
Q 005023 16 HFLINTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVF 81 (718)
Q Consensus 16 ii~y~~C~wChvM~~esf~d~~va~~ln~~Fv~v-kvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vf 81 (718)
|++.++|++|+... ++|+++=|+. .+|.++.|+....+.. .|..+.|..++
T Consensus 3 ly~~~~Cp~C~~ak----------~~L~~~~i~~~~~di~~~~~~~~~~~~-----~g~~~vP~v~~ 54 (72)
T TIGR02194 3 VYSKNNCVQCKMTK----------KALEEHGIAFEEINIDEQPEAIDYVKA-----QGFRQVPVIVA 54 (72)
T ss_pred EEeCCCCHHHHHHH----------HHHHHCCCceEEEECCCCHHHHHHHHH-----cCCcccCEEEE
Confidence 45669999999865 2333333332 2455566655444332 37778999655
No 176
>PTZ00062 glutaredoxin; Provisional
Probab=91.49 E-value=0.48 Score=48.33 Aligned_cols=67 Identities=3% Similarity=-0.117 Sum_probs=45.1
Q ss_pred hHHhhhhhc--CCcEE--EEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 4 RSFCGGTKT--RRTHF--LINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 4 ~a~~~Ak~e--~K~ii--~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
+.+.+..++ ++.|+ ..+||+.|+.|.. ++ +++++-. .++.-++||+| +++.+.|+.
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~-vl--~~l~~~~-~~~~F~~V~~d----------------~~V~~vPtf 66 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMD-VC--NALVEDF-PSLEFYVVNLA----------------DANNEYGVF 66 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHH-HH--HHHHHHC-CCcEEEEEccc----------------cCcccceEE
Confidence 445555553 44443 2589999999983 33 2333322 46888889988 567899999
Q ss_pred EEeCCCCceeec
Q 005023 80 VFLSPDLKPLMG 91 (718)
Q Consensus 80 vfl~p~g~p~~~ 91 (718)
+|+. +|+.+-.
T Consensus 67 v~~~-~g~~i~r 77 (204)
T PTZ00062 67 EFYQ-NSQLINS 77 (204)
T ss_pred EEEE-CCEEEee
Confidence 9997 8888853
No 177
>PTZ00056 glutathione peroxidase; Provisional
Probab=91.31 E-value=0.66 Score=47.05 Aligned_cols=13 Identities=0% Similarity=-0.097 Sum_probs=11.5
Q ss_pred cEEEeCCCCceee
Q 005023 78 LSVFLSPDLKPLM 90 (718)
Q Consensus 78 ~~vfl~p~g~p~~ 90 (718)
+++|++++|+++.
T Consensus 147 ~tflID~~G~iv~ 159 (199)
T PTZ00056 147 GKFLVNKSGNVVA 159 (199)
T ss_pred EEEEECCCCcEEE
Confidence 6899999999984
No 178
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=91.23 E-value=6 Score=45.52 Aligned_cols=290 Identities=17% Similarity=0.169 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceEeechHHHHHHhchh
Q 005023 253 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 332 (718)
Q Consensus 253 DnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~ 332 (718)
.|=+.+..|.-||-+||++.|+..|.++.+=|+--+.-|.|-=++..+..| .-+.=|.|-.- ..
T Consensus 263 ~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ks---------G~~~n~~wasg-------g~ 326 (625)
T KOG2204|consen 263 TNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKS---------GDADNYGWASG-------GS 326 (625)
T ss_pred eeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhcccc---------CccCCcccccC-------cc
Confidence 366678888889999999999999999999999888888887677666555 12445666421 11
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCC---C-C
Q 005023 333 AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPR---P-H 408 (718)
Q Consensus 333 ~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~---P-~ 408 (718)
+ ++ ++.|.+ |... .-+.+..|.+. ..++...+|+-|-..-. |. | +
T Consensus 327 S-IL------aE~gtl------------------hlef--~~LS~ltg~P~--~~ekv~~IRk~l~k~ek--P~GLypnY 375 (625)
T KOG2204|consen 327 S-IL------AEFGTL------------------HLEF--SYLSKLTGNPT--FAEKVVKIRKVLNKSEK--PHGLYPNY 375 (625)
T ss_pred h-Hh------hhcCce------------------eeeh--HHhhhccCCch--HHHHHHHHHHHHHhhcC--CCCCCccc
Confidence 1 11 223331 1100 01222233332 33344444444432211 21 1 1
Q ss_pred CCchhhhchHHHHHH--HHHHH-HH-HhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEe-ec
Q 005023 409 LDDKVIVSWNGLVIS--SFARA-SK-ILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHS-FR 481 (718)
Q Consensus 409 ~Ddkilt~WNgl~I~--ALa~A-~~-~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~--g~l~~~-~~ 481 (718)
+..... -|--.+.+ ||... |. .++ ..+..|+++.++..+=.+++..|.+++..... |..|-+ |.
T Consensus 376 inP~sg-~wgq~~tslg~lgDSfyeyllK--------~wl~s~kTd~eak~my~~am~Ai~~~li~~S~~s~ltyi~e~~ 446 (625)
T KOG2204|consen 376 INPSSG-EWGQHHTSLGALGDSFYEYLLK--------AWLQSDKTDCEAKGMYEDAMIAIEKYLIFKSDGSGLTYISEWN 446 (625)
T ss_pred ccCCCC-chhhHHhHHhhhhhhHHHHHHH--------HHhhcCCcchHHHHhHHHHHHHHHhhheeccCCCCeEEEEecC
Confidence 111111 24333322 22111 00 010 02233444566777777888888887765333 344444 55
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHHHhcccccC--C--ccccCCCCCCcccccccc
Q 005023 482 NGPSKAPGFLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREG--G--GYFNTTGEDPSVLLRVKE 552 (718)
Q Consensus 482 ~g~~~~~~~l~DyA~li~all~LYeaTgd~-----~~L~~A~~L~~~~~~~F~D~~~--G--g~f~t~~~~~~l~~r~k~ 552 (718)
.|.. .--..-.|.+.-|+++|-...++. .|++.+.+++..+-+-|....+ | .|+++.. ++...+|..+
T Consensus 447 ~g~l--ehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~TchesY~rt~T~lgpesf~fn~~-~ea~~~r~~E 523 (625)
T KOG2204|consen 447 GGGL--EHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTRTTTKLGPESFWFNHG-VEAFAVRKVE 523 (625)
T ss_pred CCch--hhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhccccccChhhhcccCc-cchhhhhccc
Confidence 5432 111234578888999998888774 4999999999999887753322 2 3444432 2222233322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005023 553 DHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLM 609 (718)
Q Consensus 553 ~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~~~p~~~~~~ 609 (718)
. .-+-- ...+..+.-|.++|++ +.||+-+-+.++++.. ..+...++..+
T Consensus 524 s--yyILr--pEviEs~fYlwRlT~d---~kyR~wgweavqalek-~cr~~~G~~gl 572 (625)
T KOG2204|consen 524 S--YYILR--PEVIESYFYLWRLTGD---QKYRSWGWEAVQALEK-YCRVAKGYSGL 572 (625)
T ss_pred c--eeecC--HHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHH-hcccccchhhh
Confidence 1 11111 2456778889999996 7899999888876533 33444555543
No 179
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=91.15 E-value=0.66 Score=48.42 Aligned_cols=16 Identities=6% Similarity=-0.170 Sum_probs=14.1
Q ss_pred CCcEEEeCCCCceeec
Q 005023 76 WPLSVFLSPDLKPLMG 91 (718)
Q Consensus 76 wP~~vfl~p~g~p~~~ 91 (718)
.|++++++++|+++..
T Consensus 201 ~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 201 NFEKFLVDKNGKVVER 216 (236)
T ss_pred CceEEEECCCCcEEEE
Confidence 4999999999999953
No 180
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=91.10 E-value=1.5 Score=42.80 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.2
Q ss_pred hcCCCCCCcEEEeCCCCceeeccc
Q 005023 70 LYGGGGWPLSVFLSPDLKPLMGGT 93 (718)
Q Consensus 70 ~~g~~GwP~~vfl~p~g~p~~~~~ 93 (718)
.+|..++|.+++++|+|+.++.+.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeec
Confidence 467888999999999999987543
No 181
>PLN03009 cellulase
Probab=90.92 E-value=37 Score=39.47 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=69.4
Q ss_pred cCCCCCC---CCCCCChhHHH---HHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEec-----C
Q 005023 171 RFGGFGS---APKFPRPVEIQ---MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV-----D 239 (718)
Q Consensus 171 ~~GGfg~---apKFP~~~~l~---~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsv-----D 239 (718)
.-|||-. --||-.|.... +++.+.... +.-...+-+.+++.+.--|+-|.+ .++. .|+|| +-| |
T Consensus 72 lsGGwyDAGD~~Ky~~p~a~s~~~L~w~~~~f~-d~~~~~~~~diLdeikw~~D~llk--m~~~-~~~~y-~qVg~~~~D 146 (495)
T PLN03009 72 LTGGYYDAGDNVKFGFPMAFTTTMLAWSVIEFG-DLMPSSELRNSLVAIRWATDYLLK--TVSQ-PNRIF-VQVGDPIAD 146 (495)
T ss_pred CCCcceeCCCCceeccchHHHHHHHHHHHHHhH-hhCCccccHHHHHHHHHHHHHHHH--cccC-cCeEE-EEeCCCCCC
Confidence 4689844 46887766432 333332221 111123457888888888888887 5544 46777 455 3
Q ss_pred -CCCCCCCCcc---hHH---------H-HHHHHHHHHHHHHccC--ChHH----HHHHHHHHHHHHH
Q 005023 240 -ERWHVPHFEK---MLY---------D-QGQLANVYLDAFSLTK--DVFY----SYICRDILDYLRR 286 (718)
Q Consensus 240 -~~W~vPHFEK---mLy---------D-nA~ll~~ya~Ay~~t~--~~~y----~~~A~~~~~~l~~ 286 (718)
..|..|+-.+ -+| | =+..+.+++.|+++++ |+.| ++.|+++.+|..+
T Consensus 147 h~~W~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~ 213 (495)
T PLN03009 147 HNCWERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFADM 213 (495)
T ss_pred cccCcChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3477664322 122 1 2688889999999987 5555 6778888999886
No 182
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=90.87 E-value=0.8 Score=36.90 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=33.8
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
++..||++|+.+.. .+ +-.+-.|. .+|.+..++..+. .+..+|...+|..++ +|+.+.
T Consensus 5 y~~~~Cp~C~~~~~-~L------~~~~i~~~--~~di~~~~~~~~~----l~~~~~~~~~P~~~~---~~~~ig 62 (72)
T cd02066 5 FSKSTCPYCKRAKR-LL------ESLGIEFE--EIDILEDGELREE----LKELSGWPTVPQIFI---NGEFIG 62 (72)
T ss_pred EECCCCHHHHHHHH-HH------HHcCCcEE--EEECCCCHHHHHH----HHHHhCCCCcCEEEE---CCEEEe
Confidence 44589999998763 11 12222233 5666666553333 334578888997754 566663
No 183
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=90.81 E-value=0.64 Score=48.94 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=23.8
Q ss_pred cCCCCCCcEEEeCCCCceeecccccCCC
Q 005023 71 YGGGGWPLSVFLSPDLKPLMGGTYFPPE 98 (718)
Q Consensus 71 ~g~~GwP~~vfl~p~g~p~~~~~y~p~~ 98 (718)
.|..|+|+.||.+.+|++....+|.|++
T Consensus 215 lGv~GTPaiv~~d~~G~~~~v~G~~~~~ 242 (251)
T PRK11657 215 LGANATPAIYYMDKDGTLQQVVGLPDPA 242 (251)
T ss_pred cCCCCCCEEEEECCCCCEEEecCCCCHH
Confidence 5789999999999999987667787765
No 184
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=90.26 E-value=1.2 Score=42.55 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=15.8
Q ss_pred CcEEEeCCCCceeecc-cccCCC
Q 005023 77 PLSVFLSPDLKPLMGG-TYFPPE 98 (718)
Q Consensus 77 P~~vfl~p~g~p~~~~-~y~p~~ 98 (718)
|++++++|+|+....- +|.|++
T Consensus 121 ~~~~lid~~G~i~~~~~g~~~~~ 143 (154)
T PRK09437 121 RISFLIDADGKIEHVFDKFKTSN 143 (154)
T ss_pred eEEEEECCCCEEEEEEcCCCcch
Confidence 7889999999988643 455543
No 185
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=90.15 E-value=0.47 Score=39.62 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=33.3
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
+++++|++|+... +.++. .+=.|.. +|.+++|+.... ++.++|..+.|..+| +|+.+
T Consensus 6 y~~~~C~~C~ka~-~~L~~------~gi~~~~--~di~~~~~~~~e----l~~~~g~~~vP~v~i---~~~~i 62 (73)
T cd03027 6 YSRLGCEDCTAVR-LFLRE------KGLPYVE--INIDIFPERKAE----LEERTGSSVVPQIFF---NEKLV 62 (73)
T ss_pred EecCCChhHHHHH-HHHHH------CCCceEE--EECCCCHHHHHH----HHHHhCCCCcCEEEE---CCEEE
Confidence 4569999999855 22222 2223443 466666654443 344578788888744 34555
No 186
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.86 E-value=0.63 Score=40.85 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=35.9
Q ss_pred hhhhcCCcEEE-E-----cCCchhhhhhccccCcHHHHHHhhcccEEE-EecCCCCcchHHHHHHHHHHhcCCCCCCcEE
Q 005023 8 GGTKTRRTHFL-I-----NTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSV 80 (718)
Q Consensus 8 ~Ak~e~K~ii~-y-----~~C~wChvM~~esf~d~~va~~ln~~Fv~v-kvD~ee~pd~d~~y~~~~q~~~g~~GwP~~v 80 (718)
...++|+.|+- . +||.||+... ++|+++=|+. .+|.++.+++ +..+...+|....|..
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak----------~~L~~~~i~y~~idv~~~~~~----~~~l~~~~g~~tvP~v- 67 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVV----------QILNQLGVDFGTFDILEDEEV----RQGLKEYSNWPTFPQL- 67 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHH----------HHHHHcCCCeEEEEcCCCHHH----HHHHHHHhCCCCCCEE-
Confidence 34455555533 2 4999999844 3444333332 2344454443 3344456788888985
Q ss_pred EeCCCCcee
Q 005023 81 FLSPDLKPL 89 (718)
Q Consensus 81 fl~p~g~p~ 89 (718)
|++ |+.+
T Consensus 68 fi~--g~~i 74 (90)
T cd03028 68 YVN--GELV 74 (90)
T ss_pred EEC--CEEE
Confidence 654 5555
No 187
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=89.45 E-value=12 Score=45.36 Aligned_cols=140 Identities=20% Similarity=0.293 Sum_probs=96.4
Q ss_pred hhhhchHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCC
Q 005023 412 KVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG 489 (718)
Q Consensus 412 kilt~WNgl~--I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~ 489 (718)
+-+-+.+|+. +.||..-+.+++| ......|.+.+..|...... ...+.
T Consensus 690 ~~iga~~G~~g~~yal~~I~~~~~~----------------~~l~~~~~~~i~~le~~v~~--------------~~~~d 739 (963)
T COG4403 690 INIGAFTGLSGYFYALWKIYSVTRD----------------NYLIQSAENSIRHLEILVQK--------------SKDPD 739 (963)
T ss_pred cccccccccchhhhhhHHHHHhccc----------------HHHHHHHHHHHHHHHHHHhh--------------ccCcc
Confidence 4555666663 6788888888887 45566777776644332221 12245
Q ss_pred CcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHH
Q 005023 490 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 569 (718)
Q Consensus 490 ~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~L 569 (718)
+...-|=++..|+.+|+.|.++++++.|..+.+.+.+.....++ .+++.+- + --|+|-.+..|
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~---------s~~~l~g-----f---shg~sgi~~tL 802 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDS---------SETVLLG-----F---SHGASGIILTL 802 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccc---------ccceecc-----c---ccchHHHHHHH
Confidence 55667888999999999999999999999999998876643222 1112211 1 12556677789
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 005023 570 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 601 (718)
Q Consensus 570 lrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~~ 601 (718)
+.|+..||+ +.+.+.+.+.+..=......
T Consensus 803 ~~ly~~T~e---~~l~~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 803 LKLYEATGE---ESLLKKIKELLSYERMKFSD 831 (963)
T ss_pred HHHHHhcCc---HHHHHHHHHHHHHHHHHHHH
Confidence 999999996 88999998888765444443
No 188
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=89.34 E-value=12 Score=40.68 Aligned_cols=141 Identities=11% Similarity=0.007 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHhcc-------------ccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcC--ChHHHHH
Q 005023 452 EYMEVAESAASFIRRHLY-------------DEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS--GTKWLVW 516 (718)
Q Consensus 452 ~~l~~A~~~~~~l~~~~~-------------d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTg--d~~~L~~ 516 (718)
++-+...++.+||.++.. .+ +|+.-.+...+ .....+|-++++.+|+.+++.+. +..+.+.
T Consensus 43 ~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~-~Ggw~y~~~~~---~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~ 118 (348)
T cd02889 43 EFDPALKKALEWLLKSQIRDNPDDWKVKYRHLR-KGGWAFSTANQ---GYPDSDDTAEALKALLRLQKKPPDGKKVSRER 118 (348)
T ss_pred ccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCC-CCcCcccCcCC---CCCCCCChHHHHHHHHHhhccCcccchhhHHH
Confidence 466788899999998763 12 22211110000 01224588999999999988863 4556666
Q ss_pred HHHHHHHHHHhcccccCCccccCCCCCC-ccc-----cccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 005023 517 AIELQNTQDELFLDREGGGYFNTTGEDP-SVL-----LRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEH 590 (718)
Q Consensus 517 A~~L~~~~~~~F~D~~~Gg~f~t~~~~~-~l~-----~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~ 590 (718)
..+..+.+.... . .+|+|........ ..+ .-.....|...|+..+..+..|..+....... ...+.+.+++
T Consensus 119 i~~a~~~L~~~Q-~-~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~ 195 (348)
T cd02889 119 LYDAVDWLLSMQ-N-SNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH-RREIDPAIRR 195 (348)
T ss_pred HHHHHHHHHHhc-c-CCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCch-HHHHHHHHHH
Confidence 666667776653 2 3577653211100 000 00011123344556666667777666543211 1345566777
Q ss_pred HHHHHHHHH
Q 005023 591 SLAVFETRL 599 (718)
Q Consensus 591 ~l~~~~~~i 599 (718)
.++.+....
T Consensus 196 a~~~L~~~q 204 (348)
T cd02889 196 AVKYLEREQ 204 (348)
T ss_pred HHHHHHHhC
Confidence 777765443
No 189
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=88.85 E-value=2.9 Score=45.26 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=86.3
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCC--CCCCcccHH
Q 005023 419 GLVISSFARAS-KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDDYA 495 (718)
Q Consensus 419 gl~I~ALa~A~-~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~--~~~~l~DyA 495 (718)
+=++.+|++++ +.+++ +++.+.++++.+++.++....+++ +...+..... ..++...-+
T Consensus 170 ~Gi~~~L~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~WC~G~~ 231 (355)
T PF05147_consen 170 AGILYALLRLYKKGTKD----------------PEYLKLIEQILNFLLKHFNTDDGG--WPDNRNNSNYKSRPSWCYGSP 231 (355)
T ss_dssp HHHHHHHCHCCHHT--H----------------HHHHHCHHHHHHHHHHC--TGCCT----SECTHHHHHC--SSSSSHH
T ss_pred HHHHHHHHHhhhcccCc----------------hhHHHHHHHHHHHHHHhcCcccCC--CCCCCCccccccccccccCcH
Confidence 34677888888 57776 789999999999999888543334 2111111100 345556667
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHH
Q 005023 496 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 575 (718)
Q Consensus 496 ~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~l 575 (718)
=.+.+++.+++..+++.+.+.+.++.+.+.+.-. +.. +...--|++=.+..|..++..
T Consensus 232 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------------~~~lCHG~aG~~~~l~~~~~~ 289 (355)
T PF05147_consen 232 GILLALLKAYKILDDEEYDEEAEQALESILQKGL------FLN----------------NPSLCHGTAGILEILLDLYKY 289 (355)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T------CTT----------------SS-STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc------cCC----------------CCceeCchHHhHHHHHHHHHH
Confidence 7889999999999999999999998888766310 000 112233566677789999999
Q ss_pred hCCCCchHHHHHHHHHHHHH
Q 005023 576 VAGSKSDYYRQNAEHSLAVF 595 (718)
Q Consensus 576 t~~~~~~~y~e~a~~~l~~~ 595 (718)
+++ +.|.+.++++++..
T Consensus 290 ~~~---~~~~~~~~~~~~~~ 306 (355)
T PF05147_consen 290 TGD---EEYKELANKLIQKL 306 (355)
T ss_dssp H-----HCCHHHHHHHHHHH
T ss_pred cCC---HHHHHHHHHHHHHH
Confidence 986 67888888775554
No 190
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=88.76 E-value=1.2 Score=35.66 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=31.2
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEE-EEecCCCCcchHHHHHHHHHHhcCCCCCCcEEE
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 81 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~-vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vf 81 (718)
++..+|++|+... ++|+++=|+ ..+|.+++++..+. ++..+|..+.|+.++
T Consensus 4 y~~~~C~~C~~~~----------~~L~~~~i~y~~~dv~~~~~~~~~----l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 4 YTKPGCPYCKKAK----------EFLDEKGIPYEEVDVDEDEEAREE----LKELSGVRTVPQVFI 55 (60)
T ss_dssp EESTTSHHHHHHH----------HHHHHTTBEEEEEEGGGSHHHHHH----HHHHHSSSSSSEEEE
T ss_pred EEcCCCcCHHHHH----------HHHHHcCCeeeEcccccchhHHHH----HHHHcCCCccCEEEE
Confidence 4458999999865 344433222 33566665533333 344469999999876
No 191
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=88.74 E-value=0.56 Score=39.65 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=33.1
Q ss_pred EEEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 16 HFLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 16 ii~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
|++.++|++|+... ..|+. .+-.|..+.| ++.|..-+. .+..+|..++|.. |+ +|+.+
T Consensus 3 ly~~~~Cp~C~~a~-~~L~~------~~i~~~~~di--~~~~~~~~~----~~~~~g~~~vP~i-~i--~g~~i 60 (79)
T TIGR02181 3 IYTKPYCPYCTRAK-ALLSS------KGVTFTEIRV--DGDPALRDE----MMQRSGRRTVPQI-FI--GDVHV 60 (79)
T ss_pred EEecCCChhHHHHH-HHHHH------cCCCcEEEEe--cCCHHHHHH----HHHHhCCCCcCEE-EE--CCEEE
Confidence 45569999999855 33332 2323555444 444433222 3345788899996 44 45554
No 192
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=88.53 E-value=42 Score=37.37 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=68.2
Q ss_pred HHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCcEEEEec---CCCCCC---------CCCcchH
Q 005023 187 IQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HDHVGGGFHRYSV---DERWHV---------PHFEKML 251 (718)
Q Consensus 187 l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi---~D~v~GGF~RYsv---D~~W~v---------PHFEKmL 251 (718)
+..+-.|.+.+.| ..--++....+...|+.+..|.- +=+...||..... -..|.- |.--|-.
T Consensus 90 l~~l~~Y~~~t~D---~~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~v 166 (370)
T PF06202_consen 90 LIALQEYYRWTGD---YSFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGAAV 166 (370)
T ss_pred HHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCcch
Confidence 3345555555543 11123455566678888888543 1222467875332 355643 2222555
Q ss_pred HHHHHHHHHHHHHHHcc---CC---hHHHHHHHHHHHHHHHhccCCCCceee-eccCC
Q 005023 252 YDQGQLANVYLDAFSLT---KD---VFYSYICRDILDYLRRDMIGPGGEIFS-AEDAD 302 (718)
Q Consensus 252 yDnA~ll~~ya~Ay~~t---~~---~~y~~~A~~~~~~l~~~m~~p~Ggf~s-a~DAD 302 (718)
--||+...++..+..+. ++ ..|++.|+++-+=+.+.+++++.|||. ++|.+
T Consensus 167 EIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~ 224 (370)
T PF06202_consen 167 EIQALWYNALRFAAELAEKFGDELAARYREWAERLKESFEKRFWDEDRGYYADALDGD 224 (370)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence 55888777765544432 23 478899999999888999999877776 66654
No 193
>PLN03012 Camelliol C synthase
Probab=88.45 E-value=34 Score=41.68 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=37.0
Q ss_pred CcEEEEec-CCCCCCCCCcchHHHHHHHHHHHHHHH----HccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005023 231 GGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAF----SLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 297 (718)
Q Consensus 231 GGF~RYsv-D~~W~vPHFEKmLyDnA~ll~~ya~Ay----~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~s 297 (718)
||+. +|+ |..|.+.. |-|..+.+.+-.. .+.+++...+...++++||+. |++++|||.+
T Consensus 471 GgW~-Fs~~~~gyp~sD------~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGGwaa 534 (759)
T PLN03012 471 GAWT-FSDRDHGWQASD------CTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLS-LQSKNGGMTA 534 (759)
T ss_pred Cccc-ccCCCCCCCCCC------ccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh-ccCCCCCEee
Confidence 6665 454 66776653 3444443321111 122355667889999999998 9999999854
No 194
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=88.21 E-value=0.61 Score=49.94 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=35.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005023 257 LANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 296 (718)
Q Consensus 257 ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~ 296 (718)
-|..++++|+.++++.|++.+.++++||+. |+.|+|||-
T Consensus 49 e~~fLa~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWP 87 (290)
T TIGR02474 49 EIRYLAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWP 87 (290)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcC
Confidence 456678899999999999999999999998 999999983
No 195
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=88.10 E-value=1.9 Score=41.34 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=15.9
Q ss_pred CCCCCc----EEEeCCCCceeec
Q 005023 73 GGGWPL----SVFLSPDLKPLMG 91 (718)
Q Consensus 73 ~~GwP~----~vfl~p~g~p~~~ 91 (718)
.++.|+ +++++++|++...
T Consensus 113 ~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 113 SKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred CCCCCCCccEEEEEcCCCcEEEE
Confidence 357898 9999999999854
No 196
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=88.08 E-value=48 Score=39.85 Aligned_cols=125 Identities=17% Similarity=0.163 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCCCC-CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccc
Q 005023 453 YMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP-GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 530 (718)
Q Consensus 453 ~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~~~~-~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D 530 (718)
+.+.|++.++||.+.... +|.+++. +-+|++... -.+|-|++.|.++..+++... ..+....+.+++.+... +.
