Query 005024
Match_columns 718
No_of_seqs 408 out of 4139
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 16:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0482 DNA replication licens 100.0 1E-140 2E-145 1082.4 47.3 713 2-716 6-721 (721)
2 KOG0480 DNA replication licens 100.0 3E-118 7E-123 942.1 51.6 595 8-640 24-650 (764)
3 COG1241 MCM2 Predicted ATPase 100.0 1E-112 3E-117 942.0 62.8 654 9-711 3-678 (682)
4 KOG0481 DNA replication licens 100.0 2E-110 4E-115 859.8 52.2 670 5-713 24-725 (729)
5 PTZ00111 DNA replication licen 100.0 2E-106 5E-111 910.0 65.1 671 5-710 84-907 (915)
6 KOG0478 DNA replication licens 100.0 5E-107 1E-111 863.6 44.7 653 2-712 126-802 (804)
7 KOG0479 DNA replication licens 100.0 8E-104 2E-108 821.8 47.5 589 10-636 11-645 (818)
8 KOG0477 DNA replication licens 100.0 1E-101 2E-106 811.3 36.4 589 8-639 160-763 (854)
9 smart00350 MCM minichromosome 100.0 3.1E-90 6.7E-95 771.4 53.1 495 140-637 2-508 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 4.8E-65 1.1E-69 538.2 10.4 324 313-637 1-330 (331)
11 COG3829 RocR Transcriptional r 100.0 1.8E-28 4E-33 260.5 18.4 296 334-699 243-558 (560)
12 PRK13407 bchI magnesium chelat 99.9 7.4E-26 1.6E-30 237.0 24.7 264 336-639 8-312 (334)
13 COG3604 FhlA Transcriptional r 99.9 4E-26 8.7E-31 239.1 19.1 290 337-698 224-543 (550)
14 TIGR02030 BchI-ChlI magnesium 99.9 2.5E-25 5.3E-30 233.7 25.1 266 336-640 4-316 (337)
15 CHL00081 chlI Mg-protoporyphyr 99.9 2.2E-25 4.7E-30 233.6 22.5 264 337-639 18-328 (350)
16 COG2204 AtoC Response regulato 99.9 3.1E-26 6.8E-31 245.0 16.5 295 333-699 138-455 (464)
17 TIGR02442 Cob-chelat-sub cobal 99.9 2.2E-25 4.8E-30 255.3 23.5 267 336-638 4-309 (633)
18 TIGR00368 Mg chelatase-related 99.9 3.7E-25 8.1E-30 243.9 21.3 253 336-632 192-498 (499)
19 TIGR02031 BchD-ChlD magnesium 99.9 1.2E-24 2.6E-29 246.3 23.8 258 342-639 1-264 (589)
20 PRK09862 putative ATP-dependen 99.9 5.6E-25 1.2E-29 240.9 18.3 255 336-633 191-492 (506)
21 COG0606 Predicted ATPase with 99.9 1.9E-24 4.1E-29 227.3 15.8 267 336-633 179-485 (490)
22 COG2255 RuvB Holliday junction 99.9 1.1E-22 2.4E-27 199.0 24.0 283 336-714 26-318 (332)
23 PRK13531 regulatory ATPase Rav 99.9 1.9E-22 4.2E-27 216.4 26.2 270 326-636 10-286 (498)
24 PF01078 Mg_chelatase: Magnesi 99.9 5.5E-24 1.2E-28 204.4 10.9 167 336-516 3-199 (206)
25 COG1239 ChlI Mg-chelatase subu 99.9 1.8E-22 4E-27 209.7 17.7 267 334-638 15-327 (423)
26 COG0714 MoxR-like ATPases [Gen 99.9 3.6E-21 7.9E-26 205.1 23.4 277 327-638 15-301 (329)
27 PRK13406 bchD magnesium chelat 99.9 4.1E-21 9E-26 215.1 20.9 241 341-638 8-255 (584)
28 COG3283 TyrR Transcriptional r 99.9 4E-21 8.6E-26 192.6 12.6 264 371-698 229-505 (511)
29 PRK15424 propionate catabolism 99.8 2.8E-20 6.1E-25 206.5 19.0 299 335-700 218-536 (538)
30 TIGR02974 phageshock_pspF psp 99.8 2.9E-20 6.4E-25 196.6 17.8 276 371-698 24-329 (329)
31 PF05496 RuvB_N: Holliday junc 99.8 2E-20 4.4E-25 180.7 13.4 200 334-613 22-229 (233)
32 TIGR02329 propionate_PrpR prop 99.8 2.9E-20 6.3E-25 206.8 16.6 303 336-697 212-526 (526)
33 PF07726 AAA_3: ATPase family 99.8 1.5E-20 3.3E-25 165.4 9.9 125 371-510 1-129 (131)
34 COG3284 AcoR Transcriptional a 99.8 2.2E-20 4.8E-25 202.8 13.4 254 367-698 334-602 (606)
35 TIGR00764 lon_rel lon-related 99.8 3.6E-19 7.9E-24 202.0 22.0 172 424-635 208-393 (608)
36 PRK11388 DNA-binding transcrip 99.8 8.5E-20 1.8E-24 211.8 17.2 272 371-698 350-628 (638)
37 PRK05022 anaerobic nitric oxid 99.8 8.4E-20 1.8E-24 205.4 16.4 304 336-698 187-505 (509)
38 PRK11608 pspF phage shock prot 99.8 5.2E-19 1.1E-23 187.4 20.5 276 371-698 31-323 (326)
39 TIGR02640 gas_vesic_GvpN gas v 99.8 5.3E-19 1.2E-23 181.9 20.0 212 371-635 23-259 (262)
40 PRK00080 ruvB Holliday junctio 99.8 6.8E-19 1.5E-23 187.7 21.0 284 336-714 25-317 (328)
41 TIGR02902 spore_lonB ATP-depen 99.8 5.9E-19 1.3E-23 198.2 21.1 249 311-631 37-330 (531)
42 TIGR01650 PD_CobS cobaltochela 99.8 1.6E-18 3.5E-23 178.8 22.4 222 371-634 66-295 (327)
43 PRK10820 DNA-binding transcrip 99.8 4.4E-19 9.5E-24 199.4 17.5 272 371-698 229-510 (520)
44 TIGR01817 nifA Nif-specific re 99.8 1.2E-18 2.7E-23 197.8 19.3 300 336-698 196-527 (534)
45 TIGR00635 ruvB Holliday juncti 99.8 7.5E-18 1.6E-22 178.4 22.6 285 336-713 4-295 (305)
46 TIGR02915 PEP_resp_reg putativ 99.8 3.1E-18 6.7E-23 191.1 18.2 269 371-698 164-442 (445)
47 COG1221 PspF Transcriptional r 99.8 1.2E-18 2.6E-23 183.7 13.8 198 371-615 103-311 (403)
48 PRK10923 glnG nitrogen regulat 99.8 4.2E-18 9E-23 191.3 18.8 276 371-698 163-466 (469)
49 PRK15115 response regulator Gl 99.8 6.5E-18 1.4E-22 188.5 19.5 269 371-698 159-435 (444)
50 PRK11361 acetoacetate metaboli 99.8 7.4E-18 1.6E-22 188.9 19.2 276 371-698 168-454 (457)
51 PRK15429 formate hydrogenlyase 99.8 9.6E-18 2.1E-22 195.8 19.4 296 337-698 377-681 (686)
52 TIGR01818 ntrC nitrogen regula 99.7 3.6E-17 7.9E-22 183.6 18.7 276 371-698 159-463 (463)
53 PRK13765 ATP-dependent proteas 99.7 2.5E-16 5.4E-21 177.9 20.3 163 424-631 217-398 (637)
54 PRK10365 transcriptional regul 99.7 1.5E-16 3.2E-21 177.6 18.0 269 371-697 164-441 (441)
55 COG2256 MGS1 ATPase related to 99.7 8.6E-16 1.9E-20 158.2 19.3 207 329-631 13-236 (436)
56 CHL00181 cbbX CbbX; Provisiona 99.7 4E-16 8.6E-21 161.8 12.7 219 327-611 14-252 (287)
57 COG0466 Lon ATP-dependent Lon 99.7 1.2E-16 2.6E-21 174.9 8.8 272 287-632 291-583 (782)
58 PTZ00112 origin recognition co 99.7 3.8E-15 8.1E-20 166.9 20.1 297 337-709 756-1088(1164)
59 PF07728 AAA_5: AAA domain (dy 99.7 2E-16 4.4E-21 147.0 7.8 128 371-510 1-139 (139)
60 TIGR02880 cbbX_cfxQ probable R 99.6 1.2E-15 2.5E-20 158.6 12.6 218 330-614 16-254 (284)
61 PF14551 MCM_N: MCM N-terminal 99.6 1.3E-16 2.8E-21 144.5 3.8 118 10-159 2-121 (121)
62 COG1222 RPT1 ATP-dependent 26S 99.6 8.9E-15 1.9E-19 148.3 16.5 191 371-635 187-394 (406)
63 PRK05342 clpX ATP-dependent pr 99.6 3.3E-15 7.2E-20 161.6 13.4 154 332-486 67-240 (412)
64 PHA02244 ATPase-like protein 99.6 2.3E-14 5E-19 149.4 17.9 140 371-521 121-262 (383)
65 KOG0989 Replication factor C, 99.6 3.5E-14 7.5E-19 141.3 17.7 196 336-622 36-242 (346)
66 TIGR02903 spore_lon_C ATP-depe 99.6 3.1E-14 6.7E-19 162.6 19.5 228 334-633 152-430 (615)
67 TIGR02928 orc1/cdc6 family rep 99.6 6.2E-14 1.3E-18 152.4 20.9 303 334-708 13-351 (365)
68 KOG2004 Mitochondrial ATP-depe 99.6 3.6E-15 7.7E-20 162.2 10.5 205 332-582 407-627 (906)
69 TIGR02881 spore_V_K stage V sp 99.6 2.2E-14 4.8E-19 147.9 15.6 216 337-614 7-239 (261)
70 TIGR00382 clpX endopeptidase C 99.6 9.9E-15 2.1E-19 156.8 13.4 249 329-609 70-380 (413)
71 PRK14962 DNA polymerase III su 99.6 9.5E-14 2.1E-18 153.1 21.3 212 330-632 8-241 (472)
72 PRK00411 cdc6 cell division co 99.6 1.4E-13 3.1E-18 151.2 22.4 297 334-707 28-358 (394)
73 PLN03025 replication factor C 99.6 2.2E-14 4.7E-19 152.4 14.6 201 337-630 14-220 (319)
74 PRK14956 DNA polymerase III su 99.6 3.6E-13 7.8E-18 146.0 24.0 217 327-631 9-244 (484)
75 KOG0734 AAA+-type ATPase conta 99.5 2.6E-14 5.6E-19 150.7 11.0 190 371-633 339-541 (752)
76 PRK07003 DNA polymerase III su 99.5 2.7E-13 5.9E-18 152.0 19.4 210 336-633 16-244 (830)
77 PRK10787 DNA-binding ATP-depen 99.5 9.5E-14 2.1E-18 161.9 16.4 243 331-631 317-580 (784)
78 PRK14960 DNA polymerase III su 99.5 5.4E-13 1.2E-17 148.3 20.8 209 336-631 15-241 (702)
79 PRK14949 DNA polymerase III su 99.5 9.8E-13 2.1E-17 150.4 23.3 206 335-631 15-242 (944)
80 PRK14961 DNA polymerase III su 99.5 2.1E-12 4.5E-17 139.4 24.8 209 335-631 15-242 (363)
81 COG1223 Predicted ATPase (AAA+ 99.5 3E-14 6.4E-19 137.9 9.0 221 332-632 117-354 (368)
82 PRK14958 DNA polymerase III su 99.5 9.1E-13 2E-17 146.9 21.6 209 336-632 16-243 (509)
83 COG1474 CDC6 Cdc6-related prot 99.5 2.7E-13 5.9E-18 144.7 16.1 270 371-710 44-337 (366)
84 PF00158 Sigma54_activat: Sigm 99.5 2.5E-14 5.4E-19 136.3 7.3 113 371-486 24-144 (168)
85 PRK13342 recombination factor 99.5 9.7E-13 2.1E-17 144.6 20.1 197 337-632 13-218 (413)
86 PRK13341 recombination factor 99.5 7.4E-13 1.6E-17 152.6 19.9 204 337-631 29-245 (725)
87 PRK12323 DNA polymerase III su 99.5 9.8E-13 2.1E-17 145.8 18.7 211 335-633 15-249 (700)
88 KOG0738 AAA+-type ATPase [Post 99.5 3.7E-13 8.1E-18 137.4 13.9 239 337-636 213-472 (491)
89 PRK08691 DNA polymerase III su 99.5 6.7E-12 1.5E-16 141.0 23.5 211 336-633 16-244 (709)
90 COG1224 TIP49 DNA helicase TIP 99.5 1.6E-12 3.6E-17 131.5 16.2 146 434-639 292-438 (450)
91 TIGR00763 lon ATP-dependent pr 99.5 6.3E-13 1.4E-17 156.7 15.6 245 328-633 312-586 (775)
92 PRK11034 clpA ATP-dependent Cl 99.4 1.3E-12 2.8E-17 151.2 17.3 237 325-607 447-709 (758)
93 PRK06645 DNA polymerase III su 99.4 1.1E-11 2.4E-16 137.3 22.6 213 336-633 21-256 (507)
94 PRK03992 proteasome-activating 99.4 1.3E-12 2.9E-17 141.9 15.0 194 371-638 167-377 (389)
95 PRK08451 DNA polymerase III su 99.4 1.2E-11 2.7E-16 136.9 22.7 209 335-631 13-240 (535)
96 CHL00195 ycf46 Ycf46; Provisio 99.4 1.3E-12 2.7E-17 144.3 14.7 218 336-635 228-465 (489)
97 KOG2028 ATPase related to the 99.4 8.5E-13 1.8E-17 133.5 12.0 218 337-631 139-366 (554)
98 PRK14952 DNA polymerase III su 99.4 1.4E-11 3E-16 138.6 23.0 218 327-631 4-242 (584)
99 PRK00440 rfc replication facto 99.4 4.8E-12 1E-16 134.9 18.4 273 337-708 18-299 (319)
100 PRK14957 DNA polymerase III su 99.4 5.4E-12 1.2E-16 140.6 19.1 206 336-632 16-243 (546)
101 PRK05896 DNA polymerase III su 99.4 8.9E-12 1.9E-16 138.8 20.5 219 326-631 6-242 (605)
102 PRK07994 DNA polymerase III su 99.4 1.7E-11 3.6E-16 138.6 23.0 205 336-632 16-243 (647)
103 PRK14951 DNA polymerase III su 99.4 1.3E-11 2.9E-16 139.1 21.7 205 336-632 16-248 (618)
104 PRK05563 DNA polymerase III su 99.4 3E-11 6.6E-16 136.7 24.1 218 326-631 6-242 (559)
105 KOG0730 AAA+-type ATPase [Post 99.4 8.7E-13 1.9E-17 143.6 10.7 223 337-636 435-677 (693)
106 PRK12402 replication factor C 99.4 1.1E-11 2.4E-16 133.3 19.0 280 335-709 14-323 (337)
107 PRK14955 DNA polymerase III su 99.4 1.5E-11 3.2E-16 134.4 19.7 218 328-630 4-254 (397)
108 CHL00176 ftsH cell division pr 99.4 2.6E-12 5.7E-17 146.2 14.2 225 336-633 183-423 (638)
109 PRK14963 DNA polymerase III su 99.4 1.5E-11 3.3E-16 136.8 19.7 215 328-631 6-238 (504)
110 KOG0736 Peroxisome assembly fa 99.4 3E-12 6.6E-17 140.8 13.7 164 337-533 673-857 (953)
111 PRK14964 DNA polymerase III su 99.4 9.6E-12 2.1E-16 136.6 17.7 207 336-633 13-241 (491)
112 KOG0991 Replication factor C, 99.4 2.2E-13 4.8E-18 129.8 4.2 209 328-629 19-233 (333)
113 PRK14959 DNA polymerase III su 99.4 4.3E-11 9.4E-16 134.1 22.9 210 336-632 16-243 (624)
114 TIGR03346 chaperone_ClpB ATP-d 99.4 1.1E-11 2.5E-16 147.5 18.2 242 327-609 556-821 (852)
115 PRK14965 DNA polymerase III su 99.4 5.8E-11 1.3E-15 135.0 23.2 208 335-630 15-241 (576)
116 TIGR02639 ClpA ATP-dependent C 99.4 7.5E-12 1.6E-16 146.9 16.4 236 326-607 444-705 (731)
117 PTZ00454 26S protease regulato 99.4 4.4E-12 9.5E-17 137.1 13.3 191 371-635 181-388 (398)
118 PRK07133 DNA polymerase III su 99.4 7.1E-11 1.5E-15 134.2 23.4 208 336-631 18-241 (725)
119 PRK07764 DNA polymerase III su 99.4 5.1E-11 1.1E-15 139.1 22.4 207 335-631 14-244 (824)
120 PRK14969 DNA polymerase III su 99.4 1.1E-10 2.3E-15 131.3 23.9 208 336-631 16-242 (527)
121 TIGR01242 26Sp45 26S proteasom 99.3 4.2E-12 9.1E-17 137.5 12.1 223 337-633 123-363 (364)
122 PRK06647 DNA polymerase III su 99.3 1.1E-10 2.4E-15 131.6 23.5 207 336-631 16-242 (563)
123 PRK14953 DNA polymerase III su 99.3 9.5E-11 2.1E-15 130.1 22.4 205 336-631 16-242 (486)
124 COG0542 clpA ATP-binding subun 99.3 1.3E-11 2.9E-16 139.8 15.7 237 326-607 481-748 (786)
125 TIGR01241 FtsH_fam ATP-depende 99.3 8E-12 1.7E-16 140.7 13.6 187 371-633 90-295 (495)
126 PTZ00361 26 proteosome regulat 99.3 6.5E-12 1.4E-16 136.6 12.3 191 371-636 219-427 (438)
127 PRK06305 DNA polymerase III su 99.3 2.5E-10 5.4E-15 126.0 24.4 217 328-631 5-244 (451)
128 COG1219 ClpX ATP-dependent pro 99.3 5.5E-12 1.2E-16 125.9 7.9 163 329-491 54-237 (408)
129 TIGR03345 VI_ClpV1 type VI sec 99.3 5.9E-11 1.3E-15 140.3 18.0 238 326-608 556-825 (852)
130 PRK14970 DNA polymerase III su 99.3 6.8E-10 1.5E-14 120.7 24.8 205 336-631 17-231 (367)
131 TIGR02397 dnaX_nterm DNA polym 99.3 3.6E-10 7.8E-15 122.4 22.4 209 336-631 14-240 (355)
132 CHL00095 clpC Clp protease ATP 99.3 1.1E-10 2.3E-15 138.9 19.6 236 327-607 500-775 (821)
133 PRK14950 DNA polymerase III su 99.3 4.3E-10 9.3E-15 128.6 23.4 217 327-631 7-243 (585)
134 KOG0737 AAA+-type ATPase [Post 99.3 3.2E-12 7E-17 130.8 5.3 172 337-535 93-276 (386)
135 PRK14954 DNA polymerase III su 99.3 2.7E-10 5.9E-15 129.1 21.2 211 336-631 16-255 (620)
136 PRK09111 DNA polymerase III su 99.3 4.8E-10 1E-14 127.0 22.8 209 336-632 24-256 (598)
137 PRK08903 DnaA regulatory inact 99.3 1.1E-10 2.4E-15 118.0 15.9 174 371-631 44-224 (227)
138 TIGR03420 DnaA_homol_Hda DnaA 99.3 5E-11 1.1E-15 120.4 13.3 176 371-630 40-225 (226)
139 TIGR03689 pup_AAA proteasome A 99.2 1.2E-11 2.6E-16 136.3 8.7 139 371-534 218-379 (512)
140 COG4650 RtcR Sigma54-dependent 99.2 7.7E-12 1.7E-16 123.1 6.3 223 367-636 206-446 (531)
141 COG2812 DnaX DNA polymerase II 99.2 1.5E-10 3.2E-15 126.8 17.0 221 327-635 7-246 (515)
142 KOG1942 DNA helicase, TBP-inte 99.2 1.8E-10 3.9E-15 113.6 15.6 147 434-639 297-444 (456)
143 smart00763 AAA_PrkA PrkA AAA d 99.2 8.5E-11 1.8E-15 123.1 14.1 97 426-533 229-327 (361)
144 KOG0731 AAA+-type ATPase conta 99.2 1.2E-10 2.5E-15 131.2 15.0 189 371-634 346-554 (774)
145 PRK10865 protein disaggregatio 99.2 1.8E-10 4E-15 136.6 17.5 236 326-608 558-823 (857)
146 PRK14971 DNA polymerase III su 99.2 2E-09 4.3E-14 122.9 25.0 206 336-631 17-244 (614)
147 PRK14948 DNA polymerase III su 99.2 6.7E-10 1.4E-14 126.7 20.7 207 336-630 16-242 (620)
148 PRK05201 hslU ATP-dependent pr 99.2 5.7E-10 1.2E-14 118.5 18.7 144 433-614 249-407 (443)
149 TIGR01243 CDC48 AAA family ATP 99.2 6.7E-11 1.5E-15 139.4 12.9 161 337-530 454-632 (733)
150 TIGR02639 ClpA ATP-dependent C 99.2 9.1E-11 2E-15 137.9 13.7 204 329-581 175-403 (731)
151 PF07724 AAA_2: AAA domain (Cd 99.2 8.1E-12 1.8E-16 119.4 3.5 111 370-486 4-130 (171)
152 PRK11331 5-methylcytosine-spec 99.2 1.8E-10 3.9E-15 123.7 13.8 154 336-515 175-355 (459)
153 PRK04195 replication factor C 99.2 1.1E-09 2.3E-14 123.0 20.3 203 336-630 14-222 (482)
154 CHL00206 ycf2 Ycf2; Provisiona 99.2 1.2E-10 2.5E-15 140.4 12.7 200 371-634 1632-1878(2281)
155 TIGR00390 hslU ATP-dependent p 99.2 3.8E-10 8.2E-15 119.8 15.2 145 432-614 246-405 (441)
156 KOG0652 26S proteasome regulat 99.2 8.1E-11 1.8E-15 114.1 8.8 197 366-636 202-415 (424)
157 COG0464 SpoVK ATPases of the A 99.2 1.8E-10 3.9E-15 130.2 12.9 224 337-634 243-484 (494)
158 PF12775 AAA_7: P-loop contain 99.2 3.7E-10 8E-15 116.3 13.5 207 371-609 35-251 (272)
159 PHA02544 44 clamp loader, smal 99.1 8.3E-10 1.8E-14 117.5 16.7 204 336-629 21-227 (316)
160 KOG0733 Nuclear AAA ATPase (VC 99.1 4.3E-11 9.4E-16 128.7 6.4 167 337-537 512-696 (802)
161 COG0465 HflB ATP-dependent Zn 99.1 3.4E-10 7.4E-15 125.4 12.2 126 371-529 185-329 (596)
162 PRK08084 DNA replication initi 99.1 7.1E-10 1.5E-14 112.3 13.5 175 371-631 47-234 (235)
163 COG5271 MDN1 AAA ATPase contai 99.1 1.2E-09 2.6E-14 127.1 14.9 195 371-609 1545-1752(4600)
164 PRK11034 clpA ATP-dependent Cl 99.1 9E-10 2E-14 127.9 13.4 207 336-584 186-410 (758)
165 PRK04132 replication factor C 99.1 6.3E-10 1.4E-14 129.1 12.0 255 371-715 566-834 (846)
166 PRK10733 hflB ATP-dependent me 99.1 9.5E-10 2.1E-14 126.9 13.5 187 371-633 187-392 (644)
167 KOG0733 Nuclear AAA ATPase (VC 99.1 3.7E-10 8E-15 121.7 8.9 135 371-534 225-375 (802)
168 PRK06620 hypothetical protein; 99.0 5E-09 1.1E-13 104.2 15.2 166 371-630 46-213 (214)
169 TIGR03345 VI_ClpV1 type VI sec 99.0 1.8E-09 3.8E-14 127.9 13.3 213 330-585 181-412 (852)
170 PRK08727 hypothetical protein; 99.0 2.7E-09 5.7E-14 108.0 12.8 178 371-631 43-229 (233)
171 KOG2680 DNA helicase TIP49, TB 99.0 2.9E-09 6.3E-14 105.5 12.4 142 434-639 289-435 (454)
172 KOG0742 AAA+-type ATPase [Post 99.0 4.7E-09 1E-13 108.1 13.6 194 371-615 386-594 (630)
173 KOG0745 Putative ATP-dependent 99.0 1.6E-09 3.4E-14 112.6 9.2 116 371-486 228-358 (564)
174 cd00009 AAA The AAA+ (ATPases 99.0 1.1E-09 2.5E-14 101.7 7.6 142 340-515 2-148 (151)
175 PRK09112 DNA polymerase III su 99.0 8.2E-09 1.8E-13 110.1 14.7 187 336-607 23-242 (351)
176 CHL00095 clpC Clp protease ATP 99.0 7.2E-09 1.6E-13 123.4 15.7 201 336-585 179-403 (821)
177 KOG0739 AAA+-type ATPase [Post 99.0 4E-10 8.6E-15 111.5 4.0 157 337-526 134-305 (439)
178 COG5271 MDN1 AAA ATPase contai 99.0 7.4E-09 1.6E-13 120.8 14.6 173 368-586 887-1067(4600)
179 KOG0727 26S proteasome regulat 98.9 2.1E-09 4.5E-14 104.1 8.3 185 371-632 191-395 (408)
180 PRK07940 DNA polymerase III su 98.9 4.2E-09 9.2E-14 113.8 11.8 148 335-513 4-171 (394)
181 PF00004 AAA: ATPase family as 98.9 2.5E-10 5.5E-15 104.6 1.9 117 372-516 1-130 (132)
182 PLN00020 ribulose bisphosphate 98.9 1.7E-09 3.7E-14 112.2 7.8 140 371-533 150-311 (413)
183 PRK06893 DNA replication initi 98.9 1.2E-08 2.6E-13 103.0 13.3 179 371-631 41-228 (229)
184 PF06068 TIP49: TIP49 C-termin 98.9 7.3E-09 1.6E-13 107.4 11.5 113 434-610 279-396 (398)
185 KOG0740 AAA+-type ATPase [Post 98.9 1.8E-09 4E-14 114.8 6.2 171 336-536 153-336 (428)
186 PRK10865 protein disaggregatio 98.9 1.7E-08 3.8E-13 119.9 14.6 213 330-584 172-402 (857)
187 COG1067 LonB Predicted ATP-dep 98.8 6.3E-08 1.4E-12 109.6 17.1 225 371-634 133-400 (647)
188 PRK12422 chromosomal replicati 98.8 2.2E-08 4.8E-13 110.2 13.0 189 371-633 143-343 (445)
189 PRK00149 dnaA chromosomal repl 98.8 4.3E-08 9.3E-13 109.3 15.4 189 371-633 150-349 (450)
190 PRK09087 hypothetical protein; 98.8 2.3E-08 4.9E-13 100.4 11.6 173 371-633 46-222 (226)
191 COG1220 HslU ATP-dependent pro 98.8 4.3E-08 9.3E-13 99.2 13.3 138 433-607 250-401 (444)
192 TIGR03346 chaperone_ClpB ATP-d 98.8 1.1E-08 2.4E-13 122.1 10.5 208 336-585 173-398 (852)
193 TIGR02688 conserved hypothetic 98.8 3.7E-08 8.1E-13 104.6 13.2 215 371-636 211-436 (449)
194 KOG0990 Replication factor C, 98.8 2.2E-08 4.8E-13 100.9 10.8 164 371-609 64-236 (360)
195 PF12774 AAA_6: Hydrolytic ATP 98.8 5.5E-08 1.2E-12 97.4 13.6 185 371-614 34-228 (231)
196 TIGR01243 CDC48 AAA family ATP 98.8 1.9E-08 4.2E-13 118.7 12.1 159 337-530 179-356 (733)
197 KOG0735 AAA+-type ATPase [Post 98.8 8.1E-09 1.8E-13 113.3 7.7 163 337-533 668-848 (952)
198 PRK05642 DNA replication initi 98.8 7.8E-08 1.7E-12 97.3 13.4 178 371-631 47-233 (234)
199 PRK14086 dnaA chromosomal repl 98.8 1.3E-07 2.8E-12 105.9 16.2 189 371-633 316-515 (617)
200 PRK07471 DNA polymerase III su 98.8 8.2E-08 1.8E-12 103.0 14.0 140 336-514 19-196 (365)
201 KOG0726 26S proteasome regulat 98.8 7.5E-09 1.6E-13 102.3 5.4 191 371-637 221-430 (440)
202 TIGR00362 DnaA chromosomal rep 98.8 2.8E-08 6.1E-13 109.4 10.1 190 371-633 138-337 (405)
203 PRK14087 dnaA chromosomal repl 98.7 3.9E-08 8.5E-13 108.7 10.7 194 371-633 143-348 (450)
204 PRK14088 dnaA chromosomal repl 98.7 4.6E-08 9.9E-13 108.1 11.0 191 371-633 132-332 (440)
205 TIGR00678 holB DNA polymerase 98.7 1.8E-07 4E-12 91.5 13.9 86 432-579 95-180 (188)
206 PRK05564 DNA polymerase III su 98.7 3.3E-07 7.2E-12 97.2 16.8 135 336-513 4-147 (313)
207 PRK07399 DNA polymerase III su 98.7 6E-07 1.3E-11 94.6 17.9 139 336-513 4-177 (314)
208 TIGR03015 pepcterm_ATPase puta 98.7 4E-07 8.6E-12 94.5 15.7 201 371-634 45-267 (269)
209 KOG0728 26S proteasome regulat 98.7 6.6E-08 1.4E-12 93.7 8.8 190 371-634 183-389 (404)
210 PF05673 DUF815: Protein of un 98.6 4.3E-07 9.4E-12 89.9 13.4 165 337-533 28-207 (249)
211 KOG0744 AAA+-type ATPase [Post 98.6 3.8E-08 8.2E-13 99.0 6.0 131 371-530 179-337 (423)
212 KOG0743 AAA+-type ATPase [Post 98.6 6.5E-08 1.4E-12 102.4 7.5 129 371-535 237-385 (457)
213 KOG0729 26S proteasome regulat 98.6 5.4E-08 1.2E-12 95.1 5.7 189 371-634 213-419 (435)
214 KOG1051 Chaperone HSP104 and r 98.6 1.6E-07 3.4E-12 108.6 10.1 147 326-486 552-711 (898)
215 PRK08058 DNA polymerase III su 98.6 6.8E-07 1.5E-11 95.2 14.1 138 337-513 6-164 (329)
216 PF14532 Sigma54_activ_2: Sigm 98.6 6.8E-08 1.5E-12 89.4 5.2 109 371-515 23-133 (138)
217 TIGR00602 rad24 checkpoint pro 98.6 5.3E-07 1.1E-11 102.5 13.1 242 328-630 76-352 (637)
218 KOG1514 Origin recognition com 98.6 1.9E-06 4.1E-11 95.4 16.8 276 332-683 392-701 (767)
219 PF13337 Lon_2: Putative ATP-d 98.5 2.4E-06 5.2E-11 91.6 16.9 253 323-636 171-434 (457)
220 KOG0741 AAA+-type ATPase [Post 98.5 3.7E-08 8.1E-13 104.8 2.9 127 371-525 258-406 (744)
221 PF13654 AAA_32: AAA domain; P 98.5 3E-07 6.5E-12 102.4 9.3 167 424-632 323-505 (509)
222 PF13177 DNA_pol3_delta2: DNA 98.5 7.7E-07 1.7E-11 84.6 10.2 136 340-513 1-156 (162)
223 KOG0730 AAA+-type ATPase [Post 98.5 3E-06 6.4E-11 93.5 15.6 189 368-636 217-419 (693)
224 PF00308 Bac_DnaA: Bacterial d 98.5 1.6E-07 3.6E-12 93.8 5.5 172 371-615 36-218 (219)
225 COG0470 HolB ATPase involved i 98.4 3E-07 6.5E-12 98.2 7.2 140 337-514 2-164 (325)
226 PRK15455 PrkA family serine pr 98.4 3.7E-06 8E-11 92.7 14.6 98 426-534 248-347 (644)
227 KOG0651 26S proteasome regulat 98.4 2.1E-07 4.5E-12 93.3 4.4 117 371-516 168-300 (388)
228 COG0593 DnaA ATPase involved i 98.4 5.1E-06 1.1E-10 89.0 15.0 193 371-636 115-316 (408)
229 COG0542 clpA ATP-binding subun 98.3 3.5E-06 7.6E-11 96.4 12.5 211 333-586 168-396 (786)
230 TIGR02653 Lon_rel_chp conserve 98.3 1.2E-05 2.6E-10 89.8 16.1 252 324-635 180-442 (675)
231 KOG2035 Replication factor C, 98.3 4.3E-06 9.2E-11 82.8 10.7 55 435-516 129-183 (351)
232 PRK05707 DNA polymerase III su 98.3 3.5E-06 7.5E-11 89.3 11.1 117 371-513 24-160 (328)
233 PHA01747 putative ATP-dependen 98.3 3.5E-06 7.5E-11 87.1 10.5 133 368-512 189-337 (425)
234 KOG2227 Pre-initiation complex 98.3 1.1E-05 2.3E-10 85.8 13.5 209 436-709 259-493 (529)
235 COG2607 Predicted ATPase (AAA+ 98.3 8.6E-06 1.9E-10 79.3 11.7 120 337-486 61-184 (287)
236 smart00382 AAA ATPases associa 98.2 9.3E-07 2E-11 81.2 4.5 128 371-516 4-144 (148)
237 KOG0732 AAA+-type ATPase conta 98.2 9.5E-06 2.1E-10 94.8 11.6 160 335-538 264-452 (1080)
238 PRK08769 DNA polymerase III su 98.2 2.8E-05 6E-10 81.8 13.8 134 341-514 9-168 (319)
239 KOG1808 AAA ATPase containing 98.1 2.4E-06 5.2E-11 104.9 5.9 133 371-514 442-582 (1856)
240 PF08298 AAA_PrkA: PrkA AAA do 98.0 5.3E-06 1.1E-10 86.5 5.7 80 426-514 226-306 (358)
241 COG5245 DYN1 Dynein, heavy cha 98.0 0.00011 2.5E-09 86.8 15.1 204 371-614 1496-1717(3164)
242 PRK07993 DNA polymerase III su 98.0 6.3E-05 1.4E-09 80.0 11.9 113 371-513 26-162 (334)
243 PRK06871 DNA polymerase III su 97.9 0.0001 2.2E-09 77.7 12.8 135 342-513 8-161 (325)
244 PF05621 TniB: Bacterial TniB 97.9 9.6E-05 2.1E-09 75.8 11.6 224 329-629 27-285 (302)
245 PF00910 RNA_helicase: RNA hel 97.9 1.3E-05 2.7E-10 70.6 3.8 99 372-484 1-106 (107)
246 KOG0736 Peroxisome assembly fa 97.8 0.00015 3.3E-09 81.3 12.2 150 365-536 427-579 (953)
247 PRK06526 transposase; Provisio 97.8 4.3E-06 9.3E-11 85.3 -0.2 104 371-490 100-205 (254)
248 KOG2545 Conserved membrane pro 97.8 0.0039 8.4E-08 65.3 20.7 320 249-633 203-535 (543)
249 PRK12377 putative replication 97.8 2E-06 4.4E-11 87.1 -3.1 118 371-510 103-222 (248)
250 PRK06964 DNA polymerase III su 97.7 0.00026 5.7E-09 75.1 11.8 55 433-513 132-186 (342)
251 KOG1969 DNA replication checkp 97.7 0.00026 5.6E-09 79.2 12.0 82 371-458 328-412 (877)
252 PRK08181 transposase; Validate 97.7 1.5E-05 3.2E-10 81.9 1.2 117 371-510 108-230 (269)
253 PRK06090 DNA polymerase III su 97.7 0.00016 3.5E-09 76.0 8.9 135 342-513 9-162 (319)
254 PF03215 Rad17: Rad17 cell cyc 97.5 0.002 4.3E-08 72.4 15.4 27 371-397 47-73 (519)
255 PRK08116 hypothetical protein; 97.5 5E-05 1.1E-09 78.4 2.1 98 371-486 116-221 (268)
256 PRK08699 DNA polymerase III su 97.4 0.00016 3.4E-09 76.7 5.5 56 432-513 112-167 (325)
257 COG1484 DnaC DNA replication p 97.4 1.4E-05 3.1E-10 81.6 -2.6 101 371-490 107-213 (254)
258 KOG1970 Checkpoint RAD17-RFC c 97.4 0.0013 2.9E-08 71.5 11.7 25 372-396 113-137 (634)
259 COG1618 Predicted nucleotide k 97.3 0.0012 2.7E-08 60.7 8.7 27 369-395 5-31 (179)
260 PRK06835 DNA replication prote 97.3 3.3E-05 7.2E-10 81.7 -2.0 115 371-510 185-305 (329)
261 PF13148 DUF3987: Protein of u 97.3 0.0038 8.2E-08 68.2 14.1 183 434-637 150-364 (378)
262 PF03266 NTPase_1: NTPase; In 97.3 0.00034 7.3E-09 66.8 5.0 23 371-393 1-23 (168)
263 PRK07132 DNA polymerase III su 97.2 0.004 8.7E-08 65.0 13.0 112 371-513 20-144 (299)
264 PF05272 VirE: Virulence-assoc 97.2 0.00025 5.4E-09 69.5 3.7 98 369-487 52-151 (198)
265 PRK09183 transposase/IS protei 97.2 7.3E-05 1.6E-09 76.8 -0.5 117 371-510 104-228 (259)
266 PRK06921 hypothetical protein; 97.2 6.2E-05 1.3E-09 77.5 -1.5 24 371-394 119-142 (266)
267 KOG2170 ATPase of the AAA+ sup 97.1 0.00022 4.9E-09 71.9 2.5 124 327-459 73-204 (344)
268 PRK05917 DNA polymerase III su 97.1 0.0019 4.1E-08 66.7 8.7 110 371-514 21-150 (290)
269 KOG0735 AAA+-type ATPase [Post 97.1 0.00086 1.9E-08 74.8 6.4 143 371-535 433-588 (952)
270 PRK14700 recombination factor 97.1 0.015 3.4E-07 59.6 15.0 85 501-631 22-113 (300)
271 PF06309 Torsin: Torsin; Inte 97.1 0.00059 1.3E-08 60.7 4.2 62 327-393 16-77 (127)
272 PHA02774 E1; Provisional 97.0 0.0055 1.2E-07 68.3 11.5 97 371-486 436-533 (613)
273 PRK07952 DNA replication prote 97.0 0.00022 4.8E-09 72.1 0.7 115 371-510 101-221 (244)
274 COG3267 ExeA Type II secretory 97.0 0.0021 4.6E-08 63.8 7.4 194 371-627 53-267 (269)
275 TIGR01613 primase_Cterm phage/ 96.9 0.022 4.8E-07 60.2 15.0 117 371-510 78-196 (304)
276 COG3854 SpoIIIAA ncharacterize 96.9 0.0012 2.5E-08 64.3 4.7 27 369-395 137-163 (308)
277 PF13401 AAA_22: AAA domain; P 96.8 0.00014 3E-09 66.3 -2.3 23 371-393 6-28 (131)
278 PRK07276 DNA polymerase III su 96.8 0.017 3.6E-07 60.0 12.6 56 433-514 104-159 (290)
279 PRK05818 DNA polymerase III su 96.5 0.0062 1.3E-07 61.6 6.6 117 371-513 9-142 (261)
280 PF13604 AAA_30: AAA domain; P 96.3 0.0028 6E-08 62.3 3.0 88 371-459 20-119 (196)
281 PF03969 AFG1_ATPase: AFG1-lik 96.3 0.002 4.3E-08 69.2 1.9 25 371-395 64-88 (362)
282 PRK10536 hypothetical protein; 96.3 0.013 2.8E-07 59.2 7.6 22 371-392 76-97 (262)
283 PF13335 Mg_chelatase_2: Magne 96.1 0.019 4.1E-07 49.1 7.0 64 549-632 32-95 (96)
284 PHA00729 NTP-binding motif con 96.1 0.0061 1.3E-07 60.5 4.5 23 371-393 19-41 (226)
285 PHA02624 large T antigen; Prov 96.1 0.016 3.4E-07 65.1 7.9 113 371-515 433-558 (647)
286 KOG3347 Predicted nucleotide k 96.1 0.0048 1E-07 56.0 3.2 31 369-399 7-37 (176)
287 PF05970 PIF1: PIF1-like helic 96.1 0.0069 1.5E-07 65.6 5.0 88 371-458 24-127 (364)
288 PF13173 AAA_14: AAA domain 96.0 0.0046 1E-07 56.2 2.9 80 371-459 4-86 (128)
289 PF01443 Viral_helicase1: Vira 96.0 0.014 3E-07 58.9 6.8 84 372-458 1-87 (234)
290 TIGR01447 recD exodeoxyribonuc 96.0 0.009 1.9E-07 68.4 5.8 26 434-459 260-285 (586)
291 PRK14532 adenylate kinase; Pro 96.0 0.0063 1.4E-07 59.3 3.9 31 371-401 2-32 (188)
292 PF13207 AAA_17: AAA domain; P 96.0 0.0036 7.8E-08 56.1 2.0 24 372-395 2-25 (121)
293 TIGR02768 TraA_Ti Ti-type conj 95.8 0.0051 1.1E-07 72.7 2.9 85 371-458 370-464 (744)
294 COG0563 Adk Adenylate kinase a 95.8 0.0073 1.6E-07 58.2 3.3 30 371-400 2-31 (178)
295 PF13191 AAA_16: AAA ATPase do 95.8 0.0083 1.8E-07 58.0 3.7 47 338-393 2-48 (185)
296 PF13671 AAA_33: AAA domain; P 95.8 0.0059 1.3E-07 56.4 2.5 23 372-394 2-24 (143)
297 PRK13947 shikimate kinase; Pro 95.8 0.009 1.9E-07 57.2 3.8 31 371-401 3-33 (171)
298 PTZ00088 adenylate kinase 1; P 95.8 0.01 2.2E-07 59.7 4.3 35 368-402 5-39 (229)
299 PRK08118 topology modulation p 95.7 0.0091 2E-07 57.0 3.5 26 371-396 3-28 (167)
300 PRK04296 thymidine kinase; Pro 95.7 0.015 3.3E-07 56.8 5.1 22 372-393 5-26 (190)
301 PRK00625 shikimate kinase; Pro 95.7 0.0097 2.1E-07 57.1 3.6 29 371-399 2-30 (173)
302 PF09848 DUF2075: Uncharacteri 95.6 0.0041 8.8E-08 67.2 1.0 23 371-393 3-25 (352)
303 TIGR01448 recD_rel helicase, p 95.6 0.018 4E-07 67.8 6.4 89 371-459 340-442 (720)
304 PRK03839 putative kinase; Prov 95.6 0.011 2.4E-07 57.2 3.6 30 371-400 2-31 (180)
305 PF01695 IstB_IS21: IstB-like 95.5 0.0068 1.5E-07 58.5 2.0 117 371-510 49-171 (178)
306 PF13245 AAA_19: Part of AAA d 95.5 0.013 2.9E-07 47.7 3.4 22 372-393 13-35 (76)
307 cd00464 SK Shikimate kinase (S 95.5 0.012 2.5E-07 55.2 3.5 29 371-399 1-29 (154)
308 PRK00131 aroK shikimate kinase 95.5 0.013 2.8E-07 56.2 3.8 28 371-398 6-33 (175)
309 PRK10875 recD exonuclease V su 95.5 0.035 7.6E-07 63.9 7.8 26 434-459 266-291 (615)
310 COG4930 Predicted ATP-dependen 95.4 0.071 1.5E-06 56.0 9.1 208 370-633 226-448 (683)
311 PF13086 AAA_11: AAA domain; P 95.4 0.015 3.2E-07 58.4 4.0 22 372-393 20-41 (236)
312 TIGR01359 UMP_CMP_kin_fam UMP- 95.3 0.015 3.3E-07 56.3 3.8 27 372-398 2-28 (183)
313 PRK13949 shikimate kinase; Pro 95.3 0.016 3.4E-07 55.5 3.7 28 371-398 3-30 (169)
314 PRK14530 adenylate kinase; Pro 95.3 0.015 3.3E-07 58.0 3.8 30 371-400 5-34 (215)
315 KOG3595 Dyneins, heavy chain [ 95.3 0.028 6E-07 71.1 6.8 150 371-536 129-289 (1395)
316 PRK07261 topology modulation p 95.3 0.017 3.7E-07 55.4 3.9 24 371-394 2-25 (171)
317 PRK14531 adenylate kinase; Pro 95.1 0.02 4.3E-07 55.6 3.8 30 371-400 4-33 (183)
318 TIGR00150 HI0065_YjeE ATPase, 95.1 0.032 7E-07 50.7 4.8 25 371-395 24-48 (133)
319 KOG1968 Replication factor C, 95.1 0.041 8.9E-07 65.1 6.8 84 372-455 360-450 (871)
320 cd01428 ADK Adenylate kinase ( 95.0 0.022 4.7E-07 55.7 3.8 28 371-398 1-28 (194)
321 PF13238 AAA_18: AAA domain; P 95.0 0.015 3.2E-07 52.4 2.3 22 372-393 1-22 (129)
322 PRK13889 conjugal transfer rel 95.0 0.019 4.1E-07 69.1 3.8 86 371-458 364-458 (988)
323 cd02019 NK Nucleoside/nucleoti 95.0 0.019 4.2E-07 45.8 2.7 22 372-393 2-23 (69)
324 PRK08939 primosomal protein Dn 94.9 0.043 9.4E-07 57.7 5.8 24 371-394 158-181 (306)
325 PRK14526 adenylate kinase; Pro 94.9 0.026 5.6E-07 56.1 3.8 31 371-401 2-32 (211)
326 PRK06217 hypothetical protein; 94.8 0.028 6.1E-07 54.5 4.0 28 371-398 3-30 (183)
327 PRK05057 aroK shikimate kinase 94.7 0.032 6.9E-07 53.6 4.0 30 371-400 6-35 (172)
328 PLN02200 adenylate kinase fami 94.7 0.032 6.9E-07 56.4 4.1 31 370-400 44-74 (234)
329 cd01130 VirB11-like_ATPase Typ 94.7 0.046 1E-06 53.2 5.1 24 371-394 27-50 (186)
330 PRK14528 adenylate kinase; Pro 94.7 0.03 6.4E-07 54.5 3.7 29 371-399 3-31 (186)
331 TIGR01618 phage_P_loop phage n 94.6 0.017 3.6E-07 57.5 1.8 24 367-390 10-33 (220)
332 TIGR01360 aden_kin_iso1 adenyl 94.6 0.024 5.3E-07 55.0 2.9 27 371-397 5-31 (188)
333 cd02021 GntK Gluconate kinase 94.6 0.033 7.1E-07 52.0 3.7 24 372-395 2-25 (150)
334 TIGR01351 adk adenylate kinase 94.6 0.031 6.6E-07 55.6 3.5 29 372-400 2-30 (210)
335 COG1102 Cmk Cytidylate kinase 94.5 0.033 7.1E-07 51.6 3.3 31 372-402 3-33 (179)
336 PRK02496 adk adenylate kinase; 94.5 0.029 6.3E-07 54.5 3.2 28 371-398 3-30 (184)
337 TIGR01313 therm_gnt_kin carboh 94.5 0.03 6.4E-07 53.2 3.2 24 372-395 1-24 (163)
338 PRK13900 type IV secretion sys 94.5 0.046 1E-06 58.2 5.0 25 371-395 162-186 (332)
339 PF01057 Parvo_NS1: Parvovirus 94.5 0.12 2.6E-06 53.1 7.8 95 371-486 115-209 (271)
340 PRK06762 hypothetical protein; 94.5 0.034 7.3E-07 53.0 3.6 25 371-395 4-28 (166)
341 cd00227 CPT Chloramphenicol (C 94.5 0.029 6.3E-07 54.0 3.1 27 371-397 4-30 (175)
342 PRK13826 Dtr system oriT relax 94.5 0.039 8.5E-07 66.9 4.8 84 371-459 399-494 (1102)
343 COG0703 AroK Shikimate kinase 94.5 0.032 7E-07 52.7 3.2 29 371-399 4-32 (172)
344 PLN02459 probable adenylate ki 94.4 0.045 9.8E-07 55.7 4.5 33 370-402 30-62 (261)
345 PRK00279 adk adenylate kinase; 94.4 0.038 8.3E-07 55.1 3.9 31 371-401 2-32 (215)
346 cd02020 CMPK Cytidine monophos 94.4 0.036 7.8E-07 51.3 3.5 30 372-401 2-31 (147)
347 COG4619 ABC-type uncharacteriz 94.4 0.05 1.1E-06 50.7 4.2 24 371-394 31-54 (223)
348 PRK06547 hypothetical protein; 94.3 0.073 1.6E-06 51.0 5.3 24 371-394 17-40 (172)
349 KOG0741 AAA+-type ATPase [Post 94.2 0.022 4.7E-07 62.0 1.6 29 370-398 539-567 (744)
350 PF13555 AAA_29: P-loop contai 94.1 0.043 9.3E-07 42.5 2.8 23 371-393 25-47 (62)
351 PRK13946 shikimate kinase; Pro 94.1 0.05 1.1E-06 52.8 3.9 30 371-400 12-41 (184)
352 PRK14529 adenylate kinase; Pro 94.1 0.037 8.1E-07 55.2 3.0 28 371-398 2-29 (223)
353 PLN02674 adenylate kinase 94.0 0.05 1.1E-06 55.0 3.8 31 371-401 33-63 (244)
354 PRK10078 ribose 1,5-bisphospho 94.0 0.045 9.8E-07 53.2 3.4 26 371-396 4-29 (186)
355 PRK03731 aroL shikimate kinase 94.0 0.052 1.1E-06 51.9 3.8 29 371-399 4-32 (171)
356 PRK13948 shikimate kinase; Pro 94.0 0.057 1.2E-06 52.2 4.1 30 371-400 12-41 (182)
357 PRK13851 type IV secretion sys 93.9 0.069 1.5E-06 57.0 4.8 25 371-395 164-188 (344)
358 PF14516 AAA_35: AAA-like doma 93.9 6.6 0.00014 41.9 19.9 43 338-394 13-56 (331)
359 cd01120 RecA-like_NTPases RecA 93.9 0.04 8.7E-07 51.7 2.7 24 371-394 1-24 (165)
360 PRK08233 hypothetical protein; 93.8 0.044 9.6E-07 52.8 2.9 24 371-394 5-28 (182)
361 PF05729 NACHT: NACHT domain 93.8 0.036 7.9E-07 52.3 2.3 22 372-393 3-24 (166)
362 PRK14527 adenylate kinase; Pro 93.8 0.046 9.9E-07 53.4 3.0 25 371-395 8-32 (191)
363 TIGR02322 phosphon_PhnN phosph 93.8 0.047 1E-06 52.7 2.9 24 371-394 3-26 (179)
364 PF01637 Arch_ATPase: Archaeal 93.7 0.056 1.2E-06 54.1 3.6 45 339-395 2-46 (234)
365 PF08477 Miro: Miro-like prote 93.7 0.05 1.1E-06 48.3 2.8 23 371-393 1-23 (119)
366 PRK06581 DNA polymerase III su 93.6 0.16 3.5E-06 50.6 6.2 113 371-514 17-144 (263)
367 cd01129 PulE-GspE PulE/GspE Th 93.5 0.26 5.6E-06 50.8 8.1 24 371-394 82-105 (264)
368 PRK00300 gmk guanylate kinase; 93.5 0.06 1.3E-06 53.2 3.3 24 371-394 7-30 (205)
369 COG1126 GlnQ ABC-type polar am 93.5 0.018 3.9E-07 56.0 -0.5 22 371-392 30-51 (240)
370 PRK08485 DNA polymerase III su 93.5 0.89 1.9E-05 44.1 10.9 101 435-580 56-157 (206)
371 COG1936 Predicted nucleotide k 93.4 0.057 1.2E-06 50.7 2.7 23 371-394 2-24 (180)
372 PRK04040 adenylate kinase; Pro 93.4 0.07 1.5E-06 52.0 3.4 24 371-394 4-27 (188)
373 PF13521 AAA_28: AAA domain; P 93.3 0.056 1.2E-06 51.3 2.7 21 372-392 2-22 (163)
374 PF00519 PPV_E1_C: Papillomavi 93.3 0.48 1E-05 50.5 9.5 96 371-486 264-361 (432)
375 TIGR02782 TrbB_P P-type conjug 93.2 0.11 2.5E-06 54.5 4.9 24 371-394 134-157 (299)
376 COG1116 TauB ABC-type nitrate/ 93.2 0.063 1.4E-06 53.6 2.7 24 371-394 31-54 (248)
377 KOG1051 Chaperone HSP104 and r 93.2 0.092 2E-06 61.9 4.5 49 334-395 185-234 (898)
378 cd00071 GMPK Guanosine monopho 93.1 0.07 1.5E-06 49.1 2.8 24 372-395 2-25 (137)
379 PF13479 AAA_24: AAA domain 93.0 0.065 1.4E-06 53.4 2.7 27 369-399 3-29 (213)
380 TIGR01420 pilT_fam pilus retra 93.0 0.21 4.6E-06 53.7 6.7 24 371-394 124-147 (343)
381 cd02027 APSK Adenosine 5'-phos 93.0 0.063 1.4E-06 50.2 2.4 22 372-393 2-23 (149)
382 COG4088 Predicted nucleotide k 93.0 0.057 1.2E-06 52.0 2.0 23 372-394 4-26 (261)
383 PRK05439 pantothenate kinase; 93.0 0.16 3.5E-06 53.2 5.6 81 305-394 25-111 (311)
384 PHA02530 pseT polynucleotide k 92.9 0.089 1.9E-06 55.4 3.7 24 371-394 4-27 (300)
385 TIGR03263 guanyl_kin guanylate 92.9 0.067 1.4E-06 51.6 2.5 25 371-395 3-27 (180)
386 PRK08154 anaerobic benzoate ca 92.9 0.17 3.8E-06 53.4 5.8 28 371-398 135-162 (309)
387 PRK12339 2-phosphoglycerate ki 92.9 0.097 2.1E-06 51.3 3.6 26 371-396 5-30 (197)
388 KOG0060 Long-chain acyl-CoA tr 92.8 0.067 1.5E-06 59.1 2.6 29 366-394 458-486 (659)
389 COG1373 Predicted ATPase (AAA+ 92.8 1.3 2.8E-05 48.7 12.6 44 660-706 226-269 (398)
390 PRK01184 hypothetical protein; 92.8 0.099 2.1E-06 50.7 3.5 26 371-397 3-28 (184)
391 TIGR02788 VirB11 P-type DNA tr 92.8 0.13 2.8E-06 54.4 4.6 25 371-395 146-170 (308)
392 PRK14709 hypothetical protein; 92.8 1.5 3.2E-05 49.1 13.1 118 371-510 207-326 (469)
393 PF00437 T2SE: Type II/IV secr 92.7 0.092 2E-06 54.4 3.4 26 371-396 129-154 (270)
394 PRK12608 transcription termina 92.7 0.098 2.1E-06 55.9 3.6 23 371-393 135-157 (380)
395 PF06048 DUF927: Domain of unk 92.7 0.079 1.7E-06 55.4 2.9 72 371-457 195-266 (286)
396 PRK13833 conjugal transfer pro 92.7 0.15 3.2E-06 53.9 4.9 23 371-393 146-168 (323)
397 PTZ00301 uridine kinase; Provi 92.6 0.36 7.7E-06 47.9 7.2 23 371-393 5-27 (210)
398 PRK00889 adenylylsulfate kinas 92.5 0.085 1.8E-06 50.7 2.6 24 371-394 6-29 (175)
399 PRK14722 flhF flagellar biosyn 92.5 0.35 7.5E-06 52.1 7.5 23 371-393 139-161 (374)
400 TIGR03499 FlhF flagellar biosy 92.5 0.32 6.9E-06 50.7 7.0 23 371-393 196-218 (282)
401 PRK04182 cytidylate kinase; Pr 92.4 0.12 2.7E-06 49.6 3.7 29 371-399 2-30 (180)
402 TIGR00235 udk uridine kinase. 92.4 0.1 2.2E-06 51.7 3.1 24 371-394 8-31 (207)
403 PRK05541 adenylylsulfate kinas 92.4 0.095 2.1E-06 50.4 2.8 24 371-394 9-32 (176)
404 cd00561 CobA_CobO_BtuR ATP:cor 92.4 0.084 1.8E-06 49.6 2.3 55 433-516 95-152 (159)
405 PRK13808 adenylate kinase; Pro 92.3 0.12 2.6E-06 54.6 3.6 30 371-400 2-31 (333)
406 TIGR03574 selen_PSTK L-seryl-t 92.3 0.082 1.8E-06 54.1 2.3 23 372-394 2-24 (249)
407 cd01124 KaiC KaiC is a circadi 92.3 0.091 2E-06 50.9 2.6 21 372-392 2-22 (187)
408 PLN02165 adenylate isopentenyl 92.3 0.14 3.1E-06 53.9 4.1 29 371-399 45-73 (334)
409 PRK13894 conjugal transfer ATP 92.3 0.18 3.9E-06 53.4 4.9 23 371-393 150-172 (319)
410 TIGR02173 cyt_kin_arch cytidyl 92.2 0.11 2.5E-06 49.4 3.1 29 371-399 2-30 (171)
411 cd01131 PilT Pilus retraction 92.2 0.097 2.1E-06 51.5 2.7 24 371-394 3-26 (198)
412 PRK05480 uridine/cytidine kina 92.2 0.12 2.5E-06 51.4 3.2 24 371-394 8-31 (209)
413 cd02023 UMPK Uridine monophosp 92.2 0.1 2.2E-06 51.3 2.8 22 372-393 2-23 (198)
414 TIGR00376 DNA helicase, putati 92.2 0.12 2.7E-06 60.0 3.9 22 371-392 175-196 (637)
415 KOG2228 Origin recognition com 92.1 4.3 9.4E-05 42.5 14.3 22 371-392 51-72 (408)
416 TIGR02237 recomb_radB DNA repa 92.1 0.12 2.7E-06 51.1 3.3 22 371-392 14-35 (209)
417 TIGR03878 thermo_KaiC_2 KaiC d 92.0 0.12 2.6E-06 53.1 3.2 25 366-391 34-58 (259)
418 cd04177 RSR1 RSR1 subgroup. R 91.9 0.12 2.5E-06 49.2 2.8 23 370-392 2-24 (168)
419 COG1120 FepC ABC-type cobalami 91.9 0.11 2.4E-06 52.7 2.6 24 371-394 30-53 (258)
420 PF01926 MMR_HSR1: 50S ribosom 91.9 0.099 2.1E-06 46.3 2.1 21 371-391 1-21 (116)
421 PRK06851 hypothetical protein; 91.9 0.11 2.3E-06 55.8 2.6 23 371-393 216-238 (367)
422 PRK12678 transcription termina 91.9 0.21 4.6E-06 55.8 5.0 23 371-393 418-440 (672)
423 PF01726 LexA_DNA_bind: LexA D 91.8 0.68 1.5E-05 36.4 6.4 56 652-711 7-63 (65)
424 PF00406 ADK: Adenylate kinase 91.8 0.079 1.7E-06 49.5 1.4 23 374-396 1-23 (151)
425 PF03193 DUF258: Protein of un 91.7 0.34 7.3E-06 45.6 5.5 23 371-393 37-59 (161)
426 PRK08356 hypothetical protein; 91.7 0.19 4.2E-06 49.2 4.1 21 371-391 7-27 (195)
427 PRK09825 idnK D-gluconate kina 91.7 0.14 2.9E-06 49.4 2.9 25 371-395 5-29 (176)
428 COG3839 MalK ABC-type sugar tr 91.6 0.11 2.4E-06 54.8 2.5 23 371-393 31-53 (338)
429 PF00005 ABC_tran: ABC transpo 91.6 0.085 1.9E-06 48.2 1.5 23 371-393 13-35 (137)
430 COG2766 PrkA Putative Ser prot 91.6 0.59 1.3E-05 51.6 7.9 97 427-534 250-348 (649)
431 TIGR00017 cmk cytidylate kinas 91.5 0.18 4E-06 50.3 3.8 31 371-401 4-34 (217)
432 PLN02199 shikimate kinase 91.5 0.27 5.9E-06 50.8 5.1 29 371-399 104-132 (303)
433 PRK12338 hypothetical protein; 91.5 0.2 4.3E-06 52.6 4.1 28 371-398 6-33 (319)
434 TIGR00554 panK_bact pantothena 91.5 0.3 6.6E-06 50.8 5.4 24 371-394 64-87 (290)
435 PRK14737 gmk guanylate kinase; 91.4 0.14 3.1E-06 49.7 2.8 25 371-395 6-30 (186)
436 KOG0922 DEAH-box RNA helicase 91.4 0.52 1.1E-05 53.2 7.3 22 371-392 68-90 (674)
437 cd00820 PEPCK_HprK Phosphoenol 91.4 0.13 2.9E-06 44.8 2.2 20 371-390 17-36 (107)
438 KOG0064 Peroxisomal long-chain 91.3 0.14 3E-06 56.0 2.8 29 367-395 506-534 (728)
439 cd04137 RheB Rheb (Ras Homolog 91.3 0.15 3.1E-06 49.1 2.7 22 371-392 3-24 (180)
440 COG3842 PotA ABC-type spermidi 91.3 0.14 3E-06 54.5 2.7 22 372-393 34-55 (352)
441 TIGR00231 small_GTP small GTP- 91.3 0.15 3.2E-06 47.0 2.7 23 370-392 2-24 (161)
442 cd04119 RJL RJL (RabJ-Like) su 91.2 0.15 3.2E-06 48.0 2.7 22 371-392 2-23 (168)
443 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.2 0.14 2.9E-06 51.2 2.5 23 371-393 32-54 (218)
444 cd01128 rho_factor Transcripti 91.2 0.16 3.4E-06 51.8 2.9 25 371-395 18-42 (249)
445 cd04155 Arl3 Arl3 subfamily. 91.2 0.14 3E-06 48.7 2.5 24 369-392 14-37 (173)
446 PRK09376 rho transcription ter 91.2 0.1 2.3E-06 55.9 1.7 23 371-393 171-193 (416)
447 PRK10646 ADP-binding protein; 91.1 0.34 7.4E-06 45.2 4.8 24 371-394 30-53 (153)
448 COG1485 Predicted ATPase [Gene 91.1 0.062 1.3E-06 56.2 -0.1 25 371-395 67-91 (367)
449 COG4178 ABC-type uncharacteriz 91.1 0.16 3.5E-06 57.5 3.1 26 371-396 421-446 (604)
450 cd03281 ABC_MSH5_euk MutS5 hom 91.0 0.31 6.8E-06 48.5 4.8 21 371-391 31-51 (213)
451 PF00485 PRK: Phosphoribulokin 91.0 0.12 2.6E-06 50.6 1.9 23 372-394 2-24 (194)
452 cd01394 radB RadB. The archaea 91.0 0.18 4E-06 50.3 3.2 23 371-393 21-43 (218)
453 cd02024 NRK1 Nicotinamide ribo 90.9 0.23 5.1E-06 48.2 3.7 23 372-394 2-24 (187)
454 PRK13695 putative NTPase; Prov 90.9 0.18 3.9E-06 48.4 3.0 23 371-393 2-24 (174)
455 cd04124 RabL2 RabL2 subfamily. 90.9 0.17 3.6E-06 47.8 2.7 21 371-391 2-22 (161)
456 PF01583 APS_kinase: Adenylyls 90.9 0.15 3.2E-06 47.8 2.2 23 371-393 4-26 (156)
457 PRK05800 cobU adenosylcobinami 90.9 0.26 5.6E-06 47.1 3.9 24 371-394 3-26 (170)
458 PRK12726 flagellar biosynthesi 90.8 0.57 1.2E-05 50.3 6.7 23 371-393 208-230 (407)
459 PRK04220 2-phosphoglycerate ki 90.8 0.52 1.1E-05 49.1 6.3 27 370-396 93-119 (301)
460 PRK07078 hypothetical protein; 90.8 19 0.00041 42.9 19.8 24 372-395 494-517 (759)
461 smart00175 RAB Rab subfamily o 90.8 0.17 3.7E-06 47.5 2.6 22 371-392 2-23 (164)
462 cd01867 Rab8_Rab10_Rab13_like 90.8 0.17 3.8E-06 47.9 2.7 23 370-392 4-26 (167)
463 cd03269 ABC_putative_ATPase Th 90.7 0.16 3.5E-06 50.3 2.6 23 371-393 28-50 (210)
464 cd02022 DPCK Dephospho-coenzym 90.7 0.25 5.5E-06 47.6 3.8 28 372-400 2-29 (179)
465 KOG2383 Predicted ATPase [Gene 90.7 0.15 3.2E-06 54.1 2.2 24 371-394 116-139 (467)
466 PF02367 UPF0079: Uncharacteri 90.7 0.37 8E-06 43.2 4.5 25 371-395 17-41 (123)
467 PRK05537 bifunctional sulfate 90.7 0.33 7.1E-06 55.7 5.2 52 334-395 367-418 (568)
468 cd00157 Rho Rho (Ras homology) 90.7 0.18 3.9E-06 47.7 2.7 22 371-392 2-23 (171)
469 cd01878 HflX HflX subfamily. 90.6 0.18 3.9E-06 49.7 2.7 25 368-392 40-64 (204)
470 cd03258 ABC_MetN_methionine_tr 90.6 0.17 3.6E-06 51.1 2.6 24 371-394 33-56 (233)
471 PRK12723 flagellar biosynthesi 90.6 0.49 1.1E-05 51.4 6.2 23 371-393 176-198 (388)
472 PRK09361 radB DNA repair and r 90.6 0.2 4.4E-06 50.3 3.1 22 371-392 25-46 (225)
473 cd04113 Rab4 Rab4 subfamily. 90.6 0.18 4E-06 47.3 2.7 22 371-392 2-23 (161)
474 cd04138 H_N_K_Ras_like H-Ras/N 90.6 0.19 4.2E-06 46.9 2.8 21 371-391 3-23 (162)
475 cd03246 ABCC_Protease_Secretio 90.6 0.2 4.3E-06 48.0 2.9 24 371-394 30-53 (173)
476 TIGR02315 ABC_phnC phosphonate 90.6 0.17 3.7E-06 51.4 2.6 23 371-393 30-52 (243)
477 TIGR02673 FtsE cell division A 90.6 0.17 3.8E-06 50.3 2.6 23 371-393 30-52 (214)
478 PRK13975 thymidylate kinase; P 90.5 0.19 4.2E-06 49.1 2.8 24 371-394 4-27 (196)
479 cd04160 Arfrp1 Arfrp1 subfamil 90.5 0.17 3.8E-06 47.7 2.4 23 371-393 1-23 (167)
480 cd02028 UMPK_like Uridine mono 90.5 0.17 3.8E-06 48.8 2.4 23 372-394 2-24 (179)
481 cd00154 Rab Rab family. Rab G 90.4 0.19 4.2E-06 46.4 2.7 22 371-392 2-23 (159)
482 TIGR03608 L_ocin_972_ABC putat 90.4 0.18 4E-06 49.7 2.6 23 371-393 26-48 (206)
483 PF10662 PduV-EutP: Ethanolami 90.4 0.18 3.9E-06 46.3 2.3 22 371-392 3-24 (143)
484 PRK05703 flhF flagellar biosyn 90.4 0.55 1.2E-05 51.8 6.5 23 371-393 223-245 (424)
485 cd03228 ABCC_MRP_Like The MRP 90.3 0.2 4.4E-06 47.9 2.7 24 371-394 30-53 (171)
486 cd04136 Rap_like Rap-like subf 90.3 0.21 4.5E-06 46.9 2.8 21 371-391 3-23 (163)
487 TIGR00960 3a0501s02 Type II (G 90.3 0.18 4E-06 50.2 2.5 23 371-393 31-53 (216)
488 cd01918 HprK_C HprK/P, the bif 90.3 0.23 5E-06 46.1 2.9 22 371-392 16-37 (149)
489 PF00931 NB-ARC: NB-ARC domain 90.3 0.29 6.2E-06 51.0 4.1 22 371-392 21-42 (287)
490 cd04156 ARLTS1 ARLTS1 subfamil 90.2 0.18 3.9E-06 47.2 2.2 22 371-392 1-22 (160)
491 PRK14738 gmk guanylate kinase; 90.2 0.21 4.6E-06 49.4 2.8 24 371-394 15-38 (206)
492 cd01123 Rad51_DMC1_radA Rad51_ 90.2 0.22 4.9E-06 50.2 3.1 22 371-392 21-42 (235)
493 PRK05986 cob(I)alamin adenolsy 90.2 0.16 3.5E-06 49.1 1.9 23 371-393 24-46 (191)
494 cd03292 ABC_FtsE_transporter F 90.2 0.2 4.3E-06 49.8 2.6 23 371-393 29-51 (214)
495 cd03256 ABC_PhnC_transporter A 90.2 0.19 4.2E-06 50.9 2.6 23 371-393 29-51 (241)
496 PF00735 Septin: Septin; Inte 90.1 0.14 3.1E-06 53.1 1.6 24 370-393 5-28 (281)
497 cd03262 ABC_HisP_GlnQ_permease 90.1 0.2 4.3E-06 49.8 2.6 23 371-393 28-50 (213)
498 cd01862 Rab7 Rab7 subfamily. 90.1 0.2 4.3E-06 47.5 2.5 22 371-392 2-23 (172)
499 cd03216 ABC_Carb_Monos_I This 90.1 0.21 4.5E-06 47.5 2.5 24 371-394 28-51 (163)
500 COG0802 Predicted ATPase or ki 90.1 0.43 9.3E-06 43.9 4.4 24 371-394 27-50 (149)
No 1
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-140 Score=1082.45 Aligned_cols=713 Identities=59% Similarity=0.956 Sum_probs=675.6
Q ss_pred CccCHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHcCCcEEEEehhhhhcccCCCHHHHHHHHHhHHHHHHHHHHHHH
Q 005024 2 TIFDLDADKAFAKEFISNFADANGDAKYANILQDVANRKIRSIQIDLEDLFNYKDFDEEFFRRVTENTRRYIGIFASAID 81 (718)
Q Consensus 2 ~~~~~~~~~~~~~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~f~~~d~~La~~i~~np~~~~~~~~~a~~ 81 (718)
...+|..++++.++|+.+|.+.+...+|+++++++.++++..++||++||.+|.. ..+|..+|..|..+|..+|..+++
T Consensus 6 ~~~D~~~dk~~~~~fl~e~~e~~~~~kY~~~L~eia~Re~~ai~vdldDi~~~d~-~~~l~~~i~~Na~ry~~lf~~~vd 84 (721)
T KOG0482|consen 6 APIDYAADKNKIKKFLDEFYEDNELGKYMNQLQEIANREQNAIEVDLDDIAEYDD-ATELVGAIESNARRYVELFSDAVD 84 (721)
T ss_pred ccchhhhhhHHHHHHHHhhhccCchhHHHHHHHHHhcccceeEEEehHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999887767799999999999999999999999999942 357999999999999999999999
Q ss_pred hhCCCCCCCCC--CchhhHHhhhccccCCCCCCC-CCCCCCCCcccceEEEEEEeeCCCCccccccccCcCCCCcEEEEE
Q 005024 82 ELLPEPTEAFP--DDDHDILMTQRSEDGADNTDG-ADPRQKMPPEIKRYYEVYIRASSKGRPFSIREVKASYIGQLVRIS 158 (718)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~l~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~ 158 (718)
++++++...++ ++.+|++++||...+++.... .++.+.+|+.|.++|+++|++....++..+|++++.+||+||+|+
T Consensus 85 ellp~~~~~~~~~~d~lDv~~~qR~~~~~~~~p~~~~~~~~fP~~l~rryelyfk~~~~~kp~svR~vka~~iG~Lvtvr 164 (721)
T KOG0482|consen 85 ELLPEPTGEIPYGDDVLDVYMEQRLMRNETRDPELEDKREQFPSELLRRYELYFKPLSNNKPYSVREVKADHIGSLVTVR 164 (721)
T ss_pred HhcCCcccccccCccHHHHHHHHHHHhccccCccccchhhcCCHHHhhhheeeecccccCCccchhhhhhhhccceEEEE
Confidence 99999986666 899999999997766544442 566778999999999999999999999999999999999999999
Q ss_pred eEEEEeecceeeeeeeeeecCCCCceEEEeecceeecCCCCCCCccccCCCCCCceEeeeccceeccceeeeeeeccccC
Q 005024 159 GIITRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLFECPSQRCKINKTKGNLVLQLRASKFLKFQEAKIQELAEHV 238 (718)
Q Consensus 159 G~V~~~s~v~p~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~ 238 (718)
|+|||+|+|||.+..++|.|..||.++|+++.+.+|+|+..|||..|+.++..|.+.+..+.|+|+.+|++++||.++++
T Consensus 165 GIVTR~S~VKP~m~VatYtCd~CGaE~yQeV~s~~F~pl~~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~kmQEls~qV 244 (721)
T KOG0482|consen 165 GIVTRVSDVKPSMVVATYTCDQCGAETYQEVNSRTFTPLSECPSEECRTNKAGGRLYLQTRGSKFIKFQEVKMQELSDQV 244 (721)
T ss_pred EEEEeccccccceEEEEEecccccHhhhccccCccccchhhCChHHhhhcccCCeEEEEecccccchhhhhhHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeccccccccCCCCEEEEEEEEeeccCCCccccccccccceeeeeEEEEeeccccccccCChHHHHHHH
Q 005024 239 PKGHIPRTMTVHLRGELTRKVAPGDVVEFSGIFLPIPYTGFRALRAGLVADTYLEAMSVTHFKKKYEEYELRGDEEEHIS 318 (718)
Q Consensus 239 ~~g~~P~~i~v~l~~dlv~~~~pGd~V~v~GI~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~ 318 (718)
|.|++||+++|.++++++.+|+|||+|.|+||+.|.+..|++..+++++.++|++|..|...++.+.+.+++.+...++.
T Consensus 245 PvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aGLladtYLeAh~v~~~nk~~~~~~~~~~~~~~~~ 324 (721)
T KOG0482|consen 245 PVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAGLLADTYLEAHRVVQINKKYDNIEKTGELEPEEL 324 (721)
T ss_pred CCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHhhhHHHHHHHHhhhhhhccccccccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888888888888888
Q ss_pred HHhhChhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 319 RLAEDGDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 319 ~~~~~~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
++....++|++++.||+|+|||++++|+|++++|+||..+...+|+++||||||+|+|+||++||+|+++|.+++||++|
T Consensus 325 ~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvY 404 (721)
T KOG0482|consen 325 ELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVY 404 (721)
T ss_pred HHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccce
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 399 TTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
++|.+++++|||+++.+|+.+|+..++.|++++||+|||||||||||.+.++.++|++||||+++|+|+|+.+++|+||+
T Consensus 405 TTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~s 484 (721)
T KOG0482|consen 405 TTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTS 484 (721)
T ss_pred ecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYI 558 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i 558 (718)
|+||+||.+||||+..++.+||+||.|||||||+++++.|.|+.+.|..+|+||...|++.+.|..++.|++.+.+|.||
T Consensus 485 ILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI 564 (721)
T KOG0482|consen 485 ILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYI 564 (721)
T ss_pred hhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcc
Q 005024 559 SAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKF 638 (718)
Q Consensus 559 ~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~ 638 (718)
..+++..|.+++++.++|...|.++|+... ........|+|.|.+++|+|.|+|+|++++.|..+||.+|+++|+.++.
T Consensus 565 ~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~-~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK~ 643 (721)
T KOG0482|consen 565 SLAKRKNPVVPEALADYITGAYVELRREAR-SSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSKD 643 (721)
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhh-ccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhhc
Confidence 999999999999999999999999999864 2334568899999999999999999999999999999999999999999
Q ss_pred cccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEeCCeeEEEee
Q 005024 639 SLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFI 716 (718)
Q Consensus 639 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~~~~i~~~ 716 (718)
++...............++.+|++++.+.++..+++..+.+.+...|+++.++.++|++|.+.|+|+++..+..|+|+
T Consensus 644 sL~~~~~~~~~~~~~~~if~iirel~~e~g~~~v~~s~~~~r~~~kGfs~~ql~~~i~ey~~lnVw~~~~~~~~I~f~ 721 (721)
T KOG0482|consen 644 SLYQDDGQKEDTSATDAIFAIIRELAGEGGKRCVKLSNAEQRCVRKGFSEAQLKKCIDEYAELNVWQVNNERTTITFV 721 (721)
T ss_pred ccccccccccccchHHHHHHHHHHHHhhcCCceeeHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEecCceeEeeC
Confidence 988764444445567889999999998777777999999999999999999999999999999999999999999985
No 2
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=3.2e-118 Score=942.13 Aligned_cols=595 Identities=36% Similarity=0.607 Sum_probs=543.4
Q ss_pred HHHHHHHHHHHhcccCCCcchHHHHHHHHHHcCCcEEEEehhhhhc-ccCCCHHHHHHHHHhHHHHHHHHHHHHHhhCCC
Q 005024 8 ADKAFAKEFISNFADANGDAKYANILQDVANRKIRSIQIDLEDLFN-YKDFDEEFFRRVTENTRRYIGIFASAIDELLPE 86 (718)
Q Consensus 8 ~~~~~~~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~-f~~~d~~La~~i~~np~~~~~~~~~a~~~~~~~ 86 (718)
...+.|.+||+.|.+..++.+|...+..+...+..+|.||+.||.. | ++.|+..|.+||.++++++..|+++++.+
T Consensus 24 ~~~e~~~~Fle~~~~~~~e~~~~~~i~~~~~~~~~tl~vd~~~l~~~~---~~~la~~l~~~~~r~~p~m~~av~~~l~d 100 (764)
T KOG0480|consen 24 RVEEEFLQFLESFKVQAGEKKYLQSIELLDRPERNTLLVDFQHLSKQY---NQNLATALEENYYRVLPCMCRAVHKVLKD 100 (764)
T ss_pred chHHHHHHHHHHhhccccchhhHHHHHhhccCCCceEEEEHHHHHhhh---hHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence 4678899999999988888999999999999999999999999999 8 89999999999999999999999998775
Q ss_pred CCCCCCCchhhHHhhhccccCCCCCCCCCCCCCCCcccceEEEEEEeeCCCCccccccccCcCCCCcEEEEEeEEEEeec
Q 005024 87 PTEAFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEIKRYYEVYIRASSKGRPFSIREVKASYIGQLVRISGIITRCSD 166 (718)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~G~V~~~s~ 166 (718)
... .+..+...++++|.|+|.. ..+|+|+++.+|+||+++|+|+|+|+
T Consensus 101 ~~~------------------------------~~~~~~~~~~v~f~nlp~~--~~irdlra~~iG~Lv~isGtVvRts~ 148 (764)
T KOG0480|consen 101 WST------------------------------NSGALVKKIYVRFYNLPTR--HKIRDLRAARIGKLVRISGTVVRTSP 148 (764)
T ss_pred ccc------------------------------cccccceeEEEEEeccccc--cccccccHhhhcceEEEEEEEEEeec
Confidence 111 1122355789999999865 79999999999999999999999999
Q ss_pred ceeeeeeeeeecCCCCceEEEeecceeecCCCCCCCccccCCCCCCceEeeeccceeccceeeeeeeccccCCCCCCCce
Q 005024 167 VKPLMQVAVYTCEECGFEIYQEVTARVFMPLFECPSQRCKINKTKGNLVLQLRASKFLKFQEAKIQELAEHVPKGHIPRT 246 (718)
Q Consensus 167 v~p~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~P~~ 246 (718)
|+|.++.++|.|..||..+.....++.|++|..||++.|.+.. .|.++.++|.|.|||+|||||+.++.|.|++||+
T Consensus 149 VrPelt~~~F~C~~C~t~i~~v~q~fkYt~Pt~C~np~C~nrr---~f~l~~~~s~f~D~QkIrIQE~~~E~p~GsiPRt 225 (764)
T KOG0480|consen 149 VRPELTKMTFLCEKCGTVIRNVEQQFKYTEPTKCPNPVCSNRR---SFTLDRSSSRFLDWQKIRIQELQAEIPRGSIPRT 225 (764)
T ss_pred ccceeeeeEEEHhhCCCeeccchhcCccCCCccCCCccccCCc---eeeeecccceeeeeeeeehhhhhhhCCCCCCCce
Confidence 9999999999999999999877778999999999999997543 5889999999999999999999999999999999
Q ss_pred EEEEeccccccccCCCCEEEEEEEEeeccC------CCcccccc----ccccceeeeeEEEEeecccc------------
Q 005024 247 MTVHLRGELTRKVAPGDVVEFSGIFLPIPY------TGFRALRA----GLVADTYLEAMSVTHFKKKY------------ 304 (718)
Q Consensus 247 i~v~l~~dlv~~~~pGd~V~v~GI~~~~~~------~~~~~~~~----~~~~~~~l~~~~i~~~~~~~------------ 304 (718)
++|+|++|+|++|+|||+|.+|||+.+.|+ .+.+..++ +...-+++++++|...+.+.
T Consensus 226 vdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~~ 305 (764)
T KOG0480|consen 226 VDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQSTLA 305 (764)
T ss_pred eEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhcccccc
Confidence 999999999999999999999999998775 12221111 11245688899987766541
Q ss_pred --c------cccCChHHHHHHHHHhhChhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecC
Q 005024 305 --E------EYELRGDEEEHISRLAEDGDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMG 376 (718)
Q Consensus 305 --~------~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G 376 (718)
+ ...+|.++...+.+++.++++|..|+.|++|.|||++.+|.+|+++|+||+.+...+|..+||||||+++|
T Consensus 306 ~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVG 385 (764)
T KOG0480|consen 306 VEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVG 385 (764)
T ss_pred cchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeC
Confidence 0 12367888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHh
Q 005024 377 DPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEV 456 (718)
Q Consensus 377 ~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~ 456 (718)
+||||||+++++++..+||++|++|+.++++|||+++++|+.+|+|.+++|++++||+|||||||||||+..+|.+|||+
T Consensus 386 DPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEA 465 (764)
T KOG0480|consen 386 DPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEA 465 (764)
T ss_pred CCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhc
Q 005024 457 MEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVH 536 (718)
Q Consensus 457 me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~ 536 (718)
||||+++|+|+|...++|+|.+||||+||..|+||..+++.+|+++++|++|||||+|++.|.+++..|..|++||+..|
T Consensus 466 MEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 466 MEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred HHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhh-hhcCCCCcccCHHHHHHHHHHHHHHHHh
Q 005024 537 QNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEE-AKSNTPHSYTTVRTLLSILRISAALARL 615 (718)
Q Consensus 537 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~-~~~~~~~~~~s~R~l~~lirla~a~A~l 615 (718)
.......+...+++.+.+++|+.|||.+.|.++.++.+.|.++|..+|... +.....+|++|+|+||+|||+++|+||+
T Consensus 546 ~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~ 625 (764)
T KOG0480|consen 546 RGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARV 625 (764)
T ss_pred ccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhh
Confidence 776655555568999999999999999999999999999999999999987 3334678999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHhhhcccc
Q 005024 616 RFSETVAQSDVDEALRLMQMSKFSL 640 (718)
Q Consensus 616 ~~~~~V~~~dv~~ai~l~~~~~~~~ 640 (718)
+.++.||++||.+|++++..|....
T Consensus 626 ~~~devt~~~v~ea~eLlk~Siv~v 650 (764)
T KOG0480|consen 626 ECRDEVTKEDVEEAVELLKKSIVRV 650 (764)
T ss_pred hhhhhccHHHHHHHHHHHHhhheee
Confidence 9999999999999999999987654
No 3
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-112 Score=941.97 Aligned_cols=654 Identities=43% Similarity=0.652 Sum_probs=568.4
Q ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHcCCcEEEEehhhhhcccCCCHHHHHHHHHhHHHHHHHHHHHHHhhCCCCC
Q 005024 9 DKAFAKEFISNFADANGDAKYANILQDVANRKIRSIQIDLEDLFNYKDFDEEFFRRVTENTRRYIGIFASAIDELLPEPT 88 (718)
Q Consensus 9 ~~~~~~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~f~~~d~~La~~i~~np~~~~~~~~~a~~~~~~~~~ 88 (718)
..+.|+ | . |...+ ...|.+.+ .+......++.|++.|+..| +++||..+.++|.+++++++.+++++.....
T Consensus 3 ~~~~~~-~-~-~~~~~-~~~~~~~~-~~~~~~~~s~~v~~~~~~~~---~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~ 74 (682)
T COG1241 3 IAELFR-L-R-FKWED-ILEYAENI-ILDKIINRSLEVDLSDLEEY---DPELAGLLLENPEEIIPLFEKALDEIALLLF 74 (682)
T ss_pred hhhhhh-h-h-cccch-HHHHHHHh-hhhhccceEEEEEhHHhhcc---cHHHHHHHHhChHHHHHHHHHHHHHHHHhcC
Confidence 456666 3 3 54433 55677754 23333344999999999999 9999999999999999999999999865332
Q ss_pred CCCCCchhhHHhhhccccCCCCCCCCCCCCCCCcccceEEEEEEeeCCCCccccccccCcCCCCcEEEEEeEEEEeecce
Q 005024 89 EAFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEIKRYYEVYIRASSKGRPFSIREVKASYIGQLVRISGIITRCSDVK 168 (718)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~G~V~~~s~v~ 168 (718)
..+. . ..+.|+++|.+++.. .++|+|++.|+||||+|+|+|+|+|.|+
T Consensus 75 ~~~~-----------------------------~-~~~~~~~~~~~~~~~--~~iR~l~s~~igkLV~v~GiV~r~s~v~ 122 (682)
T COG1241 75 PEVD-----------------------------R-SLKKIHVRFKNLPNR--LSIRELRSEHIGKLVSVEGIVTRASEVR 122 (682)
T ss_pred cccc-----------------------------c-cccceEEEecCCcCC--cChhhCchhhCCcEEEEEEEEEeccccc
Confidence 2110 0 014689999988765 5999999999999999999999999999
Q ss_pred eeeeeeeeecCCCCceEEEeecceeecCCCCCCCccccCCCCCCceEeeeccceeccceeeeeeeccccCCCCCCCceEE
Q 005024 169 PLMQVAVYTCEECGFEIYQEVTARVFMPLFECPSQRCKINKTKGNLVLQLRASKFLKFQEAKIQELAEHVPKGHIPRTMT 248 (718)
Q Consensus 169 p~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~P~~i~ 248 (718)
|++++++|.|.+||+.+...+....+.+|..|++ | ....+++|.+.++.|.|+|||+|+|||+|+.+|+|++|++++
T Consensus 123 p~~~~~~~~C~~Cg~~~~~~~~~~~~~~~~~C~~--~-~~~~~~~~~~~~~~s~f~d~Q~vkiQE~pe~~p~g~~Prs~~ 199 (682)
T COG1241 123 PRLKKAVFECPKCGREVEVEQSEFRVEPPRECEN--C-GKFGKGPLKLVPRKSEFIDFQKVKIQELPELVPGGELPRSIE 199 (682)
T ss_pred ceeEEEEEEcCCCCCEEEEEeccccccCCccCCC--c-cccCCCceEEecCcceeeeceEEEEecCcccCCCCCCCceEE
Confidence 9999999999999999998888777888889996 6 222567899999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCEEEEEEEEeeccCCCccccccccccceeeeeEEEEeeccccccccCChHHHHHHHHHhhChhHHH
Q 005024 249 VHLRGELTRKVAPGDVVEFSGIFLPIPYTGFRALRAGLVADTYLEAMSVTHFKKKYEEYELRGDEEEHISRLAEDGDIYN 328 (718)
Q Consensus 249 v~l~~dlv~~~~pGd~V~v~GI~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 328 (718)
|+|++|||+++.|||+|.||||++..+.......+.+.++++|+++++|++.... ....+++++.+.|.++++++++|+
T Consensus 200 vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~-~~~~~t~ed~e~i~elak~~~i~~ 278 (682)
T COG1241 200 VILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGRRKGPVFEIYLEANSVEKLDKR-EEVEITEEDEEEIKELAKRPDIYD 278 (682)
T ss_pred EEEecCcccccCCCCEEEEEEEEecccccccccccCCceEEEEEEEEEEEeccch-hhccCCHHHHHHHHHHhcCCcHHH
Confidence 9999999999999999999999998874221112345679999999999987765 567789999999999999999999
Q ss_pred HHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCc
Q 005024 329 KLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVG 408 (718)
Q Consensus 329 ~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~ 408 (718)
.+++|++|+|+|++++|+||+++|+||+.+..++|+++||||||||+|+||||||+|++++++.+|+++|++|++++++|
T Consensus 279 ~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~G 358 (682)
T COG1241 279 ILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAG 358 (682)
T ss_pred HHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCC
Q 005024 409 LTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWG 488 (718)
Q Consensus 409 l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g 488 (718)
||+++.+++.+|+|.+++|++++||+|||||||||+|+..++++||++||||+++++|+|+.+++|+||+|+||+||.+|
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~G 438 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFG 438 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCC-------CCCCCCHHHHHHHHHHH
Q 005024 489 RYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPAL-------GFTPLEPAILRAYISAA 561 (718)
Q Consensus 489 ~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~-------~~~~~~~~~l~~~i~~~ 561 (718)
+||+++++.+|++||++|||||||+|++.|.|+.+.|+.+|+|++..|........ ....-+.++|++|+.||
T Consensus 439 ryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YA 518 (682)
T COG1241 439 RYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYA 518 (682)
T ss_pred cCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999965433211 00001588999999999
Q ss_pred Hh-cCCCCCHHHHHHHHHHHHHhhHhhhh-cCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccc
Q 005024 562 RR-LSPCVPRELEEYIAAAYSNIRQEEAK-SNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFS 639 (718)
Q Consensus 562 ~~-~~p~ls~~~~~~l~~~y~~lr~~~~~-~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~ 639 (718)
|+ +.|.++++|.+.|.++|..+|+.... ......|+|+|+|++++|+|+|+|++++++.|+++||.+|++++..+...
T Consensus 519 R~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~ 598 (682)
T COG1241 519 RKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKT 598 (682)
T ss_pred hccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 98 67999999999999999999997421 14557899999999999999999999999999999999999999988655
Q ss_pred cccccc-------------ccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEE
Q 005024 640 LYSDDR-------------QRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQI 706 (718)
Q Consensus 640 ~~~~~~-------------~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~ 706 (718)
+..++. +....+....++..|+++...... ...++.+.+. |+++..++++|++|.+.|.|..
T Consensus 599 v~~dp~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~e~~~~~~~---~~~~~~~~~~--g~~~~~~e~~l~~l~~~g~i~~ 673 (682)
T COG1241 599 VAVDPEKGKIDIDIIEPGKSKSKRDKIEKVLDIIKELVERSED---PVEEIIEEAE--GISEKEVEEALEKLKKKGDILE 673 (682)
T ss_pred hhcCccCCceehhhhccCCcchhhhhHHHHHHHHHHHhhcccc---hHHHHHHHHc--CCCHHHHHHHHHHHHhcCcEec
Confidence 433221 222445566677777776655543 5566666666 9999999999999999999988
Q ss_pred eCCee
Q 005024 707 HPHTF 711 (718)
Q Consensus 707 ~~~~~ 711 (718)
...|.