T Consensus 312 ~~~~a~~~~~~l~~~~~~--~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~-~p 387 (648)
T TIGR01535 312 DVDSALRSLDYLAKVQQD--NGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDH-AFYDKMLKPAADFIVKN-GP 387 (648)
T ss_pred CHHHHHHHHHHHHHHhcc--CCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHc-CC
Confidence 457888899999887754 4555555 578877544 678889999999988888544 45556667777777653 21
Q ss_pred ccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHh---CCCC-chHHHHHHHHHHHHH
Q 005023 531 REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV---AGSK-SDYYRQNAEHSLAVF 595 (718)
Q Consensus 531 ~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt---~~~~-~~~y~e~a~~~l~~~ 595 (718)
... . -+ .+..-+..|+..|....+|.+.+.+. |+.. ...|++.|+++-+.+
T Consensus 388 ~p~----------~---d~-WEer~g~~~~T~a~v~aaL~~Aa~iA~~~g~~~~a~~w~~~Ad~i~~~i 442 (648)
T TIGR01535 388 KTG----------Q---ER-WEEIGGYSPSTLAAEIAGLTAAADIAEQNGDAGSAQKYRETADNWQKLI 442 (648)
T ss_pred CCC----------C---Cc-ccccCCcCchhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 111 0 11 22223556777776556666666655 3311 234666665554443
No 197
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=87.92 E-value=1.2 Score=38.30 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=32.4
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCC--CCCCcEEEeCCCCcee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPL 89 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~--~GwP~~vfl~p~g~p~ 89 (718)
++.+||+||+...+ .++.=.. . +..+-...+|.++.+.-.+. .+.++|. .+.|..+ + +|+.+
T Consensus 6 y~~~~C~~C~~a~~-~L~~l~~--~-~~~i~~~~idi~~~~~~~~e----l~~~~~~~~~~vP~if-i--~g~~i 69 (85)
T PRK11200 6 FGRPGCPYCVRAKE-LAEKLSE--E-RDDFDYRYVDIHAEGISKAD----LEKTVGKPVETVPQIF-V--DQKHI 69 (85)
T ss_pred EeCCCChhHHHHHH-HHHhhcc--c-ccCCcEEEEECCCChHHHHH----HHHHHCCCCCcCCEEE-E--CCEEE
Confidence 45699999998552 2221000 0 02444556677665422222 2233554 5789865 3 57666
No 198
>PLN02340 endoglucanase
Probab=87.90 E-value=67 Score=38.33 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=63.3
Q ss_pred cCCCCCC---CCCCCChhHHH---HHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHh-----CCCcccCCCc-EEEEec
Q 005023 171 RFGGFGS---APKFPRPVEIQ---MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAK-----GGIHDHVGGG-FHRYSV 238 (718)
Q Consensus 171 ~~GGfg~---apKFP~~~~l~---~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~-----gGi~D~v~GG-F~RYsv 238 (718)
.-|||-. --||=.|+... +++-+......-....+-+.+++.+.--+|-|.+ +.+|-|||-| ..-
T Consensus 74 lsGGwyDAGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk~~~~~~~~~~qVGdg~~DH--- 150 (614)
T PLN02340 74 LVGGYYDAGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIKAHTQPNVLWGQVGDGDSDH--- 150 (614)
T ss_pred CCCCceeCCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCccc---
Confidence 4588844 46877766432 2232222111111112357888888888888876 2233344322 211
Q ss_pred CCCCCCCCCcchHHH---------------HHHHHHHHHHHHHccCC--hH----HHHHHHHHHHHHHH
Q 005023 239 DERWHVPHFEKMLYD---------------QGQLANVYLDAFSLTKD--VF----YSYICRDILDYLRR 286 (718)
Q Consensus 239 D~~W~vPHFEKmLyD---------------nA~ll~~ya~Ay~~t~~--~~----y~~~A~~~~~~l~~ 286 (718)
..|..| |+|-.. =+..+.+++.|+++.++ +. +++.|+++.+|..+
T Consensus 151 -~~W~~P--E~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk~~D~~YA~~lL~~Ak~ly~fA~~ 216 (614)
T PLN02340 151 -YCWERA--EDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFKPYNSSYSDLLLVHAKQLFSFADK 216 (614)
T ss_pred -ccCCCh--hhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 246655 433222 25677889999999874 44 46788888888876
No 199
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.69 E-value=0.98 Score=52.47 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=51.9
Q ss_pred hhHHhhhhhcCCcE----EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 3 RRSFCGGTKTRRTH----FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 3 ~~a~~~Ak~e~K~i----i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
++.+++.++=+||+ |...+|++|...- ..+ .+ .+..|.+-..-.||..+.||+.+. ++..++|+
T Consensus 105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v-~~~--~~-~a~~~~~i~~~~id~~~~~~~~~~--------~~v~~VP~ 172 (517)
T PRK15317 105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVV-QAL--NL-MAVLNPNITHTMIDGALFQDEVEA--------RNIMAVPT 172 (517)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHH-HHH--HH-HHHhCCCceEEEEEchhCHhHHHh--------cCCcccCE
Confidence 34455566656775 5579999998644 333 23 335788777778899999999887 56779999
Q ss_pred EEEeCCCCceeecc
Q 005023 79 SVFLSPDLKPLMGG 92 (718)
Q Consensus 79 ~vfl~p~g~p~~~~ 92 (718)
+++ +|+.++.|
T Consensus 173 ~~i---~~~~~~~g 183 (517)
T PRK15317 173 VFL---NGEEFGQG 183 (517)
T ss_pred EEE---CCcEEEec
Confidence 976 45566543
No 200
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=87.56 E-value=1.1 Score=37.28 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=31.0
Q ss_pred EEEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCC-CCCcEEEeCCCCcee
Q 005023 16 HFLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG-GWPLSVFLSPDLKPL 89 (718)
Q Consensus 16 ii~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~-GwP~~vfl~p~g~p~ 89 (718)
|++.++|+||+... .-++ -.|-.|..|.|+ +.|+.-+. ....+|.. ++|.. |+ +|+.+
T Consensus 4 ly~~~~Cp~C~~ak-~~L~------~~~i~~~~i~i~--~~~~~~~~----~~~~~~~~~~vP~v-~i--~g~~i 62 (75)
T cd03418 4 IYTKPNCPYCVRAK-ALLD------KKGVDYEEIDVD--GDPALREE----MINRSGGRRTVPQI-FI--GDVHI 62 (75)
T ss_pred EEeCCCChHHHHHH-HHHH------HCCCcEEEEECC--CCHHHHHH----HHHHhCCCCccCEE-EE--CCEEE
Confidence 34569999999855 2222 233346555554 43433222 12234554 89965 44 46666
No 201
>PLN02993 lupeol synthase
Probab=87.47 E-value=6.5 Score=47.72 Aligned_cols=83 Identities=11% Similarity=0.176 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEecCC--CCC--CC---CCcchHHH------HHHHHHHHHHHHHccC---Ch
Q 005023 208 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE--RWH--VP---HFEKMLYD------QGQLANVYLDAFSLTK---DV 271 (718)
Q Consensus 208 ~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~--~W~--vP---HFEKmLyD------nA~ll~~ya~Ay~~t~---~~ 271 (718)
+.+.-+...|-.|.. -+|||.-|-.|+ .|. +| ||+..+.| -+..|.+++....... .+
T Consensus 513 ~~l~~av~wlL~mQn------~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ 586 (763)
T PLN02993 513 EQLYDSVNLLLSLQS------ENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTK 586 (763)
T ss_pred HHHHHHHHHHHhhcc------CCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhh
Confidence 455555556666655 369999998766 675 45 45555544 3445555443322111 13
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceee
Q 005023 272 FYSYICRDILDYLRRDMIGPGGEIFS 297 (718)
Q Consensus 272 ~y~~~A~~~~~~l~~~m~~p~Ggf~s 297 (718)
+....++++++||++ .+.++|+||.
T Consensus 587 ei~~~i~rAv~yL~~-~Q~~DGSW~G 611 (763)
T PLN02993 587 EIIKSIEKAVQFIES-KQTPDGSWYG 611 (763)
T ss_pred hHHHHHHHHHHHHHH-hcCCCCCccc
Confidence 345688999999987 5788998874
No 202
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=87.32 E-value=7.9 Score=44.60 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccc
Q 005023 496 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 537 (718)
Q Consensus 496 ~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f 537 (718)
.+++...-||+||+|+-||+..+.+.+.++..++- ..||-
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l~sLe~~~k~--~CGfA 414 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDMLKSLEKYTKV--KCGFA 414 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC--Cccce
Confidence 58999999999999999999999999999887754 34443
No 203
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=87.12 E-value=0.83 Score=51.58 Aligned_cols=61 Identities=7% Similarity=0.105 Sum_probs=37.4
Q ss_pred EEEE--cCCchhhhhhccccCcHHHHHHhhcccEEEE-ecCCCCcchHHHHHHH----HHHhcCCCCCCcEEEeCCCCce
Q 005023 16 HFLI--NTCHWCHVMEVESFEDEGVAKLLNDWFVSIK-VDREERPDVDKVYMTY----VQALYGGGGWPLSVFLSPDLKP 88 (718)
Q Consensus 16 ii~y--~~C~wChvM~~esf~d~~va~~ln~~Fv~vk-vD~ee~pd~d~~y~~~----~q~~~g~~GwP~~vfl~p~g~p 88 (718)
|++| +||+||+... ++|+++=|+.+ ||.++.|+..+.+... .+..+|..+.|..+| +|+.
T Consensus 4 V~vys~~~Cp~C~~aK----------~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi---~~~~ 70 (410)
T PRK12759 4 VRIYTKTNCPFCDLAK----------SWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV---GDVH 70 (410)
T ss_pred EEEEeCCCCHHHHHHH----------HHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE---CCEE
Confidence 4454 8999999855 46666545433 5666777655543331 122367778898866 4555
Q ss_pred e
Q 005023 89 L 89 (718)
Q Consensus 89 ~ 89 (718)
+
T Consensus 71 i 71 (410)
T PRK12759 71 I 71 (410)
T ss_pred E
Confidence 4
No 204
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=87.00 E-value=0.73 Score=42.80 Aligned_cols=65 Identities=8% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHhhhhhcCCcEEE--E---cCCc---hhhhhhccccCcHHHHHHhhcccEEEEecCCC-----CcchHHHHHHHHHHhc
Q 005023 5 SFCGGTKTRRTHFL--I---NTCH---WCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-----RPDVDKVYMTYVQALY 71 (718)
Q Consensus 5 a~~~Ak~e~K~ii~--y---~~C~---wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee-----~pd~d~~y~~~~q~~~ 71 (718)
-+...-++++.+|+ | .||. -|+.+..+..+... .-+.-|||.+. ..++.+. +
T Consensus 10 nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~~~L~~~--------y 74 (116)
T cd03007 10 TFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLNMELGER--------Y 74 (116)
T ss_pred hHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhhHHHHHH--------h
Confidence 35566778888866 3 5777 67777654433221 26667999943 3344443 6
Q ss_pred CCC--CCCcEEEeCC
Q 005023 72 GGG--GWPLSVFLSP 84 (718)
Q Consensus 72 g~~--GwP~~vfl~p 84 (718)
|+. |+||..|+..
T Consensus 75 ~I~~~gyPTl~lF~~ 89 (116)
T cd03007 75 KLDKESYPVIYLFHG 89 (116)
T ss_pred CCCcCCCCEEEEEeC
Confidence 787 9999988774
No 205
>PF13728 TraF: F plasmid transfer operon protein
Probab=86.97 E-value=1.6 Score=44.86 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=44.9
Q ss_pred HHhhhhhcCCcEEEE-cCCchhhhhhccccCcHHHHHHhhcc-cEEEEecCCCCc--chHHHHHH--HHHHhcCCCCCCc
Q 005023 5 SFCGGTKTRRTHFLI-NTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERP--DVDKVYMT--YVQALYGGGGWPL 78 (718)
Q Consensus 5 a~~~Ak~e~K~ii~y-~~C~wChvM~~esf~d~~va~~ln~~-Fv~vkvD~ee~p--d~d~~y~~--~~q~~~g~~GwP~ 78 (718)
+++...++--+++-| +.|..||.|. |-|..+-+++ |-.+-|+.|.+| .+...... ..+ ..|+.-+|+
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~------pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~-~l~v~~~Pa 186 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQA------PILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAK-RLGVKVTPA 186 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHH------HHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHH-HcCCCcCCE
Confidence 344444444455544 9999999987 4555555544 444445665442 11111000 111 257788999
Q ss_pred EEEeCCCCceee
Q 005023 79 SVFLSPDLKPLM 90 (718)
Q Consensus 79 ~vfl~p~g~p~~ 90 (718)
++++.|++.-+.
T Consensus 187 l~Lv~~~~~~~~ 198 (215)
T PF13728_consen 187 LFLVNPNTKKWY 198 (215)
T ss_pred EEEEECCCCeEE
Confidence 999999985443
No 206
>PRK10329 glutaredoxin-like protein; Provisional
Probab=86.90 E-value=0.95 Score=39.06 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=30.0
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEE
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 81 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vf 81 (718)
+..++|++|+.+. +.++. .+=.|.. +|.++.|+....++ . .|....|..++
T Consensus 6 Yt~~~Cp~C~~ak-~~L~~------~gI~~~~--idi~~~~~~~~~~~----~-~g~~~vPvv~i 56 (81)
T PRK10329 6 YTRNDCVQCHATK-RAMES------RGFDFEM--INVDRVPEAAETLR----A-QGFRQLPVVIA 56 (81)
T ss_pred EeCCCCHhHHHHH-HHHHH------CCCceEE--EECCCCHHHHHHHH----H-cCCCCcCEEEE
Confidence 3458999999855 33322 1223443 45556665544322 2 47889999976
No 207
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=86.68 E-value=80 Score=37.91 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=41.1
Q ss_pred CCCcEEEEec-CCCCCCCCCcchHHHHHHHHHHHHHHHHccC---ChHHHHHHHHHHHHHHHhccCCCCceee
Q 005023 229 VGGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK---DVFYSYICRDILDYLRRDMIGPGGEIFS 297 (718)
Q Consensus 229 v~GGF~RYsv-D~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~---~~~y~~~A~~~~~~l~~~m~~p~Ggf~s 297 (718)
-.||+. |+. +..|.+ .-|-|..+.++..+..... ++...+..+++++||++ |++++|||.+
T Consensus 357 ~~GGW~-f~~~~~~~pd------sD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~-~Qn~dGGw~~ 421 (634)
T TIGR03463 357 AKGGWC-FSDGDHGWPV------SDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILS-RQNEDGGFGT 421 (634)
T ss_pred CCCccc-cccCCCCCCc------cccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHH-hcCCCCCEec
Confidence 468877 564 555544 3356767777766544322 22445788999999997 8999999865
No 208
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=86.32 E-value=14 Score=42.77 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=77.0
Q ss_pred CCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC----
Q 005023 409 LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP---- 484 (718)
Q Consensus 409 ~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~---- 484 (718)
.....+.+|....|..+.+.++.+||.... .++....++.++++..+..+...+...+.+-|..
T Consensus 197 ~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DW~~~~~ 264 (509)
T PF05592_consen 197 GGGFGIPDWSLAWIIIPWDYYLYTGDREFL------------EEYYPAMKRYLDYLERRVDDGLDGLPGWGFGDWLAPGN 264 (509)
T ss_dssp SSGGGBHHHHHHHHHHHHHHHHHHT-HHHH------------HHHHHHHHHHHHHHHTTB-TSSB-CCSB--S-SS----
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhCCHHHH------------HHHHHHHHHHHHHHHHhCCccccCCCCCceeecCCccC
Confidence 467788899999999999999999994322 4667788888888887654300111111222221
Q ss_pred ---CCCCCCccc---HHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccc
Q 005023 485 ---SKAPGFLDD---YAFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYF 537 (718)
Q Consensus 485 ---~~~~~~l~D---yA~li~all~LYeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Gg~f 537 (718)
......+-. |+.++..+.++.++.|++ .|.++|.+|-+.+.++|||++.|.+-
T Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~~~g~~~ 327 (509)
T PF05592_consen 265 DGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDPEKGGYA 327 (509)
T ss_dssp TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEETTTTEEC
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCcccCccc
Confidence 111222222 456667788899999985 69999999999999999998877443
No 209
>PTZ00256 glutathione peroxidase; Provisional
Probab=85.93 E-value=2.6 Score=41.99 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=14.9
Q ss_pred CCCCCc---EEEeCCCCceeec
Q 005023 73 GGGWPL---SVFLSPDLKPLMG 91 (718)
Q Consensus 73 ~~GwP~---~vfl~p~g~p~~~ 91 (718)
..+.|. +++++++|++...
T Consensus 142 ~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 142 ARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred CcccCcceEEEEECCCCCEEEE
Confidence 347896 5999999999853
No 210
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.87 E-value=1.1 Score=49.91 Aligned_cols=59 Identities=31% Similarity=0.463 Sum_probs=47.0
Q ss_pred EcCCchhhhhhccccCcHHHHHHhhcccEEE-EecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 19 INTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 19 y~~C~wChvM~~esf~d~~va~~ln~~Fv~v-kvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
.+||..|+.+..+.- .+++.+.. .|.+ .||.++++++-+. +++.|+|+.+++.|..+++
T Consensus 56 apwc~~c~~l~~~~~---~~~~~l~~-~~~~~~vd~~~~~~~~~~--------y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 56 APWCGHCKKLAPTYK---KLAKALKG-KVKIGAVDCDEHKDLCEK--------YGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred CCCCcchhhhchHHH---HHHHHhcC-ceEEEEeCchhhHHHHHh--------cCCccCcEEEEEcCCCcee
Confidence 389999999996544 78888877 5544 6999999888765 6889999999999994444
No 211
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=85.81 E-value=1.4 Score=41.45 Aligned_cols=31 Identities=10% Similarity=0.060 Sum_probs=21.5
Q ss_pred CCcEEEeCCCCceeecc-cccCCCCCCCcccHHHHH
Q 005023 76 WPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTIL 110 (718)
Q Consensus 76 wP~~vfl~p~g~p~~~~-~y~p~~~~~~~~~f~~~L 110 (718)
.|.+++++++|+..+.- ++-+.. .|.+.++|
T Consensus 110 ~~~~~iid~~G~I~~~~~~~~~~~----~~~~~~~~ 141 (143)
T cd03014 110 ARAVFVIDENGKVIYVELVPEITD----EPDYEAAL 141 (143)
T ss_pred ceEEEEEcCCCeEEEEEECCCccc----CCCHHHHh
Confidence 68999999999998754 333322 35666665
No 212
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=85.73 E-value=1.4 Score=51.69 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=52.1
Q ss_pred hHHhhhhhcCCcE----EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcE
Q 005023 4 RSFCGGTKTRRTH----FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 79 (718)
Q Consensus 4 ~a~~~Ak~e~K~i----i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~ 79 (718)
+.+++-++=+||+ |...+|++|....+-. .+++ ..|.+...-.||..+.|++.+. +++.+.|++
T Consensus 466 ~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~---~~~~-~~~~~i~~~~i~~~~~~~~~~~--------~~v~~vP~~ 533 (555)
T TIGR03143 466 ELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAA---QRIA-SLNPNVEAEMIDVSHFPDLKDE--------YGIMSVPAI 533 (555)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHH---HHHH-HhCCCceEEEEECcccHHHHHh--------CCceecCEE
Confidence 4445555556665 3579999999866433 3333 4566677778899999998865 577899999
Q ss_pred EEeCCCCceeecc
Q 005023 80 VFLSPDLKPLMGG 92 (718)
Q Consensus 80 vfl~p~g~p~~~~ 92 (718)
++ ||+.++.|
T Consensus 534 ~i---~~~~~~~G 543 (555)
T TIGR03143 534 VV---DDQQVYFG 543 (555)
T ss_pred EE---CCEEEEee
Confidence 88 67777654
No 213
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=85.68 E-value=0.5 Score=44.06 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=39.1
Q ss_pred hHHhhhhhcCCcEEE----------EcCCchhhhhhccccCcHHHHHHhh-----cccEEEEe-cCCCCcchHHHHHHHH
Q 005023 4 RSFCGGTKTRRTHFL----------INTCHWCHVMEVESFEDEGVAKLLN-----DWFVSIKV-DREERPDVDKVYMTYV 67 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~----------y~~C~wChvM~~esf~d~~va~~ln-----~~Fv~vkv-D~ee~pd~d~~y~~~~ 67 (718)
++++...+.++++++ .+||+.|..-+ |-|.+.++ -+||-|.| ||.+--|-+.-|.+-
T Consensus 10 ~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~ae------p~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~- 82 (119)
T PF06110_consen 10 KLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAE------PVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD- 82 (119)
T ss_dssp HHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHH------HHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred HHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHH------HHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc-
Confidence 445555566778754 38999999855 33443333 34555555 555433444455541
Q ss_pred HHhcCCCCCCcEEEeCCCCc
Q 005023 68 QALYGGGGWPLSVFLSPDLK 87 (718)
Q Consensus 68 q~~~g~~GwP~~vfl~p~g~ 87 (718)
--.+..+.||.+=.+..++
T Consensus 83 -p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 83 -PDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp --CC---SSSEEEECTSS-E
T ss_pred -ceeeeeecceEEEECCCCc
Confidence 0145579999998875533
No 214
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=85.57 E-value=54 Score=39.36 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhc------------ccccCCCCCCC--CC-CCChh----HHHHHHHhhhhhcccCCCCCCHHHHHHHHH
Q 005023 155 NALRLCAEQLSKS------------YDSRFGGFGSA--PK-FPRPV----EIQMMLYHSKKLEDTGKSGEASEGQKMVLF 215 (718)
Q Consensus 155 ~~~~~~~~~l~~~------------~D~~~GGfg~a--pK-FP~~~----~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 215 (718)
..+.++.+.|.+. -+...||||-. +. +|... .|..|+... ..+. .....+.+-+..
T Consensus 336 p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~--~~~~---~~~~~~i~ra~~ 410 (635)
T TIGR01507 336 DALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLR--LPDE---RRRRDAMTKAFR 410 (635)
T ss_pred HHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcC--CCcc---ccchHHHHHHHH
Confidence 3567777777665 23467998875 66 45533 333333321 0000 011244555555
Q ss_pred HHHHHHhCCCcccCCCcEEEEecCCCCC----CCCCc---chH-----HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005023 216 TLQCMAKGGIHDHVGGGFHRYSVDERWH----VPHFE---KML-----YDQGQLANVYLDAFSLTKDVFYSYICRDILDY 283 (718)
Q Consensus 216 TL~~m~~gGi~D~v~GGF~RYsvD~~W~----vPHFE---KmL-----yDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~ 283 (718)
-|-.|.. -+|||.-|..++... +| |. .|+ -+-|..+.+|... +...-...++++++|
T Consensus 411 wLl~~Qn------~dGgw~af~~~~~~~~l~~~~-f~d~~~~~D~~~~d~Ta~~l~al~~~----g~~~~~~~i~rav~~ 479 (635)
T TIGR01507 411 WIAGMQS------SNGGWGAFDVDNTSDLLNHIP-FCDFGAVTDPPTADVTARVLECLGSF----GYDDAWPVIERAVEY 479 (635)
T ss_pred HHHHhcC------CCCCEecccCCcchhHHhcCC-ccccccccCCCCccHHHHHHHHHHHh----CCCchhHHHHHHHHH
Confidence 5555554 579997665544322 34 32 222 1257777777753 221226788999999
Q ss_pred HHHhccCCCCceeee
Q 005023 284 LRRDMIGPGGEIFSA 298 (718)
Q Consensus 284 l~~~m~~p~Ggf~sa 298 (718)
|++ ++.++||+|.+
T Consensus 480 L~~-~Q~~dG~W~g~ 493 (635)
T TIGR01507 480 LKR-EQEPDGSWFGR 493 (635)
T ss_pred HHH-ccCCCCCCccC
Confidence 987 78899998653
No 215
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=85.28 E-value=47 Score=34.00 Aligned_cols=78 Identities=13% Similarity=0.014 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 005023 208 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 287 (718)
Q Consensus 208 ~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~ 287 (718)
....++.++++.+.. . -+.+|||. |..... +-..++-+..+.++..+.... +.......++++||.+.
T Consensus 49 ~~~~~~~~~~~~l~~--~-q~~dG~~~-~~~~~~------~~~~~~T~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 116 (300)
T cd00688 49 KADENIEKGIQRLLS--Y-QLSDGGFS-GWGGND------YPSLWLTAYALKALLLAGDYI--AVDRIDLARALNWLLSL 116 (300)
T ss_pred cchHHHHHHHHHHHh--c-cCCCCCcc-CCCCCC------CcchHhHHHHHHHHHHcCCcc--ccCHHHHHHHHHHHHHc
Confidence 345566666666655 1 25678886 221111 445666777888877655433 45677889999999984
Q ss_pred ccCCCCceeee
Q 005023 288 MIGPGGEIFSA 298 (718)
Q Consensus 288 m~~p~Ggf~sa 298 (718)
+.++|||...
T Consensus 117 -q~~dG~~~~~ 126 (300)
T cd00688 117 -QNEDGGFRED 126 (300)
T ss_pred -cCCCCCeeee
Confidence 6778888653
No 216
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=84.74 E-value=27 Score=38.95 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc-----
Q 005023 455 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL----- 529 (718)
Q Consensus 455 ~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~----- 529 (718)
+.|+++...+.+... .|.+-+....|....-+..|---+++.++-++++.|+|..+++......+.+++.+.
T Consensus 50 ~~a~~~L~~~~~~~~---~G~ipn~~~~~~~~~Y~s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~ 126 (370)
T PF06202_consen 50 EEARNILATFAGTQR---HGLIPNELRDGEEPRYNSVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDF 126 (370)
T ss_pred HHHHHHHHHHHHhhh---cCcccCcccCCCCCCCCCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 455555555544442 578888776665544455677789999999999999999999777665555555442
Q ss_pred ----cccCCccccCCC-------CCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHH
Q 005023 530 ----DREGGGYFNTTG-------EDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVA---GSKSDYYRQNAEHSLAVF 595 (718)
Q Consensus 530 ----D~~~Gg~f~t~~-------~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~---~~~~~~y~e~a~~~l~~~ 595 (718)
|+++| +..... .|...-.++...-+++.-.-|+.+..+|..++.+.. .....+|++.|+++-+.|
T Consensus 127 ~~~~d~~~g-l~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F 205 (370)
T PF06202_consen 127 GIRVDPEDG-LIYSGNGLNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDELAARYREWAERLKESF 205 (370)
T ss_pred ccccccCCC-eeecCCCCCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Confidence 22222 222211 010000011111122333446666666766666654 212357899999888888
Q ss_pred HHHH
Q 005023 596 ETRL 599 (718)
Q Consensus 596 ~~~i 599 (718)
....
T Consensus 206 ~~~F 209 (370)
T PF06202_consen 206 EKRF 209 (370)
T ss_pred HHHH
Confidence 7765
No 217
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=84.70 E-value=1.8 Score=37.59 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=30.8
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCC--CCCCcEEEeCCCCcee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPL 89 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~--~GwP~~vfl~p~g~p~ 89 (718)
+..+||++|+.+.+ .++.-.+. +.++....+|.++.+.... ..+.++|. .+.|..+ + +|+.+
T Consensus 5 ys~~~Cp~C~~ak~-~L~~~~~~---~~~i~~~~idi~~~~~~~~----~l~~~~g~~~~tVP~if-i--~g~~i 68 (86)
T TIGR02183 5 FGRPGCPYCVRAKQ-LAEKLAIE---RADFEFRYIDIHAEGISKA----DLEKTVGKPVETVPQIF-V--DEKHV 68 (86)
T ss_pred EeCCCCccHHHHHH-HHHHhCcc---cCCCcEEEEECCCCHHHHH----HHHHHhCCCCCCcCeEE-E--CCEEe
Confidence 44589999998663 22211110 0123344455554321122 23345665 6789874 4 45555
No 218
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=84.69 E-value=97 Score=37.10 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHHHHhccCCCCceee
Q 005023 269 KDVFYSYICRDILDYLRRDMIGPGGEIFS 297 (718)
Q Consensus 269 ~~~~y~~~A~~~~~~l~~~m~~p~Ggf~s 297 (718)
.++...+..+++++||.+ |++++|||-+
T Consensus 382 ~~~~~~~~l~~a~~~Ll~-~Qn~dGGw~a 409 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILG-MQSSNGGFAA 409 (621)
T ss_pred cccccHHHHHHHHHHHHH-HcCCCCCEee
Confidence 356667888999999998 8899999854
No 219
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=84.69 E-value=14 Score=41.19 Aligned_cols=131 Identities=13% Similarity=0.090 Sum_probs=79.4
Q ss_pred HHHHHHHHHhccccCC--CeEEEeec---CCCC---CCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005023 458 ESAASFIRRHLYDEQT--HRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 529 (718)
Q Consensus 458 ~~~~~~l~~~~~d~~~--g~l~~~~~---~g~~---~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~ 529 (718)
.++..|.+.|+...+. +.+.+.|. +|.. +...-.|.=-+++.||+...+..+++.|++.|..|++.|.++-.
T Consensus 74 d~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev 153 (376)
T PRK11097 74 DKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEV 153 (376)
T ss_pred HHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcc
Confidence 4677788888876433 33444442 2321 22222344468899999999999999999999999999998766
Q ss_pred cccCC-ccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005023 530 DREGG-GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 597 (718)
Q Consensus 530 D~~~G-g~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~ 597 (718)
.+..| +....+.+.. ...+..-...||= .+-..+-.++..+++ ..|.+.++...+.+..
T Consensus 154 ~~~~g~g~~LlPG~~g----F~~~~~~~~NPSY--~~p~~~~~fa~~~~~---~~W~~l~~~~~~lL~~ 213 (376)
T PRK11097 154 VTVPGLGSMLLPGPVG----FADDGSWRLNPSY--LPPQLLRRFARFLPG---GPWAALAATNARLLLE 213 (376)
T ss_pred cccCCCceeecccccc----ccCCCCCeECccc--ccHHHHHHHHHhcCC---chHHHHHHHHHHHHHH
Confidence 54444 3433332210 0000000012332 344566677888774 5788888777777654
No 220
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=84.60 E-value=6.1 Score=44.02 Aligned_cols=123 Identities=14% Similarity=0.143 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCc
Q 005023 456 VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG 535 (718)
Q Consensus 456 ~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg 535 (718)
..+++-+||.+++.-..++ .. .+.|--.-++-||+..|..+|+.-||+.|.+|.+.+..-|-.+ ++-
T Consensus 151 e~~ea~~Wv~~~L~f~~~~---------~V---NlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sp-s~I 217 (546)
T KOG2431|consen 151 EFEEAREWVEKKLHFEKDR---------DV---NLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSP-SPI 217 (546)
T ss_pred HHHHHHHHHHhhccccccc---------ce---ehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCC-CCC
Confidence 4455667777666321111 11 2334455678899999999999999999999999999999443 333
Q ss_pred cccCCCCCCccccccccCCCCCCCChHHHHH---HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005023 536 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV---INLVRLASIVAGSKSDYYRQNAEHSLAVFETR 598 (718)
Q Consensus 536 ~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a---~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~ 598 (718)
-|+.-.-+...-..++-. --|..|... ..+--|+++||+ +.|.+.|+++.+.+...
T Consensus 218 PysdVnL~~~~A~~p~~~----~~SStaEvttiQlEfr~Ls~ltgd---~kY~~~a~kv~ehih~~ 276 (546)
T KOG2431|consen 218 PYSDVNLGTGTAHPPRWT----GDSSTAEVTTIQLEFRYLSRLTGD---PKYEELAEKVTEHIHGL 276 (546)
T ss_pred CcceeecCCCcccCCCCC----CccchhhheeeeeeHHHHHhhcCC---chHHHHHHHHHHHHhcc
Confidence 232211111101111111 112222211 236778999996 78999999998876543
No 221
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=84.58 E-value=1.4 Score=41.10 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=12.7
Q ss_pred hhcCCcEEE---EcCCch-hhhhh
Q 005023 10 TKTRRTHFL---INTCHW-CHVME 29 (718)
Q Consensus 10 k~e~K~ii~---y~~C~w-ChvM~ 29 (718)
.-.+|+++. ++||.. |...-
T Consensus 19 ~~~gk~~vl~f~~~~C~~~C~~~l 42 (142)
T cd02968 19 DLKGKPVLVYFGYTHCPDVCPTTL 42 (142)
T ss_pred HhCCCEEEEEEEcCCCcccCHHHH
Confidence 335777755 478886 86543
No 222
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=84.35 E-value=2.2 Score=44.84 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=47.7
Q ss_pred hHHhhhhhcCCcEEEE-cCCchhhhhhccccCcHHHHHHhhccc---EEEEecCCCCcchHHHHHHHHHH-hcCCCCCCc
Q 005023 4 RSFCGGTKTRRTHFLI-NTCHWCHVMEVESFEDEGVAKLLNDWF---VSIKVDREERPDVDKVYMTYVQA-LYGGGGWPL 78 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~y-~~C~wChvM~~esf~d~~va~~ln~~F---v~vkvD~ee~pd~d~~y~~~~q~-~~g~~GwP~ 78 (718)
++++...++..+++-| +.|..||.|. |-|..+-+++= ++|-+|---.|.+...-...-|+ -.|+.-+|.
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~a------Pil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PA 209 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLA------QVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPA 209 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccce
Confidence 4566666777778776 8999999987 56666666553 33444532223321110000011 145567999
Q ss_pred EEEeCCCCcee
Q 005023 79 SVFLSPDLKPL 89 (718)
Q Consensus 79 ~vfl~p~g~p~ 89 (718)
+++++|+.+-+
T Consensus 210 l~Lv~~~t~~~ 220 (248)
T PRK13703 210 LMLVDPKSGSV 220 (248)
T ss_pred EEEEECCCCcE
Confidence 99999986444
No 223
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=84.11 E-value=20 Score=37.43 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=46.0
Q ss_pred cccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005023 226 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 297 (718)
Q Consensus 226 ~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~s 297 (718)
|-+-+|||.= | -.+-+=-..--|..+..|++|.+...-+ ..+..++++||... +.++|.|-.
T Consensus 9 y~~~DGsfs~------f-~~~~~~s~WLTAfv~k~f~~a~~~i~vd--~~~i~~a~~wL~~~-Q~~dG~F~e 70 (246)
T PF07678_consen 9 YRRSDGSFSA------F-SSDSPSSTWLTAFVVKVFSQAKKYIFVD--ENVICRAVKWLISQ-QQPDGSFEE 70 (246)
T ss_dssp TB-TTSSBBS------S-TTTSSBBHHHHHHHHHHHHHHTTTS-CE--HHHHHHHHHHHHHH-BETTSEB--
T ss_pred CCCCCCCeec------c-ccCCcccHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHh-hcCCCcccc
Confidence 4466888873 4 3444667888999999999998884333 57789999999998 788898843
No 224
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=83.87 E-value=2.7 Score=43.73 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=22.8
Q ss_pred cCCCCCCcEEEeCCCCceeecccccCCCCCCCcccHHHHHHH
Q 005023 71 YGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRK 112 (718)
Q Consensus 71 ~g~~GwP~~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~ 112 (718)
.|..|+|+.|| +||+.+ .+|.|++ .|.++|+.
T Consensus 198 lgi~gTPtiv~--~~G~~~--~G~~~~~------~L~~~l~~ 229 (232)
T PRK10877 198 FGVQGTPAIVL--SNGTLV--PGYQGPK------EMKAFLDE 229 (232)
T ss_pred cCCccccEEEE--cCCeEe--eCCCCHH------HHHHHHHH
Confidence 47899998885 578887 5677765 46666654
No 225
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=83.09 E-value=4.3 Score=42.95 Aligned_cols=79 Identities=10% Similarity=0.192 Sum_probs=47.6
Q ss_pred hHHhhhhhcCCcEEEE-cCCchhhhhhccccCcHHHHHHhhcc-cEEEEecCCCC--cchHHHHHH--HHHHhcCCCCCC
Q 005023 4 RSFCGGTKTRRTHFLI-NTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREER--PDVDKVYMT--YVQALYGGGGWP 77 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~y-~~C~wChvM~~esf~d~~va~~ln~~-Fv~vkvD~ee~--pd~d~~y~~--~~q~~~g~~GwP 77 (718)
++++...++.-+|+-| +.|..||.|. |-|..+-+++ |-.+-|+.+.. |.+...-.. .++. .|+.-.|
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~a------pil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~-l~v~~~P 215 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMA------PVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQH-LGVKYFP 215 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHh-cCCccCc
Confidence 4566666666677666 8899999987 5565555554 33333555444 443221111 1112 3666799
Q ss_pred cEEEeCCCCcee
Q 005023 78 LSVFLSPDLKPL 89 (718)
Q Consensus 78 ~~vfl~p~g~p~ 89 (718)
++++++|+.+-+
T Consensus 216 al~Lv~~~t~~~ 227 (256)
T TIGR02739 216 ALYLVNPKSQKM 227 (256)
T ss_pred eEEEEECCCCcE
Confidence 999999995544
No 226
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=82.90 E-value=89 Score=35.26 Aligned_cols=298 Identities=17% Similarity=0.198 Sum_probs=161.1
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCC-----cccccCccccc
Q 005023 239 DERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDAD-----SAETEGATRKK 313 (718)
Q Consensus 239 D~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~DAD-----s~~~~~~~~~~ 313 (718)
|.+-.|--||-.+- ++-.++-||-++|+..|++.|.+.-+=|+.-+.+|.+==||...-+ +..-.+++-.-
T Consensus 166 ~~~~~VNlFEtTIR----vLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SSta 241 (546)
T KOG2431|consen 166 EKDRDVNLFETTIR----VLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTA 241 (546)
T ss_pred ccccceehhhhhHH----HHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchh
Confidence 44556777888776 7777888999999999999999999999988888877666644322 11101111111
Q ss_pred CCceEeechHHHHHHhchh--H----HHHHHHhcccCC---CCcCCCCCCCC-CCccCCcceeeccCCchHHHHhcCCCH
Q 005023 314 EGAFYVWTSKEVEDILGEH--A----ILFKEHYYLKPT---GNCDLSRMSDP-HNEFKGKNVLIELNDSSASASKLGMPL 383 (718)
Q Consensus 314 EG~yY~Wt~~Ei~~~L~~~--~----~~~~~~~~v~~~---Gn~~~~~~~dp-~~~~eg~nvL~~~~~~~~~a~~~g~~~ 383 (718)
|=.--.-...++..+.|+. . .+....+++... |-+.. ..+| .|.|.+.||-.....++ +-+
T Consensus 242 EvttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi--~in~~tG~F~~~tI~lGaRgDS-yYE------ 312 (546)
T KOG2431|consen 242 EVTTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPI--FINPNTGLFVGSTITLGARGDS-YYE------ 312 (546)
T ss_pred hheeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeE--EEcCCCCccccceEEeccccch-HHH------
Confidence 2111122234445555532 1 233444555433 32211 2233 47788877654443322 110
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 005023 384 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 463 (718)
Q Consensus 384 ~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~ 463 (718)
=. .++.|..-++- ..+. +.|.++-+-.-..
T Consensus 313 ----YL---lKQwlQtg~~~--------------------------~~l~-----------------~dy~~am~gv~~~ 342 (546)
T KOG2431|consen 313 ----YL---LKQWLQTGKSL--------------------------TYLR-----------------DDYIEAMEGVRKH 342 (546)
T ss_pred ----HH---HHHHHHcccch--------------------------hHHH-----------------HHHHHHHHHHHHH
Confidence 00 12222210000 0011 2344444444444
Q ss_pred HHHhccccCCCeEEEe-ecCCCCCCCCCcccHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHhcccccCCc----
Q 005023 464 IRRHLYDEQTHRLQHS-FRNGPSKAPGFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQNTQDELFLDREGGG---- 535 (718)
Q Consensus 464 l~~~~~d~~~g~l~~~-~~~g~~~~~~~l~DyA~li~all~LYeaTg---d~~~L~~A~~L~~~~~~~F~D~~~Gg---- 535 (718)
|.++- .| ++..|-. -..|.. ...-.|--..++-|.|.+-..-| +++.++.|++|.+.+-+-+-...+|-
T Consensus 343 Llr~S-~P-~~~~fiGEl~~G~~-fsPKMDHLVCFlpGtL~lG~~~Gl~~~~~hl~lA~~l~~TCyqMY~~~~TGLaPEI 419 (546)
T KOG2431|consen 343 LLRQS-KP-NKLWFIGELPHGLQ-FSPKMDHLVCFLPGTLALGSTNGLPASEEHLELAQELMETCYQMYRQNPTGLAPEI 419 (546)
T ss_pred HHhcC-CC-cceEEEEecccccc-cCcccceEEEeecchhhhccccCCCcchHHHHHHHHHHHHHHHHHccCcCCCCceE
Confidence 44332 22 2322222 233331 12223333445566666655433 55789999999999988775555552
Q ss_pred -cccCCCC--CCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh-hHHHHH
Q 005023 536 -YFNTTGE--DPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM-AVPLMC 610 (718)
Q Consensus 536 -~f~t~~~--~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i~~~p~-~~~~~l 610 (718)
+|..... ..++.+++.+.+---.| ..+..|.-|+++|++ ..|++-.-+++++|.... +.|. +++++=
T Consensus 420 v~Fn~~~~~~~~DiyvKp~D~HnLlRP----EtVESlfylYriT~D---~kYqewGW~if~sfekyt-rv~~ggytSi~ 490 (546)
T KOG2431|consen 420 VHFNLYPQPGKNDIYVKPLDRHNLLRP----ETVESLFYLYRITGD---RKYQEWGWEIFQSFEKYT-RVPSGGYTSID 490 (546)
T ss_pred EEEeccCCCccCceeeccchhhcccCh----HHHhhhheeeEecCC---chHHHHhHHHHHHHHHhc-ccCCCCccchh
Confidence 6665432 34555555443221112 467789999999996 789999999999987654 5555 666643
No 227
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.75 E-value=2.5 Score=49.04 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=50.7
Q ss_pred hhHHhhhhhcCCcE----EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 3 RRSFCGGTKTRRTH----FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 3 ~~a~~~Ak~e~K~i----i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
++.+++.++=.||+ |...+|++|...- ..+ .-.+..|.+-..-.+|-.+.||+... ++..++|.
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v-~~~---~~~a~~~p~i~~~~id~~~~~~~~~~--------~~v~~VP~ 173 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVV-QAL---NQMALLNPNISHTMIDGALFQDEVEA--------LGIQGVPA 173 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHH-HHH---HHHHHhCCCceEEEEEchhCHHHHHh--------cCCcccCE
Confidence 44555566556664 5679999998633 233 23446677666667899999998876 56679999
Q ss_pred EEEeCCCCceeecc
Q 005023 79 SVFLSPDLKPLMGG 92 (718)
Q Consensus 79 ~vfl~p~g~p~~~~ 92 (718)
+++ +|+.++.|
T Consensus 174 ~~i---~~~~~~~g 184 (515)
T TIGR03140 174 VFL---NGEEFHNG 184 (515)
T ss_pred EEE---CCcEEEec
Confidence 976 45566543
No 228
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=82.56 E-value=6.4 Score=38.58 Aligned_cols=18 Identities=6% Similarity=-0.136 Sum_probs=15.1
Q ss_pred CCCcEEEeCCCCceeecc
Q 005023 75 GWPLSVFLSPDLKPLMGG 92 (718)
Q Consensus 75 GwP~~vfl~p~g~p~~~~ 92 (718)
++|++++++++|+..+..
T Consensus 119 ~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 119 ALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred eeeEEEEECCCCeEEEEE
Confidence 578999999999988654
No 229
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=82.52 E-value=1.5 Score=47.06 Aligned_cols=47 Identities=23% Similarity=0.197 Sum_probs=35.0
Q ss_pred chHHHHH---HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005023 249 KMLYDQG---QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 296 (718)
Q Consensus 249 KmLyDnA---~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~ 296 (718)
+-.+||. .-|..++++|+.|+|+.|+..+.+.++||+. .+-|+|||-
T Consensus 33 ~~TiDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWP 82 (289)
T PF09492_consen 33 NSTIDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWP 82 (289)
T ss_dssp SCE-GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--B
T ss_pred cCcccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence 4455643 4577789999999999999999999999996 778899983
No 230
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=82.18 E-value=2.1 Score=38.82 Aligned_cols=16 Identities=19% Similarity=0.601 Sum_probs=11.5
Q ss_pred cCCcEEEE---c-CCchhhh
Q 005023 12 TRRTHFLI---N-TCHWCHV 27 (718)
Q Consensus 12 e~K~ii~y---~-~C~wChv 27 (718)
.+|++|++ + ||+.|..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~ 43 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQA 43 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHH
T ss_pred CCCcEEEEEeCccCcccccc
Confidence 56887663 4 8999975
No 231
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=82.15 E-value=3.2 Score=34.34 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=32.0
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
+..++|++|+... +-++ -.+-.|..+ |.++.++.. ..+.++|....|.. |++ |+.+
T Consensus 6 ys~~~Cp~C~~ak-~~L~------~~~i~~~~~--~v~~~~~~~-----~~~~~~g~~~vP~i-fi~--g~~i 61 (72)
T cd03029 6 FTKPGCPFCARAK-AALQ------ENGISYEEI--PLGKDITGR-----SLRAVTGAMTVPQV-FID--GELI 61 (72)
T ss_pred EECCCCHHHHHHH-HHHH------HcCCCcEEE--ECCCChhHH-----HHHHHhCCCCcCeE-EEC--CEEE
Confidence 4459999999863 2222 233345544 444444322 23445788889986 554 5555
No 232
>PRK13190 putative peroxiredoxin; Provisional
Probab=81.95 E-value=3.8 Score=41.61 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=24.4
Q ss_pred CCCcEEEeCCCCceeecccccCCCCCCCcccHHHHHHHHH
Q 005023 75 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 114 (718)
Q Consensus 75 GwP~~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~ 114 (718)
+.|.++|++|+|+..+...|-.+. | ..+-++|+.|.
T Consensus 116 ~~p~~fiId~~G~I~~~~~~~~~~---g-r~~~ellr~l~ 151 (202)
T PRK13190 116 TVRGVFIIDPNQIVRWMIYYPAET---G-RNIDEIIRITK 151 (202)
T ss_pred EEeEEEEECCCCEEEEEEEeCCCC---C-CCHHHHHHHHH
Confidence 489999999999988765443332 2 25666666554
No 233
>PLN02308 endoglucanase
Probab=81.53 E-value=1.1e+02 Score=35.51 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=65.0
Q ss_pred cCCCCCC---CCCCCChhHHH--HHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcEEEEecC------
Q 005023 171 RFGGFGS---APKFPRPVEIQ--MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD------ 239 (718)
Q Consensus 171 ~~GGfg~---apKFP~~~~l~--~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD------ 239 (718)
..|||.. --||-.|+... +|........+.- ..+.+.+++.+.--++-|.+ .++. .|+||. .|.
T Consensus 72 lsGGWyDAGD~~Ky~~p~a~s~t~L~w~~~e~~~~~-~~e~~~~ldeikw~~D~llk--m~~~-~~~vy~-qVg~~~~dh 146 (492)
T PLN02308 72 LTGGYYDAGDNVKFGFPMAFTTTLMSWSIIDFGRTM-GPELENAVKAVKWATDYLMK--ATAI-PNVVYV-QVGDAYSDH 146 (492)
T ss_pred CCCCceeCCCcCeecCchHHHHHHHHHHHHHhHhhh-cchhHHHHHHHHHHHHHHHH--hcCC-CCeEEE-EecCCCCCc
Confidence 5688844 46887766443 2222111111110 01235778888888888876 4443 456653 443
Q ss_pred CCCCCCCCcch---HH----------HHHHHHHHHHHHHHccC--ChHH----HHHHHHHHHHHHH
Q 005023 240 ERWHVPHFEKM---LY----------DQGQLANVYLDAFSLTK--DVFY----SYICRDILDYLRR 286 (718)
Q Consensus 240 ~~W~vPHFEKm---Ly----------DnA~ll~~ya~Ay~~t~--~~~y----~~~A~~~~~~l~~ 286 (718)
..|..|+-.++ +| -=+..+.+++.|+++.+ |+.| ++.|++..+|..+
T Consensus 147 ~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~~~D~~YA~~lL~~Ak~ly~fa~~ 212 (492)
T PLN02308 147 NCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFRKRDPAYSRLLLDRAVRVFAFADK 212 (492)
T ss_pred cCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 34666654321 11 23577888999999987 5555 5677888888877
No 234
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=80.74 E-value=69 Score=34.56 Aligned_cols=118 Identities=12% Similarity=0.046 Sum_probs=67.5
Q ss_pred HhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE
Q 005023 398 FDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ 477 (718)
Q Consensus 398 ~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~ 477 (718)
......+...-+|+.-- .--|.-|+++++..++ +.|.+++.++++||+...+. +|+.-
T Consensus 30 ~~~~~~~~~~TiDN~aT----~~e~~fLa~~y~~t~d----------------~~y~~A~~rgld~LL~aQyp--nGGWP 87 (290)
T TIGR02474 30 KNGGGGNESGTIDNGAT----VTEIRYLAQVYQQEKN----------------AKYRDAARKGIEYLLKAQYP--NGGWP 87 (290)
T ss_pred ccccCCCCcccccCccH----HHHHHHHHHHHHhcCc----------------hhHHHHHHHHHHHHHhhhCC--CCCcC
Confidence 33333356667787722 2346788999998887 78999999999999988775 45544
Q ss_pred EeecCCC-CCCCCCcccH--HHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHhccccc--CCccc
Q 005023 478 HSFRNGP-SKAPGFLDDY--AFLISGLLDLYEFGS-----GTKWLVWAIELQNTQDELFLDRE--GGGYF 537 (718)
Q Consensus 478 ~~~~~g~-~~~~~~l~Dy--A~li~all~LYeaTg-----d~~~L~~A~~L~~~~~~~F~D~~--~Gg~f 537 (718)
..+.... -...-+.+|. ..++..|.++++... +...+.++..-.+..++.+...+ .||++
T Consensus 88 Qf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~ 157 (290)
T TIGR02474 88 QFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKL 157 (290)
T ss_pred cccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcC
Confidence 3332211 1111223344 357788888776433 22233444444444444433332 34444
No 235
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=80.28 E-value=35 Score=40.87 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC---------CCCC
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---------KAPG 489 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~---------~~~~ 489 (718)
++++.||++++.. + +++-..-+++.+||.+.......|.....+++..+ ....
T Consensus 310 ala~~AL~e~g~~--~----------------~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~p 371 (634)
T TIGR03463 310 AFAVQALAATPET--A----------------GRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWP 371 (634)
T ss_pred HHHHHHHHHcCCC--c----------------hhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCC
Confidence 7889999886532 1 34556778899999887653221211111222111 1224
Q ss_pred CcccHHHHHHHHHHHHHHcC------ChHHHHHHHHHHHHHHHhcccccCCcccc-CCCCCCcccc--ccc-----cCCC
Q 005023 490 FLDDYAFLISGLLDLYEFGS------GTKWLVWAIELQNTQDELFLDREGGGYFN-TTGEDPSVLL--RVK-----EDHD 555 (718)
Q Consensus 490 ~l~DyA~li~all~LYeaTg------d~~~L~~A~~L~~~~~~~F~D~~~Gg~f~-t~~~~~~l~~--r~k-----~~~D 555 (718)
..||-|..+.|++.+..... ..+.+..|.+.+..+. .+ +|||.. ....+...+. .+. -..|
T Consensus 372 dsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Q----n~-dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d 446 (634)
T TIGR03463 372 VSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQ----NE-DGGFGTYERQRGPRVLELLNPSEMFSTCMTD 446 (634)
T ss_pred ccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhc----CC-CCCEeccCCCCcHHHHhcCChHHhhcccccC
Confidence 56889999999998865322 2345566666554443 22 466552 2211111100 000 1225
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005023 556 GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 598 (718)
Q Consensus 556 ~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~ 598 (718)
...+..++.++.+|..+.........++..+..++.++.+...
T Consensus 447 ~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 447 VSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred CCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 5667777777777766654322110123344455555555443
No 236
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=80.10 E-value=1.8 Score=46.08 Aligned_cols=61 Identities=26% Similarity=0.354 Sum_probs=44.7
Q ss_pred EcCCchhhhhhccccCcHHHHHHhhcccEEEEe---cCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 19 INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 19 y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkv---D~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
..||..|++++. . =.+|--.|..-=.|||| |...-|.|... .|+.|+||..|+.-+.-.=|
T Consensus 52 APWC~HCKkLeP-i--WdeVG~elkdig~PikVGKlDaT~f~aiAne--------fgiqGYPTIk~~kgd~a~dY 115 (468)
T KOG4277|consen 52 APWCAHCKKLEP-I--WDEVGHELKDIGLPIKVGKLDATRFPAIANE--------FGIQGYPTIKFFKGDHAIDY 115 (468)
T ss_pred chhhhhcccccc-h--hHHhCcchhhcCCceeecccccccchhhHhh--------hccCCCceEEEecCCeeeec
Confidence 389999999885 2 23566666666678876 77777877776 68899999999986643333
No 237
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=79.71 E-value=10 Score=37.84 Aligned_cols=34 Identities=12% Similarity=-0.053 Sum_probs=22.8
Q ss_pred CCCcEEEeCCCCceeecccc-cCCCCCCCcccHHHHHHHH
Q 005023 75 GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKV 113 (718)
Q Consensus 75 GwP~~vfl~p~g~p~~~~~y-~p~~~~~~~~~f~~~L~~i 113 (718)
+.|.++|++++|++.+.... .++. ..+.++|+.|
T Consensus 118 ~~p~tfiID~~G~I~~~~~~~~~~~-----~~~~~ll~~l 152 (187)
T TIGR03137 118 ADRGTFVIDPEGVIQAVEITDNGIG-----RDASELLRKI 152 (187)
T ss_pred eeeEEEEECCCCEEEEEEEeCCCCC-----CCHHHHHHHH
Confidence 35999999999999875432 2222 2566666655
No 238
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=79.58 E-value=11 Score=37.95 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=23.6
Q ss_pred CCC--CcEEEeCCCCceeecccccCCCCCCCcccHHHHHHHH
Q 005023 74 GGW--PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 113 (718)
Q Consensus 74 ~Gw--P~~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i 113 (718)
.|+ |.+++++|+|++.+..-+-.+. | +...++|+.+
T Consensus 115 ~g~~~r~tfIID~~G~I~~~~~~~~~~---~-~~~~eil~~l 152 (187)
T PRK10382 115 EGLADRATFVVDPQGIIQAIEVTAEGI---G-RDASDLLRKI 152 (187)
T ss_pred CCceeeEEEEECCCCEEEEEEEeCCCC---C-CCHHHHHHHH
Confidence 467 9999999999998764332221 1 2566666544
No 239
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=78.78 E-value=7.3 Score=38.05 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=50.5
Q ss_pred hcCCcEEEE---cCCchhhhhhccccCcHHHHHHhhcc---cEEEEecCCCCc-chHHHHH----------------HHH
Q 005023 11 KTRRTHFLI---NTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERP-DVDKVYM----------------TYV 67 (718)
Q Consensus 11 ~e~K~ii~y---~~C~wChvM~~esf~d~~va~~ln~~---Fv~vkvD~ee~p-d~d~~y~----------------~~~ 67 (718)
=+||.|..| .||..|+..- =.=.++=+.+.++ |-.|-|++|..- +.+..|. +-+
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FT---P~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l 107 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFT---PILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKL 107 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCC---chHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHH
Confidence 357777555 7888888643 2334455556666 888888766543 3333322 112
Q ss_pred HHhcCCCCCCcEEEeCCCCceee
Q 005023 68 QALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 68 q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
+..+++.|.|..+++.|||+.+.
T Consensus 108 ~~ky~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 108 SEKYEVKGIPALVILKPDGTVVT 130 (157)
T ss_pred HHhcccCcCceeEEecCCCCEeh
Confidence 33578899999999999999884
No 240
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=78.52 E-value=13 Score=44.52 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCC---------CC-C------------C----hhHHHHHHHhhhhhcccCCCCCC
Q 005023 153 PQNALRLCAEQLSKSYDSRFGGFGSAP---------KF-P------------R----PVEIQMMLYHSKKLEDTGKSGEA 206 (718)
Q Consensus 153 ~~~~~~~~~~~l~~~~D~~~GGfg~ap---------KF-P------------~----~~~l~~Ll~~~~~~~~~~~~~~~ 206 (718)
..+.+.++++.|.+.-+ ..|||+.-. ++ | . ...+..|.....+ .
T Consensus 386 ~~~~l~~a~~~Ll~~Qn-~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r---------~ 455 (621)
T TIGR01787 386 KRDRLRDAVNWILGMQS-SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHR---------A 455 (621)
T ss_pred cHHHHHHHHHHHHHHcC-CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCc---------c
Confidence 44667778887777655 459998421 11 2 1 2334455433211 1
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 005023 207 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 286 (718)
Q Consensus 207 ~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~ 286 (718)
+...+.+.+.++-+.. . -+-+|+|+. .|.+.+ .|..+..+.++..+.+...+. ..++++++||++
T Consensus 456 ~~~~~~i~rAl~~L~~--~-Q~~DGsw~g-----~wg~~y----~YgT~~al~aL~~~G~~~~~~---~~i~rA~~~L~~ 520 (621)
T TIGR01787 456 DEIRNVLERALEYLRR--E-QRADGSWFG-----RWGVNY----TYGTGFVLSALAAAGRTYRNC---PEVQKACDWLLS 520 (621)
T ss_pred HhHHHHHHHHHHHHHH--h-cCCCCCCcc-----cCCCCC----chhHHHHHHHHHHhCCcccCC---HHHHHHHHHHHh
Confidence 2233455566665554 2 234677752 576653 577777888887764433332 778899999998
Q ss_pred hccCCCCcee
Q 005023 287 DMIGPGGEIF 296 (718)
Q Consensus 287 ~m~~p~Ggf~ 296 (718)
. +.++||+.
T Consensus 521 ~-Q~~DGGWg 529 (621)
T TIGR01787 521 R-QMPDGGWG 529 (621)
T ss_pred h-cCCCCCCC
Confidence 5 67889884
No 241
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=77.75 E-value=2.4 Score=40.62 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=12.1
Q ss_pred cEEEeCCCCceeec
Q 005023 78 LSVFLSPDLKPLMG 91 (718)
Q Consensus 78 ~~vfl~p~g~p~~~ 91 (718)
+++|++++|+++..