T Consensus 674 ~~~g~ 678 (682)
T COG1241 674 PNPGY 678 (682)
T ss_pred cCCCe
Confidence 87764
No 4
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=100.00 E-value=2e-110 Score=859.81 Aligned_cols=670 Identities=36% Similarity=0.550 Sum_probs=577.8
Q ss_pred CHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHcCCcEEEEehhhhhcccCCCHHHHHHHHHhHHHHHHHHHHHHHhhC
Q 005024 5 DLDADKAFAKEFISNFADANGDAKYANILQDVANRKIRSIQIDLEDLFNYKDFDEEFFRRVTENTRRYIGIFASAIDELL 84 (718)
Q Consensus 5 ~~~~~~~~~~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~f~~~d~~La~~i~~np~~~~~~~~~a~~~~~ 84 (718)
++...+..|++|++.|+... .++|+++|++.++....+|+|+++||..| |.+|+..+...|.+++++|++|+.++.
T Consensus 24 ~~~~v~~~fkefir~f~~~~-~f~Yrd~L~~N~~~~~y~L~v~le~L~~f---dedl~~~L~~~P~~~lp~fEeAa~~Va 99 (729)
T KOG0481|consen 24 RKSQVKTKFKEFIRQFRTGT-DFKYRDQLKRNYNLGEYSLEVELEDLISF---DEDLADKLSKQPADHLPLFEEAAKEVA 99 (729)
T ss_pred cHHHHHHHHHHHHHHhcccc-ccchHHHHHhcccccceEEEEEHHHhhcc---chHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 47788999999999998754 48999999999999999999999999999 999999999999999999999999887
Q ss_pred CCCCCCCCCchhhHHhhhccccCCCCCCCCCCCCCCCcccceEEEEEEeeCCCCccccccccCcCCCCcEEEEEeEEEEe
Q 005024 85 PEPTEAFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEIKRYYEVYIRASSKGRPFSIREVKASYIGQLVRISGIITRC 164 (718)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~G~V~~~ 164 (718)
.+.+...+. .+....++||.+. ++.+++++|+|+++++.|||.|.|+|+.+
T Consensus 100 d~i~~~~~~---------------------------~E~~~~d~Qv~L~--sda~p~~iR~l~s~~vsklVki~GIiiaA 150 (729)
T KOG0481|consen 100 DEITRPRPS---------------------------GEEVLHDIQVLLT--SDANPISIRQLKSDHVSKLVKISGIIIAA 150 (729)
T ss_pred hhhcCCCcC---------------------------CCccceeeEEEEe--cCCCcccHhHhhhHhhhhheeeccEEEEe
Confidence 654321110 0123446777665 66788999999999999999999999999
Q ss_pred ecceeeeeeeeeecCCCCceEEEe-ecc--eeecCCCCCC-----CccccCCCCCCceEeeeccceeccceeeeeeeccc
Q 005024 165 SDVKPLMQVAVYTCEECGFEIYQE-VTA--RVFMPLFECP-----SQRCKINKTKGNLVLQLRASKFLKFQEAKIQELAE 236 (718)
Q Consensus 165 s~v~p~~~~~~~~C~~C~~~~~~~-~~~--~~~~~~~~C~-----~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~ 236 (718)
|.|+.+.+.....|.+|.+..... ... ..+.-|..|. .+.|+-. +|.+.+++|+|+|+|.+++||.|+
T Consensus 151 S~v~~kat~l~l~CrnC~~t~~~~~~~pgl~g~~lPR~C~~~~~~k~~Cp~D----Pyii~pdks~~vD~QtLKLQE~pe 226 (729)
T KOG0481|consen 151 SAVSAKATRLSLVCRNCRHTRPNVIMRPGLEGYALPRKCDTPQAGKPKCPLD----PYIIMPDKSKCVDQQTLKLQELPE 226 (729)
T ss_pred eeeeecceEEEEEeccccccccceecCCCccccccccccCCcccCCCCCCCC----CEEEcccccceeehhheehhhCcc
Confidence 999999999999999999876322 221 2355667887 3467643 799999999999999999999999
Q ss_pred cCCCCCCCceEEEEeccccccccCCCCEEEEEEEEeeccCCCcccc-cc-ccccceeeeeEEEEeecccc---ccccCCh
Q 005024 237 HVPKGHIPRTMTVHLRGELTRKVAPGDVVEFSGIFLPIPYTGFRAL-RA-GLVADTYLEAMSVTHFKKKY---EEYELRG 311 (718)
Q Consensus 237 ~~~~g~~P~~i~v~l~~dlv~~~~pGd~V~v~GI~~~~~~~~~~~~-~~-~~~~~~~l~~~~i~~~~~~~---~~~~~~~ 311 (718)
.+|.|++||++.+.+++.|++++.||.+|+|+|||........+.. +. -.+...|+++++|+...... ....+|+
T Consensus 227 ~VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~ss~~~~~~ft~ 306 (729)
T KOG0481|consen 227 DVPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGSSRSSATMFTP 306 (729)
T ss_pred cCCcCcCcchhhhhhhHHHhccccCCceEEEEEEEEeeeccccCCCCccceeeecceEEEEEEEeccCCccccCcccCCh
Confidence 9999999999999999999999999999999999988643211111 11 12568899999998765432 2346899
Q ss_pred HHHHHHHHHhhChhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHH
Q 005024 312 DEEEHISRLAEDGDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
++++.|++++..+++|+.|.+||+|+|||++++|+||.++|+||+.+..++|++.||||||||.|+|||+||+|++++-+
T Consensus 307 eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEk 386 (729)
T KOG0481|consen 307 EEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEK 386 (729)
T ss_pred hHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEE
Q 005024 392 VAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITT 471 (718)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~ 471 (718)
.+|.++|++|++++++|||+++.+|+.+.+|.++.|++++|||||+||||||+|.++++.++||+||||+++|+|+|+++
T Consensus 387 vsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT 466 (729)
T KOG0481|consen 387 VSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITT 466 (729)
T ss_pred cCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCC-----CCCCC
Q 005024 472 SLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKES-----PALGF 546 (718)
Q Consensus 472 ~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~-----~~~~~ 546 (718)
.||+||+|+||+||.+||||..++..+||++.+.+|||||++|++.|..++..|..||+|++++|..... ..+..
T Consensus 467 ~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~ 546 (729)
T KOG0481|consen 467 TLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENE 546 (729)
T ss_pred eecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999986321 12234
Q ss_pred CCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhh-----cCCCCcccCHHHHHHHHHHHHHHHHhcCCCC
Q 005024 547 TPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAK-----SNTPHSYTTVRTLLSILRISAALARLRFSET 620 (718)
Q Consensus 547 ~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~-----~~~~~~~~s~R~l~~lirla~a~A~l~~~~~ 620 (718)
..++.+.+++|+.|+|. +.|.++++|.+.|..+|+.+|+.-.. ....+.|+|+||||.++|+++++|+++++..
T Consensus 547 ~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ 626 (729)
T KOG0481|consen 547 GEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPF 626 (729)
T ss_pred CcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCcc
Confidence 45889999999999996 89999999999999999999986322 2456789999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhhccccccccc--------ccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHH
Q 005024 621 VAQSDVDEALRLMQMSKFSLYSDDR--------QRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLK 692 (718)
Q Consensus 621 V~~~dv~~ai~l~~~~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 692 (718)
+|+.||.+|++++..|.......+. +......+..+..-|+..+.-. ..+++..+.+.....|++...+.
T Consensus 627 ate~hV~EA~RLF~vSTmdAa~~g~l~g~egf~s~e~~e~i~rie~qlkrr~~IG--~~~se~~li~df~~~~y~e~~v~ 704 (729)
T KOG0481|consen 627 ATEAHVEEALRLFQVSTMDAASQGTLAGVEGFTSPEDQEEIKRIEKQLKRRFAIG--SQVSEHSLIRDFVRQGYSEHAVK 704 (729)
T ss_pred ccHHHHHHHHHHHhHhhHHHHhcCchhcccccCCHHHHHHHHHHHHHHHHhcccc--cchhHHHHHHHHHhccccHHHHH
Confidence 9999999999999988654433321 1111223344444455444332 24888999988889999999999
Q ss_pred HHHHHHHhcCeEEEeCCeeEE
Q 005024 693 ECLEEYAALNVWQIHPHTFDI 713 (718)
Q Consensus 693 ~~l~~l~~~g~i~~~~~~~~i 713 (718)
+.|..|.+.|-++....++.|
T Consensus 705 kal~~m~~rg~iq~r~qrk~l 725 (729)
T KOG0481|consen 705 KALQIMLRRGEIQHRMQRKVL 725 (729)
T ss_pred HHHHHHHhhhHHHHHhcCceE
Confidence 999999999988776665543
No 5
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=2.4e-106 Score=909.95 Aligned_cols=671 Identities=26% Similarity=0.405 Sum_probs=563.0
Q ss_pred CHHHHHHHHHHHHHhcccCC---------------CcchHHHHHHHHHHcC----------CcEEEEehhhhhcccCCCH
Q 005024 5 DLDADKAFAKEFISNFADAN---------------GDAKYANILQDVANRK----------IRSIQIDLEDLFNYKDFDE 59 (718)
Q Consensus 5 ~~~~~~~~~~~Fl~~f~~~~---------------~~~~Y~~~i~~~~~~~----------~~~l~Id~~dL~~f~~~d~ 59 (718)
...+.+++|.+||++|.+-. ...+|..+|.+|+..+ .++|+||+.||..| |+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~f---d~ 160 (915)
T PTZ00111 84 RLEELSERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSF---DK 160 (915)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhh---hH
Confidence 35677899999999985521 3578999999999765 37999999999999 99
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhCCCCCC-CCCCchhhHHhhhccccCCCCCCCCCCCCCCCcccceEEEEEEeeCCCC
Q 005024 60 EFFRRVTENTRRYIGIFASAIDELLPEPTE-AFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEIKRYYEVYIRASSKG 138 (718)
Q Consensus 60 ~La~~i~~np~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~v~i~~~~~~ 138 (718)
.||..|.++|.+++++|++++.+++.+... .+. +.. .... ...++|++.+++.
T Consensus 161 ~L~~~l~~~P~e~i~~~e~~l~~~~~~~~~~~~~----~~~--------------------~~~~-~~~~~vr~~n~~~- 214 (915)
T PTZ00111 161 VLYKLLVTFPADCIAELDKVLVKLFNELLSKHYS----DLS--------------------LENN-SFFPRARLMNKPV- 214 (915)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHhhcccc----cch--------------------hccc-cceEEEEEeCCCC-
Confidence 999999999999999999999886432110 000 000 0000 1136888887754
Q ss_pred ccccccccCcCCCCcEEEEEeEEEEeecceeeeeeeeeecCC-----------CCceEEEeecceeecCCCCCCCccccC
Q 005024 139 RPFSIREVKASYIGQLVRISGIITRCSDVKPLMQVAVYTCEE-----------CGFEIYQEVTARVFMPLFECPSQRCKI 207 (718)
Q Consensus 139 ~~~~~r~l~~~~igklv~i~G~V~~~s~v~p~~~~~~~~C~~-----------C~~~~~~~~~~~~~~~~~~C~~~~C~~ 207 (718)
...+|+|+++++||||+|+|+|+|+|.|+|++..++|+|.. |++..+..+....+.+|..|+. |++
T Consensus 215 -~~~iR~L~s~~i~kLV~v~GiV~r~S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~~~~g~~~~P~~C~~--C~~ 291 (915)
T PTZ00111 215 -SDCVGNLEPSMADSLVQFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQPCTCEHYEYVIQGEVNEPLLCNE--CNS 291 (915)
T ss_pred -CCCcccCCHhhCCCeEEEEEEEEEccCcchhhEEEEEECCCCCcccCCccccCCccccccccCCcccCCCCCCC--CCC
Confidence 47999999999999999999999999999999999999986 7766555555567778889984 864
Q ss_pred CCCCCceEeeeccceeccceeeeeeeccccCCCCCCC--------------------ceEEEEeccccccccCCCCEEEE
Q 005024 208 NKTKGNLVLQLRASKFLKFQEAKIQELAEHVPKGHIP--------------------RTMTVHLRGELTRKVAPGDVVEF 267 (718)
Q Consensus 208 ~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~P--------------------~~i~v~l~~dlv~~~~pGd~V~v 267 (718)
.++|.+.++.|.|+|||+|+|||.|+.+|.|++| |+++|+|++||||.|+|||+|+|
T Consensus 292 ---~~~f~l~~~~s~f~D~Q~IklQE~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~V 368 (915)
T PTZ00111 292 ---KYTFELNHNMCVYSTKKIVKLLQSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTV 368 (915)
T ss_pred ---CCCeEEccCccEEEeeeEEEEeeCcccCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEE
Confidence 4579999999999999999999999999999999 99999999999999999999999
Q ss_pred EEEEeeccCCCccccc-cccccceeeeeEEEEeecccc------------ccccCChHHHHHHHHHhhChhHHHHHHhhc
Q 005024 268 SGIFLPIPYTGFRALR-AGLVADTYLEAMSVTHFKKKY------------EEYELRGDEEEHISRLAEDGDIYNKLARSL 334 (718)
Q Consensus 268 ~GI~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~si 334 (718)
||||+..+.......+ ...+|++|+.+++|+..+... ....+|+++.+.|.+++++|++|+.|++|+
T Consensus 369 tGIl~~~~~~~~~~~~~~~~~~~~yl~~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~Si 448 (915)
T PTZ00111 369 VGILKVTPIRTSTTRRTLKSLYTYFVNVIHVKVINSTNANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSF 448 (915)
T ss_pred EEEEEeccccccccccccccccceEEEEEEEEEeccccccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999987643111111 124689999999998754211 234689999999999999999999999999
Q ss_pred CCcccccHHHHHHHHHHHhCCcccc-----CCCC----ccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCC
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRK-----LKDG----MKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSS 405 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~-----~~~~----~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~ 405 (718)
+|.|+|++.+|+||+++|+||..+. .++| .++||++||||+|+||||||++|+++++.+||..|++|..++
T Consensus 449 aP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 449 APSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred CCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 9999999999999999999998653 3344 789999999999999999999999999999999999999999
Q ss_pred CCcceeeEe-ecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeC
Q 005024 406 GVGLTAAVQ-RDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAAN 484 (718)
Q Consensus 406 ~~~l~~~~~-~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~N 484 (718)
.+|+++... ++..+|+|.+++|++++|++|+||||||++|++..|.+|+++||+|++++.|+|+..+++++|+||||+|
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaN 608 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCN 608 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcC
Confidence 999999876 5556899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCC------------------------
Q 005024 485 PAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKE------------------------ 540 (718)
Q Consensus 485 p~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~------------------------ 540 (718)
|.+|+||+.+++.+|++|+++|||||||+|++.|.|+.+.|..||.||++.|....
T Consensus 609 P~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 688 (915)
T PTZ00111 609 PINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESL 688 (915)
T ss_pred CcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhcccccccccccc
Confidence 99999999999999999999999999999999999999999999999998763110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhh----------------------hcCCCCccc
Q 005024 541 SPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEA----------------------KSNTPHSYT 597 (718)
Q Consensus 541 ~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~----------------------~~~~~~~~~ 597 (718)
.+.....+++.++|++||.|||+ +.|.++++|.+.|.++|.+||+... .......++
T Consensus 689 ~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 768 (915)
T PTZ00111 689 RSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYV 768 (915)
T ss_pred ccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccc
Confidence 00112345889999999999996 7999999999999999999998421 112235789
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccc-------------cccCccchHHHHHHHHHHHH
Q 005024 598 TVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDD-------------RQRSGLDAISDIYSILRDEA 664 (718)
Q Consensus 598 s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~-------------~~~~~~~~~~~i~~~i~~~~ 664 (718)
|+|+||+|||+|+|+||+++++.|+++||.+|++++..+......++ .+...++.+..+.++|+.++
T Consensus 769 T~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~~r~~~~~~~~~i~~~~ 848 (915)
T PTZ00111 769 SSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQLNQMYEQVLSVL 848 (915)
T ss_pred cHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765433221 11123345556677777665
Q ss_pred HhcC----CCcccHHHHHHHH---------HHcCCCHHHHHHHHHHHHhcCeEEEeCCe
Q 005024 665 ARSN----KLDVSYAHALNWI---------SRKGYSEAQLKECLEEYAALNVWQIHPHT 710 (718)
Q Consensus 665 ~~~~----~~~~~~~~l~~~~---------~~~g~~~~~~~~~l~~l~~~g~i~~~~~~ 710 (718)
.... ...++++++.+.+ .+.|+++..+++.|++|.+.|.|.....|
T Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~g~i~~~~~g 907 (915)
T PTZ00111 849 TRSSNQDSNKSLDLNEVLSLCHKTFKDNRDHKDGEIYKLISEVLNKMVQEGTAVRENNS 907 (915)
T ss_pred HhhhccccCCceeHHHHHHHHHhhccccchhccCCCHHHHHHHHHHHHhCCeEeeeCCC
Confidence 4322 2358999999887 45699999999999999999999877765
No 6
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=100.00 E-value=5.1e-107 Score=863.61 Aligned_cols=653 Identities=36% Similarity=0.557 Sum_probs=563.0
Q ss_pred CccCHHHHHHHHHHHHHhcccCC-CcchHHHHHHHHHHcCCcEEEEehhhhhcccCCCHHHHHHHHHhHHHHHHHHHHHH
Q 005024 2 TIFDLDADKAFAKEFISNFADAN-GDAKYANILQDVANRKIRSIQIDLEDLFNYKDFDEEFFRRVTENTRRYIGIFASAI 80 (718)
Q Consensus 2 ~~~~~~~~~~~~~~Fl~~f~~~~-~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~f~~~d~~La~~i~~np~~~~~~~~~a~ 80 (718)
+..+|.+..+.|+.|+..|.--+ ..++|++.+.++..-+...+.+|..||..| +.+||..+...|++.+++|..++
T Consensus 126 t~v~iqe~~~~F~~fl~rf~~~d~~~~~yi~~l~e~~~~~~~~ln~~~~hl~~~---~~~Ly~ql~~ypqevip~~d~t~ 202 (804)
T KOG0478|consen 126 TNVNIQECPENFDDFLRRFRGIDPLCPYYIKSLLELKELEPEFLNLDAEHLTDF---DMDLYRQLVVYPQEVIPIFDETA 202 (804)
T ss_pred eEEEHHhhhhHHHHHHHhcCCCCccchHHHHHHHHHHHhhhhhhhhhhhccccc---cHHHHHhhhhchHhhcccchHHH
Confidence 45689999999999999994433 467899999999988899999999999888 99999999999999999999999
Q ss_pred HhhCCCCCCCCCCchhhHHhhhccccCCCCCCCCCCCCCCCcccceEEEEEEeeCCCCccccccccCcCCCCcEEEEEeE
Q 005024 81 DELLPEPTEAFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEIKRYYEVYIRASSKGRPFSIREVKASYIGQLVRISGI 160 (718)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~G~ 160 (718)
++++.+.+.. .+ +.+ ++++.|.+..+..++|+|++++|+|||+|+|.
T Consensus 203 ~~~~~e~~~~------~~-------------------------~~~--~i~vRPfn~~~~~smr~lNp~dIDkLisI~Gm 249 (804)
T KOG0478|consen 203 NEIVLERYVL------EI-------------------------LEK--SIKVRPFNAGKTFSMRNLNPNDIDKLISISGM 249 (804)
T ss_pred HHHHHhhccc------cc-------------------------hhc--eeEeeccCcccccccccCChhhhhheEEeeeE
Confidence 9987754421 00 122 35555556677889999999999999999999
Q ss_pred EEEeecceeeeeeeeeecCCCCceEEEeecceeecCCCCCCCccccCCCCCCceEeeeccceeccceeeeeeeccccCCC
Q 005024 161 ITRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLFECPSQRCKINKTKGNLVLQLRASKFLKFQEAKIQELAEHVPK 240 (718)
Q Consensus 161 V~~~s~v~p~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~ 240 (718)
|+|+|++.|.++++.|+|..|++++...+.......|..|. .|+.. ..|.+.++.|.|.|.|.||+||.|+.+|.
T Consensus 250 ViRss~vipem~~afFrC~vC~~~~~ve~drg~i~eP~~C~--~C~~~---~~~~Lihnrs~F~dkQviklqEspd~~p~ 324 (804)
T KOG0478|consen 250 VIRSSEVIPEMVEAFFRCSVCGHEIAVESDRGRIKEPMLCK--ECGTT---NSFQLLHNRSEFADKQVIKLQESPDDMPE 324 (804)
T ss_pred EEecCCCCHHHHhHhhhhhhcCceEEEEeecCccCCCcccc--cccCc---ccceeehhhhhhcccceeeeeeccccCcC
Confidence 99999999999999999999999999998877777888998 58654 35889999999999999999999999999
Q ss_pred CCCCceEEEEeccccccccCCCCEEEEEEEEeeccCCCccccc-cccccceeeeeEEEEeeccccc--------cccCCh
Q 005024 241 GHIPRTMTVHLRGELTRKVAPGDVVEFSGIFLPIPYTGFRALR-AGLVADTYLEAMSVTHFKKKYE--------EYELRG 311 (718)
Q Consensus 241 g~~P~~i~v~l~~dlv~~~~pGd~V~v~GI~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~~~~~~~--------~~~~~~ 311 (718)
|++|+++.|++++||||+++|||+|+|||||+..+..-....+ ...+|.+|++++|+.+.+.... +..++.
T Consensus 325 g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d~~~~~~~ 404 (804)
T KOG0478|consen 325 GSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERDVDEVRRI 404 (804)
T ss_pred CCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhhhccccccccccccccH
Confidence 9999999999999999999999999999999987654322222 1246899999999987655321 112455
Q ss_pred HHHHHHHHHhhChhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHH
Q 005024 312 DEEEHISRLAEDGDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
++.+.|.++++.|++|+.|++||+|+|||++++|+||+++|+||+.+....+.++||+|||||+|+||||||++++++++
T Consensus 405 ~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~ 484 (804)
T KOG0478|consen 405 EDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHR 484 (804)
T ss_pred HHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHH
Confidence 66899999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred HCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEE
Q 005024 392 VAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITT 471 (718)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~ 471 (718)
++||++|++|++++++|||+.+.+++.+++|.++.|+++++++|+|||||||||+.+.++.|||+||||+++++|+|+.+
T Consensus 485 l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~ 564 (804)
T KOG0478|consen 485 LLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIA 564 (804)
T ss_pred hCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCH
Q 005024 472 SLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEP 551 (718)
Q Consensus 472 ~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 551 (718)
++|+|++|||++||..++||+++++.+||+||++|||||||+|++.|.+|+..|.+|+.|+..+|....+ ......++.
T Consensus 565 sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~-~~~~~~~d~ 643 (804)
T KOG0478|consen 565 SLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGE-KQGSEAIDM 643 (804)
T ss_pred eccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccc-cchhHHHhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999966442 122334788
Q ss_pred HHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 552 AILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 552 ~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
..++.|+.||++ ..|.+++++.+.+..+|..+|+.+... .....++|++++|+|+++|||++++++.|.+.||++|+
T Consensus 644 ~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~--~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~ 721 (804)
T KOG0478|consen 644 NLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGA--GQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAV 721 (804)
T ss_pred HHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccc--cccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 899999999998 789999999999999999999976322 13567899999999999999999999999999999999
Q ss_pred HHHhhhccccccccccc-------------CccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHH
Q 005024 631 RLMQMSKFSLYSDDRQR-------------SGLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEE 697 (718)
Q Consensus 631 ~l~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~ 697 (718)
++..........++... ...........++...+. +. .+.+++...+.+.+++
T Consensus 722 ~l~R~aL~~~a~d~~tg~vd~~~l~tg~s~~~~~~~~~~~~ai~~~l~-------------~~-~~~~~~~~~~~~al~~ 787 (804)
T KOG0478|consen 722 RLLREALKQSATDPATGKVDMDILATGNSVVSRKKVEILGGAILKMLK-------------DE-SQKGIEEEMFLEALEE 787 (804)
T ss_pred HHHHHHhcccCCCCCCCceeehhhhhcccccchHHHHHHHHHHHHHhH-------------HH-HHHHHHHHHHHHHHHH
Confidence 99987755443332211 011122222223332221 22 3456778889999999
Q ss_pred HHhcCeEEEeCCeeE
Q 005024 698 YAALNVWQIHPHTFD 712 (718)
Q Consensus 698 l~~~g~i~~~~~~~~ 712 (718)
|.+.|-+..++.+.+
T Consensus 788 l~~~~~~~~s~~~~r 802 (804)
T KOG0478|consen 788 LQKEGKIIVSGKTIR 802 (804)
T ss_pred HhhcCceeecccccc
Confidence 999999999888543
No 7
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=100.00 E-value=7.5e-104 Score=821.85 Aligned_cols=589 Identities=37% Similarity=0.579 Sum_probs=515.2
Q ss_pred HHHHHHHHHhcccCCCcchHHHHHHHHHHcCCcEEEEehhhhhcccCCCHHHHHHHHHhHHHHHHHHHHHHHhhCCCCCC
Q 005024 10 KAFAKEFISNFADANGDAKYANILQDVANRKIRSIQIDLEDLFNYKDFDEEFFRRVTENTRRYIGIFASAIDELLPEPTE 89 (718)
Q Consensus 10 ~~~~~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~f~~~d~~La~~i~~np~~~~~~~~~a~~~~~~~~~~ 89 (718)
+++++.|++++.+..+...|.+.|..|++.+.++|.||++||..| ++.+|..++.||..|.+.|++|+.++......
T Consensus 11 ~e~~r~f~efLd~~~D~~iy~e~i~~~~~~~~~RlIvNv~dlr~~---~~~~A~glL~~p~~~~~~f~~AL~~~~~~~d~ 87 (818)
T KOG0479|consen 11 RERVRDFIEFLDDEEDADIYQEAIKKLLNEGQHRLIVNVDDLREF---NRERASGLLENPAEEVPPFEDALTDAASRIDD 87 (818)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHhhhcCcceEEEEhHHHHHh---HHHHHHhHhhChHhhhhhHHHHHHHHHhcccc
Confidence 455555555443333456999999999999999999999999999 99999999999999999999999987653221
Q ss_pred CCCCchhhHHhhhccccCCCCCCCCCCCCCCCcccceEEEEEEeeCCCCccccccccCcCCCCcEEEEEeEEEEeeccee
Q 005024 90 AFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEIKRYYEVYIRASSKGRPFSIREVKASYIGQLVRISGIITRCSDVKP 169 (718)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~G~V~~~s~v~p 169 (718)
.+ . .....|+|-|......+.+++|.|.+.++|++|+++||||++|-|+|
T Consensus 88 ~~-----~-------------------------~~~~~~~vGfeGsFG~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRP 137 (818)
T KOG0479|consen 88 VY-----A-------------------------KVKELFFVGFEGSFGNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRP 137 (818)
T ss_pred hh-----h-------------------------hhccceEEEeeeeccccccChhhHHHHHhCceEEeeeeeeeeeeech
Confidence 10 0 01235889999988899999999999999999999999999999999
Q ss_pred eeeeeeeecCCCCceEEEeeccee--ecCCCCCCCccccCCCCCCceEeeeccceeccceeeeeeeccccCCCCCCCceE
Q 005024 170 LMQVAVYTCEECGFEIYQEVTARV--FMPLFECPSQRCKINKTKGNLVLQLRASKFLKFQEAKIQELAEHVPKGHIPRTM 247 (718)
Q Consensus 170 ~~~~~~~~C~~C~~~~~~~~~~~~--~~~~~~C~~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~P~~i 247 (718)
++.+.++.|+..+.+.+.....-+ ...|..-..|.=. ...+.+......|+|.|+|.|.|||+|+..|+|++||++
T Consensus 138 KvvkSVHYcpaT~~~~~r~Y~D~T~~~~~p~~svYPT~D--e~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSV 215 (818)
T KOG0479|consen 138 KVVKSVHYCPATNKFHERDYRDATMLTTLPTGSVYPTRD--EDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSV 215 (818)
T ss_pred hhhheeeeccccCcchhhhhcchheecccccCCcCCccC--CCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcce
Confidence 999999999999887755443211 1111111111111 122368899999999999999999999999999999999
Q ss_pred EEEeccccccccCCCCEEEEEEEEeeccCCCccccccccccceeeeeEEEEeeccccccccCChHHHHHHHHHhhChhHH
Q 005024 248 TVHLRGELTRKVAPGDVVEFSGIFLPIPYTGFRALRAGLVADTYLEAMSVTHFKKKYEEYELRGDEEEHISRLAEDGDIY 327 (718)
Q Consensus 248 ~v~l~~dlv~~~~pGd~V~v~GI~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (718)
+|+|.+||||+|||||+|.|.|+|+..+.+.. + ..+..|.+.+-||+|....+.. ...++.+++..|+++++..++|
T Consensus 216 DvilddDLVD~~KPGDRV~ivG~yr~Lp~k~~-g-~tsg~FRTvliaNni~~l~ke~-~~~~t~~Di~~i~klsk~kdiF 292 (818)
T KOG0479|consen 216 DVILDDDLVDRVKPGDRVNIVGIYRSLPGKSN-G-NTSGTFRTVLIANNIELLSKEA-APDFTDEDIRNIKKLSKKKDIF 292 (818)
T ss_pred eEEecccccccCCCCCeeEEEEEEeeccCccC-C-cccceeEEEEEeccHHhhcccc-cccCChhhHHHHHHHHhcCCHH
Confidence 99999999999999999999999998765321 1 1234589999999998877653 5578999999999999999999
Q ss_pred HHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCC
Q 005024 328 NKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGV 407 (718)
Q Consensus 328 ~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~ 407 (718)
+.|+.|++|+|+|++.+|+||++.|.||+.+...+|.++||||||||+|+|.|+||+|+|++.+.+|+++-++|.+++++
T Consensus 293 dlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGV 372 (818)
T KOG0479|consen 293 DLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGV 372 (818)
T ss_pred HHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCC
Q 005024 408 GLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAW 487 (718)
Q Consensus 408 ~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~ 487 (718)
|||++++-|..+|+..+++|++++|++||+||||||+|+.-++.++|++||||+++|+|+|+..+||+||+||||+||.+
T Consensus 373 GLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvy 452 (818)
T KOG0479|consen 373 GLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVY 452 (818)
T ss_pred cceeEEeeccccchhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCC-------------------------
Q 005024 488 GRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESP------------------------- 542 (718)
Q Consensus 488 g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~------------------------- 542 (718)
|+||.++++.+||.||..|||||||+|++.|..|.+.|..|++|++..|....+.
T Consensus 453 G~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~ 532 (818)
T KOG0479|consen 453 GQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKK 532 (818)
T ss_pred cccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999998432110
Q ss_pred -----------------CCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhc-CCCCcccCHHHHH
Q 005024 543 -----------------ALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKS-NTPHSYTTVRTLL 603 (718)
Q Consensus 543 -----------------~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~-~~~~~~~s~R~l~ 603 (718)
...-..++.+|+++||.||+. +.|.+++++.++|.+.|..+|..+... .....|+|+|.||
T Consensus 533 et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLE 612 (818)
T KOG0479|consen 533 ETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLE 612 (818)
T ss_pred cchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHH
Confidence 000123788999999999998 899999999999999999999986432 2456899999999
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 604 SILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 604 ~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
.|||+|.|||++++++.|+.+|++.|+.++...
T Consensus 613 TlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA 645 (818)
T KOG0479|consen 613 TLIRLATAHAKARLSKVVEKDDAEAAVNLLRFA 645 (818)
T ss_pred HHHHHHHHHHHhhhcceeehhhHHHHHHHHHHH
Confidence 999999999999999999999999999998753
No 8
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-101 Score=811.29 Aligned_cols=589 Identities=36% Similarity=0.556 Sum_probs=529.1
Q ss_pred HHHHHHHHHHHhcccCCCcchHHHHHHHHHHcCCcEEEEehhhhhcccCCCHHHHHHHHHhHHHHHHHHHHHHHhhCCCC
Q 005024 8 ADKAFAKEFISNFADANGDAKYANILQDVANRKIRSIQIDLEDLFNYKDFDEEFFRRVTENTRRYIGIFASAIDELLPEP 87 (718)
Q Consensus 8 ~~~~~~~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~f~~~d~~La~~i~~np~~~~~~~~~a~~~~~~~~ 87 (718)
+...+|++||.+|.++++...|.+.|++++..+..++.|++.||..- ...||-.+.+.|...+.++..++.+.+...
T Consensus 160 ~i~~~fk~fl~~y~d~~~~~~~~~ri~~~~~~n~esl~v~y~dla~~---~~~la~fl~~ap~e~l~I~dr~a~~~v~~~ 236 (854)
T KOG0477|consen 160 EIARRFKNFLREYVDENGHNVYIERIRRMCEENRESLEVNYTDLAES---EHVLAYFLPEAPEEMLEIFDRAALEVVLLH 236 (854)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHhhchHHHHHHHHHHHHh---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999998 788999999999999999999998875533
Q ss_pred CCCCCCchhhHHhhhccccCCCCCCCCCCCCCCCcccceEEEEEEeeCCCCccccccccCcCCCCcEEEEEeEEEEeecc
Q 005024 88 TEAFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEIKRYYEVYIRASSKGRPFSIREVKASYIGQLVRISGIITRCSDV 167 (718)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~G~V~~~s~v 167 (718)
+..+ .++ ...++|++.++|.. ..+|.||..|+|+||.+.|+||+.|.|
T Consensus 237 ~p~y--------------------------eri----~~~ihvris~lP~~--~~lr~lRq~Hln~Lvr~~GvVtr~tgV 284 (854)
T KOG0477|consen 237 YPNY--------------------------ERI----HNEIHVRISDLPVC--ESLRSLRQLHLNQLVRTSGVVTRRTGV 284 (854)
T ss_pred CCCh--------------------------hhc----ccceeeeeecCCcc--ccHHHHHHhccCceEEeeeEEEeccee
Confidence 3211 122 33578888887753 689999999999999999999999999
Q ss_pred eeeeeeeeeecCCCCceEEEeec-ceeecCCCCCCCccccCCCCCCceEeeeccceeccceeeeeeeccccCCCCCCCce
Q 005024 168 KPLMQVAVYTCEECGFEIYQEVT-ARVFMPLFECPSQRCKINKTKGNLVLQLRASKFLKFQEAKIQELAEHVPKGHIPRT 246 (718)
Q Consensus 168 ~p~~~~~~~~C~~C~~~~~~~~~-~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~P~~ 246 (718)
.|.+....|.|.+||......+. .+..-.|..||+ |.+ +|+|..+.+...|.+||+|+|||.|..+|.|.+||+
T Consensus 285 ~pql~~vky~C~KC~~vlgPF~qs~n~evkp~~C~~--cqS---kGpf~vn~e~TvyrnYQritiQEspg~v~~GrlPRs 359 (854)
T KOG0477|consen 285 FPQLSVVKYDCLKCGFVLGPFVQSSNSEVKPGSCPE--CQS---KGPFEVNVEETVYRNYQRITIQESPGTVPAGRLPRS 359 (854)
T ss_pred ehhhHHHhhhHHhhCCccCceeeccCceeCCCCCcc--ccC---CCCCccchhhhhhcccceeeeccCCCcCCCCccccc
Confidence 99999999999999976644333 233334468985 753 578999999999999999999999999999999999
Q ss_pred EEEEeccccccccCCCCEEEEEEEEeeccCCCcccccccc-ccceeeeeEEEEeeccccccccCChHHHHHHHHHhhChh
Q 005024 247 MTVHLRGELTRKVAPGDVVEFSGIFLPIPYTGFRALRAGL-VADTYLEAMSVTHFKKKYEEYELRGDEEEHISRLAEDGD 325 (718)
Q Consensus 247 i~v~l~~dlv~~~~pGd~V~v~GI~~~~~~~~~~~~~~~~-~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (718)
.+|+|..||||.|+|||.|.|||||....+-. -+.++++ +|.+.++|+||.+........+++.++.+.|+++++++.
T Consensus 360 k~vILl~DLvD~~kpGdEievTGIy~nn~d~s-LN~kngFpvfatvi~ANhV~~k~~~~~~~~ltded~k~i~~lskd~~ 438 (854)
T KOG0477|consen 360 KEVILLADLVDSCKPGDEIEVTGIYTNNFDGS-LNTKNGFPVFATVIEANHVVKKDGKFDVDELTDEDFKEIWELSKDPP 438 (854)
T ss_pred hhheehhhhhhhcCCCcceEEeeeeccccccc-ccccCCccccceeheehhhhhhccccchhHHhHHHHHHHHHHhcCcc
Confidence 99999999999999999999999998765432 2223343 689999999998776655667789999999999999999
Q ss_pred HHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCC
Q 005024 326 IYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSS 405 (718)
Q Consensus 326 ~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~ 405 (718)
+-+++.+||||+|||++++|.|++++|+||..+....|.++||+|||||+|+||||||+++|++++.++|+++++|.+++
T Consensus 439 i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGAS 518 (854)
T KOG0477|consen 439 IKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGAS 518 (854)
T ss_pred HHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCC
Q 005024 406 GVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANP 485 (718)
Q Consensus 406 ~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np 485 (718)
++|||+++.+++.+++|++++|++++||+|||+|||||+|++.++..+|++||||.|+|+|+|+.++|.++|++|||+||
T Consensus 519 avGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 519 AVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598 (854)
T ss_pred ccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCC------------CCCCCCCHHH
Q 005024 486 AWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPA------------LGFTPLEPAI 553 (718)
Q Consensus 486 ~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~------------~~~~~~~~~~ 553 (718)
..||||++.++.+|+++.+|++||||+.+++.|..|+..|+++|+.++..|....+.. ....+++.+.
T Consensus 599 igGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~l 678 (854)
T KOG0477|consen 599 IGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQEL 678 (854)
T ss_pred CCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHH
Confidence 9999999999999999999999999999999999999999999999999886543321 1245799999
Q ss_pred HHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 554 LRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 554 l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
|++|+.|++. +.|.+.+--.+.+...|..||+.. ....+.|+|+|.+++++|+++|+|++++++.|+.+|+..|++.
T Consensus 679 LrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES--~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v 756 (854)
T KOG0477|consen 679 LRKYIIYAREKVRPKLNQMDMDKISSVYADLRKES--MATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRV 756 (854)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHHHhhc--cccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHH
Confidence 9999999997 799999999999999999999974 3345689999999999999999999999999999999999999
Q ss_pred Hhhhccc
Q 005024 633 MQMSKFS 639 (718)
Q Consensus 633 ~~~~~~~ 639 (718)
+..|..+
T Consensus 757 ~ldSfi~ 763 (854)
T KOG0477|consen 757 MLDSFIS 763 (854)
T ss_pred HHHHHHH
Confidence 8877443
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=3.1e-90 Score=771.35 Aligned_cols=495 Identities=52% Similarity=0.826 Sum_probs=447.6
Q ss_pred cccccccCcCCCCcEEEEEeEEEEeecceeeeeeeeeecCCCCceEEEeecceeecCCCCCCCccccCCCCCCceEeeec
Q 005024 140 PFSIREVKASYIGQLVRISGIITRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLFECPSQRCKINKTKGNLVLQLR 219 (718)
Q Consensus 140 ~~~~r~l~~~~igklv~i~G~V~~~s~v~p~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~ 219 (718)
++++|+|++.++||||+|+|+|+|+|.|+|++.+++|+|.+|+++++..+.++.+.+|..|+++.|++. ++|.++++
T Consensus 2 ~~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~~~~~~~p~~C~~~~C~~~---~~f~l~~~ 78 (509)
T smart00350 2 PSSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQSP---TPFSLNHE 78 (509)
T ss_pred CCCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEecCCcccCCCcCCCCcCCCC---CceEeccC
Confidence 468999999999999999999999999999999999999999999988877778889999998779754 36889999
Q ss_pred cceeccceeeeeeeccccCCCCCCCceEEEEeccccccccCCCCEEEEEEEEeeccCC-CccccccccccceeeeeEEEE
Q 005024 220 ASKFLKFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVEFSGIFLPIPYT-GFRALRAGLVADTYLEAMSVT 298 (718)
Q Consensus 220 ~s~~~d~Q~i~iQe~~~~~~~g~~P~~i~v~l~~dlv~~~~pGd~V~v~GI~~~~~~~-~~~~~~~~~~~~~~l~~~~i~ 298 (718)
.|+|+|||+|+|||.|+++|.|++||+++|+|++||||+|+|||+|.|+|||++.+.. .....+....+.+|+++++|+
T Consensus 79 ~s~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~i~ 158 (509)
T smart00350 79 RSTFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANHVR 158 (509)
T ss_pred CCeEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeEEE
Confidence 9999999999999999999999999999999999999999999999999999987421 111111112478999999998
Q ss_pred eeccc--ccc-----ccCChHHHHHHHHHhhChhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccce
Q 005024 299 HFKKK--YEE-----YELRGDEEEHISRLAEDGDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH 371 (718)
Q Consensus 299 ~~~~~--~~~-----~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~ 371 (718)
..+.. +.. ..+++++.+.|.++++++++|+.|++|++|.|+|++.+|+|++++|+||+.+...+|.++||++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~ 238 (509)
T smart00350 159 KLDYKRSFEDCSFSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDIN 238 (509)
T ss_pred EccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccce
Confidence 76542 111 35889999999999999999999999999999999999999999999999888889999999999
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHH
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRT 451 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~ 451 (718)
|||+|+||||||++|+++++.+|+..|+.|.+++.+++++...+++.+|+|.+++|++.+|++|+||||||++|++..|.
T Consensus 239 vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~ 318 (509)
T smart00350 239 ILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRT 318 (509)
T ss_pred EEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHH
Confidence 99999999999999999999999999999988888899998889988999999999999999999999999999999999
Q ss_pred HHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhh
Q 005024 452 AIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARH 531 (718)
Q Consensus 452 ~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~ 531 (718)
+|+++||+|++++.|+|...+++++|+||||+||.+|+||+..++.+|++|++++||||||+|++.|+|+.+.|.+|++|
T Consensus 319 ~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 319 AIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred HHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCC-CCCCC-CCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcC-CCCcccCHHHHHHHHH
Q 005024 532 VVYVHQNKES-PALGF-TPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSN-TPHSYTTVRTLLSILR 607 (718)
Q Consensus 532 il~~~~~~~~-~~~~~-~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~-~~~~~~s~R~l~~lir 607 (718)
+++.|..... ..... ..++.+.|++|+.++++ +.|.+++++.++|.++|.++|....... ...+++|+|+|++|+|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliR 478 (509)
T smart00350 399 VVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIR 478 (509)
T ss_pred HHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHH
Confidence 9988754322 11122 46999999999999998 7899999999999999999998643211 2357899999999999
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHhhhc
Q 005024 608 ISAALARLRFSETVAQSDVDEALRLMQMSK 637 (718)
Q Consensus 608 la~a~A~l~~~~~V~~~dv~~ai~l~~~~~ 637 (718)
+|+|+|++++++.|+++||.+|++++..+.
T Consensus 479 la~A~A~l~~r~~V~~~Dv~~ai~l~~~s~ 508 (509)
T smart00350 479 LSEAHAKMRLSDVVEEADVEEAIRLLRESI 508 (509)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998764
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=4.8e-65 Score=538.20 Aligned_cols=324 Identities=52% Similarity=0.834 Sum_probs=269.7
Q ss_pred HHHHHHHHhhChhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHH
Q 005024 313 EEEHISRLAEDGDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 313 ~~~~i~~~~~~~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
|+++|.++++++++|+.|++|++|+|+|++.+|+||+++|+||..+..++|.+.||++||||+|+||||||+|+++++++
T Consensus 1 d~~~i~~l~~~~~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~ 80 (331)
T PF00493_consen 1 DEEKIKELSKKPNIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKL 80 (331)
T ss_dssp THHHHHCCCCTTTHHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT
T ss_pred CHHHHHHHhcCCcHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred CCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEE
Q 005024 393 APRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTS 472 (718)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~ 472 (718)
+|+++|++|.+++.+|||+++.+++.+|+|.+++|++++|++|||||||||+|+++++.+||++||+|++++.|+|+..+
T Consensus 81 ~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 81 APRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp -SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred CCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCC---CCCC--CC
Q 005024 473 LNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKES---PALG--FT 547 (718)
Q Consensus 473 l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~---~~~~--~~ 547 (718)
+|++|+|+||+||.+|+|++..++.+|++++++|+|||||+|++.|.++.+.|..+++|+++.|..... .... ..
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999876541 1111 24
Q ss_pred CCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 005024 548 PLEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDV 626 (718)
Q Consensus 548 ~~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv 626 (718)
+++.++|++|+.|+| .+.|.+++++.+.|.+||..+|+..... ....++|+|+|++|+|+|+|+||++++++|+++||
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~-~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv 319 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSN-NKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDV 319 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCH-SS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhccccccc-ccccccchhhHHHHHHHHHHHHHHhccCceeHHHH
Confidence 799999999999999 6899999999999999999999976322 45689999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 005024 627 DEALRLMQMSK 637 (718)
Q Consensus 627 ~~ai~l~~~~~ 637 (718)
.+|+++++.+.
T Consensus 320 ~~Ai~L~~~Sl 330 (331)
T PF00493_consen 320 EEAIRLFEESL 330 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999998763
No 11
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-28 Score=260.50 Aligned_cols=296 Identities=17% Similarity=0.170 Sum_probs=215.8
Q ss_pred cCCcccccHHH-HHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---e--eecCCCCCCC
Q 005024 334 LAPEIYGHEDI-KKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---V--YTTGRGSSGV 407 (718)
Q Consensus 334 i~p~i~g~~~~-k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~--~~~~~~~~~~ 407 (718)
-+++|+|.... ..++..+-... +.|++|||.|++||||..+|++||+.++|. + ..|+..+.
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe-- 309 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE-- 309 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH--
Confidence 34578887664 33333332211 345589999999999999999999999886 2 23665544
Q ss_pred cceeeEe----ecccccceee-ecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEE
Q 005024 408 GLTAAVQ----RDNVTNEMVL-EGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSA 482 (718)
Q Consensus 408 ~l~~~~~----~~~~~g~~~~-~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa 482 (718)
.|..+.. +..+||+..- ++|.+.+|++|++|||||+.||...|++|+++++++.+... |.....+.+++||||
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rv--G~t~~~~vDVRIIAA 387 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERV--GGTKPIPVDVRIIAA 387 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEec--CCCCceeeEEEEEec
Confidence 2333333 3345665443 88999999999999999999999999999999999998777 999999999999999
Q ss_pred eCCC------CCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCC-CCCCCCCCCHHHHH
Q 005024 483 ANPA------WGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKES-PALGFTPLEPAILR 555 (718)
Q Consensus 483 ~Np~------~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~-~~~~~~~~~~~~l~ 555 (718)
||.. .|+| |-||+|.+ +++.++.++.+ ..++++++...+|.
T Consensus 388 TN~nL~~~i~~G~F------------------ReDLYYRL--------------NV~~i~iPPLReR~eDI~~L~~~Fl~ 435 (560)
T COG3829 388 TNRNLEKMIAEGTF------------------REDLYYRL--------------NVIPITIPPLRERKEDIPLLAEYFLD 435 (560)
T ss_pred cCcCHHHHHhcCcc------------------hhhheeee--------------ceeeecCCCcccCcchHHHHHHHHHH
Confidence 9988 6888 89999987 56666666544 45678888888998
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH-HHHHHHh
Q 005024 556 AYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD-EALRLMQ 634 (718)
Q Consensus 556 ~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~-~ai~l~~ 634 (718)
+|-....+..+.+++++...|..| .||||+|+|+++|+.+.-.+ .....|+..|+. .++..-.
T Consensus 436 k~s~~~~~~v~~ls~~a~~~L~~y--------------~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l~~k~ 499 (560)
T COG3829 436 KFSRRYGRNVKGLSPDALALLLRY--------------DWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFALEEKE 499 (560)
T ss_pred HHHHHcCCCcccCCHHHHHHHHhC--------------CCCchHHHHHHHHHHHHhcc--CCcceeehhhcchhhhcccc
Confidence 887666555667999999999987 79999999999999876543 344558888876 4443220
Q ss_pred hhcccccccccccCcc-chHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005024 635 MSKFSLYSDDRQRSGL-DAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEYA 699 (718)
Q Consensus 635 ~~~~~~~~~~~~~~~~-~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~ 699 (718)
............... .........|++.+.+++++ ..++|+.+|++++++++++++|.
T Consensus 500 -~~~~~~~~~~~~~l~~~~e~~Ek~~I~~aL~~~~gn------~~~aAk~LgIsrttL~rKlkk~~ 558 (560)
T COG3829 500 -PRPETTKQIEVGSLKEALEEYEKHLIREALERHGGN------KSKAAKELGISRTTLYRKLKKYG 558 (560)
T ss_pred -cCcCcccCcccccHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHhCCCHHHHHHHHHHhc
Confidence 001000000011111 12233445688888887754 67889999999999999999884
No 12
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.94 E-value=7.4e-26 Score=237.01 Aligned_cols=264 Identities=23% Similarity=0.318 Sum_probs=193.4
Q ss_pred CcccccHHHHHHHHHHHh--CCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCC-----------
Q 005024 336 PEIYGHEDIKKALLLLLV--GAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGR----------- 402 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~--~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~----------- 402 (718)
..|+|++.+|++++++++ |+. |+||.|+||||||+++++++.++|......+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~--------------~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~ 73 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIG--------------GVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCP 73 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCC--------------cEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCc
Confidence 478999999999997774 422 89999999999999999999999752111111
Q ss_pred ----------------------CCCCCcceeeEeecc--cccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhc
Q 005024 403 ----------------------GSSGVGLTAAVQRDN--VTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVME 458 (718)
Q Consensus 403 ----------------------~~~~~~l~~~~~~~~--~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me 458 (718)
+.+...++++...+. .+|.+.+++|.+..|++|++||||++.++++.|+.|+++|+
T Consensus 74 ~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~me 153 (334)
T PRK13407 74 EWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQ 153 (334)
T ss_pred ccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHH
Confidence 000011222221111 15788899999999999999999999999999999999999
Q ss_pred ccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccC
Q 005024 459 QQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQN 538 (718)
Q Consensus 459 ~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~ 538 (718)
++.+++.+.|....+++++.++||+||..+ .++++|++||.+.+.+....+.++..++..........
T Consensus 154 e~~v~v~r~G~~~~~p~rfiviAt~NP~e~------------~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~ 221 (334)
T PRK13407 154 SGENVVEREGLSIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDAD 221 (334)
T ss_pred cCCeEEEECCeEEecCCCEEEEecCCcccC------------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhccccc
Confidence 999888888999999999999999999865 68999999998887764333335566665553221100
Q ss_pred CCCCCCCCCCC--CHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHH
Q 005024 539 KESPALGFTPL--EPAILRAYISAARRL--SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALAR 614 (718)
Q Consensus 539 ~~~~~~~~~~~--~~~~l~~~i~~~~~~--~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~ 614 (718)
+......+ .......-+..+++. ...+++++.+++.+.....|. .++|....+++.|.++|.
T Consensus 222 ---~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~-----------~s~Ra~i~l~~aA~a~A~ 287 (334)
T PRK13407 222 ---HDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGS-----------DGLRGELTLLRAARALAA 287 (334)
T ss_pred ---chhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCC-----------CCchHHHHHHHHHHHHHH
Confidence 00000001 111222333334442 236899999999998877654 257998999999999999
Q ss_pred hcCCCCccHHHHHHHHHHHhhhccc
Q 005024 615 LRFSETVAQSDVDEALRLMQMSKFS 639 (718)
Q Consensus 615 l~~~~~V~~~dv~~ai~l~~~~~~~ 639 (718)
+++++.|+++||..+...+..++..
T Consensus 288 l~Gr~~V~~~Di~~~~~~vl~hR~~ 312 (334)
T PRK13407 288 FEGAEAVGRSHLRSVATMALSHRLR 312 (334)
T ss_pred HcCCCeeCHHHHHHHHHHhhhhhcc
Confidence 9999999999999999888777664
No 13
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.94 E-value=4e-26 Score=239.12 Aligned_cols=290 Identities=17% Similarity=0.177 Sum_probs=204.6
Q ss_pred cccccHHHHHHHH--HHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc-----eeecCCCCCC---
Q 005024 337 EIYGHEDIKKALL--LLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG-----VYTTGRGSSG--- 406 (718)
Q Consensus 337 ~i~g~~~~k~~i~--~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~-----~~~~~~~~~~--- 406 (718)
.|+|+..+-..++ ..++.. +|.+|||.|++||||..+|++||+.++|. ...|...+..
T Consensus 224 ~iIG~S~am~~ll~~i~~VA~------------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlE 291 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVAK------------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLE 291 (550)
T ss_pred cceecCHHHHHHHHHHHHHhc------------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHH
Confidence 7888888766655 333433 34499999999999999999999999886 2235544321
Q ss_pred CcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 407 VGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 407 ~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
.+|++. .+..+||+..-+.|.+.+||||++|||||..||.+.|.+|++++++|.+... |...+++.+++||||||.+
T Consensus 292 SELFGH-eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRv--G~~r~ikVDVRiIAATNRD 368 (550)
T COG3604 292 SELFGH-EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERV--GGDRTIKVDVRVIAATNRD 368 (550)
T ss_pred HHHhcc-cccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeec--CCCceeEEEEEEEeccchh
Confidence 233333 4667889889999999999999999999999999999999999999998877 9999999999999999998
Q ss_pred ------CCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCC-CCCCCCCCCHHHHHHHHH
Q 005024 487 ------WGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKES-PALGFTPLEPAILRAYIS 559 (718)
Q Consensus 487 ------~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~-~~~~~~~~~~~~l~~~i~ 559 (718)
.|+| |-||++.+ .++.++.++.. ...+++.+...+++++-.
T Consensus 369 L~~~V~~G~F------------------RaDLYyRL--------------sV~Pl~lPPLRER~~DIplLA~~Fle~~~~ 416 (550)
T COG3604 369 LEEMVRDGEF------------------RADLYYRL--------------SVFPLELPPLRERPEDIPLLAGYFLEKFRR 416 (550)
T ss_pred HHHHHHcCcc------------------hhhhhhcc--------------cccccCCCCcccCCccHHHHHHHHHHHHHH
Confidence 6888 88888776 33344444333 344555566666666555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh----
Q 005024 560 AARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM---- 635 (718)
Q Consensus 560 ~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~---- 635 (718)
....-.-.++++|.+.|.+| .||||+|+|+++++.|..+| +..++.+|+ ..+.....
T Consensus 417 ~~gr~~l~ls~~Al~~L~~y--------------~wPGNVRELen~veRavlla----~~~~~~~d~-~~l~~~~~~~~~ 477 (550)
T COG3604 417 RLGRAILSLSAEALELLSSY--------------EWPGNVRELENVVERAVLLA----GRLTRRGDL-CTLELSLSALLW 477 (550)
T ss_pred hcCCcccccCHHHHHHHHcC--------------CCCCcHHHHHHHHHHHHHHh----cccCCCcce-eehhhhhhcccc
Confidence 43333447999999999997 69999999999999998877 334555554 22221111
Q ss_pred ---hc-cccc--cccccc--Cccc-hHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005024 636 ---SK-FSLY--SDDRQR--SGLD-AISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 636 ---~~-~~~~--~~~~~~--~~~~-~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 698 (718)
.. .... ....+. .... ..+.-.+.|...+..++.+ ...+|+.+|++++++...+++|
T Consensus 478 ~~~~~~~p~~~~~~~~p~~~~l~~~~~~~eR~~I~~aL~~~~~~------~a~AAr~LGl~~~~L~~~~kRl 543 (550)
T COG3604 478 KTLPAPEPSALPEPALPGEHTLREATEEFERQLIIAALEETNGN------WAGAARRLGLTRRTLLYRMKRL 543 (550)
T ss_pred ccCCCCCccccCCccCCCcccchhhhHHHHHHHHHHHHHHhCCc------HHHHHHHhCCCHHHHHHHHHHc
Confidence 00 0000 001111 1111 1122334566666666644 4568999999999999988877
No 14
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.94 E-value=2.5e-25 Score=233.70 Aligned_cols=266 Identities=23% Similarity=0.314 Sum_probs=198.2
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce------eec---------
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV------YTT--------- 400 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~------~~~--------- 400 (718)
..|+||+.+|.+++++++.... | |+||.|+||+|||+++++++..+|... +.+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~-----g-------~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKI-----G-------GVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMC 71 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCC-----C-------eEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccC
Confidence 4789999999999999886321 1 899999999999999999999986421 000
Q ss_pred ---CC----------------------CCCCCcceeeEeecc--cccceeeecceEeeecCCeeeecccccCChHHHHHH
Q 005024 401 ---GR----------------------GSSGVGLTAAVQRDN--VTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAI 453 (718)
Q Consensus 401 ---~~----------------------~~~~~~l~~~~~~~~--~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L 453 (718)
.. +.+...+++....+. .+|.+.+++|.+..|++|++||||++.+++..|..|
T Consensus 72 ~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~L 151 (337)
T TIGR02030 72 EEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVL 151 (337)
T ss_pred hHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHH
Confidence 00 000001222221111 268889999999999999999999999999999999
Q ss_pred HHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCCh-hHHHHHHhhh
Q 005024 454 HEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADM-DSDLEMARHV 532 (718)
Q Consensus 454 ~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~-~~d~~i~~~i 532 (718)
+++|+++.+++.+.|....+++++.++||.||..| .++++|++||.+.+.+ ++++. +++.+|.+..
T Consensus 152 l~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg------------~l~~~LldRf~l~i~l-~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 152 LDVAASGWNVVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLHAEI-RTVRDVELRVEIVERR 218 (337)
T ss_pred HHHHHhCCeEEEECCEEEEcCCCEEEEeccccccC------------CCCHHHHhhcceEEEC-CCCCCHHHHHHHHHhh
Confidence 99999998888888999999999999999999866 6899999999887766 55544 5556665543
Q ss_pred hhhccCCCCCCCCCCCC--CHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHH
Q 005024 533 VYVHQNKESPALGFTPL--EPAILRAYISAARRL--SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRI 608 (718)
Q Consensus 533 l~~~~~~~~~~~~~~~~--~~~~l~~~i~~~~~~--~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirl 608 (718)
...... +......+ ....+.+.+..+++. ...+++++.+++.+.+..+|. -++|....++|.
T Consensus 219 ~~~~~~---~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~-----------~s~Ra~i~l~ra 284 (337)
T TIGR02030 219 TEYDAD---PHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDV-----------DGLRGELTLNRA 284 (337)
T ss_pred hhcccC---chhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCC-----------CCCcHHHHHHHH
Confidence 221100 00000011 122445566666653 235899999999998876652 157999999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHhhhcccc
Q 005024 609 SAALARLRFSETVAQSDVDEALRLMQMSKFSL 640 (718)
Q Consensus 609 a~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~ 640 (718)
|+|+|.+++++.|+++||..|..++..++...
T Consensus 285 ArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~~ 316 (337)
T TIGR02030 285 AKALAAFEGRTEVTVDDIRRVAVLALRHRLRK 316 (337)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999887743
No 15
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.94 E-value=2.2e-25 Score=233.56 Aligned_cols=264 Identities=22% Similarity=0.282 Sum_probs=196.2
Q ss_pred cccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCC----CC--------
Q 005024 337 EIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGR----GS-------- 404 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~----~~-------- 404 (718)
.|+||+++|+||+++++.... | ++||.|++|||||++++.++..++......+. .+
T Consensus 18 ~ivGq~~~k~al~~~~~~p~~-----~-------~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~ 85 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDPKI-----G-------GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD 85 (350)
T ss_pred HHhChHHHHHHHHHhccCCCC-----C-------eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch
Confidence 799999999999999987531 1 79999999999999999999998653211100 00
Q ss_pred -------------------CCCcceeeEeec-----------ccccceeeecceEeeecCCeeeecccccCChHHHHHHH
Q 005024 405 -------------------SGVGLTAAVQRD-----------NVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIH 454 (718)
Q Consensus 405 -------------------~~~~l~~~~~~~-----------~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~ 454 (718)
....+......+ ..+|.+.+++|.+..|++|++||||++.+++..|+.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 000000111111 11355677899999999999999999999999999999
Q ss_pred HhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhh
Q 005024 455 EVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVY 534 (718)
Q Consensus 455 ~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~ 534 (718)
++|+++.+++.+.|....++.++.++||.||..| .++++|++||.+.+.+....+.+.+.+|.+....
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~eg------------~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC------------CCCHHHHHHhCceeecCCCCChHHHHHHHHhhhc
Confidence 9999999999888999999999999999999876 6899999999888877444445777777766432
Q ss_pred hccCCCC---CCCCCCCCCHHHHHHHHHHHHh-c-CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHH
Q 005024 535 VHQNKES---PALGFTPLEPAILRAYISAARR-L-SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRIS 609 (718)
Q Consensus 535 ~~~~~~~---~~~~~~~~~~~~l~~~i~~~~~-~-~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla 609 (718)
....... ..........+ -+..+++ . ...+++++.+++.+....+|. .++|....+++.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~----~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~-----------~s~Ra~i~l~raA 298 (350)
T CHL00081 234 FDKNPQEFREKYEESQEELRS----KIVAAQNLLPKVEIDYDLRVKISQICSELDV-----------DGLRGDIVTNRAA 298 (350)
T ss_pred cccChhhhhhhhccccccCHH----HHHHHHHhcCCCccCHHHHHHHHHHHHHHCC-----------CCChHHHHHHHHH
Confidence 1100000 00011122233 3333444 2 236899999999999877654 2589999999999
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHhhhccc
Q 005024 610 AALARLRFSETVAQSDVDEALRLMQMSKFS 639 (718)
Q Consensus 610 ~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~ 639 (718)
+|+|.+++++.|+++||..+..++..++..
T Consensus 299 rA~Aal~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 299 KALAAFEGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999988774
No 16
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.94 E-value=3.1e-26 Score=244.99 Aligned_cols=295 Identities=17% Similarity=0.190 Sum_probs=216.9
Q ss_pred hcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---e--eecCCCCCCC
Q 005024 333 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---V--YTTGRGSSGV 407 (718)
Q Consensus 333 si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~--~~~~~~~~~~ 407 (718)
.....++|+...-..+...+..- -.++++|||.|++||||..+|++||+.++|. + ..|+..+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-- 205 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-- 205 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH--
Confidence 35668888877655554333211 1234499999999999999999999999874 2 22555443
Q ss_pred cceeeE----eecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEe
Q 005024 408 GLTAAV----QRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAA 483 (718)
Q Consensus 408 ~l~~~~----~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~ 483 (718)
.+..+. .+..+||.-.-+.|.+..|+||++|||||..||.+.|..|+++++++++... |...+.+.+++|||||
T Consensus 206 ~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rv--G~~~~i~vdvRiIaaT 283 (464)
T COG2204 206 NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERV--GGNKPIKVDVRIIAAT 283 (464)
T ss_pred HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEec--CCCcccceeeEEEeec
Confidence 232222 3445678778889999999999999999999999999999999999999887 9999999999999999
Q ss_pred CCC------CCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCC-CCCCCCCCCHHHHHH
Q 005024 484 NPA------WGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKES-PALGFTPLEPAILRA 556 (718)
Q Consensus 484 Np~------~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~-~~~~~~~~~~~~l~~ 556 (718)
|.+ .|+| |-||+|.+ +++.++.++.. ..++++.+..+++++
T Consensus 284 ~~dL~~~v~~G~F------------------ReDLyyRL--------------nV~~i~iPpLRER~EDIp~L~~hfl~~ 331 (464)
T COG2204 284 NRDLEEEVAAGRF------------------REDLYYRL--------------NVVPLRLPPLRERKEDIPLLAEHFLKR 331 (464)
T ss_pred CcCHHHHHHcCCc------------------HHHHHhhh--------------ccceecCCcccccchhHHHHHHHHHHH
Confidence 988 6877 77777665 45555555443 457888889999998
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 557 YISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 557 ~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
+........+.+++++.+.|..| .||||+|+|+++++.+...+ ..+.++.+|+..-+.. +
T Consensus 332 ~~~~~~~~~~~~s~~a~~~L~~y--------------~WPGNVREL~N~ver~~il~---~~~~i~~~~l~~~~~~---~ 391 (464)
T COG2204 332 FAAELGRPPKGFSPEALAALLAY--------------DWPGNVRELENVVERAVILS---EGPEIEVEDLPLEILA---P 391 (464)
T ss_pred HHHHcCCCCCCCCHHHHHHHHhC--------------CCChHHHHHHHHHHHHHhcC---Cccccchhhccccccc---c
Confidence 87766555678999999999987 79999999999999887776 6677888887643300 1
Q ss_pred ccccccccccc------Ccc-chHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005024 637 KFSLYSDDRQR------SGL-DAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEYA 699 (718)
Q Consensus 637 ~~~~~~~~~~~------~~~-~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~ 699 (718)
........... ... .......++|...+..++++ +.+.|+.+|+++++++++|++|.
T Consensus 392 ~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I~~aL~~~~g~------~~~aA~~LGi~R~tLy~Klk~~g 455 (464)
T COG2204 392 AAEALAGPAGEAALPGLPLGEALAEVERQLILQALERTGGN------KSEAAERLGISRKTLYRKLKEYG 455 (464)
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHCCCHHHHHHHHHHhC
Confidence 00000000000 001 12233345677777777754 78889999999999999999883
No 17
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.94 E-value=2.2e-25 Score=255.32 Aligned_cols=267 Identities=26% Similarity=0.327 Sum_probs=202.6
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee----------------
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT---------------- 399 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~---------------- 399 (718)
..|+||+.+|.+++++++.+.. | +|||.|+||||||++|++++..+|.....
T Consensus 4 ~~ivGq~~~~~al~~~av~~~~-----g-------~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~ 71 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDPRI-----G-------GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWC 71 (633)
T ss_pred chhcChHHHHHHHHHHhhCCCC-----C-------eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccC
Confidence 5799999999999999986531 1 79999999999999999999999632111
Q ss_pred -------------------cCCCCCCCcceeeEe--ecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhc
Q 005024 400 -------------------TGRGSSGVGLTAAVQ--RDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVME 458 (718)
Q Consensus 400 -------------------~~~~~~~~~l~~~~~--~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me 458 (718)
...+.+...|.+... ....+|.+.+.+|.+..|++|+|||||+++|++..|..|+++|+
T Consensus 72 ~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le 151 (633)
T TIGR02442 72 EECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAA 151 (633)
T ss_pred hhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHh
Confidence 000111111222110 00124667788999999999999999999999999999999999
Q ss_pred ccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccC
Q 005024 459 QQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQN 538 (718)
Q Consensus 459 ~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~ 538 (718)
+|.+.+.+.|....+++++.+|||+||..| .++++|++||++.+.+.+..+.+.+.++..+.+.....
T Consensus 152 ~g~~~v~r~g~~~~~~~~~~lIat~np~eg------------~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~ 219 (633)
T TIGR02442 152 MGVNRVEREGLSVSHPARFVLIGTMNPEEG------------DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDAD 219 (633)
T ss_pred cCCEEEEECCceeeecCCeEEEEecCCCCC------------CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999865 68999999999888776655566667777665542211
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhc
Q 005024 539 KESPALGFTPLEPAILRAYISAARRLSP--CVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLR 616 (718)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~~i~~~~~~~p--~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~ 616 (718)
.......+ .-....+.+.+..++...+ .+++++.++|.+++..++. .+.|....++|.|+++|.++
T Consensus 220 ~~~~~~~~-~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i-----------~s~Ra~i~~~r~Ara~AaL~ 287 (633)
T TIGR02442 220 PEAFAARW-AAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGV-----------DGHRADIVMARAARALAALD 287 (633)
T ss_pred cHHHHHHh-hhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC-----------CCccHHHHHHHHHHHHHHHc
Confidence 10000000 0123466777888877544 5899999999999876532 25799999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhhhcc
Q 005024 617 FSETVAQSDVDEALRLMQMSKF 638 (718)
Q Consensus 617 ~~~~V~~~dv~~ai~l~~~~~~ 638 (718)
+++.|+.+||.+|+.++..++.
T Consensus 288 gr~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 288 GRRRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred CCCcCCHHHHHHHHHHHhhhhc
Confidence 9999999999999999987754
No 18
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.93 E-value=3.7e-25 Score=243.90 Aligned_cols=253 Identities=23% Similarity=0.282 Sum_probs=185.3
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce----eecCCCCCCCccee
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV----YTTGRGSSGVGLTA 411 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~~~~~~~~l~~ 411 (718)
.+++|++.+++++..++.+|. |++|+||||||||++++.++.++|... +......+..|...
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g~--------------~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~ 257 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGGH--------------NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLI 257 (499)
T ss_pred HHhcCcHHHHhhhhhhccCCC--------------EEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhc
Confidence 357899999999999998886 999999999999999999999886531 11111111112111
Q ss_pred -------eEeecc---------cccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 412 -------AVQRDN---------VTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 412 -------~~~~~~---------~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
..++.+ ..|.+...+|.+.+|++|+|||||++++++..+..|+++||++.+++.+.|....+++
T Consensus 258 ~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa 337 (499)
T TIGR00368 258 DRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPA 337 (499)
T ss_pred cccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccC
Confidence 011111 1345567899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCC-CCCCCC-----CCCcchh----cCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCC
Q 005024 476 RTAVLSAANPA-WGRYDL-----RRTPAEN----INLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALG 545 (718)
Q Consensus 476 ~~~viaa~Np~-~g~~~~-----~~~~~~~----~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~ 545 (718)
++++|||+||. .|.|+. .++..+. ..++.+|+||||+.+.+.+....+ +.+ .
T Consensus 338 ~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~----l~~--------------~ 399 (499)
T TIGR00368 338 RFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK----LLS--------------T 399 (499)
T ss_pred CeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH----Hhc--------------c
Confidence 99999999998 677753 3343332 379999999999999886544321 100 0
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCC-------------------CCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 546 FTPLEPAILRAYISAARR-----LSP-------------------CVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 546 ~~~~~~~~l~~~i~~~~~-----~~p-------------------~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
....+...+++.+..||. +.. .+++++.+.+...|. ....|.|.
T Consensus 400 ~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~------------~~~lS~R~ 467 (499)
T TIGR00368 400 GSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALN------------KLGLSSRA 467 (499)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHH------------hcCCCchH
Confidence 011234445555544432 111 235555555555542 24589999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
...++|+|+++|.|++++.|+.+||.+|+.+
T Consensus 468 ~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 468 THRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 9999999999999999999999999999864
No 19
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.93 E-value=1.2e-24 Score=246.27 Aligned_cols=258 Identities=23% Similarity=0.265 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc--eeecCCCCCCCcceeeEe--ecc
Q 005024 342 EDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG--VYTTGRGSSGVGLTAAVQ--RDN 417 (718)
Q Consensus 342 ~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~--~~~~~~~~~~~~l~~~~~--~~~ 417 (718)
+.+|.|+++..+....- ||||.|+||||||+++++++..+|+. +.......+...|.+... ...
T Consensus 1 ~~~~~Al~l~av~p~~g------------~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~ 68 (589)
T TIGR02031 1 ERAKLALTLLAVDPSLG------------GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESL 68 (589)
T ss_pred ChHHHHHHHhccCCCcc------------eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhh
Confidence 35788988888876421 89999999999999999999999864 222222222223433321 112
Q ss_pred cccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcc
Q 005024 418 VTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPA 497 (718)
Q Consensus 418 ~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~ 497 (718)
.+|.+.+++|.+..|++|++||||++.+++..|..|+++|+++.+++.+.|....++++|.+|||+||....-
T Consensus 69 ~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g------- 141 (589)
T TIGR02031 69 AGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG------- 141 (589)
T ss_pred hcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC-------
Confidence 3577889999999999999999999999999999999999999999999999999999999999999985111
Q ss_pred hhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCC--CCCHHHHHH
Q 005024 498 ENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSP--CVPRELEEY 575 (718)
Q Consensus 498 ~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p--~ls~~~~~~ 575 (718)
.++++|++||++.+.+...++..+..+|+++.+.... .........+++.+..+++..+ .+++++.++
T Consensus 142 ---~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~-------~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~ 211 (589)
T TIGR02031 142 ---GLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEV-------FRMNDELELLRGQIEAARELLPQVTISAEQVKE 211 (589)
T ss_pred ---CCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhh-------hhcchhhHHHHHHHHHHHHhcCCccCCHHHHHH
Confidence 7999999999998888777877777888777652210 0111345677888888887544 589999999
Q ss_pred HHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccc
Q 005024 576 IAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFS 639 (718)
Q Consensus 576 l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~ 639 (718)
|.+++..+. ..+.|....++|.|+|+|.+++++.|+++||..|+.++..++..
T Consensus 212 l~~~~~~~g-----------v~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~ 264 (589)
T TIGR02031 212 LVLTAASLG-----------ISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRAT 264 (589)
T ss_pred HHHHHHHcC-----------CCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhcc
Confidence 999885532 23589999999999999999999999999999999999887653
No 20
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.93 E-value=5.6e-25 Score=240.91 Aligned_cols=255 Identities=21% Similarity=0.317 Sum_probs=181.8
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce----------ee-cCCCC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV----------YT-TGRGS 404 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~----------~~-~~~~~ 404 (718)
..++|+..+++++..++.+|+ |++|+|+||+|||++++.++.++|... +. .|...
T Consensus 191 ~~v~Gq~~~~~al~laa~~G~--------------~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~ 256 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAGGH--------------NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAES 256 (506)
T ss_pred EEEECcHHHHhhhheeccCCc--------------EEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcccc
Confidence 367899999999988888886 999999999999999999999987541 11 12111
Q ss_pred CCCcceeeEeeccc---------ccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 405 SGVGLTAAVQRDNV---------TNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 405 ~~~~l~~~~~~~~~---------~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
...++....++.+. .|.+...+|.+.+|++|+|||||++.+++..+..|+++||+|.+++.+.|...++|+
T Consensus 257 ~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa 336 (506)
T PRK09862 257 VQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPA 336 (506)
T ss_pred ccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccC
Confidence 11122112222222 356678999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCC-CCCCCC---CCCcchh----cCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCC
Q 005024 476 RTAVLSAANPA-WGRYDL---RRTPAEN----INLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFT 547 (718)
Q Consensus 476 ~~~viaa~Np~-~g~~~~---~~~~~~~----~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~ 547 (718)
+|.+|||+||. .|.|.. .++..+. -.++.+++||||+.+.+. +++.+ .+... .. .
T Consensus 337 ~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~-~~~~~---~l~~~----~~---------~ 399 (506)
T PRK09862 337 RFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIP-LPPPG---ILSKT----VV---------P 399 (506)
T ss_pred CEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeC-CCCHH---HHhcc----cC---------C
Confidence 99999999998 677742 3444333 379999999999988773 33322 11000 00 0
Q ss_pred CCCHHHHHHHHHHHHh--------cC-----------CCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHH
Q 005024 548 PLEPAILRAYISAARR--------LS-----------PCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRI 608 (718)
Q Consensus 548 ~~~~~~l~~~i~~~~~--------~~-----------p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirl 608 (718)
.-+...+++.+..++. .. -.+++++.+.+..++. ....|.|....++|+
T Consensus 400 ~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~------------~~~lS~Ra~~rlLrv 467 (506)
T PRK09862 400 GESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLI------------HLGLSIRAWQRLLKV 467 (506)
T ss_pred CCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHH------------HcCCCHHHHHHHHHH
Confidence 0111122222111111 00 1245555555555442 246789999999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 609 SAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 609 a~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
|+++|.+++++.|+++||.+|+.+-
T Consensus 468 ARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 468 ARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 9999999999999999999999864
No 21
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.9e-24 Score=227.28 Aligned_cols=267 Identities=24% Similarity=0.307 Sum_probs=184.1
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee-----------cCCCC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT-----------TGRGS 404 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~-----------~~~~~ 404 (718)
.+|.||+.+|+|+..+..||+ |+|++||||||||++|+.+..++|..... .|...
T Consensus 179 ~DV~GQ~~AKrAleiAAAGgH--------------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~ 244 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGGH--------------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLH 244 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcCC--------------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccc
Confidence 489999999999999999998 99999999999999999999999865211 11111
Q ss_pred CCC-cceeeEeeccc---------ccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEec
Q 005024 405 SGV-GLTAAVQRDNV---------TNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLN 474 (718)
Q Consensus 405 ~~~-~l~~~~~~~~~---------~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~ 474 (718)
... -.....++.+. .|....++|.+.+||+||+||||+.+......++|.+.||+|.+.+++++..+.+|
T Consensus 245 ~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~yp 324 (490)
T COG0606 245 EGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYP 324 (490)
T ss_pred ccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEe
Confidence 100 01111122221 34456789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeCCCC-CCCC---CC--CCcchh----cCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCC
Q 005024 475 ARTAVLSAANPAW-GRYD---LR--RTPAEN----INLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPAL 544 (718)
Q Consensus 475 ~~~~viaa~Np~~-g~~~---~~--~~~~~~----~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~ 544 (718)
++|.++||+||+. |.+. .. ++..+. -+++.+|+||+|+..-+ +..+....+. .
T Consensus 325 a~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev---~~~~~~e~~~--------------~ 387 (490)
T COG0606 325 ARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEV---PRLSAGELIR--------------Q 387 (490)
T ss_pred eeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecc---cCCCHHHhhc--------------C
Confidence 9999999999993 3332 22 332222 47999999999999743 3332222110 0
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCC-CCHHHHHHHHHHHHHhhHhhhh---cCCCCcccCHHHHHHHHHHHHHHHHh
Q 005024 545 GFTPLEPAILRAYISAARR-----LSPC-VPRELEEYIAAAYSNIRQEEAK---SNTPHSYTTVRTLLSILRISAALARL 615 (718)
Q Consensus 545 ~~~~~~~~~l~~~i~~~~~-----~~p~-ls~~~~~~l~~~y~~lr~~~~~---~~~~~~~~s~R~l~~lirla~a~A~l 615 (718)
...+-+...+++.+..||. .... ++.+......+-|..+...+.. .......++.|....++++|..+|.+
T Consensus 388 ~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL 467 (490)
T COG0606 388 VPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADL 467 (490)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcc
Confidence 0111234455555555443 1111 1222222222223333222110 01124678899999999999999999
Q ss_pred cCCCCccHHHHHHHHHHH
Q 005024 616 RFSETVAQSDVDEALRLM 633 (718)
Q Consensus 616 ~~~~~V~~~dv~~ai~l~ 633 (718)
++.+.|...|+.+|+..-
T Consensus 468 ~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 468 EGSEQIERSHLAEAISYR 485 (490)
T ss_pred cCcchhhHHHHHHHHhhh
Confidence 999999999999999753
No 22
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.1e-22 Score=199.03 Aligned_cols=283 Identities=20% Similarity=0.247 Sum_probs=210.7
Q ss_pred CcccccHHHHHHHHHHHhCCccc-cCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceeeE
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHR-KLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAAV 413 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~-~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~~ 413 (718)
.+.+||+.+|..+.+++.+.... ...+ |+||+||||.|||+||.-+|+.+...+-+ +|......|-.++.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lD--------HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaai 97 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALD--------HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAI 97 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcC--------eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHH
Confidence 37899999999998888654321 1223 99999999999999999999998654332 22221111111110
Q ss_pred eecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEe--eC--CeEEEec-CceEEEEEeCCCCC
Q 005024 414 QRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIA--KA--GITTSLN-ARTAVLSAANPAWG 488 (718)
Q Consensus 414 ~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~--k~--g~~~~l~-~~~~viaa~Np~~g 488 (718)
.-.+..+.|+|||||+++++..-..|..+||+-.+.+. ++ .....++ +.|.+|+||....
T Consensus 98 --------------Lt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G- 162 (332)
T COG2255 98 --------------LTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG- 162 (332)
T ss_pred --------------HhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc-
Confidence 01133567999999999999999999999999877663 21 1223333 5899999998876
Q ss_pred CCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCC
Q 005024 489 RYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPC 567 (718)
Q Consensus 489 ~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ 567 (718)
.++.||.+||.++..+ ..|+.++|.+++..... ..-.
T Consensus 163 ------------~lt~PLrdRFGi~~rl------------------------------efY~~~eL~~Iv~r~a~~l~i~ 200 (332)
T COG2255 163 ------------MLTNPLRDRFGIIQRL------------------------------EFYTVEELEEIVKRSAKILGIE 200 (332)
T ss_pred ------------cccchhHHhcCCeeee------------------------------ecCCHHHHHHHHHHHHHHhCCC
Confidence 8999999999988754 44778888888877655 5668
Q ss_pred CCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccccccccccc
Q 005024 568 VPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQR 647 (718)
Q Consensus 568 ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~ 647 (718)
+++++...|... +.+|+|-+..|+|...-.|..++...|+.+-+.+|+..+......+
T Consensus 201 i~~~~a~eIA~r---------------SRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd~~GL------- 258 (332)
T COG2255 201 IDEEAALEIARR---------------SRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKMLDVDELGL------- 258 (332)
T ss_pred CChHHHHHHHHh---------------ccCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHhCcccccc-------
Confidence 999999888873 6899999999999999999999999999999999998765433322
Q ss_pred CccchH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHH-HHHhcCeEEEeCCeeEEE
Q 005024 648 SGLDAI-SDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLE-EYAALNVWQIHPHTFDIR 714 (718)
Q Consensus 648 ~~~~~~-~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g~i~~~~~~~~i~ 714 (718)
+.. .+++.+ +....++..+.++.+ |...|.++.++++.++ .|.+.|+++++..|+.++
T Consensus 259 ---d~~D~k~L~~---li~~f~GgPVGl~ti---a~~lge~~~TiEdv~EPyLiq~gfi~RTpRGR~aT 318 (332)
T COG2255 259 ---DEIDRKYLRA---LIEQFGGGPVGLDTI---AAALGEDRDTIEDVIEPYLIQQGFIQRTPRGRIAT 318 (332)
T ss_pred ---cHHHHHHHHH---HHHHhCCCCccHHHH---HHHhcCchhHHHHHHhHHHHHhchhhhCCCcceec
Confidence 111 233433 344555556777766 4456899999999999 779999999999998765
No 23
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.91 E-value=1.9e-22 Score=216.42 Aligned_cols=270 Identities=17% Similarity=0.180 Sum_probs=194.1
Q ss_pred HHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---eeecCC
Q 005024 326 IYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---VYTTGR 402 (718)
Q Consensus 326 ~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~~~~~~ 402 (718)
.+..+.+.+...|+|++++.+.++.++.+|. ||||.||||||||++|++++..+.+. .+....
T Consensus 10 ~i~~l~~~l~~~i~gre~vI~lll~aalag~--------------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ 75 (498)
T PRK13531 10 RISRLSSALEKGLYERSHAIRLCLLAALSGE--------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR 75 (498)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHccCC--------------CEEEECCCChhHHHHHHHHHHHhcccCcceeeeee
Confidence 3567888999999999998888887776664 99999999999999999999987542 111111
Q ss_pred CCCCCcceeeE-eec-cccccee-eecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 403 GSSGVGLTAAV-QRD-NVTNEMV-LEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 403 ~~~~~~l~~~~-~~~-~~~g~~~-~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
.++..++++.. .+. ...|.+. ..+|.+..++ ++|+|||+++++..|++|+++|+++.++. +|....+|.++.+
T Consensus 76 fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv 151 (498)
T PRK13531 76 FSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLV 151 (498)
T ss_pred ecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEE
Confidence 11223444432 121 1245553 5667665555 99999999999999999999999999987 4888899998888
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCCh-hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADM-DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYI 558 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~-~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i 558 (718)
+|+ |+.... -.+.+++++|| ++.+..++++. ++...|...-.. ....+....+.++.+++....
T Consensus 152 ~AT-N~LPE~----------g~~leAL~DRF-liri~vp~l~~~~~e~~lL~~~~~---~~~~~~~~~~vis~eel~~lq 216 (498)
T PRK13531 152 TAS-NELPEA----------DSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQQD---ENDNPVPASLQITDEEYQQWQ 216 (498)
T ss_pred EEC-CCCccc----------CCchHHhHhhE-EEEEECCCCCchHHHHHHHHcccc---cccCCCcccCCCCHHHHHHHH
Confidence 887 855310 04567999999 77777788874 343555433111 001111112348888888777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 559 SAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 559 ~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
..++++ .+++.+.++|.+....+|... ....+|+|....++++++|.|.+++|+.|+++|+. .+.-+..+
T Consensus 217 ~~v~~V--~v~d~v~eyI~~L~~~lr~~r-----~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 217 KEIGKI--TLPDHVFELIFQLRQQLDALP-----NAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHhcce--eCCHHHHHHHHHHHHHHhcCC-----CCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 766655 689999999988877666432 12348999999999999999999999999999999 44444443
No 24
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.90 E-value=5.5e-24 Score=204.41 Aligned_cols=167 Identities=28% Similarity=0.405 Sum_probs=101.7
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee----cCCCCCCCc---
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT----TGRGSSGVG--- 408 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~----~~~~~~~~~--- 408 (718)
.+|.||+.+|+|++.+.+|++ |+||+||||||||++|+.+..++|..... .....+..+
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~h--------------~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~ 68 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGGH--------------HLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGP 68 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S-
T ss_pred hhhcCcHHHHHHHHHHHcCCC--------------CeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCC
Confidence 589999999999999999987 99999999999999999999999865322 111111112
Q ss_pred ---ce-eeEeeccc---------ccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 409 ---LT-AAVQRDNV---------TNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 409 ---l~-~~~~~~~~---------~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
+. ...++.+. .|....++|.+.+||+||||+||++.+++....+|++.||++.+++.++|...++|+
T Consensus 69 ~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa 148 (206)
T PF01078_consen 69 DEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPA 148 (206)
T ss_dssp --EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB-
T ss_pred CCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEec
Confidence 11 11122221 244478999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCCC-CCCC-----CCCCcchh----cCCChhhhcccceEEEe
Q 005024 476 RTAVLSAANPAW-GRYD-----LRRTPAEN----INLPPALLSRFDLLWLI 516 (718)
Q Consensus 476 ~~~viaa~Np~~-g~~~-----~~~~~~~~----~~l~~~ll~Rfdli~~~ 516 (718)
+|.+|||+||.. |.|. +.++..+. -.++.+|+||||+.+.+
T Consensus 149 ~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~ 199 (206)
T PF01078_consen 149 RFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEV 199 (206)
T ss_dssp -EEEEEEE-S-----------------------------------------
T ss_pred ccEEEEEeccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999993 4442 22333332 37999999999998754
No 25
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.89 E-value=1.8e-22 Score=209.71 Aligned_cols=267 Identities=26% Similarity=0.293 Sum_probs=197.3
Q ss_pred cCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCC----C----
Q 005024 334 LAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS----S---- 405 (718)
Q Consensus 334 i~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~----~---- 405 (718)
.+..++|++.+|.+|++..+...-. .+||.|+.|||||+++|+++.++|......|.-. .
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~ig------------gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIG------------GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccc------------eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhh
Confidence 4457999999999999886543211 6999999999999999999999987643322200 0
Q ss_pred -----------------------CCcceeeEeec-----------ccccceeeecceEeeecCCeeeecccccCChHHHH
Q 005024 406 -----------------------GVGLTAAVQRD-----------NVTNEMVLEGGALVLADMGICAIDEFDKMDESDRT 451 (718)
Q Consensus 406 -----------------------~~~l~~~~~~~-----------~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~ 451 (718)
.+++.-..+.| ...|...++||.+..||+||+++||++.+++..++
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd 162 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVD 162 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHH
Confidence 11111111222 11366779999999999999999999999999999
Q ss_pred HHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhh
Q 005024 452 AIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARH 531 (718)
Q Consensus 452 ~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~ 531 (718)
.||.++++|.-.+.+.|+....|++|.+|||+||..| .|.++|+|||.+..-.....+.+....|...
T Consensus 163 ~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG------------eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 163 ALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG------------ELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred HHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc------------ccchhhHhhhcceeeccCCCCHHHHHHHHHH
Confidence 9999999987777777999999999999999999988 8999999999999887666677777777666
Q ss_pred hhhhccCCCCCCCCCCC--CCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHH
Q 005024 532 VVYVHQNKESPALGFTP--LEPAILRAYISAARRL--SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILR 607 (718)
Q Consensus 532 il~~~~~~~~~~~~~~~--~~~~~l~~~i~~~~~~--~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lir 607 (718)
.+..... |...... =....|+..+..+++. ...+++++..++.+....+- -.+.|.-..+.|
T Consensus 231 ~~~f~~~---Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~-----------v~g~radi~~~r 296 (423)
T COG1239 231 RLAFEAV---PEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLA-----------VDGHRADIVVVR 296 (423)
T ss_pred HHHhhcC---cHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhc-----------cCCCchhhHHHH
Confidence 5543110 0000000 1223344444445553 23578888888887764432 122688889999
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHhhhcc
Q 005024 608 ISAALARLRFSETVAQSDVDEALRLMQMSKF 638 (718)
Q Consensus 608 la~a~A~l~~~~~V~~~dv~~ai~l~~~~~~ 638 (718)
.|.++|.++++.+|+.+|+++|..+...++.
T Consensus 297 ~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~ 327 (423)
T COG1239 297 AAKALAALRGRTEVEEEDIREAAELALLHRR 327 (423)
T ss_pred HHHHHHHhcCceeeehhhHHHHHhhhhhhhh
Confidence 9999999999999999999999998876644
No 26
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.88 E-value=3.6e-21 Score=205.08 Aligned_cols=277 Identities=24% Similarity=0.301 Sum_probs=203.4
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee--cCCCC
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT--TGRGS 404 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~--~~~~~ 404 (718)
...+...+.+.++|.+.++..++.++..|. |+||.|+||||||++++.+++.+...++. +....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~--------------~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAGG--------------HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcCC--------------CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 345667788889999999888887777665 99999999999999999999999765443 33333
Q ss_pred CCCcceeeEeeccc---ccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeE-EEecCceEEE
Q 005024 405 SGVGLTAAVQRDNV---TNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGIT-TSLNARTAVL 480 (718)
Q Consensus 405 ~~~~l~~~~~~~~~---~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~-~~l~~~~~vi 480 (718)
....+++....... .+.+.+.+|.+..+.++++++|||++.+++.|++|+++|+++.+++. |.. ..++..+.++
T Consensus 81 ~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~--~~~~~~~~~~f~vi 158 (329)
T COG0714 81 LPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVP--GLTTIRLPPPFIVI 158 (329)
T ss_pred CHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEEC--CcCCcCCCCCCEEE
Confidence 33455555544444 67788999999988778999999999999999999999999999997 666 8899999999
Q ss_pred EEeCCC--CCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHH-HhhhhhhccCCCCCCCCCCC-CCHHHHHH
Q 005024 481 SAANPA--WGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEM-ARHVVYVHQNKESPALGFTP-LEPAILRA 556 (718)
Q Consensus 481 aa~Np~--~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i-~~~il~~~~~~~~~~~~~~~-~~~~~l~~ 556 (718)
||+||. .|.+ .+++|+++|| ++.+..++|+......+ ..+........ ......+ ++...+.+
T Consensus 159 aT~Np~e~~g~~----------~l~eA~ldRf-~~~~~v~yp~~~~e~~~i~~~~~~~~~~~--~~~~v~~~~~~~~~~~ 225 (329)
T COG0714 159 ATQNPGEYEGTY----------PLPEALLDRF-LLRIYVDYPDSEEEERIILARVGGVDELD--LESLVKPVLSDEELLR 225 (329)
T ss_pred EccCccccCCCc----------CCCHHHHhhE-EEEEecCCCCchHHHHHHHHhCccccccc--cchhhhhhhCHHHHHH
Confidence 999987 5777 8999999999 45566699965554433 32222111000 0001111 22222222
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 557 YISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 557 ~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
...... ...+++++.+++.......|... ...+..++|....++..+.+.|.+.++..+..+|+.........+
T Consensus 226 ~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~ 299 (329)
T COG0714 226 LQKEVK--KVPVSDEVIDYIVTLVAALREAP----DVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAH 299 (329)
T ss_pred HHhhhc--cCCchHHHHHHHHHHHHhhcccc----chhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhh
Confidence 222111 34678888888888877776642 134677899999999999999999999999999998877666555
Q ss_pred cc
Q 005024 637 KF 638 (718)
Q Consensus 637 ~~ 638 (718)
..