T Consensus 125 ttflId~~G~i~~~ 138 (152)
T cd00340 125 TKFLVDRDGEVVKR 138 (152)
T ss_pred EEEEECCCCcEEEE
Confidence 79999999999853
No 242
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=77.65 E-value=4.7 Score=42.45 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC-CCCCCCCCcccHH
Q 005023 417 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYA 495 (718)
Q Consensus 417 WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~-g~~~~~~~l~DyA 495 (718)
|.+-.+.-|..|+.-... +.-++.+.+...-+. .++ |......+-+|-+
T Consensus 47 WqAHlldclvDA~lR~~~----------------~Arr~ri~~T~r~~~--------------vRN~G~l~shdyYDDma 96 (377)
T COG4833 47 WQAHLLDCLVDAQLRDPQ----------------PARRARINRTVRSHR--------------VRNFGWLNSHDYYDDMA 96 (377)
T ss_pred HHHHHHHHHHHHHhcCCc----------------HhHHHHHHHHHhhhh--------------ccccccccchhhhhhHH
Confidence 455567777778765443 344556665543221 222 3344567889999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHH-HHHHHHHHhcccccCCcccc
Q 005023 496 FLISGLLDLYEFGSGTKWLVWAI-ELQNTQDELFLDREGGGYFN 538 (718)
Q Consensus 496 ~li~all~LYeaTgd~~~L~~A~-~L~~~~~~~F~D~~~Gg~f~ 538 (718)
+++.|+-.+|.++| .++..|. .+.+.+.+-..|..+||+-+
T Consensus 97 WlALAl~Ra~Kv~g--vr~~~alp~l~~~~v~Gw~D~~gGg~pW 138 (377)
T COG4833 97 WLALALERADKVAG--VRRRRALPKLTNQFVEGWVDEDGGGIPW 138 (377)
T ss_pred HHHHHHHhhhcccc--eeccccchhHHHhhhhccccccCCcccc
Confidence 99999999999999 7777776 55666767667777777544
No 243
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=77.50 E-value=28 Score=36.89 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCC-CChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCC
Q 005023 153 PQNALRLCAEQLSKSYDSRFGGFGSAPKF-PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 231 (718)
Q Consensus 153 ~~~~~~~~~~~l~~~~D~~~GGfg~apKF-P~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~G 231 (718)
+....+++++.+.+..+...|||+..|-- |......+.+.......+. .. ....++-+...+... -+-.|
T Consensus 45 ~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~--~~-~~~~~~~~~~~l~~~------q~~dG 115 (286)
T cd02890 45 DDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD--AL-SRIDREKIYKFLSSL------QNPDG 115 (286)
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc--cc-chhhHHHHHHHHHHh------cCCCC
Confidence 44567888888888773456999997532 2222111221111111100 00 111122222223322 23468
Q ss_pred cEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005023 232 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 297 (718)
Q Consensus 232 GF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~s 297 (718)
||. ++. |...|.-=. | ..+.+..+.+... ....+++++||.+ .+.++|||-.
T Consensus 116 gf~-~~~---~~~~d~~~t-y-------~al~~l~ll~~~~-~~~~~~~~~~l~~-~Q~~dGGf~~ 167 (286)
T cd02890 116 SFR-GDL---GGEVDTRFV-Y-------CALSILSLLNILT-DIDKEKLIDYILS-CQNYDGGFGG 167 (286)
T ss_pred Ccc-cCC---CCCchHHHH-H-------HHHHHHHHhCCch-hhhHHHHHHHHHH-hCCCCCCcCC
Confidence 884 553 433333221 1 1222222233322 4567889999997 5789999843
No 244
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=77.38 E-value=2.3 Score=48.73 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=46.5
Q ss_pred hhhhcCCcEEE--E-cCCchhhhhhccccCcHHHHHHhhcc---cEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEE
Q 005023 8 GGTKTRRTHFL--I-NTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 81 (718)
Q Consensus 8 ~Ak~e~K~ii~--y-~~C~wChvM~~esf~d~~va~~ln~~---Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vf 81 (718)
.....|..+++ | .||..|+.|..| =.+-|..|-++ =--.|||.++.-++... +++.|+||.-|
T Consensus 37 ~~i~~~~~vlVeFYAPWCghck~LaPe---y~kAA~~Lke~~s~i~LakVDat~~~~~~~~--------y~v~gyPTlki 105 (493)
T KOG0190|consen 37 ETINGHEFVLVEFYAPWCGHCKALAPE---YEKAATELKEEGSPVKLAKVDATEESDLASK--------YEVRGYPTLKI 105 (493)
T ss_pred HHhccCceEEEEEEchhhhhhhhhCcH---HHHHHHHhhccCCCceeEEeecchhhhhHhh--------hcCCCCCeEEE
Confidence 33445555544 4 899999999963 23445555553 33468999988666655 67899999876
Q ss_pred eCCCCce
Q 005023 82 LSPDLKP 88 (718)
Q Consensus 82 l~p~g~p 88 (718)
.- +|++
T Consensus 106 Fr-nG~~ 111 (493)
T KOG0190|consen 106 FR-NGRS 111 (493)
T ss_pred Ee-cCCc
Confidence 65 6665
No 245
>PRK10137 alpha-glucosidase; Provisional
Probab=77.20 E-value=1.9e+02 Score=35.62 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=37.2
Q ss_pred HHHH---HHHHHHHHHcCChH----HHHHHHHHHHHHHHhcccccCCccccCC
Q 005023 495 AFLI---SGLLDLYEFGSGTK----WLVWAIELQNTQDELFLDREGGGYFNTT 540 (718)
Q Consensus 495 A~li---~all~LYeaTgd~~----~L~~A~~L~~~~~~~F~D~~~Gg~f~t~ 540 (718)
|++. ..|.++++..|+++ |.++|.++.+.+.+.|||++.|.||+..
T Consensus 582 syLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~Dyd 634 (786)
T PRK10137 582 SYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVR 634 (786)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEe
Confidence 5555 67777888888754 8889999999999999999999888654
No 246
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=77.16 E-value=1.1e+02 Score=32.75 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCccc--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCC
Q 005023 457 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD--YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 534 (718)
Q Consensus 457 A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~D--yA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~G 534 (718)
-.++.+||.+.... +|++ .|++ +...| |.|.+.|.+ +.+ +...|.+ ...+.+.+.+.- +...|
T Consensus 198 ~~~~~~~L~~~q~~--~GGf-----~gr~---~k~~D~~ysf~~~a~l--~~l-~~~~~~~-~~~l~~~l~~~q-~~~~G 262 (287)
T cd02894 198 RDRLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSL--KII-GRLHWIN-KNKLKNFILACQ-DEEDG 262 (287)
T ss_pred HHHHHHHHHHhCCC--CCCc-----CCCC---CCCCchhHhhHHHHHH--HHh-ccccccC-HHHHHHHHHHhc-CCCCC
Confidence 44577888776533 3555 2222 22233 445444444 333 4445655 778888887754 44568
Q ss_pred ccccCC
Q 005023 535 GYFNTT 540 (718)
Q Consensus 535 g~f~t~ 540 (718)
||-..+
T Consensus 263 Gf~~~p 268 (287)
T cd02894 263 GFADRP 268 (287)
T ss_pred CcCCCC
Confidence 876544
No 247
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=76.89 E-value=4.5 Score=34.78 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=33.6
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
+.-++|+||+...+ . ..-.+=.|.-|.|+.++.-+. +.+++..+|+...|..++ +++.+
T Consensus 6 yt~~~CPyC~~ak~-~------L~~~g~~~~~i~~~~~~~~~~----~~~~~~~~g~~tvP~I~i---~~~~i 64 (80)
T COG0695 6 YTKPGCPYCKRAKR-L------LDRKGVDYEEIDVDDDEPEEA----REMVKRGKGQRTVPQIFI---GGKHV 64 (80)
T ss_pred EECCCCchHHHHHH-H------HHHcCCCcEEEEecCCcHHHH----HHHHHHhCCCCCcCEEEE---CCEEE
Confidence 34489999998652 1 122233466666665553122 233444568899998755 44444
No 248
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=76.35 E-value=3 Score=35.24 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=35.2
Q ss_pred EEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceeeccc
Q 005023 18 LINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGT 93 (718)
Q Consensus 18 ~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~~~~ 93 (718)
..++|+.|..|.+.. .++++.++ +.+.+ .+--+..++ ++ +|..+.|+.++ ||+..+.|.
T Consensus 6 ~~~~C~~C~~~~~~~---~~~~~~~~---i~~ei--~~~~~~~~~-~~-----ygv~~vPalvI---ng~~~~~G~ 64 (76)
T PF13192_consen 6 FSPGCPYCPELVQLL---KEAAEELG---IEVEI--IDIEDFEEI-EK-----YGVMSVPALVI---NGKVVFVGR 64 (76)
T ss_dssp ECSSCTTHHHHHHHH---HHHHHHTT---EEEEE--EETTTHHHH-HH-----TT-SSSSEEEE---TTEEEEESS
T ss_pred eCCCCCCcHHHHHHH---HHHHHhcC---CeEEE--EEccCHHHH-HH-----cCCCCCCEEEE---CCEEEEEec
Confidence 457899999887522 44444443 44433 222334443 33 78899999966 688877653
No 249
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=76.29 E-value=20 Score=38.93 Aligned_cols=80 Identities=21% Similarity=0.189 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHHHhCCCcccCCC-cEEEEecCCCCCCC--C--CcchHHH--HHHHHHHHHHHHHccCChHHHHHHH
Q 005023 206 ASEGQKMVLFTLQCMAKGGIHDHVGG-GFHRYSVDERWHVP--H--FEKMLYD--QGQLANVYLDAFSLTKDVFYSYICR 278 (718)
Q Consensus 206 ~~~~~~~~~~TL~~m~~gGi~D~v~G-GF~RYsvD~~W~vP--H--FEKmLyD--nA~ll~~ya~Ay~~t~~~~y~~~A~ 278 (718)
+.+.++|+..-=.++.- -+..-.| -|-|-..--.-+-| | .||-... -+-||.-|+..-+.||+|.|.+.|+
T Consensus 134 ~dellkmakelg~kllp--afnttsglp~~rinlk~gi~~pea~~~~e~dtctac~gtlilefaals~~tg~~ifee~ar 211 (587)
T KOG2430|consen 134 DDELLKMAKELGNKLLP--AFNTTSGLPFPRINLKFGIQDPEAHLGREKDTCTACAGTLILEFAALSRFTGAPIFEEKAR 211 (587)
T ss_pred hHHHHHHHHHHhhhhcc--ccccCCCCCCcccchhccccChhhhhcccccchhhccchhhhhHHHHhhccCChhhHHHHH
Confidence 45677777665555543 2333323 35553333222222 1 2444333 3467778888899999999999999
Q ss_pred HHHHHHHHh
Q 005023 279 DILDYLRRD 287 (718)
Q Consensus 279 ~~~~~l~~~ 287 (718)
++++||-..
T Consensus 212 kaldflwek 220 (587)
T KOG2430|consen 212 KALDFLWEK 220 (587)
T ss_pred HHHHHHHHH
Confidence 999998663
No 250
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=75.83 E-value=5.6 Score=40.17 Aligned_cols=62 Identities=8% Similarity=0.094 Sum_probs=38.5
Q ss_pred CCcEEE--E-cCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 13 RRTHFL--I-NTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 13 ~K~ii~--y-~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
+++|++ | +||..|+.|.. .|+ ++|+-.. .-..||||.+.- + .-++..+.|+.+|+- +|+.+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~-~l~--~LA~k~~-~vkFvkI~ad~~--~---------~~~~i~~lPTlliyk-~G~~v 165 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQ-HLS--ELARKFP-DTKFVKIISTQC--I---------PNYPDKNLPTILVYR-NGDIV 165 (192)
T ss_pred CCEEEEEEECCCCchHHHHHH-HHH--HHHHHCC-CCEEEEEEhHHh--H---------hhCCCCCCCEEEEEE-CCEEE
Confidence 356755 3 89999999984 332 3343322 233456666531 1 126788999887775 88887
Q ss_pred e
Q 005023 90 M 90 (718)
Q Consensus 90 ~ 90 (718)
.
T Consensus 166 ~ 166 (192)
T cd02988 166 K 166 (192)
T ss_pred E
Confidence 4
No 251
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=75.47 E-value=64 Score=38.22 Aligned_cols=111 Identities=10% Similarity=0.018 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh-----ccccCCCeEEE----eecCCC--
Q 005023 416 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH-----LYDEQTHRLQH----SFRNGP-- 484 (718)
Q Consensus 416 ~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~-----~~d~~~g~l~~----~~~~g~-- 484 (718)
+-.-+.|.++.+.++.++|.... .++...++++++...+- ..| .+|.++. +|.|..
T Consensus 348 DAtLWfi~al~~Y~~~tgD~~~l------------~~l~p~l~~ii~~y~~G~~~~i~~d-~dGLi~~g~~lTWMDa~~g 414 (575)
T TIGR01561 348 DASLWAIHAIDKTFAYSQDFLFI------------RDVVDKVLDIIDNYCAGNDFAIGMD-NDLIFHKGAPLTWMDAKVD 414 (575)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH------------HHHHHHHHHHHHHHhcCCCcEEEEC-CCccEeCCCCCCCCCCCCC
Confidence 34456789999999999883211 34444555555543321 112 2343332 255542
Q ss_pred -----CCCCCCcccHHHHHHHHHH---HHHHcCC--hHHHHHHHHHHHHHHHhcccccCCccccC
Q 005023 485 -----SKAPGFLDDYAFLISGLLD---LYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNT 539 (718)
Q Consensus 485 -----~~~~~~l~DyA~li~all~---LYeaTgd--~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t 539 (718)
|..-+..|-+|..-.||.. +.+..|+ ..|.++|.++.+.+.+.||+++.|.+|+.
T Consensus 415 ~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~a~~y~~~A~~lk~~F~~~FW~~~~g~l~D~ 479 (575)
T TIGR01561 415 ERAVTPRAGAACEINALWYNALKTAEFLGNELGEDAESLEEKAAGVAKNFAEKFINPDGNCLFDL 479 (575)
T ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCCCeeEEE
Confidence 1122567777776666554 5666665 45889999999999999999876666653
No 252
>PRK10824 glutaredoxin-4; Provisional
Probab=74.89 E-value=9 Score=35.54 Aligned_cols=26 Identities=4% Similarity=0.032 Sum_probs=17.9
Q ss_pred hHHhhhhhcCCcEEE-E-----cCCchhhhhh
Q 005023 4 RSFCGGTKTRRTHFL-I-----NTCHWCHVME 29 (718)
Q Consensus 4 ~a~~~Ak~e~K~ii~-y-----~~C~wChvM~ 29 (718)
+.+++..++|+.|+- . ++|++|+...
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak 37 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAV 37 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHH
Confidence 446666777776644 2 3899999855
No 253
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=74.16 E-value=4.8 Score=46.31 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccc-cCCCCCCccccccccCCCCCCCChHHHHHH---
Q 005023 492 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF-NTTGEDPSVLLRVKEDHDGAEPSGNSVSVI--- 567 (718)
Q Consensus 492 ~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f-~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~--- 567 (718)
+-.--++-||+.+|-.|||+-|++.|.++.+.++..|-.+ +|--+ .+...... .+. +-++. .|.|+.+.
T Consensus 262 E~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntp-tGIp~~~vn~ksG~--~~n---~~was-gg~SILaE~gt 334 (625)
T KOG2204|consen 262 ETNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTP-TGIPKALVNNKSGD--ADN---YGWAS-GGSSILAEFGT 334 (625)
T ss_pred eeeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCC-CCCchhhhccccCc--cCC---ccccc-CcchHhhhcCc
Confidence 3344467899999999999999999999999999998544 33222 11110000 111 11111 12334444
Q ss_pred ---HHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 005023 568 ---NLVRLASIVAGSKSDYYRQNAEHSLAVFE 596 (718)
Q Consensus 568 ---~LlrL~~lt~~~~~~~y~e~a~~~l~~~~ 596 (718)
.+.-|+.+||+ +.|.++..++-..+-
T Consensus 335 lhlef~~LS~ltg~---P~~~ekv~~IRk~l~ 363 (625)
T KOG2204|consen 335 LHLEFSYLSKLTGN---PTFAEKVVKIRKVLN 363 (625)
T ss_pred eeeehHHhhhccCC---chHHHHHHHHHHHHH
Confidence 37778999996 899999988877654
No 254
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=73.82 E-value=9.5 Score=37.32 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=21.8
Q ss_pred cEEEeCCCCceeecccccCCCCCCCcccHHHHHHHH
Q 005023 78 LSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 113 (718)
Q Consensus 78 ~~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i 113 (718)
.+++++++|+..+...+.+.. ..+.+.++|+.+
T Consensus 133 ~tfvId~~G~I~~~~~~~~~~---~~~~~~~~l~~l 165 (167)
T PRK00522 133 AVFVLDENNKVVYSELVPEIT---NEPDYDAALAAL 165 (167)
T ss_pred EEEEECCCCeEEEEEECCCcC---CCCCHHHHHHHh
Confidence 999999999998754321111 134677777765
No 255
>PTZ00062 glutaredoxin; Provisional
Probab=73.82 E-value=7 Score=39.95 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=34.4
Q ss_pred HhhhhhcCCcEEE-E-----cCCchhhhhhccccCcHHHHHHhhcccEEE-EecCCCCcchHHHHHHHHHHhcCCCCCCc
Q 005023 6 FCGGTKTRRTHFL-I-----NTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPL 78 (718)
Q Consensus 6 ~~~Ak~e~K~ii~-y-----~~C~wChvM~~esf~d~~va~~ln~~Fv~v-kvD~ee~pd~d~~y~~~~q~~~g~~GwP~ 78 (718)
+++..++++.++- . ++|+||+.+. ++|+++=|.. .+|.++++++.+..++ ++|....|.
T Consensus 106 v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k----------~~L~~~~i~y~~~DI~~d~~~~~~l~~----~sg~~TvPq 171 (204)
T PTZ00062 106 IERLIRNHKILLFMKGSKTFPFCRFSNAVV----------NMLNSSGVKYETYNIFEDPDLREELKV----YSNWPTYPQ 171 (204)
T ss_pred HHHHHhcCCEEEEEccCCCCCCChhHHHHH----------HHHHHcCCCEEEEEcCCCHHHHHHHHH----HhCCCCCCe
Confidence 4444455555432 2 4799999854 4555432222 3577677666554333 344333343
Q ss_pred EEEeCCCCcee
Q 005023 79 SVFLSPDLKPL 89 (718)
Q Consensus 79 ~vfl~p~g~p~ 89 (718)
||++ |+-+
T Consensus 172 -VfI~--G~~I 179 (204)
T PTZ00062 172 -LYVN--GELI 179 (204)
T ss_pred -EEEC--CEEE
Confidence 3443 5555
No 256
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=73.73 E-value=45 Score=34.19 Aligned_cols=128 Identities=14% Similarity=0.015 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCC--CChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCC
Q 005023 153 PQNALRLCAEQLSKSYDSRFGGFGSAPKF--PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 230 (718)
Q Consensus 153 ~~~~~~~~~~~l~~~~D~~~GGfg~apKF--P~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~ 230 (718)
....+++++..|.+.. ...|||+..+.- |.+..-.+.+.........+ ....+.+.+.++-+... ...+
T Consensus 50 ~~~~~~~~~~~l~~~q-~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~---q~~d 120 (300)
T cd00688 50 ADENIEKGIQRLLSYQ-LSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-----AVDRIDLARALNWLLSL---QNED 120 (300)
T ss_pred chHHHHHHHHHHHhcc-CCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-----ccCHHHHHHHHHHHHHc---cCCC
Confidence 3456777888887655 457999887653 33332222222111110000 11233444555555442 3456
Q ss_pred CcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 005023 231 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 295 (718)
Q Consensus 231 GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf 295 (718)
|||..+.-... ..++-+.-....+..+.++..+..... ...+.++++||.+.. .++|||
T Consensus 121 G~~~~~~~~~~-~~~~~~~~~~~t~~al~aL~~~~~~~~----~~~~~~~~~~l~~~q-~~~g~~ 179 (300)
T cd00688 121 GGFREDGPGNH-RIGGDESDVRLTAYALIALALLGKLDP----DPLIEKALDYLLSCQ-NYDGGF 179 (300)
T ss_pred CCeeeecCCCC-cccCCCCcccHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHh-cCCCCc
Confidence 78774332111 012234445567778888877665443 567889999999854 678888
No 257
>PRK15000 peroxidase; Provisional
Probab=73.00 E-value=17 Score=36.77 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=24.8
Q ss_pred CCCcEEEeCCCCceeecccc-cCCCCCCCcccHHHHHHHHH
Q 005023 75 GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 114 (718)
Q Consensus 75 GwP~~vfl~p~g~p~~~~~y-~p~~~~~~~~~f~~~L~~i~ 114 (718)
+.|.++|++|+|+..+...+ .|.. ..+.++|+.+.
T Consensus 124 ~~r~tfiID~~G~I~~~~~~~~~~g-----r~~~eilr~l~ 159 (200)
T PRK15000 124 ALRGSFLIDANGIVRHQVVNDLPLG-----RNIDEMLRMVD 159 (200)
T ss_pred EEeEEEEECCCCEEEEEEecCCCCC-----CCHHHHHHHHH
Confidence 68999999999999875433 3332 26777777553
No 258
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=72.10 E-value=14 Score=34.61 Aligned_cols=15 Identities=7% Similarity=-0.148 Sum_probs=12.3
Q ss_pred CcEEEeCCCCceeec
Q 005023 77 PLSVFLSPDLKPLMG 91 (718)
Q Consensus 77 P~~vfl~p~g~p~~~ 91 (718)
|++++++++|+..+.
T Consensus 115 ~~~~lid~~G~v~~~ 129 (149)
T cd03018 115 RAVFVIDRDGIIRYA 129 (149)
T ss_pred ceEEEECCCCEEEEE
Confidence 488999999998753
No 259
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=69.80 E-value=2.6e+02 Score=33.81 Aligned_cols=160 Identities=9% Similarity=0.019 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccc-cCCCCCCCCCCCCh
Q 005023 106 FKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDS-RFGGFGSAPKFPRP 184 (718)
Q Consensus 106 f~~~L~~i~~~w~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~-~~GGfg~apKFP~~ 184 (718)
.-+....+...-+..-+.+.+.-..--+...+... ..+. .-.++....+--|+...|. ..|++=-+|-+|.|
T Consensus 209 ~~~a~~~~~~~l~~g~~~~~~~~~~~W~~w~~~~~------~~~~-~~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~p 281 (648)
T TIGR01535 209 AYEAAKTAVATLKEGYRRVKDAYIDEWEKYLNSLN------NFNG-KGNSLYYVSMMILKAHEDKTNPGAYIASLSIPWG 281 (648)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc------cCCc-hHHHHHHHHHHHHHHhcCCCCCCcEEEecCCCCC
Confidence 44555555555555666665544333322221110 0111 1245566666778888888 45999889988865
Q ss_pred hHH----------------HHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCc-EEEEecCCCCCCCCC
Q 005023 185 VEI----------------QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG-FHRYSVDERWHVPHF 247 (718)
Q Consensus 185 ~~l----------------~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~GG-F~RYsvD~~W~vPHF 247 (718)
... .+........ |. .+.+..+....++... . .|. .++|.+|..-..+
T Consensus 282 e~~g~~~n~dYryvW~RD~a~~a~AL~~~---G~---~~~a~~~~~~l~~~~~------~-~G~~lq~y~vdG~~~~~-- 346 (648)
T TIGR01535 282 DGQADDNTGGYHLVWPRDLYQVANAFLAA---GD---VDSALRSLDYLAKVQQ------D-NGMFPQNSWVDGKPYWT-- 346 (648)
T ss_pred ccCCCCCCCceEEEehhhHHHHHHHHHHC---CC---HHHHHHHHHHHHHHhc------c-CCCcCceeccCCCCCCC--
Confidence 322 0111111111 11 1233333333333332 2 344 5679999876555
Q ss_pred cchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhc
Q 005023 248 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDM 288 (718)
Q Consensus 248 EKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m 288 (718)
|.-|-.-|.+|.+....++... ..|...++.+++||.+..
T Consensus 347 ~iQlD~~g~~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 347 GIQLDETAFPILLAYRLHRYDH-AFYDKMLKPAADFIVKNG 386 (648)
T ss_pred CccccHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHcC
Confidence 4555556777776666666433 678889999999999854
No 260
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=68.98 E-value=5.6 Score=45.73 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=46.7
Q ss_pred HhhhhhcCCcEEE---EcCCchhhhhhccccCcHHHHHHhh--cccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEE
Q 005023 6 FCGGTKTRRTHFL---INTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 80 (718)
Q Consensus 6 ~~~Ak~e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln--~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~v 80 (718)
-+.+-.++|-|++ ..||..|+.++.. =.++|+.+. .+-|.-|+|...+ |+... ...|+||..
T Consensus 377 d~iv~de~KdVLvEfyAPWCgHCk~laP~---~eeLAe~~~~~~~vviAKmDaTaN-d~~~~---------~~~~fPTI~ 443 (493)
T KOG0190|consen 377 DDIVLDEGKDVLVEFYAPWCGHCKALAPI---YEELAEKYKDDENVVIAKMDATAN-DVPSL---------KVDGFPTIL 443 (493)
T ss_pred HHHhhccccceEEEEcCcccchhhhhhhH---HHHHHHHhcCCCCcEEEEeccccc-cCccc---------cccccceEE
Confidence 3456677777765 4899999999852 245555554 4578889998877 44432 235799998
Q ss_pred EeCCCC
Q 005023 81 FLSPDL 86 (718)
Q Consensus 81 fl~p~g 86 (718)
|.-..+
T Consensus 444 ~~pag~ 449 (493)
T KOG0190|consen 444 FFPAGH 449 (493)
T ss_pred EecCCC
Confidence 886655
No 261
>PLN02412 probable glutathione peroxidase
Probab=67.89 E-value=31 Score=33.71 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=15.0
Q ss_pred CCCCcEEEeCCCCceeec
Q 005023 74 GGWPLSVFLSPDLKPLMG 91 (718)
Q Consensus 74 ~GwP~~vfl~p~g~p~~~ 91 (718)
.+.|++++++++|++...
T Consensus 129 ~~~p~tflId~~G~vv~~ 146 (167)
T PLN02412 129 KWNFTKFLVSKEGKVVQR 146 (167)
T ss_pred CCCCeeEEECCCCcEEEE
Confidence 456999999999999853
No 262
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=67.88 E-value=76 Score=34.65 Aligned_cols=96 Identities=19% Similarity=0.175 Sum_probs=64.3
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEE--Ee--ecCCCCC
Q 005023 413 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQ--HS--FRNGPSK 486 (718)
Q Consensus 413 ilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~--g~l~--~~--~~~g~~~ 486 (718)
.-|+--|-||--++..++.+|+ +-|-+.|+++++||++.-....+ |... |+ |....+.
T Consensus 182 tctac~gtlilefaals~~tg~----------------~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsg 245 (587)
T KOG2430|consen 182 TCTACAGTLILEFAALSRFTGA----------------PIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSG 245 (587)
T ss_pred chhhccchhhhhHHHHhhccCC----------------hhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccC
Confidence 4466678889889999999987 77999999999999886544222 2221 21 2222223
Q ss_pred CCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005023 487 APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 527 (718)
Q Consensus 487 ~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~ 527 (718)
+.+-.+.| -+=+|..|-..||+.||++-..-.+.+...
T Consensus 246 igagidsy---yey~lkayillgddsfldrfn~hydai~ry 283 (587)
T KOG2430|consen 246 IGAGIDSY---YEYLLKAYILLGDDSFLDRFNKHYDAIKRY 283 (587)
T ss_pred cCcchHHH---HHHHHHHhheeccHHHHHHHHHHHHHHHHH
Confidence 33334444 344567777889999999988777776544
No 263
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=67.64 E-value=19 Score=39.75 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC---CCCCCcccHH
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---KAPGFLDDYA 495 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~---~~~~~l~DyA 495 (718)
-.++.||..|++.-+++ ...|+..|+.+..-++.+... .|+..- .-|.. ......-+-+
T Consensus 116 l~iA~ALl~A~~~Wg~~--------------~~~y~~~A~~~~~~i~~~~v~--~g~~~l--lpG~~~f~~~~~~~~npS 177 (342)
T PF01270_consen 116 LDIAYALLLAARRWGDG--------------AYNYLAEALAIINAIKTHEVN--PGRYVL--LPGDWGFNSDDYWTTNPS 177 (342)
T ss_dssp HHHHHHHHHHHHHHTSS--------------SSHHHHHHHHHHHHHHHHHEE--TTEEEE--CSSSSSCBTTSEEEEEGG
T ss_pred HHHHHHHHHHHhhcCCc--------------chhHHHHHHHHHHHHHhheeC--CCceEE--eccccccCCCCceEeChh
Confidence 47889999999999852 157999999999998887765 342221 22211 1111111334
Q ss_pred HHH-HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCC
Q 005023 496 FLI-SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 534 (718)
Q Consensus 496 ~li-~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~G 534 (718)
+.+ -++-.+++++++..|.+.+....+.+.+.. .+.+|
T Consensus 178 Y~~~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~-~~~tG 216 (342)
T PF01270_consen 178 YFMPPAFRAFAAATGDPRWNEVADSSYALLQKAS-FPKTG 216 (342)
T ss_dssp GS-HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHH-TTTTT
T ss_pred hccHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-ccCCC
Confidence 444 778899999999999999998888776665 33444
No 264
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=66.52 E-value=1.3e+02 Score=34.63 Aligned_cols=198 Identities=16% Similarity=0.066 Sum_probs=93.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhcc--CCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHH
Q 005023 376 ASKLGMPLEKYLNILGECRRKLFDVRSK--RPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEY 453 (718)
Q Consensus 376 a~~~g~~~~~~~~~l~~~r~~L~~~R~~--R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~ 453 (718)
+..|.-+.+.+.++.+.++..++..-.. --=|.+|++ ..|.|=+.....-++..+++ .
T Consensus 109 ~g~F~~sd~~ln~i~~~~~~T~~~n~~~~~~Dcp~RdER--~~w~GD~~~~~~~~~~~~~~----------------~-- 168 (509)
T PF05592_consen 109 AGSFSCSDPLLNRIWEMSRRTLRSNMQDVFTDCPKRDER--LGWTGDARVSALTAYYSFGD----------------A-- 168 (509)
T ss_dssp --EEEES-HHHHHHHHHHHHHHHHTBSSSB-SBTTT-T-----BHHHHHHHHHHHHCCT------------------H--
T ss_pred cCceecCcHHHHHHHHHHHHHHHhhCCCCceECcchhhh--cCCcchHHHHHHHHHHhCCc----------------H--
Confidence 3355567778888888888777653321 223777666 45666553333333334444 2
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccccc
Q 005023 454 MEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA-FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 532 (718)
Q Consensus 454 l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA-~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~ 532 (718)
...++..+.+...... +|.+....-... ......-+|+ +.+..+.++|..|||.++++..-.-.+..++.+....
T Consensus 169 -~l~~~~l~~~~~~q~~--~G~~p~~~P~~~-~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~ 244 (509)
T PF05592_consen 169 -ALYRKWLRDFADSQRP--DGLLPSVAPSYG-GGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRV 244 (509)
T ss_dssp -HHHHHHHHHHHGGTTT--STT-SSBSS----SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB
T ss_pred -HHHHHHHHHHHHhhcc--cCCceEEecccC-CCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 2444555445544332 454433211100 1122334553 6788999999999999998776666665555554322
Q ss_pred CCc-c--ccCCCCCCccccccccCCCCCCCC---hHHHHHH---HHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHH
Q 005023 533 GGG-Y--FNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVI---NLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLK 600 (718)
Q Consensus 533 ~Gg-~--f~t~~~~~~l~~r~k~~~D~a~PS---~ns~~a~---~LlrL~~lt~~~-~~~~y~e~a~~~l~~~~~~i~ 600 (718)
..+ . ....-.|..... ...+...|. .|+..+. .+..|+.++|+. ....|+++|+++-+++...+-
T Consensus 245 ~~~~~~~~~~~~~DW~~~~---~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~ 319 (509)
T PF05592_consen 245 DDGLDGLPGWGFGDWLAPG---NDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFW 319 (509)
T ss_dssp -TSSB-CCSB--S-SS-------TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCE
T ss_pred CccccCCCCCceeecCCcc---CcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 220 0 000000000000 011111121 4454444 466677777751 134688888888777766543
No 265
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.08 E-value=1.9e+02 Score=30.86 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccc
Q 005023 458 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 537 (718)
Q Consensus 458 ~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f 537 (718)
..+.-||-++... +|+| +|+| --+.|-+|--+.|..|- +-|...|.++. +|.+.+.. --|.++|||-
T Consensus 213 d~lgwwlceRQ~~--sGGL-----NGRp---eKlpDVCYSwWvlsSL~-iigrl~wId~e-kL~~FIl~-cQd~~~GGfs 279 (329)
T KOG0366|consen 213 DLLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSLA-IIGRLHWIDRE-KLTKFILA-CQDEETGGFS 279 (329)
T ss_pred HHHHHHHHhccCC--CCCC-----CCCc---ccCcchhhHHHHHhHHH-HhhhhhhccHH-HHHHHHHh-cCCCCCCCcC
Confidence 3455666666544 4554 4554 44677777767776664 44777888765 45555554 3477889998
Q ss_pred cCCCC
Q 005023 538 NTTGE 542 (718)
Q Consensus 538 ~t~~~ 542 (718)
+.+.+
T Consensus 280 DRpgd 284 (329)
T KOG0366|consen 280 DRPGD 284 (329)
T ss_pred CCCCC
Confidence 87654
No 266
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=65.17 E-value=63 Score=35.25 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEe----------ecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHS----------FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIEL 520 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~----------~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L 520 (718)
+..++.-+...+|+.++-+. +|-+--+ |..|.+ =++.-|...|++.++++||+.|.+.
T Consensus 241 ~~~~~dVK~sldym~~~rfp--sGNyP~s~~~~~drLVhWcHGAp----------Gv~~~L~kAy~VF~Eekyl~aa~ec 308 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFP--SGNYPSSEGNKRDRLVHWCHGAP----------GVAYTLAKAYQVFKEEKYLEAAMEC 308 (403)
T ss_pred hhHHHhhhhHHHHHHHccCC--CCCCCcccCCCcceeeeeccCCc----------hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55788888899998876543 2322211 222221 2577889999999999999999999
Q ss_pred HHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005023 521 QNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 593 (718)
Q Consensus 521 ~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~ 593 (718)
.+.++++=.=+++-| +-+| -+||+ -.++.|+++|++ ..|..||.+..+
T Consensus 309 advVW~rGlLkkg~G-----------------ichG--vaGNa---YvFLsLyRLT~d---~kYlyRA~kFae 356 (403)
T KOG2787|consen 309 ADVVWKRGLLKKGVG-----------------ICHG--VAGNA---YVFLSLYRLTGD---MKYLYRAKKFAE 356 (403)
T ss_pred HHHHHHhhhhhcCCc-----------------cccc--ccCch---hhhHhHHHHcCc---HHHHHHHHHHHH
Confidence 998876522121111 1122 35665 357778999996 889999955433
No 267
>PRK13599 putative peroxiredoxin; Provisional
Probab=64.54 E-value=17 Score=37.34 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=26.2
Q ss_pred CCCcEEEeCCCCceeecccccCCCCCCCcccHHHHHHHHHHH
Q 005023 75 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 116 (718)
Q Consensus 75 GwP~~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~~~ 116 (718)
+.|.++|++|+|+..+... .|.. .| ..+-++|+.|..+
T Consensus 118 ~~R~tfIID~dG~Ir~~~~-~p~~--~g-r~~~eilr~l~~l 155 (215)
T PRK13599 118 TVRAVFIVDDKGTIRLIMY-YPQE--VG-RNVDEILRALKAL 155 (215)
T ss_pred eeeEEEEECCCCEEEEEEE-cCCC--CC-CCHHHHHHHHHHh
Confidence 5799999999999987643 3422 22 3677777766543
No 268
>PLN02266 endoglucanase
Probab=64.24 E-value=2.3e+02 Score=33.20 Aligned_cols=125 Identities=10% Similarity=-0.036 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCC--CC-------------------CcccHHHHHHHHHHHHHHcC
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PG-------------------FLDDYAFLISGLLDLYEFGS 509 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~--~~-------------------~l~DyA~li~all~LYeaTg 509 (718)
+.+|+.++-..+|+++.... +|.+++.-.++..+. .+ -.+--+.++-+|...+.+..
T Consensus 130 pd~Ldelkw~~D~llk~~~~--~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk 207 (510)
T PLN02266 130 QNAKDAIRWATDYLLKATAH--PDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFR 207 (510)
T ss_pred HHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 78999999999999976543 577888654432100 01 11122344555555555544
Q ss_pred --ChH----HHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 005023 510 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 583 (718)
Q Consensus 510 --d~~----~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~ 583 (718)
|+. .|+.|+++++.+..+ .|.|....... ...+....-+-.-.++++-..|+..||+ +.
T Consensus 208 ~~D~~yA~~~L~~Ak~ly~fa~~~-----~g~y~~~~~~~-------~~~~y~s~s~~~DEl~WAAawLy~ATGd---~~ 272 (510)
T PLN02266 208 KSDPTYSKLLVRRAIRVFQFADKY-----RGAYSNGLKPD-------VCPFYCSYSGYQDELLWGAAWLHKATKN---PT 272 (510)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCccCCCCcc-------cCCCcccCCcchHHHHHHHHHHHHHhCC---HH
Confidence 444 578888888776542 22221110000 0000000000123566777889999996 78
Q ss_pred HHHHHHHHH
Q 005023 584 YRQNAEHSL 592 (718)
Q Consensus 584 y~e~a~~~l 592 (718)
|.+.+....
T Consensus 273 Yl~~~~~~~ 281 (510)
T PLN02266 273 YLNYIQVNG 281 (510)
T ss_pred HHHHHHHHH
Confidence 998876543
No 269
>PLN02345 endoglucanase
Probab=63.70 E-value=2.5e+02 Score=32.53 Aligned_cols=118 Identities=11% Similarity=-0.036 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCC--CCCCccc-------------------HHHHHHHHHHHHHHcC
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDD-------------------YAFLISGLLDLYEFGS 509 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~--~~~~l~D-------------------yA~li~all~LYeaTg 509 (718)
+++++.++-..+||++..- .+|.+++...++..+ .....|| -+.++.+|...+.+..
T Consensus 82 ~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk 159 (469)
T PLN02345 82 DSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFK 159 (469)
T ss_pred HHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 6899999999999987653 357888765443211 1111222 2345555555555554
Q ss_pred --Ch----HHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCC--hHHHHHHHHHHHHHHhCCCCc
Q 005023 510 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSKS 581 (718)
Q Consensus 510 --d~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS--~ns~~a~~LlrL~~lt~~~~~ 581 (718)
|+ ++|+.|+++++.+..+ .|.|....... .+..+| -+-.++++-..|+..||+
T Consensus 160 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~~~-----------~~~Y~s~~~~DEl~WAAawLy~ATgd--- 220 (469)
T PLN02345 160 SSDSTYSDTLLKHAKQLFNFADKY-----RGSYSESIPEV-----------QDYYNSTGYGDELLWAASWLYHATGD--- 220 (469)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCCcc-----------CCCCCCcccccHHHHHHHHHHHHhCC---
Confidence 33 4688888888887653 22232211000 011111 112578888889999996
Q ss_pred hHHHHHHH
Q 005023 582 DYYRQNAE 589 (718)
Q Consensus 582 ~~y~e~a~ 589 (718)
..|.+.+.
T Consensus 221 ~~Yl~~~~ 228 (469)
T PLN02345 221 KTYLAYVT 228 (469)
T ss_pred HHHHHHHH
Confidence 78988773
No 270
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=62.80 E-value=26 Score=37.43 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 005023 208 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 287 (718)
Q Consensus 208 ~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~ 287 (718)
++.+.+...++++.. |-+-+|||.- |...+-+--.+.-|..+.++.+|.... +....+.+++++||.+
T Consensus 46 ~~~~~l~~g~~~~~~---~q~~dGsf~~------w~~~~~~~~~wlTa~v~~~L~~a~~~~--~v~~~~i~ra~~wL~~- 113 (292)
T cd02897 46 KALGFLRTGYQRQLT---YKHSDGSYSA------FGESDKSGSTWLTAFVLKSFAQARPFI--YIDENVLQQALTWLSS- 113 (292)
T ss_pred HHHHHHHHHHHHHHh---ccCCCCCeec------ccCCCCCcchhhHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHH-
Confidence 334444444444433 5667899853 311112446778999999999987432 3346789999999997
Q ss_pred ccCCCCcee
Q 005023 288 MIGPGGEIF 296 (718)
Q Consensus 288 m~~p~Ggf~ 296 (718)
++.++|||.
T Consensus 114 ~Q~~dG~f~ 122 (292)
T cd02897 114 HQKSNGCFR 122 (292)
T ss_pred hcCCCCCCC
Confidence 578899985
No 271
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=61.95 E-value=19 Score=30.51 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=33.8
Q ss_pred CCcEEE---EcCCchhhhhhccccCcHHHHHHhhc---ccEEEEecCC-CCcchHHHHHHHHHHhcCCCCCCcEE
Q 005023 13 RRTHFL---INTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSV 80 (718)
Q Consensus 13 ~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~---~Fv~vkvD~e-e~pd~d~~y~~~~q~~~g~~GwP~~v 80 (718)
+++++. .+||+.|+.+ .|.+.++..+ ....+.+|.. ..+++...|.. ....+|..+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~p~~~ 94 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV------AVRSIPTLL 94 (127)
T ss_pred CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh------hhccCCeEE
Confidence 666655 5999999998 4555554444 3455666665 55555555442 134567765
No 272
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=61.62 E-value=1.1e+02 Score=33.66 Aligned_cols=126 Identities=13% Similarity=0.067 Sum_probs=79.6
Q ss_pred HHHHHHHHHhccccCCCeEEEeecCCCCC-C---CCCcccHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhcccc
Q 005023 458 ESAASFIRRHLYDEQTHRLQHSFRNGPSK-A---PGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDR 531 (718)
Q Consensus 458 ~~~~~~l~~~~~d~~~g~l~~~~~~g~~~-~---~~~l~DyA~li~all~LYeaTg--d~~~L~~A~~L~~~~~~~F~D~ 531 (718)
.++.+|.++|+..+.+|.+-+.+..+... . ..=.|.=-+.+.|||...+..+ ...|+..|+.+...+.++-..
T Consensus 75 d~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~~~~y~~~A~~~~~~i~~~~v~- 153 (342)
T PF01270_consen 75 DRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDGAYNYLAEALAIINAIKTHEVN- 153 (342)
T ss_dssp HHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHEE-
T ss_pred HHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHhheeC-
Confidence 45778888898855566666665443221 1 1234455688999999999999 558899999999988777654
Q ss_pred cCCccccCCCCC-----CccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 005023 532 EGGGYFNTTGED-----PSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 599 (718)
Q Consensus 532 ~~Gg~f~t~~~~-----~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~~i 599 (718)
.|.....+.+. ...++ .||=- +.-.+..++..+++ ..|.+.++..+..+....
T Consensus 154 -~g~~~llpG~~~f~~~~~~~~---------npSY~--~~pa~~~f~~~~~~---~~W~~v~~~~~~ll~~~~ 211 (342)
T PF01270_consen 154 -PGRYVLLPGDWGFNSDDYWTT---------NPSYF--MPPAFRAFAAATGD---PRWNEVADSSYALLQKAS 211 (342)
T ss_dssp -TTEEEECSSSSSCBTTSEEEE---------EGGGS---HHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred -CCceEEeccccccCCCCceEe---------Chhhc--cHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhc
Confidence 34333332211 11111 23333 22446688889985 679988888877655443
No 273
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=61.31 E-value=71 Score=35.76 Aligned_cols=105 Identities=15% Similarity=0.074 Sum_probs=68.2
Q ss_pred CCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC--eEEEeecCCCC
Q 005023 408 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH--RLQHSFRNGPS 485 (718)
Q Consensus 408 ~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g--~l~~~~~~g~~ 485 (718)
..|..-=|+---.+.+||.+|++.-++ ++|++.|+.+++.|.++...+..| .++.--..|-.
T Consensus 108 v~D~NsASDGDl~IA~ALl~A~~~W~~----------------~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~ 171 (376)
T PRK11097 108 VLDANSASDADLWIAYSLLEAGRLWKE----------------PRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFA 171 (376)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccccCCCceeecccccccc
Confidence 345555555667789999999999987 789999999999999987664433 22211111100
Q ss_pred CCCCC-cccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q 005023 486 KAPGF-LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 528 (718)
Q Consensus 486 ~~~~~-l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F 528 (718)
..... ++.-=++...+-.+++++++..|.+.+....+.+.+.-
T Consensus 172 ~~~~~~~NPSY~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~a 215 (376)
T PRK11097 172 DDGSWRLNPSYLPPQLLRRFARFLPGGPWAALAATNARLLLETA 215 (376)
T ss_pred CCCCCeECcccccHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 00111 22222344455556788999999999988888876643
No 274
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=60.66 E-value=1.7e+02 Score=34.21 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=40.8
Q ss_pred hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe
Q 005023 413 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 479 (718)
Q Consensus 413 ilt~WNgl~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~ 479 (718)
|-++-|+++.. .|++.++.+|+... ...|.+.|.+..+.|.+.|||++.|.++.-
T Consensus 305 ipVDLNa~L~~~e~~LA~~a~~lG~~~~------------a~~~~~~A~~~~~aI~~~lWdee~g~~~Dy 362 (512)
T PF01204_consen 305 IPVDLNAILYRNEKDLAEFAELLGDQEK------------AEEYRQRAEERKEAINQYLWDEEDGFYYDY 362 (512)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHTT-HHH------------HHHHHHHHHHHHHHHHHHTEETTTTEE--E
T ss_pred cCchHHHHHHHHHHHHHHHHHHcCchhH------------HHHHHHHHHHHHHHHHHhCccCCCCeEEee
Confidence 44567888765 78888999986321 157999999999999999999988876654
No 275
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=59.69 E-value=24 Score=31.33 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhccCCCCce
Q 005023 274 SYICRDILDYLRRDMIGPGGEI 295 (718)
Q Consensus 274 ~~~A~~~~~~l~~~m~~p~Ggf 295 (718)
...++++++||++ ++.++|||
T Consensus 91 ~~~~~~a~~~l~~-~Q~~dGg~ 111 (113)
T PF13249_consen 91 EEAVRKAVDWLLS-CQNPDGGW 111 (113)
T ss_dssp HTTHCCHHHHHHH-TB-TTSSB
T ss_pred cHHHHHHHHHHHH-hcCCCCCC
Confidence 7788999999998 77889998
No 276
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=59.65 E-value=7 Score=43.61 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=37.6
Q ss_pred cEEEE-cCCchhhhhhccccCcHHHHHHhh--cccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCc
Q 005023 15 THFLI-NTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 87 (718)
Q Consensus 15 ~ii~y-~~C~wChvM~~esf~d~~va~~ln--~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~ 87 (718)
+|.-| .||+.|++|+.+..+- +..+. ...--.++|....+.+.+. .+.++.|+.+|+-+..+
T Consensus 166 lv~f~aPwc~~ck~l~~~~~~~---a~~~~~~~~v~~~~~d~~~~~~~~~~--------~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 166 LVEFYAPWCGHCKKLAPEWEKL---AKLLKSKENVELGKIDATVHKSLASR--------LEVRGYPTLKLFPPGEE 230 (383)
T ss_pred EEEEeccccHHhhhcChHHHHH---HHHhccCcceEEEeeccchHHHHhhh--------hcccCCceEEEecCCCc
Confidence 34334 8999999997655433 33443 4444556777733333332 56789999966555544
No 277
>PLN00119 endoglucanase
Probab=59.45 E-value=3.2e+02 Score=31.81 Aligned_cols=116 Identities=11% Similarity=0.102 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCC-----------CCC---------cccH-HHHHHHHHHHHHHcC
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------PGF---------LDDY-AFLISGLLDLYEFGS 509 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~-----------~~~---------l~Dy-A~li~all~LYeaTg 509 (718)
+..|+.++-..+|+++..- ..+.+++.-.+|..+. .+. -.|- +.++-+|...+.+..
T Consensus 117 ~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk 194 (489)
T PLN00119 117 GNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFA 194 (489)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 6789999999999997653 3466776544432110 011 0122 334445555555544
Q ss_pred --ChH----HHHHHHHHHHHHHHh---cccc--cCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005023 510 --GTK----WLVWAIELQNTQDEL---FLDR--EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 578 (718)
Q Consensus 510 --d~~----~L~~A~~L~~~~~~~---F~D~--~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~ 578 (718)
|+. .|+.|+++++.+..+ +.+. ..++||.++ +-.-.++++-..|+..||+
T Consensus 195 ~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~Y~ss-------------------~~~DEl~WAAawLY~aTgd 255 (489)
T PLN00119 195 PSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGFYASS-------------------GYEDELLWAAAWLHRATND 255 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCC-------------------chhhHHHHHHHHHHHHhCC
Confidence 444 477888888777653 1000 011222221 1112577888889999996
Q ss_pred CCchHHHHHHHH
Q 005023 579 SKSDYYRQNAEH 590 (718)
Q Consensus 579 ~~~~~y~e~a~~ 590 (718)
..|.+.+..
T Consensus 256 ---~~Yl~~~~~ 264 (489)
T PLN00119 256 ---QTYLDYLTQ 264 (489)
T ss_pred ---HHHHHHHHh
Confidence 788887653
No 278
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.20 E-value=18 Score=33.74 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=30.5
Q ss_pred chhHHhhhhhc---CCcEEEE-----------cCCchhhhhhccccCcHHHHHHhh---cccEEEEecCCCCc
Q 005023 2 GRRSFCGGTKT---RRTHFLI-----------NTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERP 57 (718)
Q Consensus 2 ~~~a~~~Ak~e---~K~ii~y-----------~~C~wChvM~~esf~d~~va~~ln---~~Fv~vkvD~ee~p 57 (718)
|.+.++..+++ +|-|++| |||+-|.+=+ |-|-+.++ ++-.-|.|+.=+||
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AE------Pvi~~alk~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAE------PVINEALKHAPEDVHFVHVYVGNRP 77 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhh------HHHHHHHHhCCCceEEEEEEecCCC
Confidence 44555555553 5556542 8999999844 45555555 34455666666665
No 279
>PRK13270 treF trehalase; Provisional
Probab=59.08 E-value=3.3e+02 Score=32.18 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=76.5
Q ss_pred hhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCCCCC
Q 005023 414 IVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPG 489 (718)
Q Consensus 414 lt~WNgl~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~~~~~ 489 (718)
.++-|++++. .|++.++.+|+... ..+|.+.|.+..+.|.+.||+++.|.++.- ++.++
T Consensus 348 pVDLNaiL~~~e~~LA~~a~~lG~~~~------------a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~----- 410 (549)
T PRK13270 348 PIDLNAFLYKLESAIANISALKGEKET------------EALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQ----- 410 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhccCcccCeEEecccccCc-----
Confidence 3356777755 66677777776311 146888999999999999999877766543 23222
Q ss_pred CcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCC--CCCChHHHHHH
Q 005023 490 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDG--AEPSGNSVSVI 567 (718)
Q Consensus 490 ~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~--a~PS~ns~~a~ 567 (718)
. ++ +.+.+++=|+-=..++ +.|..+.+.+..+|.. .||...+.. .....-|+ .-|-.+-+++.
T Consensus 411 -~-~~-~s~a~f~PLwaG~a~~---~qa~~l~~~l~~~ll~--pGGl~tS~~-------~sgqQWD~PN~WaPlqwmiie 475 (549)
T PRK13270 411 -L-AL-FSAAAIVPLYVGMANH---EQADRLANAVRSRLLT--PGGILASEY-------ETGEQWDKPNGWAPLQWMAIQ 475 (549)
T ss_pred -c-cc-ccHHHHHHHHhCCCCH---HHHHHHHHHHHHhccc--CCCcCCCCC-------CCcccCCCCCCCccHHHHHHH
Confidence 1 22 4667777777433333 4577777777666653 455443321 11122233 34556667777
Q ss_pred HHHHHH
Q 005023 568 NLVRLA 573 (718)
Q Consensus 568 ~LlrL~ 573 (718)
.|.+.+
T Consensus 476 GL~ryG 481 (549)
T PRK13270 476 GFKMYG 481 (549)
T ss_pred HHHHcC
Confidence 776644
No 280
>PLN02171 endoglucanase
Probab=58.74 E-value=3.9e+02 Score=32.18 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCC--CCCcc------------------c-HHHHHHHHHHHHHHcC
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLD------------------D-YAFLISGLLDLYEFGS 509 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~--~~~l~------------------D-yA~li~all~LYeaTg 509 (718)
+..|+.++-..+|+++..- +.+.+++.-.+|..+. ....| | -+.++.+|...+.+..
T Consensus 116 ~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk 193 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFR 193 (629)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhcc
Confidence 6789999999999997653 3567777654432200 01111 1 2334455555555543
Q ss_pred --ChH----HHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCC---hHHHHHHHHHHHHHHhCCCC
Q 005023 510 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVINLVRLASIVAGSK 580 (718)
Q Consensus 510 --d~~----~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS---~ns~~a~~LlrL~~lt~~~~ 580 (718)
|+. .|+.|+++++.+..+ .|. |..+... ..+..+| -+-.++++-..|+..||+
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~~~-----~g~-y~~~~~~----------~~~~Y~s~s~y~DEl~WAAawLy~ATgd-- 255 (629)
T PLN02171 194 RSNPGYANELLTHAKQLFDFADKY-----RGK-YDSSITV----------AQKYYRSVSGYGDELLWAAAWLYQATNN-- 255 (629)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhC-----CCc-ccCCCcc----------cCCccCCCCCccHHHHHHHHHHHHHhCC--
Confidence 444 478888888777553 221 2111000 0011111 124688888889999996
Q ss_pred chHHHHHHHHHHH
Q 005023 581 SDYYRQNAEHSLA 593 (718)
Q Consensus 581 ~~~y~e~a~~~l~ 593 (718)
..|.+.+.....
T Consensus 256 -~~Yl~~~~~~~~ 267 (629)
T PLN02171 256 -QYYLDYLGNNGD 267 (629)
T ss_pred -HHHHHHHHHHHH
Confidence 789988765433
No 281
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=58.65 E-value=76 Score=38.16 Aligned_cols=100 Identities=14% Similarity=0.211 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhc---cccCCCeEEEe-----ecCCCCCC------C----CCcccHHHHHHHHHHHHHHcC---
Q 005023 451 KEYMEVAESAASFIRRHL---YDEQTHRLQHS-----FRNGPSKA------P----GFLDDYAFLISGLLDLYEFGS--- 509 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~---~d~~~g~l~~~-----~~~g~~~~------~----~~l~DyA~li~all~LYeaTg--- 509 (718)
.+.+..+..+.+++.+.+ ++..+.++.+. |.|+...+ . ..-+=+.+++.++..+.+..+
T Consensus 362 ~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~ 441 (641)
T COG3408 362 RELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEE 441 (641)
T ss_pred HHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccc
Confidence 467778888888887766 22333344442 33321111 1 112233457788888888777
Q ss_pred -ChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccccccc
Q 005023 510 -GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKE 552 (718)
Q Consensus 510 -d~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~ 552 (718)
-++|.+.|.++.+.....||.+ .+||+...++++...|+..
T Consensus 442 ~~~~~~~~a~~l~~~F~~~fw~~--~~f~dl~~~~~~~~~r~~~ 483 (641)
T COG3408 442 DAARLEKIARRLKESFEAKFWNP--TGFYDLALDDKDVPIRPNF 483 (641)
T ss_pred cHHHHHHHHHHHHHHHHHHhhCc--cchHhhhccCCCcccCccc
Confidence 5678899999999999999986 5688887776666666543
No 282
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=58.60 E-value=17 Score=33.64 Aligned_cols=19 Identities=11% Similarity=0.066 Sum_probs=13.1
Q ss_pred cCCcEEEE----cCCchhhhhhc
Q 005023 12 TRRTHFLI----NTCHWCHVMEV 30 (718)
Q Consensus 12 e~K~ii~y----~~C~wChvM~~ 30 (718)
.+|+++++ .||.+|.....