T Consensus 300 ~~ 301 (329)
T COG0714 300 RL 301 (329)
T ss_pred hh
Confidence 43
No 27
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.87 E-value=4.1e-21 Score=215.13 Aligned_cols=241 Identities=21% Similarity=0.233 Sum_probs=183.9
Q ss_pred cHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC--ceeecCCCCCCCcceeeEee--c
Q 005024 341 HEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR--GVYTTGRGSSGVGLTAAVQR--D 416 (718)
Q Consensus 341 ~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~--~~~~~~~~~~~~~l~~~~~~--~ 416 (718)
++.+|.|+++..+.... -| .|||.|++|||||++++.++.++|. .+.....+.+...|.+..-- .
T Consensus 8 ~~~~~~Al~l~av~p~~----~g-------Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDPAG----LG-------GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCccc----cc-------eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 78899999988876521 01 5999999999999999999999986 33334444444444443210 1
Q ss_pred ccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCc
Q 005024 417 NVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTP 496 (718)
Q Consensus 417 ~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~ 496 (718)
-..|...+++|.+.+||+|||||||++.+++..++.|+++|++|.+++.++|...++|++|.+||+.|+....+
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~------ 150 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDE------ 150 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhccc------
Confidence 11455568999999999999999999999999999999999999999999999999999999999977663223
Q ss_pred chhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-c-CCCCCHHHHH
Q 005024 497 AENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-L-SPCVPRELEE 574 (718)
Q Consensus 497 ~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~-~p~ls~~~~~ 574 (718)
.++++++||||+.+.+ +++...... -...+.+.+ ..++. + ...++++..+
T Consensus 151 ----~L~~~lLDRf~l~v~v-~~~~~~~~~-------------------~~~~~~~~I----~~AR~rl~~v~v~~~~l~ 202 (584)
T PRK13406 151 ----RAPAALADRLAFHLDL-DGLALRDAR-------------------EIPIDADDI----AAARARLPAVGPPPEAIA 202 (584)
T ss_pred ----CCCHHhHhheEEEEEc-CCCChHHhc-------------------ccCCCHHHH----HHHHHHHccCCCCHHHHH
Confidence 8999999999998776 444332211 011223322 23333 2 3468888888
Q ss_pred HHHHHHHHhhHhhhhcCCCCccc-CHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcc
Q 005024 575 YIAAAYSNIRQEEAKSNTPHSYT-TVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKF 638 (718)
Q Consensus 575 ~l~~~y~~lr~~~~~~~~~~~~~-s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~ 638 (718)
++.+.+.. ..+ +.|....++|.|.++|.+++++.|+.+||.+|+.++..++.
T Consensus 203 ~i~~~~~~------------~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~ 255 (584)
T PRK13406 203 ALCAAAAA------------LGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPRA 255 (584)
T ss_pred HHHHHHHH------------hCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhc
Confidence 87766542 344 88999999999999999999999999999999999987755
No 28
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.85 E-value=4e-21 Score=192.59 Aligned_cols=264 Identities=16% Similarity=0.146 Sum_probs=186.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce-----eecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV-----YTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKM 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~ 445 (718)
++||.|++||||..+|+++|..+||.. ..|...+.. ...+..+...-| -.-..|.+.+|++|++++|||..|
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~--~aEsElFG~apg-~~gk~GffE~AngGTVlLDeIgEm 305 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED--AAESELFGHAPG-DEGKKGFFEQANGGTVLLDEIGEM 305 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh--HhHHHHhcCCCC-CCCccchhhhccCCeEEeehhhhc
Confidence 799999999999999999999998862 123222211 111111111111 234568899999999999999999
Q ss_pred ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC------CCCCCCCCCcchhcCCChhhhcccceEEEeccC
Q 005024 446 DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA------WGRYDLRRTPAENINLPPALLSRFDLLWLILDR 519 (718)
Q Consensus 446 ~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~------~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~ 519 (718)
++..|.+|++.+.+|++... |.......+++||+|+.-+ .|+| |-||++.+
T Consensus 306 Sp~lQaKLLRFL~DGtFRRV--Gee~Ev~vdVRVIcatq~nL~~lv~~g~f------------------ReDLfyRL--- 362 (511)
T COG3283 306 SPRLQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICATQVNLVELVQKGKF------------------REDLFYRL--- 362 (511)
T ss_pred CHHHHHHHHHHhcCCceeec--CCcceEEEEEEEEecccccHHHHHhcCch------------------HHHHHHHh---
Confidence 99999999999999999877 8888899999999999877 5766 77777654
Q ss_pred CChhHHHHHHhhhhhhccCCCC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccC
Q 005024 520 ADMDSDLEMARHVVYVHQNKES-PALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTT 598 (718)
Q Consensus 520 ~~~~~d~~i~~~il~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s 598 (718)
+++.++.++.. ...++.|+...++.++........|.++++...++..| .||||
T Consensus 363 -----------NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y--------------~WpGN 417 (511)
T COG3283 363 -----------NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY--------------AWPGN 417 (511)
T ss_pred -----------heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc--------------CCCcc
Confidence 45555555433 34678889999999888877777899999999999987 79999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccCccchHHHHH-HHHHHHHHhcCCCcccHHHH
Q 005024 599 VRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIY-SILRDEAARSNKLDVSYAHA 677 (718)
Q Consensus 599 ~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~i~~~~~~~~~~~~~~~~l 677 (718)
+|+|.+.+-.|.+.. ....++.+|+.-+-.-... ...+.....+..+.+..+. ..+..+..++.+ -
T Consensus 418 VRqL~N~iyRA~s~~---Eg~~l~i~~i~Lp~~~~~~---~~~~~~~~gsLdei~~~fE~~VL~rly~~yPS-------t 484 (511)
T COG3283 418 VRQLKNAIYRALTLL---EGYELRIEDILLPDYDAAT---VVGEDALEGSLDEIVSRFERSVLTRLYRSYPS-------T 484 (511)
T ss_pred HHHHHHHHHHHHHHh---ccCccchhhcccCCccccc---ccchhhccCCHHHHHHHHHHHHHHHHHHhCCc-------H
Confidence 999999999887665 5667888887633211000 0001111111112222222 234454444432 3
Q ss_pred HHHHHHcCCCHHHHHHHHHHH
Q 005024 678 LNWISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 678 ~~~~~~~g~~~~~~~~~l~~l 698 (718)
.+.|+++|++.+.+..+|++|
T Consensus 485 RkLAkRLgvSHTaIAnKLRqy 505 (511)
T COG3283 485 RKLAKRLGVSHTAIANKLRQY 505 (511)
T ss_pred HHHHHHhCCcHHHHHHHHHHh
Confidence 567889999999999988877
No 29
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.85 E-value=2.8e-20 Score=206.52 Aligned_cols=299 Identities=16% Similarity=0.134 Sum_probs=183.5
Q ss_pred CCcccccHHHHHHHHHHH--hCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHH--------CCCc---ee--e
Q 005024 335 APEIYGHEDIKKALLLLL--VGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINV--------APRG---VY--T 399 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l--~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~--------~~~~---~~--~ 399 (718)
..+++|....-..+...+ +..+ +.+|||.|++||||+.+|++||.. +++. ++ .
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s------------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARS------------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCC------------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 345888776544443332 2221 228999999999999999999998 5442 22 2
Q ss_pred cCCCCCCCcceeeEeec----ccccce-eeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEec
Q 005024 400 TGRGSSGVGLTAAVQRD----NVTNEM-VLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLN 474 (718)
Q Consensus 400 ~~~~~~~~~l~~~~~~~----~~~g~~-~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~ 474 (718)
|+..+. .+..+..+. .++|.. ...+|.+..|++|++|||||+.|+...|..|+++++++.+... |.....+
T Consensus 286 Caal~e--~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~--G~~~~~~ 361 (538)
T PRK15424 286 CGAIAE--SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV--GGHQPVP 361 (538)
T ss_pred cccCCh--hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEec--CCCceec
Confidence 443322 111222222 223332 2456889999999999999999999999999999999988765 7777888
Q ss_pred CceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHH
Q 005024 475 ARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAIL 554 (718)
Q Consensus 475 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l 554 (718)
.++++|+|+|..-.. ..+.-.+.+.|+.|+..+-+-. |...+ ..++++.+...++
T Consensus 362 ~dvRiIaat~~~L~~------~v~~g~Fr~dL~yrL~~~~I~l--PPLRe-----------------R~eDI~~L~~~fl 416 (538)
T PRK15424 362 VDVRVISATHCDLEE------DVRQGRFRRDLFYRLSILRLQL--PPLRE-----------------RVADILPLAESFL 416 (538)
T ss_pred cceEEEEecCCCHHH------HHhcccchHHHHHHhcCCeecC--CChhh-----------------chhHHHHHHHHHH
Confidence 999999999977100 0000134556666665443322 22111 1123344444555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Q 005024 555 RAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQ 634 (718)
Q Consensus 555 ~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~ 634 (718)
+++ +......+++++...+.+....|... +||+|+|+|+++++.+...+.-.....++.+++.....
T Consensus 417 ~~~---~~~~~~~~~~~a~~~~~~a~~~L~~y-------~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~~~~~--- 483 (538)
T PRK15424 417 KQS---LAALSAPFSAALRQGLQQCETLLLHY-------DWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQLLLP--- 483 (538)
T ss_pred HHH---HHHcCCCCCHHHHHhhHHHHHHHHhC-------CCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhhhhcc---
Confidence 543 22333347888776555544444443 69999999999999876654322234577776542111
Q ss_pred hhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005024 635 MSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEYAA 700 (718)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~ 700 (718)
... ..... ........+.|...+...+++ ..++|+.+||+++++|++|++|..
T Consensus 484 -~~~---~~~~~---~~~~~~Er~~I~~~L~~~~Gn------~~~aA~~LGIsRtTL~RkLk~~g~ 536 (538)
T PRK15424 484 -ELA---RESAK---TPAPRLLAATLQQALERFNGD------KTAAANYLGISRTTLWRRLKAEAK 536 (538)
T ss_pred -ccc---ccccc---cchhHHHHHHHHHHHHHhCCC------HHHHHHHhCCCHHHHHHHHHHhCC
Confidence 000 00000 001112344667777777654 678899999999999999998743
No 30
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.84 E-value=2.9e-20 Score=196.63 Aligned_cols=276 Identities=15% Similarity=0.082 Sum_probs=175.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---ee--ecCCCCCCCcceeeE----eecccccceeeecceEeeecCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VY--TTGRGSSGVGLTAAV----QRDNVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~--~~~~~~~~~~l~~~~----~~~~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
+|||.|++||||+.+|++||..+++. +. .|+..+. .+..+. .+..++|......|.+..|++|++||||
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~--~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Lde 101 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE--NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDE 101 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh--HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCC
Confidence 89999999999999999999998753 22 2443221 111111 1223445445567889999999999999
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCC
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRAD 521 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~ 521 (718)
|+.|+.+.|..|+++++++.+... |.....+.++++|+|+|...... ...-.+.+.|+.|+....+- .|.
T Consensus 102 i~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~at~~~l~~~------~~~g~fr~dL~~rl~~~~i~--lPp 171 (329)
T TIGR02974 102 LATASLLVQEKLLRVIEYGEFERV--GGSQTLQVDVRLVCATNADLPAL------AAEGRFRADLLDRLAFDVIT--LPP 171 (329)
T ss_pred hHhCCHHHHHHHHHHHHcCcEEec--CCCceeccceEEEEechhhHHHH------hhcCchHHHHHHHhcchhcC--CCc
Confidence 999999999999999999987655 76777888999999999762100 01115677888888654432 222
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLS-PCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVR 600 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R 600 (718)
..+. .++++.+...++.++........ +.+++++.+.|..| .||+|+|
T Consensus 172 LReR-----------------~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y--------------~WPGNvr 220 (329)
T TIGR02974 172 LRER-----------------QEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY--------------HWPGNVR 220 (329)
T ss_pred hhhh-----------------hhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC--------------CCCchHH
Confidence 2111 12333344445555432221222 57999999999987 7999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHH-H--H-----HHhhhcc------cccccc----cc-cCccchH-HHHHHHH
Q 005024 601 TLLSILRISAALARLRFSETVAQSDVDEA-L--R-----LMQMSKF------SLYSDD----RQ-RSGLDAI-SDIYSIL 660 (718)
Q Consensus 601 ~l~~lirla~a~A~l~~~~~V~~~dv~~a-i--~-----l~~~~~~------~~~~~~----~~-~~~~~~~-~~i~~~i 660 (718)
+|+++++.+...+ ..+.++.+|+... . . ....... ...... .. ......+ +....+|
T Consensus 221 EL~n~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~E~~~I 297 (329)
T TIGR02974 221 ELKNVVERSVYRH---GLEEAPIDEIIIDPFASPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDLKQAQQDYEIELL 297 (329)
T ss_pred HHHHHHHHHHHhC---CCCccchhhccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 9999999876655 2345555553100 0 0 0000000 000000 00 0001111 2233467
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005024 661 RDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 698 (718)
...+..++++ +.++|+.+||++++++++|++|
T Consensus 298 ~~aL~~~~gn------~~~aA~~LGisr~tL~rklkk~ 329 (329)
T TIGR02974 298 QQALAEAQFN------QRKAAELLGLTYHQLRGLLRKH 329 (329)
T ss_pred HHHHHHhCCC------HHHHHHHhCCCHHHHHHHHHhC
Confidence 7777777755 7888999999999999999875
No 31
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=2e-20 Score=180.66 Aligned_cols=200 Identities=25% Similarity=0.311 Sum_probs=131.3
Q ss_pred cCCcccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCccee
Q 005024 334 LAPEIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTA 411 (718)
Q Consensus 334 i~p~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~ 411 (718)
-..+++||+.++..+...+-.... ....+ |+||+||||+|||+||+.+|+.+...+.. +|......+-.+
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~--------h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~ 93 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALD--------HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLA 93 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS-----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcc--------eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHH
Confidence 334899999998876544432110 00112 99999999999999999999998766543 221111110000
Q ss_pred eEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEe-eCC---eEEEec-CceEEEEEeCCC
Q 005024 412 AVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIA-KAG---ITTSLN-ARTAVLSAANPA 486 (718)
Q Consensus 412 ~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~-k~g---~~~~l~-~~~~viaa~Np~ 486 (718)
.. + ..+..+.|+|||||+++++..|..|+.+||++.+.+. ..| ....++ .+|++|+||+..
T Consensus 94 ~i----------l----~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~ 159 (233)
T PF05496_consen 94 AI----------L----TNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA 159 (233)
T ss_dssp HH----------H----HT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG
T ss_pred HH----------H----HhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc
Confidence 00 0 0123567999999999999999999999999999653 223 233444 589999999988
Q ss_pred CCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cC
Q 005024 487 WGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LS 565 (718)
Q Consensus 487 ~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~ 565 (718)
. .++.||.+||.++..+ ..|+.++|.+++..... ..
T Consensus 160 g-------------~ls~pLrdRFgi~~~l------------------------------~~Y~~~el~~Iv~r~a~~l~ 196 (233)
T PF05496_consen 160 G-------------LLSSPLRDRFGIVLRL------------------------------EFYSEEELAKIVKRSARILN 196 (233)
T ss_dssp C-------------CTSHCCCTTSSEEEE----------------------------------THHHHHHHHHHCCHCTT
T ss_pred c-------------ccchhHHhhcceecch------------------------------hcCCHHHHHHHHHHHHHHhC
Confidence 6 8999999999888643 45788899999987655 45
Q ss_pred CCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHH
Q 005024 566 PCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALA 613 (718)
Q Consensus 566 p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A 613 (718)
-.+++++...|.. ...||+|-+.+++|.+..+|
T Consensus 197 i~i~~~~~~~Ia~---------------rsrGtPRiAnrll~rvrD~a 229 (233)
T PF05496_consen 197 IEIDEDAAEEIAR---------------RSRGTPRIANRLLRRVRDFA 229 (233)
T ss_dssp -EE-HHHHHHHHH---------------CTTTSHHHHHHHHHHHCCCC
T ss_pred CCcCHHHHHHHHH---------------hcCCChHHHHHHHHHHHHHH
Confidence 5799999999887 47899999999999876554
No 32
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.84 E-value=2.9e-20 Score=206.84 Aligned_cols=303 Identities=16% Similarity=0.099 Sum_probs=186.7
Q ss_pred CcccccHHHHHHHHHHH--hCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---eee--cCCCCCCCc
Q 005024 336 PEIYGHEDIKKALLLLL--VGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---VYT--TGRGSSGVG 408 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l--~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~~~--~~~~~~~~~ 408 (718)
.+++|....-+.+...+ +... +.+|||.|++||||+++|+++|..+++. ++. |+..+. .
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~------------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e--~ 277 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARS------------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE--S 277 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC------------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh--h
Confidence 35788776544444332 2222 2289999999999999999999988653 222 443322 1
Q ss_pred ceeeEee----cccccce-eeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEe
Q 005024 409 LTAAVQR----DNVTNEM-VLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAA 483 (718)
Q Consensus 409 l~~~~~~----~~~~g~~-~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~ 483 (718)
+..+..+ ..++|.. ...+|.+..|++|++|||||+.|+...|..|+++++++.+... |.....+.++++|+|+
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~--g~~~~~~~dvRiIaat 355 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRV--GGTEPVPVDVRVVAAT 355 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEec--CCCceeeecceEEecc
Confidence 2122122 2233332 1357888899999999999999999999999999999987655 7667788899999999
Q ss_pred CCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 005024 484 NPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR 563 (718)
Q Consensus 484 Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 563 (718)
|..... ..+.-.+...|+.|++.+-+-.++... ..++++.+...+++++.. .
T Consensus 356 ~~~l~~------~v~~g~fr~dL~~rL~~~~I~lPPLRe-------------------R~eDI~~L~~~fl~~~~~---~ 407 (526)
T TIGR02329 356 HCALTT------AVQQGRFRRDLFYRLSILRIALPPLRE-------------------RPGDILPLAAEYLVQAAA---A 407 (526)
T ss_pred CCCHHH------HhhhcchhHHHHHhcCCcEEeCCCchh-------------------chhHHHHHHHHHHHHHHH---H
Confidence 977210 001114566677777654442222221 112344444555555422 2
Q ss_pred cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccccccc
Q 005024 564 LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSD 643 (718)
Q Consensus 564 ~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~ 643 (718)
....+++++.+.+...+..|... +||+|+|+|+++++.+...+.......|+.+|+.....-.... .....
T Consensus 408 ~~~~~~~~a~~~~~~~~~~L~~y-------~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~~~~~~~--~~~~~ 478 (526)
T TIGR02329 408 LRLPDSEAAAQVLAGVADPLQRY-------PWPGNVRELRNLVERLALELSAMPAGALTPDVLRALAPELAEA--SGKGK 478 (526)
T ss_pred cCCCCCHHHHHHhHHHHHHHHhC-------CCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhhchhhccc--ccccc
Confidence 23358999988844443333332 6999999999999987766532234578888875433211000 00000
Q ss_pred ccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHH
Q 005024 644 DRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEE 697 (718)
Q Consensus 644 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~ 697 (718)
..........+...++|...+..++++ ..++|+.+||+++++|++|++
T Consensus 479 ~~~~~l~~~~~~Er~~I~~aL~~~~Gn------~~~aA~~LGIsRtTL~Rklk~ 526 (526)
T TIGR02329 479 TSALSLRERSRVEALAVRAALERFGGD------RDAAAKALGISRTTLWRRLKA 526 (526)
T ss_pred cCccchHHHHHHHHHHHHHHHHHcCCC------HHHHHHHhCCCHHHHHHHHhC
Confidence 000000011122345677777777755 678899999999999999863
No 33
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.83 E-value=1.5e-20 Score=165.39 Aligned_cols=125 Identities=29% Similarity=0.383 Sum_probs=90.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec--CCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT--GRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES 448 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~ 448 (718)
||||.|+||+|||++++++|+.+...+... .......++++..+.+..+++|.+.+|.+. .+++++||||+.++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif---~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF---TNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh---hceeeecccccCCHH
Confidence 899999999999999999999987654321 111223367777777777889999999888 579999999999999
Q ss_pred HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC--CCCCCCCCCcchhcCCChhhhccc
Q 005024 449 DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA--WGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 449 ~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~--~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
.|++|+++|+++.+++. |....+|..+.||||.||. .|.| .||++++|||
T Consensus 78 tQsAlLeam~Er~Vt~~--g~~~~lp~pf~ViATqNp~e~~Gty----------~Lpea~~DRF 129 (131)
T PF07726_consen 78 TQSALLEAMEERQVTID--GQTYPLPDPFFVIATQNPVEQEGTY----------PLPEAQLDRF 129 (131)
T ss_dssp HHHHHHHHHHHSEEEET--TEEEE--SS-EEEEEE-TT--S----------------HHHHTTS
T ss_pred HHHHHHHHHHcCeEEeC--CEEEECCCcEEEEEecCccccCcee----------cCCHHHhccc
Confidence 99999999999999997 9999999999999999997 6888 9999999999
No 34
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.83 E-value=2.2e-20 Score=202.77 Aligned_cols=254 Identities=19% Similarity=0.138 Sum_probs=176.5
Q ss_pred cccceeeecCCCcchHHHHHHHHHHHCCCc----eeecCCCCCCCcceeeEeec----cccccee-eecceEeeecCCee
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINVAPRG----VYTTGRGSSGVGLTAAVQRD----NVTNEMV-LEGGALVLADMGIC 437 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~~----~~~g~~~-~~~g~l~~a~~gil 437 (718)
+.++++|+.|+|||||..++++++..++.. ...|+..+. .+.++.... .++|.+. ...|.+.+|++|++
T Consensus 334 ~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~--~liesELFGy~~GafTga~~kG~~g~~~~A~gGtl 411 (606)
T COG3284 334 ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPE--ALIESELFGYVAGAFTGARRKGYKGKLEQADGGTL 411 (606)
T ss_pred hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchH--HhhhHHHhccCccccccchhccccccceecCCCcc
Confidence 445599999999999999999999998632 223544433 123332222 2344332 34589999999999
Q ss_pred eecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC------CCCCCCCCCcchhcCCChhhhcccc
Q 005024 438 AIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA------WGRYDLRRTPAENINLPPALLSRFD 511 (718)
Q Consensus 438 ~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~------~g~~~~~~~~~~~~~l~~~ll~Rfd 511 (718)
|+|||..|+...|++|++++++++|... |... .+.+++||+||+.+ .|+| |-|
T Consensus 412 FldeIgd~p~~~Qs~LLrVl~e~~v~p~--g~~~-~~vdirvi~ath~dl~~lv~~g~f------------------red 470 (606)
T COG3284 412 FLDEIGDMPLALQSRLLRVLQEGVVTPL--GGTR-IKVDIRVIAATHRDLAQLVEQGRF------------------RED 470 (606)
T ss_pred HHHHhhhchHHHHHHHHHHHhhCceecc--CCcc-eeEEEEEEeccCcCHHHHHHcCCc------------------hHH
Confidence 9999999999999999999999999887 7777 88999999999988 5777 666
Q ss_pred eEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcC
Q 005024 512 LLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSN 591 (718)
Q Consensus 512 li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~ 591 (718)
|+|.+. .+.+..++.....+..+ .|.++...-....-.+++++...|..|
T Consensus 471 LyyrL~--------------~~~i~lP~lr~R~d~~~----~l~~~~~~~~~~~~~l~~~~~~~l~~~------------ 520 (606)
T COG3284 471 LYYRLN--------------AFVITLPPLRERSDRIP----LLDRILKRENDWRLQLDDDALARLLAY------------ 520 (606)
T ss_pred HHHHhc--------------CeeeccCchhcccccHH----HHHHHHHHccCCCccCCHHHHHHHHhC------------
Confidence 666542 22222222222222222 344443332223336999999999987
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCc
Q 005024 592 TPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLD 671 (718)
Q Consensus 592 ~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 671 (718)
.||||+|+|.++++.+.+++ ....|...|+...+.--.... ..+....+|...+..++++
T Consensus 521 --~WPGNirel~~v~~~~~~l~---~~g~~~~~dlp~~l~~~~~~~--------------~~~~~~~~l~~al~~~~~~- 580 (606)
T COG3284 521 --RWPGNIRELDNVIERLAALS---DGGRIRVSDLPPELLEEQATP--------------REDIEKAALLAALQATNGN- 580 (606)
T ss_pred --CCCCcHHHHHHHHHHHHHcC---CCCeeEcccCCHHHHhhhccc--------------ccchHHHHHHHHHHHcCCC-
Confidence 79999999999999887776 677788888877654221111 1111233444445555544
Q ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005024 672 VSYAHALNWISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 672 ~~~~~l~~~~~~~g~~~~~~~~~l~~l 698 (718)
+.++++.+|+++++++++|+++
T Consensus 581 -----is~aa~~lgi~R~T~yrklk~~ 602 (606)
T COG3284 581 -----ISEAARLLGISRSTLYRKLKRH 602 (606)
T ss_pred -----HHHHHHHhCCCHHHHHHHHHHh
Confidence 7889999999999999998876
No 35
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.82 E-value=3.6e-19 Score=201.97 Aligned_cols=172 Identities=19% Similarity=0.199 Sum_probs=128.8
Q ss_pred eecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCC-----e---EEEecCceEEEEEeCCCCCCCCCCCC
Q 005024 424 LEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAG-----I---TTSLNARTAVLSAANPAWGRYDLRRT 495 (718)
Q Consensus 424 ~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g-----~---~~~l~~~~~viaa~Np~~g~~~~~~~ 495 (718)
.++|.+..|++|++||||++.|++..|..|+++|+++++.+.... . ....|+++.+|+++|+...
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l------- 280 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL------- 280 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH-------
Confidence 579999999999999999999999999999999999999886321 1 2346789999999998621
Q ss_pred cchhcCCChhhhcccc---eEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH-HHh--cCCCCC
Q 005024 496 PAENINLPPALLSRFD---LLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA-ARR--LSPCVP 569 (718)
Q Consensus 496 ~~~~~~l~~~ll~Rfd---li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~--~~p~ls 569 (718)
..++++|++||+ +.+.+.+..+...+. .+.+.+++.. +++ ..|.++
T Consensus 281 ----~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~------------------------~~~~~~~i~~~~~r~G~l~~~s 332 (608)
T TIGR00764 281 ----EGMHPALRSRIRGYGYEVYMKDTMPDTPEN------------------------RDKLVQFVAQEVKKDGRIPHFT 332 (608)
T ss_pred ----hhcCHHHHHHhcCCeEEEEeeccCCCCHHH------------------------HHHHHHHHHHHHHHhCCCCcCC
Confidence 168999999999 544443322211111 0111222222 222 357899
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 570 RELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 570 ~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
+++.+.|.++|...- +.+..++++.|++.+++|.|..+|+.+++..|+.+||.+|++....
T Consensus 333 ~~Av~~Li~~~~R~a-----g~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 333 RDAVEEIVREAQRRA-----GRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHHHHHHHHHHHH-----hcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 999999999876542 2244689999999999999999999999999999999999876543
No 36
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.82 E-value=8.5e-20 Score=211.82 Aligned_cols=272 Identities=13% Similarity=0.037 Sum_probs=174.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---ee--ecCCCCCCCcceeeEeeccccc-ceeeecceEeeecCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VY--TTGRGSSGVGLTAAVQRDNVTN-EMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~--~~~~~~~~~~l~~~~~~~~~~g-~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
+|||.|++||||+.+|+++|..+++. ++ .|+..+. .+..+......++ .....+|.+..|++|++|||||+.
T Consensus 350 pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~--~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~ 427 (638)
T PRK11388 350 PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD--EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEY 427 (638)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh--HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhh
Confidence 89999999999999999999988643 22 2443322 1111111111111 123456788899999999999999
Q ss_pred CChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhH
Q 005024 445 MDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDS 524 (718)
Q Consensus 445 ~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~ 524 (718)
|+.+.|..|+++++++.+... |.....+.++++|+|+|..... +.+.-.+.+.|+.|+...-+-.++...
T Consensus 428 l~~~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~t~~~l~~------~~~~~~f~~dL~~~l~~~~i~lPpLre-- 497 (638)
T PRK11388 428 LSPELQSALLQVLKTGVITRL--DSRRLIPVDVRVIATTTADLAM------LVEQNRFSRQLYYALHAFEITIPPLRM-- 497 (638)
T ss_pred CCHHHHHHHHHHHhcCcEEeC--CCCceEEeeEEEEEeccCCHHH------HHhcCCChHHHhhhhceeEEeCCChhh--
Confidence 999999999999999988755 6666777899999999976200 000013455566666554432222211
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHH
Q 005024 525 DLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLS 604 (718)
Q Consensus 525 d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~ 604 (718)
. .++++.+...+++++..... ..+.+++++.+.|..| .||+|+|+|++
T Consensus 498 R-----------------~~Di~~L~~~~l~~~~~~~~-~~~~~s~~a~~~L~~y--------------~WPGNvreL~~ 545 (638)
T PRK11388 498 R-----------------REDIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSY--------------RWPGNDFELRS 545 (638)
T ss_pred h-----------------hhHHHHHHHHHHHHHHHHhC-CCCCcCHHHHHHHHcC--------------CCCChHHHHHH
Confidence 1 12333344445555432111 2357999999999987 79999999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccCc-cchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 005024 605 ILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSG-LDAISDIYSILRDEAARSNKLDVSYAHALNWISR 683 (718)
Q Consensus 605 lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~ 683 (718)
+++.+...+ ....|+.+|+...+..- .... ......... ....+...++|...+..++++ +.++|+.
T Consensus 546 ~l~~~~~~~---~~~~i~~~~lp~~~~~~-~~~~--~~~~~~~~~~~~l~~~E~~~i~~al~~~~gn------~~~aA~~ 613 (638)
T PRK11388 546 VIENLALSS---DNGRIRLSDLPEHLFTE-QATD--DVSATRLSTSLSLAELEKEAIINAAQVCGGR------IQEMAAL 613 (638)
T ss_pred HHHHHHHhC---CCCeecHHHCchhhhcc-cccc--cccccccccchhHHHHHHHHHHHHHHHhCCC------HHHHHHH
Confidence 999876654 45679999987665320 0000 000000000 112223345677777777755 6789999
Q ss_pred cCCCHHHHHHHHHHH
Q 005024 684 KGYSEAQLKECLEEY 698 (718)
Q Consensus 684 ~g~~~~~~~~~l~~l 698 (718)
+||++++++++|++|
T Consensus 614 LGisR~TLyrklk~~ 628 (638)
T PRK11388 614 LGIGRTTLWRKMKQH 628 (638)
T ss_pred HCCCHHHHHHHHHHc
Confidence 999999999999876
No 37
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.82 E-value=8.4e-20 Score=205.36 Aligned_cols=304 Identities=16% Similarity=0.137 Sum_probs=189.3
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---e--eecCCCCCC---C
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---V--YTTGRGSSG---V 407 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~--~~~~~~~~~---~ 407 (718)
..++|+...-+.+.-.+..-- ..+.+|||+|++||||+.+|++++..+++. + ..|...+.. .
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~ 256 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAES 256 (509)
T ss_pred CceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHH
Confidence 468888776555553332110 112289999999999999999999998753 2 224433221 0
Q ss_pred cceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCC
Q 005024 408 GLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAW 487 (718)
Q Consensus 408 ~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~ 487 (718)
.|++. .+..++|...-..|.+..|++|++|||||+.|+.+.|..|+++++++.+... |.....+.++++|+|+|...
T Consensus 257 ~lfG~-~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~~t~~~l 333 (509)
T PRK05022 257 ELFGH-VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRV--GSDRSLRVDVRVIAATNRDL 333 (509)
T ss_pred HhcCc-cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeC--CCCcceecceEEEEecCCCH
Confidence 11111 1223344434457888899999999999999999999999999999887554 66667788999999999772
Q ss_pred CCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 005024 488 GRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPC 567 (718)
Q Consensus 488 g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ 567 (718)
.. ....-.+...|+.|+..+-+..++.... .++++.+...+++++........+.
T Consensus 334 ~~------~~~~~~f~~dL~~rl~~~~i~lPpLreR-------------------~eDI~~L~~~fl~~~~~~~~~~~~~ 388 (509)
T PRK05022 334 RE------EVRAGRFRADLYHRLSVFPLSVPPLRER-------------------GDDVLLLAGYFLEQNRARLGLRSLR 388 (509)
T ss_pred HH------HHHcCCccHHHHhcccccEeeCCCchhc-------------------hhhHHHHHHHHHHHHHHHcCCCCCC
Confidence 00 0011146777777776554432222211 1233344455566543222223457
Q ss_pred CCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHhhhcccccccc
Q 005024 568 VPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFS---ETVAQSDVDEALRLMQMSKFSLYSDD 644 (718)
Q Consensus 568 ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~---~~V~~~dv~~ai~l~~~~~~~~~~~~ 644 (718)
+++++.+.|..| +||+|+|+|+++++.|...|.-... ..|+.+|+........ .........
T Consensus 389 ~s~~a~~~L~~y--------------~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~~~~~~~~~ 453 (509)
T PRK05022 389 LSPAAQAALLAY--------------DWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLDLPAEVAL-PPPEAAAAP 453 (509)
T ss_pred CCHHHHHHHHhC--------------CCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcCccccccc-Ccccccccc
Confidence 999999999987 7999999999999998877743211 1466776542210000 000000000
Q ss_pred --ccc-CccchH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005024 645 --RQR-SGLDAI-SDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 645 --~~~-~~~~~~-~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 698 (718)
... .....+ ....+.|.+.+..++++ ..++|+.+|+++++++++|++|
T Consensus 454 ~~~~~~~l~~~~~~~Er~~I~~aL~~~~gn------~~~aA~~LGisr~tL~rklk~~ 505 (509)
T PRK05022 454 AAVVSQNLREATEAFQRQLIRQALAQHQGN------WAAAARALELDRANLHRLAKRL 505 (509)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHhCCCHHHHHHHHHHc
Confidence 000 001111 22345677777777755 5688999999999999999987
No 38
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.82 E-value=5.2e-19 Score=187.44 Aligned_cols=276 Identities=12% Similarity=0.078 Sum_probs=171.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---eee--cCCCCCC---CcceeeEeecccccceeeecceEeeecCCeeeeccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VYT--TGRGSSG---VGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEF 442 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~~--~~~~~~~---~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi 442 (718)
+|||+|++||||+.+|+++|..+++. ++. |+..+.. ..+.+. .+..++|......|.+..|++|++||||+
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~-~~~~~~g~~~~~~g~l~~a~gGtL~l~~i 109 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH-EAGAFTGAQKRHPGRFERADGGTLFLDEL 109 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccc-cccccCCcccccCCchhccCCCeEEeCCh
Confidence 89999999999999999999988743 222 4332211 011111 11222333334578888999999999999
Q ss_pred ccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCCh
Q 005024 443 DKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADM 522 (718)
Q Consensus 443 ~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~ 522 (718)
+.|+...|..|+++++++.+... |.....+.++++|+|++..... +.+.-.+...|+.||....+-.++...
T Consensus 110 ~~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~s~~~l~~------l~~~g~f~~dL~~~l~~~~i~lPpLRe 181 (326)
T PRK11608 110 ATAPMLVQEKLLRVIEYGELERV--GGSQPLQVNVRLVCATNADLPA------MVAEGKFRADLLDRLAFDVVQLPPLRE 181 (326)
T ss_pred hhCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCchhHHH------HHHcCCchHHHHHhcCCCEEECCChhh
Confidence 99999999999999999887654 6666778899999999976200 001115678888898654443222221
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
. .++++.+...++.++...... ..+.+++++.+.|..| +||+|+|+
T Consensus 182 R-------------------~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y--------------~WPGNvrE 228 (326)
T PRK11608 182 R-------------------QSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNY--------------RWPGNIRE 228 (326)
T ss_pred h-------------------hhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhC--------------CCCcHHHH
Confidence 1 123333444455554221111 1257999999999987 79999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHH-HHHHHhhhccccc-cc--c-ccc--Cccch-HHHHHHHHHHHHHhcCCCccc
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDE-ALRLMQMSKFSLY-SD--D-RQR--SGLDA-ISDIYSILRDEAARSNKLDVS 673 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~-ai~l~~~~~~~~~-~~--~-~~~--~~~~~-~~~i~~~i~~~~~~~~~~~~~ 673 (718)
|+++++.+...+ ..+.++.+|+.- .... ........ .. . ... ..... .+...++|...+..++++
T Consensus 229 L~~vl~~a~~~~---~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Er~~I~~aL~~~~gn--- 301 (326)
T PRK11608 229 LKNVVERSVYRH---GTSEYPLDNIIIDPFKR-RPAEEAIAVSETTSLPTLPLDLREWQHQQEKELLQRSLQQAKFN--- 301 (326)
T ss_pred HHHHHHHHHHhc---CCCCCchhhcccccccc-cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 999999876655 334455555410 0000 00000000 00 0 000 00001 122334577777776654
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 005024 674 YAHALNWISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 674 ~~~l~~~~~~~g~~~~~~~~~l~~l 698 (718)
..++|+.+|+++++++++|++|
T Consensus 302 ---~~~aA~~LGIsR~tLyrklk~~ 323 (326)
T PRK11608 302 ---QKRAAELLGLTYHQLRALLKKH 323 (326)
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHc
Confidence 7788999999999999999887
No 39
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.82 E-value=5.3e-19 Score=181.87 Aligned_cols=212 Identities=17% Similarity=0.201 Sum_probs=148.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee--cCCCCCCCcceeeEe----------------ecccccceeeecceEee-
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT--TGRGSSGVGLTAAVQ----------------RDNVTNEMVLEGGALVL- 431 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~--~~~~~~~~~l~~~~~----------------~~~~~g~~~~~~g~l~~- 431 (718)
|+||.||||||||++|+++|+.+...+.. +........+.+... +........+..|.+..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 89999999999999999999987665443 221111112222110 00001122455777775
Q ss_pred -ecCCeeeecccccCChHHHHHHHHhhcccEEEEeeC---CeEEEecCceEEEEEeCCC--CCCCCCCCCcchhcCCChh
Q 005024 432 -ADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKA---GITTSLNARTAVLSAANPA--WGRYDLRRTPAENINLPPA 505 (718)
Q Consensus 432 -a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~---g~~~~l~~~~~viaa~Np~--~g~~~~~~~~~~~~~l~~~ 505 (718)
+.+++++||||++++++.++.|+++|+++.+++... +.....+.++++|+|+||. .|.+ .++++
T Consensus 103 ~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~----------~l~~a 172 (262)
T TIGR02640 103 VREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH----------ETQDA 172 (262)
T ss_pred HHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee----------cccHH
Confidence 478999999999999999999999999999888632 2345677899999999987 3555 68999
Q ss_pred hhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhH
Q 005024 506 LLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQ 585 (718)
Q Consensus 506 ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~ 585 (718)
|++|| . .+..++|+.+.+.+|... .. .++++..+.+.+.+..+|.
T Consensus 173 L~~R~-~-~i~i~~P~~~~e~~Il~~-------------------------------~~--~~~~~~~~~iv~~~~~~R~ 217 (262)
T TIGR02640 173 LLDRL-I-TIFMDYPDIDTETAILRA-------------------------------KT--DVAEDSAATIVRLVREFRA 217 (262)
T ss_pred HHhhc-E-EEECCCCCHHHHHHHHHH-------------------------------hh--CCCHHHHHHHHHHHHHHHh
Confidence 99998 3 344478877666555221 11 3577888889999999993
Q ss_pred hhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 586 EEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 586 ~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
.. .....++|++..+.|.+.+++ .+..|+++|+.....-+..
T Consensus 218 ~~-----~~~~~~~r~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 218 SG-----DEITSGLRASLMIAEVATQQD---IPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred hC-----CccCCcHHHHHHHHHHHHHcC---CCCCCCcHHHHHHHHHHhc
Confidence 21 123445899888887776664 7999999999987655443
No 40
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.82 E-value=6.8e-19 Score=187.66 Aligned_cols=284 Identities=20% Similarity=0.211 Sum_probs=191.2
Q ss_pred CcccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceeeE
Q 005024 336 PEIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAAV 413 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~~ 413 (718)
.+++|++.++..+...+..... ..... |+||+||||||||++|+++++.+...+.. .+.....
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~--------~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------- 89 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALD--------HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------- 89 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCC--------cEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-------
Confidence 4789999999888766643211 01111 89999999999999999999998654322 1110000
Q ss_pred eecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEe--eCCeEEE---ecCceEEEEEeCCCCC
Q 005024 414 QRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIA--KAGITTS---LNARTAVLSAANPAWG 488 (718)
Q Consensus 414 ~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~--k~g~~~~---l~~~~~viaa~Np~~g 488 (718)
.+. +..-.-.+..++++|||||+.++...+..|..+|++..+.+. .+..... .-.++.+|+|+|+..
T Consensus 90 -----~~~--l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~- 161 (328)
T PRK00080 90 -----PGD--LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG- 161 (328)
T ss_pred -----hHH--HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc-
Confidence 000 000000124578999999999999888889999998765432 1111111 113588899999875
Q ss_pred CCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCC
Q 005024 489 RYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPC 567 (718)
Q Consensus 489 ~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ 567 (718)
.++++|.+||++.+. +.+++.+.+.+++..... ....
T Consensus 162 ------------~l~~~L~sRf~~~~~------------------------------l~~~~~~e~~~il~~~~~~~~~~ 199 (328)
T PRK00080 162 ------------LLTSPLRDRFGIVQR------------------------------LEFYTVEELEKIVKRSARILGVE 199 (328)
T ss_pred ------------cCCHHHHHhcCeeee------------------------------cCCCCHHHHHHHHHHHHHHcCCC
Confidence 688999999977653 345666677777765433 4557
Q ss_pred CCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccccccccccc
Q 005024 568 VPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQR 647 (718)
Q Consensus 568 ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~ 647 (718)
+++++.+.|... ..+++|.+..+++.+...|.......|+.+++..++..+......
T Consensus 200 ~~~~~~~~ia~~---------------~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~-------- 256 (328)
T PRK00080 200 IDEEGALEIARR---------------SRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGVDELG-------- 256 (328)
T ss_pred cCHHHHHHHHHH---------------cCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcCC--------
Confidence 899999999875 568899999999988888877777789999999998654222111
Q ss_pred CccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHH-HHHhcCeEEEeCCeeEEE
Q 005024 648 SGLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLE-EYAALNVWQIHPHTFDIR 714 (718)
Q Consensus 648 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g~i~~~~~~~~i~ 714 (718)
.+.. -...++.+.....+..++.+++ |..+|.+..++++.++ .|.+.|++..++.|+.+|
T Consensus 257 --l~~~--~~~~l~~~~~~~~~~~~~~~~~---a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr~~~ 317 (328)
T PRK00080 257 --LDEM--DRKYLRTIIEKFGGGPVGLDTL---AAALGEERDTIEDVYEPYLIQQGFIQRTPRGRVAT 317 (328)
T ss_pred --CCHH--HHHHHHHHHHHcCCCceeHHHH---HHHHCCCcchHHHHhhHHHHHcCCcccCCchHHHH
Confidence 1111 1222333333333334666665 6678999999999999 999999999888776543
No 41
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.82 E-value=5.9e-19 Score=198.19 Aligned_cols=249 Identities=22% Similarity=0.304 Sum_probs=172.1
Q ss_pred hHHHHHHHHHhhChhHHHHHHhhcCC----cccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHH
Q 005024 311 GDEEEHISRLAEDGDIYNKLARSLAP----EIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLL 386 (718)
Q Consensus 311 ~~~~~~i~~~~~~~~~~~~l~~si~p----~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la 386 (718)
.++.++++++.. -.+-+.+.+...| +++|++...+++..++++.... |+||+||||||||++|
T Consensus 37 ~~~~~~~~~~~~-~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~------------~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 37 KKELEKLNKMRA-IRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQ------------HVIIYGPPGVGKTAAA 103 (531)
T ss_pred hHHHHHHHHhhh-hhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCc------------eEEEECCCCCCHHHHH
Confidence 344555555532 2234455555666 7999999999888877765422 9999999999999999
Q ss_pred HHHHHHCCC----------ceeecCCC---CCCCcceeeEe---ecc---------cccceeeecceEeeecCCeeeecc
Q 005024 387 KHIINVAPR----------GVYTTGRG---SSGVGLTAAVQ---RDN---------VTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 387 ~~i~~~~~~----------~~~~~~~~---~~~~~l~~~~~---~~~---------~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
+++++.+.+ .++..... ....++..... .++ ..|.....+|.+..|++|++||||
T Consensus 104 r~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdE 183 (531)
T TIGR02902 104 RLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDE 183 (531)
T ss_pred HHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEec
Confidence 999875321 11211110 00011110000 011 112223457888899999999999
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeC---Ce------------EEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhh
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKA---GI------------TTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPAL 506 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~---g~------------~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~l 506 (718)
++.|++..|+.|+++||++.+.+..+ +. ...+++++++|+||+.... .+++++
T Consensus 184 I~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~------------~L~paL 251 (531)
T TIGR02902 184 IGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE------------EIPPAL 251 (531)
T ss_pred hhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc------------cCChHH
Confidence 99999999999999999988766411 00 1346788999988775532 689999
Q ss_pred hcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhH
Q 005024 507 LSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQ 585 (718)
Q Consensus 507 l~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~ 585 (718)
.+||..++ +++++.+++..++.... +....+++++.+.|..|
T Consensus 252 rsR~~~I~-------------------------------f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y------ 294 (531)
T TIGR02902 252 RSRCVEIF-------------------------------FRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKY------ 294 (531)
T ss_pred hhhhheee-------------------------------CCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh------
Confidence 99995543 34555666666666543 35567999999988775
Q ss_pred hhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 586 EEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 586 ~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
.| +.|++.++++.|...|..+.+..|+.+|+..++.
T Consensus 295 --------~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 295 --------AS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred --------hh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 24 6799999999999899888888999999999985
No 42
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.82 E-value=1.6e-18 Score=178.83 Aligned_cols=222 Identities=14% Similarity=0.125 Sum_probs=149.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee--cCCCCCCCcceeeEeec--ccccceeeecceEeee--cCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT--TGRGSSGVGLTAAVQRD--NVTNEMVLEGGALVLA--DMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~--~~~~~~~~~l~~~~~~~--~~~g~~~~~~g~l~~a--~~gil~iDEi~~ 444 (718)
||||.|+||||||++++.+++.+...++. .....+..++.+..... ...+.+.+..|.+..| +++++++||||.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~ 145 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDA 145 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhc
Confidence 89999999999999999999999777654 23333333455543221 1122356788888765 577899999999
Q ss_pred CChHHHHHHHHhhc-ccEEEEeeCCeEEEecCceEEEEEeCCCC-CCCCCCCCcchhcCCChhhhcccceEEEeccCCCh
Q 005024 445 MDESDRTAIHEVME-QQTVSIAKAGITTSLNARTAVLSAANPAW-GRYDLRRTPAENINLPPALLSRFDLLWLILDRADM 522 (718)
Q Consensus 445 ~~~~~~~~L~~~me-~~~i~i~k~g~~~~l~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~ 522 (718)
++++.+..|+++|| .+.+++...+.....+..|++|||+||.. | |..--+.....+++++++|| ++.+-.++|+.
T Consensus 146 a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G--d~~G~y~Gt~~l~~A~lDRF-~i~~~~~Yp~~ 222 (327)
T TIGR01650 146 GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG--DTTGLYHGTQQINQAQMDRW-SIVTTLNYLEH 222 (327)
T ss_pred cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC--CCCcceeeeecCCHHHHhhe-eeEeeCCCCCH
Confidence 99999999999999 46888875555555566899999999963 1 00001122228999999999 44444599998
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTL 602 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l 602 (718)
+.+.+|...... ......++++.+++++.....|+.. .........|+|.+
T Consensus 223 e~E~~Il~~~~~----------------------------~~~~~~~~~i~~~mV~la~~tR~~~-~~~~i~~~~SpR~l 273 (327)
T TIGR01650 223 DNEAAIVLAKAK----------------------------GFDDTEGKDIINAMVRVADMTRNAF-INGDISTVMSPRTV 273 (327)
T ss_pred HHHHHHHHhhcc----------------------------CCCccchHHHHHHHHHHHHHHHhhh-ccCCccccccHHHH
Confidence 888777433110 0000113456666667666677632 12245678999999
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Q 005024 603 LSILRISAALARLRFSETVAQSDVDEALRLMQ 634 (718)
Q Consensus 603 ~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~ 634 (718)
..|.+.+... . .|+..|.++..
T Consensus 274 i~w~~~~~~f-----~-----~~~~~a~~~~~ 295 (327)
T TIGR01650 274 ITWAENAEIF-----D-----HDIALAFRLTF 295 (327)
T ss_pred HHHHHHHHhh-----C-----ccHHHHHHHHH
Confidence 9999876543 1 25666666543
No 43
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.81 E-value=4.4e-19 Score=199.45 Aligned_cols=272 Identities=16% Similarity=0.136 Sum_probs=170.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---eee--cCCCCCCCcceeeEeec----ccccceeeecceEeeecCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VYT--TGRGSSGVGLTAAVQRD----NVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~~--~~~~~~~~~l~~~~~~~----~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
+|||.|++||||+.+|+++|..+++. +.. |...+. .+..+.... .++|......|.+..|++|++||||
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~--~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~Lde 306 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD--DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDE 306 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH--HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeC
Confidence 89999999999999999999988654 121 322221 111111111 1223223456778889999999999
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCC
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRAD 521 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~ 521 (718)
|+.|++..|..|+++++++.+... |.....+.+++||+|++..... +.+.-.+.+.|+.|+....+-.++..
T Consensus 307 I~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~vRiI~st~~~l~~------l~~~g~f~~dL~~rL~~~~i~lPpLr 378 (520)
T PRK10820 307 IGEMSPRMQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICATQKNLVE------LVQKGEFREDLYYRLNVLTLNLPPLR 378 (520)
T ss_pred hhhCCHHHHHHHHHHHhcCCcccC--CCCcceeeeeEEEEecCCCHHH------HHHcCCccHHHHhhcCeeEEeCCCcc
Confidence 999999999999999999877554 6666667789999999876200 01111456778888765444322222
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
.. .++++++...+++++........|.+++++.+.|..| +||+|+|+
T Consensus 379 eR-------------------~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y--------------~WPGNvre 425 (520)
T PRK10820 379 DR-------------------PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY--------------GWPGNVRQ 425 (520)
T ss_pred cC-------------------hhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcC--------------CCCCHHHH
Confidence 11 1233344555666543322223568999999999886 79999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccCccchH-HHHHHHHHHHHHhcCCCcccHHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAI-SDIYSILRDEAARSNKLDVSYAHALNW 680 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~~~~~~~~~~~~~l~~~ 680 (718)
|++++..|...+ ....|+.+|+. +.-..... .........+..+.+ +...++|.+++..+++ ..++
T Consensus 426 L~nvl~~a~~~~---~~~~i~~~~~~--l~~~~~~~-~~~~~~~~~~L~~~~~~~E~~~i~~~l~~~~~-------~~~a 492 (520)
T PRK10820 426 LKNAIYRALTQL---EGYELRPQDIL--LPDYDAAV-AVGEDAMEGSLDEITSRFERSVLTRLYRNYPS-------TRKL 492 (520)
T ss_pred HHHHHHHHHHhC---CCCcccHHHcC--Cccccccc-ccccccccCCHHHHHHHHHHHHHHHHHHHCCC-------HHHH
Confidence 999999876655 45678888863 11000000 000000000101111 2233456665555442 4578
Q ss_pred HHHcCCCHHHHHHHHHHH
Q 005024 681 ISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 681 ~~~~g~~~~~~~~~l~~l 698 (718)
|+.+|+++++++++|++|
T Consensus 493 A~~LGisr~tL~rkl~~~ 510 (520)
T PRK10820 493 AKRLGVSHTAIANKLREY 510 (520)
T ss_pred HHHhCCCHHHHHHHHHHc
Confidence 999999999999999887
No 44
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.80 E-value=1.2e-18 Score=197.80 Aligned_cols=300 Identities=16% Similarity=0.135 Sum_probs=187.4
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---eee--cCCCCCCCcce
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---VYT--TGRGSSGVGLT 410 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~~~--~~~~~~~~~l~ 410 (718)
..++|....-+.+...+..-. +.+.+|||.|++||||+.+|++||..+++. +.. |+..+. .+.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~--~~~ 263 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE--TLL 263 (534)
T ss_pred CceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH--HHH
Confidence 367787765444443321110 112289999999999999999999998643 222 333221 111
Q ss_pred eeEe----ecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 411 AAVQ----RDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 411 ~~~~----~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
.+.. +..++|......|.+..|++|++||||++.|+...|..|+++++++.+... |.....+.++++|+|+|..
T Consensus 264 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERV--GGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEEC--CCCceEeecEEEEEeCCCC
Confidence 1111 122334334457888899999999999999999999999999999887654 5556677889999999976
Q ss_pred CCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 005024 487 WGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSP 566 (718)
Q Consensus 487 ~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p 566 (718)
... ....-.+.+.|+.|++.+.+..++... ..++++.+...++.++..... ..+
T Consensus 342 l~~------~~~~~~f~~~L~~rl~~~~i~lPpLre-------------------R~eDi~~L~~~~l~~~~~~~~-~~~ 395 (534)
T TIGR01817 342 LEE------AVAKGEFRADLYYRINVVPIFLPPLRE-------------------RREDIPLLAEAFLEKFNRENG-RPL 395 (534)
T ss_pred HHH------HHHcCCCCHHHHHHhcCCeeeCCCccc-------------------ccccHHHHHHHHHHHHHHHcC-CCC
Confidence 210 011115677888888665443222211 112334444555555432111 236
Q ss_pred CCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh-----h-----
Q 005024 567 CVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM-----S----- 636 (718)
Q Consensus 567 ~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~-----~----- 636 (718)
.+++++.+.|..| .||+|+|+|+++++.+...+ ....|+.+|+...+..... .
T Consensus 396 ~~s~~a~~~L~~~--------------~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~ 458 (534)
T TIGR01817 396 TITPSAIRVLMSC--------------KWPGNVRELENCLERTATLS---RSGTITRSDFSCQSGQCLSPMLAKTCPHGH 458 (534)
T ss_pred CCCHHHHHHHHhC--------------CCCChHHHHHHHHHHHHHhC---CCCcccHHHCchhhcccccccccccccccc
Confidence 7999999999987 69999999999999876655 4568999998632210000 0
Q ss_pred --ccccc--c---cc----cccC--ccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005024 637 --KFSLY--S---DD----RQRS--GLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 637 --~~~~~--~---~~----~~~~--~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 698 (718)
..... . .. .+.. .........+.|...+..++++ +.++|+.+|+++++++++|++|
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Er~~i~~aL~~~~gn------~~~aA~~LGisr~tLy~klk~~ 527 (534)
T TIGR01817 459 ISIDPLAGTTPPHSPASAALPGEPGLSGPTLSERERLIAALEQAGWV------QAKAARLLGMTPRQVGYALRKL 527 (534)
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhCCC------HHHHHHHHCCCHHHHHHHHHHc
Confidence 00000 0 00 0000 0111122344577777777755 6789999999999999998876
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.79 E-value=7.5e-18 Score=178.38 Aligned_cols=285 Identities=19% Similarity=0.193 Sum_probs=185.4
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
.+++|++.++..+..++.+...... ..-|++|+||||||||++|+++++.+............ . ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~-------~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~----~---~~ 69 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQE-------ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL----E---KP 69 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCC-------CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchh----c---Cc
Confidence 4688999999888776643211000 11189999999999999999999987544322111000 0 00
Q ss_pred cccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEe-eCCe----EEEecCceEEEEEeCCCCCCC
Q 005024 416 DNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIA-KAGI----TTSLNARTAVLSAANPAWGRY 490 (718)
Q Consensus 416 ~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~-k~g~----~~~l~~~~~viaa~Np~~g~~ 490 (718)
....+. +. .+..++++||||++.++++.+..|+.+|+.....+. .++. .......+.+|+++|...
T Consensus 70 ~~l~~~--l~----~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~--- 140 (305)
T TIGR00635 70 GDLAAI--LT----NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG--- 140 (305)
T ss_pred hhHHHH--HH----hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc---
Confidence 000000 00 123467999999999999999999999987654432 1111 111123477888888764
Q ss_pred CCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCC
Q 005024 491 DLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVP 569 (718)
Q Consensus 491 ~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls 569 (718)
.+++++.|||.+++.+ .+++.+.+++++..... ....++
T Consensus 141 ----------~l~~~l~sR~~~~~~l------------------------------~~l~~~e~~~il~~~~~~~~~~~~ 180 (305)
T TIGR00635 141 ----------MLTSPLRDRFGIILRL------------------------------EFYTVEELAEIVSRSAGLLNVEIE 180 (305)
T ss_pred ----------ccCHHHHhhcceEEEe------------------------------CCCCHHHHHHHHHHHHHHhCCCcC
Confidence 6889999999776543 44566666666665433 445789
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccCc
Q 005024 570 RELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSG 649 (718)
Q Consensus 570 ~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~ 649 (718)
+++.+.|.+. ..+++|.+..+++.+...|.......|+.+++..++..+..... ..
T Consensus 181 ~~al~~ia~~---------------~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~~~-------~l-- 236 (305)
T TIGR00635 181 PEAALEIARR---------------SRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMIDEL-------GL-- 236 (305)
T ss_pred HHHHHHHHHH---------------hCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCCC-------CC--
Confidence 9999988875 46788999999998877887767778999999999876322110 00
Q ss_pred cchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHH-HHHhcCeEEEeCCeeEE
Q 005024 650 LDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLE-EYAALNVWQIHPHTFDI 713 (718)
Q Consensus 650 ~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g~i~~~~~~~~i 713 (718)
......++.++.... .+..++ +.+.|..+|.++.++...++ .|.+.|++..++.|+..
T Consensus 237 ~~~~~~~L~al~~~~---~~~~~~---~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~~ 295 (305)
T TIGR00635 237 DEIDRKLLSVLIEQF---QGGPVG---LKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRIA 295 (305)
T ss_pred CHHHHHHHHHHHHHh---CCCccc---HHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhhh
Confidence 111122333332222 222343 45667788999999999999 69999999877776543
No 46
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.78 E-value=3.1e-18 Score=191.13 Aligned_cols=269 Identities=13% Similarity=0.121 Sum_probs=175.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---ee--ecCCCCCCCcceeeEe----ecccccceeeecceEeeecCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VY--TTGRGSSGVGLTAAVQ----RDNVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~--~~~~~~~~~~l~~~~~----~~~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
++++.|++||||+.+|++++..+++. ++ .|+..+. .+..+.. +..++|......|.+..|++|++||||
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE--NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh--HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEec
Confidence 89999999999999999999988643 22 2333211 1111111 122344445567889999999999999
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCC
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRAD 521 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~ 521 (718)
++.|+...|..|+++++++.+... |.....+.++++|+|+|..... ....-.+.+.|+.|+....+- .|.
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~~~--~~~~~~~~~~rii~~~~~~l~~------~~~~~~~~~~L~~~l~~~~i~--lPp 311 (445)
T TIGR02915 242 IGDLPLNLQAKLLRFLQERVIERL--GGREEIPVDVRIVCATNQDLKR------MIAEGTFREDLFYRIAEISIT--IPP 311 (445)
T ss_pred hhhCCHHHHHHHHHHHhhCeEEeC--CCCceeeeceEEEEecCCCHHH------HHHcCCccHHHHHHhccceec--CCC
Confidence 999999999999999999987654 6666778899999999987200 000114566677777544432 222
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
..+ ..++++.+...+++++........+.+++++.+.|..| +||+|+|+
T Consensus 312 Lr~-----------------R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--------------~wpgNvre 360 (445)
T TIGR02915 312 LRS-----------------RDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH--------------AWPGNVRE 360 (445)
T ss_pred chh-----------------chhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC--------------CCCChHHH
Confidence 111 11233445555566543322222357999999999987 79999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccCccchH-HHHHHHHHHHHHhcCCCcccHHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAI-SDIYSILRDEAARSNKLDVSYAHALNW 680 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~~~~~~~~~~~~~l~~~ 680 (718)
|+++++.|...| ....|+.+|+.. . .. .... ........... +...+.|...+..++++ ..++
T Consensus 361 L~~~i~~a~~~~---~~~~i~~~~l~~--~---~~-~~~~-~~~~~~l~~~~~~~E~~~i~~al~~~~gn------~~~a 424 (445)
T TIGR02915 361 LENKVKRAVIMA---EGNQITAEDLGL--D---AR-ERAE-TPLEVNLREVRERAEREAVRKAIARVDGN------IARA 424 (445)
T ss_pred HHHHHHHHHHhC---CCCcccHHHcCC--c---cc-cccc-cccccCHHHHHHHHHHHHHHHHHHHhCCC------HHHH
Confidence 999999887665 456788888641 0 00 0000 00000100111 22335677777777655 6788
Q ss_pred HHHcCCCHHHHHHHHHHH
Q 005024 681 ISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 681 ~~~~g~~~~~~~~~l~~l 698 (718)
|+.+|+++++++++|++|
T Consensus 425 A~~Lgisr~tl~rkl~~~ 442 (445)
T TIGR02915 425 AELLGITRPTLYDLMKKH 442 (445)
T ss_pred HHHhCCCHHHHHHHHHHh
Confidence 999999999999999877
No 47
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.78 E-value=1.2e-18 Score=183.73 Aligned_cols=198 Identities=14% Similarity=0.156 Sum_probs=144.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc------eeecCCCCCCC---cceeeEeecccccceeeecceEeeecCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG------VYTTGRGSSGV---GLTAAVQRDNVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~------~~~~~~~~~~~---~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
|||+.|++||||+.+|+.||..+.+. .+.|+..+... .|++ ..+..++|...-++|.+..|+||++|+||
T Consensus 103 ~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG-~~kGaftGa~~~k~Glfe~A~GGtLfLDE 181 (403)
T COG1221 103 PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFG-HEKGAFTGAQGGKAGLFEQANGGTLFLDE 181 (403)
T ss_pred cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhc-cccceeecccCCcCchheecCCCEEehhh
Confidence 99999999999999999999888662 33355444321 1222 23445678777889999999999999999
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCC--hhhhcccceEEEeccC
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLP--PALLSRFDLLWLILDR 519 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~--~~ll~Rfdli~~~~d~ 519 (718)
|..||+..|..|+++||+|++... |.....+.++++|+|+|-.-++ .+- ..|++|.-...+ ..
T Consensus 182 I~~LP~~~Q~kLl~~le~g~~~rv--G~~~~~~~dVRli~AT~~~l~~-----------~~~~g~dl~~rl~~~~I--~L 246 (403)
T COG1221 182 IHRLPPEGQEKLLRVLEEGEYRRV--GGSQPRPVDVRLICATTEDLEE-----------AVLAGADLTRRLNILTI--TL 246 (403)
T ss_pred hhhCCHhHHHHHHHHHHcCceEec--CCCCCcCCCceeeeccccCHHH-----------HHHhhcchhhhhcCcee--cC
Confidence 999999999999999999999876 7788889999999999966321 122 255553322222 33
Q ss_pred CChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCH
Q 005024 520 ADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTV 599 (718)
Q Consensus 520 ~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~ 599 (718)
|...+. ..++.++...+++.+........+..++++...+..| +||||+
T Consensus 247 PpLrER-----------------~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y--------------~~pGNi 295 (403)
T COG1221 247 PPLRER-----------------KEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAY--------------DWPGNI 295 (403)
T ss_pred CChhhc-----------------hhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC--------------CCCCcH
Confidence 333222 1234445666777665544333445667899998887 699999
Q ss_pred HHHHHHHHHHHHHHHh
Q 005024 600 RTLLSILRISAALARL 615 (718)
Q Consensus 600 R~l~~lirla~a~A~l 615 (718)
|+|+++++.+.+.+..
T Consensus 296 rELkN~Ve~~~~~~~~ 311 (403)
T COG1221 296 RELKNLVERAVAQASG 311 (403)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998853
No 48
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.78 E-value=4.2e-18 Score=191.35 Aligned_cols=276 Identities=15% Similarity=0.136 Sum_probs=178.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---ee--ecCCCCCCCcceeeEe----ecccccceeeecceEeeecCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VY--TTGRGSSGVGLTAAVQ----RDNVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~--~~~~~~~~~~l~~~~~----~~~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
+||+.|++||||+.+|+++|..+++. +. .|+.... .+..+.. +..++|......|.+..|++|++||||
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~--~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK--DLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH--HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEec
Confidence 89999999999999999999998653 12 2322211 1111111 112344445567889999999999999
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCC
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRAD 521 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~ 521 (718)
++.|+...|..|+++++++.+... |.....+.++++|+|++..... ..++-.+.+.|+.|+..+.+-.++..
T Consensus 241 i~~l~~~~q~~L~~~l~~~~~~~~--~~~~~~~~~~rii~~~~~~l~~------~~~~~~~~~~L~~~l~~~~i~~PpLr 312 (469)
T PRK10923 241 IGDMPLDVQTRLLRVLADGQFYRV--GGYAPVKVDVRIIAATHQNLEQ------RVQEGKFREDLFHRLNVIRVHLPPLR 312 (469)
T ss_pred cccCCHHHHHHHHHHHhcCcEEeC--CCCCeEEeeEEEEEeCCCCHHH------HHHcCCchHHHHHHhcceeecCCCcc
Confidence 999999999999999999887765 5555666789999999976200 01111567888888865544322221
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
. ..++++.+...+++++........+.+++++.+.|..| .||+|+|+
T Consensus 313 e-------------------R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--------------~wpgNv~e 359 (469)
T PRK10923 313 E-------------------RREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL--------------AWPGNVRQ 359 (469)
T ss_pred c-------------------chhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC--------------CCCChHHH
Confidence 1 11233334445555542211112346999999999987 79999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccc--ccc----------------ccccCccchH-HHHHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSL--YSD----------------DRQRSGLDAI-SDIYSILRD 662 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~--~~~----------------~~~~~~~~~~-~~i~~~i~~ 662 (718)
|+++++.+...+ ....|+.+|+...+.......... ... .........+ ....++|..
T Consensus 360 L~~~i~~~~~~~---~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~E~~~i~~ 436 (469)
T PRK10923 360 LENTCRWLTVMA---AGQEVLIQDLPGELFESTVPESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTT 436 (469)
T ss_pred HHHHHHHHHHhC---CCCcccHHHCcHhhhccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHH
Confidence 999999887766 466899999865442110000000 000 0000000111 223345777
Q ss_pred HHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005024 663 EAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 663 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 698 (718)
.+..++++ ..++|+.+||++++++++|++|
T Consensus 437 aL~~~~gn------~~~aA~~Lgisr~tL~rkl~~~ 466 (469)
T PRK10923 437 ALRHTQGH------KQEAARLLGWGRNTLTRKLKEL 466 (469)
T ss_pred HHHHhCCC------HHHHHHHhCCCHHHHHHHHHHh
Confidence 77777755 6788999999999999999987
No 49
>PRK15115 response regulator GlrR; Provisional
Probab=99.78 E-value=6.5e-18 Score=188.49 Aligned_cols=269 Identities=16% Similarity=0.168 Sum_probs=175.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---ee--ecCCCCCC---CcceeeEeecccccceeeecceEeeecCCeeeeccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VY--TTGRGSSG---VGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEF 442 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~--~~~~~~~~---~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi 442 (718)
++++.|++||||+.+|++++..+++. +. .|+..+.. ..+++. .+..++|......|.+..+++|++||||+
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~~i 237 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGH-ARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCC-CcCCCCCCccCCCCcEEECCCCEEEEEcc
Confidence 89999999999999999999998643 22 23322110 011111 12233455556778999999999999999
Q ss_pred ccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCCh
Q 005024 443 DKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADM 522 (718)
Q Consensus 443 ~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~ 522 (718)
+.|+.+.|..|+++++++.+... |.....+.++++|+|++..-. .....-.+.+.|+.|+..+.+- .|..
T Consensus 238 ~~l~~~~q~~L~~~l~~~~~~~~--g~~~~~~~~~rii~~~~~~l~------~~~~~~~f~~~l~~~l~~~~i~--lPpL 307 (444)
T PRK15115 238 GDMPAPLQVKLLRVLQERKVRPL--GSNRDIDIDVRIISATHRDLP------KAMARGEFREDLYYRLNVVSLK--IPAL 307 (444)
T ss_pred ccCCHHHHHHHHHHHhhCCEEeC--CCCceeeeeEEEEEeCCCCHH------HHHHcCCccHHHHHhhceeeec--CCCh
Confidence 99999999999999999887544 666667789999999996510 0001114566666666554332 2221
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTL 602 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l 602 (718)
.+ ..++++.+...+++++........+.+++++.+.|..| .||+|+|+|
T Consensus 308 r~-----------------R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--------------~WpgNvreL 356 (444)
T PRK15115 308 AE-----------------RTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA--------------SWPGNVRQL 356 (444)
T ss_pred Hh-----------------ccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--------------CCCChHHHH
Confidence 11 11233334444555542211112336999999999987 799999999
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 005024 603 LSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWIS 682 (718)
Q Consensus 603 ~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~ 682 (718)
+++++.+...+ ....|+.+|+...+.- . .................+|...+..++++ ..++|+
T Consensus 357 ~~~i~~~~~~~---~~~~i~~~~l~~~~~~---~-----~~~~~~~~~~~~~~E~~~i~~al~~~~gn------~~~aA~ 419 (444)
T PRK15115 357 VNVIEQCVALT---SSPVISDALVEQALEG---E-----NTALPTFVEARNQFELNYLRKLLQITKGN------VTHAAR 419 (444)
T ss_pred HHHHHHHHHhC---CCCccChhhhhhhhcc---c-----ccccccHHHHHHHHHHHHHHHHHHHhCCC------HHHHHH
Confidence 99999876655 4567898888654321 0 00000000011122345677777777655 678899
Q ss_pred HcCCCHHHHHHHHHHH
Q 005024 683 RKGYSEAQLKECLEEY 698 (718)
Q Consensus 683 ~~g~~~~~~~~~l~~l 698 (718)
.+||+++++|++|++|
T Consensus 420 ~Lgisr~tL~rkl~~~ 435 (444)
T PRK15115 420 MAGRNRTEFYKLLSRH 435 (444)
T ss_pred HhCCCHHHHHHHHHHh
Confidence 9999999999999987
No 50
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.77 E-value=7.4e-18 Score=188.86 Aligned_cols=276 Identities=14% Similarity=0.147 Sum_probs=176.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---eee--cCCCCCCCcceeeEe----ecccccceeeecceEeeecCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VYT--TGRGSSGVGLTAAVQ----RDNVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~~--~~~~~~~~~l~~~~~----~~~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
++|+.|++||||+.+|++++..+++. ++. |...+. ++..+.. ...++|......|.+..|++|++||||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE--SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH--HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEec
Confidence 89999999999999999999987643 222 322211 1111111 122344445567899999999999999
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCC
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRAD 521 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~ 521 (718)
++.|+...|..|+++++++.+... |.....+.++++|+|+|..... +...-.+.+.|+.|+..+.+. .|.
T Consensus 246 i~~l~~~~q~~L~~~l~~~~~~~~--~~~~~~~~~~rii~~t~~~l~~------~~~~g~~~~~l~~~l~~~~i~--~pp 315 (457)
T PRK11361 246 IGEMPLVLQAKLLRILQEREFERI--GGHQTIKVDIRIIAATNRDLQA------MVKEGTFREDLFYRLNVIHLI--LPP 315 (457)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeC--CCCceeeeceEEEEeCCCCHHH------HHHcCCchHHHHHHhccceec--CCC
Confidence 999999999999999999877654 6666778899999999977200 001114556677777554332 222
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
..+ ..++++.+...++.++-.......+.+++++.+.|..| .||+|+|+
T Consensus 316 Lre-----------------R~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--------------~wpgNv~e 364 (457)
T PRK11361 316 LRD-----------------RREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW--------------SWPGNIRE 364 (457)
T ss_pred hhh-----------------chhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC--------------CCCCcHHH
Confidence 111 11223334444555543221122357999999999987 79999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccc-cCccchH-HHHHHHHHHHHHhcCCCcccHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQ-RSGLDAI-SDIYSILRDEAARSNKLDVSYAHALN 679 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~-~~~~~~~-~~i~~~i~~~~~~~~~~~~~~~~l~~ 679 (718)
|+++++.+...+ ....|+.+|+...+..-............. ......+ +....+|...+..++++ ..+
T Consensus 365 L~~~~~~~~~~~---~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~E~~~i~~al~~~~gn------~~~ 435 (457)
T PRK11361 365 LSNVIERAVVMN---SGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGN------RTR 435 (457)
T ss_pred HHHHHHHHHHhC---CCCcccHHHChHhhhcccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCC------HHH
Confidence 999999876655 456799999875442110000000000000 0001111 22345677777777654 678
Q ss_pred HHHHcCCCHHHHHHHHHHH
Q 005024 680 WISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 680 ~~~~~g~~~~~~~~~l~~l 698 (718)
+|+.+||++++++++|++|
T Consensus 436 aA~~LGisr~tL~rkl~~~ 454 (457)
T PRK11361 436 TALMLGISRRALMYKLQEY 454 (457)
T ss_pred HHHHHCCCHHHHHHHHHHh
Confidence 8999999999999999887
No 51
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.77 E-value=9.6e-18 Score=195.80 Aligned_cols=296 Identities=16% Similarity=0.182 Sum_probs=180.1
Q ss_pred cccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---e--eecCCCCCCCccee
Q 005024 337 EIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---V--YTTGRGSSGVGLTA 411 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~--~~~~~~~~~~~l~~ 411 (718)
.++|.....+.+...+..-- +++.+|||+|++|||||.+|++++..+++. + +.|...+. ++..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~--~~~~ 444 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA--GLLE 444 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh--hHhh
Confidence 68888776655543322100 112289999999999999999999988643 2 22333221 1111
Q ss_pred eEe----ecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCC
Q 005024 412 AVQ----RDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAW 487 (718)
Q Consensus 412 ~~~----~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~ 487 (718)
... +..++|......|.+..|++|++|||||+.++.+.|..|+++++++.+... |.....+.++++|+|+|..-
T Consensus 445 ~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~t~~~l 522 (686)
T PRK15429 445 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERL--GSNKIIQTDVRLIAATNRDL 522 (686)
T ss_pred hhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeC--CCCCcccceEEEEEeCCCCH
Confidence 111 112233333455778889999999999999999999999999999877665 66666778999999999762
Q ss_pred CCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 005024 488 GRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPC 567 (718)
Q Consensus 488 g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ 567 (718)
.. ....-.+...|+.|+...-+- .|...+. .++++.+...++.++.....+..+.
T Consensus 523 ~~------~~~~~~f~~~L~~~l~~~~i~--lPpLreR-----------------~~Di~~L~~~~l~~~~~~~~~~~~~ 577 (686)
T PRK15429 523 KK------MVADREFRSDLYYRLNVFPIH--LPPLRER-----------------PEDIPLLVKAFTFKIARRMGRNIDS 577 (686)
T ss_pred HH------HHHcCcccHHHHhccCeeEEe--CCChhhh-----------------HhHHHHHHHHHHHHHHHHcCCCCCC
Confidence 10 011114667777777665443 2222111 1223334444555543322222346
Q ss_pred CCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccccccccccc
Q 005024 568 VPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQR 647 (718)
Q Consensus 568 ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~ 647 (718)
+++++.+.|..| .||+|+|+|+++++.+...+ ....++.+ +.... ...... .....
T Consensus 578 ~s~~al~~L~~y--------------~WPGNvrEL~~~i~~a~~~~---~~~~i~~~-l~~~~-~~~~~~-----~~~~~ 633 (686)
T PRK15429 578 IPAETLRTLSNM--------------EWPGNVRELENVIERAVLLT---RGNVLQLS-LPDIT-LPEPET-----PPAAT 633 (686)
T ss_pred cCHHHHHHHHhC--------------CCCCcHHHHHHHHHHHHHhC---CCCccccc-Cchhh-cccccc-----ccccc
Confidence 999999999887 79999999999999887665 34455542 22111 000000 00000
Q ss_pred CccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005024 648 SGLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 648 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 698 (718)
......+...++|...+..++++ .+ + =.++|+.+|+++++++++|++|
T Consensus 634 ~~~~~~~~Er~~I~~aL~~~~gn-~~-~-~~~aA~~LGi~R~tL~rklk~~ 681 (686)
T PRK15429 634 VVAQEGEDEYQLIVRVLKETNGV-VA-G-PKGAAQRLGLKRTTLLSRMKRL 681 (686)
T ss_pred ccccHHHHHHHHHHHHHHHcCCC-cc-c-HHHHHHHhCCCHHHHHHHHHHc
Confidence 00111122345677777777654 10 0 0378899999999999998876
No 52
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.74 E-value=3.6e-17 Score=183.55 Aligned_cols=276 Identities=16% Similarity=0.147 Sum_probs=176.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---eee--cCCCCCCCcceeeE----eecccccceeeecceEeeecCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VYT--TGRGSSGVGLTAAV----QRDNVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~~--~~~~~~~~~l~~~~----~~~~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
++++.|++||||+++|++++..+++. ++. |+.... .+..+. .+..++|...-..|.+..|++|++||||
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK--DLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH--HHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 89999999999999999999988653 222 333211 111111 1222344444457889999999999999
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCC
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRAD 521 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~ 521 (718)
++.|+.+.|..|+++++++.+... |.....+.++++|+|+|..... ....-.+.+.|+.|+..+.+-.++..
T Consensus 237 i~~l~~~~q~~ll~~l~~~~~~~~--~~~~~~~~~~rii~~~~~~l~~------~~~~~~f~~~L~~rl~~~~i~lPpLr 308 (463)
T TIGR01818 237 IGDMPLDAQTRLLRVLADGEFYRV--GGRTPIKVDVRIVAATHQNLEA------LVRQGKFREDLFHRLNVIRIHLPPLR 308 (463)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEEC--CCCceeeeeeEEEEeCCCCHHH------HHHcCCcHHHHHHHhCcceecCCCcc
Confidence 999999999999999999987765 5556667789999999977210 00111456677777765433222211
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
. ..++++.+...+++++........+.+++++.+.|..| .||||+|+
T Consensus 309 ~-------------------R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--------------~wpgNvre 355 (463)
T TIGR01818 309 E-------------------RREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL--------------RWPGNVRQ 355 (463)
T ss_pred c-------------------chhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--------------CCCChHHH
Confidence 1 11223334444454432211112357999999999987 79999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccc-ccc-----------------c-cccCccchHHH-HHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSL-YSD-----------------D-RQRSGLDAISD-IYSILR 661 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~-~~~-----------------~-~~~~~~~~~~~-i~~~i~ 661 (718)
|+++++.+...| ....|+.+|+...+..-....... ... . ........++. ...+|.
T Consensus 356 L~~~~~~~~~~~---~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~E~~~i~ 432 (463)
T TIGR01818 356 LENLCRWLTVMA---SGDEVLVSDLPAELALTGRPASAPDSDGQDSWDEALEAWAKQALSRGEQGLLDRALPEFERPLLE 432 (463)
T ss_pred HHHHHHHHHHhC---CCCcccHHhchHHHhccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 999999887766 456899999876553210000000 000 0 00000001122 334577
Q ss_pred HHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005024 662 DEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEY 698 (718)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l 698 (718)
..+..++++ ..++|+.+||++++++++|++|
T Consensus 433 ~al~~~~gn------~~~aA~~Lgisr~tL~rkl~~~ 463 (463)
T TIGR01818 433 AALQHTRGH------KQEAAALLGWGRNTLTRKLKEL 463 (463)
T ss_pred HHHHHcCCC------HHHHHHHhCCCHHHHHHHHHhC
Confidence 777777755 6788999999999999999875
No 53
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.71 E-value=2.5e-16 Score=177.94 Aligned_cols=163 Identities=23% Similarity=0.247 Sum_probs=124.9
Q ss_pred eecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCe----------EEEecCceEEEEEeCCCCCCCCCC
Q 005024 424 LEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGI----------TTSLNARTAVLSAANPAWGRYDLR 493 (718)
Q Consensus 424 ~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~----------~~~l~~~~~viaa~Np~~g~~~~~ 493 (718)
+++|++..|++|+|||||++.|++..|..|+++|+++.+.+. |. ....|.++.+|+++|+.. .+
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~--g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l-l~--- 290 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPIT--GQSERSSGAMVRTEPVPCDFIMVAAGNLDA-LE--- 290 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEec--ccccccccccCCCcceeeeeEEEEecCcCH-HH---
Confidence 489999999999999999999999999999999999998875 32 345678999999999852 11
Q ss_pred CCcchhcCCChhhhcccce---EEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh------c
Q 005024 494 RTPAENINLPPALLSRFDL---LWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR------L 564 (718)
Q Consensus 494 ~~~~~~~~l~~~ll~Rfdl---i~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~------~ 564 (718)
.++++|.+||.. -..+. ...+-+.+..+.|+.+..+ .
T Consensus 291 -------~~dpdL~~rfk~~~v~v~f~---------------------------~~~~d~~e~~~~~~~~iaqe~~~~G~ 336 (637)
T PRK13765 291 -------NMHPALRSRIKGYGYEVYMR---------------------------DTMEDTPENRRKLVRFVAQEVKRDGK 336 (637)
T ss_pred -------hhhHHHHHHhccCeEEEEcc---------------------------cccCCCHHHHHHHHHHHHHHhhhccC
Confidence 568899999862 22211 1122344555666655432 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 565 SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 565 ~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
.|.+++++...|+++|...-. .+.......|++..++|.|...|+.+.++.|+.+||.+|+.
T Consensus 337 l~~f~~eAVa~LI~~~~R~ag-----~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 337 IPHFDRDAVEEIIREAKRRAG-----RKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred CCCCCHHHHHHHHHHHHHHhC-----CccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 467999999999999865432 12334567899999999999999999999999999998874
No 54
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.71 E-value=1.5e-16 Score=177.57 Aligned_cols=269 Identities=12% Similarity=0.128 Sum_probs=173.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---eee--cCCCCCCCcceeeEee----cccccceeeecceEeeecCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VYT--TGRGSSGVGLTAAVQR----DNVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~~--~~~~~~~~~l~~~~~~----~~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
++++.|++||||+.++++++..+++. ++. |+.... .+...... ..++|......|.+..|++|++||||
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~--~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE--SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH--HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 79999999999999999999888653 222 332211 11111111 12233334457889999999999999
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCC
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRAD 521 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~ 521 (718)
++.|++..|..|+++++++.+... |.....+.++++|+|++..... ....-.+...|+.|+..+-+- .|.
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~~~--~~~~~~~~~~rii~~t~~~~~~------~~~~~~~~~~l~~~l~~~~i~--~pp 311 (441)
T PRK10365 242 IGDISPMMQVRLLRAIQEREVQRV--GSNQTISVDVRLIAATHRDLAA------EVNAGRFRQDLYYRLNVVAIE--VPS 311 (441)
T ss_pred cccCCHHHHHHHHHHHccCcEEeC--CCCceeeeceEEEEeCCCCHHH------HHHcCCchHHHHHHhccceec--CCC
Confidence 999999999999999999987655 6666778889999999876200 000113556666666544332 121
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
..+ ..++++.+...++.++........+.+++++.+.|..| .||+|+|+
T Consensus 312 Lre-----------------R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--------------~wpgN~re 360 (441)
T PRK10365 312 LRQ-----------------RREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY--------------DWPGNIRE 360 (441)
T ss_pred hhh-----------------cchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--------------CCCCHHHH
Confidence 111 11233344445555543322222346999999999987 79999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWI 681 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~ 681 (718)
|+++++.+...+ ....++.+|+...+.. ... . ...........+....+|...+..++++ ..++|
T Consensus 361 L~~~~~~~~~~~---~~~~i~~~~l~~~~~~--~~~---~-~~~~~~~~~l~~~e~~~i~~~l~~~~gn------~~~aa 425 (441)
T PRK10365 361 LENAVERAVVLL---TGEYISERELPLAIAS--TPI---P-LGQSQDIQPLVEVEKEVILAALEKTGGN------KTEAA 425 (441)
T ss_pred HHHHHHHHHHhC---CCCccchHhCchhhcc--ccc---C-cccccchhhHHHHHHHHHHHHHHHhCCC------HHHHH
Confidence 999999876654 4567999888655421 000 0 0000001111222334677777777754 67889
Q ss_pred HHcCCCHHHHHHHHHH
Q 005024 682 SRKGYSEAQLKECLEE 697 (718)
Q Consensus 682 ~~~g~~~~~~~~~l~~ 697 (718)
+.+|+++++++++|++
T Consensus 426 ~~Lgisr~tl~rk~~~ 441 (441)
T PRK10365 426 RQLGITRKTLLAKLSR 441 (441)
T ss_pred HHhCCCHHHHHHHhhC
Confidence 9999999999999863
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.70 E-value=8.6e-16 Score=158.21 Aligned_cols=207 Identities=26% Similarity=0.360 Sum_probs=142.1
Q ss_pred HHHhhcCC----cccccHHH---HHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 329 KLARSLAP----EIYGHEDI---KKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 329 ~l~~si~p----~i~g~~~~---k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
.|+..+.| +++||+.+ .+.|--++.+|... +++|+||||||||++|+.|+......+....
T Consensus 13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~------------SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLH------------SMILWGPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred ChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCc------------eeEEECCCCCCHHHHHHHHHHhhCCceEEec
Confidence 45555556 79999997 23455666666543 8999999999999999999998876655433
Q ss_pred CCCCCCcceeeEeecccccceeeecc-e-EeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 402 RGSSGVGLTAAVQRDNVTNEMVLEGG-A-LVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~g~~~~~~g-~-l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
...+...- ++.. ++.. . .....+-|+|||||++++...|.+|+..||.|++.+. |.+
T Consensus 81 Av~~gvkd----lr~i------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilI--GAT--------- 139 (436)
T COG2256 81 AVTSGVKD----LREI------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILI--GAT--------- 139 (436)
T ss_pred cccccHHH----HHHH------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEE--ecc---------
Confidence 22221100 1110 0000 0 0011245899999999999999999999999987664 221
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYIS 559 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~ 559 (718)
|-||.+ .+.+||+||+ .+|. +.|++.+.+++.+.
T Consensus 140 --TENPsF-------------~ln~ALlSR~-~vf~------------------------------lk~L~~~di~~~l~ 173 (436)
T COG2256 140 --TENPSF-------------ELNPALLSRA-RVFE------------------------------LKPLSSEDIKKLLK 173 (436)
T ss_pred --CCCCCe-------------eecHHHhhhh-heee------------------------------eecCCHHHHHHHHH
Confidence 245655 8999999999 5554 36678888888887
Q ss_pred HHHh-----c---CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 560 AARR-----L---SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 560 ~~~~-----~---~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
.+.. + .+.+++++.++|+.. ..|++|.+.+++.++...++-+. ..+.+++.+.+.
T Consensus 174 ra~~~~~rgl~~~~~~i~~~a~~~l~~~---------------s~GD~R~aLN~LE~~~~~~~~~~--~~~~~~l~~~l~ 236 (436)
T COG2256 174 RALLDEERGLGGQIIVLDEEALDYLVRL---------------SNGDARRALNLLELAALSAEPDE--VLILELLEEILQ 236 (436)
T ss_pred HHHhhhhcCCCcccccCCHHHHHHHHHh---------------cCchHHHHHHHHHHHHHhcCCCc--ccCHHHHHHHHh
Confidence 7432 1 123789999999985 57999999999999988775332 334666666554
No 56
>CHL00181 cbbX CbbX; Provisional
Probab=99.66 E-value=4e-16 Score=161.83 Aligned_cols=219 Identities=18% Similarity=0.193 Sum_probs=133.2
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHH----hCCccccCCCCcc-ccccceeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLL----VGAPHRKLKDGMK-IRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l----~~~~~~~~~~~~~-~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
.+.+..++.++++|++.+|+.|.-.. ...... .-|.. .+...|+||+||||||||++|+++++.+... |
T Consensus 14 ~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~--~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~----g 87 (287)
T CHL00181 14 IQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRK--NLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKL----G 87 (287)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHc----C
Confidence 45667888899999999999774221 111000 01111 1223489999999999999999999875221 1
Q ss_pred CCCCCCcceeeEeeccccccee-----eecceEeeecCCeeeecccccC---------ChHHHHHHHHhhcccEEEEeeC
Q 005024 402 RGSSGVGLTAAVQRDNVTNEMV-----LEGGALVLADMGICAIDEFDKM---------DESDRTAIHEVMEQQTVSIAKA 467 (718)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~g~~~-----~~~g~l~~a~~gil~iDEi~~~---------~~~~~~~L~~~me~~~i~i~k~ 467 (718)
.... +-...+..+...+.+. ...+.+..|.+||+||||++.+ ..+.+..|++.|+++.
T Consensus 88 ~~~~--~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~------ 159 (287)
T CHL00181 88 YIKK--GHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR------ 159 (287)
T ss_pred CCCC--CceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC------
Confidence 1000 0000000110011110 0123344567899999999986 4567788999998642
Q ss_pred CeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCC
Q 005024 468 GITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFT 547 (718)
Q Consensus 468 g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~ 547 (718)
.++.||+|+++.. ...-..++++|.+||+..+. ++
T Consensus 160 -------~~~~vI~ag~~~~--------~~~~~~~np~L~sR~~~~i~------------------------------F~ 194 (287)
T CHL00181 160 -------DDLVVIFAGYKDR--------MDKFYESNPGLSSRIANHVD------------------------------FP 194 (287)
T ss_pred -------CCEEEEEeCCcHH--------HHHHHhcCHHHHHhCCceEE------------------------------cC
Confidence 3567888876541 00011567999999988764 34
Q ss_pred CCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHH
Q 005024 548 PLEPAILRAYISAA-RRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAA 611 (718)
Q Consensus 548 ~~~~~~l~~~i~~~-~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a 611 (718)
+++.+++.+++... .+....+++++.+.+.++....+. ..|.+|+|.+.++++.+..
T Consensus 195 ~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~-------~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 195 DYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRME-------QPLFANARSVRNALDRARM 252 (287)
T ss_pred CcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC-------CCCCccHHHHHHHHHHHHH
Confidence 45555555555443 234456888888888777654332 3588999999999974433
No 57
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-16 Score=174.86 Aligned_cols=272 Identities=23% Similarity=0.346 Sum_probs=160.2
Q ss_pred ccceeeeeEEEEeeccccccccCChHHHHHHHHHhhChhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccc
Q 005024 287 VADTYLEAMSVTHFKKKYEEYELRGDEEEHISRLAEDGDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKI 366 (718)
Q Consensus 287 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~ 366 (718)
+.+.||+|+--.+|..... ..-|++. ...-+..+.||.+.+|..|+-.|+-+.... ..
T Consensus 291 ViRnYlDwll~lPW~~~sk----~~~Dl~~-------------a~~iLd~dHYGLekVKeRIlEyLAV~~l~~-----~~ 348 (782)
T COG0466 291 VIRNYLDWLLDLPWGKRSK----DKLDLKK-------------AEKILDKDHYGLEKVKERILEYLAVQKLTK-----KL 348 (782)
T ss_pred HHHHHHHHHHhCCCccccc----hhhhHHH-------------HHHHhcccccCchhHHHHHHHHHHHHHHhc-----cC
Confidence 4577888876666654321 1112222 233466899999999999997776543222 24
Q ss_pred cccceeeecCCCcchHHHHHHHHHHHCCCceeecCCC--CCCCcceeeEeecccccceeeecceEeee------cCCeee
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRG--SSGVGLTAAVQRDNVTNEMVLEGGALVLA------DMGICA 438 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~~~~~~g~l~~a------~~gil~ 438 (718)
+|.| ++|+||||+|||+|++.||+.+.|.++....+ -..+++-+. |..+-| --||.+.++ .+-+++
T Consensus 349 kGpI-LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH--RRTYIG---amPGrIiQ~mkka~~~NPv~L 422 (782)
T COG0466 349 KGPI-LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH--RRTYIG---AMPGKIIQGMKKAGVKNPVFL 422 (782)
T ss_pred CCcE-EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc--cccccc---cCChHHHHHHHHhCCcCCeEE
Confidence 5556 99999999999999999999999988764332 111111111 111111 123433332 567999
Q ss_pred ecccccCChHHH----HHHHHhhc-ccEEEEeeCCeEEEec-CceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccce
Q 005024 439 IDEFDKMDESDR----TAIHEVME-QQTVSIAKAGITTSLN-ARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDL 512 (718)
Q Consensus 439 iDEi~~~~~~~~----~~L~~~me-~~~i~i~k~g~~~~l~-~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdl 512 (718)
|||||+|+.+.+ ++|+|+|+ +|.-++.-......+. +++.||||+|... .+|.||+||..+
T Consensus 423 LDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~-------------tIP~PLlDRMEi 489 (782)
T COG0466 423 LDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD-------------TIPAPLLDRMEV 489 (782)
T ss_pred eechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc-------------cCChHHhcceee
Confidence 999999987765 79999995 2322222112222222 5899999999886 699999999987
Q ss_pred EEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCC
Q 005024 513 LWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNT 592 (718)
Q Consensus 513 i~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~ 592 (718)
+-+. .+...+ -..||+. | +-+..+++.-.. ...-.++++|+..|+++|..
T Consensus 490 I~ls-gYt~~E-Kl~IAk~----~------------LiPk~~~~~gL~--~~el~i~d~ai~~iI~~YTR---------- 539 (782)
T COG0466 490 IRLS-GYTEDE-KLEIAKR----H------------LIPKQLKEHGLK--KGELTITDEAIKDIIRYYTR---------- 539 (782)
T ss_pred eeec-CCChHH-HHHHHHH----h------------cchHHHHHcCCC--ccceeecHHHHHHHHHHHhH----------
Confidence 7652 333222 2233322 2 111111111100 11235899999999999953
Q ss_pred CCcccCHHHHHHHHH-HHHHHHH----hcCCC--CccHHHHHHHHHH
Q 005024 593 PHSYTTVRTLLSILR-ISAALAR----LRFSE--TVAQSDVDEALRL 632 (718)
Q Consensus 593 ~~~~~s~R~l~~lir-la~a~A~----l~~~~--~V~~~dv~~ai~l 632 (718)
...+|.|+.-|. +++..|+ -.... .|+..++.+-+..
T Consensus 540 ---EAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 540 ---EAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 233565555442 3333332 12222 4677777776543
No 58
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.66 E-value=3.8e-15 Score=166.87 Aligned_cols=297 Identities=16% Similarity=0.147 Sum_probs=179.8
Q ss_pred cccccHHHHHHHHHHHhCCccccCCCCcccccccee-eecCCCcchHHHHHHHHHHHCCC-----------ceeecCCC-
Q 005024 337 EIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHI-CLMGDPGVAKSQLLKHIINVAPR-----------GVYTTGRG- 403 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~v-Ll~G~pGtGKt~la~~i~~~~~~-----------~~~~~~~~- 403 (718)
.+.|++.-...|...|........+. ++ +|+|+||||||.+++++.+.+.. .+|..+..
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpn--------nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSN--------QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCC--------ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 67788886666665554321100111 44 69999999999999999776521 12332211
Q ss_pred CCCCcceeeEe-----eccccccee---eec--ceEeeecC--CeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEE
Q 005024 404 SSGVGLTAAVQ-----RDNVTNEMV---LEG--GALVLADM--GICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITT 471 (718)
Q Consensus 404 ~~~~~l~~~~~-----~~~~~g~~~---~~~--g~l~~a~~--gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~ 471 (718)
.+.......+. ..+.+|... +.. ..+..+.+ -||+|||||.+....+..|+.+++-..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~---------- 897 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT---------- 897 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh----------
Confidence 11100000000 001111000 000 00001112 389999999998777888888776311
Q ss_pred EecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCH
Q 005024 472 SLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEP 551 (718)
Q Consensus 472 ~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 551 (718)
....++.|||.+|...-.. .+.+.+.+||..-. ..|+|++.
T Consensus 898 ~s~SKLiLIGISNdlDLpe----------rLdPRLRSRLg~ee-----------------------------IvF~PYTa 938 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPE----------RLIPRCRSRLAFGR-----------------------------LVFSPYKG 938 (1164)
T ss_pred ccCCeEEEEEecCchhcch----------hhhhhhhhcccccc-----------------------------ccCCCCCH
Confidence 1134688999999653111 45567777773211 24788999
Q ss_pred HHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 552 AILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 552 ~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
++|+.++..... ....+++++++++++... ...|++|.+..+++.|...+ ....|+++||.+|+
T Consensus 939 EQL~dILk~RAe~A~gVLdDdAIELIArkVA------------q~SGDARKALDILRrAgEik---egskVT~eHVrkAl 1003 (1164)
T PTZ00112 939 DEIEKIIKERLENCKEIIDHTAIQLCARKVA------------NVSGDIRKALQICRKAFENK---RGQKIVPRDITEAT 1003 (1164)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh------------hcCCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHH
Confidence 999999887655 345799999999988432 24699999999999998764 55689999999999
Q ss_pred HHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHH----HH----HcCCCHH--HHHHHHHHHHh
Q 005024 631 RLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNW----IS----RKGYSEA--QLKECLEEYAA 700 (718)
Q Consensus 631 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~----~~----~~g~~~~--~~~~~l~~l~~ 700 (718)
..+..+........ .+. ....++.+|-.++...+...++.++|++. |+ ..|+.+. ++.++|.+|..
T Consensus 1004 eeiE~srI~e~Ikt--LPl--HqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~plTqRV~d~L~eL~~ 1079 (1164)
T PTZ00112 1004 NQLFDSPLTNAINY--LPW--PFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVK 1079 (1164)
T ss_pred HHHHhhhHHHHHHc--CCH--HHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHh
Confidence 87765543211111 111 12234444444444434435788888776 44 3455543 69999999999
Q ss_pred cCeEEEeCC
Q 005024 701 LNVWQIHPH 709 (718)
Q Consensus 701 ~g~i~~~~~ 709 (718)
+|+|.+.+.
T Consensus 1080 LGIIl~ep~ 1088 (1164)
T PTZ00112 1080 MGILLIRPY 1088 (1164)
T ss_pred cCeEEecCC
Confidence 999998865
No 59
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.65 E-value=2e-16 Score=147.00 Aligned_cols=128 Identities=23% Similarity=0.418 Sum_probs=94.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee--cCCCCCCCcceeeEeecccccceeeecceEeee--cCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT--TGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLA--DMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a--~~gil~iDEi~~~~ 446 (718)
||||+||||||||++++.+++.+...++. ....++...|.+..... .+...+.+|.+..+ ++++++||||++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 69999999999999999999999776544 44444444555544333 45667777877755 78899999999999
Q ss_pred hHHHHHHHHhhcccEEEEeeCCeEEEecC------ceEEEEEeCCCC-CCCCCCCCcchhcCCChhhhccc
Q 005024 447 ESDRTAIHEVMEQQTVSIAKAGITTSLNA------RTAVLSAANPAW-GRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 447 ~~~~~~L~~~me~~~i~i~k~g~~~~l~~------~~~viaa~Np~~-g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
++.+..|+.+++++.+.+...+.....+. .+.+|||+||.. ++. .++++|+|||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~----------~l~~al~~Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRK----------ELSPALLDRF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TT----------TTCHHHHTT-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcC----------cCCHHHHhhC
Confidence 99999999999999988765555554444 499999999996 555 8999999998
No 60
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.64 E-value=1.2e-15 Score=158.56 Aligned_cols=218 Identities=17% Similarity=0.167 Sum_probs=130.6
Q ss_pred HHhhcCCcccccHHHHHHHHHHHhC--CccccCCCCccc-cccceeeecCCCcchHHHHHHHHHHHCCCc-------eee
Q 005024 330 LARSLAPEIYGHEDIKKALLLLLVG--APHRKLKDGMKI-RGDLHICLMGDPGVAKSQLLKHIINVAPRG-------VYT 399 (718)
Q Consensus 330 l~~si~p~i~g~~~~k~~i~~~l~~--~~~~~~~~~~~~-r~~i~vLl~G~pGtGKt~la~~i~~~~~~~-------~~~ 399 (718)
+.+.+..+++|++.+|+.|...... ........|... .+..|+||+||||||||++|+++++.+... ++.
T Consensus 16 ~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~ 95 (284)
T TIGR02880 16 VLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS 95 (284)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE
Confidence 4445556789999999987432111 000001112111 123389999999999999998888776321 111
Q ss_pred cCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccC---------ChHHHHHHHHhhcccEEEEeeCCeE
Q 005024 400 TGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKM---------DESDRTAIHEVMEQQTVSIAKAGIT 470 (718)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~---------~~~~~~~L~~~me~~~i~i~k~g~~ 470 (718)
... ..+....... +. ....+.+..|.+|++||||++.+ +.+.+..|++.|+++.
T Consensus 96 v~~----~~l~~~~~g~--~~--~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~--------- 158 (284)
T TIGR02880 96 VTR----DDLVGQYIGH--TA--PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR--------- 158 (284)
T ss_pred ecH----HHHhHhhccc--ch--HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC---------
Confidence 000 0111100000 00 00123344567899999999977 3456788999998642
Q ss_pred EEecCceEEEEEeCCCC-CCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCC
Q 005024 471 TSLNARTAVLSAANPAW-GRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPL 549 (718)
Q Consensus 471 ~~l~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~ 549 (718)
.++.+|+|+++.. ..| ..++++|.+||+..+.+ +++
T Consensus 159 ----~~~~vI~a~~~~~~~~~---------~~~np~L~sR~~~~i~f------------------------------p~l 195 (284)
T TIGR02880 159 ----DDLVVILAGYKDRMDSF---------FESNPGFSSRVAHHVDF------------------------------PDY 195 (284)
T ss_pred ----CCEEEEEeCCcHHHHHH---------HhhCHHHHhhCCcEEEe------------------------------CCc
Confidence 4678888887651 101 15689999999876643 334
Q ss_pred CHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHH
Q 005024 550 EPAILRAYISAA-RRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALAR 614 (718)
Q Consensus 550 ~~~~l~~~i~~~-~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~ 614 (718)
+.+++..++... ++....+++++.+.+.++....+. ..|++|+|++.++++.+.....
T Consensus 196 ~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~-------~~~~GN~R~lrn~ve~~~~~~~ 254 (284)
T TIGR02880 196 SEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRT-------QPHFANARSIRNAIDRARLRQA 254 (284)
T ss_pred CHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCC-------CCCCChHHHHHHHHHHHHHHHH
Confidence 444444444433 234457889998888886544332 3699999999999986655443
No 61
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.63 E-value=1.3e-16 Score=144.54 Aligned_cols=118 Identities=31% Similarity=0.584 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcccCCCcchHHHHHHHHHHcCCcEEEEehhhhhcccCCCHHHHHHHHHhHHHHHHHHHHHHHhhCCCCCC
Q 005024 10 KAFAKEFISNFADANGDAKYANILQDVANRKIRSIQIDLEDLFNYKDFDEEFFRRVTENTRRYIGIFASAIDELLPEPTE 89 (718)
Q Consensus 10 ~~~~~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~f~~~d~~La~~i~~np~~~~~~~~~a~~~~~~~~~~ 89 (718)
++.|++||.+|.. .++|+++|++|+..++++|.|||+||.+| |++||.+|++||.+|+++|++|+++++.+...
T Consensus 2 ~~~F~~Fl~~f~~---~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f---~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~ 75 (121)
T PF14551_consen 2 KRRFREFLREFKE---EPKYMDQLREMIQRNKKSLYVDLDDLREF---DPDLAEALIENPYRYLPLFEEALKEVVKELFP 75 (121)
T ss_dssp -HHHHHHCCCH-T---S-CCHHHHHHHHHHT-SCEEEEHHHHHHH----HHHHHHHHHCCCCCHHHHHHHHHHCHHTT--
T ss_pred hHHHHHHHHcCCC---chHHHHHHHHHHHcCCCEEEEEHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999998854 57999999999999999999999999999 99999999999999999999999998765332
Q ss_pred CCCCchhhHHhhhccccCCCCCCCCCCCCCCCccc--ceEEEEEEeeCCCCccccccccCcCCCCcEEEEEe
Q 005024 90 AFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEI--KRYYEVYIRASSKGRPFSIREVKASYIGQLVRISG 159 (718)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l--~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~G 159 (718)
.- .....|+.. ...++|++.+.+ ..+++|+|++.++|+||+|+|
T Consensus 76 ~~------------------------~~~~~~~~~~~~~~~~v~~~~~~--~~~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 76 SE------------------------QQSSFPPELKRRKEIQVRFYNLP--KSTSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp --------------------------------GCCTTTS--EEEEES-S---EE-GGG-SGGGTTSEEEEEE
T ss_pred hh------------------------cccCCchhhccceeEEEEEcCCC--CCcCcCCCChHHCCCEEEEeC
Confidence 00 000011111 235788888774 579999999999999999999
No 62
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=8.9e-15 Score=148.34 Aligned_cols=191 Identities=24% Similarity=0.247 Sum_probs=121.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccc-eeeecceEeee---cCCeeeecccccC-
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNE-MVLEGGALVLA---DMGICAIDEFDKM- 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~-~~~~~g~l~~a---~~gil~iDEi~~~- 445 (718)
.|||+||||||||+|||++|+...-.+... .++.+-..+-|+ -.+....+.+| ...|+||||||.+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrv---------vgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg 257 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRV---------VGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIG 257 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEe---------ccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhh
Confidence 599999999999999999998865443321 111111111111 01111223333 3469999999976
Q ss_pred ----------ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceE
Q 005024 446 ----------DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLL 513 (718)
Q Consensus 446 ----------~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli 513 (718)
..+.|-.|++.|.|= +|-.. ..++.||+|||... -|++|||+ |||=.
T Consensus 258 ~kR~d~~t~gDrEVQRTmleLL~ql------DGFD~--~~nvKVI~ATNR~D-------------~LDPALLRPGR~DRk 316 (406)
T COG1222 258 AKRFDSGTSGDREVQRTMLELLNQL------DGFDP--RGNVKVIMATNRPD-------------ILDPALLRPGRFDRK 316 (406)
T ss_pred cccccCCCCchHHHHHHHHHHHHhc------cCCCC--CCCeEEEEecCCcc-------------ccChhhcCCCcccce
Confidence 345677888888652 13211 34788999999887 79999999 99977
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCC
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTP 593 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~ 593 (718)
+-+ +.|+.....+ |+.+|.... ...+.++- +.|+..
T Consensus 317 IEf-plPd~~gR~~----Il~IHtrkM----------------------~l~~dvd~---e~la~~-------------- 352 (406)
T COG1222 317 IEF-PLPDEEGRAE----ILKIHTRKM----------------------NLADDVDL---ELLARL-------------- 352 (406)
T ss_pred eec-CCCCHHHHHH----HHHHHhhhc----------------------cCccCcCH---HHHHHh--------------
Confidence 643 5666555543 344442111 11112221 222221
Q ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 594 HSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 594 ~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
....|.-++.++.--|.-.|--+.+..||.+|+.+|+.-+..
T Consensus 353 ~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 353 TEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred cCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 345677889999999999998889999999999999986654
No 63
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.61 E-value=3.3e-15 Score=161.60 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=95.2
Q ss_pred hhcCCcccccHHHHHHHHHHHhCCccccCCCC-----ccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCC-C
Q 005024 332 RSLAPEIYGHEDIKKALLLLLVGAPHRKLKDG-----MKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS-S 405 (718)
Q Consensus 332 ~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~-----~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~-~ 405 (718)
+.|...|+||+.+|+++..++...... ...+ .....+.|+||+||||||||++|+++|+.+...++...... +
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r-~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKR-LRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT 145 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHh-hhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 445556999999999998776321000 0000 01123348999999999999999999998876555432211 1
Q ss_pred CCcceeeEeecccccceeeecceEeeecCCeeeecccccCChH--------------HHHHHHHhhcccEEEEeeCCeEE
Q 005024 406 GVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES--------------DRTAIHEVMEQQTVSIAKAGITT 471 (718)
Q Consensus 406 ~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~k~g~~~ 471 (718)
..++.+........+.+....+.+..+.+||+||||||+++.. .|.+|+++||...+.+...|...
T Consensus 146 ~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 146 EAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred cCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 1122111110000110111223445578899999999999753 78999999987666665444433
Q ss_pred EecCceEEEEEeCCC
Q 005024 472 SLNARTAVLSAANPA 486 (718)
Q Consensus 472 ~l~~~~~viaa~Np~ 486 (718)
.-..++.+|+|+|..
T Consensus 226 ~~~~~~~~i~t~nil 240 (412)
T PRK05342 226 HPQQEFIQVDTTNIL 240 (412)
T ss_pred cCCCCeEEeccCCce
Confidence 334688999999985
No 64
>PHA02244 ATPase-like protein
Probab=99.60 E-value=2.3e-14 Score=149.40 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=99.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEee--ecCCeeeecccccCChH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVL--ADMGICAIDEFDKMDES 448 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~--a~~gil~iDEi~~~~~~ 448 (718)
+|||.||||||||++|++++..+...++..........+.+.. ...| .+..|.+.. +++|+|+|||++.++++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i---~~~g--~~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFI---DANG--KFHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccc---cccc--cccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 8999999999999999999999887766543221111121111 1122 344454443 47899999999999999
Q ss_pred HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCC
Q 005024 449 DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRAD 521 (718)
Q Consensus 449 ~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~ 521 (718)
.+..|+.+++++.+.+. |.....+.+|++|||+||....|+. -+...-.+++++++|| +. +-.++|.
T Consensus 196 vq~~L~~lLd~r~l~l~--g~~i~~h~~FRlIATsN~~~~G~~~--~y~G~k~L~~AllDRF-v~-I~~dyp~ 262 (383)
T PHA02244 196 ALIIINSAIANKFFDFA--DERVTAHEDFRVISAGNTLGKGADH--IYVARNKIDGATLDRF-AP-IEFDYDE 262 (383)
T ss_pred HHHHHHHHhccCeEEec--CcEEecCCCEEEEEeeCCCccCccc--ccCCCcccCHHHHhhc-EE-eeCCCCc
Confidence 99999999999877765 7777788999999999997422321 1112237999999999 33 3346664
No 65
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.60 E-value=3.5e-14 Score=141.27 Aligned_cols=196 Identities=19% Similarity=0.220 Sum_probs=132.2
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC-ceeecCCCC---C-CCcce
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR-GVYTTGRGS---S-GVGLT 410 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~-~~~~~~~~~---~-~~~l~ 410 (718)
.++.|++.++.++.-++.++..+ |.||+||||||||+.|+++++.+.- ..+.+|... + ..|..
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp------------~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis 103 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILP------------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS 103 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCc------------eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc
Confidence 47889999999999999885433 9999999999999999999988732 222222211 1 11111
Q ss_pred eeEeecccccc---eeee--cceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCC
Q 005024 411 AAVQRDNVTNE---MVLE--GGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANP 485 (718)
Q Consensus 411 ~~~~~~~~~g~---~~~~--~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np 485 (718)
+.+....+- .... .-.-....-.|++|||.|.|+.+.|++|.+.||.- +-.+++|.-||.
T Consensus 104 --vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-------------s~~trFiLIcny 168 (346)
T KOG0989|consen 104 --VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF-------------SRTTRFILICNY 168 (346)
T ss_pred --chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc-------------ccceEEEEEcCC
Confidence 111111000 0000 00011112369999999999999999999999951 123445555887
Q ss_pred CCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-c
Q 005024 486 AWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-L 564 (718)
Q Consensus 486 ~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~ 564 (718)
.. .|+.++.||+--+ .|+++..+.+-..+.++.. -
T Consensus 169 ls-------------rii~pi~SRC~Kf-------------------------------rFk~L~d~~iv~rL~~Ia~~E 204 (346)
T KOG0989|consen 169 LS-------------RIIRPLVSRCQKF-------------------------------RFKKLKDEDIVDRLEKIASKE 204 (346)
T ss_pred hh-------------hCChHHHhhHHHh-------------------------------cCCCcchHHHHHHHHHHHHHh
Confidence 76 7999999999333 3677777777777777655 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCcc
Q 005024 565 SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVA 622 (718)
Q Consensus 565 ~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~ 622 (718)
...+++++.+.|+.. ..|+.|.++.++.-+ |. +...|+
T Consensus 205 ~v~~d~~al~~I~~~---------------S~GdLR~Ait~Lqsl---s~--~gk~It 242 (346)
T KOG0989|consen 205 GVDIDDDALKLIAKI---------------SDGDLRRAITTLQSL---SL--LGKRIT 242 (346)
T ss_pred CCCCCHHHHHHHHHH---------------cCCcHHHHHHHHHHh---hc--cCcccc
Confidence 457999999999985 689999999988643 32 445566
No 66
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.59 E-value=3.1e-14 Score=162.59 Aligned_cols=228 Identities=25% Similarity=0.281 Sum_probs=145.2
Q ss_pred cCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC----------cee-ecCC
Q 005024 334 LAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR----------GVY-TTGR 402 (718)
Q Consensus 334 i~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~----------~~~-~~~~ 402 (718)
-.++++|++.+.++++..+..+... +++|+||||||||++|+.++..+.. .+. ..+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~------------~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~ 219 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQ------------HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT 219 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCC------------eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence 3347999999888877666544321 8999999999999999999877631 111 1111
Q ss_pred CCCC------CcceeeEeecc----------cccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEee
Q 005024 403 GSSG------VGLTAAVQRDN----------VTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAK 466 (718)
Q Consensus 403 ~~~~------~~l~~~~~~~~----------~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k 466 (718)
.... ..+.+.. .++ ..|......|.+..+++|++||||++.|++..|..|+++|+++.+.+..
T Consensus 220 ~l~~d~~~i~~~llg~~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~ 298 (615)
T TIGR02903 220 TLRWDPREVTNPLLGSV-HDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSS 298 (615)
T ss_pred hccCCHHHHhHHhcCCc-cHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeec
Confidence 1000 0011110 000 0122234456777889999999999999999999999999999876652
Q ss_pred CCe---------------EEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhh
Q 005024 467 AGI---------------TTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARH 531 (718)
Q Consensus 467 ~g~---------------~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~ 531 (718)
+.. ....+.++.++++++.... .++++|.+||..+.
T Consensus 299 ~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~------------~l~~aLrSR~~~i~----------------- 349 (615)
T TIGR02903 299 SYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE------------EINPALRSRCAEVF----------------- 349 (615)
T ss_pred ceeccCCcccchhhhhhcccCccceEEEEEecccccc------------ccCHHHHhceeEEE-----------------
Confidence 211 0112456777776664422 58899999997553
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHH
Q 005024 532 VVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISA 610 (718)
Q Consensus 532 il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~ 610 (718)
+++++.+.+..++..... ....+++++.+.|..+ .|++ |...+++..+.
T Consensus 350 --------------~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~y--------------s~~g--Rraln~L~~~~ 399 (615)
T TIGR02903 350 --------------FEPLTPEDIALIVLNAAEKINVHLAAGVEELIARY--------------TIEG--RKAVNILADVY 399 (615)
T ss_pred --------------eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHC--------------CCcH--HHHHHHHHHHH
Confidence 234555556666655433 3346899999998885 4543 66666665554
Q ss_pred HHHHhc--------CCCCccHHHHHHHHHHH
Q 005024 611 ALARLR--------FSETVAQSDVDEALRLM 633 (718)
Q Consensus 611 a~A~l~--------~~~~V~~~dv~~ai~l~ 633 (718)
..+..+ ....|+.+||.++++.-
T Consensus 400 ~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 400 GYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 443211 22369999999998754
No 67
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.59 E-value=6.2e-14 Score=152.43 Aligned_cols=303 Identities=16% Similarity=0.166 Sum_probs=177.1
Q ss_pred cCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC----------ceee-cCC
Q 005024 334 LAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR----------GVYT-TGR 402 (718)
Q Consensus 334 i~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~----------~~~~-~~~ 402 (718)
+.+.++|++.-...|...|........+. +++++||||||||++++++.+.+.. .++. +..
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~--------~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPS--------NVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCC--------cEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 34468899887777766654211000111 7999999999999999999876421 1222 111
Q ss_pred CCCCCcce----eeEe--e--cccccc---eeeec--ceEe-eecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCC
Q 005024 403 GSSGVGLT----AAVQ--R--DNVTNE---MVLEG--GALV-LADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAG 468 (718)
Q Consensus 403 ~~~~~~l~----~~~~--~--~~~~g~---~~~~~--g~l~-~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g 468 (718)
..+...+. .... . .+..+. -.+.. ..+. .....+++|||+|.+....+..|...+.-..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~------- 157 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARS------- 157 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccc-------
Confidence 11100000 0000 0 000000 00000 0010 1123489999999995333333433332100
Q ss_pred eEEEe-cCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCC
Q 005024 469 ITTSL-NARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFT 547 (718)
Q Consensus 469 ~~~~l-~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~ 547 (718)
.... +.++.+|+++|...-.. .+.+.+.+||.-..+ .++
T Consensus 158 -~~~~~~~~v~lI~i~n~~~~~~----------~l~~~~~s~~~~~~i-----------------------------~f~ 197 (365)
T TIGR02928 158 -NGDLDNAKVGVIGISNDLKFRE----------NLDPRVKSSLCEEEI-----------------------------IFP 197 (365)
T ss_pred -ccCCCCCeEEEEEEECCcchHh----------hcCHHHhccCCccee-----------------------------eeC
Confidence 0111 24678899998653111 467778888842211 356
Q ss_pred CCCHHHHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHH
Q 005024 548 PLEPAILRAYISAARR--L-SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQS 624 (718)
Q Consensus 548 ~~~~~~l~~~i~~~~~--~-~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~ 624 (718)
|++.+++..++..... . ...+++++.+++..... ...|++|.+..+++.|...|..+++..|+.+
T Consensus 198 p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~------------~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~ 265 (365)
T TIGR02928 198 PYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA------------QEHGDARKAIDLLRVAGEIAEREGAERVTED 265 (365)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH------------HhcCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 7788888888876543 2 23588888887766532 1358999999999999988988888899999
Q ss_pred HHHHHHHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHH----HHHcC---CCHHHHHHHHHH
Q 005024 625 DVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNW----ISRKG---YSEAQLKECLEE 697 (718)
Q Consensus 625 dv~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~----~~~~g---~~~~~~~~~l~~ 697 (718)
||..|+..+..+...- ..... ......++.++..+... +...+..+++++. |+..| ++..++.+.+++
T Consensus 266 ~v~~a~~~~~~~~~~~--~i~~l--~~~~~~~l~ai~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~ 340 (365)
T TIGR02928 266 HVEKAQEKIEKDRLLE--LIRGL--PTHSKLVLLAIANLAAN-DEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNE 340 (365)
T ss_pred HHHHHHHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 9999998875443211 00111 11223355556555443 3445777877774 45556 667999999999
Q ss_pred HHhcCeEEEeC
Q 005024 698 YAALNVWQIHP 708 (718)
Q Consensus 698 l~~~g~i~~~~ 708 (718)
|..+|++....
T Consensus 341 l~~~gli~~~~ 351 (365)
T TIGR02928 341 LDMLGLVEAEE 351 (365)
T ss_pred HHhcCCeEEEE
Confidence 99999999864
No 68
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.6e-15 Score=162.23 Aligned_cols=205 Identities=18% Similarity=0.341 Sum_probs=129.7
Q ss_pred hhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeec--CCCCCCCcc
Q 005024 332 RSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTT--GRGSSGVGL 409 (718)
Q Consensus 332 ~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~--~~~~~~~~l 409 (718)
..+..+.||++++|+.|+-.++-|..+.. .+|.| ++|+||||+|||++++.||+.+.|.++.. |.....+++
T Consensus 407 ~iLdeDHYgm~dVKeRILEfiAV~kLrgs-----~qGkI-lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 407 EILDEDHYGMEDVKERILEFIAVGKLRGS-----VQGKI-LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred HhhcccccchHHHHHHHHHHHHHHhhccc-----CCCcE-EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhh
Confidence 34667999999999999988876654322 34555 99999999999999999999999998763 333332222
Q ss_pred eeeEeecccccceeeecceEee------ecCCeeeecccccCChHH----HHHHHHhhcc-cEEEEeeCCeEEEec-Cce
Q 005024 410 TAAVQRDNVTNEMVLEGGALVL------ADMGICAIDEFDKMDESD----RTAIHEVMEQ-QTVSIAKAGITTSLN-ART 477 (718)
Q Consensus 410 ~~~~~~~~~~g~~~~~~g~l~~------a~~gil~iDEi~~~~~~~----~~~L~~~me~-~~i~i~k~g~~~~l~-~~~ 477 (718)
-+. |..+-| --||.++. ..+-+++|||+|++.... -++|+|+|+- |.-++.-......+. +.+
T Consensus 481 kGH--RRTYVG---AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 481 KGH--RRTYVG---AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ccc--ceeeec---cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 211 111111 12444443 367799999999997544 3789999952 322221112222222 578
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAY 557 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 557 (718)
.||||+|... .||+||+||..+|- .+....++++ +|...| .+.+.
T Consensus 556 LFicTAN~id-------------tIP~pLlDRMEvIe----lsGYv~eEKv--~IA~~y----------------Lip~a 600 (906)
T KOG2004|consen 556 LFICTANVID-------------TIPPPLLDRMEVIE----LSGYVAEEKV--KIAERY----------------LIPQA 600 (906)
T ss_pred EEEEeccccc-------------cCChhhhhhhheee----ccCccHHHHH--HHHHHh----------------hhhHH
Confidence 9999999887 89999999998773 4555444444 222211 01111
Q ss_pred HHHHH--hcCCCCCHHHHHHHHHHHHH
Q 005024 558 ISAAR--RLSPCVPRELEEYIAAAYSN 582 (718)
Q Consensus 558 i~~~~--~~~p~ls~~~~~~l~~~y~~ 582 (718)
...+. .-+..+++++...|+.+|+.
T Consensus 601 ~~~~gl~~e~v~is~~al~~lI~~Ycr 627 (906)
T KOG2004|consen 601 LKDCGLKPEQVKISDDALLALIERYCR 627 (906)
T ss_pred HHHcCCCHHhcCccHHHHHHHHHHHHH
Confidence 11110 01235899999988888854
No 69
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.58 E-value=2.2e-14 Score=147.90 Aligned_cols=216 Identities=16% Similarity=0.189 Sum_probs=127.3
Q ss_pred cccccHHHHHHHHHHHhCC--ccccCCCCccc-cccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE
Q 005024 337 EIYGHEDIKKALLLLLVGA--PHRKLKDGMKI-RGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV 413 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~--~~~~~~~~~~~-r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~ 413 (718)
+++|++.+|..|.-....- .......|... .+..|++|+||||||||++|+++++.+... +..+.. .+ ...
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~----~~~~~~-~~-v~~ 80 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM----NVLSKG-HL-IEV 80 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc----CcccCC-ce-EEe
Confidence 4789999998875221110 00001112211 122499999999999999999999875211 110000 00 000
Q ss_pred eecccccceee-----ecceEeeecCCeeeecccccCC--------hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEE
Q 005024 414 QRDNVTNEMVL-----EGGALVLADMGICAIDEFDKMD--------ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVL 480 (718)
Q Consensus 414 ~~~~~~g~~~~-----~~g~l~~a~~gil~iDEi~~~~--------~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~vi 480 (718)
......+.+.. ..+.+..|.+||+||||++.+. .+.+..|++.|+++ ..++.+|
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~-------------~~~~~vi 147 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN-------------RNEFVLI 147 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-------------CCCEEEE
Confidence 00001111110 1123445668999999999875 34567788888753 1345666
Q ss_pred EEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH
Q 005024 481 SAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA 560 (718)
Q Consensus 481 aa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~ 560 (718)
+++++.... .-..++++|.+||+..+.+ ++++.+++.+++..
T Consensus 148 la~~~~~~~--------~~~~~~p~L~sRf~~~i~f------------------------------~~~~~~el~~Il~~ 189 (261)
T TIGR02881 148 LAGYSDEMD--------YFLSLNPGLRSRFPISIDF------------------------------PDYTVEELMEIAER 189 (261)
T ss_pred ecCCcchhH--------HHHhcChHHHhccceEEEE------------------------------CCCCHHHHHHHHHH
Confidence 666654210 0115789999999776543 44555555555554
Q ss_pred HHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHH
Q 005024 561 ARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALAR 614 (718)
Q Consensus 561 ~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~ 614 (718)
... ....+++++.+.|.+++..++.. ....++|+|.+.+++..|.....
T Consensus 190 ~~~~~~~~l~~~a~~~l~~~~~~~~~~-----~~~~~gn~R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 190 MVKEREYKLTEEAKWKLREHLYKVDQL-----SSREFSNARYVRNIIEKAIRRQA 239 (261)
T ss_pred HHHHcCCccCHHHHHHHHHHHHHHHhc-----cCCCCchHHHHHHHHHHHHHHHH
Confidence 433 33469999999998887766542 12468999999999998766553
No 70
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.58 E-value=9.9e-15 Score=156.83 Aligned_cols=249 Identities=18% Similarity=0.196 Sum_probs=140.2
Q ss_pred HHHhhcCCcccccHHHHHHHHHHHhC---Cc-c---ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 329 KLARSLAPEIYGHEDIKKALLLLLVG---AP-H---RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 329 ~l~~si~p~i~g~~~~k~~i~~~l~~---~~-~---~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
.+.+.+...|+||+.+|+++..++.. +. . ....++ ...+..|+||+||||||||++|+++|+.+...+....
T Consensus 70 ~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~-~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 70 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNG-VELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred HHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccc-cccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 34556777899999999999887731 10 0 000010 1122349999999999999999999998865443321
Q ss_pred CC-CCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh--------------HHHHHHHHhhcccEEE-Ee
Q 005024 402 RG-SSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE--------------SDRTAIHEVMEQQTVS-IA 465 (718)
Q Consensus 402 ~~-~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~--------------~~~~~L~~~me~~~i~-i~ 465 (718)
.. .+..++.+.......+......++.+..+.+||+||||++++.+ ..|..|+++|| |++. +.
T Consensus 149 a~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~ 227 (413)
T TIGR00382 149 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVP 227 (413)
T ss_pred hhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecc
Confidence 11 11112211111110111111224555667889999999999986 58999999996 5554 32
Q ss_pred eCCeEEEecCceEEEEEeCCC---CCCCCCCC--------------------------Ccc--------hhcCCChhhhc
Q 005024 466 KAGITTSLNARTAVLSAANPA---WGRYDLRR--------------------------TPA--------ENINLPPALLS 508 (718)
Q Consensus 466 k~g~~~~l~~~~~viaa~Np~---~g~~~~~~--------------------------~~~--------~~~~l~~~ll~ 508 (718)
..|....-..++.+|.|+|.. .|.|+... .+. .+..+.|+|+.
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 223222223578899999984 34442100 000 01136677777
Q ss_pred ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHhhHh
Q 005024 509 RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR--RLSPCVPRELEEYIAAAYSNIRQE 586 (718)
Q Consensus 509 Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~p~ls~~~~~~l~~~y~~lr~~ 586 (718)
|+|.+..+ ++.+.+.-.+|+..-++ ..+++|..... .+.-.+++++.++|++..
T Consensus 308 Rld~Iv~f-~pL~~~~L~~Il~~~~n-----------------~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~------ 363 (413)
T TIGR00382 308 RLPVIATL-EKLDEEALIAILTKPKN-----------------ALVKQYQALFKMDNVELDFEEEALKAIAKKA------ 363 (413)
T ss_pred CCCeEeec-CCCCHHHHHHHHHHHHH-----------------HHHHHHHHHhccCCeEEEECHHHHHHHHHhC------
Confidence 87766543 33333333333222110 12222222111 133358999999988752
Q ss_pred hhhcCCCCcccCHHHHHHHHHHH
Q 005024 587 EAKSNTPHSYTTVRTLLSILRIS 609 (718)
Q Consensus 587 ~~~~~~~~~~~s~R~l~~lirla 609 (718)
......+|.|.++++..
T Consensus 364 ------~~~~~GAR~Lr~iie~~ 380 (413)
T TIGR00382 364 ------LERKTGARGLRSIVEGL 380 (413)
T ss_pred ------CCCCCCchHHHHHHHHh
Confidence 12456689999988744
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=9.5e-14 Score=153.12 Aligned_cols=212 Identities=17% Similarity=0.212 Sum_probs=138.9
Q ss_pred HHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCcee----ecCCC--
Q 005024 330 LARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVY----TTGRG-- 403 (718)
Q Consensus 330 l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~----~~~~~-- 403 (718)
....-..+++||+.++..|..++..+... . ++||+||||||||++|+.+++.+..... .|+..
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~~l~---~--------~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSIS---H--------AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCC---e--------EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 33334458999999999888888776422 1 4799999999999999999998743110 01110
Q ss_pred ---------CCCCcceeeEeecccccceeee-----cc-eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCC
Q 005024 404 ---------SSGVGLTAAVQRDNVTNEMVLE-----GG-ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAG 468 (718)
Q Consensus 404 ---------~~~~~l~~~~~~~~~~g~~~~~-----~g-~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g 468 (718)
.....+.++. ..|.-.++ .. .-..++..+++|||++.+..+.+..|+..|++.
T Consensus 77 c~~i~~g~~~dv~el~aa~----~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p-------- 144 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS----NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP-------- 144 (472)
T ss_pred HHHHhcCCCCccEEEeCcc----cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC--------
Confidence 0000111110 01100000 00 012345679999999999999999999999852
Q ss_pred eEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCC
Q 005024 469 ITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTP 548 (718)
Q Consensus 469 ~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 548 (718)
+..+.+|.++|... .+++++.+||.++. +.+
T Consensus 145 -----~~~vv~Ilattn~~-------------kl~~~L~SR~~vv~-------------------------------f~~ 175 (472)
T PRK14962 145 -----PSHVVFVLATTNLE-------------KVPPTIISRCQVIE-------------------------------FRN 175 (472)
T ss_pred -----CCcEEEEEEeCChH-------------hhhHHHhcCcEEEE-------------------------------ECC
Confidence 22345555544222 68999999995432 456
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 005024 549 LEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD 627 (718)
Q Consensus 549 ~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 627 (718)
++.+.+..++..+.. ..-.+++++.+.|.+. ..++.|.+.+++..+.+.+ ...||.+||.
T Consensus 176 l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~---------------s~GdlR~aln~Le~l~~~~----~~~It~e~V~ 236 (472)
T PRK14962 176 ISDELIIKRLQEVAEAEGIEIDREALSFIAKR---------------ASGGLRDALTMLEQVWKFS----EGKITLETVH 236 (472)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------hCCCHHHHHHHHHHHHHhc----CCCCCHHHHH
Confidence 777778888877654 3447999999999885 4689999999887654433 2359999999
Q ss_pred HHHHH
Q 005024 628 EALRL 632 (718)
Q Consensus 628 ~ai~l 632 (718)
+++..
T Consensus 237 ~~l~~ 241 (472)
T PRK14962 237 EALGL 241 (472)
T ss_pred HHHcC
Confidence 88754
No 72
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.58 E-value=1.4e-13 Score=151.17 Aligned_cols=297 Identities=16% Similarity=0.164 Sum_probs=175.6
Q ss_pred cCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC------ceeecCC-CCCC
Q 005024 334 LAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR------GVYTTGR-GSSG 406 (718)
Q Consensus 334 i~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~------~~~~~~~-~~~~ 406 (718)
+.+.++|.+.-...|...+..+.....+ .+++++|+||||||++++.+.+.+.. .++.... ..+.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~--------~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRP--------LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCC--------CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 3446778777666666555332111011 17999999999999999999876622 1222211 1110
Q ss_pred Cccee----eEee--cccccceeee----c--ceEe-eecCCeeeecccccCC----hHHHHHHHHhhcccEEEEeeCCe
Q 005024 407 VGLTA----AVQR--DNVTNEMVLE----G--GALV-LADMGICAIDEFDKMD----ESDRTAIHEVMEQQTVSIAKAGI 469 (718)
Q Consensus 407 ~~l~~----~~~~--~~~~g~~~~~----~--g~l~-~a~~gil~iDEi~~~~----~~~~~~L~~~me~~~i~i~k~g~ 469 (718)
..+.. .... .+..+ +... . ..+. ....-+++|||+|.+. .+....|++.+++.
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~--------- 169 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSG-LSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY--------- 169 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCC-CCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc---------
Confidence 00000 0000 00000 0000 0 0000 0012389999999986 23344455554421
Q ss_pred EEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCC
Q 005024 470 TTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPL 549 (718)
Q Consensus 470 ~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~ 549 (718)
-..++.+|+++|+..-.. .+++.+.+||.-..+ .++|+
T Consensus 170 ---~~~~v~vI~i~~~~~~~~----------~l~~~~~s~~~~~~i-----------------------------~f~py 207 (394)
T PRK00411 170 ---PGARIGVIGISSDLTFLY----------ILDPRVKSVFRPEEI-----------------------------YFPPY 207 (394)
T ss_pred ---CCCeEEEEEEECCcchhh----------hcCHHHHhcCCccee-----------------------------ecCCC
Confidence 012678899999763111 356666677632221 35677
Q ss_pred CHHHHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 005024 550 EPAILRAYISAARR--L-SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDV 626 (718)
Q Consensus 550 ~~~~l~~~i~~~~~--~-~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv 626 (718)
+.++++.++...-. + ...+++++.+.+.+.... ..|++|.+..+++.|...|..++++.|+.+||
T Consensus 208 ~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~------------~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v 275 (394)
T PRK00411 208 TADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAR------------EHGDARVAIDLLRRAGLIAEREGSRKVTEEDV 275 (394)
T ss_pred CHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHH------------hcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Confidence 77777777765432 2 235899999998886421 36789999999999988998888899999999
Q ss_pred HHHHHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHH----HHHcCCCH---HHHHHHHHHHH
Q 005024 627 DEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNW----ISRKGYSE---AQLKECLEEYA 699 (718)
Q Consensus 627 ~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~----~~~~g~~~---~~~~~~l~~l~ 699 (718)
..|+..+..+..... .... ......++.+|...... +...++.+++++. |+..|+++ .++++.+.+|.
T Consensus 276 ~~a~~~~~~~~~~~~--~~~L--~~~~k~~L~ai~~~~~~-~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~ 350 (394)
T PRK00411 276 RKAYEKSEIVHLSEV--LRTL--PLHEKLLLRAIVRLLKK-GGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLD 350 (394)
T ss_pred HHHHHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHHhc-CCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHH
Confidence 999987744322111 1111 12223455555544432 3235777888765 56678855 99999999999
Q ss_pred hcCeEEEe
Q 005024 700 ALNVWQIH 707 (718)
Q Consensus 700 ~~g~i~~~ 707 (718)
..|+|...
T Consensus 351 ~~glI~~~ 358 (394)
T PRK00411 351 MLGIINTR 358 (394)
T ss_pred hcCCeEEE
Confidence 99999864
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=99.57 E-value=2.2e-14 Score=152.36 Aligned_cols=201 Identities=20% Similarity=0.179 Sum_probs=131.9
Q ss_pred cccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeec
Q 005024 337 EIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRD 416 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (718)
+++|++.+...|...+.++..+ |+||+||||||||++|+++++.+....+. .....+.++..+.
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~~~------------~lll~Gp~G~GKTtla~~la~~l~~~~~~----~~~~eln~sd~~~ 77 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGNMP------------NLILSGPPGTGKTTSILALAHELLGPNYK----EAVLELNASDDRG 77 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCCCc------------eEEEECCCCCCHHHHHHHHHHHHhcccCc----cceeeeccccccc
Confidence 6789999888877666655432 89999999999999999999886211000 0000111111110
Q ss_pred c--ccc---ceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCC
Q 005024 417 N--VTN---EMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYD 491 (718)
Q Consensus 417 ~--~~g---~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~ 491 (718)
. ... .+......+......+++|||+|.|+...|.+|++.||.- +..+.+|.++|...
T Consensus 78 ~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~---- 140 (319)
T PLN03025 78 IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-------------SNTTRFALACNTSS---- 140 (319)
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-------------cCCceEEEEeCCcc----
Confidence 0 000 0000000001123569999999999999999999999841 23455777888654
Q ss_pred CCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCH
Q 005024 492 LRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPR 570 (718)
Q Consensus 492 ~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~ 570 (718)
.+.++|.||+..+ .+.+++.+.+.+++....+ ..-.+++
T Consensus 141 ---------~i~~~L~SRc~~i-------------------------------~f~~l~~~~l~~~L~~i~~~egi~i~~ 180 (319)
T PLN03025 141 ---------KIIEPIQSRCAIV-------------------------------RFSRLSDQEILGRLMKVVEAEKVPYVP 180 (319)
T ss_pred ---------ccchhHHHhhhcc-------------------------------cCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 6788999998332 3566777888888876543 3447899
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 571 ELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 571 ~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
++.+.|... ..++.|.+.+.+..+. . +...|+.++|....
T Consensus 181 ~~l~~i~~~---------------~~gDlR~aln~Lq~~~--~---~~~~i~~~~v~~~~ 220 (319)
T PLN03025 181 EGLEAIIFT---------------ADGDMRQALNNLQATH--S---GFGFVNQENVFKVC 220 (319)
T ss_pred HHHHHHHHH---------------cCCCHHHHHHHHHHHH--h---cCCCCCHHHHHHHc
Confidence 999999874 5789999999998432 1 34579988887643
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.6e-13 Score=146.00 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=143.5
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCce----eecC
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGV----YTTG 401 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~ 401 (718)
+++....-+.+++||+.+...|..++..+... | +||+||||||||++|+.+++.+.... ..||
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~------------ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKSGKIG------------HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 33334444458999999999988888876422 4 79999999999999999999874321 1122
Q ss_pred CCCCC----CcceeeE-eeccc--ccce---eeecceE---eeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCC
Q 005024 402 RGSSG----VGLTAAV-QRDNV--TNEM---VLEGGAL---VLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAG 468 (718)
Q Consensus 402 ~~~~~----~~l~~~~-~~~~~--~g~~---~~~~g~l---~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g 468 (718)
...+. .+....+ ..+.. .|.- .+..... ......|++|||+++|+.+.+++|+..||+.
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-------- 148 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-------- 148 (484)
T ss_pred CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC--------
Confidence 11100 0000000 00110 0000 0000000 1123359999999999999999999999862
Q ss_pred eEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCC
Q 005024 469 ITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTP 548 (718)
Q Consensus 469 ~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 548 (718)
+.++.+|.++|... .++++++|||..+. +.+
T Consensus 149 -----p~~viFILaTte~~-------------kI~~TI~SRCq~~~-------------------------------f~~ 179 (484)
T PRK14956 149 -----PAHIVFILATTEFH-------------KIPETILSRCQDFI-------------------------------FKK 179 (484)
T ss_pred -----CCceEEEeecCChh-------------hccHHHHhhhheee-------------------------------ecC
Confidence 34566776666544 79999999994332 456
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 005024 549 LEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD 627 (718)
Q Consensus 549 ~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 627 (718)
++.+.+.+++..... ....+++++.+.|.+. ..|++|.+.+++..+.+.+ ...|+.++|.
T Consensus 180 ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~---------------S~Gd~RdAL~lLeq~i~~~----~~~it~~~V~ 240 (484)
T PRK14956 180 VPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK---------------GDGSVRDMLSFMEQAIVFT----DSKLTGVKIR 240 (484)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCChHHHHHHHHHHHHHhC----CCCcCHHHHH
Confidence 777888888887654 3346899999999985 5799999999998665542 3469999998
Q ss_pred HHHH
Q 005024 628 EALR 631 (718)
Q Consensus 628 ~ai~ 631 (718)
+++.
T Consensus 241 ~~lg 244 (484)
T PRK14956 241 KMIG 244 (484)
T ss_pred HHhC
Confidence 7764
No 75
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.6e-14 Score=150.68 Aligned_cols=190 Identities=22% Similarity=0.237 Sum_probs=122.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec-CCCCCC--CcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT-GRGSSG--VGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~-~~~~~~--~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
.|||+||||||||+|||++|..+.-.+|.+ |.-... +|.-+.-+|+-+... -. ....|+||||||....
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aA-------k~-~APcIIFIDEiDavG~ 410 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAA-------KA-RAPCIIFIDEIDAVGG 410 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHH-------Hh-cCCeEEEEechhhhcc
Confidence 599999999999999999999998776653 322211 122222222221110 00 0246999999998732
Q ss_pred ----HHH----HHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEec
Q 005024 448 ----SDR----TAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLIL 517 (718)
Q Consensus 448 ----~~~----~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~ 517 (718)
.++ ..|++.|-+ . +|- +-+..+.||||+|.+. .|++||++ |||..+.+
T Consensus 411 kR~~~~~~y~kqTlNQLLvE----m--DGF--~qNeGiIvigATNfpe-------------~LD~AL~RPGRFD~~v~V- 468 (752)
T KOG0734|consen 411 KRNPSDQHYAKQTLNQLLVE----M--DGF--KQNEGIIVIGATNFPE-------------ALDKALTRPGRFDRHVTV- 468 (752)
T ss_pred cCCccHHHHHHHHHHHHHHH----h--cCc--CcCCceEEEeccCChh-------------hhhHHhcCCCccceeEec-
Confidence 222 223333321 0 132 3356889999999887 79999998 99988754
Q ss_pred cCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCccc
Q 005024 518 DRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYT 597 (718)
Q Consensus 518 d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~ 597 (718)
+.||..-..+|.++.++.. .+++++--.++. +...+.
T Consensus 469 p~PDv~GR~eIL~~yl~ki------------------------------~~~~~VD~~iiA-------------RGT~GF 505 (752)
T KOG0734|consen 469 PLPDVRGRTEILKLYLSKI------------------------------PLDEDVDPKIIA-------------RGTPGF 505 (752)
T ss_pred CCCCcccHHHHHHHHHhcC------------------------------CcccCCCHhHhc-------------cCCCCC
Confidence 7787766666644433211 122222212221 235567
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 598 TVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 598 s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
+.-.|++|+..|...|..++...|+..|++.|-.-+
T Consensus 506 sGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 506 SGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRI 541 (752)
T ss_pred chHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhhe
Confidence 788999999999999999999999999999886543
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.7e-13 Score=151.98 Aligned_cols=210 Identities=20% Similarity=0.236 Sum_probs=140.8
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCcee----ecCCCCCCC---
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGVY----TTGRGSSGV--- 407 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~~----~~~~~~~~~--- 407 (718)
.+|+||+.+++.|..++.+|... | +||+|++|||||++++.+++.+..... .||...+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~------------HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLH------------HAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHh
Confidence 48899999999999988877432 4 489999999999999999998742110 121100000
Q ss_pred -c-ceeeEeecccc--cce----eeec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCce
Q 005024 408 -G-LTAAVQRDNVT--NEM----VLEG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNART 477 (718)
Q Consensus 408 -~-l~~~~~~~~~~--g~~----~~~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~ 477 (718)
| ....+..+..+ |.- .++. .....+...|++|||+++|+...+++|+..||+- +.++
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~v 150 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPHV 150 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-------------CCCe
Confidence 0 00001111110 000 0000 0011234579999999999999999999999862 3466
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAY 557 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 557 (718)
.||.+||... .|+.+++||| ..| .|.+++.+.+.++
T Consensus 151 ~FILaTtd~~-------------KIp~TIrSRC-q~f------------------------------~Fk~Ls~eeIv~~ 186 (830)
T PRK07003 151 KFILATTDPQ-------------KIPVTVLSRC-LQF------------------------------NLKQMPAGHIVSH 186 (830)
T ss_pred EEEEEECChh-------------hccchhhhhe-EEE------------------------------ecCCcCHHHHHHH
Confidence 7777787655 7899999999 443 2566778888888
Q ss_pred HHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 558 ISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 558 i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
+..... ....+++++.+.|... ..|+.|...+++..+.+++ ...|+.++|...+...
T Consensus 187 L~~Il~~EgI~id~eAL~lIA~~---------------A~GsmRdALsLLdQAia~~----~~~It~~~V~~~LG~~ 244 (830)
T PRK07003 187 LERILGEERIAFEPQALRLLARA---------------AQGSMRDALSLTDQAIAYS----ANEVTETAVSGMLGAL 244 (830)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhc----cCCcCHHHHHHHhCCC
Confidence 877544 3446899999999885 5789999999987666543 3568888887766443
No 77
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=9.5e-14 Score=161.93 Aligned_cols=243 Identities=22% Similarity=0.332 Sum_probs=140.8
Q ss_pred HhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCC--CCCc
Q 005024 331 ARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS--SGVG 408 (718)
Q Consensus 331 ~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~--~~~~ 408 (718)
...+..+++|++.+|+.|+..|....... ..+|+ .++|+||||+|||++++.+++.+++.++....+. ....
T Consensus 317 ~~~l~~~~~g~~~vK~~i~~~l~~~~~~~-----~~~g~-~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~ 390 (784)
T PRK10787 317 QEILDTDHYGLERVKDRILEYLAVQSRVN-----KIKGP-ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAE 390 (784)
T ss_pred HHHhhhhccCHHHHHHHHHHHHHHHHhcc-----cCCCc-eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 34466689999999999985554321111 12333 5999999999999999999999887765432211 1111
Q ss_pred ceeeEeecccccceeeecceEe------eecCCeeeecccccCChHH----HHHHHHhhcc-cEEEEeeCCeEEEec-Cc
Q 005024 409 LTAAVQRDNVTNEMVLEGGALV------LADMGICAIDEFDKMDESD----RTAIHEVMEQ-QTVSIAKAGITTSLN-AR 476 (718)
Q Consensus 409 l~~~~~~~~~~g~~~~~~g~l~------~a~~gil~iDEi~~~~~~~----~~~L~~~me~-~~i~i~k~g~~~~l~-~~ 476 (718)
+.+.. ..+.|. .+|.+. ...+.+++|||+|+++++. +++|+++|+. +.....-......++ .+
T Consensus 391 i~g~~--~~~~g~---~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 391 IRGHR--RTYIGS---MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hccch--hccCCC---CCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 11111 001111 122221 1245699999999998775 4899999975 333332111222222 57
Q ss_pred eEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 005024 477 TAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRA 556 (718)
Q Consensus 477 ~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~ 556 (718)
+.+|||+|.. .+++||++||+++- + ...+.++-..|+++.+. ...+++
T Consensus 466 v~~i~TaN~~--------------~i~~aLl~R~~ii~-~-~~~t~eek~~Ia~~~L~----------------~k~~~~ 513 (784)
T PRK10787 466 VMFVATSNSM--------------NIPAPLLDRMEVIR-L-SGYTEDEKLNIAKRHLL----------------PKQIER 513 (784)
T ss_pred eEEEEcCCCC--------------CCCHHHhcceeeee-c-CCCCHHHHHHHHHHhhh----------------HHHHHH
Confidence 8999999864 69999999997543 3 33334444444443221 011111
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHH-HHHHHHH---hcCC---CCccHHHHHHH
Q 005024 557 YISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILR-ISAALAR---LRFS---ETVAQSDVDEA 629 (718)
Q Consensus 557 ~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lir-la~a~A~---l~~~---~~V~~~dv~~a 629 (718)
. ........+++++.+.|++.|. ....+|.|+.++. +++..+. +... -.|+.+++.+.
T Consensus 514 ~--~l~~~~l~i~~~ai~~ii~~yt-------------~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~ 578 (784)
T PRK10787 514 N--ALKKGELTVDDSAIIGIIRYYT-------------REAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDY 578 (784)
T ss_pred h--CCCCCeEEECHHHHHHHHHhCC-------------cccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHH
Confidence 1 0011234689999999998662 2344676666653 2222221 1211 25888888877
Q ss_pred HH
Q 005024 630 LR 631 (718)
Q Consensus 630 i~ 631 (718)
+.
T Consensus 579 lg 580 (784)
T PRK10787 579 LG 580 (784)
T ss_pred hC
Confidence 65
No 78
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=5.4e-13 Score=148.26 Aligned_cols=209 Identities=18% Similarity=0.187 Sum_probs=139.5
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce----eecCCCCCCCcc--
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV----YTTGRGSSGVGL-- 409 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~~~~~~~~l-- 409 (718)
.+++|++.+++.|..++..|... . .+||+||||||||++|+.+|+.+.... ..||...+...+
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~---H--------AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLH---H--------AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC---e--------EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence 48999999999999999877422 1 469999999999999999999874210 012211100000
Q ss_pred ---eeeEeeccc--cccee----eecc--eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 410 ---TAAVQRDNV--TNEMV----LEGG--ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 410 ---~~~~~~~~~--~g~~~----~~~g--~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
..-..-+.. .+... +... .-..+...|++|||+++|+...+++|+..||+. +..+.
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-------------P~~v~ 150 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-------------PEHVK 150 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-------------CCCcE
Confidence 000000100 01000 0000 001123469999999999999999999999852 23456
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYI 558 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i 558 (718)
+|.++|... .++.+++|||..+ .+.+++.+.+.+++
T Consensus 151 FILaTtd~~-------------kIp~TIlSRCq~f-------------------------------eFkpLs~eEI~k~L 186 (702)
T PRK14960 151 FLFATTDPQ-------------KLPITVISRCLQF-------------------------------TLRPLAVDEITKHL 186 (702)
T ss_pred EEEEECChH-------------hhhHHHHHhhhee-------------------------------eccCCCHHHHHHHH
Confidence 666666443 6788999999433 35678888888888
Q ss_pred HHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 559 SAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 559 ~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
..... ....+++++...|... ..|++|.+.+++..+.+. +...|+.++|...+.
T Consensus 187 ~~Il~kEgI~id~eAL~~IA~~---------------S~GdLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 187 GAILEKEQIAADQDAIWQIAES---------------AQGSLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 77654 3457999999999885 579999999998755442 457799999988765
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=9.8e-13 Score=150.40 Aligned_cols=206 Identities=20% Similarity=0.203 Sum_probs=140.0
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCcccccccee-eecCCCcchHHHHHHHHHHHCCCcee----ecCCCCCC---
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHI-CLMGDPGVAKSQLLKHIINVAPRGVY----TTGRGSSG--- 406 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~v-Ll~G~pGtGKt~la~~i~~~~~~~~~----~~~~~~~~--- 406 (718)
+.+|+||+.++..|..++..|... |. ||+||||||||++|+.+++.+..... .||...+.
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~------------HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLH------------HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCC------------eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 348999999999998888877532 65 89999999999999999998853211 12211100
Q ss_pred -Ccceee-Eeeccc--cc---------ceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEe
Q 005024 407 -VGLTAA-VQRDNV--TN---------EMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSL 473 (718)
Q Consensus 407 -~~l~~~-~~~~~~--~g---------~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l 473 (718)
.+...- ...+.. .+ .....+ ..+...|++|||+++|+.+.+++|+..||+-
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P---~~gk~KViIIDEAh~LT~eAqNALLKtLEEP------------- 146 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP---SRGRFKVYLIDEVHMLSRSSFNALLKTLEEP------------- 146 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhh---hcCCcEEEEEechHhcCHHHHHHHHHHHhcc-------------
Confidence 000000 000110 01 000111 1134569999999999999999999999962
Q ss_pred cCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHH
Q 005024 474 NARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAI 553 (718)
Q Consensus 474 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 553 (718)
+..+.+|.++|... .|.++++||| ..| .+.+++.+.
T Consensus 147 P~~vrFILaTTe~~-------------kLl~TIlSRC-q~f------------------------------~fkpLs~eE 182 (944)
T PRK14949 147 PEHVKFLLATTDPQ-------------KLPVTVLSRC-LQF------------------------------NLKSLTQDE 182 (944)
T ss_pred CCCeEEEEECCCch-------------hchHHHHHhh-eEE------------------------------eCCCCCHHH
Confidence 34566666666544 6889999999 443 367788999
Q ss_pred HHHHHHHHHhc-CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 554 LRAYISAARRL-SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 554 l~~~i~~~~~~-~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+..|+..+... ...+++++.+.|..+ ..|++|.+.+++..+.+. ....++.++|.+.+.
T Consensus 183 I~~~L~~il~~EgI~~edeAL~lIA~~---------------S~Gd~R~ALnLLdQala~----~~~~It~~~V~~llG 242 (944)
T PRK14949 183 IGTQLNHILTQEQLPFEAEALTLLAKA---------------ANGSMRDALSLTDQAIAF----GGGQVMLTQVQTMLG 242 (944)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHh----cCCcccHHHHHHHhC
Confidence 99998876543 446899999999885 579999999998765543 345688777776654
No 80
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.1e-12 Score=139.42 Aligned_cols=209 Identities=17% Similarity=0.156 Sum_probs=137.3
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCce-e---ecCCCCCC---
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGV-Y---TTGRGSSG--- 406 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~-~---~~~~~~~~--- 406 (718)
..+|+||+.+++.+..++..|... | +||+||||+|||++|+.+++.+.-.. + .||...+.
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~------------h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIH------------HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCC------------eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 348999999999999888876432 5 58999999999999999998874210 0 01110000
Q ss_pred -CcceeeEe-ecccc--ccee----eecc--eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCc
Q 005024 407 -VGLTAAVQ-RDNVT--NEMV----LEGG--ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNAR 476 (718)
Q Consensus 407 -~~l~~~~~-~~~~~--g~~~----~~~g--~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~ 476 (718)
.+...... -++.+ +... .... .-..++..+++|||+++|+...+++|+..||+. +..
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-------------~~~ 149 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PQH 149 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-------------CCC
Confidence 00000000 01000 0000 0000 001234569999999999999999999999862 234
Q ss_pred eEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 005024 477 TAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRA 556 (718)
Q Consensus 477 ~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~ 556 (718)
+.+|.++|... .+++++.||+ ..+ .+.+++.+.+.+
T Consensus 150 ~~fIl~t~~~~-------------~l~~tI~SRc-~~~------------------------------~~~~l~~~el~~ 185 (363)
T PRK14961 150 IKFILATTDVE-------------KIPKTILSRC-LQF------------------------------KLKIISEEKIFN 185 (363)
T ss_pred eEEEEEcCChH-------------hhhHHHHhhc-eEE------------------------------eCCCCCHHHHHH
Confidence 55565555333 5889999999 333 256788888888
Q ss_pred HHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 557 YISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 557 ~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
++....+ ....+++++.+.+... ..+++|.+.+++..+.+. +...|+.++|.+++.
T Consensus 186 ~L~~~~~~~g~~i~~~al~~ia~~---------------s~G~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 186 FLKYILIKESIDTDEYALKLIAYH---------------AHGSMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8877544 3446899999998885 468999999988765443 467899999988775
No 81
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.52 E-value=3e-14 Score=137.87 Aligned_cols=221 Identities=21% Similarity=0.252 Sum_probs=129.9
Q ss_pred hhcCCcccccHHHHHHHHHHH--hCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcc
Q 005024 332 RSLAPEIYGHEDIKKALLLLL--VGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGL 409 (718)
Q Consensus 332 ~si~p~i~g~~~~k~~i~~~l--~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l 409 (718)
+....+++||+++|+...+.+ .... ..+.-=.+-|||++||||||||++|++++..+.-+++..- +..|
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenP-----e~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vk----at~l 187 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENP-----ERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVK----ATEL 187 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhCh-----HHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEec----hHHH
Confidence 445678999999987643322 2111 0000001119999999999999999999998865544321 1123
Q ss_pred eeeEeecccccceeeec--ceEeeecCCeeeecccccCChH------------HHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 410 TAAVQRDNVTNEMVLEG--GALVLADMGICAIDEFDKMDES------------DRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 410 ~~~~~~~~~~g~~~~~~--g~l~~a~~gil~iDEi~~~~~~------------~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
.+..+.+ |...+.. -.-..+...|+||||+|.+.-+ ..++|+.-|+ |+. -+.
T Consensus 188 iGehVGd---gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD---------gi~--ene 253 (368)
T COG1223 188 IGEHVGD---GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD---------GIK--ENE 253 (368)
T ss_pred HHHHhhh---HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc---------Ccc--cCC
Confidence 3222222 1111100 0001223579999999986432 3367777775 433 345
Q ss_pred ceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHH
Q 005024 476 RTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILR 555 (718)
Q Consensus 476 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~ 555 (718)
.+..|||||.+. -|++++.|||.--+-+ -.|+.++...|.+.
T Consensus 254 GVvtIaaTN~p~-------------~LD~aiRsRFEeEIEF-~LP~~eEr~~ile~------------------------ 295 (368)
T COG1223 254 GVVTIAATNRPE-------------LLDPAIRSRFEEEIEF-KLPNDEERLEILEY------------------------ 295 (368)
T ss_pred ceEEEeecCChh-------------hcCHHHHhhhhheeee-eCCChHHHHHHHHH------------------------
Confidence 678899999886 7999999999643221 33544444333222
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 556 AYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTL-LSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 556 ~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l-~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
+++.+.-.+... .+++... ....|.|.+ +.+++.|--.|-.++++.|+.+|+..|+.-
T Consensus 296 ----y~k~~Plpv~~~-~~~~~~~--------------t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 296 ----YAKKFPLPVDAD-LRYLAAK--------------TKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred ----HHHhCCCccccC-HHHHHHH--------------hCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 233321112222 2233321 245666764 567788877888889999999999999874
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=9.1e-13 Score=146.93 Aligned_cols=209 Identities=20% Similarity=0.204 Sum_probs=140.3
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCc----eeecCCCCCCCcc-
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRG----VYTTGRGSSGVGL- 409 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~----~~~~~~~~~~~~l- 409 (718)
.+|+||+.+++.|..++..+... | +||+||||||||++|+.+++.+.-. ...||...+...+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~------------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLH------------HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCC------------eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 48999999999999999877532 5 6999999999999999999987321 1112221110000
Q ss_pred ----eeeEeeccc--cccee----eec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCce
Q 005024 410 ----TAAVQRDNV--TNEMV----LEG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNART 477 (718)
Q Consensus 410 ----~~~~~~~~~--~g~~~----~~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~ 477 (718)
..-...+.. .+... ++. -.-..+...|++|||+++|+.+.+++|+..||+- |..+
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~~~ 150 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-------------PSHV 150 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-------------CCCe
Confidence 000011110 11000 000 0011234569999999999999999999999952 4566
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAY 557 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 557 (718)
.+|.+||... .++.+++||+ ..| .+.+++.+.+.++
T Consensus 151 ~fIlattd~~-------------kl~~tI~SRc-~~~------------------------------~f~~l~~~~i~~~ 186 (509)
T PRK14958 151 KFILATTDHH-------------KLPVTVLSRC-LQF------------------------------HLAQLPPLQIAAH 186 (509)
T ss_pred EEEEEECChH-------------hchHHHHHHh-hhh------------------------------hcCCCCHHHHHHH
Confidence 6776666443 6888899999 332 2566778888888
Q ss_pred HHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 558 ISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 558 i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
+...-+ ....+++++.+.|.+. ..|++|.+.+++.-+.+. +...|+.+||...+..
T Consensus 187 l~~il~~egi~~~~~al~~ia~~---------------s~GslR~al~lLdq~ia~----~~~~It~~~V~~~lg~ 243 (509)
T PRK14958 187 CQHLLKEENVEFENAALDLLARA---------------ANGSVRDALSLLDQSIAY----GNGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH---------------cCCcHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCC
Confidence 776544 3446899999988875 468999999999765443 4568999999987654
No 83
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.7e-13 Score=144.70 Aligned_cols=270 Identities=15% Similarity=0.177 Sum_probs=169.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc------eee-cCCCCCCCcceeeEe----ecccccceeeec-----ceEe-eec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG------VYT-TGRGSSGVGLTAAVQ----RDNVTNEMVLEG-----GALV-LAD 433 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~------~~~-~~~~~~~~~l~~~~~----~~~~~g~~~~~~-----g~l~-~a~ 433 (718)
|++++|+||||||.+++++.+.+... +|. |-...+.......+. .-+.+|.-..+. ..+. ...
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~ 123 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGK 123 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCC
Confidence 79999999999999999999887332 333 222211111111100 111122110000 0000 111
Q ss_pred CCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
.-|++|||+|.|....+..|........- + ..++.+|+.+|...-.. .+++.+.||+...
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~~~-----~-----~~~v~vi~i~n~~~~~~----------~ld~rv~s~l~~~ 183 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAPGE-----N-----KVKVSIIAVSNDDKFLD----------YLDPRVKSSLGPS 183 (366)
T ss_pred eEEEEEcchhhhccccchHHHHHHhhccc-----c-----ceeEEEEEEeccHHHHH----------HhhhhhhhccCcc
Confidence 23899999999987755555555432110 1 45788999999663122 4666666666322
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHHhhHhhhhc
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR--L-SPCVPRELEEYIAAAYSNIRQEEAKS 590 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~-~p~ls~~~~~~l~~~y~~lr~~~~~~ 590 (718)
- ..|+|++.++|..++..... + ...+++++.+++.....+
T Consensus 184 ~-----------------------------I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~-------- 226 (366)
T COG1474 184 E-----------------------------IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAA-------- 226 (366)
T ss_pred e-----------------------------eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH--------
Confidence 2 24899999999999987655 3 457999999998876532
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCC
Q 005024 591 NTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKL 670 (718)
Q Consensus 591 ~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 670 (718)
..|++|.+..++|.|..+|.-+++..|+++|+..|...+......-.....+. ++ ..++.++.... .
T Consensus 227 ----~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~--~~--ki~L~~i~~~~-----~ 293 (366)
T COG1474 227 ----ESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVLKTLPL--HQ--KIVLLAIVELT-----V 293 (366)
T ss_pred ----cCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCH--hH--HHHHHHHHHhc-----C
Confidence 45699999999999999999999999999999999665554432211111111 11 22334444332 2
Q ss_pred cccHHHHHHH----HHHcCCCHHHHHHHHHHHHhcCeEEEeCCe
Q 005024 671 DVSYAHALNW----ISRKGYSEAQLKECLEEYAALNVWQIHPHT 710 (718)
Q Consensus 671 ~~~~~~l~~~----~~~~g~~~~~~~~~l~~l~~~g~i~~~~~~ 710 (718)
.++.+++++. ++..+.+..++.+.+.+|...|++.....+
T Consensus 294 ~~~~~~~y~~y~~~~~~~~~~~~~~~~ii~~L~~lgiv~~~~~~ 337 (366)
T COG1474 294 EISTGELYDVYESLCERLRTSQRRFSDIISELEGLGIVSASLIS 337 (366)
T ss_pred CCChHHHHHHHHHHHhhhCchHHHHHHHHHHHHhcCeEEeeecc
Confidence 3444555544 566677888999999999999999876554
No 84
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.51 E-value=2.5e-14 Score=136.29 Aligned_cols=113 Identities=17% Similarity=0.251 Sum_probs=82.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---ee--ecCCCCCC---CcceeeEeecccccceeeecceEeeecCCeeeeccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VY--TTGRGSSG---VGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEF 442 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~--~~~~~~~~---~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi 442 (718)
+|||+|++||||+.+|++||..++|. +. .|+..+.. ..|.+. ....++|......|.+..|++|++|||||
T Consensus 24 pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~-~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I 102 (168)
T PF00158_consen 24 PVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH-EKGAFTGARSDKKGLLEQANGGTLFLDEI 102 (168)
T ss_dssp -EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB-CSSSSTTTSSEBEHHHHHTTTSEEEEETG
T ss_pred CEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc-ccccccccccccCCceeeccceEEeecch
Confidence 89999999999999999999998764 22 24433211 112222 12223444456779999999999999999
Q ss_pred ccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 443 DKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 443 ~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
+.|++..|..|+++|+++.+... |.....+.+++||+|+|.+
T Consensus 103 ~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 103 EDLPPELQAKLLRVLEEGKFTRL--GSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp GGS-HHHHHHHHHHHHHSEEECC--TSSSEEE--EEEEEEESS-
T ss_pred hhhHHHHHHHHHHHHhhchhccc--cccccccccceEEeecCcC
Confidence 99999999999999999988765 6566778899999999977
No 85
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.50 E-value=9.7e-13 Score=144.62 Aligned_cols=197 Identities=21% Similarity=0.316 Sum_probs=127.8
Q ss_pred cccccHHHHH---HHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE
Q 005024 337 EIYGHEDIKK---ALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV 413 (718)
Q Consensus 337 ~i~g~~~~k~---~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~ 413 (718)
+++|++.+.. .+...+.++... |++|+||||||||++|+.+++.+...+......... . ..
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~------------~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~--~--~~ 76 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLS------------SMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG--V--KD 76 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCc------------eEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc--H--HH
Confidence 7889988743 355555554322 899999999999999999999876544332211110 0 00
Q ss_pred eecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEe--CCCCCCCC
Q 005024 414 QRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAA--NPAWGRYD 491 (718)
Q Consensus 414 ~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~--Np~~g~~~ 491 (718)
.+..... .. .......++++||||+++++...+..|+..||++.+ .+|+++ ||..
T Consensus 77 ir~ii~~---~~-~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~i---------------ilI~att~n~~~---- 133 (413)
T PRK13342 77 LREVIEE---AR-QRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTI---------------TLIGATTENPSF---- 133 (413)
T ss_pred HHHHHHH---HH-HhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcE---------------EEEEeCCCChhh----
Confidence 0000000 00 000112467999999999999999999999987543 345444 3333
Q ss_pred CCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-c--C-CC
Q 005024 492 LRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-L--S-PC 567 (718)
Q Consensus 492 ~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~--~-p~ 567 (718)
.++++|+|||.. +. +.+++.+.+..++..+.. . . ..
T Consensus 134 ---------~l~~aL~SR~~~-~~------------------------------~~~ls~e~i~~lL~~~l~~~~~~~i~ 173 (413)
T PRK13342 134 ---------EVNPALLSRAQV-FE------------------------------LKPLSEEDIEQLLKRALEDKERGLVE 173 (413)
T ss_pred ---------hccHHHhcccee-eE------------------------------eCCCCHHHHHHHHHHHHHHhhcCCCC
Confidence 688999999943 32 234555555555554322 1 1 25
Q ss_pred CCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 568 VPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 568 ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
+++++.+.|..+ .++++|.+.+++..+... ...|+.+++.+++..
T Consensus 174 i~~~al~~l~~~---------------s~Gd~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 174 LDDEALDALARL---------------ANGDARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred CCHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 888988888775 478999999999876543 567999999988864
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.50 E-value=7.4e-13 Score=152.56 Aligned_cols=204 Identities=19% Similarity=0.221 Sum_probs=125.8
Q ss_pred cccccHHHHH---HHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE
Q 005024 337 EIYGHEDIKK---ALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV 413 (718)
Q Consensus 337 ~i~g~~~~k~---~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~ 413 (718)
+++|++.+.. .+..++.++... |++|+||||||||++|+++++.....+....... .++. .
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~------------slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~--~~i~--d 92 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVG------------SLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL--AGVK--D 92 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCc------------eEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh--hhhH--H
Confidence 7889998753 343444444321 8999999999999999999988654322211100 0110 0
Q ss_pred eecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCC
Q 005024 414 QRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLR 493 (718)
Q Consensus 414 ~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~ 493 (718)
.+..... .....-....++++||||++.++...|.+|+..||++.+ .+|+++++... +
T Consensus 93 ir~~i~~---a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~I---------------iLI~aTTenp~-~--- 150 (725)
T PRK13341 93 LRAEVDR---AKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTI---------------TLIGATTENPY-F--- 150 (725)
T ss_pred HHHHHHH---HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceE---------------EEEEecCCChH-h---
Confidence 0000000 000000012356999999999999999999999987643 34555543210 1
Q ss_pred CCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh--------cC
Q 005024 494 RTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR--------LS 565 (718)
Q Consensus 494 ~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--------~~ 565 (718)
.++++++||+.++. +++++.+.+...+..+.. ..
T Consensus 151 -------~l~~aL~SR~~v~~-------------------------------l~pLs~edi~~IL~~~l~~~~~~~g~~~ 192 (725)
T PRK13341 151 -------EVNKALVSRSRLFR-------------------------------LKSLSDEDLHQLLKRALQDKERGYGDRK 192 (725)
T ss_pred -------hhhhHhhcccccee-------------------------------cCCCCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 68899999985432 344455555555544322 12
Q ss_pred CCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCC--CCccHHHHHHHHH
Q 005024 566 PCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFS--ETVAQSDVDEALR 631 (718)
Q Consensus 566 p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~--~~V~~~dv~~ai~ 631 (718)
..+++++.+.|.++ .++++|++.++++.+...+..... ..|+.+++.+++.
T Consensus 193 v~I~deaL~~La~~---------------s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 193 VDLEPEAEKHLVDV---------------ANGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred cCCCHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHH
Confidence 46899999999985 489999999999987654432222 2378888887765
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=9.8e-13 Score=145.85 Aligned_cols=211 Identities=17% Similarity=0.190 Sum_probs=138.1
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCce---------eecCCCC
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGV---------YTTGRGS 404 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~---------~~~~~~~ 404 (718)
+.+|+||+.+++.|..++..|... | +||+|++|||||++++.+++.+.-.. ..||...
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLp------------HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLH------------HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCc------------eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 348999999999999999877533 5 59999999999999999999874210 0011110
Q ss_pred CCCcc-----eeeEeeccc--cccee----eec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEE
Q 005024 405 SGVGL-----TAAVQRDNV--TNEMV----LEG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITT 471 (718)
Q Consensus 405 ~~~~l-----~~~~~~~~~--~g~~~----~~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~ 471 (718)
+...+ ......+.. .|.-. ++. -.-......|++|||+++|+...+++|+..||+-
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP----------- 151 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP----------- 151 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-----------
Confidence 00000 000000100 00000 000 0001123469999999999999999999999962
Q ss_pred EecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCH
Q 005024 472 SLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEP 551 (718)
Q Consensus 472 ~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 551 (718)
+.++.||.+||... .|.+.++|||- .| .+.+++.
T Consensus 152 --P~~v~FILaTtep~-------------kLlpTIrSRCq-~f------------------------------~f~~ls~ 185 (700)
T PRK12323 152 --PEHVKFILATTDPQ-------------KIPVTVLSRCL-QF------------------------------NLKQMPP 185 (700)
T ss_pred --CCCceEEEEeCChH-------------hhhhHHHHHHH-hc------------------------------ccCCCCh
Confidence 34566777777554 78999999993 33 2556777
Q ss_pred HHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 552 AILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 552 ~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
+.+.+++...-. ....+++++.+.|... ..|++|...+++..+.+. +...|+.++|.+.+
T Consensus 186 eei~~~L~~Il~~Egi~~d~eAL~~IA~~---------------A~Gs~RdALsLLdQaia~----~~~~It~~~V~~~L 246 (700)
T PRK12323 186 GHIVSHLDAILGEEGIAHEVNALRLLAQA---------------AQGSMRDALSLTDQAIAY----SAGNVSEEAVRGML 246 (700)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHh----ccCCcCHHHHHHHh
Confidence 778877776543 3346788888888774 579999999998755443 33568888888776
Q ss_pred HHH
Q 005024 631 RLM 633 (718)
Q Consensus 631 ~l~ 633 (718)
...
T Consensus 247 G~~ 249 (700)
T PRK12323 247 GAI 249 (700)
T ss_pred CCC
Confidence 544
No 88
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.7e-13 Score=137.41 Aligned_cols=239 Identities=21% Similarity=0.218 Sum_probs=134.9
Q ss_pred cccccHHHHHHHHHHHhCCc-cccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAP-HRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~-~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
+|.|..++|+-|.-+.+-.- .+....|. .|.+-.||++||||||||+||++++......+|+.... .|+...
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss----tltSKw-- 285 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS----TLTSKW-- 285 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh----hhhhhh--
Confidence 78899888776554432111 11112221 23334699999999999999999999987666553221 121111
Q ss_pred cccccce-eeecceEeee---cCCeeeecccccCC------------hHHHHHHHHhhcccEEEEeeCCeEEEec--Cce
Q 005024 416 DNVTNEM-VLEGGALVLA---DMGICAIDEFDKMD------------ESDRTAIHEVMEQQTVSIAKAGITTSLN--ART 477 (718)
Q Consensus 416 ~~~~g~~-~~~~g~l~~a---~~gil~iDEi~~~~------------~~~~~~L~~~me~~~i~i~k~g~~~~l~--~~~ 477 (718)
.|+- .+..-.+.+| ...++||||||.+- ....+.|+--|+ |...++. ..+
T Consensus 286 ---RGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD---------G~~~t~e~~k~V 353 (491)
T KOG0738|consen 286 ---RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD---------GVQGTLENSKVV 353 (491)
T ss_pred ---ccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh---------ccccccccceeE
Confidence 1110 0111122223 35799999999872 223455666665 3333332 358
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAY 557 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 557 (718)
.|+||||-++ +|++||++||.-- ++...|+.+....+.+..+... ...+++..+.|-..
T Consensus 354 mVLAATN~PW-------------diDEAlrRRlEKR-IyIPLP~~~~R~~Li~~~l~~~-------~~~~~~~~~~lae~ 412 (491)
T KOG0738|consen 354 MVLAATNFPW-------------DIDEALRRRLEKR-IYIPLPDAEARSALIKILLRSV-------ELDDPVNLEDLAER 412 (491)
T ss_pred EEEeccCCCc-------------chHHHHHHHHhhh-eeeeCCCHHHHHHHHHHhhccc-------cCCCCccHHHHHHH
Confidence 8999999998 8999999999654 3448899988888776655432 12233444433322
Q ss_pred HHHHHhcCCCCCHHHHHHH-HHH-HHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 558 ISAARRLSPCVPRELEEYI-AAA-YSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 558 i~~~~~~~p~ls~~~~~~l-~~~-y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
.. .+|.+-+..+ .+. ...||+.- ...++|++..+ |+-....-|+.+|+++|++-+..
T Consensus 413 ~e-------GySGaDI~nvCreAsm~~mRR~i-------~g~~~~ei~~l-------akE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 413 SE-------GYSGADITNVCREASMMAMRRKI-------AGLTPREIRQL-------AKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred hc-------CCChHHHHHHHHHHHHHHHHHHH-------hcCCcHHhhhh-------hhhccccccchhhHHHHHHHcCc
Confidence 11 2232222111 111 12234321 34455555332 33334466999999999987654
Q ss_pred h
Q 005024 636 S 636 (718)
Q Consensus 636 ~ 636 (718)
+
T Consensus 472 S 472 (491)
T KOG0738|consen 472 S 472 (491)
T ss_pred C
Confidence 4
No 89
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=6.7e-12 Score=140.99 Aligned_cols=211 Identities=21% Similarity=0.225 Sum_probs=141.2
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce----eecCCCCCC----C
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV----YTTGRGSSG----V 407 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~~~~~~----~ 407 (718)
.+|+|++.+++.|..++..+... . .+||+||+|+|||++|+.+++.+.... ..||...+. .
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~---H--------a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~ 84 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLH---H--------AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA 84 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCC---e--------EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhc
Confidence 38999999999999888876422 1 479999999999999999999863211 012211000 0
Q ss_pred c-ceeeEeeccc--ccce----eeec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 408 G-LTAAVQRDNV--TNEM----VLEG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 408 ~-l~~~~~~~~~--~g~~----~~~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
| .......+.. .|.- .+.. -.-..+...|++|||+++|+...+++|+..||+. +..+.
T Consensus 85 g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~~v~ 151 (709)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVK 151 (709)
T ss_pred cCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-------------CCCcE
Confidence 0 0000000100 1100 0000 0001234579999999999999999999999852 34566
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYI 558 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i 558 (718)
+|.++|... .++.+++||| +.| .+.+++.+.+..++
T Consensus 152 fILaTtd~~-------------kL~~TIrSRC-~~f------------------------------~f~~Ls~eeI~~~L 187 (709)
T PRK08691 152 FILATTDPH-------------KVPVTVLSRC-LQF------------------------------VLRNMTAQQVADHL 187 (709)
T ss_pred EEEEeCCcc-------------ccchHHHHHH-hhh------------------------------hcCCCCHHHHHHHH
Confidence 777776544 6888999999 322 35668888888888
Q ss_pred HHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 559 SAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 559 ~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
...-. ....+++++...|.+. ..|++|.+.+++..+.+. +...|+.++|...+...
T Consensus 188 ~~Il~kEgi~id~eAL~~Ia~~---------------A~GslRdAlnLLDqaia~----g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 188 AHVLDSEKIAYEPPALQLLGRA---------------AAGSMRDALSLLDQAIAL----GSGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHcCCCcCHHHHHHHHHH---------------hCCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHccc
Confidence 77654 3446899999999885 479999999999766554 35679999999876543
No 90
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.46 E-value=1.6e-12 Score=131.46 Aligned_cols=146 Identities=21% Similarity=0.238 Sum_probs=114.8
Q ss_pred CCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
.||+||||.++|+-+..+.|+++||+-- -..+|.|+|.-..+-.... +..-..+|..||||. |+
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~--------------aPIii~AtNRG~~kiRGTd-~~sPhGIP~DlLDRl-lI 355 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL--------------APIIILATNRGMTKIRGTD-IESPHGIPLDLLDRL-LI 355 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc--------------CcEEEEEcCCceeeecccC-CcCCCCCCHhhhhhe-eE
Confidence 5899999999999999999999999632 1346778887632221111 233347999999998 55
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCC
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNT 592 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~ 592 (718)
+. ..|++.++++.++....+ ..-.++++|.++|...
T Consensus 356 I~------------------------------t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~i------------- 392 (450)
T COG1224 356 IS------------------------------TRPYSREEIREIIRIRAKEEDIELSDDALEYLTDI------------- 392 (450)
T ss_pred Ee------------------------------cCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhh-------------
Confidence 43 466888899998886544 4557999999999885
Q ss_pred CCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccc
Q 005024 593 PHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFS 639 (718)
Q Consensus 593 ~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~ 639 (718)
....|.|...+|+.-|.-+|+.+++..|..+||++|-.+|...+.+
T Consensus 393 -g~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~krS 438 (450)
T COG1224 393 -GEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDVKRS 438 (450)
T ss_pred -chhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhhHHHH
Confidence 4667899999999999999999999999999999999998766554
No 91
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.45 E-value=6.3e-13 Score=156.74 Aligned_cols=245 Identities=22% Similarity=0.304 Sum_probs=139.8
Q ss_pred HHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCC--C
Q 005024 328 NKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS--S 405 (718)
Q Consensus 328 ~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~--~ 405 (718)
..+...+..+++|++.+|..|.-.+........ .++. ++||+||||||||++|+++++.+.+.++....+. .
T Consensus 312 ~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-----~~~~-~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~ 385 (775)
T TIGR00763 312 KRAKEILDEDHYGLKKVKERILEYLAVQKLRGK-----MKGP-ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRD 385 (775)
T ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-----CCCc-eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCccc
Confidence 345566778899999999998865543211111 1222 6999999999999999999999877665432211 1
Q ss_pred CCcceeeEeecccccceeeecce----Ee--eecCCeeeecccccCChHHH----HHHHHhhcc---cEEEEeeCCeEEE
Q 005024 406 GVGLTAAVQRDNVTNEMVLEGGA----LV--LADMGICAIDEFDKMDESDR----TAIHEVMEQ---QTVSIAKAGITTS 472 (718)
Q Consensus 406 ~~~l~~~~~~~~~~g~~~~~~g~----l~--~a~~gil~iDEi~~~~~~~~----~~L~~~me~---~~i~i~k~g~~~~ 472 (718)
...+.+. +..+.|. .+|. +. ...+.+++|||||++.++.+ ++|+++|+. +.+.-...+....
T Consensus 386 ~~~i~g~--~~~~~g~---~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 386 EAEIRGH--RRTYVGA---MPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred HHHHcCC--CCceeCC---CCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceec
Confidence 1111110 0000010 0111 11 12456999999999976543 789999974 2222211122222
Q ss_pred ecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHH
Q 005024 473 LNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPA 552 (718)
Q Consensus 473 l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 552 (718)
+ .++.+|+|+|+.. .++++|++||+++. ...++.++...|++..+
T Consensus 461 ~-s~v~~I~TtN~~~-------------~i~~~L~~R~~vi~--~~~~~~~e~~~I~~~~l------------------- 505 (775)
T TIGR00763 461 L-SKVIFIATANSID-------------TIPRPLLDRMEVIE--LSGYTEEEKLEIAKKYL------------------- 505 (775)
T ss_pred c-CCEEEEEecCCch-------------hCCHHHhCCeeEEe--cCCCCHHHHHHHHHHHH-------------------
Confidence 2 4788999999875 79999999997542 34455545554443221
Q ss_pred HHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHH-HHHHHHH--hc-CC-------
Q 005024 553 ILRAYISAARRL---SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILR-ISAALAR--LR-FS------- 618 (718)
Q Consensus 553 ~l~~~i~~~~~~---~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lir-la~a~A~--l~-~~------- 618 (718)
+.+.+.. ... .-.+++++...|++.|. ....+|.|+..+. +....|+ +. +.
T Consensus 506 -~~~~~~~-~~l~~~~~~~~~~~l~~i~~~~~-------------~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~ 570 (775)
T TIGR00763 506 -IPKALED-HGLKPDELKITDEALLLLIKYYT-------------REAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAE 570 (775)
T ss_pred -HHHHHHH-cCCCcceEEECHHHHHHHHHhcC-------------hhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcc
Confidence 1111111 011 12589999999988762 2345666666553 2222222 11 11
Q ss_pred -CCccHHHHHHHHHHH
Q 005024 619 -ETVAQSDVDEALRLM 633 (718)
Q Consensus 619 -~~V~~~dv~~ai~l~ 633 (718)
-.|+.+++...+..-
T Consensus 571 ~v~i~~~~~~~~lg~~ 586 (775)
T TIGR00763 571 SVVITPDNLKKYLGKP 586 (775)
T ss_pred cccCCHHHHHHhcCcc
Confidence 368888887776543
No 92
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.3e-12 Score=151.22 Aligned_cols=237 Identities=16% Similarity=0.218 Sum_probs=143.6
Q ss_pred hHHHHHHhhcCCcccccHHHHHHHHHHHhC---C-ccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 325 DIYNKLARSLAPEIYGHEDIKKALLLLLVG---A-PHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 325 ~~~~~l~~si~p~i~g~~~~k~~i~~~l~~---~-~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
+.+..+.+.+...|+||+.++..|..++.. | .....+.| ++||+||||||||.+|+.+|+.+...+...
T Consensus 447 ~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~-------~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i 519 (758)
T PRK11034 447 DTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVG-------SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_pred HHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcc-------eEEEECCCCCCHHHHHHHHHHHhCCCcEEe
Confidence 355678888999999999998888766642 2 11111222 799999999999999999999986554332
Q ss_pred CCCC--C---CCcceeeEeecccccceeeecceEe----eecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEE
Q 005024 401 GRGS--S---GVGLTAAVQRDNVTNEMVLEGGALV----LADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITT 471 (718)
Q Consensus 401 ~~~~--~---~~~l~~~~~~~~~~g~~~~~~g~l~----~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~ 471 (718)
.... . ...+.++. ..+.| ....|.+. ....+|++||||++++++.++.|+++|++|.++.. .|...
T Consensus 520 d~se~~~~~~~~~LiG~~--~gyvg--~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~-~g~~v 594 (758)
T PRK11034 520 DMSEYMERHTVSRLIGAP--PGYVG--FDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN-NGRKA 594 (758)
T ss_pred echhhcccccHHHHcCCC--CCccc--ccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC-CCcee
Confidence 2110 0 00111100 00001 01122222 22468999999999999999999999999998864 34333
Q ss_pred EecCceEEEEEeCCCC--------CCCCCCC---Ccch--hcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccC
Q 005024 472 SLNARTAVLSAANPAW--------GRYDLRR---TPAE--NINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQN 538 (718)
Q Consensus 472 ~l~~~~~viaa~Np~~--------g~~~~~~---~~~~--~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~ 538 (718)
.+ .++.+|+|+|... | |.... ...+ .-.++++|++|+|.++.+ .+.+.+.-.+|+...+.