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~ 43 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELC 43 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHH
Confidence 46777553 58999987643
No 283
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=58.27 E-value=2.4e+02 Score=29.44 Aligned_cols=36 Identities=25% Similarity=0.164 Sum_probs=26.5
Q ss_pred CcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005023 247 FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILD 282 (718)
Q Consensus 247 FEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~ 282 (718)
.-+-+-.-|..+...+.+|.+|||+.|.+.|.++++
T Consensus 51 ~~~~~~~~a~a~~~lAlay~~Tgd~~YA~~a~~iL~ 86 (272)
T PF05426_consen 51 DYSRLQRDADAAYALALAYYLTGDEKYADKAAEILN 86 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334555677788999999999999999887777664
No 284
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=56.61 E-value=52 Score=31.28 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=48.0
Q ss_pred hcCCcE---EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCc
Q 005023 11 KTRRTH---FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 87 (718)
Q Consensus 11 ~e~K~i---i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~ 87 (718)
++.|.| ||.+|=.-|-.|++-.+ .+++.+..-.+...||++|-|+..+.|. .. -|.+|++=-.++
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~---~~a~~v~~~a~IY~vDi~~Vpdfn~~ye--------l~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILY---KIAEKVKNFAVIYLVDIDEVPDFNQMYE--------LY-DPCTVMFFFRNK 85 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHH---HHHHHHTTTEEEEEEETTTTHCCHHHTT--------S--SSEEEEEEETTE
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHH---HHHHHhhcceEEEEEEcccchhhhcccc--------cC-CCeEEEEEecCe
Confidence 567876 57899999999996444 4566676545555799999999888754 23 798887765666
Q ss_pred eee
Q 005023 88 PLM 90 (718)
Q Consensus 88 p~~ 90 (718)
.+.
T Consensus 86 hm~ 88 (133)
T PF02966_consen 86 HMM 88 (133)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 285
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=56.29 E-value=42 Score=33.92 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=21.4
Q ss_pred CCcEEEeCCCCceeecccccCCCCCCCcccHHHHHHHHH
Q 005023 76 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 114 (718)
Q Consensus 76 wP~~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~ 114 (718)
.|.++|++|+|+..+...| |.. .|+ .+-++|+.|.
T Consensus 117 ~r~~fiID~~G~I~~~~~~-~~~--~gr-~~~ell~~l~ 151 (203)
T cd03016 117 VRAVFIIDPDKKIRLILYY-PAT--TGR-NFDEILRVVD 151 (203)
T ss_pred eeEEEEECCCCeEEEEEec-CCC--CCC-CHHHHHHHHH
Confidence 3469999999998865544 211 122 4666666553
No 286
>PRK13271 treA trehalase; Provisional
Probab=54.81 E-value=3.8e+02 Score=31.82 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=65.9
Q ss_pred hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCCCC
Q 005023 413 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP 488 (718)
Q Consensus 413 ilt~WNgl~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~~~~ 488 (718)
|-++-|++++. .|++.++.+|+... ..+|.+.|.+..+.|.+.||+++.|.++.- .++++
T Consensus 337 iPVDLNALLy~ae~~LA~la~~lGd~~~------------A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~---- 400 (569)
T PRK13271 337 VPVDLNALMFKMEKILARASKAAGDNAM------------ANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHK---- 400 (569)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhCChhh------------HHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCC----
Confidence 33567888866 56667777776311 146889999999999999999877766543 22222
Q ss_pred CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCC
Q 005023 489 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT 540 (718)
Q Consensus 489 ~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~ 540 (718)
.-+ .+.+.+++=|+-=.-+ .+.|..+.+.+..+|.. .||.-.+.
T Consensus 401 --~r~-~~saa~f~PLwag~a~---~~qA~~Vv~~l~~~Ll~--pgGLpTt~ 444 (569)
T PRK13271 401 --VRN-QLTAAALFPLYVNAAA---KDRANKVAAATKTHLLQ--PGGLNTTS 444 (569)
T ss_pred --Eee-chhHHHHHhhhcCCCC---HHHHHHHHHHHHHhcCC--CCCccCCC
Confidence 122 2456666666632223 35677777777777765 36655543
No 287
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=54.71 E-value=1.3e+02 Score=37.28 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=44.3
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe
Q 005023 414 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 479 (718)
Q Consensus 414 lt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~ 479 (718)
+|+|-+++...|++.+..++.... ..+|.+.+..+.+.|.+.+||+++|.++..
T Consensus 560 l~sWMa~~a~~M~~IA~~L~~~d~------------~~ef~~~~~~i~~~l~~~hWdeedgfYyD~ 613 (801)
T PF03200_consen 560 LTSWMAFFALNMARIALELGKEDD------------AYEFFEHFEYISDALNKLHWDEEDGFYYDV 613 (801)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHHHHHhcCCcccCceeee
Confidence 689999999999999999986311 135779999999999999999988876654
No 288
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=53.02 E-value=3.6e+02 Score=30.51 Aligned_cols=127 Identities=11% Similarity=0.022 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC--------CCC------------CC-CcccHHHHHHHHHHHHHHcC
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--------SKA------------PG-FLDDYAFLISGLLDLYEFGS 509 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~--------~~~------------~~-~l~DyA~li~all~LYeaTg 509 (718)
++.|+.++-.++||++.... .|.|+....+|. +.. .. -.+--+.++-+|...+.+..
T Consensus 94 ~dllde~kwg~D~llkm~~~--~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k 171 (444)
T PF00759_consen 94 PDLLDEAKWGLDWLLKMQDS--DGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFK 171 (444)
T ss_dssp HHHHHHHHHHHHHHHHTBSC--TTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCC--CCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcc
Confidence 78999999999999976543 456666543331 100 01 11112344455555555544
Q ss_pred C--h----HHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 005023 510 G--T----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 583 (718)
Q Consensus 510 d--~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~ 583 (718)
+ + ++|+.|+++++.+.++. +.|+...... ....|.. -+-...++++-..|++.||+ ..
T Consensus 172 ~~d~~~A~~~L~~A~~~~~~a~~~~-----~~~~~~~~~~------~~~~Y~~--~~~~De~~wAA~~Ly~aTg~---~~ 235 (444)
T PF00759_consen 172 DFDPAYAAQCLKAAKEAYAFAKKNP-----GVYSDNPQPN------GGGFYNS--SGYEDELAWAAAELYRATGD---ES 235 (444)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHST-----THGGGTSTCT------TTTTSHC--S-SHHHHHHHHHHHHHHHT----HH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCC-----CcccCCcccc------cCCcccC--CCcccHHHHHHHHHHHhcCc---HH
Confidence 3 4 56788888887776532 3343322110 0011100 11223577788889999996 88
Q ss_pred HHHHHHHHHHHH
Q 005023 584 YRQNAEHSLAVF 595 (718)
Q Consensus 584 y~e~a~~~l~~~ 595 (718)
|++.+.+....+
T Consensus 236 Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 236 YLDYAKEYYDDL 247 (444)
T ss_dssp HHHHHHHHCCTS
T ss_pred HHHHHHHhHHhh
Confidence 999987666443
No 289
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=52.80 E-value=34 Score=34.44 Aligned_cols=17 Identities=6% Similarity=-0.148 Sum_probs=14.5
Q ss_pred CCcEEEeCCCCceeecc
Q 005023 76 WPLSVFLSPDLKPLMGG 92 (718)
Q Consensus 76 wP~~vfl~p~g~p~~~~ 92 (718)
+|.+++++|+|+.....
T Consensus 127 ~r~~fiID~~G~i~~~~ 143 (199)
T PTZ00253 127 YRGLFIIDPKGMLRQIT 143 (199)
T ss_pred EEEEEEECCCCEEEEEE
Confidence 68999999999988654
No 290
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=51.85 E-value=90 Score=33.19 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=23.7
Q ss_pred CCCcEEEeCCCCceeecccc-cCCCCCCCcccHHHHHHHH
Q 005023 75 GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKV 113 (718)
Q Consensus 75 GwP~~vfl~p~g~p~~~~~y-~p~~~~~~~~~f~~~L~~i 113 (718)
..|.+++++|+|+..+...| .+.. ...-++|+.|
T Consensus 187 a~R~tFIID~dG~I~~~~~~~~~~g-----r~v~eiLr~l 221 (261)
T PTZ00137 187 SHRASVLVDKAGVVKHVAVYDLGLG-----RSVDETLRLF 221 (261)
T ss_pred eecEEEEECCCCEEEEEEEeCCCCC-----CCHHHHHHHH
Confidence 47999999999999976544 2322 2566666654
No 291
>PRK13191 putative peroxiredoxin; Provisional
Probab=51.51 E-value=44 Score=34.28 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=25.2
Q ss_pred CCCcEEEeCCCCceeecccccCCCCCCCcccHHHHHHHHHH
Q 005023 75 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 115 (718)
Q Consensus 75 GwP~~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~~ 115 (718)
..|.++|++|+|+..+...|-.+ .|+ .+-++|+.|..
T Consensus 123 ~~r~tfIID~~G~Ir~~~~~~~~---~gr-~~~eilr~l~a 159 (215)
T PRK13191 123 TVRAVFIVDDKGTVRLILYYPME---IGR-NIDEILRAIRA 159 (215)
T ss_pred eeEEEEEECCCCEEEEEEecCCC---CCC-CHHHHHHHHHH
Confidence 37999999999998875444222 222 67888776643
No 292
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=50.86 E-value=59 Score=35.07 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=51.1
Q ss_pred CCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCC
Q 005023 406 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS 485 (718)
Q Consensus 406 ~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~ 485 (718)
..-+|+..- ..-|.-|+++++.+++ ++|.+++.+..+||++..+. +|+.-..|-....
T Consensus 33 ~~TiDN~aT----~~ei~fLa~~y~~t~d----------------~~y~~A~~kgl~ylL~aQyp--nGGWPQ~yP~~~~ 90 (289)
T PF09492_consen 33 NSTIDNDAT----TTEIRFLARVYQATKD----------------PRYREAFLKGLDYLLKAQYP--NGGWPQFYPLRGG 90 (289)
T ss_dssp SCE-GGGTT----HHHHHHHHHHHHHCG-----------------HHHHHHHHHHHHHHHHHS-T--TS--BSECS--SG
T ss_pred cCcccChhH----HHHHHHHHHHHHHhCC----------------hHHHHHHHHHHHHHHHhhCC--CCCCCccCCCCCC
Confidence 344566622 2457789999999987 89999999999999998886 6766665422111
Q ss_pred -CCCCCcccHH--HHHHHHHHHHHHcCCh
Q 005023 486 -KAPGFLDDYA--FLISGLLDLYEFGSGT 511 (718)
Q Consensus 486 -~~~~~l~DyA--~li~all~LYeaTgd~ 511 (718)
...-+.+|-| -++.-|.+.++..++-
T Consensus 91 Y~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 91 YHDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp GGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred CCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 1122334443 4667777777777765
No 293
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=49.44 E-value=3.3e+02 Score=32.38 Aligned_cols=138 Identities=10% Similarity=0.083 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeecC-CCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccC
Q 005023 455 EVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 533 (718)
Q Consensus 455 ~~A~~~~~~l~~~~~d~~~g~l~~~~~~-g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~ 533 (718)
+.|+++.....+.+. +|.+-..+.+ |....-+..|---+++.++-++|+.|+|..+++.-...+..+++.+.+..
T Consensus 313 ~~A~~iL~~fa~~~~---~GliPN~~~~~g~~p~YntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~- 388 (575)
T TIGR01561 313 DEAKEAILKFANLCK---RGLIPNNFIAFGGDPIYNGVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGN- 388 (575)
T ss_pred HHHHHHHHHHHHHhH---CCCCCCccCCCCCCccCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC-
Confidence 556666555554442 3554444333 22112234566678999999999999999888655555555555444321
Q ss_pred CccccCCCCCCccc-----cccccCC---------CCCCCChHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHHHH
Q 005023 534 GGYFNTTGEDPSVL-----LRVKEDH---------DGAEPSGNSVSVINLVRLASI---VAGSKSDYYRQNAEHSLAVFE 596 (718)
Q Consensus 534 Gg~f~t~~~~~~l~-----~r~k~~~---------D~a~PS~ns~~a~~LlrL~~l---t~~~~~~~y~e~a~~~l~~~~ 596 (718)
+|--..+.+ .++ ..+++.. +|+.---|+.+..+|..++.+ .|+. ...|.+.|+++-+.|.
T Consensus 389 -~~~i~~d~d-GLi~~g~~lTWMDa~~g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~-a~~y~~~A~~lk~~F~ 465 (575)
T TIGR01561 389 -DFAIGMDND-LIFHKGAPLTWMDAKVDERAVTPRAGAACEINALWYNALKTAEFLGNELGED-AESLEEKAAGVAKNFA 465 (575)
T ss_pred -CcEEEECCC-ccEeCCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHH
Confidence 111000000 111 1233322 233334566677776665444 4542 2568888877777775
Q ss_pred HHH
Q 005023 597 TRL 599 (718)
Q Consensus 597 ~~i 599 (718)
...
T Consensus 466 ~~F 468 (575)
T TIGR01561 466 EKF 468 (575)
T ss_pred Hhc
Confidence 443
No 294
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=47.85 E-value=63 Score=25.99 Aligned_cols=62 Identities=10% Similarity=-0.022 Sum_probs=35.9
Q ss_pred EEEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 16 HFLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 16 ii~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
++++.+|.+|+.+.- +.+..+-.|-.+.||..+......-|.+ ++..+..|+.+. ++|..++
T Consensus 3 Ly~~~~s~~~~~~~~-------~L~~~~l~~~~~~v~~~~~~~~~~~~~~----~~p~~~vP~l~~--~~~~~l~ 64 (74)
T cd03051 3 LYDSPTAPNPRRVRI-------FLAEKGIDVPLVTVDLAAGEQRSPEFLA----KNPAGTVPVLEL--DDGTVIT 64 (74)
T ss_pred EEeCCCCcchHHHHH-------HHHHcCCCceEEEeecccCccCCHHHHh----hCCCCCCCEEEe--CCCCEEe
Confidence 456689999988652 2344454566667775432222222332 467788998754 4566554
No 295
>PLN03012 Camelliol C synthase
Probab=47.51 E-value=1.5e+02 Score=36.39 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCC------------------------CCCCC--ChhHHHHHHHhhhhhcccCCCCCC
Q 005023 153 PQNALRLCAEQLSKSYDSRFGGFGS------------------------APKFP--RPVEIQMMLYHSKKLEDTGKSGEA 206 (718)
Q Consensus 153 ~~~~~~~~~~~l~~~~D~~~GGfg~------------------------apKFP--~~~~l~~Ll~~~~~~~~~~~~~~~ 206 (718)
..+.+.++++.|+..-.+ +|||+. .|-++ ....+..|........+. ..
T Consensus 511 ~~~~l~~av~wlL~mQn~-dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~----r~ 585 (759)
T PLN03012 511 DPEQLHDAVNILLSLQSK-NGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDH----RT 585 (759)
T ss_pred cHHHHHHHHHHHHhccCC-CCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCccc----ch
Confidence 345677777777766654 799754 12333 233455554433221110 01
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 005023 207 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 286 (718)
Q Consensus 207 ~~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~ 286 (718)
++....+.+.++-+.. .-.-+|||+ .+|.|-+. |--+..+.+++.+..-..+ ...++++++||++
T Consensus 586 ~~i~~~i~rAv~~L~~---~Q~~DGsW~-----G~Wgv~y~----YgT~~aL~aL~a~g~~~~~---~~~Irrav~fLls 650 (759)
T PLN03012 586 EEINAFIKKAAEYIEN---IQMLDGSWY-----GNWGICFT----YGTWFALAGLAAAGKTFND---CEAIRKGVHFLLA 650 (759)
T ss_pred hhhHHHHHHHHHHHHH---hcCCCCCCc-----ccccccCC----cHHHHHHHHHHHhCccCCC---cHHHHHHHHHHHH
Confidence 1122333344444333 123578888 58888543 6566666666554332223 3678999999997
Q ss_pred hccCCCCceeee
Q 005023 287 DMIGPGGEIFSA 298 (718)
Q Consensus 287 ~m~~p~Ggf~sa 298 (718)
.+.++||+..+
T Consensus 651 -~Q~~DGGWGEs 661 (759)
T PLN03012 651 -AQKDNGGWGES 661 (759)
T ss_pred -hcCCCCCcCCC
Confidence 57789998654
No 296
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=46.99 E-value=31 Score=26.47 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=26.2
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005023 371 DSSASASKLGMPLEKYLNILGECRRKLFD 399 (718)
Q Consensus 371 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 399 (718)
+..++|+.+|++...+......+.++|++
T Consensus 22 t~~eIa~~lg~s~~~V~~~~~~al~kLR~ 50 (50)
T PF04545_consen 22 TLEEIAERLGISRSTVRRILKRALKKLRK 50 (50)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHHHhcC
Confidence 56799999999999999999999999863
No 297
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=46.48 E-value=71 Score=35.61 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=46.6
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEee-c-CCCCCCC--
Q 005023 413 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-R-NGPSKAP-- 488 (718)
Q Consensus 413 ilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~-~-~g~~~~~-- 488 (718)
.-.+-|...|-.+.+.++.+||.... ++.....+++++++.. +|+++.+|.... . |..-+..
T Consensus 96 ~~~D~~~~fVL~vyr~~~~TGD~~fL------------~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D~TyD~~~~ 161 (365)
T PF04685_consen 96 AWKDLNPKFVLQVYRDYKWTGDRDFL------------KEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPDQTYDDWSM 161 (365)
T ss_dssp ---------------------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET---SSSTT-EE
T ss_pred ccccccccccccccccccccccchhh------------hhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCccccccCCe
Confidence 33455688899999999999983211 2344589999999987 555443443322 1 1111111
Q ss_pred -CCcccH-----HHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCcccc
Q 005023 489 -GFLDDY-----AFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 538 (718)
Q Consensus 489 -~~l~Dy-----A~li~all~LYeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~ 538 (718)
| ..-| ..++.|+.++.++-|++ +|.+.+++..+.+.+.+|+ |.||.
T Consensus 162 ~G-~say~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWn---Geyy~ 217 (365)
T PF04685_consen 162 YG-PSAYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWN---GEYYR 217 (365)
T ss_dssp EE-EEHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEE---TTEE-
T ss_pred eC-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhC---Hhhee
Confidence 1 1222 34567778888888985 4777788888888888986 55776
No 298
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=45.52 E-value=36 Score=28.15 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=35.4
Q ss_pred EEEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCC-CCceee
Q 005023 16 HFLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP-DLKPLM 90 (718)
Q Consensus 16 ii~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p-~g~p~~ 90 (718)
++++..|++|++.. .+....+=.|-.+-+|...++++ .+.+.+..|..++-+. +|++++
T Consensus 4 Ly~~~~~p~c~kv~-------~~L~~~gi~y~~~~~~~~~~~~~---------~~~~~~~vP~l~~~~~~~~~~l~ 63 (77)
T cd03040 4 LYQYKTCPFCCKVR-------AFLDYHGIPYEVVEVNPVSRKEI---------KWSSYKKVPILRVESGGDGQQLV 63 (77)
T ss_pred EEEcCCCHHHHHHH-------HHHHHCCCceEEEECCchhHHHH---------HHhCCCccCEEEECCCCCccEEE
Confidence 35678999999976 23444444466665654433221 1367788998765432 466665
No 299
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=45.51 E-value=73 Score=35.54 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=10.3
Q ss_pred CcchHHHHHHHHHHHHHHHHccCChHHH----HHHHHHHHHHHH
Q 005023 247 FEKMLYDQGQLANVYLDAFSLTKDVFYS----YICRDILDYLRR 286 (718)
Q Consensus 247 FEKmLyDnA~ll~~ya~Ay~~t~~~~y~----~~A~~~~~~l~~ 286 (718)
+..+.-.|...|..-.+.|+.|||..|+ ..++++++|+.+
T Consensus 94 ~~~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~ 137 (365)
T PF04685_consen 94 VYAWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS 137 (365)
T ss_dssp -----------------------------EHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHh
Confidence 3445545777888888899999998876 467999999998
No 300
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=43.76 E-value=1.3e+02 Score=33.62 Aligned_cols=143 Identities=21% Similarity=0.268 Sum_probs=73.9
Q ss_pred hHHHH-----HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecC------CCC
Q 005023 417 WNGLV-----ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN------GPS 485 (718)
Q Consensus 417 WNgl~-----I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~------g~~ 485 (718)
|..-| |+-|++||..++| +.||..|.++..-- .+.. .+|++...+.+ .-|
T Consensus 418 W~SAMaQGhaISvL~RAy~h~~D----------------e~yL~sAa~al~py--k~~S-~dgGV~a~Fm~K~~WYEEYP 478 (594)
T KOG3760|consen 418 WHSAMAQGHAISVLTRAYKHFND----------------EKYLKSAAKALKPY--KINS-SDGGVRAEFMGKNIWYEEYP 478 (594)
T ss_pred hHhhhhcccchHHHHHHHHhcCc----------------HHHHHHHHhhcCCe--Eeec-CCCceEEEEccccchhhhcC
Confidence 76655 8999999999998 78999888775321 1222 23444443332 222
Q ss_pred CCC--CCcccHHHHHHHHHHHHHHc--CChHHHHHHHHHHH-------HHHHhcccccCCccccCCC---CCCccccccc
Q 005023 486 KAP--GFLDDYAFLISGLLDLYEFG--SGTKWLVWAIELQN-------TQDELFLDREGGGYFNTTG---EDPSVLLRVK 551 (718)
Q Consensus 486 ~~~--~~l~DyA~li~all~LYeaT--gd~~~L~~A~~L~~-------~~~~~F~D~~~Gg~f~t~~---~~~~l~~r~k 551 (718)
..+ =.|+.+. +.||-||... -..+--..|.+|.. .|+- .+|.-+|.-|+--. .-.+-+.|+
T Consensus 479 TTP~SfVLNGF~---YSLiGLYDL~eTa~~Kia~EA~~Ly~~Gm~SLK~mLp-LyDTGSGTiYDLRH~~LG~APNLARW- 553 (594)
T KOG3760|consen 479 TTPGSFVLNGFL---YSLIGLYDLDETARAKIAQEAQELYSAGMRSLKQMLP-LYDTGSGTIYDLRHVALGTAPNLARW- 553 (594)
T ss_pred CCCcceeehhHH---HHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhe-eeecCCCceeehhhhhhccCcccccc-
Confidence 222 2344554 4555555442 22222244444443 3333 34766676665321 111112333
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 005023 552 EDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 594 (718)
Q Consensus 552 ~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~ 594 (718)
| -.+..+..|..|+.+-. ++.+.+.|++-..+
T Consensus 554 ---D-----YHatHvnqL~llatId~---dpv~~~ta~RWkgY 585 (594)
T KOG3760|consen 554 ---D-----YHATHVNQLKLLATIDK---DPVLSKTADRWKGY 585 (594)
T ss_pred ---h-----hhhHHHHHHHHHhhccc---cHHHHHHHHHHHhh
Confidence 1 12456666777777643 36666666555444
No 301
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=43.69 E-value=36 Score=27.15 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=26.7
Q ss_pred cCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005023 369 LNDSSASASKLGMPLEKYLNILGECRRKLF 398 (718)
Q Consensus 369 ~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~ 398 (718)
..+..++|+.+|++...+.+.|..+-+||+
T Consensus 23 ~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 23 RITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999988886
No 302
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=43.12 E-value=6.6e+02 Score=30.14 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQD 525 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~ 525 (718)
+.|...|.++.+.+.++++..++|.+.+.+.+ ......| -+.+...+ =-+--..|++.+...+.+.+.+.
T Consensus 443 ~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~---~~~~~vD-asll~l~~-fg~i~~~D~~~~~t~~~I~~~L~ 512 (612)
T COG3387 443 EHWRKTADELKEAVLRRGYAEDGGYFVRSLGR---KPDDTVD-ASLLGLVL-FGFIPPDDPRILATVEAIERELL 512 (612)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeeehhcCC---Ccccccc-HHHhhccc-cCccCCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999998766655554432 1111111 11111111 11223467777777777666553
No 303
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=42.56 E-value=6.2 Score=35.20 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=18.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005023 257 LANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 296 (718)
Q Consensus 257 ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~ 296 (718)
....++.++...+++.+.+.++++++||.+.. .++|||-
T Consensus 28 ~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q-~~dG~w~ 66 (109)
T PF13243_consen 28 VTAALILALAAAGDAAVDEAIKKAIDWLLSHQ-NPDGGWG 66 (109)
T ss_dssp -------------TS-SSBSSHHHHHHHHH----TTS--S
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhc-CCCCCCC
Confidence 33444455555678889999999999999954 7788874
No 304
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=42.37 E-value=73 Score=26.60 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=12.4
Q ss_pred EEEcCCchhhhhhccc
Q 005023 17 FLINTCHWCHVMEVES 32 (718)
Q Consensus 17 i~y~~C~wChvM~~es 32 (718)
+....|+||..+++..
T Consensus 4 f~d~~Cp~C~~~~~~l 19 (98)
T cd02972 4 FFDPLCPYCYLFEPEL 19 (98)
T ss_pred EECCCCHhHHhhhHHH
Confidence 4457999999998643
No 305
>PRK13189 peroxiredoxin; Provisional
Probab=41.81 E-value=74 Score=32.80 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=23.4
Q ss_pred CCCcEEEeCCCCceeecccccCCCCCCCcccHHHHHHHHHH
Q 005023 75 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 115 (718)
Q Consensus 75 GwP~~vfl~p~g~p~~~~~y~p~~~~~~~~~f~~~L~~i~~ 115 (718)
..|.++|++|+|+......| |.. .| ..+-++|+.|..
T Consensus 125 ~~r~tfIID~~G~Ir~~~~~-~~~--~g-r~~~eilr~l~a 161 (222)
T PRK13189 125 TVRAVFIIDPKGIIRAILYY-PQE--VG-RNMDEILRLVKA 161 (222)
T ss_pred ceeEEEEECCCCeEEEEEec-CCC--CC-CCHHHHHHHHHH
Confidence 57999999999998764432 211 11 256676665543
No 306
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=40.46 E-value=1.1e+02 Score=24.94 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=36.9
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
+++.+|.||+... -+.+..+-.|=.+.||...++ .-|++ ++..+..|+.+ +.||..++
T Consensus 4 y~~~~~p~~~rv~-------~~L~~~gl~~e~~~v~~~~~~---~~~~~----~np~~~vP~L~--~~~g~~l~ 61 (71)
T cd03060 4 YSFRRCPYAMRAR-------MALLLAGITVELREVELKNKP---AEMLA----ASPKGTVPVLV--LGNGTVIE 61 (71)
T ss_pred EecCCCcHHHHHH-------HHHHHcCCCcEEEEeCCCCCC---HHHHH----HCCCCCCCEEE--ECCCcEEe
Confidence 4568899998754 234444556777888876543 22322 36788899874 34677664
No 307
>PLN02613 endoglucanase
Probab=39.61 E-value=6.8e+02 Score=29.27 Aligned_cols=119 Identities=13% Similarity=0.003 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCC-----------CC----------CCcccHHHHHHHHHHHHHHcC
Q 005023 451 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK-----------AP----------GFLDDYAFLISGLLDLYEFGS 509 (718)
Q Consensus 451 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~-----------~~----------~~l~DyA~li~all~LYeaTg 509 (718)
+..|+.++-..+|+++.... .+.+++.-.+|... .. .-.+--+.++.+|...+.+-.
T Consensus 112 ~d~ldeikw~lD~llkm~~~--~~~~~~QVGdg~~dH~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vfk 189 (498)
T PLN02613 112 GYLRSAIRWGTDFILRAHTS--PTTLYTQVGDGNADHQCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVFK 189 (498)
T ss_pred hHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCccccccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999976533 35565543333210 00 111222345555655565554
Q ss_pred --ChH----HHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 005023 510 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 583 (718)
Q Consensus 510 --d~~----~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~ 583 (718)
|+. .|+.|+++++....+ .|.|.... +.+.+ .-+-.-.++++-..|+..||+ ..
T Consensus 190 ~~D~~yA~~~L~~Ak~ly~~a~~~-----~g~y~~~~-----------~~y~s-~s~~~DEl~WAAawLy~aTGd---~~ 249 (498)
T PLN02613 190 DVDSSYSSKLLNHARSLFEFADKY-----RGSYQASC-----------PFYCS-YSGYQDELLWAAAWLYKATGE---KK 249 (498)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCcCCCC-----------Ccccc-cCccchHHHHHHHHHHHHhCC---HH
Confidence 444 578888888777642 23232210 00000 000012467777889999996 78
Q ss_pred HHHHHHHH
Q 005023 584 YRQNAEHS 591 (718)
Q Consensus 584 y~e~a~~~ 591 (718)
|.+.+...
T Consensus 250 Yl~~~~~~ 257 (498)
T PLN02613 250 YLNYVISN 257 (498)
T ss_pred HHHHHHhc
Confidence 98887553
No 308
>PRK13271 treA trehalase; Provisional
Probab=39.55 E-value=77 Score=37.51 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCCC
Q 005023 500 GLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 541 (718)
Q Consensus 500 all~LYeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~ 541 (718)
-|.++++..|+. .|.++|.++.+.+.+.|||++.|.||+...