T Consensus 595 d~-rn~iiI~TsN~g~~~~~~~~~g-~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f-~~L~~~~l~~I~~~~l~---- 667 (758)
T PRK11034 595 DF-RNVVLVMTTNAGVRETERKSIG-LIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWF-DHLSTDVIHQVVDKFIV---- 667 (758)
T ss_pred cC-CCcEEEEeCCcCHHHHhhcccC-cccchhhHHHHHHHHHhcCHHHHccCCEEEEc-CCCCHHHHHHHHHHHHH----
Confidence 22 4678999999441 1 11100 0001 135899999999987765 44444444445443221
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHH
Q 005024 539 KESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILR 607 (718)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lir 607 (718)
.+.+.+. .+.+.-.+++++.++|.+.- ......+|.|.++|+
T Consensus 668 --------------~~~~~l~-~~~i~l~~~~~~~~~l~~~~------------~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 668 --------------ELQAQLD-QKGVSLEVSQEARDWLAEKG------------YDRAMGARPMARVIQ 709 (758)
T ss_pred --------------HHHHHHH-HCCCCceECHHHHHHHHHhC------------CCCCCCCchHHHHHH
Confidence 1222221 12245568999999988631 123456788888875
No 93
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.1e-11 Score=137.32 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=142.5
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce--------eecCCCCCCC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV--------YTTGRGSSGV 407 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~--------~~~~~~~~~~ 407 (718)
.+++||+.+++.+..++..+.. +. ++||+||||||||++|+.+++.+.... ..|+...+..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri---~~--------a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~ 89 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRL---AG--------GYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCI 89 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC---Cc--------eEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHH
Confidence 3789999999999888877642 11 799999999999999999999874321 1111111000
Q ss_pred cce----ee-Eeeccc--cccee-------eecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEe
Q 005024 408 GLT----AA-VQRDNV--TNEMV-------LEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSL 473 (718)
Q Consensus 408 ~l~----~~-~~~~~~--~g~~~-------~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l 473 (718)
.+. .. ..-+.. +|.-. ....+ ..++..|++|||+++|+...+++|+..||+.
T Consensus 90 ~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P-~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep------------- 155 (507)
T PRK06645 90 SFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP-LQGKHKIFIIDEVHMLSKGAFNALLKTLEEP------------- 155 (507)
T ss_pred HHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc-ccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------
Confidence 000 00 000110 11000 00011 2346789999999999999999999999852
Q ss_pred cCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHH
Q 005024 474 NARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAI 553 (718)
Q Consensus 474 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 553 (718)
+..+.+|.+++... .++.++.+|+ ..+ .+.+++.+.
T Consensus 156 p~~~vfI~aTte~~-------------kI~~tI~SRc-~~~------------------------------ef~~ls~~e 191 (507)
T PRK06645 156 PPHIIFIFATTEVQ-------------KIPATIISRC-QRY------------------------------DLRRLSFEE 191 (507)
T ss_pred CCCEEEEEEeCChH-------------HhhHHHHhcc-eEE------------------------------EccCCCHHH
Confidence 44666776666443 6888999999 333 245677888
Q ss_pred HHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 554 LRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 554 l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
+..++....+ ....+++++.+.|... ..+++|.+.+++..+.+++.- ....||.+||...+..
T Consensus 192 l~~~L~~i~~~egi~ie~eAL~~Ia~~---------------s~GslR~al~~Ldkai~~~~~-~~~~It~~~V~~llg~ 255 (507)
T PRK06645 192 IFKLLEYITKQENLKTDIEALRIIAYK---------------SEGSARDAVSILDQAASMSAK-SDNIISPQVINQMLGL 255 (507)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHCC
Confidence 8888877654 3446899999998874 478999999999877666531 1347999999987654
Q ss_pred H
Q 005024 633 M 633 (718)
Q Consensus 633 ~ 633 (718)
.
T Consensus 256 ~ 256 (507)
T PRK06645 256 V 256 (507)
T ss_pred C
Confidence 3
No 94
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.43 E-value=1.3e-12 Score=141.94 Aligned_cols=194 Identities=18% Similarity=0.192 Sum_probs=120.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEee---ecCCeeeecccccCC-
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVL---ADMGICAIDEFDKMD- 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~---a~~gil~iDEi~~~~- 446 (718)
+|||+||||||||++|+++++.+...++..... .+....... +...+ ...+.. ...+|+||||+|.+.
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~----~l~~~~~g~---~~~~i-~~~f~~a~~~~p~IlfiDEiD~l~~ 238 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS----ELVQKFIGE---GARLV-RELFELAREKAPSIIFIDEIDAIAA 238 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHhCCCEEEeehH----HHhHhhccc---hHHHH-HHHHHHHHhcCCeEEEEechhhhhc
Confidence 799999999999999999999886654432111 111000000 00000 001111 135799999999872
Q ss_pred ----------hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEE
Q 005024 447 ----------ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLW 514 (718)
Q Consensus 447 ----------~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~ 514 (718)
...+..+.+.+.+-. |.. -..++.||||+|... .+++++++ |||..+
T Consensus 239 ~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~VI~aTn~~~-------------~ld~allRpgRfd~~I 297 (389)
T PRK03992 239 KRTDSGTSGDREVQRTLMQLLAEMD------GFD--PRGNVKIIAATNRID-------------ILDPAILRPGRFDRII 297 (389)
T ss_pred ccccCCCCccHHHHHHHHHHHHhcc------ccC--CCCCEEEEEecCChh-------------hCCHHHcCCccCceEE
Confidence 344555666654311 110 123678999999875 79999996 999875
Q ss_pred EeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHhhHhhhhcCCC
Q 005024 515 LILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPR-ELEEYIAAAYSNIRQEEAKSNTP 593 (718)
Q Consensus 515 ~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~-~~~~~l~~~y~~lr~~~~~~~~~ 593 (718)
.+ +.|+.+...+|.+..+. .. .++. ...+.+...
T Consensus 298 ~v-~~P~~~~R~~Il~~~~~----------------------------~~--~~~~~~~~~~la~~-------------- 332 (389)
T PRK03992 298 EV-PLPDEEGRLEILKIHTR----------------------------KM--NLADDVDLEELAEL-------------- 332 (389)
T ss_pred EE-CCCCHHHHHHHHHHHhc----------------------------cC--CCCCcCCHHHHHHH--------------
Confidence 44 77776666555332211 11 1111 112222221
Q ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcc
Q 005024 594 HSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKF 638 (718)
Q Consensus 594 ~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~ 638 (718)
....+.+.+..+++.|...|--+.+..|+.+|+.+|+..+..+..
T Consensus 333 t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 333 TEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence 346788999999999999988788889999999999998876543
No 95
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1.2e-11 Score=136.94 Aligned_cols=209 Identities=17% Similarity=0.193 Sum_probs=139.3
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCcccccccee-eecCCCcchHHHHHHHHHHHCCC----ceeecCCCCCC---
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHI-CLMGDPGVAKSQLLKHIINVAPR----GVYTTGRGSSG--- 406 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~v-Ll~G~pGtGKt~la~~i~~~~~~----~~~~~~~~~~~--- 406 (718)
..+++||+.+++.+..++..|... |+ ||+||||+|||++|+.+++.+.. ....||...+.
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~------------hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~ 80 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLA------------HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA 80 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCC------------eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 348999999999999999877532 55 89999999999999999988621 10011110000
Q ss_pred -CcceeeEe-ecccc--ccee----eecc--eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCc
Q 005024 407 -VGLTAAVQ-RDNVT--NEMV----LEGG--ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNAR 476 (718)
Q Consensus 407 -~~l~~~~~-~~~~~--g~~~----~~~g--~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~ 476 (718)
.+....+. .+..+ |.-. .+.. .-..+...|++|||+++|+.+.+++|+..||+- |..
T Consensus 81 ~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-------------p~~ 147 (535)
T PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-------------PSY 147 (535)
T ss_pred hhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-------------CCc
Confidence 00000000 00000 0000 0000 111245679999999999999999999999952 345
Q ss_pred eEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 005024 477 TAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRA 556 (718)
Q Consensus 477 ~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~ 556 (718)
+.+|.++|... .+++++.||+. .+ .+.+++.+.+.+
T Consensus 148 t~FIL~ttd~~-------------kL~~tI~SRc~-~~------------------------------~F~~Ls~~ei~~ 183 (535)
T PRK08451 148 VKFILATTDPL-------------KLPATILSRTQ-HF------------------------------RFKQIPQNSIIS 183 (535)
T ss_pred eEEEEEECChh-------------hCchHHHhhce-eE------------------------------EcCCCCHHHHHH
Confidence 66666665443 78999999984 33 256677888888
Q ss_pred HHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 557 YISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 557 ~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
++....+ ....+++++.+.|... ..|++|.+.+++..+.+.+ ...||.++|.+.+.
T Consensus 184 ~L~~Il~~EGi~i~~~Al~~Ia~~---------------s~GdlR~alnlLdqai~~~----~~~It~~~V~~~lg 240 (535)
T PRK08451 184 HLKTILEKEGVSYEPEALEILARS---------------GNGSLRDTLTLLDQAIIYC----KNAITESKVADMLG 240 (535)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH---------------cCCcHHHHHHHHHHHHHhc----CCCCCHHHHHHHhC
Confidence 8876544 3346899999999885 5689999999998766554 45789999887654
No 96
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.43 E-value=1.3e-12 Score=144.32 Aligned_cols=218 Identities=17% Similarity=0.118 Sum_probs=131.2
Q ss_pred CcccccHHHHHHHHHH--HhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCccee--
Q 005024 336 PEIYGHEDIKKALLLL--LVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTA-- 411 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~--l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~-- 411 (718)
.+|.|++.+|.-+... .+.... ...|. +..-.|||+||||||||++|++++..+...++....+....++.+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~--~~~gl--~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGes 303 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQA--SNYGL--PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGES 303 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHH--HhcCC--CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChH
Confidence 3788999998776532 111000 00111 111269999999999999999999998766655322110001100
Q ss_pred -eEeecccccceeeecceEeeecCCeeeecccccCChH------------HHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 412 -AVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES------------DRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 412 -~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
...+.. +. .+ ....+.|+||||||++-.. ....++..|++. ..++.
T Consensus 304 e~~l~~~----f~-~A---~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~V~ 362 (489)
T CHL00195 304 ESRMRQM----IR-IA---EALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-------------KSPVF 362 (489)
T ss_pred HHHHHHH----HH-HH---HhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-------------CCceE
Confidence 000000 00 00 0124679999999976321 123455566431 24678
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRA 556 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~ 556 (718)
||||||... .+++++++ |||.++.+ +.|+.+....|.+..+..
T Consensus 363 vIaTTN~~~-------------~Ld~allR~GRFD~~i~v-~lP~~~eR~~Il~~~l~~--------------------- 407 (489)
T CHL00195 363 VVATANNID-------------LLPLEILRKGRFDEIFFL-DLPSLEEREKIFKIHLQK--------------------- 407 (489)
T ss_pred EEEecCChh-------------hCCHHHhCCCcCCeEEEe-CCcCHHHHHHHHHHHHhh---------------------
Confidence 999999876 79999997 99988765 888877776664443321
Q ss_pred HHHHHHhcCCC-CCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 557 YISAARRLSPC-VPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 557 ~i~~~~~~~p~-ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
..|. .++...+.+... ..+.|.+.++.++.-|...|..+. ..++.+|+..|+..+..
T Consensus 408 -------~~~~~~~~~dl~~La~~--------------T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 408 -------FRPKSWKKYDIKKLSKL--------------SNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLALKQFIP 465 (489)
T ss_pred -------cCCCcccccCHHHHHhh--------------cCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCC
Confidence 1111 112222333332 357788999999998887776554 46899999999976543
No 97
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.43 E-value=8.5e-13 Score=133.45 Aligned_cols=218 Identities=22% Similarity=0.345 Sum_probs=126.4
Q ss_pred cccccHHH--HHHHHHHHhCC-ccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceee
Q 005024 337 EIYGHEDI--KKALLLLLVGA-PHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAA 412 (718)
Q Consensus 337 ~i~g~~~~--k~~i~~~l~~~-~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~ 412 (718)
+.+||+.+ ..+++-.++.. .-+ .++|.||||||||+||+.++..+....|. .....+.++ ..
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ip------------SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~--t~ 204 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIP------------SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK--TN 204 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCC------------ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc--hH
Confidence 78888886 45666666543 222 69999999999999999999887544221 101111000 00
Q ss_pred EeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCC
Q 005024 413 VQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDL 492 (718)
Q Consensus 413 ~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~ 492 (718)
..|+.+... +.-......+-|+|||||++++...|..++...|.|.|++. |.+ |-||.+
T Consensus 205 dvR~ife~a---q~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lI--GAT-----------TENPSF----- 263 (554)
T KOG2028|consen 205 DVRDIFEQA---QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLI--GAT-----------TENPSF----- 263 (554)
T ss_pred HHHHHHHHH---HHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEE--ecc-----------cCCCcc-----
Confidence 112211000 00000112346999999999999999999999999877664 221 235555
Q ss_pred CCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCC--CCCH
Q 005024 493 RRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSP--CVPR 570 (718)
Q Consensus 493 ~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p--~ls~ 570 (718)
.+..+|+||| .+|++ .....+.-..|..+-+..-....++.. +++ .| .+++
T Consensus 264 --------qln~aLlSRC-~VfvL-ekL~~n~v~~iL~raia~l~dser~~~---~l~--------------n~s~~ve~ 316 (554)
T KOG2028|consen 264 --------QLNAALLSRC-RVFVL-EKLPVNAVVTILMRAIASLGDSERPTD---PLP--------------NSSMFVED 316 (554)
T ss_pred --------chhHHHHhcc-ceeEe-ccCCHHHHHHHHHHHHHhhccccccCC---CCC--------------CcchhhhH
Confidence 8999999999 56655 333333333333222211110000000 000 01 1455
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcC----CCCccHHHHHHHHH
Q 005024 571 ELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRF----SETVAQSDVDEALR 631 (718)
Q Consensus 571 ~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~----~~~V~~~dv~~ai~ 631 (718)
.+++++.+. ..|++|...+.+.++.+.+-.+. +..++.+||.+++.
T Consensus 317 siidyla~l---------------sdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq 366 (554)
T KOG2028|consen 317 SIIDYLAYL---------------SDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQ 366 (554)
T ss_pred HHHHHHHHh---------------cCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHh
Confidence 555665553 57889999999998855443333 34689999999875
No 98
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.4e-11 Score=138.64 Aligned_cols=218 Identities=20% Similarity=0.165 Sum_probs=143.4
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCce----eecC
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGV----YTTG 401 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~ 401 (718)
|++....-+.+|+||+.+++.|..++..|... | +||+||+|||||++|+.+++.+.-.. -.||
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~------------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAGRIN------------HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 33344444568999999999999999887533 7 58999999999999999998864210 0122
Q ss_pred CCCCCCcc-------eeeEeecccc--cceeee----c--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEee
Q 005024 402 RGSSGVGL-------TAAVQRDNVT--NEMVLE----G--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAK 466 (718)
Q Consensus 402 ~~~~~~~l-------~~~~~~~~~~--g~~~~~----~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k 466 (718)
...+-..+ ......+..+ |.-.++ . -.-..++..|++|||+++|+.+.+++|+..||+
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE------- 144 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE------- 144 (584)
T ss_pred ccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-------
Confidence 11000000 0000111100 100000 0 001124667999999999999999999999996
Q ss_pred CCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCC
Q 005024 467 AGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGF 546 (718)
Q Consensus 467 ~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~ 546 (718)
.+..+.+|.+++... .+.+++.||+ ..| .|
T Consensus 145 ------pp~~~~fIL~tte~~-------------kll~TI~SRc-~~~------------------------------~F 174 (584)
T PRK14952 145 ------PPEHLIFIFATTEPE-------------KVLPTIRSRT-HHY------------------------------PF 174 (584)
T ss_pred ------CCCCeEEEEEeCChH-------------hhHHHHHHhc-eEE------------------------------Ee
Confidence 234556665555443 7899999998 333 24
Q ss_pred CCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHH
Q 005024 547 TPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSD 625 (718)
Q Consensus 547 ~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~d 625 (718)
.+++.+.+.+++..... ....+++++...|..+ ..+++|.+.+++....+.+ +...|+.++
T Consensus 175 ~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~---------------s~GdlR~aln~Ldql~~~~---~~~~It~~~ 236 (584)
T PRK14952 175 RLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA---------------GGGSPRDTLSVLDQLLAGA---ADTHVTYQR 236 (584)
T ss_pred eCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHhcc---CCCCcCHHH
Confidence 56777888888876544 3446899999988774 5789999999998654443 467899999
Q ss_pred HHHHHH
Q 005024 626 VDEALR 631 (718)
Q Consensus 626 v~~ai~ 631 (718)
|...+.
T Consensus 237 v~~llg 242 (584)
T PRK14952 237 ALGLLG 242 (584)
T ss_pred HHHHHC
Confidence 987754
No 99
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.42 E-value=4.8e-12 Score=134.94 Aligned_cols=273 Identities=16% Similarity=0.138 Sum_probs=162.3
Q ss_pred cccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE---
Q 005024 337 EIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV--- 413 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~--- 413 (718)
+++|++.++..+...+..+..+ |++|+||||||||++++++++.+....+. .....+..+.
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~~~------------~~ll~G~~G~GKt~~~~~l~~~l~~~~~~----~~~i~~~~~~~~~ 81 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKNMP------------HLLFAGPPGTGKTTAALALARELYGEDWR----ENFLELNASDERG 81 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCCCC------------eEEEECCCCCCHHHHHHHHHHHHcCCccc----cceEEeccccccc
Confidence 5779999998888877665422 79999999999999999999876321110 0000000000
Q ss_pred ---eecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCC
Q 005024 414 ---QRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRY 490 (718)
Q Consensus 414 ---~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~ 490 (718)
.++... .+ .....+..+...+++|||++.+..+.+..|++.|+.. +..+.+|.++|...
T Consensus 82 ~~~~~~~i~-~~-~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-------------~~~~~lIl~~~~~~--- 143 (319)
T PRK00440 82 IDVIRNKIK-EF-ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-------------SQNTRFILSCNYSS--- 143 (319)
T ss_pred hHHHHHHHH-HH-HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-------------CCCCeEEEEeCCcc---
Confidence 000000 00 0001111134569999999999998899999998742 22456677777543
Q ss_pred CCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCC
Q 005024 491 DLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVP 569 (718)
Q Consensus 491 ~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls 569 (718)
.+.+++.+|+..+ .+.+++.+.+.+++..... ....++
T Consensus 144 ----------~l~~~l~sr~~~~-------------------------------~~~~l~~~ei~~~l~~~~~~~~~~i~ 182 (319)
T PRK00440 144 ----------KIIDPIQSRCAVF-------------------------------RFSPLKKEAVAERLRYIAENEGIEIT 182 (319)
T ss_pred ----------ccchhHHHHhhee-------------------------------eeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 5677888998543 2455677777777766443 444689
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh-cccccccccccC
Q 005024 570 RELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS-KFSLYSDDRQRS 648 (718)
Q Consensus 570 ~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~-~~~~~~~~~~~~ 648 (718)
+++.+.+... ..+++|.+.+.++.+.+. ...||.++|..++...... ...+.+...
T Consensus 183 ~~al~~l~~~---------------~~gd~r~~~~~l~~~~~~-----~~~it~~~v~~~~~~~~~~~i~~l~~~~~--- 239 (319)
T PRK00440 183 DDALEAIYYV---------------SEGDMRKAINALQAAAAT-----GKEVTEEAVYKITGTARPEEIREMIELAL--- 239 (319)
T ss_pred HHHHHHHHHH---------------cCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHhCCCCHHHHHHHHHHHH---
Confidence 9999999874 468999999999755442 4679999999876432211 111110000
Q ss_pred ccchHHHHHHHHHHHHHhcCCCcc-cHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEeC
Q 005024 649 GLDAISDIYSILRDEAARSNKLDV-SYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHP 708 (718)
Q Consensus 649 ~~~~~~~i~~~i~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~ 708 (718)
.......+..+.+++...+.... -...+...+-..+++...+.+.++.+.+...-..+|
T Consensus 240 -~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~d~~~k~g 299 (319)
T PRK00440 240 -NGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEG 299 (319)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 01122344445555433321110 012222223336788888888888887665555444
No 100
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=5.4e-12 Score=140.57 Aligned_cols=206 Identities=17% Similarity=0.188 Sum_probs=137.7
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCcee----ecCCCCC-----
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGVY----TTGRGSS----- 405 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~~----~~~~~~~----- 405 (718)
.+++||+.++..+..++..|... | +||+||||+|||++|+.+++.+..... .||...+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~------------ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVH------------HAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 38899999999999888776422 4 789999999999999999987642100 0111100
Q ss_pred ---CCcceeeEeecc--cccce----eeec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEec
Q 005024 406 ---GVGLTAAVQRDN--VTNEM----VLEG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLN 474 (718)
Q Consensus 406 ---~~~l~~~~~~~~--~~g~~----~~~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~ 474 (718)
..++.. .+. ..|.- .+.. ..-..++..|++|||+++|+...+++|+..||+. |
T Consensus 84 ~~~~~dlie---idaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p 147 (546)
T PRK14957 84 NNSFIDLIE---IDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------P 147 (546)
T ss_pred cCCCCceEE---eecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-------------C
Confidence 001100 010 00000 0000 0012235679999999999999999999999963 3
Q ss_pred CceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHH
Q 005024 475 ARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAIL 554 (718)
Q Consensus 475 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l 554 (718)
..+.+|.+|+... .++.+++||+. ++. +.+++.+.+
T Consensus 148 ~~v~fIL~Ttd~~-------------kil~tI~SRc~-~~~------------------------------f~~Ls~~eI 183 (546)
T PRK14957 148 EYVKFILATTDYH-------------KIPVTILSRCI-QLH------------------------------LKHISQADI 183 (546)
T ss_pred CCceEEEEECChh-------------hhhhhHHHhee-eEE------------------------------eCCCCHHHH
Confidence 3455565555333 67888999994 332 466778888
Q ss_pred HHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 555 RAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 555 ~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
.+++...-. ....+++++.+.|... ..|++|.+.+++..+.+.+ + +.|+.++|++++..
T Consensus 184 ~~~L~~il~~egi~~e~~Al~~Ia~~---------------s~GdlR~alnlLek~i~~~---~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 184 KDQLKIILAKENINSDEQSLEYIAYH---------------AKGSLRDALSLLDQAISFC---G-GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhc---c-CCCCHHHHHHHHcc
Confidence 888877543 3457899999999885 4799999999998766543 2 67999999886543
No 101
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=8.9e-12 Score=138.79 Aligned_cols=219 Identities=17% Similarity=0.177 Sum_probs=141.7
Q ss_pred HHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc----eeecC
Q 005024 326 IYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG----VYTTG 401 (718)
Q Consensus 326 ~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~----~~~~~ 401 (718)
++++....-..+++||+.++..+.-++..|... . .+||+||||+|||++|+.+++.+.-. ...||
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~---h--------A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILNNKLT---H--------AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCC---c--------eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 334444444558999999999999888776422 1 48899999999999999999987311 11122
Q ss_pred CCCCC----Ccceee-Eeecccc--cceeee------cceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCC
Q 005024 402 RGSSG----VGLTAA-VQRDNVT--NEMVLE------GGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAG 468 (718)
Q Consensus 402 ~~~~~----~~l~~~-~~~~~~~--g~~~~~------~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g 468 (718)
...+. .+.... ..-+..+ |.-.++ ...-..++.+|++|||++.|+.+.+++|+..||+.
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-------- 146 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-------- 146 (605)
T ss_pred ccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC--------
Confidence 21100 000000 0001000 000000 00112245789999999999999999999999963
Q ss_pred eEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCC
Q 005024 469 ITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTP 548 (718)
Q Consensus 469 ~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 548 (718)
|..+.+|.+++... .+.++++|||..+ .+.+
T Consensus 147 -----p~~tvfIL~Tt~~~-------------KLl~TI~SRcq~i-------------------------------eF~~ 177 (605)
T PRK05896 147 -----PKHVVFIFATTEFQ-------------KIPLTIISRCQRY-------------------------------NFKK 177 (605)
T ss_pred -----CCcEEEEEECCChH-------------hhhHHHHhhhhhc-------------------------------ccCC
Confidence 33455565555333 6889999999433 3567
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 005024 549 LEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD 627 (718)
Q Consensus 549 ~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 627 (718)
++.+.+..++..... ....+++++.+.+... ..|++|.+.+++....+.+ + ..|+.++|.
T Consensus 178 Ls~~eL~~~L~~il~kegi~Is~eal~~La~l---------------S~GdlR~AlnlLekL~~y~---~-~~It~e~V~ 238 (605)
T PRK05896 178 LNNSELQELLKSIAKKEKIKIEDNAIDKIADL---------------ADGSLRDGLSILDQLSTFK---N-SEIDIEDIN 238 (605)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCcHHHHHHHHHHHHhhc---C-CCCCHHHHH
Confidence 888888888877544 3446899999988875 4688999999988654443 3 349999988
Q ss_pred HHHH
Q 005024 628 EALR 631 (718)
Q Consensus 628 ~ai~ 631 (718)
+++.
T Consensus 239 ellg 242 (605)
T PRK05896 239 KTFG 242 (605)
T ss_pred HHhc
Confidence 8654
No 102
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1.7e-11 Score=138.61 Aligned_cols=205 Identities=20% Similarity=0.215 Sum_probs=138.8
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCce----eecCCCC------
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGV----YTTGRGS------ 404 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~~~~------ 404 (718)
.+|+||+.++..|..++..|... | +||+|++|+|||++|+.+++.+.-.. ..||...
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~------------hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLH------------HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 48999999999999988877532 5 58999999999999999999874311 0122110
Q ss_pred -----CCCcceeeE------eecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEe
Q 005024 405 -----SGVGLTAAV------QRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSL 473 (718)
Q Consensus 405 -----~~~~l~~~~------~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l 473 (718)
....+.++. +++- .......+ ......|++|||+++|+...+++|+..||+-
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~l-i~~~~~~p---~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP------------- 146 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTREL-LDNVQYAP---ARGRFKVYLIDEVHMLSRHSFNALLKTLEEP------------- 146 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHH-HHHHHhhh---hcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------
Confidence 000011100 0000 00000111 1123459999999999999999999999962
Q ss_pred cCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHH
Q 005024 474 NARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAI 553 (718)
Q Consensus 474 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 553 (718)
|.++.+|.+|+... .++++++||| ..| .+.+++.+.
T Consensus 147 p~~v~FIL~Tt~~~-------------kLl~TI~SRC-~~~------------------------------~f~~Ls~~e 182 (647)
T PRK07994 147 PEHVKFLLATTDPQ-------------KLPVTILSRC-LQF------------------------------HLKALDVEQ 182 (647)
T ss_pred CCCeEEEEecCCcc-------------ccchHHHhhh-eEe------------------------------eCCCCCHHH
Confidence 34555666666444 7899999998 444 256788888
Q ss_pred HHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 554 LRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 554 l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
+..++..... ....+++++...|..+ ..|++|.+.+++..+.+. +...|+.++|...+..
T Consensus 183 i~~~L~~il~~e~i~~e~~aL~~Ia~~---------------s~Gs~R~Al~lldqaia~----~~~~it~~~v~~~lg~ 243 (647)
T PRK07994 183 IRQQLEHILQAEQIPFEPRALQLLARA---------------ADGSMRDALSLTDQAIAS----GNGQVTTDDVSAMLGT 243 (647)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcc
Confidence 8888887644 3346888988888875 579999999998755443 3456898888876653
No 103
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.3e-11 Score=139.14 Aligned_cols=205 Identities=20% Similarity=0.208 Sum_probs=137.0
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCcccccccee-eecCCCcchHHHHHHHHHHHCCCce---------eecCCC--
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHI-CLMGDPGVAKSQLLKHIINVAPRGV---------YTTGRG-- 403 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~v-Ll~G~pGtGKt~la~~i~~~~~~~~---------~~~~~~-- 403 (718)
.+++|++.++..|..++..+... |. ||+|++|||||++|+.+++.+.-.. ..||..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~------------ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLH------------HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 37899999999999998887532 54 9999999999999999998874210 001111
Q ss_pred ---------CCCCcceeeEeecccccce----eeec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCC
Q 005024 404 ---------SSGVGLTAAVQRDNVTNEM----VLEG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAG 468 (718)
Q Consensus 404 ---------~~~~~l~~~~~~~~~~g~~----~~~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g 468 (718)
.....+.++. ..|.- .++. -.-..+...|++|||+++|+...+++|+..||+.
T Consensus 84 C~~i~~g~h~D~~eldaas----~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-------- 151 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAAS----NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP-------- 151 (618)
T ss_pred HHHHHcCCCCceeecCccc----ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC--------
Confidence 0000111100 00000 0000 0001123569999999999999999999999862
Q ss_pred eEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCC
Q 005024 469 ITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTP 548 (718)
Q Consensus 469 ~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 548 (718)
+..+.+|.+|+... .++..++||+ ..| .+.+
T Consensus 152 -----P~~~~fIL~Ttd~~-------------kil~TIlSRc-~~~------------------------------~f~~ 182 (618)
T PRK14951 152 -----PEYLKFVLATTDPQ-------------KVPVTVLSRC-LQF------------------------------NLRP 182 (618)
T ss_pred -----CCCeEEEEEECCch-------------hhhHHHHHhc-eee------------------------------ecCC
Confidence 34556665665433 5788899999 444 2466
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 005024 549 LEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD 627 (718)
Q Consensus 549 ~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 627 (718)
++.+.+.+++...-. ..-.+++++.++|... ..|++|.+.+++..+.+. +...|+.++|.
T Consensus 183 Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~---------------s~GslR~al~lLdq~ia~----~~~~It~~~V~ 243 (618)
T PRK14951 183 MAPETVLEHLTQVLAAENVPAEPQALRLLARA---------------ARGSMRDALSLTDQAIAF----GSGQLQEAAVR 243 (618)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHh----cCCCcCHHHHH
Confidence 778888888876543 3446899999999885 578999999998655443 34679999999
Q ss_pred HHHHH
Q 005024 628 EALRL 632 (718)
Q Consensus 628 ~ai~l 632 (718)
+.+..
T Consensus 244 ~~Lg~ 248 (618)
T PRK14951 244 QMLGS 248 (618)
T ss_pred HHHcC
Confidence 87753
No 104
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3e-11 Score=136.65 Aligned_cols=218 Identities=20% Similarity=0.197 Sum_probs=142.1
Q ss_pred HHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCce----eec
Q 005024 326 IYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGV----YTT 400 (718)
Q Consensus 326 ~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~----~~~ 400 (718)
+|.+....-+.+++||+.++..+..++..+... | +||+||+|||||++|+.+++.+.-.. ..|
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~------------hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC 73 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQGKIS------------HAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPC 73 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 344444444558999999999999888876432 5 68899999999999999998863211 111
Q ss_pred CCCCCCC----c-ceeeEeeccccccee-----e-ec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeC
Q 005024 401 GRGSSGV----G-LTAAVQRDNVTNEMV-----L-EG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKA 467 (718)
Q Consensus 401 ~~~~~~~----~-l~~~~~~~~~~g~~~-----~-~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~ 467 (718)
|...+.. + .......+..++... + .. -.-..++..|++|||+++|+...+++|+..||+.
T Consensus 74 ~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep------- 146 (559)
T PRK05563 74 NECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP------- 146 (559)
T ss_pred CccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-------
Confidence 1111000 0 000011111110000 0 00 0012345679999999999999999999999853
Q ss_pred CeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCC
Q 005024 468 GITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFT 547 (718)
Q Consensus 468 g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~ 547 (718)
|..+.+|.+++... .++++++||+..+ .+.
T Consensus 147 ------p~~~ifIlatt~~~-------------ki~~tI~SRc~~~-------------------------------~f~ 176 (559)
T PRK05563 147 ------PAHVIFILATTEPH-------------KIPATILSRCQRF-------------------------------DFK 176 (559)
T ss_pred ------CCCeEEEEEeCChh-------------hCcHHHHhHheEE-------------------------------ecC
Confidence 34555565554333 6889999999443 255
Q ss_pred CCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 005024 548 PLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDV 626 (718)
Q Consensus 548 ~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv 626 (718)
+++.+.+..++....+ ....+++++.+.|... ..+++|.+.+++..+.+.+ .+.|+.+||
T Consensus 177 ~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~---------------s~G~~R~al~~Ldq~~~~~----~~~It~~~V 237 (559)
T PRK05563 177 RISVEDIVERLKYILDKEGIEYEDEALRLIARA---------------AEGGMRDALSILDQAISFG----DGKVTYEDA 237 (559)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhc----cCCCCHHHH
Confidence 6777788888876544 3446899999988885 4689999999998665542 467999999
Q ss_pred HHHHH
Q 005024 627 DEALR 631 (718)
Q Consensus 627 ~~ai~ 631 (718)
..++.
T Consensus 238 ~~vlg 242 (559)
T PRK05563 238 LEVTG 242 (559)
T ss_pred HHHhC
Confidence 88764
No 105
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.7e-13 Score=143.64 Aligned_cols=223 Identities=22% Similarity=0.270 Sum_probs=135.6
Q ss_pred cccccHHHHHHHHHHHhCCc-cccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAP-HRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~-~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
+|-|++++|+-+..+...+. .+....++-+...-.|||+||||||||++||++|..+...+... ++ .+|....+.
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv-kg---pEL~sk~vG 510 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV-KG---PELFSKYVG 510 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec-cC---HHHHHHhcC
Confidence 78889999998886664432 11111222222333699999999999999999999976554331 00 011111111
Q ss_pred cccccceeeec---ceEeeecCCeeeecccccCChH-----------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEE
Q 005024 416 DNVTNEMVLEG---GALVLADMGICAIDEFDKMDES-----------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLS 481 (718)
Q Consensus 416 ~~~~g~~~~~~---g~l~~a~~gil~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~via 481 (718)
+. +..+.. -+- .+...|+|+||||.+..+ ..+.|+.-|+ |.... .++.|||
T Consensus 511 eS---Er~ir~iF~kAR-~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD---------G~e~~--k~V~ViA 575 (693)
T KOG0730|consen 511 ES---ERAIREVFRKAR-QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD---------GLEAL--KNVLVIA 575 (693)
T ss_pred ch---HHHHHHHHHHHh-hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc---------ccccc--CcEEEEe
Confidence 11 000000 001 122379999999986332 3456666665 43332 4789999
Q ss_pred EeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 005024 482 AANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYIS 559 (718)
Q Consensus 482 a~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~ 559 (718)
|||.+. .|++||++ |||-++.+ +.||.+...+|.+.-
T Consensus 576 ATNRpd-------------~ID~ALlRPGRlD~iiyV-plPD~~aR~~Ilk~~--------------------------- 614 (693)
T KOG0730|consen 576 ATNRPD-------------MIDPALLRPGRLDRIIYV-PLPDLEARLEILKQC--------------------------- 614 (693)
T ss_pred ccCChh-------------hcCHHHcCCcccceeEee-cCccHHHHHHHHHHH---------------------------
Confidence 999987 89999999 99987654 778777665552221
Q ss_pred HHHhcCCCCCHH-HHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcC--CCCccHHHHHHHHHHHhhh
Q 005024 560 AARRLSPCVPRE-LEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRF--SETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 560 ~~~~~~p~ls~~-~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~--~~~V~~~dv~~ai~l~~~~ 636 (718)
+++. .++++ -.+.|+.. ....|.+.+..+.+-|...|-.+. ...|+.+|..+|+.....+
T Consensus 615 -~kkm--p~~~~vdl~~La~~--------------T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 615 -AKKM--PFSEDVDLEELAQA--------------TEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred -HhcC--CCCccccHHHHHHH--------------hccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccc
Confidence 2221 22222 23333332 346778899999998887774322 3458888888888766544
No 106
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.40 E-value=1.1e-11 Score=133.29 Aligned_cols=280 Identities=16% Similarity=0.109 Sum_probs=159.7
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc------eeecCCCCCCCc
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG------VYTTGRGSSGVG 408 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~------~~~~~~~~~~~~ 408 (718)
..+++|++.++..+..++..+..+ |+||+||||||||++|+++++.+... .+........ .
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~------------~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~-~ 80 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLP------------HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD-Q 80 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCc------------eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh-c
Confidence 346779999988888777655322 89999999999999999999876321 1111000000 0
Q ss_pred ceeeEeeccc-------------c--ccee----eecceE-eeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCC
Q 005024 409 LTAAVQRDNV-------------T--NEMV----LEGGAL-VLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAG 468 (718)
Q Consensus 409 l~~~~~~~~~-------------~--g~~~----~~~g~l-~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g 468 (718)
.......++. + ..+. ...+.. ..++.++++|||++.+++..+..|++.|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~-------- 152 (337)
T PRK12402 81 GKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY-------- 152 (337)
T ss_pred chhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc--------
Confidence 0000000000 0 0000 000000 1245679999999999999999999998752
Q ss_pred eEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCC
Q 005024 469 ITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTP 548 (718)
Q Consensus 469 ~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 548 (718)
+..+.+|.++|... .+.++|.+|+..+. +.+
T Consensus 153 -----~~~~~~Il~~~~~~-------------~~~~~L~sr~~~v~-------------------------------~~~ 183 (337)
T PRK12402 153 -----SRTCRFIIATRQPS-------------KLIPPIRSRCLPLF-------------------------------FRA 183 (337)
T ss_pred -----cCCCeEEEEeCChh-------------hCchhhcCCceEEE-------------------------------ecC
Confidence 12345565665332 46678889984332 345
Q ss_pred CCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 005024 549 LEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD 627 (718)
Q Consensus 549 ~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 627 (718)
++.+.+..++.... +....+++++.+.|..+ .++++|.+.+.+..+ + . ....||.+||.
T Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~---------------~~gdlr~l~~~l~~~---~-~-~~~~It~~~v~ 243 (337)
T PRK12402 184 PTDDELVDVLESIAEAEGVDYDDDGLELIAYY---------------AGGDLRKAILTLQTA---A-L-AAGEITMEAAY 243 (337)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHH---H-H-cCCCCCHHHHH
Confidence 56667777776543 34446999999999985 478999988877642 2 1 34579999999
Q ss_pred HHHHHHh--hhcccccccccccCccchHHHHHHHHHHHHHhcCCCc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeE
Q 005024 628 EALRLMQ--MSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLD-VSYAHALNWISRKGYSEAQLKECLEEYAALNVW 704 (718)
Q Consensus 628 ~ai~l~~--~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i 704 (718)
+++.... .....+.+.... .........+.++....|... .-...+...+... ++...+.++++.+.+..+-
T Consensus 244 ~~~~~~~~~~~i~~l~~ai~~----~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~l~~~d~~ 318 (337)
T PRK12402 244 EALGDVGTDEVIESLLDAAEA----GDFTDARKTLDDLLIDEGLSGGEVLEELLRVARSR-YRGDNLARLHRLAADADAR 318 (337)
T ss_pred HHhCCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHH
Confidence 8765321 111111111100 012334444555443333111 1122222233333 8888888888888776665
Q ss_pred EEeCC
Q 005024 705 QIHPH 709 (718)
Q Consensus 705 ~~~~~ 709 (718)
..+|.
T Consensus 319 lk~g~ 323 (337)
T PRK12402 319 LTDGA 323 (337)
T ss_pred HHcCC
Confidence 55553
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.5e-11 Score=134.36 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=143.1
Q ss_pred HHHHhhcCC----cccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCce-----
Q 005024 328 NKLARSLAP----EIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGV----- 397 (718)
Q Consensus 328 ~~l~~si~p----~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~----- 397 (718)
..++....| +|+||+.+++.|..++..|... | +||+||||+|||++|+.+++.+.-..
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~------------ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~ 71 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVG------------HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDA 71 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcc------------eeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcc
Confidence 344455555 8999999999998888877532 4 89999999999999999998873210
Q ss_pred -------eecCCCCC------CCcceeeEeeccc--ccceee----ecc--eEeeecCCeeeecccccCChHHHHHHHHh
Q 005024 398 -------YTTGRGSS------GVGLTAAVQRDNV--TNEMVL----EGG--ALVLADMGICAIDEFDKMDESDRTAIHEV 456 (718)
Q Consensus 398 -------~~~~~~~~------~~~l~~~~~~~~~--~g~~~~----~~g--~l~~a~~gil~iDEi~~~~~~~~~~L~~~ 456 (718)
-.||...+ ...+..... +.. .+.-.+ +.- .-..++..+++|||++.|+...++.|+..
T Consensus 72 ~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~-~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~ 150 (397)
T PRK14955 72 DYLQEVTEPCGECESCRDFDAGTSLNISEF-DAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKT 150 (397)
T ss_pred cccccCCCCCCCCHHHHHHhcCCCCCeEee-cccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHH
Confidence 01111100 000000000 100 000000 000 01234667999999999999999999999
Q ss_pred hcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhc
Q 005024 457 MEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVH 536 (718)
Q Consensus 457 me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~ 536 (718)
||+. +..+.+|.+++... .+.+++.+|+..+
T Consensus 151 LEep-------------~~~t~~Il~t~~~~-------------kl~~tl~sR~~~v----------------------- 181 (397)
T PRK14955 151 LEEP-------------PPHAIFIFATTELH-------------KIPATIASRCQRF----------------------- 181 (397)
T ss_pred HhcC-------------CCCeEEEEEeCChH-------------HhHHHHHHHHHHh-----------------------
Confidence 9852 23445555554322 6778899998432
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHh
Q 005024 537 QNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARL 615 (718)
Q Consensus 537 ~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l 615 (718)
.+.+++.+.+.+++....+ ....+++++.+.|... ..+++|.+.+.+..+.+++.-
T Consensus 182 --------~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~---------------s~g~lr~a~~~L~kl~~~~~~ 238 (397)
T PRK14955 182 --------NFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRK---------------AQGSMRDAQSILDQVIAFSVE 238 (397)
T ss_pred --------hcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhccc
Confidence 3567888888888876544 3446999999999985 578999999998876666531
Q ss_pred -cCCCCccHHHHHHHH
Q 005024 616 -RFSETVAQSDVDEAL 630 (718)
Q Consensus 616 -~~~~~V~~~dv~~ai 630 (718)
.....|+.+||.+++
T Consensus 239 ~~~~~~It~~~v~~~v 254 (397)
T PRK14955 239 SEGEGSIRYDKVAELL 254 (397)
T ss_pred cCCCCccCHHHHHHHH
Confidence 234589999998776
No 108
>CHL00176 ftsH cell division protein; Validated
Probab=99.39 E-value=2.6e-12 Score=146.23 Aligned_cols=225 Identities=23% Similarity=0.237 Sum_probs=125.7
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCC---CCcceee
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSS---GVGLTAA 412 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~---~~~l~~~ 412 (718)
.+|.|.+.+|..+...+.--...........+.+-++||+||||||||++|++++..+...++....... ..|....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~ 262 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAA 262 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHH
Confidence 4677888877665533211000000000011222379999999999999999999987655443211100 0000000
Q ss_pred EeecccccceeeecceEeeecCCeeeecccccCCh-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEE
Q 005024 413 VQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLS 481 (718)
Q Consensus 413 ~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~via 481 (718)
..++. +.. + ......|+||||+|.+.. ..+..|.+.+.+- +|. .-+.++.|||
T Consensus 263 ~vr~l------F~~-A-~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~------dg~--~~~~~ViVIa 326 (638)
T CHL00176 263 RVRDL------FKK-A-KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEM------DGF--KGNKGVIVIA 326 (638)
T ss_pred HHHHH------HHH-H-hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhh------ccc--cCCCCeeEEE
Confidence 00000 000 0 011246999999998732 2233344443221 011 1134688999
Q ss_pred EeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 005024 482 AANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYIS 559 (718)
Q Consensus 482 a~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~ 559 (718)
|||... .+++++++ |||..+.+ +.|+......|.+..+.
T Consensus 327 aTN~~~-------------~LD~ALlRpGRFd~~I~v-~lPd~~~R~~IL~~~l~------------------------- 367 (638)
T CHL00176 327 ATNRVD-------------ILDAALLRPGRFDRQITV-SLPDREGRLDILKVHAR------------------------- 367 (638)
T ss_pred ecCchH-------------hhhhhhhccccCceEEEE-CCCCHHHHHHHHHHHHh-------------------------
Confidence 999876 68899987 89987655 77777666655433221
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 560 AARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 560 ~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
. .+..++.....+... ....+.+.|.++++.|...|..+....|+.+|+.+|+.-+
T Consensus 368 ---~-~~~~~d~~l~~lA~~--------------t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 368 ---N-KKLSPDVSLELIARR--------------TPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred ---h-cccchhHHHHHHHhc--------------CCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 1 111122223333321 2335889999999888777767777889999999998755
No 109
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.5e-11 Score=136.83 Aligned_cols=215 Identities=20% Similarity=0.214 Sum_probs=139.8
Q ss_pred HHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCcccccccee-eecCCCcchHHHHHHHHHHHCCCc--e-eecCCC
Q 005024 328 NKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHI-CLMGDPGVAKSQLLKHIINVAPRG--V-YTTGRG 403 (718)
Q Consensus 328 ~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~v-Ll~G~pGtGKt~la~~i~~~~~~~--~-~~~~~~ 403 (718)
++....-..+++||+.++..|..++..+... |. ||+||||||||++|+++++.+.-. . ..||..
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~------------ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLG------------HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 3333444458999999999998888876432 55 999999999999999999887310 0 012111
Q ss_pred CCC----CcceeeEee-ccc--cc-----ceeeecc-eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeE
Q 005024 404 SSG----VGLTAAVQR-DNV--TN-----EMVLEGG-ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGIT 470 (718)
Q Consensus 404 ~~~----~~l~~~~~~-~~~--~g-----~~~~~~g-~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~ 470 (718)
.+. .+....+.. +.. .+ +..-... .-..+...+++|||++.|+...++.|+..|++.
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep---------- 143 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP---------- 143 (504)
T ss_pred hhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC----------
Confidence 000 000000000 000 00 0000000 012245679999999999999999999999862
Q ss_pred EEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCC
Q 005024 471 TSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLE 550 (718)
Q Consensus 471 ~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 550 (718)
+..+.+|.++|... .+.+++.+|+..+. +.+++
T Consensus 144 ---~~~t~~Il~t~~~~-------------kl~~~I~SRc~~~~-------------------------------f~~ls 176 (504)
T PRK14963 144 ---PEHVIFILATTEPE-------------KMPPTILSRTQHFR-------------------------------FRRLT 176 (504)
T ss_pred ---CCCEEEEEEcCChh-------------hCChHHhcceEEEE-------------------------------ecCCC
Confidence 23455566666443 68899999995432 46678
Q ss_pred HHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 005024 551 PAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEA 629 (718)
Q Consensus 551 ~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~a 629 (718)
.+.+..++....+ ..-.+++++.+.|.+. ..+++|.+.+++..+.+ ....||.++|..+
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~---------------s~GdlR~aln~Lekl~~-----~~~~It~~~V~~~ 236 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARL---------------ADGAMRDAESLLERLLA-----LGTPVTRKQVEEA 236 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHh-----cCCCCCHHHHHHH
Confidence 8888888877544 3346799999999885 57899999999876532 1357999998887
Q ss_pred HH
Q 005024 630 LR 631 (718)
Q Consensus 630 i~ 631 (718)
+.
T Consensus 237 l~ 238 (504)
T PRK14963 237 LG 238 (504)
T ss_pred HC
Confidence 54
No 110
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3e-12 Score=140.80 Aligned_cols=164 Identities=24% Similarity=0.329 Sum_probs=105.0
Q ss_pred cccccHHHHHHHHHHHhCC--ccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCC----CCcce
Q 005024 337 EIYGHEDIKKALLLLLVGA--PHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSS----GVGLT 410 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~--~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~----~~~l~ 410 (718)
+|-|.+++|..|+-.+--. ++.-...|++.|+ .|||+||||||||.+||++|....-.+... +++. .+|-.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRS--GILLYGPPGTGKTLlAKAVATEcsL~FlSV-KGPELLNMYVGqS 749 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRS--GILLYGPPGTGKTLLAKAVATECSLNFLSV-KGPELLNMYVGQS 749 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccc--eeEEECCCCCchHHHHHHHHhhceeeEEee-cCHHHHHHHhcch
Confidence 7899999999998655332 2222334555555 789999999999999999999876554431 2111 11111
Q ss_pred eeEeecccccceeeecceEeeecCCeeeecccccCChH-------------HHHHHHHhhcccEEEEeeCCeEEEecCce
Q 005024 411 AAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES-------------DRTAIHEVMEQQTVSIAKAGITTSLNART 477 (718)
Q Consensus 411 ~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~-------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~ 477 (718)
...+|+-+.. -..|...|+|+||+|.+-|. ..+.|+.-|+ |....-...+
T Consensus 750 E~NVR~VFer--------AR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD---------gls~~~s~~V 812 (953)
T KOG0736|consen 750 EENVREVFER--------ARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD---------GLSDSSSQDV 812 (953)
T ss_pred HHHHHHHHHH--------hhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh---------cccCCCCCce
Confidence 1112221111 11245679999999998554 2345555554 5555445688
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhh
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
.||+|||++. -|+++||+ |||-.+.+-...+.+...++.+.+.
T Consensus 813 FViGATNRPD-------------LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT 857 (953)
T KOG0736|consen 813 FVIGATNRPD-------------LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT 857 (953)
T ss_pred EEEecCCCcc-------------ccChhhcCCCccceeEEecCCccHHHHHHHHHHHH
Confidence 9999999886 69999998 9998777655555444444544443
No 111
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9.6e-12 Score=136.61 Aligned_cols=207 Identities=17% Similarity=0.190 Sum_probs=140.7
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC----ceeecCCC--------
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR----GVYTTGRG-------- 403 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~----~~~~~~~~-------- 403 (718)
.+++||+.+++.+..++..|... . ++||+||||||||++|+.+|+.+.- ..-.||..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~---h--------a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIP---Q--------SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC---c--------eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 58899999999988888776422 1 6999999999999999999986521 11112211
Q ss_pred ---CCCCcceeeEeecccccceee----ec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEec
Q 005024 404 ---SSGVGLTAAVQRDNVTNEMVL----EG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLN 474 (718)
Q Consensus 404 ---~~~~~l~~~~~~~~~~g~~~~----~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~ 474 (718)
.....+.++. ..|...+ +. -.-..+...+++|||+++|+.+.+++|+..||+- |
T Consensus 82 ~~~~Dv~eidaas----~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-------------p 144 (491)
T PRK14964 82 SNHPDVIEIDAAS----NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-------------A 144 (491)
T ss_pred cCCCCEEEEeccc----CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-------------C
Confidence 1101111110 0110000 00 0012345679999999999999999999999962 3
Q ss_pred CceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHH
Q 005024 475 ARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAIL 554 (718)
Q Consensus 475 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l 554 (718)
..+.+|.+++... .++.++.||+-. + .+.+++.+.+
T Consensus 145 ~~v~fIlatte~~-------------Kl~~tI~SRc~~-~------------------------------~f~~l~~~el 180 (491)
T PRK14964 145 PHVKFILATTEVK-------------KIPVTIISRCQR-F------------------------------DLQKIPTDKL 180 (491)
T ss_pred CCeEEEEEeCChH-------------HHHHHHHHhhee-e------------------------------ecccccHHHH
Confidence 4566666665443 688899999933 3 3566777788
Q ss_pred HHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 555 RAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 555 ~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
.+++..... ....+++++.+.|.+. ..+++|.+.+++..+.+++ .+.||.++|.+.+...
T Consensus 181 ~~~L~~ia~~Egi~i~~eAL~lIa~~---------------s~GslR~alslLdqli~y~----~~~It~e~V~~llg~~ 241 (491)
T PRK14964 181 VEHLVDIAKKENIEHDEESLKLIAEN---------------SSGSMRNALFLLEQAAIYS----NNKISEKSVRDLLGCV 241 (491)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHccC
Confidence 888877544 4457999999999885 4689999999998766654 2579999999876544
No 112
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.38 E-value=2.2e-13 Score=129.82 Aligned_cols=209 Identities=19% Similarity=0.197 Sum_probs=133.7
Q ss_pred HHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCC
Q 005024 328 NKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGV 407 (718)
Q Consensus 328 ~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~ 407 (718)
++...+...+|+|+++....+....-.|+.+ |+++.||||||||+.+..+|+.+--..|..|. .
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~v----L 82 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAV----L 82 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHh----h
Confidence 3344455568999999988888777777655 99999999999999999999876221122111 1
Q ss_pred cceeeEeecccc---cceeeecceEee--ecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEE
Q 005024 408 GLTAAVQRDNVT---NEMVLEGGALVL--ADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSA 482 (718)
Q Consensus 408 ~l~~~~~~~~~~---g~~~~~~g~l~~--a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa 482 (718)
+|.++..|.-.. ....+....+.+ ....|++|||.|.|....|.+|.+.||-- ...+++..|
T Consensus 83 ELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy-------------S~ttRFala 149 (333)
T KOG0991|consen 83 ELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY-------------SNTTRFALA 149 (333)
T ss_pred hccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH-------------cccchhhhh
Confidence 334433222110 000111111112 23469999999999999999999999832 224566777
Q ss_pred eCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH-H
Q 005024 483 ANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA-A 561 (718)
Q Consensus 483 ~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~-~ 561 (718)
||... ++-+|+.|||.+.. +..++...+-+.+.. +
T Consensus 150 CN~s~-------------KIiEPIQSRCAiLR-------------------------------ysklsd~qiL~Rl~~v~ 185 (333)
T KOG0991|consen 150 CNQSE-------------KIIEPIQSRCAILR-------------------------------YSKLSDQQILKRLLEVA 185 (333)
T ss_pred hcchh-------------hhhhhHHhhhHhhh-------------------------------hcccCHHHHHHHHHHHH
Confidence 88776 78899999995542 333444444444443 4
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 005024 562 RRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEA 629 (718)
Q Consensus 562 ~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~a 629 (718)
+.-...++++..+.++.. ..|+.||..+.+.-. ..+-..|+.+.|-.+
T Consensus 186 k~Ekv~yt~dgLeaiift---------------a~GDMRQalNnLQst-----~~g~g~Vn~enVfKv 233 (333)
T KOG0991|consen 186 KAEKVNYTDDGLEAIIFT---------------AQGDMRQALNNLQST-----VNGFGLVNQENVFKV 233 (333)
T ss_pred HHhCCCCCcchHHHhhhh---------------ccchHHHHHHHHHHH-----hccccccchhhhhhc
Confidence 444556888888888763 578888887776532 224555666655443
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=4.3e-11 Score=134.06 Aligned_cols=210 Identities=20% Similarity=0.177 Sum_probs=137.0
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCcee----ecCCCCCC----C
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVY----TTGRGSSG----V 407 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~----~~~~~~~~----~ 407 (718)
.+|+|++.++..|..++..+... . ++||+||||||||++|+.+++.+..... .|+...+. .
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~---h--------a~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVA---P--------AYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQ 84 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCC---c--------eEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhc
Confidence 47889999999988888776421 1 7889999999999999999998742100 11110000 0
Q ss_pred ccee-eEeeccc--ccce---eee--cc-eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 408 GLTA-AVQRDNV--TNEM---VLE--GG-ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 408 ~l~~-~~~~~~~--~g~~---~~~--~g-~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
|... ....+.. .+.- .+. .. .-..+...|++|||+++|+.+.+++|+..||+. +.++.
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-------------~~~~i 151 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP-------------PARVT 151 (624)
T ss_pred CCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc-------------CCCEE
Confidence 0000 0000100 0000 000 00 011234579999999999999999999999862 23455
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYI 558 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i 558 (718)
+|.++|... .+...++||+-.+ .+.+++.+.+..++
T Consensus 152 fILaTt~~~-------------kll~TI~SRcq~i-------------------------------~F~pLs~~eL~~~L 187 (624)
T PRK14959 152 FVLATTEPH-------------KFPVTIVSRCQHF-------------------------------TFTRLSEAGLEAHL 187 (624)
T ss_pred EEEecCChh-------------hhhHHHHhhhhcc-------------------------------ccCCCCHHHHHHHH
Confidence 666666433 5777899998432 35678888888888
Q ss_pred HHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 559 SAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 559 ~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
..... ....+++++.+.|..+ ..+++|.+.+++..+. + .+.+.|+.++|..++..
T Consensus 188 ~~il~~egi~id~eal~lIA~~---------------s~GdlR~Al~lLeqll--~--~g~~~It~d~V~~~lg~ 243 (624)
T PRK14959 188 TKVLGREGVDYDPAAVRLIARR---------------AAGSVRDSMSLLGQVL--A--LGESRLTIDGARGVLGL 243 (624)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHH--H--hcCCCcCHHHHHHHhCC
Confidence 76544 3345999999999885 4689999999987442 2 25568999999887744
No 114
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.37 E-value=1.1e-11 Score=147.46 Aligned_cols=242 Identities=14% Similarity=0.141 Sum_probs=144.2
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHhCC----ccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---eee
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLVGA----PHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---VYT 399 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~~~----~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~~~ 399 (718)
+..+...+...++|++.+..++..++... ..+..+ ...+||+||||||||.+|+++|+.+... +..
T Consensus 556 l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p-------~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~ 628 (852)
T TIGR03346 556 LLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRP-------IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVR 628 (852)
T ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCC-------CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEE
Confidence 34456678889999999988887666432 211112 2269999999999999999999987321 211
Q ss_pred cCCCCCCCcceeeEeecccccce-eeecceEe----eecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEec
Q 005024 400 TGRGSSGVGLTAAVQRDNVTNEM-VLEGGALV----LADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLN 474 (718)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~g~~-~~~~g~l~----~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~ 474 (718)
............+.......|-. .-+.|.+. .....|++||||++++++.++.|+++|++|.++.. .|....+
T Consensus 629 ~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~-~g~~vd~- 706 (852)
T TIGR03346 629 IDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG-QGRTVDF- 706 (852)
T ss_pred EechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecC-CCeEEec-
Confidence 11100000000000000000000 00112221 12346999999999999999999999999998854 3444444
Q ss_pred CceEEEEEeCCCCCCCCC------CCCcc------hhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCC
Q 005024 475 ARTAVLSAANPAWGRYDL------RRTPA------ENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESP 542 (718)
Q Consensus 475 ~~~~viaa~Np~~g~~~~------~~~~~------~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~ 542 (718)
.++.||+|+|-....+.. ...+. ..-.+.+.|+.|+|-++++ .+++.+.-..|+...+.
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF-~PL~~e~l~~I~~l~L~-------- 777 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVF-HPLGREQIARIVEIQLG-------- 777 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEec-CCcCHHHHHHHHHHHHH--------
Confidence 368899999975321110 01111 1225889999999988776 44555555555443322
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHH
Q 005024 543 ALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRIS 609 (718)
Q Consensus 543 ~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla 609 (718)
.+.+.+. .+.+...+++++.++|.++. ...++++|.|.++++..
T Consensus 778 ----------~l~~~l~-~~~~~l~i~~~a~~~L~~~~------------~~~~~gaR~L~~~i~~~ 821 (852)
T TIGR03346 778 ----------RLRKRLA-ERKITLELSDAALDFLAEAG------------YDPVYGARPLKRAIQRE 821 (852)
T ss_pred ----------HHHHHHH-HCCCeecCCHHHHHHHHHhC------------CCCCCCchhHHHHHHHH
Confidence 2232221 11234679999999998851 02278999999998743
No 115
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=5.8e-11 Score=135.03 Aligned_cols=208 Identities=17% Similarity=0.205 Sum_probs=138.2
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCce----eecCCCCCCCcc
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGV----YTTGRGSSGVGL 409 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~~~~~~~~l 409 (718)
+.+|+|++.+++.|..++..|... | +||+||+|+|||++|+.+++.+.... ..||...+...+
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~------------hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVA------------HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 348999999999999998877432 4 58999999999999999999874210 011111000000
Q ss_pred -----eeeEeecccc--c--ce-ee-ec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCc
Q 005024 410 -----TAAVQRDNVT--N--EM-VL-EG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNAR 476 (718)
Q Consensus 410 -----~~~~~~~~~~--g--~~-~~-~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~ 476 (718)
......+..+ | .. .+ +. -.-..++..|++|||+++|+...+++|+..||+- +..
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-------------p~~ 149 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-------------PPH 149 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-------------CCC
Confidence 0000011000 0 00 00 00 0012345679999999999999999999999962 445
Q ss_pred eEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 005024 477 TAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRA 556 (718)
Q Consensus 477 ~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~ 556 (718)
+.+|.++|... .|+.+++||+-.+ .+.+++.+.+..
T Consensus 150 ~~fIl~t~~~~-------------kl~~tI~SRc~~~-------------------------------~f~~l~~~~i~~ 185 (576)
T PRK14965 150 VKFIFATTEPH-------------KVPITILSRCQRF-------------------------------DFRRIPLQKIVD 185 (576)
T ss_pred eEEEEEeCChh-------------hhhHHHHHhhhhh-------------------------------hcCCCCHHHHHH
Confidence 66666666443 7899999999322 356678888888
Q ss_pred HHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 557 YISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 557 ~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
++...-+ ..-.+++++...|... ..++.|.+.+++.-+.+.+ .+.|+.+||...+
T Consensus 186 ~L~~i~~~egi~i~~~al~~la~~---------------a~G~lr~al~~Ldqliay~----g~~It~edV~~ll 241 (576)
T PRK14965 186 RLRYIADQEGISISDAALALVARK---------------GDGSMRDSLSTLDQVLAFC----GDAVGDDDVAELL 241 (576)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 8876443 3446899999998885 5789999999987555443 2469999998764
No 116
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.36 E-value=7.5e-12 Score=146.95 Aligned_cols=236 Identities=14% Similarity=0.210 Sum_probs=141.8
Q ss_pred HHHHHHhhcCCcccccHHHHHHHHHHHhCCc----cccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 326 IYNKLARSLAPEIYGHEDIKKALLLLLVGAP----HRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 326 ~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~----~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
-+..+...+...|+||+.++..+..++.... .+..+.| ++||+||||||||.+|+++++.+...+....
T Consensus 444 ~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~-------~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d 516 (731)
T TIGR02639 444 KLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVG-------SFLFTGPTGVGKTELAKQLAEALGVHLERFD 516 (731)
T ss_pred HHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCce-------eEEEECCCCccHHHHHHHHHHHhcCCeEEEe
Confidence 4456778888999999999998887765321 1111111 6899999999999999999999865443321
Q ss_pred CCC--C---CCcceeeEeecccccceeeecc----eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEE
Q 005024 402 RGS--S---GVGLTAAVQRDNVTNEMVLEGG----ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTS 472 (718)
Q Consensus 402 ~~~--~---~~~l~~~~~~~~~~g~~~~~~g----~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~ 472 (718)
... . ...+.++... +-| .-+.| ++.....+|++||||+++.++.++.|+++|++|.++.. .|....
T Consensus 517 ~se~~~~~~~~~lig~~~g--yvg--~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~-~g~~vd 591 (731)
T TIGR02639 517 MSEYMEKHTVSRLIGAPPG--YVG--FEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN-NGRKAD 591 (731)
T ss_pred CchhhhcccHHHHhcCCCC--Ccc--cchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecC-CCcccC
Confidence 110 0 0011111000 000 00111 11223568999999999999999999999999998753 343333
Q ss_pred ecCceEEEEEeCCCCCC-------CCCCCCcc----h--hcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCC
Q 005024 473 LNARTAVLSAANPAWGR-------YDLRRTPA----E--NINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNK 539 (718)
Q Consensus 473 l~~~~~viaa~Np~~g~-------~~~~~~~~----~--~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~ 539 (718)
+ .++.+|+|+|..... |.. .... . .-.++++|++|+|-++.+ .+.+.+.-.+|++..+.
T Consensus 592 ~-~~~iii~Tsn~g~~~~~~~~~~f~~-~~~~~~~~~~~~~~f~pef~~Rid~Vi~F-~pLs~e~l~~Iv~~~L~----- 663 (731)
T TIGR02639 592 F-RNVILIMTSNAGASEMSKPPIGFGS-ENVESKSDKAIKKLFSPEFRNRLDAIIHF-NPLSEEVLEKIVQKFVD----- 663 (731)
T ss_pred C-CCCEEEECCCcchhhhhhccCCcch-hhhHHHHHHHHHhhcChHHHhcCCeEEEc-CCCCHHHHHHHHHHHHH-----
Confidence 3 378899999975211 111 0100 1 124889999999987765 34444444444443221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHH
Q 005024 540 ESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILR 607 (718)
Q Consensus 540 ~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lir 607 (718)
.+.+.+. .+.+.-.+++++.++|.... ......+|.|..+++
T Consensus 664 -------------~l~~~l~-~~~~~l~i~~~a~~~La~~~------------~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 664 -------------ELSKQLN-EKNIKLELTDDAKKYLAEKG------------YDEEFGARPLARVIQ 705 (731)
T ss_pred -------------HHHHHHH-hCCCeEEeCHHHHHHHHHhC------------CCcccCchHHHHHHH
Confidence 1111111 01123368999999988741 123456898888886
No 117
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.36 E-value=4.4e-12 Score=137.15 Aligned_cols=191 Identities=17% Similarity=0.182 Sum_probs=116.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEe---eecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALV---LADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~---~a~~gil~iDEi~~~~~ 447 (718)
++||+||||||||++|++++..+...++..... .+...... .+...+. -.+. .....|+||||+|.+..
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s----~l~~k~~g---e~~~~lr-~lf~~A~~~~P~ILfIDEID~i~~ 252 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGS----EFVQKYLG---EGPRMVR-DVFRLARENAPSIIFIDEVDSIAT 252 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH----HHHHHhcc---hhHHHHH-HHHHHHHhcCCeEEEEECHhhhcc
Confidence 799999999999999999999876554432110 00000000 0000000 0000 11357999999997631
Q ss_pred -----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEE
Q 005024 448 -----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLW 514 (718)
Q Consensus 448 -----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~ 514 (718)
..+..+.+.+.+-. |. .-..++.||+|||... .+++++++ |||..+
T Consensus 253 ~r~~~~~~~d~~~~r~l~~LL~~ld------~~--~~~~~v~VI~aTN~~d-------------~LDpAllR~GRfd~~I 311 (398)
T PTZ00454 253 KRFDAQTGADREVQRILLELLNQMD------GF--DQTTNVKVIMATNRAD-------------TLDPALLRPGRLDRKI 311 (398)
T ss_pred ccccccCCccHHHHHHHHHHHHHhh------cc--CCCCCEEEEEecCCch-------------hCCHHHcCCCcccEEE
Confidence 23334444443210 11 1123678999999876 79999997 999886
Q ss_pred EeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHhhHhhhhcCCC
Q 005024 515 LILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRE-LEEYIAAAYSNIRQEEAKSNTP 593 (718)
Q Consensus 515 ~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~-~~~~l~~~y~~lr~~~~~~~~~ 593 (718)
.+ +.|+......|.+..+. .. .++++ -.+.+...
T Consensus 312 ~~-~~P~~~~R~~Il~~~~~----------------------------~~--~l~~dvd~~~la~~-------------- 346 (398)
T PTZ00454 312 EF-PLPDRRQKRLIFQTITS----------------------------KM--NLSEEVDLEDFVSR-------------- 346 (398)
T ss_pred Ee-CCcCHHHHHHHHHHHHh----------------------------cC--CCCcccCHHHHHHH--------------
Confidence 54 77777666555433221 11 11111 11122221
Q ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 594 HSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 594 ~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
....|.+.+.++++.|...|-.+.+..|+.+|+.+|+..+..
T Consensus 347 t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 347 PEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 346788999999999999998888889999999999987643
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=7.1e-11 Score=134.22 Aligned_cols=208 Identities=17% Similarity=0.199 Sum_probs=136.0
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCcee-----ecCCCCCCCcc
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGVY-----TTGRGSSGVGL 409 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~~-----~~~~~~~~~~l 409 (718)
.+|+||+.+++.+.-++..|... | +||+||+|+|||++|+.+|+.+.-... .|+......+.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~------------HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKIS------------HAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 37999999999999999877422 4 589999999999999999988732110 11111000000
Q ss_pred eeeEe-eccc--ccce---ee-e-cc-eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEE
Q 005024 410 TAAVQ-RDNV--TNEM---VL-E-GG-ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVL 480 (718)
Q Consensus 410 ~~~~~-~~~~--~g~~---~~-~-~g-~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~vi 480 (718)
...+. .+.. .|.- .+ + .. .-..++..|++|||++.|....+++|+..||+. |..+.+|
T Consensus 86 ~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifI 152 (725)
T PRK07133 86 SLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFI 152 (725)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-------------CCceEEE
Confidence 00000 0110 0000 00 0 00 001245679999999999999999999999963 3455556
Q ss_pred EEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH
Q 005024 481 SAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA 560 (718)
Q Consensus 481 aa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~ 560 (718)
.+++... .++++++|||..+ .+.+++.+.+.+++..
T Consensus 153 LaTte~~-------------KLl~TI~SRcq~i-------------------------------eF~~L~~eeI~~~L~~ 188 (725)
T PRK07133 153 LATTEVH-------------KIPLTILSRVQRF-------------------------------NFRRISEDEIVSRLEF 188 (725)
T ss_pred EEcCChh-------------hhhHHHHhhceeE-------------------------------EccCCCHHHHHHHHHH
Confidence 5555333 6889999999433 2566778888888876
Q ss_pred HHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 561 ARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 561 ~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
... ..-.+++++.+.++.. ..|++|.+.+++..+.+.+ ...|+.++|.+++.
T Consensus 189 il~kegI~id~eAl~~LA~l---------------S~GslR~AlslLekl~~y~----~~~It~e~V~ellg 241 (725)
T PRK07133 189 ILEKENISYEKNALKLIAKL---------------SSGSLRDALSIAEQVSIFG----NNKITLKNVEELFG 241 (725)
T ss_pred HHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhc----cCCCCHHHHHHHHc
Confidence 433 3346888888888875 4689999999988655443 34599999987654
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=5.1e-11 Score=139.08 Aligned_cols=207 Identities=19% Similarity=0.148 Sum_probs=136.7
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCc----eeecCCCCC----
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRG----VYTTGRGSS---- 405 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~----~~~~~~~~~---- 405 (718)
+.+|+||+.+++.|..++..+... | +||+|++|||||++|+.+++.+.-. ...||...+
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~------------Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~ 81 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRIN------------HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVAL 81 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCC------------ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHH
Confidence 347899999999999888877533 6 7899999999999999999987411 011222110
Q ss_pred ------CCcceeeEeecccc--cce---eeec---ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEE
Q 005024 406 ------GVGLTAAVQRDNVT--NEM---VLEG---GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITT 471 (718)
Q Consensus 406 ------~~~l~~~~~~~~~~--g~~---~~~~---g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~ 471 (718)
...+. ..+..+ +.- .+.. ..-......|++|||+++|+...+++|+..||+
T Consensus 82 ~~g~~~~~dv~---eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE------------ 146 (824)
T PRK07764 82 APGGPGSLDVT---EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE------------ 146 (824)
T ss_pred HcCCCCCCcEE---EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC------------
Confidence 00110 001100 000 0000 001224567999999999999999999999996
Q ss_pred EecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCH
Q 005024 472 SLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEP 551 (718)
Q Consensus 472 ~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 551 (718)
.+..+.||.++|... .|..+|.||+-.+. |.+++.
T Consensus 147 -pP~~~~fIl~tt~~~-------------kLl~TIrSRc~~v~-------------------------------F~~l~~ 181 (824)
T PRK07764 147 -PPEHLKFIFATTEPD-------------KVIGTIRSRTHHYP-------------------------------FRLVPP 181 (824)
T ss_pred -CCCCeEEEEEeCChh-------------hhhHHHHhheeEEE-------------------------------eeCCCH
Confidence 234566666665443 58889999994332 455677
Q ss_pred HHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 552 AILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 552 ~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
+.|.+++..... ....+++++..+|... ..+++|.+.+++....+.+ +.+.||.++|...+
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~---------------sgGdlR~Al~eLEKLia~~---~~~~IT~e~V~all 243 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRA---------------GGGSVRDSLSVLDQLLAGA---GPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHhhc---CCCCCCHHHHHHHh
Confidence 788888876533 3345789988888875 4688999998887544433 45679998888654
Q ss_pred H
Q 005024 631 R 631 (718)
Q Consensus 631 ~ 631 (718)
.
T Consensus 244 g 244 (824)
T PRK07764 244 G 244 (824)
T ss_pred c
Confidence 3
No 120
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.1e-10 Score=131.28 Aligned_cols=208 Identities=21% Similarity=0.254 Sum_probs=135.9
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCc--e--eecCCCCCC----
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRG--V--YTTGRGSSG---- 406 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~--~--~~~~~~~~~---- 406 (718)
.+|+|++.+++.+..++..+... | +||+||||+|||++|+.+++.+.-. . ..||...+.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~------------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~ 83 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLH------------HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEID 83 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 37899999999999888876432 5 5899999999999999999887321 0 012211000
Q ss_pred Cc-ceeeEeeccc--ccce----eeec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCce
Q 005024 407 VG-LTAAVQRDNV--TNEM----VLEG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNART 477 (718)
Q Consensus 407 ~~-l~~~~~~~~~--~g~~----~~~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~ 477 (718)
.| ......-+.. .+.- .+.. ..-..+...|++|||+++|+...+++|+..||+. |..+
T Consensus 84 ~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p~~~ 150 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHV 150 (527)
T ss_pred cCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-------------CCCE
Confidence 00 0000000100 0000 0000 0011234579999999999999999999999862 3345
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAY 557 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 557 (718)
.+|.+||... .++..++||+- .+ .+.+++.+.+.++
T Consensus 151 ~fIL~t~d~~-------------kil~tI~SRc~-~~------------------------------~f~~l~~~~i~~~ 186 (527)
T PRK14969 151 KFILATTDPQ-------------KIPVTVLSRCL-QF------------------------------NLKQMPPPLIVSH 186 (527)
T ss_pred EEEEEeCChh-------------hCchhHHHHHH-HH------------------------------hcCCCCHHHHHHH
Confidence 5555555333 57778999993 22 3567888888888
Q ss_pred HHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 558 ISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 558 i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+...-. ..-.+++++.+.|... ..+++|.+.+++..+.+. +...|+.++|...+.
T Consensus 187 L~~il~~egi~~~~~al~~la~~---------------s~Gslr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 187 LQHILEQENIPFDATALQLLARA---------------AAGSMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 876543 2335788988888875 468999999999766544 467899999988765
No 121
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.35 E-value=4.2e-12 Score=137.47 Aligned_cols=223 Identities=20% Similarity=0.214 Sum_probs=127.2
Q ss_pred cccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
+|.|.+..++.|...+...-. +.......+...-++||+||||||||++|+++++.+...++.... .++......
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~----~~l~~~~~g 198 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG----SELVRKYIG 198 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch----HHHHHHhhh
Confidence 556777766666544432100 000000001122269999999999999999999988765443211 011100000
Q ss_pred cccccceeeecceEeee---cCCeeeecccccCC-----------hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEE
Q 005024 416 DNVTNEMVLEGGALVLA---DMGICAIDEFDKMD-----------ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLS 481 (718)
Q Consensus 416 ~~~~g~~~~~~g~l~~a---~~gil~iDEi~~~~-----------~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~via 481 (718)
.+...+ ...+..+ ..+++||||+|.+. ...+..+.+.+.+-. |. .-..++.||+
T Consensus 199 ---~~~~~i-~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~ 266 (364)
T TIGR01242 199 ---EGARLV-REIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIA 266 (364)
T ss_pred ---HHHHHH-HHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEE
Confidence 000000 0011111 34699999999873 233455555553210 11 1123688999
Q ss_pred EeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 005024 482 AANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYIS 559 (718)
Q Consensus 482 a~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~ 559 (718)
|+|... .+++++++ |||-.+.+ +.|+.....+|.+..+
T Consensus 267 ttn~~~-------------~ld~al~r~grfd~~i~v-~~P~~~~r~~Il~~~~-------------------------- 306 (364)
T TIGR01242 267 ATNRPD-------------ILDPALLRPGRFDRIIEV-PLPDFEGRLEILKIHT-------------------------- 306 (364)
T ss_pred ecCChh-------------hCChhhcCcccCceEEEe-CCcCHHHHHHHHHHHH--------------------------
Confidence 999875 68999986 99986543 6777666555533211
Q ss_pred HHHhcCCCCCHH-HHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 560 AARRLSPCVPRE-LEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 560 ~~~~~~p~ls~~-~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
+.. .++++ ..+.+... ....+.+.+.++++.|...|-.+.+..|+.+|+.+|+..+
T Consensus 307 --~~~--~l~~~~~~~~la~~--------------t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 307 --RKM--KLAEDVDLEAIAKM--------------TEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred --hcC--CCCccCCHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 111 11111 12222222 2356789999999999999988889999999999998753
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.1e-10 Score=131.63 Aligned_cols=207 Identities=14% Similarity=0.162 Sum_probs=137.5
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc----eeecCCCC------C
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG----VYTTGRGS------S 405 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~----~~~~~~~~------~ 405 (718)
.+|+||+.++..+..++..|... . .+||+||||+|||++|+.+++.+... ...||... .
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~---h--------ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIA---N--------AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCC---e--------EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 38999999999999988877432 1 48999999999999999999987421 11122110 0
Q ss_pred CCcceeeEeeccc--cc--ce-ee----ecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCc
Q 005024 406 GVGLTAAVQRDNV--TN--EM-VL----EGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNAR 476 (718)
Q Consensus 406 ~~~l~~~~~~~~~--~g--~~-~~----~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~ 476 (718)
...+.. ...+.. .+ .. .+ ...+ ..++..+++|||+++|+...+++|+..||+. |..
T Consensus 85 ~~~~dv-~~idgas~~~vddIr~l~e~~~~~p-~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~ 149 (563)
T PRK06647 85 DNSLDV-IEIDGASNTSVQDVRQIKEEIMFPP-ASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPY 149 (563)
T ss_pred CCCCCe-EEecCcccCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCC
Confidence 000000 000100 00 00 00 0001 1345679999999999999999999999852 345
Q ss_pred eEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 005024 477 TAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRA 556 (718)
Q Consensus 477 ~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~ 556 (718)
+.+|.+++... .+++++.+|+..+. +.+++.+.+.+
T Consensus 150 ~vfI~~tte~~-------------kL~~tI~SRc~~~~-------------------------------f~~l~~~el~~ 185 (563)
T PRK06647 150 IVFIFATTEVH-------------KLPATIKSRCQHFN-------------------------------FRLLSLEKIYN 185 (563)
T ss_pred EEEEEecCChH-------------HhHHHHHHhceEEE-------------------------------ecCCCHHHHHH
Confidence 66666665333 68899999995432 45567777887
Q ss_pred HHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 557 YISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 557 ~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
++....+ ..-.+++++.++|+.. ..+++|.+.+++..+.+.+ ...|+.++|..++.
T Consensus 186 ~L~~i~~~egi~id~eAl~lLa~~---------------s~GdlR~alslLdklis~~----~~~It~e~V~~llg 242 (563)
T PRK06647 186 MLKKVCLEDQIKYEDEALKWIAYK---------------STGSVRDAYTLFDQVVSFS----DSDITLEQIRSKMG 242 (563)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 7776543 3346899999999885 5689999999997655543 35699999988764
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=9.5e-11 Score=130.12 Aligned_cols=205 Identities=19% Similarity=0.196 Sum_probs=136.2
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCc--e--eecCCCC------
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRG--V--YTTGRGS------ 404 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~--~--~~~~~~~------ 404 (718)
-+++||+.++..+..++..+... | +||+||||+|||++|+.+++.+.-. . ..||...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~------------hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVS------------HAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 37889999999999999877532 5 5789999999999999999987421 0 0111110
Q ss_pred --CCCcceeeEeeccc--ccce---eeec--c-eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEec
Q 005024 405 --SGVGLTAAVQRDNV--TNEM---VLEG--G-ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLN 474 (718)
Q Consensus 405 --~~~~l~~~~~~~~~--~g~~---~~~~--g-~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~ 474 (718)
+..++. .-+.. .|.- .+.. . .-..++..|++|||+++|+...+++|+..||+. |
T Consensus 84 ~g~~~d~~---eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-------------p 147 (486)
T PRK14953 84 KGSFPDLI---EIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-------------P 147 (486)
T ss_pred cCCCCcEE---EEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-------------C
Confidence 000110 00110 0100 0000 0 011245679999999999999999999999853 3
Q ss_pred CceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHH
Q 005024 475 ARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAIL 554 (718)
Q Consensus 475 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l 554 (718)
..+.+|.++|... .+++++.+|+..+ .+.+++.+.+
T Consensus 148 ~~~v~Il~tt~~~-------------kl~~tI~SRc~~i-------------------------------~f~~ls~~el 183 (486)
T PRK14953 148 PRTIFILCTTEYD-------------KIPPTILSRCQRF-------------------------------IFSKPTKEQI 183 (486)
T ss_pred CCeEEEEEECCHH-------------HHHHHHHHhceEE-------------------------------EcCCCCHHHH
Confidence 3445555554332 5788999999432 2456778888
Q ss_pred HHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 555 RAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 555 ~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
..++....+ ..-.+++++.+.|.++ ..+++|.+.++++.+.+.+ ...||.++|..++.
T Consensus 184 ~~~L~~i~k~egi~id~~al~~La~~---------------s~G~lr~al~~Ldkl~~~~----~~~It~~~V~~~lg 242 (486)
T PRK14953 184 KEYLKRICNEEKIEYEEKALDLLAQA---------------SEGGMRDAASLLDQASTYG----EGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhc----CCCcCHHHHHHHhC
Confidence 888876543 3446889999998875 4689999999998765543 45799999998764
No 124
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.3e-11 Score=139.81 Aligned_cols=237 Identities=17% Similarity=0.216 Sum_probs=146.5
Q ss_pred HHHHHHhhcCCcccccHHHHHHHHHHH----hCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC---Ccee
Q 005024 326 IYNKLARSLAPEIYGHEDIKKALLLLL----VGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP---RGVY 398 (718)
Q Consensus 326 ~~~~l~~si~p~i~g~~~~k~~i~~~l----~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~---~~~~ 398 (718)
..-.+.+.+...++||+.+..++.-++ +|=..++.|-| ..||.||+|+|||.||+++|..+- ....
T Consensus 481 kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPig-------sFlF~GPTGVGKTELAkaLA~~Lfg~e~ali 553 (786)
T COG0542 481 KLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIG-------SFLFLGPTGVGKTELAKALAEALFGDEQALI 553 (786)
T ss_pred HHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCce-------EEEeeCCCcccHHHHHHHHHHHhcCCCccce
Confidence 445677888999999999888777555 34333334444 799999999999999999999983 2211
Q ss_pred ecCCCC-----CCCcceeeEeecccccceeeecceEeee----cCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCe
Q 005024 399 TTGRGS-----SGVGLTAAVQRDNVTNEMVLEGGALVLA----DMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGI 469 (718)
Q Consensus 399 ~~~~~~-----~~~~l~~~~~~~~~~g~~~~~~g~l~~a----~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~ 469 (718)
....+- +...|.++.-. +-| .-+.|.+.-| ...|+++|||+|+.|+..+.|+++|++|+++-.+ |.
T Consensus 554 R~DMSEy~EkHsVSrLIGaPPG--YVG--yeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~-Gr 628 (786)
T COG0542 554 RIDMSEYMEKHSVSRLIGAPPG--YVG--YEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ-GR 628 (786)
T ss_pred eechHHHHHHHHHHHHhCCCCC--Cce--eccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC-CC
Confidence 111100 00011111000 000 1223433333 2469999999999999999999999999999863 34
Q ss_pred EEEecCceEEEEEeCCCCCCC---------CCCCCcchh------cCCChhhhcccceEEEeccCCChhHHHHHHhhhhh
Q 005024 470 TTSLNARTAVLSAANPAWGRY---------DLRRTPAEN------INLPPALLSRFDLLWLILDRADMDSDLEMARHVVY 534 (718)
Q Consensus 470 ~~~l~~~~~viaa~Np~~g~~---------~~~~~~~~~------~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~ 534 (718)
.+.+ .++.||+|+|--.... .......+. -.++|.+++|+|-++++ .+.+.+.-.+|+...+.
T Consensus 629 ~VdF-rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F-~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 629 TVDF-RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPF-NPLSKEVLERIVDLQLN 706 (786)
T ss_pred EEec-ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEec-cCCCHHHHHHHHHHHHH
Confidence 4443 3789999999762111 111112222 25899999999976654 44554555555444332
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHH
Q 005024 535 VHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILR 607 (718)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lir 607 (718)
.+.+.+. -+.+.-.+++++.++|.+.+. .....+|.|..+|.
T Consensus 707 ------------------~l~~~L~-~~~i~l~~s~~a~~~l~~~gy------------d~~~GARpL~R~Iq 748 (786)
T COG0542 707 ------------------RLAKRLA-ERGITLELSDEAKDFLAEKGY------------DPEYGARPLRRAIQ 748 (786)
T ss_pred ------------------HHHHHHH-hCCceEEECHHHHHHHHHhcc------------CCCcCchHHHHHHH
Confidence 2333333 122444699999999988642 23455788888775
No 125
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.33 E-value=8e-12 Score=140.66 Aligned_cols=187 Identities=25% Similarity=0.279 Sum_probs=105.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCC---CCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSS---GVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
++||+||||||||+++++++..+...++....... ..|......+.. +.. + .....+|+||||+|.+..
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~------f~~-a-~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL------FEQ-A-KKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHH------HHH-H-HhcCCCEEEEechhhhhh
Confidence 79999999999999999999988655443211000 001000000000 000 0 011357999999998743
Q ss_pred HH--------------HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccc
Q 005024 448 SD--------------RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFD 511 (718)
Q Consensus 448 ~~--------------~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfd 511 (718)
.. .+.|+..|+ |. .-...+.||||||+.. .+++++++ |||
T Consensus 162 ~r~~~~~~~~~~~~~~~~~lL~~~d---------~~--~~~~~v~vI~aTn~~~-------------~ld~al~r~gRfd 217 (495)
T TIGR01241 162 QRGAGLGGGNDEREQTLNQLLVEMD---------GF--GTNTGVIVIAATNRPD-------------VLDPALLRPGRFD 217 (495)
T ss_pred ccccCcCCccHHHHHHHHHHHhhhc---------cc--cCCCCeEEEEecCChh-------------hcCHHHhcCCcce
Confidence 21 122333332 11 1123578999999886 79999997 999
Q ss_pred eEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcC
Q 005024 512 LLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSN 591 (718)
Q Consensus 512 li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~ 591 (718)
..+.+ +.|+.+...+|.+..+... . .-++...+.+...
T Consensus 218 ~~i~i-~~Pd~~~R~~il~~~l~~~----------------------------~-~~~~~~l~~la~~------------ 255 (495)
T TIGR01241 218 RQVVV-DLPDIKGREEILKVHAKNK----------------------------K-LAPDVDLKAVARR------------ 255 (495)
T ss_pred EEEEc-CCCCHHHHHHHHHHHHhcC----------------------------C-CCcchhHHHHHHh------------
Confidence 87554 7788777766654433210 0 0011111122221
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 592 TPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 592 ~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
....+.+.+.++++.|...|..+.+..|+.+|+..|+...
T Consensus 256 --t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 256 --TPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 2345666777777766555555556667777777777654
No 126
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.33 E-value=6.5e-12 Score=136.62 Aligned_cols=191 Identities=20% Similarity=0.202 Sum_probs=115.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccce-eeecceEeee---cCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEM-VLEGGALVLA---DMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~g~l~~a---~~gil~iDEi~~~~ 446 (718)
++||+||||||||++|++++..+...++..... .+.. .+.|+. ......+..| ...|+||||+|.+.
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s----eL~~-----k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 289 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATFLRVVGS----ELIQ-----KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIG 289 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc----hhhh-----hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHh
Confidence 799999999999999999999876554332110 1111 111110 0000111111 34699999998763
Q ss_pred h-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceE
Q 005024 447 E-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLL 513 (718)
Q Consensus 447 ~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli 513 (718)
. ..+..+++.+.+-. |.. -..++.||+|+|... .+++++++ |||..
T Consensus 290 ~kR~~~~sgg~~e~qr~ll~LL~~Ld------g~~--~~~~V~VI~ATNr~d-------------~LDpaLlRpGRfd~~ 348 (438)
T PTZ00361 290 TKRYDATSGGEKEIQRTMLELLNQLD------GFD--SRGDVKVIMATNRIE-------------SLDPALIRPGRIDRK 348 (438)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHh------hhc--ccCCeEEEEecCChH-------------HhhHHhccCCeeEEE
Confidence 1 22344455443210 111 123678999999775 78999986 99987
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHhhHhhhhcCC
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPREL-EEYIAAAYSNIRQEEAKSNT 592 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~-~~~l~~~y~~lr~~~~~~~~ 592 (718)
+.+ +.|+......|.+..+ ... .+++++ .+.+...
T Consensus 349 I~~-~~Pd~~~R~~Il~~~~----------------------------~k~--~l~~dvdl~~la~~------------- 384 (438)
T PTZ00361 349 IEF-PNPDEKTKRRIFEIHT----------------------------SKM--TLAEDVDLEEFIMA------------- 384 (438)
T ss_pred EEe-CCCCHHHHHHHHHHHH----------------------------hcC--CCCcCcCHHHHHHh-------------
Confidence 654 6777666555533211 111 122211 1122221
Q ss_pred CCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 593 PHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 593 ~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
....+...+.++++.|...|.-+.+..|+.+|+..|+.-+...
T Consensus 385 -t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 385 -KDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 3467788899999999999988888999999999999877543
No 127
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=2.5e-10 Score=126.03 Aligned_cols=217 Identities=17% Similarity=0.141 Sum_probs=138.8
Q ss_pred HHHHhhcCC----cccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCcee-----
Q 005024 328 NKLARSLAP----EIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVY----- 398 (718)
Q Consensus 328 ~~l~~si~p----~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~----- 398 (718)
..+++...| +|+|++.++..+..++..|... . .+||+||||+|||++|+.+++.+.-...
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~---h--------a~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~ 73 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAA---H--------AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQE 73 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCc---e--------EEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCC
Confidence 334444444 8999999999888888776432 1 4889999999999999999988632100
Q ss_pred ecCCCC------CCCcceeeEeec-ccccceee----e--cceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEe
Q 005024 399 TTGRGS------SGVGLTAAVQRD-NVTNEMVL----E--GGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIA 465 (718)
Q Consensus 399 ~~~~~~------~~~~l~~~~~~~-~~~g~~~~----~--~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~ 465 (718)
.||... ............ ...|.-.+ + +-.-..++..+++|||++.|+.+.+++|+..||+.
T Consensus 74 ~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep----- 148 (451)
T PRK06305 74 PCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP----- 148 (451)
T ss_pred CCcccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-----
Confidence 011100 000000000000 00000000 0 00001246679999999999999999999999862
Q ss_pred eCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCC
Q 005024 466 KAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALG 545 (718)
Q Consensus 466 k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~ 545 (718)
+..+.+|.++|... .+.+++.+|+..+.
T Consensus 149 --------~~~~~~Il~t~~~~-------------kl~~tI~sRc~~v~------------------------------- 176 (451)
T PRK06305 149 --------PQHVKFFLATTEIH-------------KIPGTILSRCQKMH------------------------------- 176 (451)
T ss_pred --------CCCceEEEEeCChH-------------hcchHHHHhceEEe-------------------------------
Confidence 23556666666443 68899999995442
Q ss_pred CCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHH
Q 005024 546 FTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQS 624 (718)
Q Consensus 546 ~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~ 624 (718)
+.+++.+.+.+++....+ ..-.+++++.+.|..+ ..++.|.+.+++.-..... + +.|+.+
T Consensus 177 f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~---------------s~gdlr~a~~~Lekl~~~~---~-~~It~~ 237 (451)
T PRK06305 177 LKRIPEETIIDKLALIAKQEGIETSREALLPIARA---------------AQGSLRDAESLYDYVVGLF---P-KSLDPD 237 (451)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhc---c-CCcCHH
Confidence 566778888888776433 3346899999999885 4689999999887544332 2 458888
Q ss_pred HHHHHHH
Q 005024 625 DVDEALR 631 (718)
Q Consensus 625 dv~~ai~ 631 (718)
+|..++.
T Consensus 238 ~V~~l~~ 244 (451)
T PRK06305 238 SVAKALG 244 (451)
T ss_pred HHHHHHC
Confidence 8876653
No 128
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.5e-12 Score=125.87 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=101.7
Q ss_pred HHHhhcCCcccccHHHHHHHHHHHhCCccccC---CCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecC-CCC
Q 005024 329 KLARSLAPEIYGHEDIKKALLLLLVGAPHRKL---KDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTG-RGS 404 (718)
Q Consensus 329 ~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~---~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~-~~~ 404 (718)
.+...+...++||+.+|+++..+.-.--.+-. .+..---+..||||+||+|+|||.||+.+|+++.-++-... ...
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred HHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence 34556777899999999988765532211100 00101123349999999999999999999999976654432 222
Q ss_pred CCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC--------------hHHHHHHHHhhcccEEEEeeCCeE
Q 005024 405 SGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD--------------ESDRTAIHEVMEQQTVSIAKAGIT 470 (718)
Q Consensus 405 ~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~--------------~~~~~~L~~~me~~~i~i~k~g~~ 470 (718)
+.+|+.+..+.+-...-......-...|..||++|||||++. +..|.+|+..+|--..++...|..
T Consensus 134 TEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGR 213 (408)
T COG1219 134 TEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGR 213 (408)
T ss_pred hhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCC
Confidence 334443332221110000011133456789999999999973 447899999999776777666665
Q ss_pred EEecCceEEEEEeCCC---CCCCC
Q 005024 471 TSLNARTAVLSAANPA---WGRYD 491 (718)
Q Consensus 471 ~~l~~~~~viaa~Np~---~g~~~ 491 (718)
..-+..+.-|-|+|-. .|.|+
T Consensus 214 KHP~Qe~iqvDT~NILFIcgGAF~ 237 (408)
T COG1219 214 KHPQQEFIQVDTSNILFICGGAFA 237 (408)
T ss_pred CCCccceEEEcccceeEEeccccc
Confidence 5555567777777755 35553
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=5.9e-11 Score=140.34 Aligned_cols=238 Identities=17% Similarity=0.161 Sum_probs=141.5
Q ss_pred HHHHHHhhcCCcccccHHHHHHHHHHHhC---C-ccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC---Ccee
Q 005024 326 IYNKLARSLAPEIYGHEDIKKALLLLLVG---A-PHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP---RGVY 398 (718)
Q Consensus 326 ~~~~l~~si~p~i~g~~~~k~~i~~~l~~---~-~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~---~~~~ 398 (718)
-+..+.+.+...|+||+.+..++..++.. | ..+..+.| .+||+||||+|||.+|+++++.+- ..+.
T Consensus 556 ~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~-------~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~ 628 (852)
T TIGR03345 556 AVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLG-------VFLLVGPSGVGKTETALALAELLYGGEQNLI 628 (852)
T ss_pred HHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCce-------EEEEECCCCCCHHHHHHHHHHHHhCCCcceE
Confidence 34567788999999999998888766642 2 21111211 589999999999999999999872 1211
Q ss_pred ecCCC-----CCCCcceeeEeecccccceeeecceEe----eecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCe
Q 005024 399 TTGRG-----SSGVGLTAAVQRDNVTNEMVLEGGALV----LADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGI 469 (718)
Q Consensus 399 ~~~~~-----~~~~~l~~~~~~~~~~g~~~~~~g~l~----~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~ 469 (718)
..... .+...|.++... +-| ..+.|.+. ....+|++||||++++++.++.|+++|++|.++.. .|.
T Consensus 629 ~~dmse~~~~~~~~~l~g~~~g--yvg--~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~-~Gr 703 (852)
T TIGR03345 629 TINMSEFQEAHTVSRLKGSPPG--YVG--YGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG-EGR 703 (852)
T ss_pred EEeHHHhhhhhhhccccCCCCC--ccc--ccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecC-CCc
Confidence 11100 000011111000 001 11223222 23568999999999999999999999999998765 455
Q ss_pred EEEecCceEEEEEeCCCCCCCCC-----C-----CCcchh------cCCChhhhcccceEEEeccCCChhHHHHHHhhhh
Q 005024 470 TTSLNARTAVLSAANPAWGRYDL-----R-----RTPAEN------INLPPALLSRFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 470 ~~~l~~~~~viaa~Np~~g~~~~-----~-----~~~~~~------~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
.+.+. ++.||.|+|-..+.|.. . ..+... -.++++|++|+| ++.+ .+.+.+.-.+|+...+
T Consensus 704 ~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F-~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 704 EIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPY-LPLDDDVLAAIVRLKL 780 (852)
T ss_pred EEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEe-CCCCHHHHHHHHHHHH
Confidence 55554 79999999976332211 1 011111 248999999998 4433 4455444444443322
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHH
Q 005024 534 YVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRI 608 (718)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirl 608 (718)
. .+.+.+.....+.-.+++++.++|.+.+. .....+|.|.++|+.
T Consensus 781 ~------------------~l~~rl~~~~gi~l~i~d~a~~~La~~g~------------~~~~GAR~L~r~Ie~ 825 (852)
T TIGR03345 781 D------------------RIARRLKENHGAELVYSEALVEHIVARCT------------EVESGARNIDAILNQ 825 (852)
T ss_pred H------------------HHHHHHHHhcCceEEECHHHHHHHHHHcC------------CCCCChHHHHHHHHH
Confidence 1 11111110001233589999999988531 223568999988863
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=6.8e-10 Score=120.66 Aligned_cols=205 Identities=16% Similarity=0.226 Sum_probs=133.4
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
.+++|++.++..+...+..|... . ++||+||||+|||++++++++.+......... .+.......
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~---~--------~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~----~~~~~~~~~ 81 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLA---Q--------ALLFCGPRGVGKTTCARILARKINQPGYDDPN----EDFSFNIFE 81 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCC---e--------EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC----CCCCcceEE
Confidence 37899999999999888776422 1 79999999999999999999886432111000 000000000
Q ss_pred -cccc--c--ce--eee-cce-EeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 416 -DNVT--N--EM--VLE-GGA-LVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 416 -~~~~--g--~~--~~~-~g~-l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
+... + .. ..+ ... -..++..+++|||++.+....++.|+..|++. +..+.+|.++|..
T Consensus 82 l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-------------~~~~~~Il~~~~~ 148 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-------------PAHAIFILATTEK 148 (367)
T ss_pred eccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCceEEEEEeCCc
Confidence 0000 0 00 000 000 01235679999999999998899999988752 2345566666533
Q ss_pred CCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cC
Q 005024 487 WGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LS 565 (718)
Q Consensus 487 ~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~ 565 (718)
. .+.+++.+|+..+ .+.+++.+.+..++..... ..
T Consensus 149 ~-------------kl~~~l~sr~~~v-------------------------------~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 149 H-------------KIIPTILSRCQIF-------------------------------DFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred c-------------cCCHHHHhcceeE-------------------------------ecCCccHHHHHHHHHHHHHHcC
Confidence 3 6888999999432 2455667777777765433 33
Q ss_pred CCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 566 PCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 566 p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
-.+++++.+.|... ..++.|.+.+.+......+ +.+ ||.+||..++.
T Consensus 185 ~~i~~~al~~l~~~---------------~~gdlr~~~~~lekl~~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 185 IKFEDDALHIIAQK---------------ADGALRDALSIFDRVVTFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred CCCCHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHhc---CCC-CCHHHHHHHhC
Confidence 35899999999885 4689999999888665554 333 99999887764
No 131
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.28 E-value=3.6e-10 Score=122.43 Aligned_cols=209 Identities=18% Similarity=0.202 Sum_probs=133.1
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce----eecCCCCCC----C
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV----YTTGRGSSG----V 407 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~~~~~~----~ 407 (718)
.+++|++.++..+..++..|... . .+||+||||+|||++|+.+++.+.... -.||...+. .
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~---~--------~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIA---H--------AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC---e--------EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 47899999999999888776422 1 478999999999999999998863210 011110000 0
Q ss_pred c-ceeeEeeccc--ccce----ee-ecc-eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 408 G-LTAAVQRDNV--TNEM----VL-EGG-ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 408 ~-l~~~~~~~~~--~g~~----~~-~~g-~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
+ .......++. .+.. .. ... .-..++..+++|||++.++...++.|+..+|+. +..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-------------~~~~~ 149 (355)
T TIGR02397 83 GSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVV 149 (355)
T ss_pred CCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-------------cccee
Confidence 0 0000000100 0000 00 000 012245679999999999999999999999752 34566
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYI 558 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i 558 (718)
+|.++|... .+.+++.+|+..+. +.+++.+.+.+++
T Consensus 150 lIl~~~~~~-------------~l~~~l~sr~~~~~-------------------------------~~~~~~~~l~~~l 185 (355)
T TIGR02397 150 FILATTEPH-------------KIPATILSRCQRFD-------------------------------FKRIPLEDIVERL 185 (355)
T ss_pred EEEEeCCHH-------------HHHHHHHhheeEEE-------------------------------cCCCCHHHHHHHH
Confidence 666666433 57788999984332 3456666777777
Q ss_pred HHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 559 SAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 559 ~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
.... +..-.+++++.+.+.+. ..+++|.+.+.+.-+...+ ...|+.+||.+++.
T Consensus 186 ~~~~~~~g~~i~~~a~~~l~~~---------------~~g~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 186 KKILDKEGIKIEDEALELIARA---------------ADGSLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH---------------cCCChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 6543 33346899999998875 4678999988887555543 24599999988764
No 132
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.28 E-value=1.1e-10 Score=138.86 Aligned_cols=236 Identities=15% Similarity=0.174 Sum_probs=140.3
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHhCC----ccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC---Cceee
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLVGA----PHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP---RGVYT 399 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~~~----~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~---~~~~~ 399 (718)
+..+.+.+...|+||+.++.++..++... ..+..+. .++||+||||||||.+|+++++.+- ..+..
T Consensus 500 l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~-------~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~ 572 (821)
T CHL00095 500 LLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPI-------ASFLFSGPTGVGKTELTKALASYFFGSEDAMIR 572 (821)
T ss_pred HHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCc-------eEEEEECCCCCcHHHHHHHHHHHhcCCccceEE
Confidence 45677888999999999999888776532 1111111 1589999999999999999999862 12221
Q ss_pred cCCCC--C---CCcceeeEeecccccceeeecceE----eeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeE
Q 005024 400 TGRGS--S---GVGLTAAVQRDNVTNEMVLEGGAL----VLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGIT 470 (718)
Q Consensus 400 ~~~~~--~---~~~l~~~~~~~~~~g~~~~~~g~l----~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~ 470 (718)
..... . ...+.++.. .+-| .-+.|.+ ......|++|||+++++++.++.|+++|++|.++... |..
T Consensus 573 ~d~s~~~~~~~~~~l~g~~~--gyvg--~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~-g~~ 647 (821)
T CHL00095 573 LDMSEYMEKHTVSKLIGSPP--GYVG--YNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK-GRT 647 (821)
T ss_pred EEchhccccccHHHhcCCCC--cccC--cCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCC-CcE
Confidence 11100 0 000111000 0000 0011111 1223479999999999999999999999999998753 555
Q ss_pred EEecCceEEEEEeCCCCC---------CCCCCC------C---cchh------cCCChhhhcccceEEEeccCCChhHHH
Q 005024 471 TSLNARTAVLSAANPAWG---------RYDLRR------T---PAEN------INLPPALLSRFDLLWLILDRADMDSDL 526 (718)
Q Consensus 471 ~~l~~~~~viaa~Np~~g---------~~~~~~------~---~~~~------~~l~~~ll~Rfdli~~~~d~~~~~~d~ 526 (718)
..+ .++.||.|+|.... .|.... . +.+. -.+++.|++|+|-++++ .+.+.+.-.
T Consensus 648 v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F-~pL~~~~l~ 725 (821)
T CHL00095 648 IDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVF-RQLTKNDVW 725 (821)
T ss_pred Eec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEe-CCCCHHHHH
Confidence 544 48999999996521 122110 0 0111 13889999999887765 344444444
Q ss_pred HHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHH
Q 005024 527 EMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSIL 606 (718)
Q Consensus 527 ~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~li 606 (718)
+|++..+. .+.+.+. .+.+.-.+++++.++|.+.. ......+|.|..++
T Consensus 726 ~Iv~~~l~------------------~l~~rl~-~~~i~l~~~~~~~~~La~~~------------~~~~~GAR~l~r~i 774 (821)
T CHL00095 726 EIAEIMLK------------------NLFKRLN-EQGIQLEVTERIKTLLIEEG------------YNPLYGARPLRRAI 774 (821)
T ss_pred HHHHHHHH------------------HHHHHHH-HCCcEEEECHHHHHHHHHhc------------CCCCCChhhHHHHH
Confidence 44443322 1111111 11234468999999988841 02245678888877
Q ss_pred H
Q 005024 607 R 607 (718)
Q Consensus 607 r 607 (718)
+
T Consensus 775 ~ 775 (821)
T CHL00095 775 M 775 (821)
T ss_pred H
Confidence 5
No 133
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=4.3e-10 Score=128.63 Aligned_cols=217 Identities=18% Similarity=0.203 Sum_probs=136.6
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce-----eecC
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV-----YTTG 401 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~-----~~~~ 401 (718)
+++....-..+|+|++.++..|..++..|... . .+||+||||+|||++|+.+++.+.-.. -.||
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~---~--------a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEGRVA---H--------AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCc---e--------EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 34444444558999999999998888776421 0 469999999999999999998873110 0111
Q ss_pred CCCCC----CcceeeE-eeccc--ccc-----e--eeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeC
Q 005024 402 RGSSG----VGLTAAV-QRDNV--TNE-----M--VLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKA 467 (718)
Q Consensus 402 ~~~~~----~~l~~~~-~~~~~--~g~-----~--~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~ 467 (718)
..... .+....+ ..+.. .+. . ...... ..++..|++|||+++|+.+.++.|+..||+.
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p-~~~~~kVvIIDEa~~L~~~a~naLLk~LEep------- 147 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP-ALARYKVYIIDEVHMLSTAAFNALLKTLEEP------- 147 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc-ccCCeEEEEEeChHhCCHHHHHHHHHHHhcC-------
Confidence 11000 0000000 00110 000 0 000011 2356789999999999999999999999862
Q ss_pred CeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCC
Q 005024 468 GITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFT 547 (718)
Q Consensus 468 g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~ 547 (718)
+..+.+|.+++... .+...+.+|+..+. +.
T Consensus 148 ------p~~tv~Il~t~~~~-------------kll~tI~SR~~~i~-------------------------------f~ 177 (585)
T PRK14950 148 ------PPHAIFILATTEVH-------------KVPATILSRCQRFD-------------------------------FH 177 (585)
T ss_pred ------CCCeEEEEEeCChh-------------hhhHHHHhccceee-------------------------------CC
Confidence 23455555554332 57778899984432 44
Q ss_pred CCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 005024 548 PLEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDV 626 (718)
Q Consensus 548 ~~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv 626 (718)
+++.+.+..++.... +..-.+++++.+.|... ..+++|.+.+++...... ....|+.++|
T Consensus 178 ~l~~~el~~~L~~~a~~egl~i~~eal~~La~~---------------s~Gdlr~al~~LekL~~y----~~~~It~e~V 238 (585)
T PRK14950 178 RHSVADMAAHLRKIAAAEGINLEPGALEAIARA---------------ATGSMRDAENLLQQLATT----YGGEISLSQV 238 (585)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHh----cCCCCCHHHH
Confidence 566667777766543 33346899999988875 468999999998754332 3467999999
Q ss_pred HHHHH
Q 005024 627 DEALR 631 (718)
Q Consensus 627 ~~ai~ 631 (718)
..++.
T Consensus 239 ~~ll~ 243 (585)
T PRK14950 239 QSLLG 243 (585)
T ss_pred HHHhc
Confidence 87654
No 134
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.2e-12 Score=130.78 Aligned_cols=172 Identities=24% Similarity=0.317 Sum_probs=109.9
Q ss_pred cccccHHHHHHHHHHHhCC-cccc-CCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEe
Q 005024 337 EIYGHEDIKKALLLLLVGA-PHRK-LKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQ 414 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~-~~~~-~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (718)
+|-|.+.+|.++.....=. ..+. ...|--.+...+|||+||||||||++|+++++.+.-.+...+.+ .++.
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s----~lt~--- 165 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS----NLTS--- 165 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc----ccch---
Confidence 7889999988876333211 1111 11333455666899999999999999999999976544322111 1221
Q ss_pred ecccccceeeecc-----eEeee---cCCeeeecccccCChHHHHHHHHhhc--ccEEEEeeCCeEEEecCceEEEEEeC
Q 005024 415 RDNVTNEMVLEGG-----ALVLA---DMGICAIDEFDKMDESDRTAIHEVME--QQTVSIAKAGITTSLNARTAVLSAAN 484 (718)
Q Consensus 415 ~~~~~g~~~~~~g-----~l~~a---~~gil~iDEi~~~~~~~~~~L~~~me--~~~i~i~k~g~~~~l~~~~~viaa~N 484 (718)
.|..++- .+.+| .+.++||||+|.+-..-++.=||+|. ...+-...+|....-..++.|+||||
T Consensus 166 ------KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 166 ------KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred ------hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 2222211 12222 35799999999874332333344432 11222234577666677899999999
Q ss_pred CCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhh
Q 005024 485 PAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYV 535 (718)
Q Consensus 485 p~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~ 535 (718)
.+. ++++|+++|+.-.|.+ +.|+.....+|.+-++..
T Consensus 240 RP~-------------DlDeAiiRR~p~rf~V-~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 240 RPF-------------DLDEAIIRRLPRRFHV-GLPDAEQRRKILKVILKK 276 (386)
T ss_pred CCc-------------cHHHHHHHhCcceeee-CCCchhhHHHHHHHHhcc
Confidence 997 8999999999766654 889988888887776653
No 135
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=2.7e-10 Score=129.12 Aligned_cols=211 Identities=17% Similarity=0.167 Sum_probs=138.9
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce------------eecCCC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV------------YTTGRG 403 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~------------~~~~~~ 403 (718)
.+|+||+.++..|..++.+|... . .+||+||||+|||++|+.+++.+.-.. -.||..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~---h--------a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVG---H--------GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC---e--------eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 48999999999998888877532 1 489999999999999999998873210 112221
Q ss_pred CC------CCcceeeEeeccc--cccee-------eecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCC
Q 005024 404 SS------GVGLTAAVQRDNV--TNEMV-------LEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAG 468 (718)
Q Consensus 404 ~~------~~~l~~~~~~~~~--~g~~~-------~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g 468 (718)
.+ ...+.... .+.. .+.-. +.-+. ..++..|++|||+++|+...+++|+..||+-
T Consensus 85 ~sC~~~~~g~~~n~~~-~d~~s~~~vd~Ir~l~e~~~~~P-~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-------- 154 (620)
T PRK14954 85 ESCRDFDAGTSLNISE-FDAASNNSVDDIRQLRENVRYGP-QKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-------- 154 (620)
T ss_pred HHHHHHhccCCCCeEE-ecccccCCHHHHHHHHHHHHhhh-hcCCCEEEEEeChhhcCHHHHHHHHHHHhCC--------
Confidence 10 00000000 0110 00000 00011 2356679999999999999999999999962
Q ss_pred eEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCC
Q 005024 469 ITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTP 548 (718)
Q Consensus 469 ~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 548 (718)
+..+.+|.+++... .+.+++.+|+..+ .+.+
T Consensus 155 -----p~~tv~IL~t~~~~-------------kLl~TI~SRc~~v-------------------------------ef~~ 185 (620)
T PRK14954 155 -----PPHAIFIFATTELH-------------KIPATIASRCQRF-------------------------------NFKR 185 (620)
T ss_pred -----CCCeEEEEEeCChh-------------hhhHHHHhhceEE-------------------------------ecCC
Confidence 23444454454322 6888999999444 2566
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHh-cCCCCccHHHH
Q 005024 549 LEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARL-RFSETVAQSDV 626 (718)
Q Consensus 549 ~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l-~~~~~V~~~dv 626 (718)
++.+.+.+++..... ..-.+++++.+.|... ..++.|.+.+++....+++.- .....|+.+||
T Consensus 186 l~~~ei~~~L~~i~~~egi~I~~eal~~La~~---------------s~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V 250 (620)
T PRK14954 186 IPLDEIQSQLQMICRAEGIQIDADALQLIARK---------------AQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGV 250 (620)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------hCCCHHHHHHHHHHHHHhccccccCCccCHHHH
Confidence 788888888876544 3346999999999885 468999999998765555411 12457999899
Q ss_pred HHHHH
Q 005024 627 DEALR 631 (718)
Q Consensus 627 ~~ai~ 631 (718)
.+++.
T Consensus 251 ~~lv~ 255 (620)
T PRK14954 251 AELLN 255 (620)
T ss_pred HHHHc
Confidence 87763
No 136
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=4.8e-10 Score=127.02 Aligned_cols=209 Identities=22% Similarity=0.205 Sum_probs=139.2
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce---------eecCCCCCC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV---------YTTGRGSSG 406 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~---------~~~~~~~~~ 406 (718)
.+++||+.+++.|..++..|... . .+||+||+|+|||++|+.+++.+.-.. ..||.....
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~---h--------a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C 92 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIA---Q--------AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHC 92 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC---c--------eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHH
Confidence 38999999999999888877532 1 599999999999999999999873210 011111000
Q ss_pred ----CcceeeE-eecc--ccccee-------eecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEE
Q 005024 407 ----VGLTAAV-QRDN--VTNEMV-------LEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTS 472 (718)
Q Consensus 407 ----~~l~~~~-~~~~--~~g~~~-------~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~ 472 (718)
.+....+ ..++ ..|.-. ..... ..+...|++|||+++|+...+++|+..||+
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEe------------- 158 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRP-VSARYKVYIIDEVHMLSTAAFNALLKTLEE------------- 158 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHh-------------
Confidence 0000000 0010 011000 00011 235678999999999999999999999985
Q ss_pred ecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHH
Q 005024 473 LNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPA 552 (718)
Q Consensus 473 l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 552 (718)
.+..+.+|.+++... .+...+.||+-. + .+.+++.+
T Consensus 159 Pp~~~~fIl~tte~~-------------kll~tI~SRcq~-~------------------------------~f~~l~~~ 194 (598)
T PRK09111 159 PPPHVKFIFATTEIR-------------KVPVTVLSRCQR-F------------------------------DLRRIEAD 194 (598)
T ss_pred CCCCeEEEEEeCChh-------------hhhHHHHhheeE-E------------------------------EecCCCHH
Confidence 244566666665443 577889999943 3 24557777
Q ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 553 ILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 553 ~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
.+.+++....+ ..-.+++++.+.|... ..+++|.+.+++.-+.++ +...|+.+||...+.
T Consensus 195 el~~~L~~i~~kegi~i~~eAl~lIa~~---------------a~Gdlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 195 VLAAHLSRIAAKEGVEVEDEALALIARA---------------AEGSVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 88888776543 3446899999999885 478999999999765444 345799999998765
Q ss_pred H
Q 005024 632 L 632 (718)
Q Consensus 632 l 632 (718)
.
T Consensus 256 ~ 256 (598)
T PRK09111 256 L 256 (598)
T ss_pred C
Confidence 3
No 137
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.26 E-value=1.1e-10 Score=117.99 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=111.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC----ceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR----GVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
+++|+|+||||||++|++++..+.. ..+..... + .... ....+.++++|||++.++
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~-----~---------~~~~------~~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS-----P---------LLAF------DFDPEAELYAVDDVERLD 103 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH-----h---------HHHH------hhcccCCEEEEeChhhcC
Confidence 7999999999999999999987511 11111100 0 0000 012346799999999999
Q ss_pred hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc--eEEEeccCCChhH
Q 005024 447 ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD--LLWLILDRADMDS 524 (718)
Q Consensus 447 ~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd--li~~~~d~~~~~~ 524 (718)
...+..|...++.-. -.....+|.+++.....+ .+.+.|.|||. +.+.+ ..++
T Consensus 104 ~~~~~~L~~~~~~~~-----------~~~~~~vl~~~~~~~~~~----------~l~~~L~sr~~~~~~i~l-~pl~--- 158 (227)
T PRK08903 104 DAQQIALFNLFNRVR-----------AHGQGALLVAGPAAPLAL----------PLREDLRTRLGWGLVYEL-KPLS--- 158 (227)
T ss_pred chHHHHHHHHHHHHH-----------HcCCcEEEEeCCCCHHhC----------CCCHHHHHHHhcCeEEEe-cCCC---
Confidence 888888988886421 011223444554322212 46688899984 34332 3333
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHH
Q 005024 525 DLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA-ARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLL 603 (718)
Q Consensus 525 d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~ 603 (718)
.+....++.. +.+....+++++.++|.. .|++|+|+|.
T Consensus 159 --------------------------~~~~~~~l~~~~~~~~v~l~~~al~~L~~---------------~~~gn~~~l~ 197 (227)
T PRK08903 159 --------------------------DADKIAALKAAAAERGLQLADEVPDYLLT---------------HFRRDMPSLM 197 (227)
T ss_pred --------------------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHH---------------hccCCHHHHH
Confidence 2222223322 223456799999999988 3999999999
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 604 SILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 604 ~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
++++.....|.... ..||...+.+++.
T Consensus 198 ~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 198 ALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 99997666665544 5799999988864
No 138
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.26 E-value=5e-11 Score=120.44 Aligned_cols=176 Identities=20% Similarity=0.288 Sum_probs=110.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc----eeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG----VYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
+++|+|+||||||++|+++++.+... .|..... +. ...... + . .....++++|||++.++
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~-----~~-----~~~~~~--~-~---~~~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE-----LA-----QADPEV--L-E---GLEQADLVCLDDVEAIA 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH-----HH-----HhHHHH--H-h---hcccCCEEEEeChhhhc
Confidence 89999999999999999999876311 1111000 00 000000 0 0 01234799999999998
Q ss_pred hHH--HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCC-hhhhcccc--eEEEeccCCC
Q 005024 447 ESD--RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLP-PALLSRFD--LLWLILDRAD 521 (718)
Q Consensus 447 ~~~--~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~-~~ll~Rfd--li~~~~d~~~ 521 (718)
... +..|.++++... ..+..+|.|+|.....+ .+. +.|.+||. ..+.
T Consensus 104 ~~~~~~~~L~~~l~~~~------------~~~~~iIits~~~~~~~----------~~~~~~L~~r~~~~~~i~------ 155 (226)
T TIGR03420 104 GQPEWQEALFHLYNRVR------------EAGGRLLIAGRAAPAQL----------PLRLPDLRTRLAWGLVFQ------ 155 (226)
T ss_pred CChHHHHHHHHHHHHHH------------HcCCeEEEECCCChHHC----------CcccHHHHHHHhcCeeEe------
Confidence 744 777887765311 01124666777543222 333 77888885 2322
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVR 600 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R 600 (718)
+++++.+.+..++.... +....+++++.+.|..+ |++|+|
T Consensus 156 ------------------------l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~---------------~~gn~r 196 (226)
T TIGR03420 156 ------------------------LPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH---------------GSRDMG 196 (226)
T ss_pred ------------------------cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---------------ccCCHH
Confidence 33444445555554322 33456899999999883 899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 601 TLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 601 ~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
+|.+++..+.+.|...+ ..|+.+.+.+++
T Consensus 197 ~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 197 SLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 99999998887665544 469998888765
No 139
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.25 E-value=1.2e-11 Score=136.28 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=81.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCC-CCCCCcceeeEeeccccccee--ee---cceEeee---cCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGR-GSSGVGLTAAVQRDNVTNEMV--LE---GGALVLA---DMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~~~--~~---~g~l~~a---~~gil~iDE 441 (718)
++||+||||||||++++++++.+....+.... ......+........+.|+.. +. ..+...+ ...|+||||
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDE 297 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDE 297 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEeh
Confidence 79999999999999999999988654332000 000000000000001111100 00 0000011 245999999
Q ss_pred cccCChH------------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc-
Q 005024 442 FDKMDES------------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS- 508 (718)
Q Consensus 442 i~~~~~~------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~- 508 (718)
+|.+-.. ..+.|+..|+ |... ..++.||+|||... .|++++++
T Consensus 298 iD~L~~~R~~~~s~d~e~~il~~LL~~LD---------gl~~--~~~ViVI~ATN~~d-------------~LDpALlRp 353 (512)
T TIGR03689 298 MDSIFRTRGSGVSSDVETTVVPQLLSELD---------GVES--LDNVIVIGASNRED-------------MIDPAILRP 353 (512)
T ss_pred hhhhhcccCCCccchHHHHHHHHHHHHhc---------cccc--CCceEEEeccCChh-------------hCCHhhcCc
Confidence 9987321 1234555554 2111 13678999999887 79999998
Q ss_pred -ccceEEEeccCCChhHHHHHHhhhhh
Q 005024 509 -RFDLLWLILDRADMDSDLEMARHVVY 534 (718)
Q Consensus 509 -Rfdli~~~~d~~~~~~d~~i~~~il~ 534 (718)
|||..+.+ +.|+.+....|.++.+.
T Consensus 354 GRfD~~I~~-~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 354 GRLDVKIRI-ERPDAEAAADIFSKYLT 379 (512)
T ss_pred cccceEEEe-CCCCHHHHHHHHHHHhh
Confidence 99988654 88998888888776654
No 140
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.25 E-value=7.7e-12 Score=123.12 Aligned_cols=223 Identities=18% Similarity=0.176 Sum_probs=148.8
Q ss_pred cccceeeecCCCcchHHHHHHHHHHHC-------CCceee-cCCCC--CC-CcceeeEeecccccceeeecceEeeecCC
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINVA-------PRGVYT-TGRGS--SG-VGLTAAVQRDNVTNEMVLEGGALVLADMG 435 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~~-------~~~~~~-~~~~~--~~-~~l~~~~~~~~~~g~~~~~~g~l~~a~~g 435 (718)
|+..++||.||+|.|||.||+.|..+- .+-+-+ |...- ++ ..|.+ .++..++|...-.+|.+.-|+||
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg-hvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG-HVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh-hhccccccchhhhhhhhccCCCc
Confidence 444489999999999999999987653 111111 21111 10 01222 24566778777888999999999
Q ss_pred eeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC------CCCCCCCCCcchhcCCChhhhcc
Q 005024 436 ICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA------WGRYDLRRTPAENINLPPALLSR 509 (718)
Q Consensus 436 il~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~------~g~~~~~~~~~~~~~l~~~ll~R 509 (718)
.+|+|||..+..+.|..|+.++|+..+... |......+++.+||.+-.+ +|+| .+.|.-|
T Consensus 285 mlfldeigelgadeqamllkaieekrf~pf--gsdr~v~sdfqliagtvrdlrq~vaeg~f------------redl~ar 350 (531)
T COG4650 285 MLFLDEIGELGADEQAMLLKAIEEKRFYPF--GSDRQVSSDFQLIAGTVRDLRQLVAEGKF------------REDLYAR 350 (531)
T ss_pred eEehHhhhhcCccHHHHHHHHHHhhccCCC--CCccccccchHHhhhhHHHHHHHHhccch------------HHHHHHh
Confidence 999999999999999999999999988776 8888888999999988766 5654 4455555
Q ss_pred cceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhh
Q 005024 510 FDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTP-LEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEA 588 (718)
Q Consensus 510 fdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~ 588 (718)
..|.-. +.|.. ....+++.| ++. +|.+....... ...+..++......+.
T Consensus 351 inlwtf--~lpgl-----------------~qr~ediepnldy-elerha~~~g~-~vrfntearra~l~fa-------- 401 (531)
T COG4650 351 INLWTF--TLPGL-----------------RQRQEDIEPNLDY-ELERHASLTGD-SVRFNTEARRAWLAFA-------- 401 (531)
T ss_pred hheeee--ecccc-----------------ccCccccCCCccH-HHHHHHHhhCc-eeeeehHHHHHHHHhc--------
Confidence 554332 22221 112245555 444 34443332221 2257777776655442
Q ss_pred hcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 589 KSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 589 ~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
.+....|.+|.|+|..-+-....+| .+..|+++-|++-|.-+..+
T Consensus 402 ~spqa~w~gnfrelsasvtrmatla---d~grit~~~ve~ei~rlr~~ 446 (531)
T COG4650 402 TSPQATWRGNFRELSASVTRMATLA---DSGRITLDVVEDEINRLRYN 446 (531)
T ss_pred cCcchhhcccHHHHhHHHHHHHHHh---cCCceeHHHHHHHHHHHHHH
Confidence 1334579999999987775555556 77889999888877666554
No 141
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.5e-10 Score=126.78 Aligned_cols=221 Identities=18% Similarity=0.223 Sum_probs=151.7
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce----eecCC
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV----YTTGR 402 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~~ 402 (718)
|.+.....+++++||+.+.++|..++..+... . --||.||.|||||++||.+|+.+.-.. -.||.
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~---h--------AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALENGRIA---H--------AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHhCcch---h--------hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 44444556678999999999999999877522 1 478999999999999999999884221 01222
Q ss_pred CCCCCccee-----eEeeccc--ccce---ee-e-c-ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCe
Q 005024 403 GSSGVGLTA-----AVQRDNV--TNEM---VL-E-G-GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGI 469 (718)
Q Consensus 403 ~~~~~~l~~-----~~~~~~~--~g~~---~~-~-~-g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~ 469 (718)
.....++.. .+..|.. +|.- .+ + . -+-..+...|.+|||+++++....++||.-+|+-
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP--------- 146 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP--------- 146 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC---------
Confidence 111001110 0111111 1100 00 0 0 1112345679999999999999999999999864
Q ss_pred EEEecCceEEE-EEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCC
Q 005024 470 TTSLNARTAVL-SAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTP 548 (718)
Q Consensus 470 ~~~l~~~~~vi-aa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 548 (718)
|.++.+| ||++|. ++|..++||+ ..| ++..
T Consensus 147 ----P~hV~FIlATTe~~--------------Kip~TIlSRc-q~f------------------------------~fkr 177 (515)
T COG2812 147 ----PSHVKFILATTEPQ--------------KIPNTILSRC-QRF------------------------------DFKR 177 (515)
T ss_pred ----ccCeEEEEecCCcC--------------cCchhhhhcc-ccc------------------------------cccC
Confidence 4455554 555554 7999999999 333 3567
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 005024 549 LEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD 627 (718)
Q Consensus 549 ~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 627 (718)
++.+.+..++..... -.-.+.+++...|.+. ..|+.|...+++..+.+.+ .+.|+.++|.
T Consensus 178 i~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~---------------a~Gs~RDalslLDq~i~~~----~~~It~~~v~ 238 (515)
T COG2812 178 LDLEEIAKHLAAILDKEGINIEEDALSLIARA---------------AEGSLRDALSLLDQAIAFG----EGEITLESVR 238 (515)
T ss_pred CCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH---------------cCCChhhHHHHHHHHHHcc----CCcccHHHHH
Confidence 889999999988765 3446899999998874 5799999999999877664 3789999999
Q ss_pred HHHHHHhh
Q 005024 628 EALRLMQM 635 (718)
Q Consensus 628 ~ai~l~~~ 635 (718)
..+.++..
T Consensus 239 ~~lG~~~~ 246 (515)
T COG2812 239 DMLGLTDI 246 (515)
T ss_pred HHhCCCCH
Confidence 88776543
No 142
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.24 E-value=1.8e-10 Score=113.55 Aligned_cols=147 Identities=23% Similarity=0.270 Sum_probs=113.0
Q ss_pred CCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
.|++||||+++++-+....|++++|.. -...||.|+|.-.........+..-..+|+.|++|. ++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~--------------iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~I 361 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESP--------------IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LI 361 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCC--------------CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eE
Confidence 589999999999999999999999853 224577888866322222223333447999999998 55
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHhhHhhhhcCC
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRL-SPCVPRELEEYIAAAYSNIRQEEAKSNT 592 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~p~ls~~~~~~l~~~y~~lr~~~~~~~~ 592 (718)
+. ..+++.+.+++++....+. .-.+++++.+.+...
T Consensus 362 ir------------------------------t~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~------------- 398 (456)
T KOG1942|consen 362 IR------------------------------TLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEI------------- 398 (456)
T ss_pred Ee------------------------------eccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhh-------------
Confidence 43 2457788888888876554 346899999998875
Q ss_pred CCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccc
Q 005024 593 PHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFS 639 (718)
Q Consensus 593 ~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~ 639 (718)
....|.|....|+-=|..+|+.++++.|..+||+++-.++...+.+
T Consensus 399 -gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~s 444 (456)
T KOG1942|consen 399 -GTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAKRS 444 (456)
T ss_pred -ccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhchhh
Confidence 3567889999999888899999999999999999999998766543
No 143
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.24 E-value=8.5e-11 Score=123.08 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=72.6
Q ss_pred cceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCC-CCCCCCCCcchhcCCCh
Q 005024 426 GGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAW-GRYDLRRTPAENINLPP 504 (718)
Q Consensus 426 ~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~ 504 (718)
.|.+..|++|++.++|+.+.+.+.+..|+.+++++.+.+. |....++.+..|||++|+.. ..| .+.+..+
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e~~~~-------~~~k~~e 299 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESEWQRF-------KSNKKNE 299 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHHHhhh-------hccccch
Confidence 4899999999999999999999999999999999999886 55557778889999999983 222 1124579
Q ss_pred hhhcccceEEEeccCCC-hhHHHHHHhhhh
Q 005024 505 ALLSRFDLLWLILDRAD-MDSDLEMARHVV 533 (718)
Q Consensus 505 ~ll~Rfdli~~~~d~~~-~~~d~~i~~~il 533 (718)
||++||..+.+ .++- ...+.+|-+..+
T Consensus 300 af~dR~~~i~v--pY~l~~~~E~~Iy~k~~ 327 (361)
T smart00763 300 ALLDRIIKVKV--PYCLRVSEEAQIYEKLL 327 (361)
T ss_pred hhhhceEEEeC--CCcCCHHHHHHHHHHHh
Confidence 99999975443 3333 333444444333
No 144
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.2e-10 Score=131.16 Aligned_cols=189 Identities=25% Similarity=0.232 Sum_probs=111.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCC-CC--CCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRG-SS--GVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
.+||+||||||||.||+++|..+.-.++++... .. ..|.-++-+++-+.-... ....|+||||||....
T Consensus 346 GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~--------~aP~iifideida~~~ 417 (774)
T KOG0731|consen 346 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARK--------NAPSIIFIDEIDAVGR 417 (774)
T ss_pred ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhc--------cCCeEEEecccccccc
Confidence 599999999999999999999998777763221 10 011112222221111000 0246999999997632
Q ss_pred HH---------------HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--cc
Q 005024 448 SD---------------RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RF 510 (718)
Q Consensus 448 ~~---------------~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rf 510 (718)
.. .+.|+--|+ |.... ..+.|+|+||... -+++||++ ||
T Consensus 418 ~r~G~~~~~~~~e~e~tlnQll~emD---------gf~~~--~~vi~~a~tnr~d-------------~ld~allrpGRf 473 (774)
T KOG0731|consen 418 KRGGKGTGGGQDEREQTLNQLLVEMD---------GFETS--KGVIVLAATNRPD-------------ILDPALLRPGRF 473 (774)
T ss_pred cccccccCCCChHHHHHHHHHHHHhc---------CCcCC--CcEEEEeccCCcc-------------ccCHHhcCCCcc
Confidence 21 123333333 43332 5789999999887 68999998 99
Q ss_pred ceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhc
Q 005024 511 DLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKS 590 (718)
Q Consensus 511 dli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~ 590 (718)
|-.+.+ |.|+.....+|. ..|... . .++.+..++-. +.
T Consensus 474 dr~i~i-~~p~~~~r~~i~----~~h~~~------------------------~--~~~~e~~dl~~-~a---------- 511 (774)
T KOG0731|consen 474 DRQIQI-DLPDVKGRASIL----KVHLRK------------------------K--KLDDEDVDLSK-LA---------- 511 (774)
T ss_pred ccceec-cCCchhhhHHHH----HHHhhc------------------------c--CCCcchhhHHH-HH----------
Confidence 987664 888877666552 222111 1 11111111111 00
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Q 005024 591 NTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQ 634 (718)
Q Consensus 591 ~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~ 634 (718)
...-..+.-.|.+++.-|..+|--+.+..|+..|+..|++.+.
T Consensus 512 -~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 512 -SLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVI 554 (774)
T ss_pred -hcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHh
Confidence 0022344556777777777777777788888888888887433
No 145
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.22 E-value=1.8e-10 Score=136.61 Aligned_cols=236 Identities=16% Similarity=0.182 Sum_probs=139.3
Q ss_pred HHHHHHhhcCCcccccHHHHHHHHHHHh----CCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---ee
Q 005024 326 IYNKLARSLAPEIYGHEDIKKALLLLLV----GAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---VY 398 (718)
Q Consensus 326 ~~~~l~~si~p~i~g~~~~k~~i~~~l~----~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~~ 398 (718)
-+..+.+.+...++|++.+...+..++. |...+..+.| ++||+||||||||.+|+++++.+... +.
T Consensus 558 ~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~-------~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i 630 (857)
T PRK10865 558 KLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIG-------SFLFLGPTGVGKTELCKALANFMFDSDDAMV 630 (857)
T ss_pred HHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCc-------eEEEECCCCCCHHHHHHHHHHHhhcCCCcEE
Confidence 3456778899999999998777765553 2222211212 69999999999999999999887321 21
Q ss_pred e--cCCCCC---CCcceeeEeecccccceeeecc----eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCe
Q 005024 399 T--TGRGSS---GVGLTAAVQRDNVTNEMVLEGG----ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGI 469 (718)
Q Consensus 399 ~--~~~~~~---~~~l~~~~~~~~~~g~~~~~~g----~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~ 469 (718)
. +..... ...+.++.. .+.| .-+.| ++.....++++|||++++++..++.|+++|++|.++.. .|.
T Consensus 631 ~id~se~~~~~~~~~LiG~~p--gy~g--~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~-~gr 705 (857)
T PRK10865 631 RIDMSEFMEKHSVSRLVGAPP--GYVG--YEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG-QGR 705 (857)
T ss_pred EEEhHHhhhhhhHHHHhCCCC--cccc--cchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC-Cce
Confidence 1 111000 000110000 0000 00111 11122458999999999999999999999999988753 243
Q ss_pred EEEecCceEEEEEeCCCCC----CCCCC--CCcch------hcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhcc
Q 005024 470 TTSLNARTAVLSAANPAWG----RYDLR--RTPAE------NINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQ 537 (718)
Q Consensus 470 ~~~l~~~~~viaa~Np~~g----~~~~~--~~~~~------~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~ 537 (718)
...+ .++.||+|+|.... +|... ..+.+ .-.+.++|++|+|.++++ .+++.+.-..|+.+.+
T Consensus 706 ~vd~-rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF-~PL~~edl~~Iv~~~L---- 779 (857)
T PRK10865 706 TVDF-RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVF-HPLGEQHIASIAQIQL---- 779 (857)
T ss_pred EEee-cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEec-CCCCHHHHHHHHHHHH----
Confidence 3333 25779999997421 12111 00111 125889999999988775 3344444444443332
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHH
Q 005024 538 NKESPALGFTPLEPAILRAYISAAR--RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRI 608 (718)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~~~i~~~~--~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirl 608 (718)
.+.....+ .....+++++.++|.++- ......+|.|..+|+.
T Consensus 780 -----------------~~l~~rl~~~gi~l~is~~al~~L~~~g------------y~~~~GARpL~r~I~~ 823 (857)
T PRK10865 780 -----------------QRLYKRLEERGYEIHISDEALKLLSENG------------YDPVYGARPLKRAIQQ 823 (857)
T ss_pred -----------------HHHHHHHHhCCCcCcCCHHHHHHHHHcC------------CCccCChHHHHHHHHH
Confidence 22111111 234568999999998741 1234568999888863
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=2e-09 Score=122.87 Aligned_cols=206 Identities=16% Similarity=0.163 Sum_probs=138.2
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCc-----eeecCCCCC----
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRG-----VYTTGRGSS---- 405 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~-----~~~~~~~~~---- 405 (718)
.+|+||+.++..|..++..|... | +||+||+|+|||++|+.+++.+.-. ...||...+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~------------hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLA------------HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 48999999999999998877533 5 7899999999999999999986311 001221100
Q ss_pred --CCcceeeEeeccc--ccceee-------ecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEec
Q 005024 406 --GVGLTAAVQRDNV--TNEMVL-------EGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLN 474 (718)
Q Consensus 406 --~~~l~~~~~~~~~--~g~~~~-------~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~ 474 (718)
...... ...+.. .+.-.+ .... ..++..|++|||++.|+.+.+++|+..||+- |
T Consensus 85 ~~~~~~n~-~~ld~~~~~~vd~Ir~li~~~~~~P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-------------p 149 (614)
T PRK14971 85 NEQRSYNI-HELDAASNNSVDDIRNLIEQVRIPP-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-------------P 149 (614)
T ss_pred hcCCCCce-EEecccccCCHHHHHHHHHHHhhCc-ccCCcEEEEEECcccCCHHHHHHHHHHHhCC-------------C
Confidence 000000 001110 000000 0011 2345679999999999999999999999952 3
Q ss_pred CceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHH
Q 005024 475 ARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAIL 554 (718)
Q Consensus 475 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l 554 (718)
..+.+|.+++... .+.++|.||+..+ .+.+++.+.+
T Consensus 150 ~~tifIL~tt~~~-------------kIl~tI~SRc~iv-------------------------------~f~~ls~~ei 185 (614)
T PRK14971 150 SYAIFILATTEKH-------------KILPTILSRCQIF-------------------------------DFNRIQVADI 185 (614)
T ss_pred CCeEEEEEeCCch-------------hchHHHHhhhhee-------------------------------ecCCCCHHHH
Confidence 4455666665333 7889999999544 3567888888
Q ss_pred HHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 555 RAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 555 ~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
.+++..+.. ..-.+++++.+.|+.. ..++.|.+.+++....+.+ +.. |+.++|.+.+.
T Consensus 186 ~~~L~~ia~~egi~i~~~al~~La~~---------------s~gdlr~al~~Lekl~~y~---~~~-It~~~V~~~l~ 244 (614)
T PRK14971 186 VNHLQYVASKEGITAEPEALNVIAQK---------------ADGGMRDALSIFDQVVSFT---GGN-ITYKSVIENLN 244 (614)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhc---cCC-ccHHHHHHHhC
Confidence 888887544 3446889999998875 5789999999997665555 333 88888776653
No 147
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=6.7e-10 Score=126.71 Aligned_cols=207 Identities=19% Similarity=0.171 Sum_probs=129.5
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce------eecCCCCC----
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV------YTTGRGSS---- 405 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~------~~~~~~~~---- 405 (718)
.+++|++.++..|..++..+.. .. ++||+||||+|||++|+.+++.+.... ..||....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl---~~--------a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI---AP--------AYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC---Cc--------eEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHH
Confidence 4789999999999888877631 11 799999999999999999999874311 11221100
Q ss_pred CCcceeeE-eeccc--cccee----eec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCc
Q 005024 406 GVGLTAAV-QRDNV--TNEMV----LEG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNAR 476 (718)
Q Consensus 406 ~~~l~~~~-~~~~~--~g~~~----~~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~ 476 (718)
..|..... ..+.. .+.-. ++. ..-..+...|++|||+++|+.+.+++|+..||+- +..
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~~ 151 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PPR 151 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-------------CcC
Confidence 00000000 00110 01000 000 0011245679999999999999999999999952 234
Q ss_pred eEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 005024 477 TAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRA 556 (718)
Q Consensus 477 ~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~ 556 (718)
+.+|.++|... .+.++|.||+..+. +.+++.+.+.+
T Consensus 152 tvfIL~t~~~~-------------~llpTIrSRc~~~~-------------------------------f~~l~~~ei~~ 187 (620)
T PRK14948 152 VVFVLATTDPQ-------------RVLPTIISRCQRFD-------------------------------FRRIPLEAMVQ 187 (620)
T ss_pred eEEEEEeCChh-------------hhhHHHHhheeEEE-------------------------------ecCCCHHHHHH
Confidence 55665555332 57789999995442 34456666776
Q ss_pred HHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 557 YISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 557 ~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
++..... ....+++++...|..+ ..++.|.++++++..... ...|+.++|.+.+
T Consensus 188 ~L~~ia~kegi~is~~al~~La~~---------------s~G~lr~A~~lLeklsL~-----~~~It~e~V~~lv 242 (620)
T PRK14948 188 HLSEIAEKESIEIEPEALTLVAQR---------------SQGGLRDAESLLDQLSLL-----PGPITPEAVWDLL 242 (620)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHhc-----cCCCCHHHHHHHh
Confidence 6665433 3446888998888875 468889998888743222 2458877776543
No 148
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.21 E-value=5.7e-10 Score=118.47 Aligned_cols=144 Identities=17% Similarity=0.256 Sum_probs=92.7
Q ss_pred cCCeeeecccccCC------------hHHHHHHHHhhcccEEEEeeCCeEEEec-CceEEEEEeCCCCCCCCCCCCcchh
Q 005024 433 DMGICAIDEFDKMD------------ESDRTAIHEVMEQQTVSIAKAGITTSLN-ARTAVLSAANPAWGRYDLRRTPAEN 499 (718)
Q Consensus 433 ~~gil~iDEi~~~~------------~~~~~~L~~~me~~~i~i~k~g~~~~l~-~~~~viaa~Np~~g~~~~~~~~~~~ 499 (718)
..||+|||||||+. ...|..|+..||--++... .| +++ .++.|||+ |-|+..++
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k-~~---~i~T~~ILFI~~-----GAF~~~kp---- 315 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTK-YG---MVKTDHILFIAS-----GAFHVSKP---- 315 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeec-ce---eEECCceeEEec-----CCcCCCCh----
Confidence 88999999999984 2368889999997666652 22 222 24555553 55543222
Q ss_pred cCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHH
Q 005024 500 INLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR--LSPCVPRELEEYIA 577 (718)
Q Consensus 500 ~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~ls~~~~~~l~ 577 (718)
-+|-|.|.-||.+++.+ +..+.+.-.+| |.- -....+++|...-.. +.-.|+++|.+.|+
T Consensus 316 ~DlIPEl~GR~Pi~v~L-~~L~~~dL~~I----Lte-------------P~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA 377 (443)
T PRK05201 316 SDLIPELQGRFPIRVEL-DALTEEDFVRI----LTE-------------PKASLIKQYQALLATEGVTLEFTDDAIRRIA 377 (443)
T ss_pred hhccHHHhCccceEEEC-CCCCHHHHHHH----hcC-------------ChhHHHHHHHHHHhhcCcEEEEcHHHHHHHH
Confidence 25889999999887765 55554444333 210 113467777776554 34469999999999
Q ss_pred HHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHH
Q 005024 578 AAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALAR 614 (718)
Q Consensus 578 ~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~ 614 (718)
+....... ....+.+|.|.+++.-.-.-+.
T Consensus 378 ~~A~~~N~-------~~~~iGAR~LrtI~E~~L~d~~ 407 (443)
T PRK05201 378 EIAYQVNE-------KTENIGARRLHTVMEKLLEDIS 407 (443)
T ss_pred HHHHHhcc-------cccccchhhHHHHHHHHHHHHh
Confidence 87654322 1346779999999875544443
No 149
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.21 E-value=6.7e-11 Score=139.40 Aligned_cols=161 Identities=24% Similarity=0.294 Sum_probs=95.1
Q ss_pred cccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
+|.|++.+|..|...+..... .....+..++..-.+||+||||||||++|++++..+...++..... .+......
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~----~l~~~~vG 529 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP----EILSKWVG 529 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH----HHhhcccC
Confidence 578999999888766543211 0011111122333699999999999999999999986554432110 11000000
Q ss_pred cccccceeeecceEe---eecCCeeeecccccCChH------------HHHHHHHhhcccEEEEeeCCeEEEecCceEEE
Q 005024 416 DNVTNEMVLEGGALV---LADMGICAIDEFDKMDES------------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVL 480 (718)
Q Consensus 416 ~~~~g~~~~~~g~l~---~a~~gil~iDEi~~~~~~------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~vi 480 (718)
. + +..+. -.+. .....|+||||+|.+.+. ..+.|+..|+ |.. -..++.||
T Consensus 530 e--s-e~~i~-~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ld---------g~~--~~~~v~vI 594 (733)
T TIGR01243 530 E--S-EKAIR-EIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMD---------GIQ--ELSNVVVI 594 (733)
T ss_pred c--H-HHHHH-HHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhh---------ccc--CCCCEEEE
Confidence 0 0 00000 0000 123579999999987321 2244555554 211 13468999
Q ss_pred EEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHh
Q 005024 481 SAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMAR 530 (718)
Q Consensus 481 aa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~ 530 (718)
||||... .+++++++ |||..+.+ +.|+.+...+|.+
T Consensus 595 ~aTn~~~-------------~ld~allRpgRfd~~i~v-~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 595 AATNRPD-------------ILDPALLRPGRFDRLILV-PPPDEEARKEIFK 632 (733)
T ss_pred EeCCChh-------------hCCHhhcCCCccceEEEe-CCcCHHHHHHHHH
Confidence 9999887 79999996 99987654 7888777666643
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.21 E-value=9.1e-11 Score=137.86 Aligned_cols=204 Identities=15% Similarity=0.197 Sum_probs=119.6
Q ss_pred HHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC----------cee
Q 005024 329 KLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR----------GVY 398 (718)
Q Consensus 329 ~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~----------~~~ 398 (718)
.....-...++|++.....++..|..+... |++|+||||||||++++.+++.+.. .++
T Consensus 175 ~~r~~~l~~~igr~~ei~~~~~~L~~~~~~------------n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~ 242 (731)
T TIGR02639 175 KAKNGKIDPLIGREDELERTIQVLCRRKKN------------NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIY 242 (731)
T ss_pred HHhcCCCCcccCcHHHHHHHHHHHhcCCCC------------ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEE
Confidence 333333346889999877777666554322 8999999999999999999987621 111
Q ss_pred ecCCCCCCCcceeeEeecccccceeeecc-eE---eeecCCeeeecccccCC---------hHHHHHHHHhhcccEEEEe
Q 005024 399 TTGRGSSGVGLTAAVQRDNVTNEMVLEGG-AL---VLADMGICAIDEFDKMD---------ESDRTAIHEVMEQQTVSIA 465 (718)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~g-~l---~~a~~gil~iDEi~~~~---------~~~~~~L~~~me~~~i~i~ 465 (718)
..... .+.+. ..+.|+|.-.-. .+ ....+.|+||||++.+. .+.++.|...|+.|
T Consensus 243 ~~~~~----~l~a~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g----- 310 (731)
T TIGR02639 243 SLDMG----SLLAG---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG----- 310 (731)
T ss_pred EecHH----HHhhh---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-----
Confidence 11100 01100 011122211000 00 01235699999999874 23456677777654
Q ss_pred eCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCC
Q 005024 466 KAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALG 545 (718)
Q Consensus 466 k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~ 545 (718)
.+.+|+|||+.+ | ...+..+++|.+||..+. ...|+.++-..|.+.+...+....
T Consensus 311 ----------~i~~IgaTt~~e--~------~~~~~~d~al~rRf~~i~--v~~p~~~~~~~il~~~~~~~e~~~----- 365 (731)
T TIGR02639 311 ----------KLRCIGSTTYEE--Y------KNHFEKDRALSRRFQKID--VGEPSIEETVKILKGLKEKYEEFH----- 365 (731)
T ss_pred ----------CeEEEEecCHHH--H------HHHhhhhHHHHHhCceEE--eCCCCHHHHHHHHHHHHHHHHhcc-----
Confidence 356789999752 1 111268999999998543 377787777777766554432111
Q ss_pred CCCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHH
Q 005024 546 FTPLEPAILRAYISAARRLSP--CVPRELEEYIAAAYS 581 (718)
Q Consensus 546 ~~~~~~~~l~~~i~~~~~~~p--~ls~~~~~~l~~~y~ 581 (718)
-..++.+.+...+..+.++.+ .+++.|++.+.+...
T Consensus 366 ~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 366 HVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred CcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence 123666677766666666433 367777777665544
No 151
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.20 E-value=8.1e-12 Score=119.43 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=72.8
Q ss_pred ceeeecCCCcchHHHHHHHHHHHCCC----ceeecCCCCCCCccee-eEeecccccceeeecceEeeecCCeeeeccccc
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVAPR----GVYTTGRGSSGVGLTA-AVQRDNVTNEMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~~~----~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
.++||+||+|+|||.+|+++++.+.- ........ .++. .......+......+|....+.+||+|||||||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s----~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMS----EYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGG----GHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhh----cccccchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 38999999999999999999999751 21111000 0000 000000000011122344445678999999999
Q ss_pred CCh-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 445 MDE-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 445 ~~~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
+.+ ..|..|+++||.++++.. .|....+ .++.+|+|+|-.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-~g~~vd~-~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-YGRTVDT-SNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-TCCEEEG-TTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecc-cceEEEe-CCceEEEecccc
Confidence 999 999999999999999864 3433333 489999999976
No 152
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.19 E-value=1.8e-10 Score=123.70 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=96.0
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc-------eeecCCCCCCCc
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG-------VYTTGRGSSGVG 408 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~-------~~~~~~~~~~~~ 408 (718)
.++++.+.....++.+|..+. |++|+|+||||||++|+.++..+... ..+.....+..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--------------~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeD 240 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--------------NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYED 240 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--------------CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHH
Confidence 356666777777777776654 89999999999999999999876321 011111111101
Q ss_pred ceeeEeecccccceeeecceEe----ee-----cCCeeeecccccCChHH-HHHHHHhhccc------EEEEe--e-CCe
Q 005024 409 LTAAVQRDNVTNEMVLEGGALV----LA-----DMGICAIDEFDKMDESD-RTAIHEVMEQQ------TVSIA--K-AGI 469 (718)
Q Consensus 409 l~~~~~~~~~~g~~~~~~g~l~----~a-----~~gil~iDEi~~~~~~~-~~~L~~~me~~------~i~i~--k-~g~ 469 (718)
+.... .+....+...+|.+. .| .+.+++|||+|+.+.+. ...+..+||.+ .+.+. . .+.
T Consensus 241 FI~G~--rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e 318 (459)
T PRK11331 241 FIQGY--RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEE 318 (459)
T ss_pred Hhccc--CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccc
Confidence 11000 011123444455321 11 34699999999998654 67788888853 12221 1 234
Q ss_pred EEEecCceEEEEEeCCCC-CCCCCCCCcchhcCCChhhhcccceEEE
Q 005024 470 TTSLNARTAVLSAANPAW-GRYDLRRTPAENINLPPALLSRFDLLWL 515 (718)
Q Consensus 470 ~~~l~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~~ll~Rfdli~~ 515 (718)
...+|.++.||||+|... +.. .++.||++||..+-+
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs~~----------~lD~AlrRRF~fi~i 355 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRSLA----------VVDYALRRRFSFIDI 355 (459)
T ss_pred cccCCCCeEEEEecCccccchh----------hccHHHHhhhheEEe
Confidence 567899999999999874 222 599999999976644
No 153
>PRK04195 replication factor C large subunit; Provisional
Probab=99.18 E-value=1.1e-09 Score=122.95 Aligned_cols=203 Identities=22% Similarity=0.215 Sum_probs=121.9
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
.+++|++.++..+...+......... -++||+||||||||++|+++++.+...+........ . ......
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~--------~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~--r-~~~~i~ 82 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPK--------KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ--R-TADVIE 82 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCC--------CeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc--c-cHHHHH
Confidence 36889999888777655432110011 189999999999999999999998644332111000 0 000000
Q ss_pred cccccceeeecceEeeecCCeeeecccccCCh----HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCC
Q 005024 416 DNVTNEMVLEGGALVLADMGICAIDEFDKMDE----SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYD 491 (718)
Q Consensus 416 ~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~----~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~ 491 (718)
.. -+. ......+.-....+++|||+|.+.. ....+|++.++. .++.+|.++|...
T Consensus 83 ~~-i~~-~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---------------~~~~iIli~n~~~---- 141 (482)
T PRK04195 83 RV-AGE-AATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---------------AKQPIILTANDPY---- 141 (482)
T ss_pred HH-HHH-hhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---------------CCCCEEEeccCcc----
Confidence 00 000 0000111112467999999999976 446778787763 2345677788654
Q ss_pred CCCCcchhcCCCh-hhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCC
Q 005024 492 LRRTPAENINLPP-ALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVP 569 (718)
Q Consensus 492 ~~~~~~~~~~l~~-~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls 569 (718)
.++. +|.+|+..+. +.+++...+..++..... ....++
T Consensus 142 ---------~~~~k~Lrsr~~~I~-------------------------------f~~~~~~~i~~~L~~i~~~egi~i~ 181 (482)
T PRK04195 142 ---------DPSLRELRNACLMIE-------------------------------FKRLSTRSIVPVLKRICRKEGIECD 181 (482)
T ss_pred ---------ccchhhHhccceEEE-------------------------------ecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 3444 6777874432 344555566666655433 344689
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 570 RELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 570 ~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
+++.+.|++. ..++.|.+.+.+.. .+ .+...++.+++..+.
T Consensus 182 ~eaL~~Ia~~---------------s~GDlR~ain~Lq~---~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 182 DEALKEIAER---------------SGGDLRSAINDLQA---IA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHHH---------------cCCCHHHHHHHHHH---Hh--cCCCCCcHHHHHHhh
Confidence 9999999874 46889988877654 33 245678888887654
No 154
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.18 E-value=1.2e-10 Score=140.38 Aligned_cols=200 Identities=14% Similarity=0.151 Sum_probs=115.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec-CCCCCCC---cce------e---------eEeeccccc--c--------
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT-GRGSSGV---GLT------A---------AVQRDNVTN--E-------- 421 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~-~~~~~~~---~l~------~---------~~~~~~~~g--~-------- 421 (718)
.|||+||||||||.||+++|..+.-+++.. +...-.. |.. + ...++..+. +
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~ 1711 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMD 1711 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhh
Confidence 699999999999999999999997665542 1110000 000 0 000000000 0
Q ss_pred eeeecce------Eeee---cCCeeeecccccCChHH-----HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCC
Q 005024 422 MVLEGGA------LVLA---DMGICAIDEFDKMDESD-----RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAW 487 (718)
Q Consensus 422 ~~~~~g~------l~~a---~~gil~iDEi~~~~~~~-----~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~ 487 (718)
.....++ +.+| ...|++|||||.+...+ ...|+..|.... ...-..++.||||||.+.
T Consensus 1712 m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--------~~~s~~~VIVIAATNRPD 1783 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--------ERCSTRNILVIASTHIPQ 1783 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc--------ccCCCCCEEEEEeCCCcc
Confidence 0000011 2233 35799999999997543 244555554210 001124688999999987
Q ss_pred CCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 005024 488 GRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLS 565 (718)
Q Consensus 488 g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 565 (718)
.|++||++ |||-.+.+ +.|+.....++...+ ...+.+
T Consensus 1784 -------------~LDPALLRPGRFDR~I~I-r~Pd~p~R~kiL~IL--------------------------l~tkg~- 1822 (2281)
T CHL00206 1784 -------------KVDPALIAPNKLNTCIKI-RRLLIPQQRKHFFTL--------------------------SYTRGF- 1822 (2281)
T ss_pred -------------cCCHhHcCCCCCCeEEEe-CCCCchhHHHHHHHH--------------------------HhhcCC-
Confidence 89999998 99988755 455543333322111 111111
Q ss_pred CCCCHH--HHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Q 005024 566 PCVPRE--LEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQ 634 (718)
Q Consensus 566 p~ls~~--~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~ 634 (718)
.+.++ -.+.++.. ..+.+.+.|.+++.-|..+|..+....|+.+|++.|+.-..
T Consensus 1823 -~L~~~~vdl~~LA~~--------------T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1823 -HLEKKMFHTNGFGSI--------------TMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred -CCCcccccHHHHHHh--------------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 01111 01122221 35677888999998888888888888899999988886543
No 155
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.18 E-value=3.8e-10 Score=119.77 Aligned_cols=145 Identities=21% Similarity=0.292 Sum_probs=92.7
Q ss_pred ecCCeeeecccccCCh------------HHHHHHHHhhcccEEEEeeCCeEEEec-CceEEEEEeCCCCCCCCCCCCcch
Q 005024 432 ADMGICAIDEFDKMDE------------SDRTAIHEVMEQQTVSIAKAGITTSLN-ARTAVLSAANPAWGRYDLRRTPAE 498 (718)
Q Consensus 432 a~~gil~iDEi~~~~~------------~~~~~L~~~me~~~i~i~k~g~~~~l~-~~~~viaa~Np~~g~~~~~~~~~~ 498 (718)
+..||+|||||||+.. .+|..|+..||-.++.. |.| .++ .++.+||+ |-|...++
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~---~v~T~~ILFI~~-----GAF~~~kp--- 313 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYG---MVKTDHILFIAA-----GAFQLAKP--- 313 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cce---eEECCceeEEec-----CCcCCCCh---
Confidence 5789999999999842 26788999999766665 333 222 24555554 44543221
Q ss_pred hcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHH
Q 005024 499 NINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR--LSPCVPRELEEYI 576 (718)
Q Consensus 499 ~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~ls~~~~~~l 576 (718)
-+|-|.|.-||.+++.+ +..+.+.-.+| |.- | ....+++|...-.. +.-.|+++|.+.|
T Consensus 314 -~DlIPEl~GR~Pi~v~L-~~L~~edL~rI----Lte------------P-~nsLikQy~~Lf~~egv~L~Ftd~Al~~I 374 (441)
T TIGR00390 314 -SDLIPELQGRFPIRVEL-QALTTDDFERI----LTE------------P-KNSLIKQYKALMKTEGVNIEFSDEAIKRI 374 (441)
T ss_pred -hhccHHHhCccceEEEC-CCCCHHHHHHH----hcC------------C-hhHHHHHHHHHHhhcCcEEEEeHHHHHHH
Confidence 25889999999887765 44554443333 211 1 12467777776654 3446999999999
Q ss_pred HHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHH
Q 005024 577 AAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALAR 614 (718)
Q Consensus 577 ~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~ 614 (718)
++....+.. ....+.+|.|.+++...-.-+.
T Consensus 375 A~~A~~~N~-------~~~~iGAR~LrtilE~~l~d~~ 405 (441)
T TIGR00390 375 AELAYNVNE-------KTENIGARRLHTVLERLLEDIS 405 (441)
T ss_pred HHHHHHhcc-------cccccchhhHHHHHHHHHHHHH
Confidence 987654322 1346779999999875544443
No 156
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=8.1e-11 Score=114.14 Aligned_cols=197 Identities=22% Similarity=0.205 Sum_probs=110.8
Q ss_pred ccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeee---cCCeeeeccc
Q 005024 366 IRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLA---DMGICAIDEF 442 (718)
Q Consensus 366 ~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a---~~gil~iDEi 442 (718)
++.+-.+|++||||||||.+||+++......+.. -.++ .|..-... .|. .+...++.+| ...|+||||+
T Consensus 202 i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK-LAgP---QLVQMfIG---dGA-kLVRDAFaLAKEkaP~IIFIDEl 273 (424)
T KOG0652|consen 202 IRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK-LAGP---QLVQMFIG---DGA-KLVRDAFALAKEKAPTIIFIDEL 273 (424)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH-hcch---HHHhhhhc---chH-HHHHHHHHHhhccCCeEEEEech
Confidence 3444479999999999999999999875322111 0010 01000000 111 1122233333 2469999999
Q ss_pred ccCC-----------hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--c
Q 005024 443 DKMD-----------ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--R 509 (718)
Q Consensus 443 ~~~~-----------~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--R 509 (718)
|.+. .+.|..+++.+.|-. |. +-+.++-||||+|... -++++|++ |
T Consensus 274 DAIGtKRfDSek~GDREVQRTMLELLNQLD------GF--ss~~~vKviAATNRvD-------------iLDPALlRSGR 332 (424)
T KOG0652|consen 274 DAIGTKRFDSEKAGDREVQRTMLELLNQLD------GF--SSDDRVKVIAATNRVD-------------ILDPALLRSGR 332 (424)
T ss_pred hhhccccccccccccHHHHHHHHHHHHhhc------CC--CCccceEEEeeccccc-------------ccCHHHhhccc
Confidence 9763 346777888887521 22 2356889999999886 68888887 6
Q ss_pred cceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHhhHhhh
Q 005024 510 FDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPREL-EEYIAAAYSNIRQEEA 588 (718)
Q Consensus 510 fdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~-~~~l~~~y~~lr~~~~ 588 (718)
.|--+ ..|.+ .+.-+..+.......-.+++++ .+.|.+.
T Consensus 333 LDRKI---EfP~P----------------------------ne~aRarIlQIHsRKMnv~~DvNfeELaRs--------- 372 (424)
T KOG0652|consen 333 LDRKI---EFPHP----------------------------NEEARARILQIHSRKMNVSDDVNFEELARS--------- 372 (424)
T ss_pred ccccc---cCCCC----------------------------ChHHHHHHHHHhhhhcCCCCCCCHHHHhhc---------
Confidence 65443 22222 2223333332222111222221 1122211
Q ss_pred hcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 589 KSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 589 ~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
.-..+.-+...+.--|.-+|-.++...|+-+|..+++..++..
T Consensus 373 -----TddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 373 -----TDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred -----ccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHh
Confidence 2234455666666667777777788889999999998776654
No 157
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.8e-10 Score=130.17 Aligned_cols=224 Identities=22% Similarity=0.231 Sum_probs=128.8
Q ss_pred cccccHHHHHHHHHHHhCCccc-cCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCC-C--CCcceee
Q 005024 337 EIYGHEDIKKALLLLLVGAPHR-KLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS-S--GVGLTAA 412 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~~-~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~-~--~~~l~~~ 412 (718)
++.|.+.+|..+...+...... ....+...+..-.+||+||||||||++|++++..+...++...... . ..|-+..
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHH
Confidence 5666777766655443222100 0000011233337999999999999999999998766554421110 0 0111111
Q ss_pred EeecccccceeeecceEeeecCCeeeecccccCCh-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEE
Q 005024 413 VQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLS 481 (718)
Q Consensus 413 ~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~via 481 (718)
.++..+.... .....|+||||+|.+-+ ...+.|+..|+. ... ..++.|||
T Consensus 323 ~ir~~F~~A~--------~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~---------~e~--~~~v~vi~ 383 (494)
T COG0464 323 NIRELFEKAR--------KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDG---------IEK--AEGVLVIA 383 (494)
T ss_pred HHHHHHHHHH--------cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcC---------CCc--cCceEEEe
Confidence 1111111000 12367999999998732 233445555531 111 12477999
Q ss_pred EeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 005024 482 AANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYIS 559 (718)
Q Consensus 482 a~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~ 559 (718)
|||.+. .+++++++ |||-.+.+ +.|+.....+|.++.+.... .++
T Consensus 384 aTN~p~-------------~ld~a~lR~gRfd~~i~v-~~pd~~~r~~i~~~~~~~~~---------~~~---------- 430 (494)
T COG0464 384 ATNRPD-------------DLDPALLRPGRFDRLIYV-PLPDLEERLEIFKIHLRDKK---------PPL---------- 430 (494)
T ss_pred cCCCcc-------------ccCHhhcccCccceEeec-CCCCHHHHHHHHHHHhcccC---------Ccc----------
Confidence 999987 79999999 99988765 77887777766554432110 000
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcC-CCCccHHHHHHHHHHHh
Q 005024 560 AARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRF-SETVAQSDVDEALRLMQ 634 (718)
Q Consensus 560 ~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~-~~~V~~~dv~~ai~l~~ 634 (718)
..+...+.+.+. ....+...+..+++-|...|..+. ...|+.+|+.+|+.-..
T Consensus 431 --------~~~~~~~~l~~~--------------t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~ 484 (494)
T COG0464 431 --------AEDVDLEELAEI--------------TEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIK 484 (494)
T ss_pred --------hhhhhHHHHHHH--------------hcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcC
Confidence 111111222220 123566788888888877776666 67899999999998643
No 158
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.15 E-value=3.7e-10 Score=116.35 Aligned_cols=207 Identities=15% Similarity=0.188 Sum_probs=117.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecC---CeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADM---GICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~---gil~iDEi~~~~~ 447 (718)
|+||+||+|||||.+++.+-+.++...|........+.-++..+............|....+.+ -|+|||+++.-.+
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~ 114 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQP 114 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S--
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCC
Confidence 8999999999999999887766654432211000000011111111111111122232222222 3999999996543
Q ss_pred H------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCC
Q 005024 448 S------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRAD 521 (718)
Q Consensus 448 ~------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~ 521 (718)
+ ....|.+.|++|.+...+......+ .++.++||+||..|+. .+++.|++.|-++.+ +.|+
T Consensus 115 d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i-~~i~~vaa~~p~~Gr~----------~is~R~~r~f~i~~~--~~p~ 181 (272)
T PF12775_consen 115 DKYGTQPPIELLRQLIDYGGFYDRKKLEWKSI-EDIQFVAAMNPTGGRN----------PISPRFLRHFNILNI--PYPS 181 (272)
T ss_dssp -TTS--HHHHHHHHHHHCSEEECTTTTEEEEE-CSEEEEEEESSTTT------------SHHHHHHTTEEEEE------T
T ss_pred CCCCCcCHHHHHHHHHHhcCcccCCCcEEEEE-eeeEEEEecCCCCCCC----------CCChHHhhheEEEEe--cCCC
Confidence 3 2467888888887765433333333 4799999999988887 899999999976654 6777
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhc-CCCCcccCHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKS-NTPHSYTTVR 600 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~-~~~~~~~s~R 600 (718)
.+.-..|-..++..+..... +... ...+.+.+.+...+.|..++..-.-. ...+.-.|+|
T Consensus 182 ~~sl~~If~~il~~~l~~~~------------------f~~~-v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlR 242 (272)
T PF12775_consen 182 DESLNTIFSSILQSHLKNGG------------------FPED-VQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLR 242 (272)
T ss_dssp CCHHHHHHHHHHHHHTCHTT------------------SSGG-GCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHH
T ss_pred hHHHHHHHHHHHhhhcccCC------------------CChH-HHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHH
Confidence 77777765555544321000 0001 11345566677788888888753222 2346778999
Q ss_pred HHHHHHHHH
Q 005024 601 TLLSILRIS 609 (718)
Q Consensus 601 ~l~~lirla 609 (718)
.+-++++-.
T Consensus 243 Dlsrv~qGi 251 (272)
T PF12775_consen 243 DLSRVFQGI 251 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888743
No 159
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.15 E-value=8.3e-10 Score=117.54 Aligned_cols=204 Identities=15% Similarity=0.174 Sum_probs=121.1
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeee-cCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceeeE
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICL-MGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAAV 413 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl-~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~~ 413 (718)
.+++|++.++..+...+..|..+ |++| +||||+|||++++++++.....+.. .... . . ...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~------------~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~--~--~~~ 83 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIP------------NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C--R--IDF 83 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCC------------eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c--c--HHH
Confidence 37789999988887777655422 4555 8999999999999999876433221 1110 0 0 000
Q ss_pred eecccccceeeecceEeeecCCeeeecccccC-ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCC
Q 005024 414 QRDNVTNEMVLEGGALVLADMGICAIDEFDKM-DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDL 492 (718)
Q Consensus 414 ~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~-~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~ 492 (718)
.++.. ..+. .... ..+..++++|||++.+ ..+.+..|...|++. +.++.+|.++|...
T Consensus 84 i~~~l-~~~~-~~~~-~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~----- 142 (316)
T PHA02544 84 VRNRL-TRFA-STVS-LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-------------SKNCSFIITANNKN----- 142 (316)
T ss_pred HHHHH-HHHH-Hhhc-ccCCCeEEEEECcccccCHHHHHHHHHHHHhc-------------CCCceEEEEcCChh-----
Confidence 00100 0000 0000 1135689999999999 666778888888742 34678888998654
Q ss_pred CCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHH
Q 005024 493 RRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPREL 572 (718)
Q Consensus 493 ~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~ 572 (718)
.+.+++.+||..+.+ +.|+......+...+ +.+....+......+++++
T Consensus 143 --------~l~~~l~sR~~~i~~--~~p~~~~~~~il~~~---------------------~~~~~~~~~~~~~~i~~~a 191 (316)
T PHA02544 143 --------GIIEPLRSRCRVIDF--GVPTKEEQIEMMKQM---------------------IVRCKGILEAEGVEVDMKV 191 (316)
T ss_pred --------hchHHHHhhceEEEe--CCCCHHHHHHHHHHH---------------------HHHHHHHHHhcCCCCCHHH
Confidence 688999999965432 455544443333221 1222222222334678888
Q ss_pred HHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 005024 573 EEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEA 629 (718)
Q Consensus 573 ~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~a 629 (718)
...+.+. ..++.|.+.+.+.. .+ ....++.+|+...
T Consensus 192 l~~l~~~---------------~~~d~r~~l~~l~~---~~---~~~~i~~~~l~~~ 227 (316)
T PHA02544 192 LAALVKK---------------NFPDFRRTINELQR---YA---STGKIDAGILSEV 227 (316)
T ss_pred HHHHHHh---------------cCCCHHHHHHHHHH---HH---ccCCCCHHHHHHh
Confidence 8888774 23567777665652 22 2356777776553
No 160
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.3e-11 Score=128.70 Aligned_cols=167 Identities=19% Similarity=0.264 Sum_probs=106.2
Q ss_pred cccccHHHHHHHHHHHhCCcccc-CCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAPHRK-LKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~~~-~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
+|-|++.++..+.+++.....+. .....-++....|||+||||||||.||+++|+.+...+... +++ +|...
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV-KGP---ELlNk--- 584 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV-KGP---ELLNK--- 584 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEee-cCH---HHHHH---
Confidence 68889999999988887764321 11112233445799999999999999999999975543321 111 11110
Q ss_pred cccccceee-ecceEeee---cCCeeeecccccCChH-----------HHHHHHHhhcccEEEEeeCCeEEEecCceEEE
Q 005024 416 DNVTNEMVL-EGGALVLA---DMGICAIDEFDKMDES-----------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVL 480 (718)
Q Consensus 416 ~~~~g~~~~-~~g~l~~a---~~gil~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~vi 480 (718)
+-|+-.. ..-.+..| ...|+|+||+|.|-+. ..+.|+.-|+ |... ...+.||
T Consensus 585 --YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElD---------Gl~~--R~gV~vi 651 (802)
T KOG0733|consen 585 --YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELD---------GLEE--RRGVYVI 651 (802)
T ss_pred --HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhc---------cccc--ccceEEE
Confidence 1111000 00001111 2469999999988432 3455666665 3221 1357899
Q ss_pred EEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhcc
Q 005024 481 SAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQ 537 (718)
Q Consensus 481 aa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~ 537 (718)
||||.+. -+++|+|+ |||-+..+ +.|+.++...|.+.+...+.
T Consensus 652 aATNRPD-------------iIDpAiLRPGRlDk~LyV-~lPn~~eR~~ILK~~tkn~k 696 (802)
T KOG0733|consen 652 AATNRPD-------------IIDPAILRPGRLDKLLYV-GLPNAEERVAILKTITKNTK 696 (802)
T ss_pred eecCCCc-------------ccchhhcCCCccCceeee-cCCCHHHHHHHHHHHhccCC
Confidence 9999886 79999998 99976544 89999988888777766543
No 161
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.4e-10 Score=125.38 Aligned_cols=126 Identities=28% Similarity=0.334 Sum_probs=84.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee-cCCCC--CCCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGS--SGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
.+||+||||||||.|||+++..+...++. +|... -.+|..++-+|+.+..... . ...|+||||+|....
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk-------~-aP~IIFIDEiDAvGr 256 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK-------N-APCIIFIDEIDAVGR 256 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhc-------c-CCCeEEEehhhhccc
Confidence 69999999999999999999999877666 33322 1234445555554321110 1 136999999998743
Q ss_pred H--------------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccc
Q 005024 448 S--------------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFD 511 (718)
Q Consensus 448 ~--------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfd 511 (718)
. ..+.|+--|+ |.. -+..+.++||||.+. -+++||++ |||
T Consensus 257 ~Rg~g~GggnderEQTLNQlLvEmD---------GF~--~~~gviviaaTNRpd-------------VlD~ALlRpgRFD 312 (596)
T COG0465 257 QRGAGLGGGNDEREQTLNQLLVEMD---------GFG--GNEGVIVIAATNRPD-------------VLDPALLRPGRFD 312 (596)
T ss_pred ccCCCCCCCchHHHHHHHHHHhhhc---------cCC--CCCceEEEecCCCcc-------------cchHhhcCCCCcc
Confidence 2 2233444443 322 245688999999886 68899998 998
Q ss_pred eEEEeccCCChhHHHHHH
Q 005024 512 LLWLILDRADMDSDLEMA 529 (718)
Q Consensus 512 li~~~~d~~~~~~d~~i~ 529 (718)
-.+++ +.||....++|.
T Consensus 313 RqI~V-~~PDi~gRe~Il 329 (596)
T COG0465 313 RQILV-ELPDIKGREQIL 329 (596)
T ss_pred eeeec-CCcchhhHHHHH
Confidence 77654 888766555543
No 162
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.12 E-value=7.1e-10 Score=112.33 Aligned_cols=175 Identities=22% Similarity=0.251 Sum_probs=104.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC----ceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR----GVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
+++|+||||+|||+|+++++..+.. ..|...... .....+ ..+ + ...-.++||||++.+.
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~-----------~~~~~~-~~~-~---~~~~dlliiDdi~~~~ 110 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR-----------AWFVPE-VLE-G---MEQLSLVCIDNIECIA 110 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH-----------hhhhHH-HHH-H---hhhCCEEEEeChhhhc
Confidence 7999999999999999998876531 112110000 000000 000 0 0112589999999986
Q ss_pred h--HHHHHHH----HhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc--eEEEecc
Q 005024 447 E--SDRTAIH----EVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD--LLWLILD 518 (718)
Q Consensus 447 ~--~~~~~L~----~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd--li~~~~d 518 (718)
. ..+..|. ..++.+ ++.+|.|++.....++ .+.+.|.||+. +++.
T Consensus 111 ~~~~~~~~lf~l~n~~~e~g---------------~~~li~ts~~~p~~l~---------~~~~~L~SRl~~g~~~~--- 163 (235)
T PRK08084 111 GDELWEMAIFDLYNRILESG---------------RTRLLITGDRPPRQLN---------LGLPDLASRLDWGQIYK--- 163 (235)
T ss_pred CCHHHHHHHHHHHHHHHHcC---------------CCeEEEeCCCChHHcC---------cccHHHHHHHhCCceee---
Confidence 4 3344443 444432 2234555553322220 36799999995 4443
Q ss_pred CCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCccc
Q 005024 519 RADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA-ARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYT 597 (718)
Q Consensus 519 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~ 597 (718)
+.+.+.+.+.+.+.. +....-.+++++.++|... .++
T Consensus 164 ---------------------------l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~---------------~~~ 201 (235)
T PRK08084 164 ---------------------------LQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKR---------------LDR 201 (235)
T ss_pred ---------------------------ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---------------hcC
Confidence 234445555555544 3333347999999999985 588
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 598 TVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 598 s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+.|.+++++.... .+.+.....||.+.+++++.
T Consensus 202 d~r~l~~~l~~l~-~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 202 EMRTLFMTLDQLD-RASITAQRKLTIPFVKEILK 234 (235)
T ss_pred CHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHc
Confidence 9999999998754 33343445699999988864
No 163
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.09 E-value=1.2e-09 Score=127.05 Aligned_cols=195 Identities=20% Similarity=0.238 Sum_probs=133.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCC--CCCCCcceeeEeecccccceeeecceEeee--cCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGR--GSSGVGLTAAVQRDNVTNEMVLEGGALVLA--DMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a--~~gil~iDEi~~~~ 446 (718)
++||.|.||+|||++..++|+..+........ .+.-.+|.++......+|++.+....+..| +||-+++||++-++
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLaS 1624 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLAS 1624 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhhH
Confidence 79999999999999999999998765443211 112224444444434568877766555544 89999999999999
Q ss_pred hHHHHHHHHhhcc-cEEEEeeCCeEEEecCceEEEEEeCCC---CCCCCCCCCcchhcCCChhhhcccceEEEeccCCCh
Q 005024 447 ESDRTAIHEVMEQ-QTVSIAKAGITTSLNARTAVLSAANPA---WGRYDLRRTPAENINLPPALLSRFDLLWLILDRADM 522 (718)
Q Consensus 447 ~~~~~~L~~~me~-~~i~i~k~g~~~~l~~~~~viaa~Np~---~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~ 522 (718)
.+....|...+++ +...|+.-..+...+++++|.||-||. .||- .+|..+++||..+++ |-.
T Consensus 1625 QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRK----------gLPkSF~nRFsvV~~--d~l-- 1690 (4600)
T COG5271 1625 QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRK----------GLPKSFLNRFSVVKM--DGL-- 1690 (4600)
T ss_pred HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcc----------cCCHHHhhhhheEEe--ccc--
Confidence 9999999999987 556777667788889999999999999 4555 799999999988875 222
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhh----h-cCCCCccc
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEA----K-SNTPHSYT 597 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~----~-~~~~~~~~ 597 (718)
+.+.+ +..+....|.+.++..-.++.+...+...-. - +...+|..
T Consensus 1691 ---------------------------t~dDi---~~Ia~~~yp~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwef 1740 (4600)
T COG5271 1691 ---------------------------TTDDI---THIANKMYPQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEF 1740 (4600)
T ss_pred ---------------------------ccchH---HHHHHhhCCccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEE
Confidence 22222 2224445566666666555555544433210 0 12347888
Q ss_pred CHHHHHHHHHHH
Q 005024 598 TVRTLLSILRIS 609 (718)
Q Consensus 598 s~R~l~~lirla 609 (718)
+.|.-..++.+.
T Consensus 1741 nlrdTLRwl~ll 1752 (4600)
T COG5271 1741 NLRDTLRWLILL 1752 (4600)
T ss_pred ehHHHHHHHHHh
Confidence 888655555443
No 164
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.07 E-value=9e-10 Score=127.86 Aligned_cols=207 Identities=13% Similarity=0.132 Sum_probs=120.3
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce---eecCCCCCCCcceee
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV---YTTGRGSSGVGLTAA 412 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~---~~~~~~~~~~~l~~~ 412 (718)
..++|.+.....++..|...... |+||+||||||||.+++.++...-... ...+...-...+..-
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~------------n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKN------------NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCC------------CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHH
Confidence 34788888766666666553222 899999999999999999997641110 000000000000000
Q ss_pred Eeecccccceeeec----ceEeeecCCeeeecccccCC---------hHHHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 413 VQRDNVTNEMVLEG----GALVLADMGICAIDEFDKMD---------ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 413 ~~~~~~~g~~~~~~----g~l~~a~~gil~iDEi~~~~---------~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
.....+.|+|...- ..+....++|+|||||+.+- .+..+.|..+++.+ +..+
T Consensus 254 laG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g---------------~i~v 318 (758)
T PRK11034 254 LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------------KIRV 318 (758)
T ss_pred hcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC---------------CeEE
Confidence 00011122221110 01112356899999999761 12223355555543 4568
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYIS 559 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~ 559 (718)
|+|+|+.+- ..-+..+++|.+||+.+. .+.|+.+.-..|.+.+...+.... -..++.+.++..+.
T Consensus 319 IgATt~~E~--------~~~~~~D~AL~rRFq~I~--v~ePs~~~~~~IL~~~~~~ye~~h-----~v~i~~~al~~a~~ 383 (758)
T PRK11034 319 IGSTTYQEF--------SNIFEKDRALARRFQKID--ITEPSIEETVQIINGLKPKYEAHH-----DVRYTAKAVRAAVE 383 (758)
T ss_pred EecCChHHH--------HHHhhccHHHHhhCcEEE--eCCCCHHHHHHHHHHHHHHhhhcc-----CCCcCHHHHHHHHH
Confidence 899998631 011278999999998544 488888888888776654432211 12367777777777
Q ss_pred HHHhcCC--CCCHHHHHHHHHHHHHhh
Q 005024 560 AARRLSP--CVPRELEEYIAAAYSNIR 584 (718)
Q Consensus 560 ~~~~~~p--~ls~~~~~~l~~~y~~lr 584 (718)
.+.++.+ .+++.+.+.+.+.....|
T Consensus 384 ls~ryi~~r~lPdKaidlldea~a~~~ 410 (758)
T PRK11034 384 LAVKYINDRHLPDKAIDVIDEAGARAR 410 (758)
T ss_pred HhhccccCccChHHHHHHHHHHHHhhc
Confidence 6666433 488888888887765544
No 165
>PRK04132 replication factor C small subunit; Provisional
Probab=99.07 E-value=6.3e-10 Score=129.07 Aligned_cols=255 Identities=15% Similarity=0.094 Sum_probs=154.2
Q ss_pred eeeecC--CCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE------eecccccceeeecceEeeecCCeeeeccc
Q 005024 371 HICLMG--DPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV------QRDNVTNEMVLEGGALVLADMGICAIDEF 442 (718)
Q Consensus 371 ~vLl~G--~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~g~~~~~~g~l~~a~~gil~iDEi 442 (718)
|-+..| |++.|||++|+++++.+-.. +.......+.++. +++.........+ +..++..|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~----~~~~~~lElNASd~rgid~IR~iIk~~a~~~~--~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGE----NWRHNFLELNASDERGINVIREKVKEFARTKP--IGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcc----cccCeEEEEeCCCcccHHHHHHHHHHHHhcCC--cCCCCCEEEEEECc
Confidence 557778 99999999999999886110 0000011122221 1111000000000 10112369999999
Q ss_pred ccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCCh
Q 005024 443 DKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADM 522 (718)
Q Consensus 443 ~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~ 522 (718)
|+|+.+.|++|+..||+. +..+.+|.+||+.. .+.+++.|||..+.
T Consensus 640 D~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~~~-------------kIi~tIrSRC~~i~-------- 685 (846)
T PRK04132 640 DALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRCAIFR-------- 685 (846)
T ss_pred ccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChh-------------hCchHHhhhceEEe--------
Confidence 999999999999999952 34678889999886 78999999994442
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
+.+++.+.+..++..+.. ....+++++.+.|+.. ..|++|.
T Consensus 686 -----------------------F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~---------------s~GDlR~ 727 (846)
T PRK04132 686 -----------------------FRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYI---------------AEGDMRR 727 (846)
T ss_pred -----------------------CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------------cCCCHHH
Confidence 566777777777776544 2335789999988875 5799999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhc-ccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHH--
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALRLMQMSK-FSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHAL-- 678 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~-- 678 (718)
+.+++..+.+. ...|+.++|..+........ ........ ..........+.+++...+ .+..++.