T Consensus 351 ~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl 396 (569)
T PRK13271 351 ILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYDL 396 (569)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEC
Confidence 344566677765 688999999999999999999898888643
No 309
>PLN02993 lupeol synthase
Probab=39.54 E-value=1.8e+02 Score=35.81 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CCeEEEeecCCCC---------CCC
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-THRLQHSFRNGPS---------KAP 488 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~-~g~l~~~~~~g~~---------~~~ 488 (718)
++++.||.+++.. +++-...+++.+||++.....+ .|-+...+++..+ ...
T Consensus 422 a~a~qAl~~agl~-------------------~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gy 482 (763)
T PLN02993 422 GFAIQALLASDLS-------------------DETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGW 482 (763)
T ss_pred HHHHHHHHHcCCC-------------------cccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCC
Confidence 5788899888721 1345678899999988766311 1221112333222 123
Q ss_pred CCcccHHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccccccc--------C
Q 005023 489 GFLDDYAFLISGLLDLYEFGS-------GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKE--------D 553 (718)
Q Consensus 489 ~~l~DyA~li~all~LYeaTg-------d~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k~--------~ 553 (718)
...||-|..+.|++.|..... +.+-+..|.+..-.+. . .+|||-.-..+.....+...+ .
T Consensus 483 p~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQ----n-~dGG~aafe~~~~~~~le~ln~ae~f~~~m 557 (763)
T PLN02993 483 QVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQ----S-ENGGVTAWEPVRAYKWLELLNPTDFFANTM 557 (763)
T ss_pred CcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhc----c-CCCCEEeeeCCCchhHHHcCCHHHhhcCcc
Confidence 456889999998777776543 2244555555544433 2 256653211111110111111 1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005023 554 HDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 597 (718)
Q Consensus 554 ~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~~~~~ 597 (718)
-|-..+-..+..+.+|..+.....+...++.....++.++.+..
T Consensus 558 iD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~ 601 (763)
T PLN02993 558 VEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIES 601 (763)
T ss_pred cCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHH
Confidence 24566667776677776665433221112223444555555443
No 310
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=38.86 E-value=58 Score=33.67 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=36.6
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005023 332 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 399 (718)
Q Consensus 332 ~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 399 (718)
+..++..+||+.... | .+..++|+.+|++.+.+.++...++.||+.
T Consensus 181 er~vl~l~ygl~~~~---------------~-------~t~~EIA~~lgis~~~V~q~~~~al~kLr~ 226 (238)
T TIGR02393 181 ERKVLRMRYGLLDGR---------------P-------HTLEEVGKEFNVTRERIRQIESKALRKLRH 226 (238)
T ss_pred HHHHHHHHhCCCCCC---------------C-------ccHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Confidence 456777788874321 1 246789999999999999999999999986
No 311
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=38.34 E-value=1.9e+02 Score=30.18 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCCCCCCChhHHHHHHHhhhhhcccCCCCCCHHHHHHHHHHHHHHHhCCCcccCCCcE
Q 005023 154 QNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGF 233 (718)
Q Consensus 154 ~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~gGi~D~v~GGF 233 (718)
...+.++...|.+.. ++...|..+.++-+.....+ +......+...|+.++. +.+|+.
T Consensus 112 ~~~i~kA~~~L~~~~----------~~~~~~Y~lAl~aYAL~la~-------~~~~~~~~~~~L~~~a~-----~~~~~~ 169 (246)
T PF07678_consen 112 ENAINKALNYLERHL----------DNIQDPYTLALVAYALALAG-------DSPQASKLLNKLNSMAT-----TEGGLR 169 (246)
T ss_dssp HHHHHHHHHHHHHHH----------GCTSSHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHCHCE-----ETTTTC
T ss_pred HHHHHHHHHHHHHhc----------cccCCHHHHHHHHHHHHhhc-------ccchHHHHHHHHHHhhh-----hccccC
Confidence 456777777777653 34556665655444333221 12333444455555543 335555
Q ss_pred EEEecCCCCCCCCCc---c---hHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeecc
Q 005023 234 HRYSVDERWHVPHFE---K---MLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 300 (718)
Q Consensus 234 ~RYsvD~~W~vPHFE---K---mLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~D 300 (718)
| |..+.....+..- - -+=-.|..|.++.+. ++ ...+..++.||.+. +.+.|||.|.+|
T Consensus 170 ~-W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~----~~---~~~~~~iv~WL~~q-r~~~Ggf~STQd 233 (246)
T PF07678_consen 170 Y-WSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR----GD---LEEASPIVRWLISQ-RNSGGGFGSTQD 233 (246)
T ss_dssp E-E-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH----TC---HHHHHHHHHHHHHC-TTTTSSTSSHHH
T ss_pred c-ccCCcccccccccccccchHHHHHHHHHHHHHHhc----cc---HHHHHHHHHHHHHh-cCCCCccCcHHH
Confidence 5 6766655433211 0 111133344444443 44 45688999999984 466899999876
No 312
>PRK10137 alpha-glucosidase; Provisional
Probab=37.02 E-value=5.2e+02 Score=31.96 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=38.3
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE
Q 005023 415 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH 478 (718)
Q Consensus 415 t~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~ 478 (718)
.+|=..+-..|++.++++|+... ..+|.+.|.++.+.|.+.+|+++.|.++.
T Consensus 581 NsyLy~a~~~LA~LAe~LG~~e~------------A~~~~~~A~~Lr~aIn~~~WDee~GfY~D 632 (786)
T PRK10137 581 ASYMYSDNHYLAEMATILGKPEE------------AKRYRQLAQQLADYINTCMFDETTGFYYD 632 (786)
T ss_pred HHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHHccCCcCCeEEE
Confidence 33444444689999999986311 14688899999999999999988776653
No 313
>PLN02909 Endoglucanase
Probab=37.02 E-value=7.3e+02 Score=28.91 Aligned_cols=141 Identities=11% Similarity=0.002 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCC--CCCc----
Q 005023 418 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFL---- 491 (718)
Q Consensus 418 Ngl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~--~~~l---- 491 (718)
-+..++.|+.++..+++.- ...| ..+..|+.++-..+||++... .+|.+++.-.++..+. .+..
T Consensus 95 ~a~s~~~L~w~~~~y~~~~-------~~~g-~~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~ 164 (486)
T PLN02909 95 MAFTVTTLAWSTLAYEKEL-------RATG-ELENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMK 164 (486)
T ss_pred hHHHHHHHHHHHHHhHHHH-------hhcC-ChHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhcc
Confidence 3555666665555444311 0112 137899999999999997643 3578888644432110 0111
Q ss_pred ---------------ccHHHHHHHHHHHHHHcC--ChH----HHHHHHHHHHHHHHhc--ccccCCccccCCCCCCcccc
Q 005023 492 ---------------DDYAFLISGLLDLYEFGS--GTK----WLVWAIELQNTQDELF--LDREGGGYFNTTGEDPSVLL 548 (718)
Q Consensus 492 ---------------~DyA~li~all~LYeaTg--d~~----~L~~A~~L~~~~~~~F--~D~~~Gg~f~t~~~~~~l~~ 548 (718)
+--+.++-+|...+.+.. |+. .|+.|+++++.+..+= ++. ..+||....+
T Consensus 165 ~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~-~~~~y~s~s~------ 237 (486)
T PLN02909 165 TPRTVLEIDEKTPGTEIAAETAAAMAASSMVFRHVDHKYSRRLLNKAKLLFKFAKAHKGTYDG-ECPFYCSYSG------ 237 (486)
T ss_pred CCceeEecCCCCCCcHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCcCC-CCCccccCCC------
Confidence 112344555555555544 444 5888888888776531 000 0112221100
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 005023 549 RVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEH 590 (718)
Q Consensus 549 r~k~~~D~a~PS~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~ 590 (718)
-+-.++++-..|+..||+ ..|.+.+..
T Consensus 238 ------------y~DEl~WAAawLy~aTgd---~~Yl~~~~~ 264 (486)
T PLN02909 238 ------------YNDELLWAATWLYKATKK---QMYLKYIKH 264 (486)
T ss_pred ------------cchHHHHHHHHHHHHhCC---HHHHHHHHh
Confidence 023577777788899986 678876643
No 314
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=36.81 E-value=58 Score=37.97 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=38.2
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005023 332 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 400 (718)
Q Consensus 332 ~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 400 (718)
+..++..+||+.... ..++.++++.+|++.+.+.++-..+..||+..
T Consensus 452 Er~VI~lRyGL~~~e----------------------~~TL~EIa~~lGVSrERVRQIe~kAL~KLR~~ 498 (509)
T PRK05901 452 EAGVIRMRFGLTDGQ----------------------PKTLDEIGQVYGVTRERIRQIESKTLRKLRHP 498 (509)
T ss_pred HHHHHHHHhhccCCC----------------------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 567888899995321 13578999999999999999999999999863
No 315
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=36.77 E-value=3.1e+02 Score=29.35 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccCCCCceeeecc
Q 005023 276 ICRDILDYLRRDMIGPGGEIFSAED 300 (718)
Q Consensus 276 ~A~~~~~~l~~~m~~p~Ggf~sa~D 300 (718)
.|..++.||.+. +...|||.|++|
T Consensus 263 ~a~~iv~WL~~q-r~~~Ggf~sTQd 286 (297)
T cd02896 263 YANPIARWLTEQ-RNYGGGFGSTQD 286 (297)
T ss_pred hHHHHHHHHHhc-CCCCCCeehHHH
Confidence 588999999985 466899999886
No 316
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=36.35 E-value=48 Score=32.09 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCchhhhhhccccCcHHHHHHhhcccEEE-EecCCCCcchHHHHHHHHHHhcCC
Q 005023 21 TCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGG 73 (718)
Q Consensus 21 ~C~wChvM~~esf~d~~va~~ln~~Fv~v-kvD~ee~pd~d~~y~~~~q~~~g~ 73 (718)
||.+|+.+. ++|+.+=|.+ .+|.+..++. ++.++.++|.
T Consensus 15 t~~~C~~ak----------~iL~~~~V~~~e~DVs~~~~~----~~EL~~~~g~ 54 (147)
T cd03031 15 TFEDCNNVR----------AILESFRVKFDERDVSMDSGF----REELRELLGA 54 (147)
T ss_pred cChhHHHHH----------HHHHHCCCcEEEEECCCCHHH----HHHHHHHhCC
Confidence 899998754 4666554443 3455554433 3334444453
No 317
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=35.46 E-value=76 Score=29.38 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=31.5
Q ss_pred cCCchhhhhhccccCcHHHHHHhh-cccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCcee
Q 005023 20 NTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 89 (718)
Q Consensus 20 ~~C~wChvM~~esf~d~~va~~ln-~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~ 89 (718)
+||..|+.--. .++ +..+.+. .++..|-|..+...... . ++ ...++|.-++.||+++..
T Consensus 34 ~~Cp~C~~~~~-~l~--~~~~~~~~~~v~vv~V~~~~~~~~~-~---~~----~~~~~~~p~~~D~~~~~~ 93 (149)
T cd02970 34 FGCPFCREYLR-ALS--KLLPELDALGVELVAVGPESPEKLE-A---FD----KGKFLPFPVYADPDRKLY 93 (149)
T ss_pred CCChhHHHHHH-HHH--HHHHHHHhcCeEEEEEeCCCHHHHH-H---HH----HhcCCCCeEEECCchhHH
Confidence 78999986332 121 2222222 34555566655432222 1 21 234677789999997754
No 318
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=34.56 E-value=52 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=22.8
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHH
Q 005023 371 DSSASASKLGMPLEKYLNILGECRRKL 397 (718)
Q Consensus 371 ~~~~~a~~~g~~~~~~~~~l~~~r~~L 397 (718)
+..++|+.+|+++..+...+..++++|
T Consensus 28 s~~eIa~~l~~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 28 SYAEIAEILGISESTVKRRLRRARKKL 54 (54)
T ss_dssp -HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 457899999999999999999999876
No 319
>PRK07921 RNA polymerase sigma factor SigB; Reviewed
Probab=34.35 E-value=1e+02 Score=33.73 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=40.7
Q ss_pred HHHHhc----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005023 325 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 400 (718)
Q Consensus 325 i~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 400 (718)
|.++|. .+..++..+||+.... ..++.++++.+|++.+.+.++-..+..||...
T Consensus 256 l~~~L~~L~eREr~Vl~~rygl~~~~----------------------~~Tl~eIa~~lgvS~eRVrQIe~~Al~KLr~~ 313 (324)
T PRK07921 256 IRSVLATLDEREQQVIRLRFGLDDGQ----------------------PRTLDQIGKLFGLSRERVRQIEREVMSKLRNG 313 (324)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCC----------------------CcCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Confidence 445543 2466888889985321 13578999999999999999999999999863
No 320
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=34.26 E-value=1.2e+02 Score=23.34 Aligned_cols=59 Identities=14% Similarity=0.003 Sum_probs=36.0
Q ss_pred EEEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 16 HFLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 16 ii~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
++++.+|++|++... +.+..+-.|-.+.++..+.+.. .+. ..++.+..|+.++ +|..++
T Consensus 3 ly~~~~~~~~~~~~~-------~l~~~~i~~~~~~~~~~~~~~~--~~~----~~~~~~~~P~l~~---~~~~~~ 61 (71)
T cd00570 3 LYYFPGSPRSLRVRL-------ALEEKGLPYELVPVDLGEGEQE--EFL----ALNPLGKVPVLED---GGLVLT 61 (71)
T ss_pred EEeCCCCccHHHHHH-------HHHHcCCCcEEEEeCCCCCCCH--HHH----hcCCCCCCCEEEE---CCEEEE
Confidence 345689999997552 3445565677777776554332 222 2467888996543 256553
No 321
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=34.25 E-value=59 Score=30.16 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.9
Q ss_pred CCCcEEEeCCCCceeec
Q 005023 75 GWPLSVFLSPDLKPLMG 91 (718)
Q Consensus 75 GwP~~vfl~p~g~p~~~ 91 (718)
+.|.+++++++|++.+.
T Consensus 129 ~~p~~fvid~~g~i~~~ 145 (149)
T cd02970 129 QLPGVFVIGPDGTILFA 145 (149)
T ss_pred ccceEEEECCCCeEEEE
Confidence 68999999999998763
No 322
>PRK05949 RNA polymerase sigma factor; Validated
Probab=34.14 E-value=1.1e+02 Score=33.69 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=37.8
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005023 332 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 399 (718)
Q Consensus 332 ~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 399 (718)
+..++.-.||+..... .+.+++++.+|++.+.++.++..++++|++
T Consensus 271 er~Vi~lr~gl~~~e~----------------------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr~ 316 (327)
T PRK05949 271 QREVLTLRFGLEDGKE----------------------LSLAKVGERLNLSRERVRQLEHQALAHLRR 316 (327)
T ss_pred HHHHHHHHhccCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4668888898864221 357899999999999999999999999987
No 323
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=33.00 E-value=1.5e+02 Score=24.48 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=38.5
Q ss_pred EEEcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeCCCCceee
Q 005023 17 FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 90 (718)
Q Consensus 17 i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~ 90 (718)
+++.+|+||++.. -+.+..+=.|-.+.|+..++ ...+. .+.+.+-.|..+ +||..++
T Consensus 2 y~~~~Sp~~~kv~-------~~l~~~~i~~~~~~v~~~~~---~~~~~----~~~p~~~vPvL~---~~g~~l~ 58 (75)
T PF13417_consen 2 YGFPGSPYSQKVR-------LALEEKGIPYELVPVDPEEK---RPEFL----KLNPKGKVPVLV---DDGEVLT 58 (75)
T ss_dssp EEETTSHHHHHHH-------HHHHHHTEEEEEEEEBTTST---SHHHH----HHSTTSBSSEEE---ETTEEEE
T ss_pred CCcCCChHHHHHH-------HHHHHcCCeEEEeccCcccc---hhHHH----hhcccccceEEE---ECCEEEe
Confidence 5789999999975 24555555677778887765 22222 236778899876 4477775
No 324
>PLN02710 farnesyltranstransferase subunit beta
Probab=32.98 E-value=3.9e+02 Score=30.67 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhccCCCCceeee
Q 005023 276 ICRDILDYLRRDMIGPGGEIFSA 298 (718)
Q Consensus 276 ~A~~~~~~l~~~m~~p~Ggf~sa 298 (718)
....+++||.+ .+..+|||-..
T Consensus 192 ~~e~~~~~I~s-cQ~~dGGF~g~ 213 (439)
T PLN02710 192 LVKGVGDYILS-CQTYEGGIGGE 213 (439)
T ss_pred hHHHHHHHHHH-hCCCCCCCCCC
Confidence 36789999998 67789999543
No 325
>PRK13272 treA trehalase; Provisional
Probab=32.47 E-value=7.6e+02 Score=29.19 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=60.7
Q ss_pred chHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCCCCCCc
Q 005023 416 SWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGFL 491 (718)
Q Consensus 416 ~WNgl~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~~~~~~l 491 (718)
+-|+++.. .|++.++.+|+... ..+|.+.|.+..+.|.+.||++ .|.++.- .+.++.
T Consensus 341 DLNalL~~~e~~LA~~~~~lG~~~~------------a~~~~~~A~~r~~aI~~~lWde-~G~~~DYD~~~~~~------ 401 (542)
T PRK13272 341 DLNSLLYHLERTLAQACASSGLAAC------------SQDYAALAQQRKQAIDAHLWNP-AGYYADYDWQTRTL------ 401 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhccCc-CceEEeeccCCCCc------
Confidence 46777755 66777777775211 1568899999999999999996 6655442 233322
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccC
Q 005023 492 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNT 539 (718)
Q Consensus 492 ~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~t 539 (718)
.++ +.+.+++=|+-=.-++ +.|..+.+.+...|.. .||.-.+
T Consensus 402 ~~~-~s~a~f~PLwag~a~~---~~a~~l~~~l~~~~l~--~gGlpTt 443 (542)
T PRK13272 402 SEQ-VTAAALYPLFAGLASD---DRAKRTADSVRAQLLR--PGGLATT 443 (542)
T ss_pred ccc-ccHHHHHHHHcCCCCH---HHHHHHHHHHHHhccC--CCCcCCC
Confidence 223 3367777776432232 4566677766666643 3665544
No 326
>PRK07405 RNA polymerase sigma factor SigD; Validated
Probab=32.30 E-value=1.2e+02 Score=33.12 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=37.3
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005023 332 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 399 (718)
Q Consensus 332 ~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 399 (718)
+..++.-.||+.... ..+++++++.+|++.+.++++...++.||++
T Consensus 261 er~Vi~lr~gl~~~~----------------------~~Tl~EIa~~lgiS~erVRqi~~rAl~kLr~ 306 (317)
T PRK07405 261 QKEVIALRFGLEDGQ----------------------PLTLAKIGERLNISRERVRQIEREALSKLRK 306 (317)
T ss_pred HHHHHHHHhhcCCCC----------------------CcCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 456788888885321 1357899999999999999999999999987
No 327
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=31.30 E-value=3.9e+02 Score=33.18 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcC--Ch--HHHHHHHHHHHHHHHhcccccCCccccCCCCCC
Q 005023 495 AFLISGLLDLYEFGS--GT--KWLVWAIELQNTQDELFLDREGGGYFNTTGEDP 544 (718)
Q Consensus 495 A~li~all~LYeaTg--d~--~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~ 544 (718)
|++...++.+...-+ |+ +|.+.+..|.+.+.+..||++.|.||+......
T Consensus 565 a~~a~~M~~IA~~L~~~d~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~~~~~~ 618 (801)
T PF03200_consen 565 AFFALNMARIALELGKEDDAYEFFEHFEYISDALNKLHWDEEDGFYYDVGLHPD 618 (801)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcccCceeeeccccc
Confidence 444555555554443 33 356999999999999999999999998654433
No 328
>PRK07598 RNA polymerase sigma factor SigC; Validated
Probab=31.00 E-value=1e+02 Score=34.99 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=41.7
Q ss_pred HHHHHhc----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005023 324 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 399 (718)
Q Consensus 324 Ei~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 399 (718)
+|..+|. .+..++.-.|++..... .+.+++++.+|++.+.++.++..++.||++
T Consensus 343 ~L~~~L~~L~~reR~VI~LRygl~d~~~----------------------~Tl~EIA~~LGvS~erVRqie~rAl~KLR~ 400 (415)
T PRK07598 343 DLQHLLADLTSRERDVIRMRFGLADGHT----------------------YSLAEIGRALDLSRERVRQIESKALQKLRQ 400 (415)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 3555554 24567777888754322 357899999999999999999999999986
Q ss_pred h
Q 005023 400 V 400 (718)
Q Consensus 400 ~ 400 (718)
.
T Consensus 401 ~ 401 (415)
T PRK07598 401 P 401 (415)
T ss_pred h
Confidence 4
No 329
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393).
Probab=30.72 E-value=1e+02 Score=33.10 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=39.1
Q ss_pred HHHHhc----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005023 325 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 398 (718)
Q Consensus 325 i~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~ 398 (718)
|.+++. .+..++...||+... ++ .+.+++|+.+|++.+.++.++..+++||+
T Consensus 243 L~~~L~~L~~rer~Vi~lr~gl~~~---------------~~-------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr 298 (298)
T TIGR02997 243 LESLLAELTPRERQVLRLRFGLDGG---------------EP-------LTLAEIGRRLNLSRERVRQIEAKALRKLR 298 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCC---------------CC-------cCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 555543 346688888988522 11 35789999999999999999999998873
No 330
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=30.07 E-value=4.5e+02 Score=31.75 Aligned_cols=140 Identities=15% Similarity=0.179 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEee-c--CCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccc
Q 005023 455 EVAESAASFIRRHLYDEQTHRLQHSF-R--NGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 531 (718)
Q Consensus 455 ~~A~~~~~~l~~~~~d~~~g~l~~~~-~--~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~ 531 (718)
+.|+....++.++. +.|++.|.+ . +|.+ .-+..|.-=..|..+.+.+..|+|..+++........+.+.+.-
T Consensus 303 elArg~L~~~a~~~---~~GkIPhe~~~~~~~~~-~Y~tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~- 377 (641)
T COG3408 303 ELARGTLNTLARYS---EPGKIPHEILLSIPGEP-YYNTVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILK- 377 (641)
T ss_pred HHHHHHHHHHHhhc---cCCCCcchhhhcCCCcc-eeccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-
Confidence 67788887777773 358898875 2 2322 22344555677888889999999999988777666666555421
Q ss_pred cCCcc-ccCCCCC--Cc-cccccccCCCC---------CCCChHHH---HHHHHHHHHHHhCC-CCchHHHHHHHHHHHH
Q 005023 532 EGGGY-FNTTGED--PS-VLLRVKEDHDG---------AEPSGNSV---SVINLVRLASIVAG-SKSDYYRQNAEHSLAV 594 (718)
Q Consensus 532 ~~Gg~-f~t~~~~--~~-l~~r~k~~~D~---------a~PS~ns~---~a~~LlrL~~lt~~-~~~~~y~e~a~~~l~~ 594 (718)
. +.+ |.+..+. ++ -...+++..+. .----|++ +..++.+++.+.+. .+.+.|.+.|+++.+.
T Consensus 378 ~-~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~~~~~~~~a~~l~~~ 456 (641)
T COG3408 378 G-FDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEEDAARLEKIARRLKES 456 (641)
T ss_pred c-CCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 1 111 2221110 00 00111111111 11123555 56678888888871 1136788888888888
Q ss_pred HHHHHH
Q 005023 595 FETRLK 600 (718)
Q Consensus 595 ~~~~i~ 600 (718)
|.....
T Consensus 457 F~~~fw 462 (641)
T COG3408 457 FEAKFW 462 (641)
T ss_pred HHHHhh
Confidence 766553
No 331
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=29.38 E-value=1.1e+02 Score=32.54 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=38.4
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHH
Q 005023 371 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 430 (718)
Q Consensus 371 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~ 430 (718)
+.+++|+.+|+++..++..+..+|++|.+.+.. ..+ +. .=+.-++.++..|.+
T Consensus 126 s~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~~~~-~~~--~~----~~~~~~~~~f~~a~~ 178 (281)
T TIGR02957 126 PYEEIASIVGKSEANCRQLVSRARRHLDARRPR-FEV--SR----EESRQLLERFVEAAQ 178 (281)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC-CCC--Ch----HHHHHHHHHHHHHHH
Confidence 467899999999999999999999999875432 111 11 123456777777765
No 332
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=28.68 E-value=46 Score=30.92 Aligned_cols=12 Identities=17% Similarity=0.581 Sum_probs=10.1
Q ss_pred EcCCchhhhhhc
Q 005023 19 INTCHWCHVMEV 30 (718)
Q Consensus 19 y~~C~wChvM~~ 30 (718)
..+|+||+.|+.
T Consensus 14 D~~Cp~C~~~~~ 25 (154)
T cd03023 14 DYNCGYCKKLAP 25 (154)
T ss_pred CCCChhHHHhhH
Confidence 479999999973
No 333
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=28.06 E-value=74 Score=38.04 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=45.0
Q ss_pred HHHHHhc----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005023 324 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 399 (718)
Q Consensus 324 Ei~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 399 (718)
.|.++|. .+..++..+||+.... ..+++++++.+|++.+.+.++-..+..||+.
T Consensus 549 ~l~~~l~~L~~rE~~Vl~~r~g~~~~~----------------------~~tl~ei~~~lgvs~eRVrQie~~al~kLr~ 606 (619)
T PRK05658 549 ATTDVLASLTPREAKVLRMRFGIDMNT----------------------DHTLEEVGKQFDVTRERIRQIEAKALRKLRH 606 (619)
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCC----------------------CccHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 3445543 3466888889984221 1357899999999999999999999999987
Q ss_pred h-hccCCCCCCC
Q 005023 400 V-RSKRPRPHLD 410 (718)
Q Consensus 400 ~-R~~R~~P~~D 410 (718)
. |.++-+.|+|
T Consensus 607 ~~~~~~l~~~~~ 618 (619)
T PRK05658 607 PSRSRKLRSFLD 618 (619)
T ss_pred hHHHHHHHHHhc
Confidence 5 3333334433
No 334
>PRK09210 RNA polymerase sigma factor RpoD; Validated
Probab=27.95 E-value=1.4e+02 Score=33.20 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=41.4
Q ss_pred HHHHHhc----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005023 324 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 399 (718)
Q Consensus 324 Ei~~~L~----~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 399 (718)
.|.++|. .+..++..+||+.... ..++.++++.+|++.+.+.++-..+..||+.
T Consensus 298 ~l~~~l~~L~~rEr~Vl~lrygl~~~~----------------------~~tl~EIa~~lgvs~erVrQi~~~Al~kLr~ 355 (367)
T PRK09210 298 QLEDVLDTLTDREENVLRLRFGLDDGR----------------------TRTLEEVGKVFGVTRERIRQIEAKALRKLRH 355 (367)
T ss_pred HHHHHHHhCCHHHHHHHHHHhccCCCC----------------------CccHHHHHHHHCCCHHHHHHHHHHHHHHHhC
Confidence 4555554 2466788889885321 1357899999999999999999999999986
Q ss_pred h
Q 005023 400 V 400 (718)
Q Consensus 400 ~ 400 (718)
.
T Consensus 356 ~ 356 (367)
T PRK09210 356 P 356 (367)
T ss_pred h
Confidence 4
No 335
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=27.74 E-value=90 Score=36.46 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCC
Q 005023 498 ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 540 (718)
Q Consensus 498 i~all~LYeaTgd~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~t~ 540 (718)
...|..+++..|+. .|.++|.++.+.+.+.|||++.|.||+-.