T Consensus 728 AIn~Lq~~~~~-----~~~It~~~V~~~~~~~~~~~I~~il~~~l----~~~~~~ar~~l~ell~~~G---~~~~~iL~~ 795 (846)
T PRK04132 728 AINILQAAAAL-----DDKITDENVFLVASRARPEDIREMMLLAL----KGNFLKAREKLREILLKQG---LSGEDVLVQ 795 (846)
T ss_pred HHHHHHHHHHh-----cCCCCHHHHHHHhCCCCHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHhC---CCHHHHHHH
Confidence 99999865432 35688888877653322110 00000000 0112233444555443333 3333333
Q ss_pred --HHHHHcCCCHHHHHHHHHHHHhcCeEEEeCCeeEEEe
Q 005024 679 --NWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRF 715 (718)
Q Consensus 679 --~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~~~~i~~ 715 (718)
+.+....++.....+.+..+.+.......|.+..+++
T Consensus 796 l~~~l~~~~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL 834 (846)
T PRK04132 796 MHREVFNLPIDEPKKVELADKIGEYNFRLVEGANEMIQL 834 (846)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhHHHHCCCCHHHHH
Confidence 3344446788888888888877777666666654443
No 166
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.07 E-value=9.5e-10 Score=126.94 Aligned_cols=187 Identities=23% Similarity=0.233 Sum_probs=111.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCC-CCC--CCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGR-GSS--GVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~-~~~--~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
++||+||||||||+++++++..+...++.... ... ..+..+...++.+. .+ ......|+||||+|.+..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~-----~a---~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFE-----QA---KKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHH-----HH---HhcCCcEEEehhHhhhhh
Confidence 69999999999999999999998766544211 100 00111110111000 00 011346999999998732
Q ss_pred H--------------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccc
Q 005024 448 S--------------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFD 511 (718)
Q Consensus 448 ~--------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfd 511 (718)
. ..+.|+..|+. . .-+.++.+|||||+.. .+++++++ |||
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg---------~--~~~~~vivIaaTN~p~-------------~lD~Al~RpgRfd 314 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDG---------F--EGNEGIIVIAATNRPD-------------VLDPALLRPGRFD 314 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhc---------c--cCCCCeeEEEecCChh-------------hcCHHHhCCcccc
Confidence 1 12334444431 1 1145788999999887 79999997 999
Q ss_pred eEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcC
Q 005024 512 LLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSN 591 (718)
Q Consensus 512 li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~ 591 (718)
-.+.+ +.|+.....+|.+..+... ...+.++ ...+.+.
T Consensus 315 r~i~v-~~Pd~~~R~~Il~~~~~~~--------------------------~l~~~~d---~~~la~~------------ 352 (644)
T PRK10733 315 RQVVV-GLPDVRGREQILKVHMRRV--------------------------PLAPDID---AAIIARG------------ 352 (644)
T ss_pred eEEEc-CCCCHHHHHHHHHHHhhcC--------------------------CCCCcCC---HHHHHhh------------
Confidence 87764 7788766665543322110 0011111 1112221
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 592 TPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 592 ~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
....|.+.+.++++-|...|...++..|+.+|+.+|+..+
T Consensus 353 --t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 353 --TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 3456788888888888887877777888888888887543
No 167
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.7e-10 Score=121.68 Aligned_cols=135 Identities=20% Similarity=0.216 Sum_probs=88.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE---eecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV---QRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
.|||.||||||||+||+++|..+...++......-..|..+.. +++-+..+.. ....|+||||||.+.+
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~--------~aPcivFiDeIDAI~p 296 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKS--------NAPCIVFIDEIDAITP 296 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhc--------cCCeEEEeeccccccc
Confidence 5999999999999999999999987776532221111222211 1111111111 1246999999999876
Q ss_pred HHH-----------HHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEE
Q 005024 448 SDR-----------TAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLW 514 (718)
Q Consensus 448 ~~~-----------~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~ 514 (718)
.-. +.|+..|+.- +........+.||||||.+. .|+++|.+ |||--+
T Consensus 297 kRe~aqreMErRiVaQLlt~mD~l-------~~~~~~g~~VlVIgATnRPD-------------slDpaLRRaGRFdrEI 356 (802)
T KOG0733|consen 297 KREEAQREMERRIVAQLLTSMDEL-------SNEKTKGDPVLVIGATNRPD-------------SLDPALRRAGRFDREI 356 (802)
T ss_pred chhhHHHHHHHHHHHHHHHhhhcc-------cccccCCCCeEEEecCCCCc-------------ccCHHHhcccccccee
Confidence 533 3455555531 11112345799999999886 68888887 998655
Q ss_pred EeccCCChhHHHHHHhhhhh
Q 005024 515 LILDRADMDSDLEMARHVVY 534 (718)
Q Consensus 515 ~~~d~~~~~~d~~i~~~il~ 534 (718)
-+ ..|+......|.+.+..
T Consensus 357 ~l-~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 357 CL-GVPSETAREEILRIICR 375 (802)
T ss_pred ee-cCCchHHHHHHHHHHHh
Confidence 44 88999998888776655
No 168
>PRK06620 hypothetical protein; Validated
Probab=99.03 E-value=5e-09 Score=104.25 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=101.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDR 450 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 450 (718)
.++|+||||+|||+|++++++.... .+...... . .. ......++||||++.+.....
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~~~~~-----------~---~~--------~~~~~d~lliDdi~~~~~~~l 102 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNA-YIIKDIFF-----------N---EE--------ILEKYNAFIIEDIENWQEPAL 102 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCC-EEcchhhh-----------c---hh--------HHhcCCEEEEeccccchHHHH
Confidence 6999999999999999998876532 22110000 0 00 012346899999997753222
Q ss_pred HHH-HHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHH
Q 005024 451 TAI-HEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMA 529 (718)
Q Consensus 451 ~~L-~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~ 529 (718)
-.+ ..+.|.|. ..+++++.++. .+ .+ ++|.||+.--.++
T Consensus 103 f~l~N~~~e~g~---------------~ilits~~~p~-~l----------~l-~~L~SRl~~gl~~------------- 142 (214)
T PRK06620 103 LHIFNIINEKQK---------------YLLLTSSDKSR-NF----------TL-PDLSSRIKSVLSI------------- 142 (214)
T ss_pred HHHHHHHHhcCC---------------EEEEEcCCCcc-cc----------ch-HHHHHHHhCCceE-------------
Confidence 222 23335432 23444444443 23 57 8999999622111
Q ss_pred hhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHH
Q 005024 530 RHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRI 608 (718)
Q Consensus 530 ~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirl 608 (718)
.+.+.+.+.+...+..... ..-.+++++.++|... .+.++|.+++++..
T Consensus 143 ---------------~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~---------------~~~d~r~l~~~l~~ 192 (214)
T PRK06620 143 ---------------LLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVN---------------LPREYSKIIEILEN 192 (214)
T ss_pred ---------------eeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------ccCCHHHHHHHHHH
Confidence 1233444455555544332 3346999999999985 58899999999987
Q ss_pred HHHHHHhcCCCCccHHHHHHHH
Q 005024 609 SAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 609 a~a~A~l~~~~~V~~~dv~~ai 630 (718)
..+.|.... ..||.+.+++++
T Consensus 193 l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 193 INYFALISK-RKITISLVKEVL 213 (214)
T ss_pred HHHHHHHcC-CCCCHHHHHHHh
Confidence 666565544 469998888775
No 169
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.02 E-value=1.8e-09 Score=127.93 Aligned_cols=213 Identities=15% Similarity=0.192 Sum_probs=128.5
Q ss_pred HHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee---cCCCCCC
Q 005024 330 LARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT---TGRGSSG 406 (718)
Q Consensus 330 l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~---~~~~~~~ 406 (718)
....-...++|++.....++..|..+... |++|+||||||||++++.+++.+...... .+...-.
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r~~~~------------n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLRRRQN------------NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhcCCcC------------ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 33344457889999877777666655432 89999999999999999999886422100 0000000
Q ss_pred CcceeeEeecccccceeeec-ceEe----eecCCeeeecccccCCh-----HHH---HHHHHhhcccEEEEeeCCeEEEe
Q 005024 407 VGLTAAVQRDNVTNEMVLEG-GALV----LADMGICAIDEFDKMDE-----SDR---TAIHEVMEQQTVSIAKAGITTSL 473 (718)
Q Consensus 407 ~~l~~~~~~~~~~g~~~~~~-g~l~----~a~~gil~iDEi~~~~~-----~~~---~~L~~~me~~~i~i~k~g~~~~l 473 (718)
..+..-.......|+|.-.- ..+. ...+.|+||||++.+.. ..+ +.|..+|+.|.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~------------ 316 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE------------ 316 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC------------
Confidence 00000000001122221000 0000 01346999999999853 222 24667776553
Q ss_pred cCceEEEEEeCCCC-CCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHH
Q 005024 474 NARTAVLSAANPAW-GRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPA 552 (718)
Q Consensus 474 ~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 552 (718)
+.+|+||++.+ ..| +.++++|.+||..+. ...|+.+.-..|...+...+... .--.++.+
T Consensus 317 ---l~~IgaTT~~e~~~~---------~~~d~AL~rRf~~i~--v~eps~~~~~~iL~~~~~~~e~~-----~~v~i~d~ 377 (852)
T TIGR03345 317 ---LRTIAATTWAEYKKY---------FEKDPALTRRFQVVK--VEEPDEETAIRMLRGLAPVLEKH-----HGVLILDE 377 (852)
T ss_pred ---eEEEEecCHHHHhhh---------hhccHHHHHhCeEEE--eCCCCHHHHHHHHHHHHHhhhhc-----CCCeeCHH
Confidence 56789998762 111 278999999997554 37888888777765555432211 11347888
Q ss_pred HHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHhhH
Q 005024 553 ILRAYISAARRLSP--CVPRELEEYIAAAYSNIRQ 585 (718)
Q Consensus 553 ~l~~~i~~~~~~~p--~ls~~~~~~l~~~y~~lr~ 585 (718)
.+...+..+.++.+ .+++.|++.|-+.....|-
T Consensus 378 al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~ 412 (852)
T TIGR03345 378 AVVAAVELSHRYIPGRQLPDKAVSLLDTACARVAL 412 (852)
T ss_pred HHHHHHHHcccccccccCccHHHHHHHHHHHHHHH
Confidence 88888888877533 5999999999887766554
No 170
>PRK08727 hypothetical protein; Validated
Probab=99.02 E-value=2.7e-09 Score=108.00 Aligned_cols=178 Identities=16% Similarity=0.201 Sum_probs=112.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC----ceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR----GVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
.++|+|++|||||+|+.+++..+.. ..|.+.. .+. ..... .+. ...+..+++|||++.+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~-----~~~-----~~~~~--~~~----~l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ-----AAA-----GRLRD--ALE----ALEGRSLVALDGLESIA 106 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH-----Hhh-----hhHHH--HHH----HHhcCCEEEEeCccccc
Confidence 5999999999999999998776522 1222100 000 00000 000 11234589999999885
Q ss_pred --hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhccc--ceEEEeccCCCh
Q 005024 447 --ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRF--DLLWLILDRADM 522 (718)
Q Consensus 447 --~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf--dli~~~~d~~~~ 522 (718)
+..+..+++.++... .....+|.|+|.....|+ .+.++|.||| .+++.
T Consensus 107 ~~~~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l~---------~~~~dL~SRl~~~~~~~------- 158 (233)
T PRK08727 107 GQREDEVALFDFHNRAR------------AAGITLLYTARQMPDGLA---------LVLPDLRSRLAQCIRIG------- 158 (233)
T ss_pred CChHHHHHHHHHHHHHH------------HcCCeEEEECCCChhhhh---------hhhHHHHHHHhcCceEE-------
Confidence 345566777665321 113457777875543331 4678999997 23332
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA-ARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
+.+++.+.+..++.. +....-.+++++.++|.+. .+++.|.
T Consensus 159 -----------------------l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~---------------~~rd~r~ 200 (233)
T PRK08727 159 -----------------------LPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTH---------------GERELAG 200 (233)
T ss_pred -----------------------ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---------------CCCCHHH
Confidence 345666667777765 3333447999999999985 5689999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+.+++......|.... ..||.+.+++++.
T Consensus 201 ~l~~L~~l~~~~~~~~-~~it~~~~~~~l~ 229 (233)
T PRK08727 201 LVALLDRLDRESLAAK-RRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 9999987765454444 3699988888764
No 171
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.01 E-value=2.9e-09 Score=105.53 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=109.1
Q ss_pred CCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC----CCCCCCCCCcchhcCCChhhhcc
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA----WGRYDLRRTPAENINLPPALLSR 509 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~----~g~~~~~~~~~~~~~l~~~ll~R 509 (718)
.|++||||+++++-+..+.|.+++|+-.- ..++.|+|.- .|+. ...--.+|..|++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~--------------PiiimaTNrgit~iRGTn-----~~SphGiP~D~lDR 349 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMA--------------PIIIMATNRGITRIRGTN-----YRSPHGIPIDLLDR 349 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccC--------------cEEEEEcCCceEEeecCC-----CCCCCCCcHHHhhh
Confidence 68999999999999999999999986421 2356667765 2221 11112699999999
Q ss_pred cceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhh
Q 005024 510 FDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEA 588 (718)
Q Consensus 510 fdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~ 588 (718)
. |++- ..|++.+.+++++....+ -...++++|.+.|...
T Consensus 350 ~-lII~------------------------------t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i--------- 389 (454)
T KOG2680|consen 350 M-LIIS------------------------------TQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKI--------- 389 (454)
T ss_pred h-heee------------------------------cccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHh---------
Confidence 8 5542 456888888888876544 3457999999998875
Q ss_pred hcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccc
Q 005024 589 KSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFS 639 (718)
Q Consensus 589 ~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~ 639 (718)
....+.|....||..|...|.-+....|..+|+..|.++|.....+
T Consensus 390 -----~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~Rs 435 (454)
T KOG2680|consen 390 -----GEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKRS 435 (454)
T ss_pred -----hhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhhh
Confidence 3567899999999999999988889999999999999999766543
No 172
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.7e-09 Score=108.11 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=112.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceeeEeeccccc--ceeeecceEeeecCC-eeeeccccc--
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAAVQRDNVTN--EMVLEGGALVLADMG-ICAIDEFDK-- 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~g--~~~~~~g~l~~a~~g-il~iDEi~~-- 444 (718)
|||++||||||||++|+-++..++...-. +|.... .|-+..+- .... .|.- .+..| ++||||.|.
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA--PlG~qaVT-kiH~lFDWak------kS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA--PLGAQAVT-KIHKLFDWAK------KSRRGLLLFIDEADAFL 456 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc--ccchHHHH-HHHHHHHHHh------hcccceEEEehhhHHHH
Confidence 89999999999999999999987543211 221111 11100000 0000 1111 12233 789999974
Q ss_pred -------CChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEec
Q 005024 445 -------MDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLIL 517 (718)
Q Consensus 445 -------~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~ 517 (718)
|+++.+++|.-.|=. .|. -.-++.++.|+|.++ +++.+.-||+|-++-+
T Consensus 457 ceRnktymSEaqRsaLNAlLfR-------TGd---qSrdivLvlAtNrpg-------------dlDsAV~DRide~veF- 512 (630)
T KOG0742|consen 457 CERNKTYMSEAQRSALNALLFR-------TGD---QSRDIVLVLATNRPG-------------DLDSAVNDRIDEVVEF- 512 (630)
T ss_pred HHhchhhhcHHHHHHHHHHHHH-------hcc---cccceEEEeccCCcc-------------chhHHHHhhhhheeec-
Confidence 688888887776621 011 123577888899887 8999999999987654
Q ss_pred cCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCc
Q 005024 518 DRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRL--SPCVPRELEEYIAAAYSNIRQEEAKSNTPHS 595 (718)
Q Consensus 518 d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~ 595 (718)
+.|..++..++....++.|......... ++.-...+++ ...++ ....++.. +.+.. ....
T Consensus 513 pLPGeEERfkll~lYlnkyi~~~~~~~~-~~~~~~lfkk---~sQ~i~l~~~~t~~~---~~EaA-----------kkTe 574 (630)
T KOG0742|consen 513 PLPGEEERFKLLNLYLNKYILKPATSGK-PGKWSHLFKK---ESQRIKLAGFDTGRK---CSEAA-----------KKTE 574 (630)
T ss_pred CCCChHHHHHHHHHHHHHHhcCcCCCCC-CchhhHHHhh---hhheeeeccchHHHH---HHHHH-----------Hhcc
Confidence 8899999999888888776533222212 2222222332 11222 11122222 22221 1246
Q ss_pred ccCHHHHHHHHHHHHHHHHh
Q 005024 596 YTTVRTLLSILRISAALARL 615 (718)
Q Consensus 596 ~~s~R~l~~lirla~a~A~l 615 (718)
+.|.|++-.|+---+|.+.-
T Consensus 575 GfSGREiakLva~vQAavYg 594 (630)
T KOG0742|consen 575 GFSGREIAKLVASVQAAVYG 594 (630)
T ss_pred CCcHHHHHHHHHHHHHHHhc
Confidence 78899999988766666543
No 173
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.6e-09 Score=112.64 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=79.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCC-CCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC---
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS-SGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD--- 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~--- 446 (718)
||||+||+|+|||.||+.+|+.+.-.+..|...+ +.+|+.+..+..-...-..-..+.+..|..||+||||+|++.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 9999999999999999999999977766654432 334444332211111111122345567789999999999984
Q ss_pred -----------hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 447 -----------ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 447 -----------~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
+..|.+|+..+|--.+.+...|.....+-+...|-|+|-.
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnIL 358 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNIL 358 (564)
T ss_pred ccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceE
Confidence 4478899999997777776666655555556666666654
No 174
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.97 E-value=1.1e-09 Score=101.73 Aligned_cols=142 Identities=24% Similarity=0.227 Sum_probs=86.3
Q ss_pred ccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC---CceeecCCCCCCCcceeeEeec
Q 005024 340 GHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP---RGVYTTGRGSSGVGLTAAVQRD 416 (718)
Q Consensus 340 g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~~ 416 (718)
|++.+...+...+...... +++++||||+|||++++.+++.+. ..++........... ...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~------------~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~----~~~ 65 (151)
T cd00009 2 GQEEAIEALREALELPPPK------------NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL----VVA 65 (151)
T ss_pred chHHHHHHHHHHHhCCCCC------------eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhh----HHH
Confidence 5566666666666552111 899999999999999999999873 222211110000000 000
Q ss_pred ccccc--eeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCC
Q 005024 417 NVTNE--MVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRR 494 (718)
Q Consensus 417 ~~~g~--~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~ 494 (718)
...+. .............++++|||++.+++.....+++.++...... ..+.++.+|+++|+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~------ 132 (151)
T cd00009 66 ELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL------ 132 (151)
T ss_pred HHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc------
Confidence 00000 0011122223467899999999998888888888887643221 23567899999998752
Q ss_pred CcchhcCCChhhhcccceEEE
Q 005024 495 TPAENINLPPALLSRFDLLWL 515 (718)
Q Consensus 495 ~~~~~~~l~~~ll~Rfdli~~ 515 (718)
..+...+.+||+..+.
T Consensus 133 -----~~~~~~~~~r~~~~i~ 148 (151)
T cd00009 133 -----GDLDRALYDRLDIRIV 148 (151)
T ss_pred -----CCcChhHHhhhccEee
Confidence 1578889999985543
No 175
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=8.2e-09 Score=110.07 Aligned_cols=187 Identities=22% Similarity=0.277 Sum_probs=117.0
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc----e--e----ecCCCCC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG----V--Y----TTGRGSS 405 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~----~--~----~~~~~~~ 405 (718)
..++||+.++..+..++..|... . .+||+||+|+|||++|+.+++.+.-. . . .++....
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~---h--------a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~ 91 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLH---H--------ALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPV 91 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC---e--------eEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHH
Confidence 47999999999999999888532 1 38999999999999999999887321 0 0 0111000
Q ss_pred --------CCcceeeEee--cccccce----eee-----cceEe----eecCCeeeecccccCChHHHHHHHHhhcccEE
Q 005024 406 --------GVGLTAAVQR--DNVTNEM----VLE-----GGALV----LADMGICAIDEFDKMDESDRTAIHEVMEQQTV 462 (718)
Q Consensus 406 --------~~~l~~~~~~--~~~~g~~----~~~-----~g~l~----~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i 462 (718)
..++. .+.+ +..++.. ... ...+. ....-|++|||++.|+...+++|+..||+.
T Consensus 92 c~~i~~~~hPdl~-~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-- 168 (351)
T PRK09112 92 WRQIAQGAHPNLL-HITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-- 168 (351)
T ss_pred HHHHHcCCCCCEE-EeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC--
Confidence 00010 0000 0001100 000 00011 112349999999999999999999999863
Q ss_pred EEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCC
Q 005024 463 SIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESP 542 (718)
Q Consensus 463 ~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~ 542 (718)
+.++.+|..++... .+.+++.||+- .+
T Consensus 169 -----------p~~~~fiLit~~~~-------------~llptIrSRc~-~i---------------------------- 195 (351)
T PRK09112 169 -----------PARALFILISHSSG-------------RLLPTIRSRCQ-PI---------------------------- 195 (351)
T ss_pred -----------CCCceEEEEECChh-------------hccHHHHhhcc-EE----------------------------
Confidence 22334444444333 57799999994 33
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHH
Q 005024 543 ALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILR 607 (718)
Q Consensus 543 ~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lir 607 (718)
.+.+++.+.+..++....... .+++++.+.+..+ ..|++|.+..++.
T Consensus 196 --~l~pl~~~~~~~~L~~~~~~~-~~~~~~~~~i~~~---------------s~G~pr~Al~ll~ 242 (351)
T PRK09112 196 --SLKPLDDDELKKALSHLGSSQ-GSDGEITEALLQR---------------SKGSVRKALLLLN 242 (351)
T ss_pred --EecCCCHHHHHHHHHHhhccc-CCCHHHHHHHHHH---------------cCCCHHHHHHHHh
Confidence 246788888888888643222 2778877777664 4688998888774
No 176
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.96 E-value=7.2e-09 Score=123.35 Aligned_cols=201 Identities=16% Similarity=0.202 Sum_probs=124.2
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC----------ceeecCCCCC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR----------GVYTTGRGSS 405 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~----------~~~~~~~~~~ 405 (718)
..++|++.....++..|.....+ |++|+||||||||.+++.++..... .++....+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~------------n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~-- 244 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN------------NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG-- 244 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC------------CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH--
Confidence 45899999888887777654322 8999999999999999999987632 12211100
Q ss_pred CCcceeeEeecccccceeeecceE----eeecCCeeeecccccCCh--------HHHHHHHHhhcccEEEEeeCCeEEEe
Q 005024 406 GVGLTAAVQRDNVTNEMVLEGGAL----VLADMGICAIDEFDKMDE--------SDRTAIHEVMEQQTVSIAKAGITTSL 473 (718)
Q Consensus 406 ~~~l~~~~~~~~~~g~~~~~~g~l----~~a~~gil~iDEi~~~~~--------~~~~~L~~~me~~~i~i~k~g~~~~l 473 (718)
.+.+ ...+.|+|.-.-..+ ....+.|+|||||+.+-. +..+.|..++..|
T Consensus 245 --~l~a---g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg------------- 306 (821)
T CHL00095 245 --LLLA---GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG------------- 306 (821)
T ss_pred --HHhc---cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-------------
Confidence 0110 011223321110001 112345899999986532 2344555555544
Q ss_pred cCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHH
Q 005024 474 NARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAI 553 (718)
Q Consensus 474 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 553 (718)
.+.+|+|||+.+- ..-+..+++|.+||..+.+ +.|+.++-..|.+.+...+..... . .++.+.
T Consensus 307 --~l~~IgaTt~~ey--------~~~ie~D~aL~rRf~~I~v--~ep~~~e~~aILr~l~~~~e~~~~----v-~i~dea 369 (821)
T CHL00095 307 --ELQCIGATTLDEY--------RKHIEKDPALERRFQPVYV--GEPSVEETIEILFGLRSRYEKHHN----L-SISDKA 369 (821)
T ss_pred --CcEEEEeCCHHHH--------HHHHhcCHHHHhcceEEec--CCCCHHHHHHHHHHHHHHHHHHcC----C-CCCHHH
Confidence 3567899997731 1112578999999987543 567766666777666544321111 1 178888
Q ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHHHHHHhhH
Q 005024 554 LRAYISAARRLSP--CVPRELEEYIAAAYSNIRQ 585 (718)
Q Consensus 554 l~~~i~~~~~~~p--~ls~~~~~~l~~~y~~lr~ 585 (718)
+......+.++.+ .+++.|++.|-+.....|-
T Consensus 370 l~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 370 LEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred HHHHHHHhhccCccccCchHHHHHHHHHHHHHHh
Confidence 8888887777544 4899999999888776665
No 177
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4e-10 Score=111.52 Aligned_cols=157 Identities=26% Similarity=0.300 Sum_probs=89.8
Q ss_pred cccccHHHHHHHHHHHhCCc-cccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAP-HRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~-~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
++.|.+.+|.||.-+.+-.. .+....|-+ +..-.+||+||||||||.||+++|..+...+|..... +|......
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSS----DLvSKWmG 208 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS----DLVSKWMG 208 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehH----HHHHHHhc
Confidence 67788888888765432221 111111111 1222599999999999999999999887444432111 22111111
Q ss_pred cccccceeeecceEeee---cCCeeeecccccCChH--------H---HHHHHHhhcccEEEEeeCCeEEEecCceEEEE
Q 005024 416 DNVTNEMVLEGGALVLA---DMGICAIDEFDKMDES--------D---RTAIHEVMEQQTVSIAKAGITTSLNARTAVLS 481 (718)
Q Consensus 416 ~~~~g~~~~~~g~l~~a---~~gil~iDEi~~~~~~--------~---~~~L~~~me~~~i~i~k~g~~~~l~~~~~via 481 (718)
+. ..+....+.+| ...|+||||||.+... . ...++--|+ | + | .-+..+.|++
T Consensus 209 ES----EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-G-V-----G---~d~~gvLVLg 274 (439)
T KOG0739|consen 209 ES----EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-G-V-----G---NDNDGVLVLG 274 (439)
T ss_pred cH----HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-c-c-----c---cCCCceEEEe
Confidence 10 01111223333 3579999999987311 1 122333332 1 1 1 1235688999
Q ss_pred EeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHH
Q 005024 482 AANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDL 526 (718)
Q Consensus 482 a~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~ 526 (718)
|+|.++ .|+.|+.+||+-.+.+ +.|......
T Consensus 275 ATNiPw-------------~LDsAIRRRFekRIYI-PLPe~~AR~ 305 (439)
T KOG0739|consen 275 ATNIPW-------------VLDSAIRRRFEKRIYI-PLPEAHARA 305 (439)
T ss_pred cCCCch-------------hHHHHHHHHhhcceec-cCCcHHHhh
Confidence 999988 8999999999865443 566655544
No 178
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.96 E-value=7.4e-09 Score=120.78 Aligned_cols=173 Identities=14% Similarity=0.193 Sum_probs=127.9
Q ss_pred ccceeeecCCCcchHHHHHHHHHHHCCCceeec--CCCCCCCcceeeEeecccccceeeecceEeee--cCCeeeecccc
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINVAPRGVYTT--GRGSSGVGLTAAVQRDNVTNEMVLEGGALVLA--DMGICAIDEFD 443 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a--~~gil~iDEi~ 443 (718)
.+.++||-||+.+|||++..++|+...+.+... ...+...++.++.+.+ .+|...++.|.++.| .|--+++||++
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd-d~G~lsFkEGvLVeAlR~GyWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD-DDGSLSFKEGVLVEALRRGYWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec-CCCceeeehhHHHHHHhcCcEEEeeccc
Confidence 345899999999999999999999998876653 3333333444544443 367788999999877 56699999999
Q ss_pred cCChHHHHHHHHhhcc-cEEEEeeCCeEEEecCceEEEEEeCCCC---CCCCCCCCcchhcCCChhhhcccceEEEeccC
Q 005024 444 KMDESDRTAIHEVMEQ-QTVSIAKAGITTSLNARTAVLSAANPAW---GRYDLRRTPAENINLPPALLSRFDLLWLILDR 519 (718)
Q Consensus 444 ~~~~~~~~~L~~~me~-~~i~i~k~g~~~~l~~~~~viaa~Np~~---g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~ 519 (718)
-++.+...+|.+.+++ +.+.|+.....+.-+++|.+.||.||+. ||- .++.|+..|| +-..
T Consensus 966 LApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK----------~LSrAFRNRF-lE~h---- 1030 (4600)
T COG5271 966 LAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRK----------GLSRAFRNRF-LEMH---- 1030 (4600)
T ss_pred cCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchH----------HHHHHHHhhh-Hhhh----
Confidence 9999999999999965 6677776666666678999999999993 433 6899999999 3221
Q ss_pred CChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHh
Q 005024 520 ADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQE 586 (718)
Q Consensus 520 ~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~ 586 (718)
|..++.++|..++.... .+++.-...|++.|..++..
T Consensus 1031 --------------------------FddipedEle~ILh~rc----~iapSyakKiVeVyr~Ls~r 1067 (4600)
T COG5271 1031 --------------------------FDDIPEDELEEILHGRC----EIAPSYAKKIVEVYRGLSSR 1067 (4600)
T ss_pred --------------------------cccCcHHHHHHHHhccC----ccCHHHHHHHHHHHHHhhhh
Confidence 33455666665554322 35566667788888877654
No 179
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.1e-09 Score=104.06 Aligned_cols=185 Identities=23% Similarity=0.241 Sum_probs=107.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceeeEeecccccce-eeecceEeee---cCCeeeecccccC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAAVQRDNVTNEM-VLEGGALVLA---DMGICAIDEFDKM 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~-~~~~g~l~~a---~~gil~iDEi~~~ 445 (718)
.|||+||||||||+|+++++.....++.. .|.-. -..+-|+- ......+.+| ...|+||||+|.+
T Consensus 191 gvllygppg~gktml~kava~~t~a~firvvgsef----------vqkylgegprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF----------VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH----------HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 59999999999999999999875433322 11100 00000100 0000111222 2469999999975
Q ss_pred -----------ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccce
Q 005024 446 -----------DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDL 512 (718)
Q Consensus 446 -----------~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdl 512 (718)
+.+.|..|++.+.|-. |.. -.+++-||.|+|... .++++||+ |.|-
T Consensus 261 atkrfdaqtgadrevqril~ellnqmd------gfd--q~~nvkvimatnrad-------------tldpallrpgrldr 319 (408)
T KOG0727|consen 261 ATKRFDAQTGADREVQRILIELLNQMD------GFD--QTTNVKVIMATNRAD-------------TLDPALLRPGRLDR 319 (408)
T ss_pred hhhhccccccccHHHHHHHHHHHHhcc------CcC--cccceEEEEecCccc-------------ccCHhhcCCccccc
Confidence 3446677888876421 322 235788999999876 68888887 6654
Q ss_pred EEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHhhHhhhhc
Q 005024 513 LWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPREL--EEYIAAAYSNIRQEEAKS 590 (718)
Q Consensus 513 i~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~--~~~l~~~y~~lr~~~~~~ 590 (718)
-+-+ +.||..+.+.+... + ...-.+++++ .+++.+
T Consensus 320 kief-plpdrrqkrlvf~t-----------------------------i-tskm~ls~~vdle~~v~r------------ 356 (408)
T KOG0727|consen 320 KIEF-PLPDRRQKRLVFST-----------------------------I-TSKMNLSDEVDLEDLVAR------------ 356 (408)
T ss_pred cccC-CCCchhhhhhhHHh-----------------------------h-hhcccCCcccCHHHHhcC------------
Confidence 4321 23332222111110 0 0011233322 222221
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 591 NTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 591 ~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
+-.+|.-.+.++..-|..+|--..+-.|...|+++|..-
T Consensus 357 ---pdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~ 395 (408)
T KOG0727|consen 357 ---PDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKT 395 (408)
T ss_pred ---ccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHh
Confidence 345667788888888999998888888999999998764
No 180
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=4.2e-09 Score=113.79 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=86.6
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce---eecCCCC-------
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV---YTTGRGS------- 404 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~---~~~~~~~------- 404 (718)
..+|+||+.+++.|.-++..+.......+.++ .-.+||+||||+|||++|+.+++.+--.. ..||.-.
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l--~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGM--THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCC--CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 45789999999999988877642111111111 11489999999999999999998752110 0011100
Q ss_pred -CCCcceeeEeeccc---cc--ce--eee-c-ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEec
Q 005024 405 -SGVGLTAAVQRDNV---TN--EM--VLE-G-GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLN 474 (718)
Q Consensus 405 -~~~~l~~~~~~~~~---~g--~~--~~~-~-g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~ 474 (718)
+..++. .-.+. .+ +. ..+ . -.-..+...|++|||++.|++..+++|+..||+.. +
T Consensus 82 ~~hpD~~---~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~------------~ 146 (394)
T PRK07940 82 GTHPDVR---VVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP------------P 146 (394)
T ss_pred CCCCCEE---EeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC------------C
Confidence 000000 00000 00 00 000 0 00112345699999999999999999999998621 1
Q ss_pred CceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 475 ARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 475 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
..+.|++|+|+. .+.++++|||-.+
T Consensus 147 ~~~fIL~a~~~~--------------~llpTIrSRc~~i 171 (394)
T PRK07940 147 RTVWLLCAPSPE--------------DVLPTIRSRCRHV 171 (394)
T ss_pred CCeEEEEECChH--------------HChHHHHhhCeEE
Confidence 123556666643 6899999999433
No 181
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.94 E-value=2.5e-10 Score=104.57 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=73.9
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeee-cCCeeeecccccCChHH-
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLA-DMGICAIDEFDKMDESD- 449 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a-~~gil~iDEi~~~~~~~- 449 (718)
|||+||||||||++++.+++.+...++............... ...... .+.. .... ...+++|||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~-~~~i~~--~~~~--~~~~~~~~vl~iDe~d~l~~~~~ 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDS-EQKIRD--FFKK--AKKSAKPCVLFIDEIDKLFPKSQ 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHH-HHHHHH--HHHH--HHHTSTSEEEEEETGGGTSHHCS
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccc-cccccc--cccc--ccccccceeeeeccchhcccccc
Confidence 689999999999999999999876554321111100000000 000000 0000 0001 25799999999998776
Q ss_pred ----------HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhh-cccceEEEe
Q 005024 450 ----------RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALL-SRFDLLWLI 516 (718)
Q Consensus 450 ----------~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll-~Rfdli~~~ 516 (718)
...|+..|+...- ...++.+|+|+|... .++++++ +||+..+.+
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~~----------~~~~~~vI~ttn~~~-------------~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPSS----------KNSRVIVIATTNSPD-------------KIDPALLRSRFDRRIEF 130 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTTT----------TSSSEEEEEEESSGG-------------GSCHHHHSTTSEEEEEE
T ss_pred cccccccccccceeeeccccccc----------ccccceeEEeeCChh-------------hCCHhHHhCCCcEEEEc
Confidence 5677777764310 134689999999865 7999999 999987754
No 182
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.94 E-value=1.7e-09 Score=112.23 Aligned_cols=140 Identities=13% Similarity=0.203 Sum_probs=83.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCC---CCCcceeeEeecccccceeeecceE--eeecCCeeeecccccC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS---SGVGLTAAVQRDNVTNEMVLEGGAL--VLADMGICAIDEFDKM 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~~~~~~g~l--~~a~~gil~iDEi~~~ 445 (718)
-++|+||||||||.+++++++.+.-.++...... ..+|-.+..++..+.. +... ......|+||||||.+
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~-----A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYRE-----AADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHH-----HHHHhhccCCCeEEEEehhhhc
Confidence 6999999999999999999999866544321110 1111111111111110 0000 0112459999999976
Q ss_pred ChH---------HH---HHHHHhhccc-EEEEeeCCeE--EEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--
Q 005024 446 DES---------DR---TAIHEVMEQQ-TVSIAKAGIT--TSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS-- 508 (718)
Q Consensus 446 ~~~---------~~---~~L~~~me~~-~i~i~k~g~~--~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~-- 508 (718)
-+. .| ..|+..|+.- .+.. .|.+ ..-..++.||||+|... .|+++|++
T Consensus 225 ~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l--~G~w~~~~~~~~V~VIaTTNrpd-------------~LDpALlRpG 289 (413)
T PLN00020 225 AGRFGTTQYTVNNQMVNGTLMNIADNPTNVSL--GGDWREKEEIPRVPIIVTGNDFS-------------TLYAPLIRDG 289 (413)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCccccc--cccccccccCCCceEEEeCCCcc-------------cCCHhHcCCC
Confidence 432 11 2455555531 1111 1322 22346789999999887 79999999
Q ss_pred ccceEEEeccCCChhHHHHHHhhhh
Q 005024 509 RFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 509 Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
|||-.+. .|+.+....|.+.++
T Consensus 290 RfDk~i~---lPd~e~R~eIL~~~~ 311 (413)
T PLN00020 290 RMEKFYW---APTREDRIGVVHGIF 311 (413)
T ss_pred CCCceeC---CCCHHHHHHHHHHHh
Confidence 9999763 588877777765544
No 183
>PRK06893 DNA replication initiation factor; Validated
Probab=98.92 E-value=1.2e-08 Score=102.96 Aligned_cols=179 Identities=20% Similarity=0.225 Sum_probs=104.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC----CceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP----RGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
.++|+||||||||+|++++++.+- ...|...... +..... .+. ...+..+++|||++.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-----------~~~~~~-~~~----~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-----------QYFSPA-VLE----NLEQQDLVCLDDLQAVI 104 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-----------hhhhHH-HHh----hcccCCEEEEeChhhhc
Confidence 579999999999999999998751 2222211100 000000 000 11234699999999875
Q ss_pred --hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc--eEEEeccCCCh
Q 005024 447 --ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD--LLWLILDRADM 522 (718)
Q Consensus 447 --~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd--li~~~~d~~~~ 522 (718)
+..+..|+..++... ..| ...+|.|+|.....++ ...++|.||+. +++-
T Consensus 105 ~~~~~~~~l~~l~n~~~----~~~-------~~illits~~~p~~l~---------~~~~~L~sRl~~g~~~~------- 157 (229)
T PRK06893 105 GNEEWELAIFDLFNRIK----EQG-------KTLLLISADCSPHALS---------IKLPDLASRLTWGEIYQ------- 157 (229)
T ss_pred CChHHHHHHHHHHHHHH----HcC-------CcEEEEeCCCChHHcc---------ccchhHHHHHhcCCeee-------
Confidence 333455666664210 001 1234455554332220 23378888874 3332
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
+.+.+.+...+++..... ..-.+++++.++|... .+++.|.
T Consensus 158 -----------------------l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~---------------~~~d~r~ 199 (229)
T PRK06893 158 -----------------------LNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKR---------------LDRDMHT 199 (229)
T ss_pred -----------------------CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---------------ccCCHHH
Confidence 334455555555544332 3447999999999984 6889999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
|++++..... +.+.....||...|++++.
T Consensus 200 l~~~l~~l~~-~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 200 LFDALDLLDK-ASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHHH-HHHhcCCCCCHHHHHHHhc
Confidence 9999986543 3343334699999988764
No 184
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.91 E-value=7.3e-09 Score=107.36 Aligned_cols=113 Identities=15% Similarity=0.229 Sum_probs=75.2
Q ss_pred CCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC----CCCCCCCCCcchhcCCChhhhcc
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA----WGRYDLRRTPAENINLPPALLSR 509 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~----~g~~~~~~~~~~~~~l~~~ll~R 509 (718)
.||+||||+++++-+..+.|.++||... -..||.|+|.. .|+ ....-..+|..||||
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~--------------sPiiIlATNRg~~~irGt-----~~~sphGiP~DlLDR 339 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL--------------SPIIILATNRGITKIRGT-----DIISPHGIPLDLLDR 339 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTT-----S-EEETT--HHHHTT
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC--------------CcEEEEecCceeeeccCc-----cCcCCCCCCcchHhh
Confidence 5899999999999999999999999642 23567888865 232 122233799999999
Q ss_pred cceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhh
Q 005024 510 FDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEA 588 (718)
Q Consensus 510 fdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~ 588 (718)
+ +++. ..|++.+++++.+....+ ....++++|.+.|....
T Consensus 340 l-lII~------------------------------t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig-------- 380 (398)
T PF06068_consen 340 L-LIIR------------------------------TKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIG-------- 380 (398)
T ss_dssp E-EEEE------------------------------E----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHH--------
T ss_pred c-EEEE------------------------------CCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHh--------
Confidence 9 6654 356888899998886554 45579999999998863
Q ss_pred hcCCCCcccCHHHHHHHHHHHH
Q 005024 589 KSNTPHSYTTVRTLLSILRISA 610 (718)
Q Consensus 589 ~~~~~~~~~s~R~l~~lirla~ 610 (718)
...|.|....|+..|.
T Consensus 381 ------~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 381 ------VETSLRYAIQLITPAS 396 (398)
T ss_dssp ------HHS-HHHHHHCHHHHH
T ss_pred ------hhccHHHHHHhhhhhh
Confidence 4577888888877653
No 185
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.8e-09 Score=114.83 Aligned_cols=171 Identities=23% Similarity=0.323 Sum_probs=105.2
Q ss_pred CcccccHHHHHHHHHHHhCCcc-ccCCCCccccccc-eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE
Q 005024 336 PEIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDL-HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV 413 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i-~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~ 413 (718)
-+|.|.+.+|+++..+.+-+.. .....|. |..+ .+||.||||||||+|++++|..+.-.++... +..|+...
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS----assLtsK~ 226 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS----ASSLTSKY 226 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceEeecc----HHHhhhhc
Confidence 4788999999888755443321 1112222 1111 5899999999999999999999765544321 11232222
Q ss_pred eecccccceeeecceEeee---cCCeeeecccccCChH--------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEE
Q 005024 414 QRDNVTNEMVLEGGALVLA---DMGICAIDEFDKMDES--------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSA 482 (718)
Q Consensus 414 ~~~~~~g~~~~~~g~l~~a---~~gil~iDEi~~~~~~--------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa 482 (718)
.... +..++ ..+..| ..+|+||||+|++-.. .+-...+.+-+ ..|....-+.++.||+|
T Consensus 227 ~Ge~---eK~vr-alf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq------~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 227 VGES---EKLVR-ALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQ------FDGKNSAPDDRVLVIGA 296 (428)
T ss_pred cChH---HHHHH-HHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhh------hccccCCCCCeEEEEec
Confidence 1111 11111 011111 3579999999976211 11122222221 22444445569999999
Q ss_pred eCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhc
Q 005024 483 ANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVH 536 (718)
Q Consensus 483 ~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~ 536 (718)
+|.++ .++++++.|| .-+++...|+.+....+..+++..+
T Consensus 297 TN~P~-------------e~Dea~~Rrf-~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 297 TNRPW-------------ELDEAARRRF-VKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred CCCch-------------HHHHHHHHHh-hceeeecCCCHHHHHHHHHHHHHhC
Confidence 99998 8999999999 5555679999999988888877654
No 186
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.88 E-value=1.7e-08 Score=119.94 Aligned_cols=213 Identities=18% Similarity=0.244 Sum_probs=120.6
Q ss_pred HHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee---cCCCCCC
Q 005024 330 LARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT---TGRGSSG 406 (718)
Q Consensus 330 l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~---~~~~~~~ 406 (718)
...--...++|++.....++..|...... |++|+||||||||++++.++..+...... .+...-.
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r~~~~------------n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQRRTKN------------NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhcCCcC------------ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 33333346899998877777666655322 89999999999999999999987432100 0000000
Q ss_pred CcceeeEeeccccccee--eecc--eEeee-cCCeeeecccccCChH--------HHHHHHHhhcccEEEEeeCCeEEEe
Q 005024 407 VGLTAAVQRDNVTNEMV--LEGG--ALVLA-DMGICAIDEFDKMDES--------DRTAIHEVMEQQTVSIAKAGITTSL 473 (718)
Q Consensus 407 ~~l~~~~~~~~~~g~~~--~~~g--~l~~a-~~gil~iDEi~~~~~~--------~~~~L~~~me~~~i~i~k~g~~~~l 473 (718)
..+........+.|+|. +..- .+..+ .+-|+||||++.+... .++.|..+++.|
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g------------- 306 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG------------- 306 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-------------
Confidence 00000000001112221 0000 00011 2349999999988532 345555555443
Q ss_pred cCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHH
Q 005024 474 NARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAI 553 (718)
Q Consensus 474 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 553 (718)
...+||||++.+-+ .-++++++|.+||+.+++ ..|+.+.-..|.+.+...+... .--.++.+.
T Consensus 307 --~l~~IgaTt~~e~r--------~~~~~d~al~rRf~~i~v--~eP~~~~~~~iL~~l~~~~e~~-----~~v~~~d~a 369 (857)
T PRK10865 307 --ELHCVGATTLDEYR--------QYIEKDAALERRFQKVFV--AEPSVEDTIAILRGLKERYELH-----HHVQITDPA 369 (857)
T ss_pred --CCeEEEcCCCHHHH--------HHhhhcHHHHhhCCEEEe--CCCCHHHHHHHHHHHhhhhccC-----CCCCcCHHH
Confidence 46789999987421 112689999999987654 6777766666665554322111 112355666
Q ss_pred HHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhh
Q 005024 554 LRAYISAARRL--SPCVPRELEEYIAAAYSNIR 584 (718)
Q Consensus 554 l~~~i~~~~~~--~p~ls~~~~~~l~~~y~~lr 584 (718)
+...+..+.++ ...+|+.|.+.+-.....+|
T Consensus 370 ~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~r 402 (857)
T PRK10865 370 IVAAATLSHRYIADRQLPDKAIDLIDEAASSIR 402 (857)
T ss_pred HHHHHHHhhccccCCCCChHHHHHHHHHhcccc
Confidence 66654444443 34699999998877655544
No 187
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=6.3e-08 Score=109.58 Aligned_cols=225 Identities=19% Similarity=0.195 Sum_probs=146.0
Q ss_pred eeeecC----CCcchHHHHHHHHHHHCC---C-----------------ceeecCCCCCCCcceeeEeeccccc------
Q 005024 371 HICLMG----DPGVAKSQLLKHIINVAP---R-----------------GVYTTGRGSSGVGLTAAVQRDNVTN------ 420 (718)
Q Consensus 371 ~vLl~G----~pGtGKt~la~~i~~~~~---~-----------------~~~~~~~~~~~~~l~~~~~~~~~~g------ 420 (718)
++...| .+|.+++..++.+-...+ + ..+..........|.+++..+++.|
T Consensus 133 ~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~ 212 (647)
T COG1067 133 QIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTG 212 (647)
T ss_pred hhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCC
Confidence 555666 889999888765554421 1 1122223333446777777666655
Q ss_pred ceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEe-----eCCeE---EEecCceEEEEEeCCCCCCCCC
Q 005024 421 EMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIA-----KAGIT---TSLNARTAVLSAANPAWGRYDL 492 (718)
Q Consensus 421 ~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~-----k~g~~---~~l~~~~~viaa~Np~~g~~~~ 492 (718)
...+++|++..||+|||||||++.|....+..++.+|++++..+. ..|.. -.+|+++.+|++.|+..- +
T Consensus 213 ~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l-~-- 289 (647)
T COG1067 213 HIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDL-E-- 289 (647)
T ss_pred cccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHH-H--
Confidence 456889999999999999999999998889899999887644332 11121 235688999999997720 0
Q ss_pred CCCcchhcCCChhhhcccceE---EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCC
Q 005024 493 RRTPAENINLPPALLSRFDLL---WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR--LSPC 567 (718)
Q Consensus 493 ~~~~~~~~~l~~~ll~Rfdli---~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~ 567 (718)
.+.+++-+|-+++ ..+.++.. ..+. .....++.|.....+ .-|.
T Consensus 290 --------~l~~~~~~r~~g~~y~ae~~~~m~-~~~~----------------------nr~k~~~~~~q~v~~d~~ip~ 338 (647)
T COG1067 290 --------DLHEPDRSRIEGFGYEAEFEDTMP-ITDA----------------------NRSKLVQFYVQELARDGNIPH 338 (647)
T ss_pred --------hhcccCHHHHhhcceEEEEcCCCC-CChH----------------------HHHHHHHHHHHHHHhcCCCCC
Confidence 3445555555442 22211111 1110 011122333333332 3578
Q ss_pred CCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Q 005024 568 VPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQ 634 (718)
Q Consensus 568 ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~ 634 (718)
++.+|.+.|..+.... . +.....+.++|.|.++++.|.-.|..++++.|+.+||++|+....
T Consensus 339 ~~~~Av~~li~~a~R~--A---g~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~ 400 (647)
T COG1067 339 LDKDAVEELIREAARR--A---GDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKRE 400 (647)
T ss_pred CCHHHHHHHHHHHHHh--c---cccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhhh
Confidence 8889888887754321 1 234567899999999999999999999999999999999998743
No 188
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.84 E-value=2.2e-08 Score=110.24 Aligned_cols=189 Identities=17% Similarity=0.271 Sum_probs=110.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC----CceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP----RGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
+++|+||||+|||+|+++++..+. +..|........ .+..+ .+ .+.. +.-.-......+++|||++.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~-l~---~~~~--~~f~~~~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSA-IR---SGEM--QRFRQFYRNVDALFIEDIEVFS 215 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHH-Hh---cchH--HHHHHHcccCCEEEEcchhhhc
Confidence 699999999999999999998752 122222110000 00000 00 0000 0000001245799999999985
Q ss_pred h--HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc--eEEEeccCCCh
Q 005024 447 E--SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD--LLWLILDRADM 522 (718)
Q Consensus 447 ~--~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd--li~~~~d~~~~ 522 (718)
. ..+..++..+..-. .....+|.|+|.....+ -.+.+.|.|||. +.+-
T Consensus 216 ~k~~~qeelf~l~N~l~------------~~~k~IIlts~~~p~~l---------~~l~~rL~SR~~~Gl~~~------- 267 (445)
T PRK12422 216 GKGATQEEFFHTFNSLH------------TEGKLIVISSTCAPQDL---------KAMEERLISRFEWGIAIP------- 267 (445)
T ss_pred CChhhHHHHHHHHHHHH------------HCCCcEEEecCCCHHHH---------hhhHHHHHhhhcCCeEEe-------
Confidence 4 34555555543210 00123555555331111 157899999995 4543
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
+.+.+.+.+..++..... ....+++++.++|... ...++|+
T Consensus 268 -----------------------l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~---------------~~~dir~ 309 (445)
T PRK12422 268 -----------------------LHPLTKEGLRSFLERKAEALSIRIEETALDFLIEA---------------LSSNVKS 309 (445)
T ss_pred -----------------------cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---------------cCCCHHH
Confidence 233445555555554333 3457999999999884 5789999
Q ss_pred HHHHHHHH---HHHHHhcCCCCccHHHHHHHHHHH
Q 005024 602 LLSILRIS---AALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 602 l~~lirla---~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
|++.+... .+.+.+.+ ..++.+++.+++.-+
T Consensus 310 L~g~l~~l~~~~a~~~~~~-~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 310 LLHALTLLAKRVAYKKLSH-QLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHh
Confidence 99999755 46777765 458999999888744
No 189
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.84 E-value=4.3e-08 Score=109.28 Aligned_cols=189 Identities=22% Similarity=0.264 Sum_probs=109.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC------ceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR------GVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
+++|+||||+|||+|+++++..+.. ..|........ .+.... +......+ . . ....-.+++|||++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~--~-~--~~~~~dlLiiDDi~~ 222 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNAL-RNNTMEEF--K-E--KYRSVDVLLIDDIQF 222 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHH-HcCcHHHH--H-H--HHhcCCEEEEehhhh
Confidence 6999999999999999999987622 11211110000 000000 00000000 0 0 011345999999998
Q ss_pred CChH--HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc--eEEEeccCC
Q 005024 445 MDES--DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD--LLWLILDRA 520 (718)
Q Consensus 445 ~~~~--~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd--li~~~~d~~ 520 (718)
+... .+..|+..++.-. ..| ..+|.|+|.....+ -.+.+.|.|||. +++.+ ..|
T Consensus 223 l~~~~~~~~~l~~~~n~l~----~~~--------~~iiits~~~p~~l---------~~l~~~l~SRl~~gl~v~i-~~p 280 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALH----EAG--------KQIVLTSDRPPKEL---------PGLEERLRSRFEWGLTVDI-EPP 280 (450)
T ss_pred hcCCHHHHHHHHHHHHHHH----HCC--------CcEEEECCCCHHHH---------HHHHHHHHhHhcCCeeEEe-cCC
Confidence 7542 3555555443210 001 12344454332111 037789999995 33332 334
Q ss_pred ChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCH
Q 005024 521 DMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTV 599 (718)
Q Consensus 521 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~ 599 (718)
+ .+...+++..... ....+++++.++|.+ ...+++
T Consensus 281 d-----------------------------~~~r~~il~~~~~~~~~~l~~e~l~~ia~---------------~~~~~~ 316 (450)
T PRK00149 281 D-----------------------------LETRIAILKKKAEEEGIDLPDEVLEFIAK---------------NITSNV 316 (450)
T ss_pred C-----------------------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHc---------------CcCCCH
Confidence 3 3444444444322 344699999999988 368899
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 600 RTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 600 R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
|.|++++....+.|...++ .||.+.+.+++.-+
T Consensus 317 R~l~~~l~~l~~~~~~~~~-~it~~~~~~~l~~~ 349 (450)
T PRK00149 317 RELEGALNRLIAYASLTGK-PITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHh
Confidence 9999999988888877654 48999999998865
No 190
>PRK09087 hypothetical protein; Validated
Probab=98.83 E-value=2.3e-08 Score=100.44 Aligned_cols=173 Identities=18% Similarity=0.152 Sum_probs=107.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDR 450 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 450 (718)
.++|+|++|+|||+|++++++... ..|.... .++.+. +.....+.++||+++.++. .+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~-~~~i~~~--------------~~~~~~------~~~~~~~~l~iDDi~~~~~-~~ 103 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD-ALLIHPN--------------EIGSDA------ANAAAEGPVLIEDIDAGGF-DE 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC-CEEecHH--------------HcchHH------HHhhhcCeEEEECCCCCCC-CH
Confidence 599999999999999998886642 1122111 000000 0001136899999998753 35
Q ss_pred HHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcC-CChhhhcccc--eEEEeccCCChhHHHH
Q 005024 451 TAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENIN-LPPALLSRFD--LLWLILDRADMDSDLE 527 (718)
Q Consensus 451 ~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~-l~~~ll~Rfd--li~~~~d~~~~~~d~~ 527 (718)
..|+..+..- ......+|.|++.....| . ..++|.|||. +++.
T Consensus 104 ~~lf~l~n~~------------~~~g~~ilits~~~p~~~----------~~~~~dL~SRl~~gl~~~------------ 149 (226)
T PRK09087 104 TGLFHLINSV------------RQAGTSLLMTSRLWPSSW----------NVKLPDLKSRLKAATVVE------------ 149 (226)
T ss_pred HHHHHHHHHH------------HhCCCeEEEECCCChHHh----------ccccccHHHHHhCCceee------------
Confidence 5565554310 011234555565443333 3 3688999995 3332
Q ss_pred HHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHH
Q 005024 528 MARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSIL 606 (718)
Q Consensus 528 i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~li 606 (718)
+.+.+.+.+.+++....+ ..-.+++++.++|... ...+.|.++.++
T Consensus 150 ------------------l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~---------------~~r~~~~l~~~l 196 (226)
T PRK09087 150 ------------------IGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSR---------------MERSLFAAQTIV 196 (226)
T ss_pred ------------------cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------hhhhHHHHHHHH
Confidence 344555566666655433 3447999999999985 468899999888
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 607 RISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 607 rla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
....+.|.... ..||...+++++..+
T Consensus 197 ~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 197 DRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 76656565544 458999999988754
No 191
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4.3e-08 Score=99.17 Aligned_cols=138 Identities=18% Similarity=0.280 Sum_probs=85.2
Q ss_pred cCCeeeecccccCCh------------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhc
Q 005024 433 DMGICAIDEFDKMDE------------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENI 500 (718)
Q Consensus 433 ~~gil~iDEi~~~~~------------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~ 500 (718)
+.||+||||||++-. ..|--|+...|--+++- |.|...+ .++.+|||. -|.-.++ .
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~T-KyG~VkT--dHILFIasG-----AFh~sKP----S 317 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVST-KYGPVKT--DHILFIASG-----AFHVAKP----S 317 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeec-ccccccc--ceEEEEecC-----ceecCCh----h
Confidence 679999999998722 23445666666444432 3343322 356677653 3321111 2
Q ss_pred CCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHH
Q 005024 501 NLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR--LSPCVPRELEEYIAA 578 (718)
Q Consensus 501 ~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~ls~~~~~~l~~ 578 (718)
+|-|.|.-||.+-+-+ +..+.+.-.+|... -....+++|.+..+. +.-.|++++++.|++
T Consensus 318 DLiPELQGRfPIRVEL-~~Lt~~Df~rILte-----------------p~~sLikQY~aLlkTE~v~l~FtddaI~~iAe 379 (444)
T COG1220 318 DLIPELQGRFPIRVEL-DALTKEDFERILTE-----------------PKASLIKQYKALLKTEGVELEFTDDAIKRIAE 379 (444)
T ss_pred hcChhhcCCCceEEEc-ccCCHHHHHHHHcC-----------------cchHHHHHHHHHHhhcCeeEEecHHHHHHHHH
Confidence 7889999999766654 44443333333111 234578888877665 455699999999999
Q ss_pred HHHHhhHhhhhcCCCCcccCHHHHHHHHH
Q 005024 579 AYSNIRQEEAKSNTPHSYTTVRTLLSILR 607 (718)
Q Consensus 579 ~y~~lr~~~~~~~~~~~~~s~R~l~~lir 607 (718)
...++... ...+.+|.|-.++.
T Consensus 380 iA~~vN~~-------~ENIGARRLhTvlE 401 (444)
T COG1220 380 IAYQVNEK-------TENIGARRLHTVLE 401 (444)
T ss_pred HHHHhccc-------ccchhHHHHHHHHH
Confidence 87665443 45677898887775
No 192
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.82 E-value=1.1e-08 Score=122.11 Aligned_cols=208 Identities=15% Similarity=0.210 Sum_probs=120.8
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee---cCCCCCCCcceee
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT---TGRGSSGVGLTAA 412 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~---~~~~~~~~~l~~~ 412 (718)
..++|++.....++..|..+... |++|+||||||||++++.++..+...... .+...-...+..-
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~------------n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKN------------NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCC------------ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 35889998877777777665322 89999999999999999999876432100 0000000000000
Q ss_pred Eeecccccceeee-cceEe---e-ecCCeeeecccccCCh--------HHHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 413 VQRDNVTNEMVLE-GGALV---L-ADMGICAIDEFDKMDE--------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 413 ~~~~~~~g~~~~~-~g~l~---~-a~~gil~iDEi~~~~~--------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
.....+.|+|.-. ...+. . ..+.|+||||++.+.. +..+.|..+++.| +..+
T Consensus 241 ~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g---------------~i~~ 305 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG---------------ELHC 305 (852)
T ss_pred hhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC---------------ceEE
Confidence 0000111211100 00000 1 1245999999998752 1233344444332 4678
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYIS 559 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~ 559 (718)
|+|+|+..-+ ..+++++++.+||..+++ ..|+.+.-..|.+.+...+... .-..++.+.+...+.
T Consensus 306 IgaTt~~e~r--------~~~~~d~al~rRf~~i~v--~~p~~~~~~~iL~~~~~~~e~~-----~~v~~~d~~i~~~~~ 370 (852)
T TIGR03346 306 IGATTLDEYR--------KYIEKDAALERRFQPVFV--DEPTVEDTISILRGLKERYEVH-----HGVRITDPAIVAAAT 370 (852)
T ss_pred EEeCcHHHHH--------HHhhcCHHHHhcCCEEEe--CCCCHHHHHHHHHHHHHHhccc-----cCCCCCHHHHHHHHH
Confidence 8999877311 112789999999987653 7777776666665554432111 112367778888777
Q ss_pred HHHhcCC--CCCHHHHHHHHHHHHHhhH
Q 005024 560 AARRLSP--CVPRELEEYIAAAYSNIRQ 585 (718)
Q Consensus 560 ~~~~~~p--~ls~~~~~~l~~~y~~lr~ 585 (718)
.+.++.+ .+|+.|++.|-+.....|.
T Consensus 371 ls~~yi~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 371 LSHRYITDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred hccccccccCCchHHHHHHHHHHHHHHh
Confidence 7766533 5899999999887766554
No 193
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.82 E-value=3.7e-08 Score=104.60 Aligned_cols=215 Identities=12% Similarity=0.119 Sum_probs=118.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChH--
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES-- 448 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~-- 448 (718)
|++++||||||||+++.+++..+ ...+|...+.+.|..... + -..|. .+.-.+++|||+..++-+
T Consensus 211 Nli~lGp~GTGKThla~~l~~~~---a~~sG~f~T~a~Lf~~L~----~----~~lg~--v~~~DlLI~DEvgylp~~~~ 277 (449)
T TIGR02688 211 NLIELGPKGTGKSYIYNNLSPYV---ILISGGTITVAKLFYNIS----T----RQIGL--VGRWDVVAFDEVATLKFAKP 277 (449)
T ss_pred cEEEECCCCCCHHHHHHHHhHHH---HHHcCCcCcHHHHHHHHH----H----HHHhh--hccCCEEEEEcCCCCcCCch
Confidence 99999999999999999876552 112333233323322111 1 11122 233468999999996543
Q ss_pred --HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCC--CCC----CCCCCcchhcCCChhhhcccceEEEeccCC
Q 005024 449 --DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAW--GRY----DLRRTPAENINLPPALLSRFDLLWLILDRA 520 (718)
Q Consensus 449 --~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~--g~~----~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~ 520 (718)
....|...|++|.++.. .. ...++++++.-.|-.. ... +--.++.+-+. +.|++|||..+.--.+.|
T Consensus 278 ~~~v~imK~yMesg~fsRG--~~--~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~-DsAflDRiH~yiPGWeip 352 (449)
T TIGR02688 278 KELIGILKNYMESGSFTRG--DE--TKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMR-DSAFLDRIHGYLPGWEIP 352 (449)
T ss_pred HHHHHHHHHHHHhCceecc--ce--eeeeeeEEEEEcccCCcchhhcCcccccccCChhhh-hhHHHHhhhccCCCCcCc
Confidence 34677888999998874 22 3345566665556441 111 11122333334 678888886554332223
Q ss_pred ChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHH
Q 005024 521 DMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVR 600 (718)
Q Consensus 521 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R 600 (718)
....+ .+. .--.+..+.+.+++...|+. .+++ .+.++ -..+...+.|
T Consensus 353 k~~~e------~~t----------~~yGl~~DylsE~l~~lR~~--~~~~----~~~~~-----------~~l~~~~~~R 399 (449)
T TIGR02688 353 KIRKE------MFS----------NGYGFVVDYFAEALRELRER--EYAD----IVDRH-----------FSLSPNLNTR 399 (449)
T ss_pred cCCHH------Hcc----------cCCcchHHHHHHHHHHHHhh--HHHH----hhhhh-----------eecCCCcchh
Confidence 22111 000 01113334444444333321 1111 11111 1124568899
Q ss_pred HHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHhhh
Q 005024 601 TLLSILRISAALARL-RFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 601 ~l~~lirla~a~A~l-~~~~~V~~~dv~~ai~l~~~~ 636 (718)
.-..+-+..-++.++ .-...++.+|++++++.....
T Consensus 400 D~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale~ 436 (449)
T TIGR02688 400 DVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALEG 436 (449)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 999999988888887 556779999999888765443
No 194
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.82 E-value=2.2e-08 Score=100.86 Aligned_cols=164 Identities=22% Similarity=0.204 Sum_probs=101.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccc-----cceeeecc--eEe-eecCCeeeeccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVT-----NEMVLEGG--ALV-LADMGICAIDEF 442 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----g~~~~~~g--~l~-~a~~gil~iDEi 442 (718)
|+|++||||||||....+++..+... .+..+-...+.++..++... ..+....+ .+. .+.-..+++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~---~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSP---HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCC---CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecch
Confidence 99999999999999999999887543 11111111222222221110 00000000 000 123357999999
Q ss_pred ccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCCh
Q 005024 443 DKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADM 522 (718)
Q Consensus 443 ~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~ 522 (718)
|.|..+.|++|.++.|+- .++++|..-+|+.. .+.+++.+||--+
T Consensus 141 DaMT~~AQnALRRviek~-------------t~n~rF~ii~n~~~-------------ki~pa~qsRctrf--------- 185 (360)
T KOG0990|consen 141 DAMTRDAQNALRRVIEKY-------------TANTRFATISNPPQ-------------KIHPAQQSRCTRF--------- 185 (360)
T ss_pred hHhhHHHHHHHHHHHHHh-------------ccceEEEEeccChh-------------hcCchhhcccccC---------
Confidence 999999999999987743 23344444488876 7899999999221
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSP-CVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p-~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
.+.|++.......+....+..+ ..+++....+... ..++.|.
T Consensus 186 ----------------------rf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~---------------s~gDmr~ 228 (360)
T KOG0990|consen 186 ----------------------RFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL---------------SVGDMRV 228 (360)
T ss_pred ----------------------CCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH---------------hHHHHHH
Confidence 3567777777777777766433 4677666654432 3566777
Q ss_pred HHHHHHHH
Q 005024 602 LLSILRIS 609 (718)
Q Consensus 602 l~~lirla 609 (718)
..+.+..+
T Consensus 229 a~n~Lqs~ 236 (360)
T KOG0990|consen 229 ALNYLQSI 236 (360)
T ss_pred HHHHHHHH
Confidence 77777643
No 195
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.81 E-value=5.5e-08 Score=97.42 Aligned_cols=185 Identities=19% Similarity=0.289 Sum_probs=102.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee--cCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT--TGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES 448 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~ 448 (718)
.-.+.||+|||||.+++.+++.+++.+++ |....+.. ....-..| . ...|..+|+|||++++.+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~-----~l~ril~G-------~--~~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQ-----SLSRILKG-------L--AQSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HH-----HHHHHHHH-------H--HHHT-EEEEETCCCSSHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHH-----HHHHHHHH-------H--hhcCchhhhhhhhhhhHH
Confidence 45689999999999999999999988766 33322211 11111111 1 012456899999999998
Q ss_pred HHHHH-------HHhhcccEEEEeeCCeEEEecCceEEEEEeCCCC-CCCCCCCCcchhcCCChhhhcccceEEEeccCC
Q 005024 449 DRTAI-------HEVMEQQTVSIAKAGITTSLNARTAVLSAANPAW-GRYDLRRTPAENINLPPALLSRFDLLWLILDRA 520 (718)
Q Consensus 449 ~~~~L-------~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~ 520 (718)
..+.+ ..++..+.-.+.-.|....++..+.+..|.||.+ |+. .+|+.|..-|--+.+. .|
T Consensus 100 vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~----------~LP~nLk~lFRpvam~--~P 167 (231)
T PF12774_consen 100 VLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRS----------ELPENLKALFRPVAMM--VP 167 (231)
T ss_dssp HHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC------------S-HHHCTTEEEEE----S-
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcc----------cCCHhHHHHhheeEEe--CC
Confidence 87665 3444433333333489999999999999999985 444 7999998888555442 33
Q ss_pred ChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHH
Q 005024 521 DMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVR 600 (718)
Q Consensus 521 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R 600 (718)
|.. .|++ ....+.-+ .-+....+.+...|...+..- +...+...+.|
T Consensus 168 D~~---~I~e--------------------------i~L~s~GF--~~a~~La~kl~~l~~l~~~~l--S~q~hydfgLR 214 (231)
T PF12774_consen 168 DLS---LIAE--------------------------ILLLSQGF--KDAKSLAKKLVSLFQLCKEQL--SKQDHYDFGLR 214 (231)
T ss_dssp -HH---HHHH--------------------------HHHHCCCT--SSHHHHHHHHHHHHHHHHHCS---SSTT---SHH
T ss_pred CHH---HHHH--------------------------HHHHHcCc--hhHHHHHHHHHHHHHHHHHhh--ccCccccccHH
Confidence 321 1111 11111111 223455566677766655542 22346678899
Q ss_pred HHHHHHHHHHHHHH
Q 005024 601 TLLSILRISAALAR 614 (718)
Q Consensus 601 ~l~~lirla~a~A~ 614 (718)
.+.++++.|..+-|
T Consensus 215 alk~vl~~a~~~kr 228 (231)
T PF12774_consen 215 ALKSVLRMAGSLKR 228 (231)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999877643
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.81 E-value=1.9e-08 Score=118.72 Aligned_cols=159 Identities=23% Similarity=0.245 Sum_probs=91.9
Q ss_pred cccccHHHHHHHHHHHhCCc-cccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAP-HRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~-~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
+|.|.+.++..|...+.... .+.......+...-++||+||||||||+++++++..+...++..... .+..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~----~i~~---- 250 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGP----EIMS---- 250 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecH----HHhc----
Confidence 46788887777654442210 00000011112222799999999999999999999986554432110 0000
Q ss_pred cccccce--eeecceEe---eecCCeeeecccccCCh-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 416 DNVTNEM--VLEGGALV---LADMGICAIDEFDKMDE-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 416 ~~~~g~~--~~~~g~l~---~a~~gil~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
...|+. .+. ..+. .....++||||+|.+.+ ..+..|++.|+.-. -...+.|
T Consensus 251 -~~~g~~~~~l~-~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~viv 317 (733)
T TIGR01243 251 -KYYGESEERLR-EIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIV 317 (733)
T ss_pred -ccccHHHHHHH-HHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEE
Confidence 000100 000 0000 11246999999988642 24566777775310 1235788
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHh
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMAR 530 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~ 530 (718)
|+|+|+.. .+++++.+ |||..+.+ +.|+.....+|..
T Consensus 318 I~atn~~~-------------~ld~al~r~gRfd~~i~i-~~P~~~~R~~Il~ 356 (733)
T TIGR01243 318 IGATNRPD-------------ALDPALRRPGRFDREIVI-RVPDKRARKEILK 356 (733)
T ss_pred EeecCChh-------------hcCHHHhCchhccEEEEe-CCcCHHHHHHHHH
Confidence 99999876 68888887 99877654 7777777666655
No 197
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=8.1e-09 Score=113.25 Aligned_cols=163 Identities=22% Similarity=0.223 Sum_probs=104.1
Q ss_pred cccccHHHHHHHHHHHhCCccc-cCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCC----Cccee
Q 005024 337 EIYGHEDIKKALLLLLVGAPHR-KLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSG----VGLTA 411 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~~-~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~----~~l~~ 411 (718)
+|.|..++|.++.-.+.....- .......+|-..+|||+||||||||.||.+++..++..+... +++.- .|-..
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisv-KGPElL~KyIGaSE 746 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISV-KGPELLSKYIGASE 746 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEe-cCHHHHHHHhcccH
Confidence 6888999999998877765421 122223345555899999999999999999999987655432 22110 01011
Q ss_pred eEeecccccceeeecceEeeecCCeeeecccccCChH-----------HHHHHHHhhcccEEEEeeCCeEEEecCceEEE
Q 005024 412 AVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES-----------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVL 480 (718)
Q Consensus 412 ~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~vi 480 (718)
..+|+-+..+ ..|...|+|+||||.+.|. ..+.|+.-|+- ..- -..+.|+
T Consensus 747 q~vR~lF~rA--------~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG---------~Eg--l~GV~i~ 807 (952)
T KOG0735|consen 747 QNVRDLFERA--------QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG---------AEG--LDGVYIL 807 (952)
T ss_pred HHHHHHHHHh--------hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcc---------ccc--cceEEEE
Confidence 1122222111 1245679999999998543 34567777752 111 1256788
Q ss_pred EEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhh
Q 005024 481 SAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 481 aa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
|||..+. -+++|||+ |+|-.+.. +.|+..+..+|.+-+.
T Consensus 808 aaTsRpd-------------liDpALLRpGRlD~~v~C-~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 808 AATSRPD-------------LIDPALLRPGRLDKLVYC-PLPDEPERLEILQVLS 848 (952)
T ss_pred EecCCcc-------------ccCHhhcCCCccceeeeC-CCCCcHHHHHHHHHHh
Confidence 8887765 68999998 99876654 8888887777755443
No 198
>PRK05642 DNA replication initiation factor; Validated
Probab=98.78 E-value=7.8e-08 Score=97.33 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=104.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC----CceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP----RGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
+++|+|++|+|||+|+++++..+. +..|.+.. .+... ...+ .+ ...+..+++||+++...
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~-----~~~~~------~~~~-~~----~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA-----ELLDR------GPEL-LD----NLEQYELVCLDDLDVIA 110 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH-----HHHhh------hHHH-HH----hhhhCCEEEEechhhhc
Confidence 789999999999999999987542 11222111 00000 0000 00 01123589999999774
Q ss_pred --hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc--eEEEeccCCCh
Q 005024 447 --ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD--LLWLILDRADM 522 (718)
Q Consensus 447 --~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd--li~~~~d~~~~ 522 (718)
+..+..|+..++.-. ..+..+|.|+|.....+. .+.+.|.|||. +++.
T Consensus 111 ~~~~~~~~Lf~l~n~~~------------~~g~~ilits~~~p~~l~---------~~~~~L~SRl~~gl~~~------- 162 (234)
T PRK05642 111 GKADWEEALFHLFNRLR------------DSGRRLLLAASKSPRELP---------IKLPDLKSRLTLALVFQ------- 162 (234)
T ss_pred CChHHHHHHHHHHHHHH------------hcCCEEEEeCCCCHHHcC---------ccCccHHHHHhcCeeee-------
Confidence 344566766664210 112234555553322220 34688999984 4432
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYIS-AARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
+.+.+.+...+++. .+....-.+++++.++|... .+.++|.
T Consensus 163 -----------------------l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~---------------~~~d~r~ 204 (234)
T PRK05642 163 -----------------------MRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTR---------------GTRSMSA 204 (234)
T ss_pred -----------------------cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---------------cCCCHHH
Confidence 23344444555554 33333346899999999984 6899999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+++++..... +.+.....||..-+++++.
T Consensus 205 l~~~l~~l~~-~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 205 LFDLLERLDQ-ASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHH-HHHHcCCcCCHHHHHHHhc
Confidence 9999986654 4444445689888887763
No 199
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.77 E-value=1.3e-07 Score=105.92 Aligned_cols=189 Identities=19% Similarity=0.271 Sum_probs=110.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC------ceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR------GVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
.++|+|++|+|||+|+.+++..+.. ..|....... ..+..+. ++.....+. -...+-.+|+||||+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-~el~~al-~~~~~~~f~-----~~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-NEFINSI-RDGKGDSFR-----RRYREMDILLVDDIQF 388 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHHH-HhccHHHHH-----HHhhcCCEEEEehhcc
Confidence 4999999999999999999987521 1222211000 0000000 000000000 0012346899999998
Q ss_pred CChH--HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccce--EEEeccCC
Q 005024 445 MDES--DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDL--LWLILDRA 520 (718)
Q Consensus 445 ~~~~--~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdl--i~~~~d~~ 520 (718)
+... .+..|+..++.-. ..+..+|.|+|.....+ -.+.+.|.|||.- ++-+ ..|
T Consensus 389 l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~eL---------~~l~~rL~SRf~~GLvv~I-~~P 446 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPKQL---------VTLEDRLRNRFEWGLITDV-QPP 446 (617)
T ss_pred ccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChHhh---------hhccHHHHhhhhcCceEEc-CCC
Confidence 8543 3566666665321 11234666777553222 1478899999953 3322 333
Q ss_pred ChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCH
Q 005024 521 DMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA-ARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTV 599 (718)
Q Consensus 521 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~ 599 (718)
+. +....++.. +......+++++.++|... ...++
T Consensus 447 D~-----------------------------EtR~aIL~kka~~r~l~l~~eVi~yLa~r---------------~~rnv 482 (617)
T PRK14086 447 EL-----------------------------ETRIAILRKKAVQEQLNAPPEVLEFIASR---------------ISRNI 482 (617)
T ss_pred CH-----------------------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHh---------------ccCCH
Confidence 33 333333332 2233457899999999884 56789
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 600 RTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 600 R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
|+|+.++....+.|.+.. ..|+.+.++++++-+
T Consensus 483 R~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~ 515 (617)
T PRK14086 483 RELEGALIRVTAFASLNR-QPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHh
Confidence 999999987777777755 458888888887654
No 200
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=8.2e-08 Score=103.01 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=85.8
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCC----cee----------ec
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPR----GVY----------TT 400 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~----~~~----------~~ 400 (718)
.+|+||+.+++.+..++..|... | +||+||+|+||+++|.++++.+-- ..- .+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~------------HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~ 86 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLH------------HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID 86 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCC------------ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC
Confidence 47999999999999999888533 5 899999999999999999987611 000 01
Q ss_pred CCCCC--------CCcceeeEeecc-ccc-----ceeeec-------ceEe--eecCCeeeecccccCChHHHHHHHHhh
Q 005024 401 GRGSS--------GVGLTAAVQRDN-VTN-----EMVLEG-------GALV--LADMGICAIDEFDKMDESDRTAIHEVM 457 (718)
Q Consensus 401 ~~~~~--------~~~l~~~~~~~~-~~g-----~~~~~~-------g~l~--~a~~gil~iDEi~~~~~~~~~~L~~~m 457 (718)
|...+ ..++. .+.... ..+ ...++. -.+. .+...|++|||++.|+...+++|+..+
T Consensus 87 ~~c~~c~~i~~~~HPDl~-~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L 165 (365)
T PRK07471 87 PDHPVARRIAAGAHGGLL-TLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL 165 (365)
T ss_pred CCChHHHHHHccCCCCeE-EEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH
Confidence 11000 00000 000000 000 000000 0011 122349999999999999999999999
Q ss_pred cccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEE
Q 005024 458 EQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLW 514 (718)
Q Consensus 458 e~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~ 514 (718)
|+. +.++.+|.+++... .+.+.+.||+..+.
T Consensus 166 Eep-------------p~~~~~IL~t~~~~-------------~llpti~SRc~~i~ 196 (365)
T PRK07471 166 EEP-------------PARSLFLLVSHAPA-------------RLLPTIRSRCRKLR 196 (365)
T ss_pred hcC-------------CCCeEEEEEECCch-------------hchHHhhccceEEE
Confidence 863 23444555555443 57788999995553
No 201
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=7.5e-09 Score=102.29 Aligned_cols=191 Identities=20% Similarity=0.258 Sum_probs=110.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccce-eeecceEeee---cCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEM-VLEGGALVLA---DMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~g~l~~a---~~gil~iDEi~~~~ 446 (718)
.|+|+|+||||||.||+++|+.....+.. ..++..-..+.|+- .+..-.+..| ...|+||||||.+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlR---------vvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiG 291 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLR---------VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIG 291 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhh---------hhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhc
Confidence 69999999999999999999875322111 11111111111100 0000011111 24699999999873
Q ss_pred -----------hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceE
Q 005024 447 -----------ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLL 513 (718)
Q Consensus 447 -----------~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli 513 (718)
.+.|..+++.+.|-. |... ..++-||.|+|... .|+++|++ |.|--
T Consensus 292 tKRyds~SggerEiQrtmLELLNQld------GFds--rgDvKvimATnrie-------------~LDPaLiRPGrIDrK 350 (440)
T KOG0726|consen 292 TKRYDSNSGGEREIQRTMLELLNQLD------GFDS--RGDVKVIMATNRIE-------------TLDPALIRPGRIDRK 350 (440)
T ss_pred cccccCCCccHHHHHHHHHHHHHhcc------Cccc--cCCeEEEEeccccc-------------ccCHhhcCCCccccc
Confidence 235677888887521 2221 34788999999987 79999987 77755
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHhhHhhhhcC
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPREL--EEYIAAAYSNIRQEEAKSN 591 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~--~~~l~~~y~~lr~~~~~~~ 591 (718)
+.+ ..||... .++|+.+|..... +++++ .+++..
T Consensus 351 Ief-~~pDe~T----kkkIf~IHTs~Mt--------------------------l~~dVnle~li~~------------- 386 (440)
T KOG0726|consen 351 IEF-PLPDEKT----KKKIFQIHTSRMT--------------------------LAEDVNLEELIMT------------- 386 (440)
T ss_pred ccc-CCCchhh----hceeEEEeecccc--------------------------hhccccHHHHhhc-------------
Confidence 432 4554433 3456666532211 11111 111111
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhc
Q 005024 592 TPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSK 637 (718)
Q Consensus 592 ~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~ 637 (718)
.-..|...+..+.--|..+|-.+-+..|+.+|+..|..-+..++
T Consensus 387 --kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 387 --KDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred --ccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 12234445666666677777666777899999999988766554
No 202
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.75 E-value=2.8e-08 Score=109.39 Aligned_cols=190 Identities=20% Similarity=0.254 Sum_probs=108.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC------ceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR------GVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
+++|+|+||+|||+|++++++.+.. .+|........ .+..+. +......+. . ......+++|||++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~~---~--~~~~~dlLiiDDi~~ 210 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNAL-RNNKMEEFK---E--KYRSVDLLLIDDIQF 210 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHH-HcCCHHHHH---H--HHHhCCEEEEehhhh
Confidence 6899999999999999999987521 12221100000 000000 000000000 0 011346999999998
Q ss_pred CChH--HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccce-EEEeccCCC
Q 005024 445 MDES--DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDL-LWLILDRAD 521 (718)
Q Consensus 445 ~~~~--~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdl-i~~~~d~~~ 521 (718)
+... .+..|+..++.-. .....+|.|+|...... -.+.+.+.|||.- ..+....|+
T Consensus 211 l~~~~~~~~~l~~~~n~~~------------~~~~~iiits~~~p~~l---------~~l~~~l~SRl~~g~~v~i~~pd 269 (405)
T TIGR00362 211 LAGKERTQEEFFHTFNALH------------ENGKQIVLTSDRPPKEL---------PGLEERLRSRFEWGLVVDIEPPD 269 (405)
T ss_pred hcCCHHHHHHHHHHHHHHH------------HCCCCEEEecCCCHHHH---------hhhhhhhhhhccCCeEEEeCCCC
Confidence 7543 4555665554210 01123445555332111 1467889999963 222224444
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAA-RRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVR 600 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R 600 (718)
.+. ...++... ......+++++.++|... +..++|
T Consensus 270 ~~~-----------------------------r~~il~~~~~~~~~~l~~e~l~~ia~~---------------~~~~~r 305 (405)
T TIGR00362 270 LET-----------------------------RLAILQKKAEEEGLELPDEVLEFIAKN---------------IRSNVR 305 (405)
T ss_pred HHH-----------------------------HHHHHHHHHHHcCCCCCHHHHHHHHHh---------------cCCCHH
Confidence 433 33333332 223457899999999874 678999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 601 TLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 601 ~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
.|+.++....+.|...+ ..||.+.+.+++...
T Consensus 306 ~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 306 ELEGALNRLLAYASLTG-KPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 99999988888887755 459999999888643
No 203
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.74 E-value=3.9e-08 Score=108.69 Aligned_cols=194 Identities=14% Similarity=0.174 Sum_probs=113.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC------ceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR------GVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
+++|+|++|+|||+|+++++..+.. .+|.+...... .+..+ .... .+. ++.-.-...+..+++|||++.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~-l~~~-~~~--~~~~~~~~~~~dvLiIDDiq~ 217 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDI-LQKT-HKE--IEQFKNEICQNDVLIIDDVQF 217 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHH-HHHh-hhH--HHHHHHHhccCCEEEEecccc
Confidence 6999999999999999999885421 12221110000 00000 0000 000 000000012346999999998
Q ss_pred CC--hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCCh
Q 005024 445 MD--ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADM 522 (718)
Q Consensus 445 ~~--~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~ 522 (718)
+. +..+..|+..+.... ..+-.+|.|+|...... -.+.+.|.|||.--.+
T Consensus 218 l~~k~~~~e~lf~l~N~~~------------~~~k~iIltsd~~P~~l---------~~l~~rL~SR~~~Gl~------- 269 (450)
T PRK14087 218 LSYKEKTNEIFFTIFNNFI------------ENDKQLFFSSDKSPELL---------NGFDNRLITRFNMGLS------- 269 (450)
T ss_pred ccCCHHHHHHHHHHHHHHH------------HcCCcEEEECCCCHHHH---------hhccHHHHHHHhCCce-------
Confidence 86 455666666654321 01113566666442111 1578899999952111
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhc-C--CCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRL-S--PCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTV 599 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~--p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~ 599 (718)
..+.+++.+...+++....+. . ..+++++.++|... ..+++
T Consensus 270 ---------------------~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~---------------~~gd~ 313 (450)
T PRK14087 270 ---------------------IAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNY---------------YSDDV 313 (450)
T ss_pred ---------------------eccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHc---------------cCCCH
Confidence 124555666666666554332 1 26999999999984 68999
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 005024 600 RTLLSILRISAALARLRF-SETVAQSDVDEALRLM 633 (718)
Q Consensus 600 R~l~~lirla~a~A~l~~-~~~V~~~dv~~ai~l~ 633 (718)
|.|++++......|.... ...|+.+.+.+++.-+
T Consensus 314 R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 314 RKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 999999976666666553 2579999999988754
No 204
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.73 E-value=4.6e-08 Score=108.08 Aligned_cols=191 Identities=16% Similarity=0.176 Sum_probs=105.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC------CceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP------RGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
+++|+||||+|||+|++++++.+. +..|.+..... ..+..+..... ...+. . .......+++|||++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~-~~~~~~~~~~~-~~~f~--~--~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDSMKEGK-LNEFR--E--KYRKKVDVLLIDDVQF 205 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHHHhccc-HHHHH--H--HHHhcCCEEEEechhh
Confidence 699999999999999999998752 11232211000 00000000000 00000 0 0001346999999997
Q ss_pred CCh--HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEE-EeccCCC
Q 005024 445 MDE--SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLW-LILDRAD 521 (718)
Q Consensus 445 ~~~--~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~-~~~d~~~ 521 (718)
+.. ..+..|...+..-. .....+|.|+|.....+ -.+.+.+.|||..-. +-.+.|+
T Consensus 206 l~~~~~~q~elf~~~n~l~------------~~~k~iIitsd~~p~~l---------~~l~~rL~SR~~~gl~v~i~~pd 264 (440)
T PRK14088 206 LIGKTGVQTELFHTFNELH------------DSGKQIVICSDREPQKL---------SEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_pred hcCcHHHHHHHHHHHHHHH------------HcCCeEEEECCCCHHHH---------HHHHHHHhhHHhcCceEeeCCCC
Confidence 742 23555555543210 00113444454221111 146678999995221 1124444
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVR 600 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R 600 (718)
.+ ....++.... ...-.+++++.++|.+. ..+++|
T Consensus 265 ~e-----------------------------~r~~IL~~~~~~~~~~l~~ev~~~Ia~~---------------~~~~~R 300 (440)
T PRK14088 265 EE-----------------------------TRKKIARKMLEIEHGELPEEVLNFVAEN---------------VDDNLR 300 (440)
T ss_pred HH-----------------------------HHHHHHHHHHHhcCCCCCHHHHHHHHhc---------------cccCHH
Confidence 33 3333333222 22346899999999884 578999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 601 TLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 601 ~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
+|+.++....+.|.+.+ ..+|.+.+.+++.-+
T Consensus 301 ~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~ 332 (440)
T PRK14088 301 RLRGAIIKLLVYKETTG-EEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 99999987777787765 458888888888754
No 205
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.72 E-value=1.8e-07 Score=91.50 Aligned_cols=86 Identities=21% Similarity=0.351 Sum_probs=63.7
Q ss_pred ecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc
Q 005024 432 ADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD 511 (718)
Q Consensus 432 a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd 511 (718)
+...+++|||+++|+++.++.|+..||+. +..+.+|.++|... .+.+++.+|+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~-------------~l~~~i~sr~~ 148 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPSPE-------------KLLPTIRSRCQ 148 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChH-------------hChHHHHhhcE
Confidence 34569999999999999999999999852 23455666665332 68899999994
Q ss_pred eEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005024 512 LLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAA 579 (718)
Q Consensus 512 li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~ 579 (718)
.+ .+.+++.+++.+++... .+++++.+.+...
T Consensus 149 ~~-------------------------------~~~~~~~~~~~~~l~~~-----gi~~~~~~~i~~~ 180 (188)
T TIGR00678 149 VL-------------------------------PFPPLSEEALLQWLIRQ-----GISEEAAELLLAL 180 (188)
T ss_pred Ee-------------------------------eCCCCCHHHHHHHHHHc-----CCCHHHHHHHHHH
Confidence 33 25667777887777654 3788888888775
No 206
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=3.3e-07 Score=97.22 Aligned_cols=135 Identities=17% Similarity=0.240 Sum_probs=84.2
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCcccccccee-eecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHI-CLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~v-Ll~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (718)
.+|+||+.++..+..++..|..+ |. ||+||+|+||+++|+.+++.+-... ..+..+ ++..-..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~------------ha~Lf~G~~G~Gk~~la~~~a~~l~c~~-~~~~h~---D~~~~~~ 67 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFS------------HAHIIVGEDGIGKSLLAKEIALKILGKS-QQREYV---DIIEFKP 67 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC------------ceEEeECCCCCCHHHHHHHHHHHHcCCC-CCCCCC---CeEEecc
Confidence 47889999999999999877533 44 8999999999999999998752100 000000 0100000
Q ss_pred --ecccc-cce--e---eecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 415 --RDNVT-NEM--V---LEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 415 --~~~~~-g~~--~---~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
....+ ... . +...+ ..+...|++||+.++|+.+.+++|+..||+- |..+.+|-+++..
T Consensus 68 ~~~~~i~v~~ir~~~~~~~~~p-~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-------------p~~t~~il~~~~~ 133 (313)
T PRK05564 68 INKKSIGVDDIRNIIEEVNKKP-YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-------------PKGVFIILLCENL 133 (313)
T ss_pred ccCCCCCHHHHHHHHHHHhcCc-ccCCceEEEEechhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCCh
Confidence 00000 000 0 00011 2345679999999999999999999999962 3344444444322
Q ss_pred CCCCCCCCCcchhcCCChhhhcccceE
Q 005024 487 WGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 487 ~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
. .+.+++.||+-.+
T Consensus 134 ~-------------~ll~TI~SRc~~~ 147 (313)
T PRK05564 134 E-------------QILDTIKSRCQIY 147 (313)
T ss_pred H-------------hCcHHHHhhceee
Confidence 2 6889999999543
No 207
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=6e-07 Score=94.56 Aligned_cols=139 Identities=14% Similarity=0.160 Sum_probs=85.7
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCC-------CCCc
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS-------SGVG 408 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~-------~~~~ 408 (718)
.+|+||+.++..+..++..|... . ..||+||+|+||+.+|.++++.+--.. .+|... ...+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~---h--------a~Lf~G~~G~Gk~~~A~~~a~~llc~~-~c~~c~~~~~~~~~hPD 71 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIA---P--------AYLFAGPEGVGRKLAALCFIEGLLSQG-SPSKNIRRRLEEGNHPD 71 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCC---c--------eEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCcHhcccccCCCCC
Confidence 57899999999999999877421 1 799999999999999999988762110 111100 0000
Q ss_pred ceee-Ee---ec-c-------ccc-------ceee---e------cceEeeecCCeeeecccccCChHHHHHHHHhhccc
Q 005024 409 LTAA-VQ---RD-N-------VTN-------EMVL---E------GGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQ 460 (718)
Q Consensus 409 l~~~-~~---~~-~-------~~g-------~~~~---~------~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~ 460 (718)
+... .. .+ . ..| .... + .-.-..+...|++||+.++|+....++|+..||+-
T Consensus 72 l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP 151 (314)
T PRK07399 72 LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP 151 (314)
T ss_pred EEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC
Confidence 0000 00 00 0 000 0000 0 00011245679999999999999999999999962
Q ss_pred EEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 461 TVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 461 ~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
| ++.+|-.++... .+.+++.||+-.+
T Consensus 152 -------------p-~~~fILi~~~~~-------------~Ll~TI~SRcq~i 177 (314)
T PRK07399 152 -------------G-NGTLILIAPSPE-------------SLLPTIVSRCQII 177 (314)
T ss_pred -------------C-CCeEEEEECChH-------------hCcHHHHhhceEE
Confidence 2 344444444333 7999999999444
No 208
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.68 E-value=4e-07 Score=94.55 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=117.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC-ceeecCCCC---CCCcceeeE---eecccccce------eeec---ceEeeecC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR-GVYTTGRGS---SGVGLTAAV---QRDNVTNEM------VLEG---GALVLADM 434 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~-~~~~~~~~~---~~~~l~~~~---~~~~~~g~~------~~~~---g~l~~a~~ 434 (718)
.++|+||+|+|||++++.++..++. .+....... +...+...+ ...+..+.. .+.. ........