T Consensus 317 e~~LA~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd 363 (512)
T PF01204_consen 317 EKDLAEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYD 363 (512)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EE
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeee
Confidence 34556778888865 58999999999999999999999999754
No 336
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=27.35 E-value=6.9e+02 Score=28.23 Aligned_cols=57 Identities=16% Similarity=0.019 Sum_probs=38.7
Q ss_pred ccccCCCeEEEe--ecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 005023 468 LYDEQTHRLQHS--FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 524 (718)
Q Consensus 468 ~~d~~~g~l~~~--~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~ 524 (718)
++|..+|.+|.. ..=|.+..-+-|+=+|--+.-|.-|..+..|+-.-+.|++.-.++
T Consensus 528 LyDTGSGTiYDLRH~~LG~APNLARWDYHatHvnqL~llatId~dpv~~~ta~RWkgY~ 586 (594)
T KOG3760|consen 528 LYDTGSGTIYDLRHVALGTAPNLARWDYHATHVNQLKLLATIDKDPVLSKTADRWKGYA 586 (594)
T ss_pred eeecCCCceeehhhhhhccCcccccchhhhHHHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 467666776653 223444344555555777888888888889998888888776554
No 337
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=27.14 E-value=4.5e+02 Score=26.62 Aligned_cols=129 Identities=12% Similarity=0.224 Sum_probs=79.8
Q ss_pred hhhhhhccccCcHHHHHHhhcccEEEEecCCCCcch------HHHHHHHHHHhcCCCCCCcEEEeCCCCceeecccccCC
Q 005023 24 WCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV------DKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPP 97 (718)
Q Consensus 24 wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~------d~~y~~~~q~~~g~~GwP~~vfl~p~g~p~~~~~y~p~ 97 (718)
-||.|..--|+ -+-++=.+..++++---+|.|.- |..+.. -|+.|. ++.|.......--++
T Consensus 34 ~~hr~k~ALfs--VLcE~KEkt~LSir~~qee~p~dpQl~RLDNML~A-----EGV~gP------e~~~~~~~~~~~~~~ 100 (191)
T PF03792_consen 34 NCHRMKPALFS--VLCEIKEKTVLSIRNIQEEDPPDPQLMRLDNMLLA-----EGVAGP------EKGGRAAAAAAGTAA 100 (191)
T ss_pred cCCCCchhhHH--HHHHHHhhcCccccccCCcCCCchhhhhhhcchhh-----hcCcCC------CCcccchhhhhccCc
Confidence 37888866553 11222235567776554554432 332221 466665 445554432222244
Q ss_pred CCCCCcccHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhccc
Q 005023 98 EDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYD 169 (718)
Q Consensus 98 ~~~~~~~~f~~~L~~i~~~w~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D 169 (718)
+.+-...++...|.+|.+.|.+.-++..+...++..++.+.+...+.-.| +++..++.++..+.+-|+
T Consensus 101 ~~~~d~~dYr~kL~~ir~~y~~el~kye~ac~eF~~hV~~lLreQs~~RP----Is~keiE~m~~~i~~Kf~ 168 (191)
T PF03792_consen 101 DNSIDHSDYRAKLSQIRQIYHSELEKYEQACNEFTEHVMNLLREQSEFRP----ISPKEIERMVNIIHRKFS 168 (191)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcccCC----CCHHHHHHHHHHHHHHHH
Confidence 55555668999999999999999999999999998888887764432222 456677887777776553
No 338
>PLN02567 alpha,alpha-trehalase
Probab=26.50 E-value=1.1e+03 Score=27.83 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=58.9
Q ss_pred hchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEe-ecCCCCC----
Q 005023 415 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK---- 486 (718)
Q Consensus 415 t~WNgl~I~---ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~~---- 486 (718)
++-|++|.. .|++.++.+|+... ..+|.+.|.+..+.|.+.+||++.|.++.- .+.++..
T Consensus 328 VDLNa~L~~~e~~LA~la~~lG~~~~------------a~~~~~~A~~~~~aI~~~lWdee~G~y~Dydl~~~~~~~~~~ 395 (554)
T PLN02567 328 VDLNAFLLKMELDIAFFAKLLGDKAT------------AERFLKAAKARKRAINAVLWNEEMGQWLDYWLPPNGATCQES 395 (554)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHHhcCcccCeEEeecccccccccccc
Confidence 556777654 67888888886311 146888999999999999999887766553 2333211
Q ss_pred --CCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-hccc
Q 005023 487 --APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLD 530 (718)
Q Consensus 487 --~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~-~F~D 530 (718)
......--.+.+.+++=|+-=.-++. -..|..+.+.+.+ .|+.
T Consensus 396 ~~~~~~~~~~~~~~s~f~PLw~g~~~~~-~~~a~~v~~~l~~~~l~~ 441 (554)
T PLN02567 396 YTWDAENQNTNVYASNFVPLWCGVVPPG-DAKVEKVVESLKSSGLVL 441 (554)
T ss_pred ccccccccccCccHHHHHHHHcCCCChh-hHHHHHHHHHHHhccCcc
Confidence 00000001233466666664222221 2246667766653 4543
No 339
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=26.06 E-value=1.1e+02 Score=27.00 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeec
Q 005023 248 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAE 299 (718)
Q Consensus 248 EKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p~Ggf~sa~ 299 (718)
+-.+++-++.+.++..+..... ++.+. .++||.+ ++.|+|||....
T Consensus 20 ~~~~~~T~~al~aL~~~g~~~~----~~~~~-~~~~L~~-~q~~dGg~~~~~ 65 (113)
T PF13249_consen 20 PSDVWDTAFALLALAALGEEPD----RDRAA-AVEWLLS-QQNPDGGWGSNP 65 (113)
T ss_dssp -BEHHHHHHHHHHHHHHTSHHC----HHHHH-HHHHHHH-HB-TTSGBBSST
T ss_pred CCCHHHHHHHHHHHHHhCCccc----HHHHH-HHHHHHH-hCCCCCCccCCC
Confidence 5567888888888887655552 22222 5999998 667999997743
No 340
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=25.97 E-value=2.6e+02 Score=29.06 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 005023 208 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 287 (718)
Q Consensus 208 ~~~~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~ 287 (718)
++.+.+...++.+.. +-.-+|||--|... . +--.+.-|..+.++.++-+.. +.-..+..++++||.+.
T Consensus 46 ~~~~~i~~~~~~l~~---~Q~~dGgf~~w~~~------~-~~~~~~Ta~~~~~L~~a~~~~--~v~~~~i~ra~~~L~~~ 113 (282)
T cd02891 46 KALEYIRKGYQRLLT---YQRSDGSFSAWGNS------D-SGSTWLTAYVVKFLSQARKYI--DVDENVLARALGWLVPQ 113 (282)
T ss_pred HHHHHHHHHHHHHHh---hcCCCCCccccCCC------C-CCchHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhc
Confidence 556666666666655 33468898633221 1 344577888999999887765 23357789999999986
Q ss_pred ccCCCCceee
Q 005023 288 MIGPGGEIFS 297 (718)
Q Consensus 288 m~~p~Ggf~s 297 (718)
+.++|+|..
T Consensus 114 -q~~~g~~~~ 122 (282)
T cd02891 114 -QKEDGSFRE 122 (282)
T ss_pred -cCCCCCcCC
Confidence 567787754
No 341
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=24.63 E-value=1.2e+03 Score=27.59 Aligned_cols=131 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred cEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-CCcee------eeccCCcc
Q 005023 232 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-GGEIF------SAEDADSA 304 (718)
Q Consensus 232 GF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~m~~p-~Ggf~------sa~DADs~ 304 (718)
|.+ |--.+-|+-|---.=.=-||--+.-.++.|-+|||+.-+.+..+=+.|++.+..-. +|-|. ++-..|.
T Consensus 388 gM~-Y~~~PVyhDPpSN~WfG~Q~Wsm~R~AeyYy~tGd~~ak~ildKWv~W~~~~~~~~~dG~f~IPs~L~WSGqPDt- 465 (619)
T PF02011_consen 388 GMA-YDEQPVYHDPPSNRWFGMQAWSMERVAEYYYETGDARAKAILDKWVAWALSNTTVNSDGTFEIPSTLEWSGQPDT- 465 (619)
T ss_dssp TEE-EESSSS-TTTTTTTBTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT-EE-TTS-EEEEEEEEEES-----
T ss_pred cee-ccCCcccCCCCCCCcccccchhHHHHHHHHHHhccHHHHHHHHHHHHHHHhhceeCCCCcEecCCCCcccCCCCC-
Q ss_pred cccCcccccCCceEeechHHHHHHhchhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeecc----CCchHHHHhcC
Q 005023 305 ETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIEL----NDSSASASKLG 380 (718)
Q Consensus 305 ~~~~~~~~~EG~yY~Wt~~Ei~~~L~~~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~----~~~~~~a~~~g 380 (718)
|+ |+ ..|+..||+. ..+--++
T Consensus 466 ---------------W~------------------------~s------------~t~N~nLHV~V~~yg~DvGva---- 490 (619)
T PF02011_consen 466 ---------------WT------------------------GS------------PTGNPNLHVTVTDYGQDVGVA---- 490 (619)
T ss_dssp ----------------T------------------------TS----------------TTEEEEEEEEE--HHHH----
T ss_pred ---------------cc------------------------CC------------CCCCCceEEEEecCCCchhHH----
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHH
Q 005023 381 MPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESA 460 (718)
Q Consensus 381 ~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~ 460 (718)
+-++.+|+-.+...++ .+..+.|+++
T Consensus 491 --------------------------------------~S~AktL~yYAA~sg~----------------~~Ak~~Ak~L 516 (619)
T PF02011_consen 491 --------------------------------------GSYAKTLTYYAAKSGD----------------QEAKDTAKQL 516 (619)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHhhccc----------------HHHHHHHHHH
Q ss_pred HHHHHHhccccCC
Q 005023 461 ASFIRRHLYDEQT 473 (718)
Q Consensus 461 ~~~l~~~~~d~~~ 473 (718)
++.|+.+..|..+
T Consensus 517 LD~iW~~~~D~~G 529 (619)
T PF02011_consen 517 LDAIWNNYQDDKG 529 (619)
T ss_dssp HHHHHHHCECTTC
T ss_pred HHHHHHhCCCCCc
No 342
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=24.31 E-value=92 Score=31.77 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=28.0
Q ss_pred cCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005023 369 LNDSSASASKLGMPLEKYLNILGECRRKLFD 399 (718)
Q Consensus 369 ~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~ 399 (718)
..+..++|+++|++...+.+.|+.|.+||..
T Consensus 178 ~~~l~dLA~~lGISkst~~ehLRrAe~Kl~~ 208 (215)
T COG3413 178 RVSLKDLAKELGISKSTLSEHLRRAERKLIE 208 (215)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999975
No 343
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=24.13 E-value=1.7e+02 Score=31.26 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=38.0
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHH
Q 005023 371 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 430 (718)
Q Consensus 371 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~ 430 (718)
+.+++|+.+|+++..++..+..+|++|.+.+.. ..+ +.. =|.-++.++..|..
T Consensus 133 s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~~~-~~~--~~~----~~~~~v~~f~~A~~ 185 (293)
T PRK09636 133 PFDEIASTLGRSPAACRQLASRARKHVRAARPR-FPV--SDE----EGAELVEAFFAALA 185 (293)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC-CCC--Cch----HHHHHHHHHHHHHH
Confidence 467899999999999999999999999986542 111 111 24456666666654
No 344
>PLN02420 endoglucanase
Probab=23.70 E-value=1.2e+03 Score=27.34 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCC--------CC---C
Q 005023 419 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--------SK---A 487 (718)
Q Consensus 419 gl~I~ALa~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~--------~~---~ 487 (718)
|..++.|+.++..+++.- +-.|. .+.+|+.++-..+|+++-... .+.+++..-+|. |. .
T Consensus 103 a~t~~~L~w~~~ef~d~~-------~~~g~-~~d~Ldeikw~lD~llk~~~~--~~~~~~qvGdg~~DH~~w~~Pe~~~~ 172 (525)
T PLN02420 103 AFTVTMLSWSVIEYGDQL-------ASTGE-LSHALEAIKWGTDYFIKAHTS--PNVLWAEVGDGDTDHYCWQRPEDMTT 172 (525)
T ss_pred HHHHHHHHHHHHHHHHhh-------hhcCC-cHHHHHHHHHHHHHHHHhCcC--CCceEEeeCCCCcccccccChhhccc
Confidence 555666666666555421 11222 378999999999999976533 355655443331 10 0
Q ss_pred CCC---------cccH-HHHHHHHHHHHHHcC--ChH----HHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccc
Q 005023 488 PGF---------LDDY-AFLISGLLDLYEFGS--GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 551 (718)
Q Consensus 488 ~~~---------l~Dy-A~li~all~LYeaTg--d~~----~L~~A~~L~~~~~~~F~D~~~Gg~f~t~~~~~~l~~r~k 551 (718)
.+. -.|- +.++-+|...+.+-. |+. .|+.|+++++.... ..|.| ..+...
T Consensus 173 ~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA~~-----~~g~y-~~~~~~-------- 238 (525)
T PLN02420 173 SRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFGDK-----YRGKY-DESLKV-------- 238 (525)
T ss_pred cCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHh-----cCCcc-CCCCcc--------
Confidence 010 1232 344455555555544 454 47777777766543 22333 211000
Q ss_pred cCCCCCCCC---hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005023 552 EDHDGAEPS---GNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 593 (718)
Q Consensus 552 ~~~D~a~PS---~ns~~a~~LlrL~~lt~~~~~~~y~e~a~~~l~ 593 (718)
-.+...| -+-.++++-..|++.||+ ..|.+.+.+...
T Consensus 239 --~~g~Y~s~s~y~DEl~WAAawLY~ATgd---~~Yl~~a~~~~~ 278 (525)
T PLN02420 239 --VKSYYASVSGYMDELLWGATWLYRATDN---EHYMSYVVDMAH 278 (525)
T ss_pred --cCCCCCCcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 0011222 134788888899999996 789988765433
No 345
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=23.57 E-value=1.6e+02 Score=31.66 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=37.1
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHHHHHHH
Q 005023 371 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 430 (718)
Q Consensus 371 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~ALa~A~~ 430 (718)
+.+++|+.+|+++..++..+..+|++|.+.+. +..+.-+ =..-++.++..|..
T Consensus 136 s~~EIA~~Lgis~~tVr~~l~RAr~~Lr~~~~-~~~~~~~------~~~~~~~~f~~a~~ 188 (290)
T PRK09635 136 PYQQIATTIGSQASTCRQLAHRARRKINESRI-AASVEPA------QHRVVTRAFIEACS 188 (290)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHhhCC-CCCCChH------HHHHHHHHHHHHHH
Confidence 46789999999999999999999999987543 2122211 12445666666654
No 346
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=22.72 E-value=1.3e+02 Score=28.45 Aligned_cols=60 Identities=27% Similarity=0.267 Sum_probs=43.1
Q ss_pred cCCcE---EEEcCCchhhhhhccccCcHHHHHHhhcccEEE-EecCCCCcchHHHHHHHHHHhcCCCCCCcEEEeC
Q 005023 12 TRRTH---FLINTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 83 (718)
Q Consensus 12 e~K~i---i~y~~C~wChvM~~esf~d~~va~~ln~~Fv~v-kvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl~ 83 (718)
+.|++ ||-+|=+-|-.|+. .+ ..+++-+. ||..| -||++|-|+..+. ++..-.|+++|+-
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~-~L--~~i~~~vs-nfa~IylvdideV~~~~~~--------~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDE-LL--SSIAEDVS-NFAVIYLVDIDEVPDFVKM--------YELYDPPTVMFFF 85 (142)
T ss_pred cceEEEEEecCCCCchHhhHHH-HH--HHHHHHHh-hceEEEEEecchhhhhhhh--------hcccCCceEEEEE
Confidence 35555 46799999999995 33 35666665 57777 4799999988876 4556778887764
No 347
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=22.56 E-value=1.3e+03 Score=27.27 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHHHHHHHHh--CCCcccCCCcEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005023 204 GEASEGQKMVLFTLQCMAK--GGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDIL 281 (718)
Q Consensus 204 ~~~~~~~~~~~~TL~~m~~--gGi~D~v~GGF~RYsvD~~W~vPHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~ 281 (718)
.+++...+.|.+.++++-. .| -|-+|--+. -...+|.-|.---..=--. +-.-.+++|-+.+|++|.++-.++.
T Consensus 212 TGD~~fE~vA~~A~~~lW~~RS~-igLlGn~id--V~tG~W~~~~sGIGAgiDS-fyEYllK~yILfgd~e~lemf~ea~ 287 (622)
T KOG2429|consen 212 TGDPKFEKVARRALDALWSLRSG-IGLLGNHID--VQTGEWTAPDSGIGAGIDS-FYEYLLKGYILFGDPELLEMFNEAY 287 (622)
T ss_pred hCCcHHHHHHHHHHHHHHhhcCC-CCcccceee--ccccceeccccccccchHH-HHHHHHHHheecCCHHHHHHHHHHH
Confidence 3567777777777777643 22 344433333 4467787664211100000 1122357899999999999999988
Q ss_pred HHHHHhccCCCCceeeeccCCcccccCcccccCCceEeechHHHHHH-------hch--hH-HH------HHHHhcccCC
Q 005023 282 DYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDI-------LGE--HA-IL------FKEHYYLKPT 345 (718)
Q Consensus 282 ~~l~~~m~~p~Ggf~sa~DADs~~~~~~~~~~EG~yY~Wt~~Ei~~~-------L~~--~~-~~------~~~~~~v~~~ 345 (718)
.=+...|+. |-+|.-.+.++ |.--.|--+-++.- .|| ++ .. +-+.||..++
T Consensus 288 ~ai~~y~r~--~~wY~~V~m~~-----------G~v~~p~~dSLqAfwpGlqvLaGDvd~A~~~h~~y~~vwkkyG~lPE 354 (622)
T KOG2429|consen 288 EAIQKYTRK--GPWYVNVNMDS-----------GSVSLPWFDSLQAFWPGLQVLAGDVDDAIRTHLMYFSVWKKYGFLPE 354 (622)
T ss_pred HHHHHHhhc--CCeEEEEecCC-----------CceehHHHhhHHhhccchhhhhcchHHHHHHHHHHHHHHHHcCCCcc
Confidence 888888875 45888777665 22222223333332 232 11 11 2334555554
Q ss_pred CCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhchHHHHHHHH
Q 005023 346 GNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSF 425 (718)
Q Consensus 346 Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~R~~P~~Ddkilt~WNgl~I~AL 425 (718)
.. |+-+...++ .....|.+ --+|...
T Consensus 355 ry----------------N~~~~~~~~-----------------------------~~~~YPLR---------PElvESt 380 (622)
T KOG2429|consen 355 RY----------------NLATQEPPP-----------------------------KREGYPLR---------PELVEST 380 (622)
T ss_pred cc----------------cccCCCCCC-----------------------------CcccCCCC---------HHHHHHH
Confidence 42 221111100 00012222 3456677
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHH---HHHHHHH
Q 005023 426 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA---FLISGLL 502 (718)
Q Consensus 426 a~A~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA---~li~all 502 (718)
--.|++++| +-||+..+.+.+-|....+.+ .++-. .++ .+...++|-+ |+.+.+-
T Consensus 381 yyLYrATkd----------------p~yL~vG~~~l~sLe~~~k~~--CGfAt-i~n---V~~~~ledrMESFFLaET~K 438 (622)
T KOG2429|consen 381 YYLYRATKD----------------PFYLHVGEDMLKSLEKYTKVK--CGFAT-IRN---VITHSLEDRMESFFLAETLK 438 (622)
T ss_pred HHHHHhcCC----------------cHHHHHHHHHHHHHHHhccCC--cccee-eee---hhhcchHHHHHHHHHHHHHh
Confidence 778999998 899999999999999888763 33332 222 2346678875 5677777
Q ss_pred HHHHHcC
Q 005023 503 DLYEFGS 509 (718)
Q Consensus 503 ~LYeaTg 509 (718)
.||-...
T Consensus 439 YLYLLFD 445 (622)
T KOG2429|consen 439 YLYLLFD 445 (622)
T ss_pred HHheeec
Confidence 7775543
No 348
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=22.37 E-value=2.1e+02 Score=31.05 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=37.6
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcc--CCCCCCCchhhhchHHHHHHHHHHHH
Q 005023 371 DSSASASKLGMPLEKYLNILGECRRKLFDVRSK--RPRPHLDDKVIVSWNGLVISSFARAS 429 (718)
Q Consensus 371 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~R~~--R~~P~~Ddkilt~WNgl~I~ALa~A~ 429 (718)
+..++|+.+|+++..++..|..+|++|.+.|.. +..|..|.. =|--++.++..|.
T Consensus 171 s~~EIA~~lgis~~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~----~~~~~v~~~~~A~ 227 (339)
T PRK08241 171 SAAEVAELLDTSVAAVNSALQRARATLAERGPSAADTLREPDDP----EERALLARYVAAF 227 (339)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHhhcCCCcccccCCCCCh----HHHHHHHHHHHHH
Confidence 567999999999999999999999999984321 122444444 2334455554444
No 349
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=22.13 E-value=52 Score=31.66 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=11.5
Q ss_pred EcCCchhhhhhccc
Q 005023 19 INTCHWCHVMEVES 32 (718)
Q Consensus 19 y~~C~wChvM~~es 32 (718)
...|+||+.|++..
T Consensus 24 D~~Cp~C~~~~~~~ 37 (178)
T cd03019 24 SYGCPHCYNFEPIL 37 (178)
T ss_pred CCCCcchhhhhHHH
Confidence 37999999999543
No 350
>PRK07406 RNA polymerase sigma factor RpoD; Validated
Probab=21.94 E-value=2.2e+02 Score=31.95 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=27.4
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005023 371 DSSASASKLGMPLEKYLNILGECRRKLFDV 400 (718)
Q Consensus 371 ~~~~~a~~~g~~~~~~~~~l~~~r~~L~~~ 400 (718)
++.++++.+|++.+.+.++...+++||+..
T Consensus 333 Tl~EIA~~lgiS~eRVRQie~rAL~KLR~~ 362 (373)
T PRK07406 333 TLEEIGQIFNVTRERIRQIEAKALRKLRHP 362 (373)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHhch
Confidence 578999999999999999999999999863
No 351
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=21.91 E-value=85 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcccccCCCCCCCCCCCC
Q 005023 157 LRLCAEQLSKSYDSRFGGFGSAPKFPR 183 (718)
Q Consensus 157 ~~~~~~~l~~~~D~~~GGfg~apKFP~ 183 (718)
.+++.+.+.+..+ ..|||++.|.=|.
T Consensus 3 ~~~~~~~l~~~Q~-~dGGf~~~~~~~~ 28 (44)
T PF00432_consen 3 VEKLIRFLLSCQN-PDGGFGGRPGGES 28 (44)
T ss_dssp HHHHHHHHHHTBB-TTSSBBSSTTSSB
T ss_pred HHHHHHHHHHHCC-CCCCCCCCCCCCC
Confidence 4567788888888 7899999886543
No 352
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.64 E-value=8.3e+02 Score=26.87 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhccccCCCeEEEeecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcc
Q 005023 457 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGY 536 (718)
Q Consensus 457 A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~LYeaTgd~~~L~~A~~L~~~~~~~F~D~~~Gg~ 536 (718)
-+++..||.++... .|+| +|++ .-+.|-+|.-+.+..|.-++ ...| -.-++|.++++..- ++..|||
T Consensus 225 ~E~l~~Wl~~RQ~s--sgGl-----~GR~---nKl~D~CYs~WvlsSl~il~-~~~~-in~e~L~~yiL~c~-q~~sGGf 291 (342)
T COG5029 225 VEKLIRWLAERQLS--SGGL-----NGRS---NKLVDTCYSFWVLSSLAILG-KLDF-INTEELTDYILDCQ-QETSGGF 291 (342)
T ss_pred HHHHHHHHHHcccc--cCCc-----CCCc---ccCccchhhhhhcchHHhcc-hhhh-cCHHHHHHHHHhhc-ccCCCCC
Confidence 57788888877654 3444 3443 22445554445555554443 1222 23367888887765 5568999
Q ss_pred ccCCCCCCc
Q 005023 537 FNTTGEDPS 545 (718)
Q Consensus 537 f~t~~~~~~ 545 (718)
-+.+.+.++
T Consensus 292 sdrp~~~~D 300 (342)
T COG5029 292 SDRPGEEPD 300 (342)
T ss_pred CCCCcccch
Confidence 888765443
No 353
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=21.41 E-value=47 Score=29.50 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.5
Q ss_pred hhhhccccCcHHHHHHhhcc
Q 005023 26 HVMEVESFEDEGVAKLLNDW 45 (718)
Q Consensus 26 hvM~~esf~d~~va~~ln~~ 45 (718)
..|.+++++||+|.++|++|
T Consensus 22 ~~l~~~vl~dp~V~~Fl~~h 41 (94)
T PF07319_consen 22 EQLKQEVLSDPEVQAFLQEH 41 (94)
T ss_dssp HHHHHHHTT-HHHHHHHHHS
T ss_pred HHHHHHHHcCHHHHHHHHHh
Confidence 45778999999999999985
No 354
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=21.35 E-value=5.5e+02 Score=27.32 Aligned_cols=27 Identities=4% Similarity=0.033 Sum_probs=19.6
Q ss_pred CChHHHHHHHHHHHHHHHhccCCCCcee
Q 005023 269 KDVFYSYICRDILDYLRRDMIGPGGEIF 296 (718)
Q Consensus 269 ~~~~y~~~A~~~~~~l~~~m~~p~Ggf~ 296 (718)
+...+.+ .....+||++....+.|||-
T Consensus 239 ~~~~~~~-~~~l~~~l~~~q~~~~GGf~ 265 (287)
T cd02894 239 GRLHWIN-KNKLKNFILACQDEEDGGFA 265 (287)
T ss_pred ccccccC-HHHHHHHHHHhcCCCCCCcC
Confidence 3334444 78899999997666789994
No 355
>COG0568 RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]
Probab=21.11 E-value=2.3e+02 Score=31.33 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=36.9
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005023 332 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 398 (718)
Q Consensus 332 ~~~~~~~~~~v~~~Gn~~~~~~~dp~~~~eg~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~r~~L~ 398 (718)
+..++...||+. |+ + ..+++++++.+|++.+.++++...+.+||+
T Consensus 284 E~~Vi~~R~gl~--~~-------------~-------~~TLeevg~~~~isrERvRQIE~kAl~KLr 328 (342)
T COG0568 284 ERRVIRLRFGLD--DG-------------E-------PKTLEELGEEFGISRERVRQIEAKALRKLR 328 (342)
T ss_pred HHHHHHHHhccC--CC-------------C-------cchHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 466788888887 22 0 246789999999999999999999999998
No 356
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=60 Score=33.59 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=45.3
Q ss_pred cCCcEEE---EcCCchhhhhhccccCcHHHHHHhhcccEEEEecCCCCcchHHHHHHHHHHhcCCCCCCcEEEe
Q 005023 12 TRRTHFL---INTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 82 (718)
Q Consensus 12 e~K~ii~---y~~C~wChvM~~esf~d~~va~~ln~~Fv~vkvD~ee~pd~d~~y~~~~q~~~g~~GwP~~vfl 82 (718)
.+|+++. ..||.-|.-|+ ++|. .++++. ++...+|++.++.|+|...+.- .+.|+.++.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~-~v~~--~~~~~~-~~~~~~k~~a~~~~eis~~~~v--------~~vp~~~~~ 77 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMD-QVFD--HLAEYF-KNAQFLKLEAEEFPEISNLIAV--------EAVPYFVFF 77 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHH-HHHH--HHHHhh-hhheeeeehhhhhhHHHHHHHH--------hcCceeeee
Confidence 4555554 47888899998 5554 456666 7889999999999999987653 578999887
No 357
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=20.18 E-value=8.1e+02 Score=25.88 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCcccCCCcEEEEecCCCCCC---CCCcchHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 005023 211 KMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHV---PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 287 (718)
Q Consensus 211 ~~~~~TL~~m~~gGi~D~v~GGF~RYsvD~~W~v---PHFEKmLyDnA~ll~~ya~Ay~~t~~~~y~~~A~~~~~~l~~~ 287 (718)
.++.++++-+.. +-+-+|||..+ +..++- +.-+...+-.|..+.+++++. .+.+...++++++||.+.
T Consensus 102 ~~i~ra~~wL~~---~Q~~dG~f~~~--~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g----~~~~~~~i~~a~~yL~~~ 172 (292)
T cd02897 102 NVLQQALTWLSS---HQKSNGCFREV--GRVFHKAMQGGVDDEVALTAYVLIALLEAG----LPSERPVVEKALSCLEAA 172 (292)
T ss_pred HHHHHHHHHHHH---hcCCCCCCCCC--CcccChhhcCCCCCCcchHHHHHHHHHhcC----CccccHHHHHHHHHHHHh
Confidence 345555555544 13457888642 221110 000122345788888888754 333677889999999986
Q ss_pred cc
Q 005023 288 MI 289 (718)
Q Consensus 288 m~ 289 (718)
+.
T Consensus 173 ~~ 174 (292)
T cd02897 173 LD 174 (292)
T ss_pred cc
Confidence 54
Done!