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999988753 222111111 000000000 000000100 0000 00011234
Q ss_pred CeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCC-CCCCCCCcchhcCCChhhhcccceE
Q 005024 435 GICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWG-RYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 435 gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g-~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
.+++|||++.+++.....|....+-.. . + ...+.|+.+..|... .... .-..++.+|+...
T Consensus 125 ~vliiDe~~~l~~~~~~~l~~l~~~~~---~--~-----~~~~~vvl~g~~~~~~~l~~--------~~~~~l~~r~~~~ 186 (269)
T TIGR03015 125 ALLVVDEAQNLTPELLEELRMLSNFQT---D--N-----AKLLQIFLVGQPEFRETLQS--------PQLQQLRQRIIAS 186 (269)
T ss_pred eEEEEECcccCCHHHHHHHHHHhCccc---C--C-----CCeEEEEEcCCHHHHHHHcC--------chhHHHHhheeee
Confidence 589999999999877776654443210 0 0 123445555555411 0000 0112445555322
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-c----CCCCCHHHHHHHHHHHHHhhHhhh
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-L----SPCVPRELEEYIAAAYSNIRQEEA 588 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~----~p~ls~~~~~~l~~~y~~lr~~~~ 588 (718)
+ .+++++.++++.|+...-. . .+.+++++.+.|.+.
T Consensus 187 ~------------------------------~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~--------- 227 (269)
T TIGR03015 187 C------------------------------HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRF--------- 227 (269)
T ss_pred e------------------------------eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH---------
Confidence 2 3567888888888875432 1 235899999999885
Q ss_pred hcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Q 005024 589 KSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQ 634 (718)
Q Consensus 589 ~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~ 634 (718)
..|.+|.+..+...+...|..++.+.|+.++|..|+.-+.
T Consensus 228 ------s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 228 ------SRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred ------cCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 5788999999999999998888999999999999987653
No 209
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.6e-08 Score=93.70 Aligned_cols=190 Identities=21% Similarity=0.244 Sum_probs=108.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceeeEeecccccceeeecceEeee---cCCeeeecccccC-
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLA---DMGICAIDEFDKM- 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a---~~gil~iDEi~~~- 445 (718)
.+||+||||||||.+|++++....-.+.. +|. +|...... .|.. ...-.+++| ...|+|.||||.+
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firvsgs-----elvqk~ig---egsr-mvrelfvmarehapsiifmdeidsig 253 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS-----ELVQKYIG---EGSR-MVRELFVMAREHAPSIIFMDEIDSIG 253 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEechH-----HHHHHHhh---hhHH-HHHHHHHHHHhcCCceEeeecccccc
Confidence 69999999999999999999886433322 111 11111000 1111 111122333 2579999999987
Q ss_pred ----------ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceE
Q 005024 446 ----------DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLL 513 (718)
Q Consensus 446 ----------~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli 513 (718)
+.+.|..+++.+.|-. |... ..++-+|.|+|... -+++|||+ |.|--
T Consensus 254 s~r~e~~~ggdsevqrtmlellnqld------gfea--tknikvimatnrid-------------ild~allrpgridrk 312 (404)
T KOG0728|consen 254 SSRVESGSGGDSEVQRTMLELLNQLD------GFEA--TKNIKVIMATNRID-------------ILDPALLRPGRIDRK 312 (404)
T ss_pred cccccCCCCccHHHHHHHHHHHHhcc------cccc--ccceEEEEeccccc-------------cccHhhcCCCccccc
Confidence 3456778888887521 3322 23678999999875 57888887 66654
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCC
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTP 593 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~ 593 (718)
+-+ ++|+.+.... |+.+|.... .....++ .+.+.+-
T Consensus 313 ief-p~p~e~ar~~----ilkihsrkm----------------------nl~rgi~---l~kiaek-------------- 348 (404)
T KOG0728|consen 313 IEF-PPPNEEARLD----ILKIHSRKM----------------------NLTRGIN---LRKIAEK-------------- 348 (404)
T ss_pred ccC-CCCCHHHHHH----HHHHhhhhh----------------------chhcccC---HHHHHHh--------------
Confidence 322 3444333322 233331100 0000111 1112211
Q ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Q 005024 594 HSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQ 634 (718)
Q Consensus 594 ~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~ 634 (718)
-...|..++.++.--|.-.|--+-+-.||.+|++-|+.-+.
T Consensus 349 m~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 349 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred CCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHH
Confidence 12344556777777777788666677899999999987553
No 210
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.64 E-value=4.3e-07 Score=89.85 Aligned_cols=165 Identities=21% Similarity=0.245 Sum_probs=89.5
Q ss_pred cccccHHHHHHHH---HHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE
Q 005024 337 EIYGHEDIKKALL---LLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV 413 (718)
Q Consensus 337 ~i~g~~~~k~~i~---~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~ 413 (718)
+++|.+.-|..|. .+.+.|. +.+ |+||.|+.|||||++++++....... ||-...
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~---pan--------nvLL~G~rGtGKSSlVkall~~y~~~-----------GLRlIe 85 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGL---PAN--------NVLLWGARGTGKSSLVKALLNEYADQ-----------GLRLIE 85 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCC---CCc--------ceEEecCCCCCHHHHHHHHHHHHhhc-----------CceEEE
Confidence 5667777777766 3444453 122 99999999999999999998775221 111110
Q ss_pred e-ecccccceeeecceEeeecCCeeeeccccc-CChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC---CC
Q 005024 414 Q-RDNVTNEMVLEGGALVLADMGICAIDEFDK-MDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA---WG 488 (718)
Q Consensus 414 ~-~~~~~g~~~~~~g~l~~a~~gil~iDEi~~-~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~---~g 488 (718)
+ ++....-..+-.-.-.....=|+|+|++.= ..+..-..|-.+|| |.....|.++.+.||+|.. ..
T Consensus 86 v~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~Le---------Ggle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 86 VSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLE---------GGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred ECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhc---------CccccCCCcEEEEEecchhhccch
Confidence 0 110000000000000011234899999752 23334566777777 5566779999999999977 22
Q ss_pred CCCCCCC-------cchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhh
Q 005024 489 RYDLRRT-------PAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 489 ~~~~~~~-------~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
.+....+ ..+.++=.-+|-+||.|.+-+ -.|+.+.=.+|+++.+
T Consensus 157 ~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F-~~~~q~~YL~IV~~~~ 207 (249)
T PF05673_consen 157 SFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSF-YPPDQEEYLAIVRHYA 207 (249)
T ss_pred hhhhccCCCccccCcchHHHHHHhHHHhCCcEEEe-cCCCHHHHHHHHHHHH
Confidence 2222211 111112223667799887654 4444444444444433
No 211
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.8e-08 Score=98.97 Aligned_cols=131 Identities=21% Similarity=0.311 Sum_probs=77.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEee----------ecCC---ee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVL----------ADMG---IC 437 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~----------a~~g---il 437 (718)
=|||.||||||||+|.+++|+.+... +.+...- +....+.-...-..|.-+.|.++. .+.| .+
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y~~--~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIR--TNDRYYK--GQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheee--ecCcccc--ceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 48999999999999999999987432 1111111 110000000001123333333221 1222 57
Q ss_pred eecccccCChH---------------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCC
Q 005024 438 AIDEFDKMDES---------------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINL 502 (718)
Q Consensus 438 ~iDEi~~~~~~---------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l 502 (718)
+|||++.+... ..++|+.-|++= +-..++.++||+|-.. .+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl-----------K~~~NvliL~TSNl~~-------------si 310 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL-----------KRYPNVLILATSNLTD-------------SI 310 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh-----------ccCCCEEEEeccchHH-------------HH
Confidence 89999876321 124555555421 1235789999999876 79
Q ss_pred ChhhhcccceEEEeccCCChhHHHHHHh
Q 005024 503 PPALLSRFDLLWLILDRADMDSDLEMAR 530 (718)
Q Consensus 503 ~~~ll~Rfdli~~~~d~~~~~~d~~i~~ 530 (718)
+.|+.||-|..+.+ .+|.......|.+
T Consensus 311 D~AfVDRADi~~yV-G~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 311 DVAFVDRADIVFYV-GPPTAEAIYEILK 337 (423)
T ss_pred HHHhhhHhhheeec-CCccHHHHHHHHH
Confidence 99999999998875 7777666555533
No 212
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.5e-08 Score=102.39 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=85.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh---
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE--- 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~--- 447 (718)
.-||+||||||||+++-|+|+.+.-.+|.-.. +.+++ +. .+..-.+...+..|++|.+||..-.
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL---------t~v~~--n~--dLr~LL~~t~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL---------TEVKL--DS--DLRHLLLATPNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEeee---------ccccC--cH--HHHHHHHhCCCCcEEEEeeccccccccc
Confidence 47999999999999999999999877764211 11111 11 1222233344677999999986511
Q ss_pred ---------------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--cc
Q 005024 448 ---------------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RF 510 (718)
Q Consensus 448 ---------------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rf 510 (718)
-..+.|+.+++ |.+..--..-.||.|||-.+ .|+|||++ |.
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiD---------GlwSscg~ERIivFTTNh~E-------------kLDPALlRpGRm 361 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLD---------GLWSSCGDERIIVFTTNHKE-------------KLDPALLRPGRM 361 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhc---------cccccCCCceEEEEecCChh-------------hcCHhhcCCCcc
Confidence 01123444433 44444333446788999887 89999999 99
Q ss_pred ceEEEeccCCChhHHHHHHhhhhhh
Q 005024 511 DLLWLILDRADMDSDLEMARHVVYV 535 (718)
Q Consensus 511 dli~~~~d~~~~~~d~~i~~~il~~ 535 (718)
|+...+ ++.....-+.++.+.+..
T Consensus 362 DmhI~m-gyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 362 DMHIYM-GYCTFEAFKTLASNYLGI 385 (457)
T ss_pred eeEEEc-CCCCHHHHHHHHHHhcCC
Confidence 998765 777777777777766543
No 213
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5.4e-08 Score=95.09 Aligned_cols=189 Identities=21% Similarity=0.262 Sum_probs=105.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceeeEeecccccceeeecceEeee---cCCeeeecccccC-
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLA---DMGICAIDEFDKM- 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a---~~gil~iDEi~~~- 445 (718)
.||++||||||||.+||++|+.....+.. .|. +|....+. .|.... .-.+.+| ...++|+||||.+
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigs-----elvqkyvg---egarmv-relf~martkkaciiffdeidaig 283 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGS-----ELVQKYVG---EGARMV-RELFEMARTKKACIIFFDEIDAIG 283 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhH-----HHHHHHhh---hhHHHH-HHHHHHhcccceEEEEeecccccc
Confidence 59999999999999999999875433221 111 11100000 111110 0111122 2248999999976
Q ss_pred ----------ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceE
Q 005024 446 ----------DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLL 513 (718)
Q Consensus 446 ----------~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli 513 (718)
+.+.|..+++.+.|-. |. .-.-++-|+.|+|.+. .|+++|++ |.|--
T Consensus 284 garfddg~ggdnevqrtmleli~qld------gf--dprgnikvlmatnrpd-------------tldpallrpgrldrk 342 (435)
T KOG0729|consen 284 GARFDDGAGGDNEVQRTMLELINQLD------GF--DPRGNIKVLMATNRPD-------------TLDPALLRPGRLDRK 342 (435)
T ss_pred CccccCCCCCcHHHHHHHHHHHHhcc------CC--CCCCCeEEEeecCCCC-------------CcCHhhcCCcccccc
Confidence 3456778888886522 11 1123567899999886 78888887 66644
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHhhHhhhhcCC
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPREL-EEYIAAAYSNIRQEEAKSNT 592 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~-~~~l~~~y~~lr~~~~~~~~ 592 (718)
+-+ ..||.+-. .||+.+|...... ..+. .++|..++
T Consensus 343 vef-~lpdlegr----t~i~kihaksmsv--------------------------erdir~ellarlc------------ 379 (435)
T KOG0729|consen 343 VEF-GLPDLEGR----THIFKIHAKSMSV--------------------------ERDIRFELLARLC------------ 379 (435)
T ss_pred eec-cCCccccc----ceeEEEecccccc--------------------------ccchhHHHHHhhC------------
Confidence 322 44554333 2555555322111 1111 12233321
Q ss_pred CCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Q 005024 593 PHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQ 634 (718)
Q Consensus 593 ~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~ 634 (718)
-..+.-++.++.--|.-.|--.-+..+|+.|+.+|+.-+-
T Consensus 380 --pnstgaeirsvcteagmfairarrk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 380 --PNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVV 419 (435)
T ss_pred --CCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 1223345666666666666555678899999999987654
No 214
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.6e-07 Score=108.62 Aligned_cols=147 Identities=15% Similarity=0.226 Sum_probs=99.5
Q ss_pred HHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccc-cccceeeecCCCcchHHHHHHHHHHHCCCc---eeecC
Q 005024 326 IYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKI-RGDLHICLMGDPGVAKSQLLKHIINVAPRG---VYTTG 401 (718)
Q Consensus 326 ~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~-r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~~~~~ 401 (718)
.+-.+.+.|-..|+||+++..||..++..... |..- .+++-+||.||+|+|||.||+++|..+--+ ....+
T Consensus 552 ~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~-----gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD 626 (898)
T KOG1051|consen 552 RLKKLEERLHERVIGQDEAVAAIAAAIRRSRA-----GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD 626 (898)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhhhc-----ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec
Confidence 45567788888999999999999988865431 2222 367789999999999999999999987211 11111
Q ss_pred CCC---------CCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEE
Q 005024 402 RGS---------SGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTS 472 (718)
Q Consensus 402 ~~~---------~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~ 472 (718)
... +..|+.+....+..+ .++......|+++|||+++.++.++.|+++|+.|.++-. .|....
T Consensus 627 mse~~evskligsp~gyvG~e~gg~Lt-------eavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs-~Gr~Vd 698 (898)
T KOG1051|consen 627 MSEFQEVSKLIGSPPGYVGKEEGGQLT-------EAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDS-HGREVD 698 (898)
T ss_pred hhhhhhhhhccCCCcccccchhHHHHH-------HHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccC-CCcEee
Confidence 110 001111110000011 122233456999999999999999999999999999875 344444
Q ss_pred ecCceEEEEEeCCC
Q 005024 473 LNARTAVLSAANPA 486 (718)
Q Consensus 473 l~~~~~viaa~Np~ 486 (718)
+ .++.||.|+|-.
T Consensus 699 ~-kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 699 F-KNAIFIMTSNVG 711 (898)
T ss_pred c-cceEEEEecccc
Confidence 4 389999999965
No 215
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=6.8e-07 Score=95.22 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=85.0
Q ss_pred cccc-cHHHHHHHHHHHhCCccccCCCCcccccccee-eecCCCcchHHHHHHHHHHHCCC----ceeecCCCCCCC---
Q 005024 337 EIYG-HEDIKKALLLLLVGAPHRKLKDGMKIRGDLHI-CLMGDPGVAKSQLLKHIINVAPR----GVYTTGRGSSGV--- 407 (718)
Q Consensus 337 ~i~g-~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~v-Ll~G~pGtGKt~la~~i~~~~~~----~~~~~~~~~~~~--- 407 (718)
.|.| |+.+++.+..++..|... |. ||+||+|+||+++|+.+++.+-- ....||...+-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~------------ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLS------------HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCC------------ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHh
Confidence 4566 888988888888777533 55 99999999999999999888621 111122110000
Q ss_pred -cce-eeEeeccccccee----------eecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 408 -GLT-AAVQRDNVTNEMV----------LEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 408 -~l~-~~~~~~~~~g~~~----------~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
+-. .-..-.+...... +.... ..+...|++|||+++|+.+.+++|+..||+- |.
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-------------p~ 139 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTASAANSLLKFLEEP-------------SG 139 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHHHHHHHHHHhcCC-------------CC
Confidence 000 0000000000000 00011 2345679999999999999999999999962 34
Q ss_pred ceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 476 RTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 476 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
++.+|.+++... .+.+++.||+-.+
T Consensus 140 ~~~~Il~t~~~~-------------~ll~TIrSRc~~i 164 (329)
T PRK08058 140 GTTAILLTENKH-------------QILPTILSRCQVV 164 (329)
T ss_pred CceEEEEeCChH-------------hCcHHHHhhceee
Confidence 555665665333 7899999999444
No 216
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.56 E-value=6.8e-08 Score=89.41 Aligned_cols=109 Identities=17% Similarity=0.295 Sum_probs=72.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce--eecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV--YTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES 448 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~ 448 (718)
+|||+|+|||||+.+|++++....+.. +..... ..+ . ...+..+.+|+++|+|++.++++
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~---~~~---------~------~~~l~~a~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDC---ASL---------P------AELLEQAKGGTLYLKNIDRLSPE 84 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCH---HCT---------C------HHHHHHCTTSEEEEECGCCS-HH
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEech---hhC---------c------HHHHHHcCCCEEEECChHHCCHH
Confidence 899999999999999999999875421 100000 000 0 11122357899999999999999
Q ss_pred HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEE
Q 005024 449 DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWL 515 (718)
Q Consensus 449 ~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~ 515 (718)
.|..|.++++... ..++++|+++..... .+.++-.+.+.|+.|++-..+
T Consensus 85 ~Q~~L~~~l~~~~------------~~~~RlI~ss~~~l~------~l~~~~~~~~~L~~~l~~~~i 133 (138)
T PF14532_consen 85 AQRRLLDLLKRQE------------RSNVRLIASSSQDLE------ELVEEGRFSPDLYYRLSQLEI 133 (138)
T ss_dssp HHHHHHHHHHHCT------------TTTSEEEEEECC-CC------CHHHHSTHHHHHHHHCSTCEE
T ss_pred HHHHHHHHHHhcC------------CCCeEEEEEeCCCHH------HHhhccchhHHHHHHhCCCEE
Confidence 9999999997521 356789999886631 122333677888888865443
No 217
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=5.3e-07 Score=102.52 Aligned_cols=242 Identities=15% Similarity=0.188 Sum_probs=121.1
Q ss_pred HHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee--c----C
Q 005024 328 NKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT--T----G 401 (718)
Q Consensus 328 ~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~--~----~ 401 (718)
++....-..++.|++.....+...+........+ +. -++|+||||+|||++++.+++.+...+.. . .
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~------~~-illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVLENAP------KR-ILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCC------Cc-EEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 3333334447888888766666665543221111 11 28999999999999999999887543211 0 0
Q ss_pred CCCCCCccee---eEeecccc-----cceeeecc-e---E---eeecCCeeeecccccCChHHHHHHHHhhcccEEEEee
Q 005024 402 RGSSGVGLTA---AVQRDNVT-----NEMVLEGG-A---L---VLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAK 466 (718)
Q Consensus 402 ~~~~~~~l~~---~~~~~~~~-----g~~~~~~g-~---l---~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k 466 (718)
.......... ..+....+ ..+...+. . + ...+.-|++||||+.+-.....+++.+|....+ .
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~---e 225 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV---S 225 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhh---c
Confidence 0000000000 00000000 00111110 0 0 012345999999976654333344444430000 0
Q ss_pred CCeEEEecCceEEEEEeCCC-CCCCCC-CCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCC
Q 005024 467 AGITTSLNARTAVLSAANPA-WGRYDL-RRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPAL 544 (718)
Q Consensus 467 ~g~~~~l~~~~~viaa~Np~-~g~~~~-~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~ 544 (718)
..++.+|+++|.. .|.-+. ...+...--+.++++++.-+.. .
T Consensus 226 -------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~-----------------------------I 269 (637)
T TIGR00602 226 -------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSN-----------------------------I 269 (637)
T ss_pred -------CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeE-----------------------------E
Confidence 1133444444432 111100 0001000114466776432221 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-----C--CC-CHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHH----HHH
Q 005024 545 GFTPLEPAILRAYISAARRLS-----P--CV-PRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRIS----AAL 612 (718)
Q Consensus 545 ~~~~~~~~~l~~~i~~~~~~~-----p--~l-s~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla----~a~ 612 (718)
.|.|++..+|++++..+.+.. + .+ ++++.+.|.. ...|++|.+.++++.+ ...
T Consensus 270 ~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~---------------~s~GDiRsAIn~LQf~~~~~g~~ 334 (637)
T TIGR00602 270 SFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ---------------GCSGDIRSAINSLQFSSSKSGSL 334 (637)
T ss_pred EeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH---------------hCCChHHHHHHHHHHHHhcCCcc
Confidence 478899999888877765421 1 12 3566666655 2689999999999987 444
Q ss_pred HHhcCCCCccHHHHHHHH
Q 005024 613 ARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 613 A~l~~~~~V~~~dv~~ai 630 (718)
|.....+.|+..|+..+.
T Consensus 335 a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 335 PIKKRMSTKSDAHASKSK 352 (637)
T ss_pred ccccccccccHHHhhhcc
Confidence 444555677777776654
No 218
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.55 E-value=1.9e-06 Score=95.43 Aligned_cols=276 Identities=18% Similarity=0.163 Sum_probs=163.0
Q ss_pred hhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC---------Cceee--c
Q 005024 332 RSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP---------RGVYT--T 400 (718)
Q Consensus 332 ~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~---------~~~~~--~ 400 (718)
+.+...+.+.+.-..-|-..+-+--.. ...|. -+.+.|-||||||++.+.+.+.+. .-.|. .
T Consensus 392 s~vp~sLpcRe~E~~~I~~f~~~~i~~-~~~g~------~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN 464 (767)
T KOG1514|consen 392 SAVPESLPCRENEFSEIEDFLRSFISD-QGLGS------CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN 464 (767)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCC-CCCce------eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc
Confidence 334446677777766666555433211 11111 488999999999999998887542 22222 2
Q ss_pred CCCCCCCcceeeEeeccccccee-----eecce--E----eeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCe
Q 005024 401 GRGSSGVGLTAAVQRDNVTNEMV-----LEGGA--L----VLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGI 469 (718)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~g~~~-----~~~g~--l----~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~ 469 (718)
|.-.....-.-..+....+|+.. ++.-. + .....-|++|||+|.|-...|..|..+.+=-
T Consensus 465 gm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp--------- 535 (767)
T KOG1514|consen 465 GLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP--------- 535 (767)
T ss_pred ceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC---------
Confidence 22111000000000011122110 00000 0 1112358999999999877788777776511
Q ss_pred EEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhh-----cccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCC
Q 005024 470 TTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALL-----SRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPAL 544 (718)
Q Consensus 470 ~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll-----~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~ 544 (718)
..-++...|||-+|.. ++|+.++ ||.++..+
T Consensus 536 -t~~~sKLvvi~IaNTm--------------dlPEr~l~nrvsSRlg~tRi----------------------------- 571 (767)
T KOG1514|consen 536 -TLKNSKLVVIAIANTM--------------DLPERLLMNRVSSRLGLTRI----------------------------- 571 (767)
T ss_pred -cCCCCceEEEEecccc--------------cCHHHHhccchhhhccceee-----------------------------
Confidence 1224678888888865 4555444 36655543
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCC------
Q 005024 545 GFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFS------ 618 (718)
Q Consensus 545 ~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~------ 618 (718)
-|.|++.++|++++...-.-.-.+..+|.+++..... ...|++|.+..+++.|..+|.-+..
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVA------------avSGDaRraldic~RA~Eia~~~~~~~k~~~ 639 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVA------------AVSGDARRALDICRRAAEIAEERNVKGKLAV 639 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHH------------hccccHHHHHHHHHHHHHHhhhhcccccccc
Confidence 3788999999999886544223578888888776432 3679999999999999999976666
Q ss_pred -CCccHHHHHHHHHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 005024 619 -ETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWISR 683 (718)
Q Consensus 619 -~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~ 683 (718)
..|+.-||.+|++-|..+...-.... .......++.+|.....+.+.....+.+|+..+..
T Consensus 640 ~q~v~~~~v~~Ai~em~~~~~~~~i~g----lS~~~k~fl~ai~~e~~~~g~~e~~~~~v~~~~~~ 701 (767)
T KOG1514|consen 640 SQLVGILHVMEAINEMLASPYIKALKG----LSFLQKIFLTAIVAETEGTGLEEATLDEVYSEVVT 701 (767)
T ss_pred cceeehHHHHHHHHHHhhhhHHHHhcc----hHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 56899999999998876644321111 11223345556666555555545666666666443
No 219
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=98.54 E-value=2.4e-06 Score=91.63 Aligned_cols=253 Identities=17% Similarity=0.176 Sum_probs=153.3
Q ss_pred ChhHHHHHHhhcCCcccccH-HHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 323 DGDIYNKLARSLAPEIYGHE-DIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 323 ~~~~~~~l~~si~p~i~g~~-~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
.++..+.|..|+.=+--+.. ..|..++.-|+--+ -.+.|++=.||.|||||.+-+ +++|.+...+|
T Consensus 171 ~eEWiD~LlrS~G~eP~~~~~r~Kl~~L~RLiPlV----------E~N~NliELgPrGTGKS~vy~---eiSp~~~liSG 237 (457)
T PF13337_consen 171 TEEWIDLLLRSIGYEPSGFSERQKLLLLARLIPLV----------ERNYNLIELGPRGTGKSYVYK---EISPYGILISG 237 (457)
T ss_pred HHHHHHHHHHhcCCCccccCHHHHHHHHHhHHHhc----------ccccceEEEcCCCCCceeehh---hcCcccEEEEC
Confidence 34556778888654333333 35555555554322 233499999999999999965 45677777777
Q ss_pred CCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC---hHHHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 402 RGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD---ESDRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~---~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
...|.+.|... ..++ ..|.+.. -.++++||+..+. ++....|...||+|.++..+ .+..+.++
T Consensus 238 G~~T~A~LFyn----~~~~----~~GlV~~--~D~VafDEv~~i~f~d~d~i~imK~YMesG~fsRG~----~~i~a~as 303 (457)
T PF13337_consen 238 GQVTVAKLFYN----MSTG----QIGLVGR--WDVVAFDEVAGIKFKDKDEIQIMKDYMESGSFSRGK----EEINADAS 303 (457)
T ss_pred CCcchHHheee----ccCC----cceeeee--ccEEEEEeccCcccCChHHHHHHHHHHhccceeecc----ccccccee
Confidence 77666555433 2222 3344432 3589999999885 45557788899999998853 36677888
Q ss_pred EEEEeCCCC--CCCCC----CCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHH
Q 005024 479 VLSAANPAW--GRYDL----RRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPA 552 (718)
Q Consensus 479 viaa~Np~~--g~~~~----~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 552 (718)
++...|... ..... -..+.+.+. +.|++|||..+..-.+.|....+.. ..-..+..+
T Consensus 304 ~vf~GNi~~~v~~~~~~~~lf~~lP~~~~-DsAflDRiH~~iPGWeiPk~~~e~~----------------t~~~gl~~D 366 (457)
T PF13337_consen 304 MVFVGNINQSVENMLKTSHLFEPLPEEMR-DSAFLDRIHGYIPGWEIPKIRPEMF----------------TNGYGLIVD 366 (457)
T ss_pred EEEEcCcCCcchhccccchhhhhcCHHHH-HHHHHhHhheeccCccccccCHHHc----------------cCCceeeHH
Confidence 888888762 11111 122223333 6899999977664444443222110 011224555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhc-CCCCccHHHHHHHHH
Q 005024 553 ILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLR-FSETVAQSDVDEALR 631 (718)
Q Consensus 553 ~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~-~~~~V~~~dv~~ai~ 631 (718)
.+..++...|+. .+ .+.+.+++ ......+.|.-.++-+++-++.+|- -...++.+|++++++
T Consensus 367 y~aE~l~~LR~~--~~----~~~~~~~~-----------~lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee~~~~l~ 429 (457)
T PF13337_consen 367 YFAEILHELRKQ--SY----SDAVDKYF-----------KLGSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEELEECLR 429 (457)
T ss_pred HHHHHHHHHHHH--HH----HHHHHhhE-----------eeCCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHH
Confidence 555555554442 01 11111111 1235688999999999888888863 346799999998887
Q ss_pred HHhhh
Q 005024 632 LMQMS 636 (718)
Q Consensus 632 l~~~~ 636 (718)
.....
T Consensus 430 ~A~e~ 434 (457)
T PF13337_consen 430 PALEM 434 (457)
T ss_pred HHHHH
Confidence 66444
No 220
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.7e-08 Score=104.78 Aligned_cols=127 Identities=22% Similarity=0.276 Sum_probs=74.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc--eeecCC--CCCCCcceeeEeecccc---cceeeecceEeeecCCeeeecccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG--VYTTGR--GSSGVGLTAAVQRDNVT---NEMVLEGGALVLADMGICAIDEFD 443 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~--~~~~~~--~~~~~~l~~~~~~~~~~---g~~~~~~g~l~~a~~gil~iDEi~ 443 (718)
.+||+||||||||.+||.|.+.+.-. -.+.|- ..-.+|-+...+|.-+. .+|....+. +.-.|+++||||
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~---SgLHIIIFDEiD 334 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGAN---SGLHIIIFDEID 334 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCcc---CCceEEEehhhH
Confidence 59999999999999999999998321 111111 00111222222222211 122211110 112489999998
Q ss_pred cC-------------ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--
Q 005024 444 KM-------------DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS-- 508 (718)
Q Consensus 444 ~~-------------~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~-- 508 (718)
.+ .+...+.|+.-|+ |. -.+ .++.||+-||... -+++|||+
T Consensus 335 AICKqRGS~~g~TGVhD~VVNQLLsKmD---------GV-eqL-NNILVIGMTNR~D-------------lIDEALLRPG 390 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDTVVNQLLSKMD---------GV-EQL-NNILVIGMTNRKD-------------LIDEALLRPG 390 (744)
T ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhcc---------cH-Hhh-hcEEEEeccCchh-------------hHHHHhcCCC
Confidence 64 2344566777775 21 122 2678999999875 68899998
Q ss_pred ccceEEEeccCCChhHH
Q 005024 509 RFDLLWLILDRADMDSD 525 (718)
Q Consensus 509 Rfdli~~~~d~~~~~~d 525 (718)
||.+..-+ ..||+.-.
T Consensus 391 RlEVqmEI-sLPDE~gR 406 (744)
T KOG0741|consen 391 RLEVQMEI-SLPDEKGR 406 (744)
T ss_pred ceEEEEEE-eCCCccCc
Confidence 99776544 56665544
No 221
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=98.51 E-value=3e-07 Score=102.38 Aligned_cols=167 Identities=15% Similarity=0.136 Sum_probs=100.4
Q ss_pred eecceEeeecCCeeeecccccCC-hHHHHHHHHhhcccEEEEeeCCe----------EEEecCceEEEEEeCCCCCCCCC
Q 005024 424 LEGGALVLADMGICAIDEFDKMD-ESDRTAIHEVMEQQTVSIAKAGI----------TTSLNARTAVLSAANPAWGRYDL 492 (718)
Q Consensus 424 ~~~g~l~~a~~gil~iDEi~~~~-~~~~~~L~~~me~~~i~i~k~g~----------~~~l~~~~~viaa~Np~~g~~~~ 492 (718)
+++|++..|+||+|+||--+-+. +.....|.++|..+.+.+...+. .-.+|.++-||...++.. |
T Consensus 323 I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~~~--y-- 398 (509)
T PF13654_consen 323 IKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDREL--Y-- 398 (509)
T ss_dssp EE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-TTH--H--
T ss_pred EcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCHHH--H--
Confidence 68899999999999999998886 45678999999999999874321 012344555555555440 0
Q ss_pred CCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-----cCCC
Q 005024 493 RRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-----LSPC 567 (718)
Q Consensus 493 ~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-----~~p~ 567 (718)
..-...++.+..-|.+..-+ ....+.+.+.+..|+.+... --+.
T Consensus 399 ----~~L~~~D~dF~~lFkv~aef---------------------------~~~~~~~~e~~~~~~~~i~~~~~~~~L~~ 447 (509)
T PF13654_consen 399 ----YLLYEYDPDFYKLFKVKAEF---------------------------DSEMPRTEENIRQYARFIASICQKEGLPP 447 (509)
T ss_dssp ----HHS-HHHHHHHHHHSEEEE-----------------------------SEEE--HHHHHHHHHHHHHHHHHHSS--
T ss_pred ----HHHHHhCHHHHhCCCEEEEc---------------------------cccCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 00002334444444333211 11223566777777776553 2467
Q ss_pred CCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 568 VPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 568 ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
++.+|...|.++...+-. .........+..+++-|...|+.++.+.|+.+||..|+..
T Consensus 448 ~~~~Av~~li~~~~R~~q-------~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 448 FDRSAVARLIEYSARLDQ-------DKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp BBHHHHHHHHHHHHHCC--------SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC-------CEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 899999999999877622 1356677789999999999999999999999999999874
No 222
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.48 E-value=7.7e-07 Score=84.62 Aligned_cols=136 Identities=19% Similarity=0.230 Sum_probs=79.8
Q ss_pred ccHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCc-ee--ecCCCCCC----Cc-ce
Q 005024 340 GHEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRG-VY--TTGRGSSG----VG-LT 410 (718)
Q Consensus 340 g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~-~~--~~~~~~~~----~~-l~ 410 (718)
||+.+++.+.-++..+... | +||+||+|+||+.+|+++++.+--. .. .++...+. .+ ..
T Consensus 1 gq~~~~~~L~~~~~~~~l~------------ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLP------------HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcCCcc------------eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 7888888888888877533 5 7999999999999999999876211 00 01110000 00 00
Q ss_pred eeEeeccccc--ceeee---------cceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 411 AAVQRDNVTN--EMVLE---------GGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 411 ~~~~~~~~~g--~~~~~---------~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
....-++... ....+ .-.-..+...|++|||+++|+.+.+++|+..||+- |.++.+
T Consensus 69 d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~~~f 135 (162)
T PF13177_consen 69 DFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-------------PENTYF 135 (162)
T ss_dssp TEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTTEEE
T ss_pred ceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCCEEE
Confidence 0000011000 00000 00001124569999999999999999999999963 456677
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
|-+++... .+.+++.||+-.+
T Consensus 136 iL~t~~~~-------------~il~TI~SRc~~i 156 (162)
T PF13177_consen 136 ILITNNPS-------------KILPTIRSRCQVI 156 (162)
T ss_dssp EEEES-GG-------------GS-HHHHTTSEEE
T ss_pred EEEECChH-------------HChHHHHhhceEE
Confidence 66666554 7999999999443
No 223
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3e-06 Score=93.47 Aligned_cols=189 Identities=23% Similarity=0.188 Sum_probs=109.3
Q ss_pred ccceeeecCCCcchHHHHHHHHHHHCCCceee-cCC--CCCCCcceeeEeecccccceeeecceEeeecCCeeeeccccc
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINVAPRGVYT-TGR--GSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
.+..+|++||||||||.+++++++...-.++. .|. .....|-+.+..|..+.. ++ ..+-+.++||||+|.
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~-----a~--k~~~psii~IdEld~ 289 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAE-----AL--KFQVPSIIFIDELDA 289 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHH-----Hh--ccCCCeeEeHHhHhh
Confidence 33479999999999999999999987533222 111 001111111111111100 00 111157999999998
Q ss_pred CCh----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc-ccceE
Q 005024 445 MDE----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS-RFDLL 513 (718)
Q Consensus 445 ~~~----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~-Rfdli 513 (718)
+-+ ...+.|+..|+. .. -...+.||+|+|.+. .|++++.+ |||--
T Consensus 290 l~p~r~~~~~~e~Rv~sqlltL~dg---------~~--~~~~vivl~atnrp~-------------sld~alRRgRfd~e 345 (693)
T KOG0730|consen 290 LCPKREGADDVESRVVSQLLTLLDG---------LK--PDAKVIVLAATNRPD-------------SLDPALRRGRFDRE 345 (693)
T ss_pred hCCcccccchHHHHHHHHHHHHHhh---------Cc--CcCcEEEEEecCCcc-------------ccChhhhcCCCcce
Confidence 864 223557777752 11 124678899999886 68999986 99865
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCC
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTP 593 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~ 593 (718)
..+ ..|+......|++.+...+ +..++.....+...
T Consensus 346 v~I-giP~~~~RldIl~~l~k~~-----------------------------~~~~~~~l~~iA~~-------------- 381 (693)
T KOG0730|consen 346 VEI-GIPGSDGRLDILRVLTKKM-----------------------------NLLSDVDLEDIAVS-------------- 381 (693)
T ss_pred eee-cCCCchhHHHHHHHHHHhc-----------------------------CCcchhhHHHHHHH--------------
Confidence 543 6677666666655443322 11122333333321
Q ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 594 HSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 594 ~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
..+.....|.++.+-|...|-.+ +.+|+..|..-+..+
T Consensus 382 thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~i~ps 419 (693)
T KOG0730|consen 382 THGYVGADLAALCREASLQATRR-----TLEIFQEALMGIRPS 419 (693)
T ss_pred ccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhcCCch
Confidence 23344567777887766655332 778888887665554
No 224
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.47 E-value=1.6e-07 Score=93.85 Aligned_cols=172 Identities=22% Similarity=0.278 Sum_probs=95.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC------CceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP------RGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
.++|+|++|+|||+|+.+++.... +..|.+...... .+. ...++ +.. ..-.-.+..-.++|||+++.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~-~~~-~~~~~---~~~--~~~~~~~~~~DlL~iDDi~~ 108 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR-EFA-DALRD---GEI--EEFKDRLRSADLLIIDDIQF 108 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH-HHH-HHHHT---TSH--HHHHHHHCTSSEEEEETGGG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH-HHH-HHHHc---ccc--hhhhhhhhcCCEEEEecchh
Confidence 589999999999999999987642 112221110000 000 00000 000 00000122457999999999
Q ss_pred CChHH--HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccce--EEEeccCC
Q 005024 445 MDESD--RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDL--LWLILDRA 520 (718)
Q Consensus 445 ~~~~~--~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdl--i~~~~d~~ 520 (718)
+.... |..|...++.-. ...-.+|.|++.....+ ..+.+.|.|||.- ++-+ ..|
T Consensus 109 l~~~~~~q~~lf~l~n~~~------------~~~k~li~ts~~~P~~l---------~~~~~~L~SRl~~Gl~~~l-~~p 166 (219)
T PF00308_consen 109 LAGKQRTQEELFHLFNRLI------------ESGKQLILTSDRPPSEL---------SGLLPDLRSRLSWGLVVEL-QPP 166 (219)
T ss_dssp GTTHHHHHHHHHHHHHHHH------------HTTSEEEEEESS-TTTT---------TTS-HHHHHHHHCSEEEEE----
T ss_pred hcCchHHHHHHHHHHHHHH------------hhCCeEEEEeCCCCccc---------cccChhhhhhHhhcchhhc-CCC
Confidence 97654 677776665311 11234555565443322 1478899999964 3322 333
Q ss_pred ChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCH
Q 005024 521 DMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA-ARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTV 599 (718)
Q Consensus 521 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~ 599 (718)
+.+...+++.. +......+++++.++|... .+.++
T Consensus 167 -----------------------------d~~~r~~il~~~a~~~~~~l~~~v~~~l~~~---------------~~~~~ 202 (219)
T PF00308_consen 167 -----------------------------DDEDRRRILQKKAKERGIELPEEVIEYLARR---------------FRRDV 202 (219)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTT--S-HHHHHHHHHH---------------TTSSH
T ss_pred -----------------------------CHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh---------------hcCCH
Confidence 33444444443 3334446999999999985 57899
Q ss_pred HHHHHHHHHHHHHHHh
Q 005024 600 RTLLSILRISAALARL 615 (718)
Q Consensus 600 R~l~~lirla~a~A~l 615 (718)
|.|+.++....+++++
T Consensus 203 r~L~~~l~~l~~~~~~ 218 (219)
T PF00308_consen 203 RELEGALNRLDAYAQL 218 (219)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999988887764
No 225
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.45 E-value=3e-07 Score=98.20 Aligned_cols=140 Identities=20% Similarity=0.190 Sum_probs=85.6
Q ss_pred cccccHHHHHHHHHHHh-CCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCCceee---------------
Q 005024 337 EIYGHEDIKKALLLLLV-GAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPRGVYT--------------- 399 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~-~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~~~~~--------------- 399 (718)
+++|++.+...++.... .+..+ | +||+||||+|||++|.++++.+.-....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~------------halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLP------------HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCC------------ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 35666666666665554 44322 7 9999999999999999999887311100
Q ss_pred cCCCCCCCcceeeEeecccccceee----ecceEe--eecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEe
Q 005024 400 TGRGSSGVGLTAAVQRDNVTNEMVL----EGGALV--LADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSL 473 (718)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~g~~~~----~~g~l~--~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l 473 (718)
.|.......++++..+......-.+ +..... .+...+++|||+|.|+.+.+++|+..||+.
T Consensus 70 ~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep------------- 136 (325)
T COG0470 70 AGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP------------- 136 (325)
T ss_pred hcCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------
Confidence 0111122222222222110000000 000000 133469999999999999999999999964
Q ss_pred cCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEE
Q 005024 474 NARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLW 514 (718)
Q Consensus 474 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~ 514 (718)
+.++.+|.+||... .+.+++.||+-.+.
T Consensus 137 ~~~~~~il~~n~~~-------------~il~tI~SRc~~i~ 164 (325)
T COG0470 137 PKNTRFILITNDPS-------------KILPTIRSRCQRIR 164 (325)
T ss_pred CCCeEEEEEcCChh-------------hccchhhhcceeee
Confidence 45677888888544 68889999995444
No 226
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.41 E-value=3.7e-06 Score=92.68 Aligned_cols=98 Identities=13% Similarity=0.200 Sum_probs=69.3
Q ss_pred cceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC-CCCCCCCCCcchhcCCCh
Q 005024 426 GGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA-WGRYDLRRTPAENINLPP 504 (718)
Q Consensus 426 ~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~-~g~~~~~~~~~~~~~l~~ 504 (718)
.|++..|++|++=+=|+-|.+.+...-|+.+-+++.+... +....++.+-.|||.+|.. +.+|- +..-.+
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~--~~~~~i~~D~vIiaHsNE~E~~~F~-------~nk~nE 318 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGT--EGIGAIPFDGIILAHSNESEWQTFR-------NNKNNE 318 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCC--CCcceeccceeEEecCCHHHHHHHh-------cCccch
Confidence 4888899988776669999999999999999999987554 4445678899999999976 34442 225679
Q ss_pred hhhcccceEEEeccCC-ChhHHHHHHhhhhh
Q 005024 505 ALLSRFDLLWLILDRA-DMDSDLEMARHVVY 534 (718)
Q Consensus 505 ~ll~Rfdli~~~~d~~-~~~~d~~i~~~il~ 534 (718)
||++|.-++- + ++. ...++.+|-+.++.
T Consensus 319 A~~DRi~~V~-V-PY~lr~~eE~kIYeKll~ 347 (644)
T PRK15455 319 AFLDRIYIVK-V-PYCLRVSEEIKIYEKLLR 347 (644)
T ss_pred hhhceEEEEe-C-CccCChhHHHHHHHHHhc
Confidence 9999983322 1 222 22345566555554
No 227
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.1e-07 Score=93.34 Aligned_cols=117 Identities=25% Similarity=0.278 Sum_probs=71.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec--CCC-CCCCcceeeEeecccccceeeecceEeeecCCeeeecccccC--
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT--GRG-SSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKM-- 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~-- 445 (718)
-++|+||||||||.++++++..+.-.+... +.. ...+|-.+...++-+.-+... ...++|+||||..
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~--------~pciifmdeiDAigG 239 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREV--------IPCIIFMDEIDAIGG 239 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhh--------CceEEeehhhhhhcc
Confidence 699999999999999999999885443321 111 111222222222221111011 1368999999864
Q ss_pred ---------ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEE
Q 005024 446 ---------DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLW 514 (718)
Q Consensus 446 ---------~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~ 514 (718)
+...|..|.+.+.+-. | ..-..++-+|.|+|... .|.+||++ |.|-.+
T Consensus 240 Rr~se~Ts~dreiqrTLMeLlnqmd------g--fd~l~rVk~ImatNrpd-------------tLdpaLlRpGRldrk~ 298 (388)
T KOG0651|consen 240 RRFSEGTSSDREIQRTLMELLNQMD------G--FDTLHRVKTIMATNRPD-------------TLDPALLRPGRLDRKV 298 (388)
T ss_pred EEeccccchhHHHHHHHHHHHHhhc------c--chhcccccEEEecCCcc-------------ccchhhcCCcccccee
Confidence 3345666777776321 1 12235788999999876 68888887 776665
Q ss_pred Ee
Q 005024 515 LI 516 (718)
Q Consensus 515 ~~ 516 (718)
..
T Consensus 299 ~i 300 (388)
T KOG0651|consen 299 EI 300 (388)
T ss_pred cc
Confidence 43
No 228
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.40 E-value=5.1e-06 Score=88.95 Aligned_cols=193 Identities=19% Similarity=0.243 Sum_probs=112.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC----CCc--eeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA----PRG--VYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~----~~~--~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
.++|+|++|.|||+|+++++..+ |.. +|........ .+ ....++....+| +. .. +-.+++||+++-
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~-~~-v~a~~~~~~~~F--k~---~y-~~dlllIDDiq~ 186 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN-DF-VKALRDNEMEKF--KE---KY-SLDLLLIDDIQF 186 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH-HH-HHHHHhhhHHHH--HH---hh-ccCeeeechHhH
Confidence 79999999999999999999876 211 1111110000 00 000011000000 00 00 235899999998
Q ss_pred CChH--HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCCh
Q 005024 445 MDES--DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADM 522 (718)
Q Consensus 445 ~~~~--~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~ 522 (718)
+... .|..+......= . ...-.+|.|+....... ..+.+.|.|||.--.+.
T Consensus 187 l~gk~~~qeefFh~FN~l----~--------~~~kqIvltsdr~P~~l---------~~~~~rL~SR~~~Gl~~------ 239 (408)
T COG0593 187 LAGKERTQEEFFHTFNAL----L--------ENGKQIVLTSDRPPKEL---------NGLEDRLRSRLEWGLVV------ 239 (408)
T ss_pred hcCChhHHHHHHHHHHHH----H--------hcCCEEEEEcCCCchhh---------ccccHHHHHHHhceeEE------
Confidence 7554 355544433210 0 00113455554332222 14778999999754332
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAA-RRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
.+.|.+.+.....+... ......+++++.++++.. ..-++|+
T Consensus 240 ----------------------~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~---------------~~~nvRe 282 (408)
T COG0593 240 ----------------------EIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKR---------------LDRNVRE 282 (408)
T ss_pred ----------------------eeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------------hhccHHH
Confidence 12333344444444432 234457999999999884 5788999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
|+..+...-+.|....+ .+|.+-+.++++.+...
T Consensus 283 LegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 283 LEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 99999888888887776 79999999998877654
No 229
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.5e-06 Score=96.42 Aligned_cols=211 Identities=16% Similarity=0.242 Sum_probs=126.3
Q ss_pred hcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecC-CCCC--CCcc
Q 005024 333 SLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTG-RGSS--GVGL 409 (718)
Q Consensus 333 si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~-~~~~--~~~l 409 (718)
.+.| ++|.+.-...++--|...+.+ |-+|+|+||+|||.++..+|......-.... .+.. ...+
T Consensus 168 klDP-vIGRd~EI~r~iqIL~RR~KN------------NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDP-VIGRDEEIRRTIQILSRRTKN------------NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCC-CcChHHHHHHHHHHHhccCCC------------CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 3455 456666555555556555433 8899999999999999999987633211100 0000 0000
Q ss_pred eeeEeecccccceeee--c--ceEeeecCCeeeecccccCC---------hHHHHHHHHhhcccEEEEeeCCeEEEecCc
Q 005024 410 TAAVQRDNVTNEMVLE--G--GALVLADMGICAIDEFDKMD---------ESDRTAIHEVMEQQTVSIAKAGITTSLNAR 476 (718)
Q Consensus 410 ~~~~~~~~~~g~~~~~--~--g~l~~a~~gil~iDEi~~~~---------~~~~~~L~~~me~~~i~i~k~g~~~~l~~~ 476 (718)
..-+....+.|+|.-. . -.+..+.+-|+||||++.+- -+.-+.|..+|..|++
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL-------------- 300 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL-------------- 300 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCe--------------
Confidence 0000111122322110 0 11222345699999998761 2234455566665543
Q ss_pred eEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 005024 477 TAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRA 556 (718)
Q Consensus 477 ~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~ 556 (718)
.+|+||...+-| .-+.-++||-+||--+++ +.|+.+.-..|.+-+-..+.... --.++.+-|..
T Consensus 301 -~~IGATT~~EYR--------k~iEKD~AL~RRFQ~V~V--~EPs~e~ti~ILrGlk~~yE~hH-----~V~i~D~Al~a 364 (786)
T COG0542 301 -RCIGATTLDEYR--------KYIEKDAALERRFQKVLV--DEPSVEDTIAILRGLKERYEAHH-----GVRITDEALVA 364 (786)
T ss_pred -EEEEeccHHHHH--------HHhhhchHHHhcCceeeC--CCCCHHHHHHHHHHHHHHHHHcc-----CceecHHHHHH
Confidence 457777766321 124678999999987775 88998887777766655442221 12377888888
Q ss_pred HHHHHHhc--CCCCCHHHHHHHHHHHHHhhHh
Q 005024 557 YISAARRL--SPCVPRELEEYIAAAYSNIRQE 586 (718)
Q Consensus 557 ~i~~~~~~--~p~ls~~~~~~l~~~y~~lr~~ 586 (718)
......++ ...+++.|++.+-+....+|-.
T Consensus 365 Av~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 365 AVTLSDRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred HHHHHHhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 88877775 3469999999999988877764
No 230
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=98.33 E-value=1.2e-05 Score=89.78 Aligned_cols=252 Identities=17% Similarity=0.226 Sum_probs=146.3
Q ss_pred hhHHHHHHhhcCCcccccH-HHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCC
Q 005024 324 GDIYNKLARSLAPEIYGHE-DIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGR 402 (718)
Q Consensus 324 ~~~~~~l~~si~p~i~g~~-~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~ 402 (718)
++..+.|..|+-=+--+.+ ..|..++.-|+--+ -.|.|++=.||.|||||.+.+ +.+|.+...+|.
T Consensus 180 dEWid~LlrSiG~eP~~~~~r~K~~~L~RliPlV----------E~N~Nl~ELgPrgTGKS~~y~---eiSp~~~liSGG 246 (675)
T TIGR02653 180 DEWIDVLLRSVGMEPTNLERRTKWHLLTRLIPLV----------ENNYNLCELGPRGTGKSHVYK---ECSPNSILMSGG 246 (675)
T ss_pred HHHHHHHHHhcCCCccccCHHHHHHHHHhhhhhc----------ccccceEEECCCCCCcceeee---ccCCceEEEECC
Confidence 3455677777543333332 45666665554322 223499999999999999987 677888888877
Q ss_pred CCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC---hHHHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 403 GSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD---ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 403 ~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~---~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
..+.+.|.. +..++ ..|.+. .-.++++||+..+. ++....|-..|+.|.++.. . .+..+.+++
T Consensus 247 ~~T~A~LFy----n~~~~----~~GlVg--~~D~VaFDEva~i~f~d~d~v~imK~YM~sG~FsRG---~-~~~~a~as~ 312 (675)
T TIGR02653 247 QTTVANLFY----NMSTR----QIGLVG--MWDVVAFDEVAGIEFKDKDGVQIMKDYMASGSFARG---K-ESIEGKASI 312 (675)
T ss_pred ccchhHeeE----EcCCC----ceeEEe--eccEEEEeeccccccCCHHHHHHHHHHhhcCccccc---c-cccccceeE
Confidence 766555533 32232 233332 23589999998863 3445567778999998874 2 244566666
Q ss_pred EEEeCCCCC------CCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHH
Q 005024 480 LSAANPAWG------RYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAI 553 (718)
Q Consensus 480 iaa~Np~~g------~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 553 (718)
+.-.|-... .-+--.++.+-+.-+.|++|||.-+.--++.|....+. +. .--.+..+.
T Consensus 313 vfvGNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~yiPGWeiPk~~~e~------~t----------~~yGl~~Dy 376 (675)
T TIGR02653 313 VFVGNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHYYIPGWEIPKMRPEY------FT----------NRYGFIVDY 376 (675)
T ss_pred EEEcccCCchHHHhhcccccccCChhhcccchHHHHhhccCcCCcCccCCHHH------cc----------cCCcchHHH
Confidence 665664410 00111122222233678889986655433333321110 00 111244444
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHH
Q 005024 554 LRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARL-RFSETVAQSDVDEALRL 632 (718)
Q Consensus 554 l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l-~~~~~V~~~dv~~ai~l 632 (718)
+.+++...|+. .+++ .+.+++ ......+.|.-..+-+..-.+.|+ .-...++.+|++++++.
T Consensus 377 lsE~l~~lR~~--~~~~----~~~~~~-----------~l~~~~~~RD~~aV~kt~SgllKLl~P~~~~~~ee~e~~l~~ 439 (675)
T TIGR02653 377 LAEYMREMRKR--SFAD----AIDRFF-----------KLGNNLNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLTY 439 (675)
T ss_pred HHHHHHHHHhh--hHHH----HHHhhE-----------ecCCCCchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 44444444331 1111 111111 224678899999999988888887 56678999999988766
Q ss_pred Hhh
Q 005024 633 MQM 635 (718)
Q Consensus 633 ~~~ 635 (718)
...
T Consensus 440 Ale 442 (675)
T TIGR02653 440 AME 442 (675)
T ss_pred HHH
Confidence 543
No 231
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.31 E-value=4.3e-06 Score=82.85 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=46.8
Q ss_pred CeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEE
Q 005024 435 GICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLW 514 (718)
Q Consensus 435 gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~ 514 (718)
.+++|.|.|++..+.|.+|.+-||. +...|++|..+|... .+-+|+.||+ +.+
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEk-------------Ys~~~RlIl~cns~S-------------riIepIrSRC-l~i 181 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEK-------------YSSNCRLILVCNSTS-------------RIIEPIRSRC-LFI 181 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHH-------------HhcCceEEEEecCcc-------------cchhHHhhhe-eEE
Confidence 5899999999999999999999994 345788999999776 7999999999 554
Q ss_pred Ee
Q 005024 515 LI 516 (718)
Q Consensus 515 ~~ 516 (718)
.+
T Consensus 182 Rv 183 (351)
T KOG2035|consen 182 RV 183 (351)
T ss_pred eC
Confidence 43
No 232
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=3.5e-06 Score=89.31 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=69.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC----ceeecCCCCCC----Ccc-eeeEeecccc--cceee---e----c--ceEe
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR----GVYTTGRGSSG----VGL-TAAVQRDNVT--NEMVL---E----G--GALV 430 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~----~~~~~~~~~~~----~~l-~~~~~~~~~~--g~~~~---~----~--g~l~ 430 (718)
.+||.||+|+||+++|+++++.+-- ....||.-.+- .|- .......+.. ..... + . -.-.
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~ 103 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQ 103 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccc
Confidence 4889999999999999999988731 11112211000 000 0000000000 00000 0 0 0011
Q ss_pred eecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhccc
Q 005024 431 LADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 431 ~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
.+...|++||++++|+.+..++|+..||+- |.++.+|.+|+... .+.+++.||+
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~~~~-------------~ll~TI~SRc 157 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISHQPS-------------RLLPTIKSRC 157 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEECChh-------------hCcHHHHhhc
Confidence 234569999999999999999999999963 33455555565444 6999999999
Q ss_pred ceE
Q 005024 511 DLL 513 (718)
Q Consensus 511 dli 513 (718)
-.+
T Consensus 158 ~~~ 160 (328)
T PRK05707 158 QQQ 160 (328)
T ss_pred eee
Confidence 554
No 233
>PHA01747 putative ATP-dependent protease
Probab=98.31 E-value=3.5e-06 Score=87.13 Aligned_cols=133 Identities=18% Similarity=0.186 Sum_probs=88.7
Q ss_pred ccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC-
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD- 446 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~- 446 (718)
.+.|++=.||.|||||++.+-+...+|..+ +|...+.+.| +.+..++ ..|.+.+ ..++++||+....
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~~TvA~L----FyN~~t~----~~GLVg~--~D~VaFDEVa~i~f 256 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFNFRY--YTEPPTYANL----VYDAKTN----ALGLVFL--SNGLIFDEIQTWKD 256 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCCcee--eCCCCchHHh----eEecCCC----ceeEEee--ccEEEEEccccccC
Confidence 455999999999999999999988888776 5555554444 3333333 3344433 3589999999875
Q ss_pred ---hHHHHHHHHhhcccEEEEeeCCeEE--EecCceEEEEEeCCCCCCCCCCCC--cchh------c--CCChhhhcccc
Q 005024 447 ---ESDRTAIHEVMEQQTVSIAKAGITT--SLNARTAVLSAANPAWGRYDLRRT--PAEN------I--NLPPALLSRFD 511 (718)
Q Consensus 447 ---~~~~~~L~~~me~~~i~i~k~g~~~--~l~~~~~viaa~Np~~g~~~~~~~--~~~~------~--~l~~~ll~Rfd 511 (718)
.+....|..-||+|.++..+.+... +..+.++++.+.|+..-..+.... ..++ + .+..||||||.
T Consensus 257 ~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIh 336 (425)
T PHA01747 257 SNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIA 336 (425)
T ss_pred CCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhh
Confidence 3455677888999999986543333 677889999999987322211111 0111 1 13789999997
Q ss_pred e
Q 005024 512 L 512 (718)
Q Consensus 512 l 512 (718)
+
T Consensus 337 i 337 (425)
T PHA01747 337 I 337 (425)
T ss_pred h
Confidence 3
No 234
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=1.1e-05 Score=85.82 Aligned_cols=209 Identities=15% Similarity=0.167 Sum_probs=126.1
Q ss_pred eeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEe-cCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEE
Q 005024 436 ICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSL-NARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLW 514 (718)
Q Consensus 436 il~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l-~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~ 514 (718)
++++||+|.+....+..|+++.| +..+ +.++.+|+-||.. ++...+|.|..+
T Consensus 259 llVlDEmD~L~tr~~~vLy~lFe-----------wp~lp~sr~iLiGiANsl--------------DlTdR~LprL~~-- 311 (529)
T KOG2227|consen 259 LLVLDEMDHLITRSQTVLYTLFE-----------WPKLPNSRIILIGIANSL--------------DLTDRFLPRLNL-- 311 (529)
T ss_pred EEEechhhHHhhcccceeeeehh-----------cccCCcceeeeeeehhhh--------------hHHHHHhhhhhh--
Confidence 78999999988766666665554 3333 3588889888855 233333333211
Q ss_pred EeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHhhHhhhhcCC
Q 005024 515 LILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPC--VPRELEEYIAAAYSNIRQEEAKSNT 592 (718)
Q Consensus 515 ~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~--ls~~~~~~l~~~y~~lr~~~~~~~~ 592 (718)
.....+....|+||+.+++-+++...-.-.+. +-+.|+++.+.-.
T Consensus 312 ---------------------~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKv------------ 358 (529)
T KOG2227|consen 312 ---------------------DLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKV------------ 358 (529)
T ss_pred ---------------------ccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHh------------
Confidence 00111223468999999999998865443332 2334555544422
Q ss_pred CCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ccHHHHHHHHHHHhhhcccccccccccCccchHHHH
Q 005024 593 PHSYTTVRTLLSILRISAALARLRFSET----------------VAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDI 656 (718)
Q Consensus 593 ~~~~~s~R~l~~lirla~a~A~l~~~~~----------------V~~~dv~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i 656 (718)
....|+.|.+..+.|.|..+|..+.+.. |..+|+..++.-+..+........-+.++ ..+
T Consensus 359 aa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~s~~slplqq----kii 434 (529)
T KOG2227|consen 359 AAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSARSRESLPLQQ----KII 434 (529)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChhhhhhhhcCccc----chh
Confidence 2467999999999999999998766544 55777877776554332211111001111 123
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHH----HHHc---CCCHHHHHHHHHHHHhcCeEEEeCC
Q 005024 657 YSILRDEAARSNKLDVSYAHALNW----ISRK---GYSEAQLKECLEEYAALNVWQIHPH 709 (718)
Q Consensus 657 ~~~i~~~~~~~~~~~~~~~~l~~~----~~~~---g~~~~~~~~~l~~l~~~g~i~~~~~ 709 (718)
+-.+..++.... ..++++++++. |... -++++++...-..|+..|++-+..+
T Consensus 435 lctl~~l~r~~k-kd~s~~eL~e~Y~k~C~~~~I~~ld~tEF~~i~~ilet~gil~l~~~ 493 (529)
T KOG2227|consen 435 LCTLVLLIRGNK-KDVSIAELYEAYLKACQKREIAPLDRTEFLSICDILETQGILRLRRK 493 (529)
T ss_pred HHHHHHHHhccc-ccccHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHhhhHHHHhhh
Confidence 333443333322 45788888876 4443 4667889888889999988766544
No 235
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.27 E-value=8.6e-06 Score=79.26 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=73.7
Q ss_pred cccccHHHHHHHH---HHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE
Q 005024 337 EIYGHEDIKKALL---LLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV 413 (718)
Q Consensus 337 ~i~g~~~~k~~i~---~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~ 413 (718)
.+.|.+..|.++. ..++.|.+ .+ ||||.|..|||||++.|++...... .+.. |. .+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~p---AN--------nVLLwGaRGtGKSSLVKA~~~e~~~------~glr---LV-EV 119 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLP---AN--------NVLLWGARGTGKSSLVKALLNEYAD------EGLR---LV-EV 119 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCc---cc--------ceEEecCCCCChHHHHHHHHHHHHh------cCCe---EE-EE
Confidence 6789999999887 45566642 22 9999999999999999999877521 1110 11 11
Q ss_pred eecccccceeeecceEeeecCCeeeecccccC-ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 414 QRDNVTNEMVLEGGALVLADMGICAIDEFDKM-DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 414 ~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~-~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
.++....--.+-.-.-....+=|+|+|++.== .++.-.+|-.+|| |.....|.++.|.||+|..
T Consensus 120 ~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le---------G~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 120 DKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE---------GGVEGRPANVLFYATSNRR 184 (287)
T ss_pred cHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc---------CCcccCCCeEEEEEecCCc
Confidence 11111000000000000112348999998532 3344566778887 6667779999999999977
No 236
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.24 E-value=9.3e-07 Score=81.20 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=67.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---ee-ecCCCCCCCccee----eEeec--ccccceeeecceEeeec---CCee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VY-TTGRGSSGVGLTA----AVQRD--NVTNEMVLEGGALVLAD---MGIC 437 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~-~~~~~~~~~~l~~----~~~~~--~~~g~~~~~~g~l~~a~---~gil 437 (718)
+++|+||||||||++++.++..+... ++ ............. ..... ...+..... ..+..+. ..++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi 82 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARKLKPDVL 82 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHhcCCCEE
Confidence 89999999999999999999998653 22 2211111000000 00000 000100111 1222222 3899
Q ss_pred eecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEe
Q 005024 438 AIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLI 516 (718)
Q Consensus 438 ~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~ 516 (718)
+|||++.+.............. ..............+|+++|+. .. ..+..+..|++..+.+
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~--~~----------~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTNDE--KD----------LGPALLRRRFDRRIVL 144 (148)
T ss_pred EEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCCC--cc----------CchhhhhhccceEEEe
Confidence 9999999988776654433111 0000011123467899999961 11 4555666677666543
No 237
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=9.5e-06 Score=94.78 Aligned_cols=160 Identities=23% Similarity=0.306 Sum_probs=90.0
Q ss_pred CCcccccHHH----HHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCcee----ecCCCCCC
Q 005024 335 APEIYGHEDI----KKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVY----TTGRGSSG 406 (718)
Q Consensus 335 ~p~i~g~~~~----k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~----~~~~~~~~ 406 (718)
.++|-|.+.+ |..++..|.-+.......=..-| .||+.||||||||.+|++++...++.-- -..++...
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr---gvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR---GVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc---ceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 4577777775 55555555443321110001111 4999999999999999999998765411 01111100
Q ss_pred CcceeeEeecccccceeeecc-----eEeee---cCCeeeecccccCCh-----------HHHHHHHHhhcccEEEEeeC
Q 005024 407 VGLTAAVQRDNVTNEMVLEGG-----ALVLA---DMGICAIDEFDKMDE-----------SDRTAIHEVMEQQTVSIAKA 467 (718)
Q Consensus 407 ~~l~~~~~~~~~~g~~~~~~g-----~l~~a---~~gil~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~k~ 467 (718)
-+.|..++- .+..| ...|+|.||||-+.+ ...+.|+-+|.
T Consensus 341 ------------lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmd--------- 399 (1080)
T KOG0732|consen 341 ------------LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD--------- 399 (1080)
T ss_pred ------------hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhcc---------
Confidence 112222210 01111 246999999995532 22345666664
Q ss_pred CeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccC
Q 005024 468 GITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQN 538 (718)
Q Consensus 468 g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~ 538 (718)
|... ...+.||+|+|... .+++||.+ |||-.|.+ ..|+.+... +|+.+|..
T Consensus 400 Glds--RgqVvvigATnRpd-------------a~dpaLRRPgrfdref~f-~lp~~~ar~----~Il~Ihtr 452 (1080)
T KOG0732|consen 400 GLDS--RGQVVVIGATNRPD-------------AIDPALRRPGRFDREFYF-PLPDVDARA----KILDIHTR 452 (1080)
T ss_pred CCCC--CCceEEEcccCCcc-------------ccchhhcCCcccceeEee-eCCchHHHH----HHHHHhcc
Confidence 3221 23688999999886 68888855 89877765 455544433 45555543
No 238
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=2.8e-05 Score=81.76 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHHhCCccccCCCCccccccce-eeecCCCcchHHHHHHHHHHHCCC-ceeecCCCC--------CCCcce
Q 005024 341 HEDIKKALLLLLVGAPHRKLKDGMKIRGDLH-ICLMGDPGVAKSQLLKHIINVAPR-GVYTTGRGS--------SGVGLT 410 (718)
Q Consensus 341 ~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~-vLl~G~pGtGKt~la~~i~~~~~~-~~~~~~~~~--------~~~~l~ 410 (718)
++.++..+..++..|... | +||.||+|+||+.+|.++++.+-- ....++... +..++.
T Consensus 9 ~~~~~~~l~~~~~~~rl~------------HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLG------------HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHcCCcc------------eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 345566677777666433 4 899999999999999999977621 000011000 000010
Q ss_pred eeEee-ccc-cc-----ceeeec-----c----eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEec
Q 005024 411 AAVQR-DNV-TN-----EMVLEG-----G----ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLN 474 (718)
Q Consensus 411 ~~~~~-~~~-~g-----~~~~~~-----g----~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~ 474 (718)
.+. .+. .| ...++. . .-..+...|++||+.++|+....++|+..||+- |
T Consensus 77 --~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p 141 (319)
T PRK08769 77 --LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP-------------S 141 (319)
T ss_pred --EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC-------------C
Confidence 000 110 01 000000 0 001123459999999999999999999999963 3
Q ss_pred CceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEE
Q 005024 475 ARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLW 514 (718)
Q Consensus 475 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~ 514 (718)
.++.+|-.++... .+.+.+.||+-.+.
T Consensus 142 ~~~~fiL~~~~~~-------------~lLpTIrSRCq~i~ 168 (319)
T PRK08769 142 PGRYLWLISAQPA-------------RLPATIRSRCQRLE 168 (319)
T ss_pred CCCeEEEEECChh-------------hCchHHHhhheEee
Confidence 4565665566444 78999999995553
No 239
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.13 E-value=2.4e-06 Score=104.94 Aligned_cols=133 Identities=18% Similarity=0.257 Sum_probs=102.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCC--CCCCCcceeeEeecccccceeeecceEeee--cCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGR--GSSGVGLTAAVQRDNVTNEMVLEGGALVLA--DMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a--~~gil~iDEi~~~~ 446 (718)
++||.||+|+|||.+++++++...+.+..... ......+.+.. ....+|...++.|.++.| +|-.+++||++..+
T Consensus 442 pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y-~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTY-VADDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhh-hcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 79999999999999999999998665444221 11111222211 112367778899999877 67799999999999
Q ss_pred hHHHHHHHHhhcc-cEEEEeeCCeEEEecCceEEEEEeCCC---CCCCCCCCCcchhcCCChhhhcccceEE
Q 005024 447 ESDRTAIHEVMEQ-QTVSIAKAGITTSLNARTAVLSAANPA---WGRYDLRRTPAENINLPPALLSRFDLLW 514 (718)
Q Consensus 447 ~~~~~~L~~~me~-~~i~i~k~g~~~~l~~~~~viaa~Np~---~g~~~~~~~~~~~~~l~~~ll~Rfdli~ 514 (718)
.++..+|.++++. +.+.+.........+.++.+.||-||. .|+. .+..++++||.-+.
T Consensus 521 ~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk----------~lsRa~~~rf~e~~ 582 (1856)
T KOG1808|consen 521 HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRK----------ILSRALRNRFIELH 582 (1856)
T ss_pred hHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhh----------hhhhcccccchhhh
Confidence 9999999999987 888888666667777899999999998 2444 78999999995544
No 240
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.05 E-value=5.3e-06 Score=86.46 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=62.2
Q ss_pred cceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC-CCCCCCCCCcchhcCCCh
Q 005024 426 GGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA-WGRYDLRRTPAENINLPP 504 (718)
Q Consensus 426 ~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~-~g~~~~~~~~~~~~~l~~ 504 (718)
.|.+..|++|++=+=|+-+.+.+....||.+.++|.+... +....++.+..|||.+|+. +..|... .-.+
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~~~-------~~~e 296 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFKNN-------KNNE 296 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHhcc-------ccch
Confidence 4788889999998889999999999999999999988775 3344567889999999987 3333111 3447
Q ss_pred hhhcccceEE
Q 005024 505 ALLSRFDLLW 514 (718)
Q Consensus 505 ~ll~Rfdli~ 514 (718)
||.+|+..+-
T Consensus 297 Af~DRi~~I~ 306 (358)
T PF08298_consen 297 AFKDRIEVIK 306 (358)
T ss_pred hhhhheEEEe
Confidence 9999995553
No 241
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.98 E-value=0.00011 Score=86.75 Aligned_cols=204 Identities=15% Similarity=0.081 Sum_probs=119.6
Q ss_pred eeeecCCCcchHHHHHHH-HHHHCCCceeecCCCCCCCcceee--------EeecccccceeeecceEeeecCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKH-IINVAPRGVYTTGRGSSGVGLTAA--------VQRDNVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~-i~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
.++++||||+|||++.-- +-..+-..+ .+.+.+....+.+ ...-+.+|...+-|...+ ..+|+|.||
T Consensus 1496 ~~i~cGppGSgK~mlM~~sLrs~~~~ev--~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~v--K~lVLFcDe 1571 (3164)
T COG5245 1496 SYIYCGPPGSGKEMLMCPSLRSELITEV--KYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVV--KDLVLFCDE 1571 (3164)
T ss_pred eEEEECCCCCccchhcchhhhhhhheee--eEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcch--hheEEEeec
Confidence 689999999999997532 222111000 1111111111111 111122344444443322 468999999
Q ss_pred cccCC-------hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC--CCCCCCCCCcchhcCCChhhhcccce
Q 005024 442 FDKMD-------ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA--WGRYDLRRTPAENINLPPALLSRFDL 512 (718)
Q Consensus 442 i~~~~-------~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~--~g~~~~~~~~~~~~~l~~~ll~Rfdl 512 (718)
|+ || +++.-.|...||.|-+.-.-+..++++ ++..+.+|+||. .||- ++++.+++|--+
T Consensus 1572 In-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~td~gRv----------~~~eRf~r~~v~ 1639 (3164)
T COG5245 1572 IN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPGTDEGRV----------KYYERFIRKPVF 1639 (3164)
T ss_pred cC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhh-cceEEEccCCCCCCcccC----------ccHHHHhcCceE
Confidence 99 54 444556778888764433222333332 578899999998 5766 888999998755
Q ss_pred EEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCC
Q 005024 513 LWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNT 592 (718)
Q Consensus 513 i~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~ 592 (718)
+|. ++|....-..|-+-++. ..|+..- + ...++++....-..+|...|.......+
T Consensus 1640 vf~--~ype~~SL~~Iyea~l~--------------------~s~l~~~-e-f~~~se~~~~aSv~ly~~~k~~~k~~lq 1695 (3164)
T COG5245 1640 VFC--CYPELASLRNIYEAVLM--------------------GSYLCFD-E-FNRLSEETMSASVELYLSSKDKTKFFLQ 1695 (3164)
T ss_pred EEe--cCcchhhHHHHHHHHHH--------------------HHHHhhH-H-HHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 554 67776555544332111 1111100 0 1146777777788899998887665666
Q ss_pred CCcccCHHHHHHHHHHHHHHHH
Q 005024 593 PHSYTTVRTLLSILRISAALAR 614 (718)
Q Consensus 593 ~~~~~s~R~l~~lirla~a~A~ 614 (718)
.+...++|+|-.++|--...|.
T Consensus 1696 ~~y~y~pReLtR~lr~i~~yae 1717 (3164)
T COG5245 1696 MNYGYKPRELTRSLRAIFGYAE 1717 (3164)
T ss_pred cccccChHHHHHHHHHHHhHHh
Confidence 6788899999999986666553
No 242
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=6.3e-05 Score=79.98 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=67.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC----CceeecCCCCC--------CCcceeeEeeccccc--ceeee------c---c
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP----RGVYTTGRGSS--------GVGLTAAVQRDNVTN--EMVLE------G---G 427 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~----~~~~~~~~~~~--------~~~l~~~~~~~~~~g--~~~~~------~---g 427 (718)
-+||.||+|+||+++|.++|+.+- .....||.-.+ ..++. .-.+..+ ...++ . -
T Consensus 26 A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~---~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 26 ALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYY---TLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred EEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEE---EEecccccccCCHHHHHHHHHHHhh
Confidence 577999999999999999998872 11112332110 00110 0001100 00000 0 0
Q ss_pred eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEE-EEeCCCCCCCCCCCCcchhcCCChhh
Q 005024 428 ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVL-SAANPAWGRYDLRRTPAENINLPPAL 506 (718)
Q Consensus 428 ~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~vi-aa~Np~~g~~~~~~~~~~~~~l~~~l 506 (718)
.-..+...|++||+.++|+....++|+..||+- |.++.+| .|.||. .+.+.+
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTI 155 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTDAAANALLKTLEEP-------------PENTWFFLACREPA--------------RLLATL 155 (334)
T ss_pred ccccCCceEEEEcchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHH
Confidence 011234569999999999999999999999973 3344444 444444 799999
Q ss_pred hcccceE
Q 005024 507 LSRFDLL 513 (718)
Q Consensus 507 l~Rfdli 513 (718)
.||+-.+
T Consensus 156 rSRCq~~ 162 (334)
T PRK07993 156 RSRCRLH 162 (334)
T ss_pred Hhccccc
Confidence 9999544
No 243
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.0001 Score=77.70 Aligned_cols=135 Identities=15% Similarity=0.185 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC----CceeecCCCCCC----Cc-ceee
Q 005024 342 EDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP----RGVYTTGRGSSG----VG-LTAA 412 (718)
Q Consensus 342 ~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~----~~~~~~~~~~~~----~~-l~~~ 412 (718)
......+..++..|... . -.||.||+|+||+.+|+.+++.+- .....||.-.+- .| -+.-
T Consensus 8 ~~~~~~l~~~~~~~rl~---H--------A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 8 QPTYQQITQAFQQGLGH---H--------ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred HHHHHHHHHHHHcCCcc---e--------eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 33455566666665422 1 467999999999999999998872 111123221100 00 0000
Q ss_pred Eeecccccc-ee---ee---c---ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEE
Q 005024 413 VQRDNVTNE-MV---LE---G---GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSA 482 (718)
Q Consensus 413 ~~~~~~~g~-~~---~~---~---g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa 482 (718)
..-.+..|. .. .+ . -.-..+...|++||+.++|+...+++|+..||+- |.++.+|-+
T Consensus 77 ~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-------------p~~~~fiL~ 143 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP-------------RPNTYFLLQ 143 (325)
T ss_pred EEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEE
Confidence 000110010 00 00 0 0001223469999999999999999999999973 344455544
Q ss_pred eCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 483 ANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 483 ~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
|+... .+.+.++||+-.+
T Consensus 144 t~~~~-------------~llpTI~SRC~~~ 161 (325)
T PRK06871 144 ADLSA-------------ALLPTIYSRCQTW 161 (325)
T ss_pred ECChH-------------hCchHHHhhceEE
Confidence 44333 7999999999444
No 244
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.90 E-value=9.6e-05 Score=75.78 Aligned_cols=224 Identities=19% Similarity=0.193 Sum_probs=117.4
Q ss_pred HHHhhcCCcccccHHHHHHHH--HHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCC
Q 005024 329 KLARSLAPEIYGHEDIKKALL--LLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSG 406 (718)
Q Consensus 329 ~l~~si~p~i~g~~~~k~~i~--~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~ 406 (718)
+|.---.|..+|+..++.++. ..|.......... ++||+|++|.|||++++...+.-|...- .+ .
T Consensus 27 RI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp--------~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~----~ 93 (302)
T PF05621_consen 27 RIAYIRADRWIGYPRAKEALDRLEELLEYPKRHRMP--------NLLIVGDSNNGKTMIIERFRRLHPPQSD-ED----A 93 (302)
T ss_pred HHHHHhcCCeecCHHHHHHHHHHHHHHhCCcccCCC--------ceEEecCCCCcHHHHHHHHHHHCCCCCC-CC----C
Confidence 334444688899999888765 3344332222222 7999999999999999999887654311 00 0
Q ss_pred CcceeeEeec-------------------ccccceee---e---cceEeeecCCeeeecccccC---ChHHHHHHHHhhc
Q 005024 407 VGLTAAVQRD-------------------NVTNEMVL---E---GGALVLADMGICAIDEFDKM---DESDRTAIHEVME 458 (718)
Q Consensus 407 ~~l~~~~~~~-------------------~~~g~~~~---~---~g~l~~a~~gil~iDEi~~~---~~~~~~~L~~~me 458 (718)
.....-.+.- ++...... + -..+..-.-.+++||||+.+ +...|...+.++.
T Consensus 94 ~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK 173 (302)
T PF05621_consen 94 ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK 173 (302)
T ss_pred ccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH
Confidence 0000000100 11000000 0 01111113458999999986 2333444444432
Q ss_pred ccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccC
Q 005024 459 QQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQN 538 (718)
Q Consensus 459 ~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~ 538 (718)
.= |. . -++.+|++..+.. ..-+.-++.|-+||+.+.+- .
T Consensus 174 ~L-------~N--e--L~ipiV~vGt~~A---------~~al~~D~QLa~RF~~~~Lp----~----------------- 212 (302)
T PF05621_consen 174 FL-------GN--E--LQIPIVGVGTREA---------YRALRTDPQLASRFEPFELP----R----------------- 212 (302)
T ss_pred HH-------hh--c--cCCCeEEeccHHH---------HHHhccCHHHHhccCCccCC----C-----------------
Confidence 10 00 1 1233444433321 01125678888999776531 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc---CCC-C-CHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHH
Q 005024 539 KESPALGFTPLEPAILRAYISAARRL---SPC-V-PRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALA 613 (718)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~~i~~~~~~---~p~-l-s~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A 613 (718)
...+.++.+-...+.+.. .|. + +++....|.+. ..|++-.+..++..|...|
T Consensus 213 --------W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~---------------s~G~iG~l~~ll~~aA~~A 269 (302)
T PF05621_consen 213 --------WELDEEFRRLLASFERALPLRKPSNLASPELARRIHER---------------SEGLIGELSRLLNAAAIAA 269 (302)
T ss_pred --------CCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH---------------cCCchHHHHHHHHHHHHHH
Confidence 112222222111222221 221 3 33444555442 4677888999999999999
Q ss_pred HhcCCCCccHHHHHHH
Q 005024 614 RLRFSETVAQSDVDEA 629 (718)
Q Consensus 614 ~l~~~~~V~~~dv~~a 629 (718)
--.+.+.||.+.+..+
T Consensus 270 I~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 270 IRSGEERITREILDKI 285 (302)
T ss_pred HhcCCceecHHHHhhC
Confidence 9999999999888753
No 245
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.86 E-value=1.3e-05 Score=70.62 Aligned_cols=99 Identities=18% Similarity=0.309 Sum_probs=56.2
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChH---
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES--- 448 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~--- 448 (718)
|+|+|+||+|||.+++.+++.+-.... ... . .....+.+...-| .|- ....++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~---~~~-~---~~vy~~~~~~~~w---~gY---~~q~vvi~DD~~~~~~~~~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIG---EPT-K---DSVYTRNPGDKFW---DGY---QGQPVVIIDDFGQDNDGYNY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhc---cCC-C---CcEEeCCCccchh---hcc---CCCcEEEEeecCccccccch
Confidence 579999999999999998876532210 000 0 0000111111111 111 12468999999988754
Q ss_pred -HHHHHHHhhcccEEEEeeCCeEE---EecCceEEEEEeC
Q 005024 449 -DRTAIHEVMEQQTVSIAKAGITT---SLNARTAVLSAAN 484 (718)
Q Consensus 449 -~~~~L~~~me~~~i~i~k~g~~~---~l~~~~~viaa~N 484 (718)
....|++++....+....++... .++ .-.||+|+|
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~-s~~vi~tsN 106 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLEDKGTPFN-SKLVIITSN 106 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHhhCCCccC-CCEEEEcCC
Confidence 56677888877666665444331 222 245667777
No 246
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00015 Score=81.28 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=94.2
Q ss_pred cccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCC---CCCcceeeEeecccccceeeecceEeeecCCeeeecc
Q 005024 365 KIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS---SGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 365 ~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
....+.-+||.|+||+|||++.+++|+.+...++...... ...+.+......-+.......+..+.+.+-.++-||-
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence 3445558999999999999999999999998877632211 0011111100000111222345556666667777776
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCC
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRAD 521 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~ 521 (718)
.+-..-..+..++..|+.-.. ..-..++.|+||++... ++|+.+.+-| ++-+..+.++
T Consensus 507 dgged~rl~~~i~~~ls~e~~--------~~~~~~~ivv~t~~s~~-------------~lp~~i~~~f-~~ei~~~~ls 564 (953)
T KOG0736|consen 507 DGGEDARLLKVIRHLLSNEDF--------KFSCPPVIVVATTSSIE-------------DLPADIQSLF-LHEIEVPALS 564 (953)
T ss_pred CCchhHHHHHHHHHHHhcccc--------cCCCCceEEEEeccccc-------------cCCHHHHHhh-hhhccCCCCC
Confidence 663333445556555551111 11124678999999887 7999999988 5556668888
Q ss_pred hhHHHHHHhhhhhhc
Q 005024 522 MDSDLEMARHVVYVH 536 (718)
Q Consensus 522 ~~~d~~i~~~il~~~ 536 (718)
+++..+|.+.+++.+
T Consensus 565 e~qRl~iLq~y~~~~ 579 (953)
T KOG0736|consen 565 EEQRLEILQWYLNHL 579 (953)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888888888777654
No 247
>PRK06526 transposase; Provisional
Probab=97.80 E-value=4.3e-06 Score=85.34 Aligned_cols=104 Identities=14% Similarity=0.251 Sum_probs=55.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC--hH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD--ES 448 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~--~~ 448 (718)
|++|+||||||||++|.+++..+-..-+...- .+...+..........+. .......+....+++|||++..+ +.
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f-~t~~~l~~~l~~~~~~~~--~~~~l~~l~~~dlLIIDD~g~~~~~~~ 176 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF-ATAAQWVARLAAAHHAGR--LQAELVKLGRYPLLIVDEVGYIPFEPE 176 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhh-hhHHHHHHHHHHHHhcCc--HHHHHHHhccCCEEEEcccccCCCCHH
Confidence 89999999999999999998765221010000 000001000000000010 00000112345799999999875 55
Q ss_pred HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCC
Q 005024 449 DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRY 490 (718)
Q Consensus 449 ~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~ 490 (718)
.+..|+++++... .+.++|.|+|...+.|
T Consensus 177 ~~~~L~~li~~r~-------------~~~s~IitSn~~~~~w 205 (254)
T PRK06526 177 AANLFFQLVSSRY-------------ERASLIVTSNKPFGRW 205 (254)
T ss_pred HHHHHHHHHHHHH-------------hcCCEEEEcCCCHHHH
Confidence 5667888886431 0124788899875444
No 248
>KOG2545 consensus Conserved membrane protein [Function unknown]
Probab=97.77 E-value=0.0039 Score=65.35 Aligned_cols=320 Identities=21% Similarity=0.237 Sum_probs=181.4
Q ss_pred EEeccccccccCCCCEEEEEEEEeeccCCC-ccccccccccceeeeeEEEEeeccccccccCChHHHHHHHHHhhChhHH
Q 005024 249 VHLRGELTRKVAPGDVVEFSGIFLPIPYTG-FRALRAGLVADTYLEAMSVTHFKKKYEEYELRGDEEEHISRLAEDGDIY 327 (718)
Q Consensus 249 v~l~~dlv~~~~pGd~V~v~GI~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (718)
|.+.++.--+++..|.|.+.||+...+.-. ....-+. ...-..+.+++.... ...+.++..+ .+++ +++.
T Consensus 203 VKvYe~~et~~qvnd~vdf~Gilsvdp~la~ld~ld~~--~~ae~qa~hvq~lqh---~nPllp~ilr--~el~--~~Ll 273 (543)
T KOG2545|consen 203 VKVYEGMETKVQVNDAVDFIGILSVDPELASLDGLDCL--HMAEFQAYHVQALQH---PNPLLPEILR--KELR--PKLL 273 (543)
T ss_pred EEEecCcccceehhhhhhhheeeecChhhhcCCCcccc--cHHHHHHHHHhccCC---CCccchHHHH--HHhh--HHHH
Confidence 556666656699999999999998764320 0000000 000111122221111 1112222221 1222 2222
Q ss_pred HHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcc--hHHHHHHHHHHHCCCceeecCCCCC
Q 005024 328 NKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGV--AKSQLLKHIINVAPRGVYTTGRGSS 405 (718)
Q Consensus 328 ~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGt--GKt~la~~i~~~~~~~~~~~~~~~~ 405 (718)
.-+---+.|...+-.-+++.|++.+... .+|. .-|...+=|+|=|-- --|+|-..+-.++|.+++..-..
T Consensus 274 ----kylt~~Lg~d~iAAeyLllhLlStV~~R-~d~l-~iGkftlNL~ncpkes~f~tqLy~iL~~Llpas~~~pmti-- 345 (543)
T KOG2545|consen 274 ----KYLTKVLGNDNIAAEYLLLHLLSTVYHR-TDGL-VIGKFTLNLTNCPKESIFVTQLYSILRPLLPASVIQPMTI-- 345 (543)
T ss_pred ----HHHHHhhcCchHHHHHHHHHHHHHhhcc-ccce-EeeeeEEeecCCCchhHHHHHHHHHHHHhchhhheeeeeH--
Confidence 2222223334445556777777655321 1111 122234445554433 44566677777777775542111
Q ss_pred CCcceee---EeecccccceeeecceEeeecCCeeeecccccCC-------hHHHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 406 GVGLTAA---VQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD-------ESDRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 406 ~~~l~~~---~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~-------~~~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
..|... ..+| -+.-.+.+|.+-+|+|-.++|||-..-+ -.....|-..+++|.+...-......+++
T Consensus 346 -e~lNta~f~PkkD--yetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~ 422 (543)
T KOG2545|consen 346 -EELNTAPFYPKKD--YETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHS 422 (543)
T ss_pred -HhhcccCcccccc--ccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEecc
Confidence 111111 1122 1233578899999999999999975322 22345677888888887654455667788
Q ss_pred ceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHH
Q 005024 476 RTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILR 555 (718)
Q Consensus 476 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~ 555 (718)
++.++..+. ||- -+|..+-=|.+ |+.. ..-+...|-+....+
T Consensus 423 nv~vlIlSe---Grs----------ilPADl~i~lq--------p~~v-----------------~~le~~tps~l~q~r 464 (543)
T KOG2545|consen 423 NVRVLILSE---GRS----------ILPADLGIRLQ--------PDSV-----------------DTLEFPTPSDLLQFR 464 (543)
T ss_pred CceEEEeeC---Ccc----------cCcccccccCC--------CCCC-----------------CccccCChhHHHHHH
Confidence 888887775 332 34443221221 0000 000122344566778
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 556 AYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 556 ~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
.|+..++...-.++++..+++.+-|+.+|+.. ...+...|-.++-.|+.++.-.++.+++.+|-..|.++.
T Consensus 465 cyltt~r~l~~nIsee~t~~iq~dfV~mRq~n-------~~snaddLs~lLv~sRlls~S~G~ttlsre~wq~a~ele 535 (543)
T KOG2545|consen 465 CYLTTMRNLRANISEEMTDYIQSDFVSMRQYN-------KESNADDLSLLLVCSRLLSKSFGRTTLSREDWQAARELE 535 (543)
T ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhhC-------cccchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 88888888777899999999999999999975 234467788888888888888899999999999988764
No 249
>PRK12377 putative replication protein; Provisional
Probab=97.77 E-value=2e-06 Score=87.09 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=64.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeeccccc--CChH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDK--MDES 448 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~--~~~~ 448 (718)
+++|+|+||||||+||.+++..+...-+.. ...+...+... .+..+..........-.+..-.+|+|||++. .++.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v-~~i~~~~l~~~-l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~ 180 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSV-IVVTVPDVMSR-LHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKN 180 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCe-EEEEHHHHHHH-HHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHH
Confidence 799999999999999999998873210000 00000011100 0000000000000001123567999999954 5666
Q ss_pred HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhccc
Q 005024 449 DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 449 ~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
.+..|+++++... .....+|.|+|.....+.. .+..+++||.
T Consensus 181 ~~~~l~~ii~~R~------------~~~~ptiitSNl~~~~l~~--------~~~~ri~dRl 222 (248)
T PRK12377 181 EQVVLNQIIDRRT------------ASMRSVGMLTNLNHEAMST--------LLGERVMDRM 222 (248)
T ss_pred HHHHHHHHHHHHH------------hcCCCEEEEcCCCHHHHHH--------HhhHHHHHHH
Confidence 7888999987642 1234567789976432210 3566778876
No 250
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00026 Score=75.11 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=42.4
Q ss_pred cCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccce
Q 005024 433 DMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDL 512 (718)
Q Consensus 433 ~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdl 512 (718)
...|++||+.++|+....++|+..||+- |.++.+|.+|+... .+.+.++||+-.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~-------------~LLpTI~SRcq~ 185 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSARID-------------RLLPTILSRCRQ 185 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEECChh-------------hCcHHHHhcCEE
Confidence 3459999999999999999999999962 34555555555443 799999999943
Q ss_pred E
Q 005024 513 L 513 (718)
Q Consensus 513 i 513 (718)
+
T Consensus 186 i 186 (342)
T PRK06964 186 F 186 (342)
T ss_pred E
Confidence 3
No 251
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.72 E-value=0.00026 Score=79.15 Aligned_cols=82 Identities=24% Similarity=0.281 Sum_probs=50.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEee---ecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVL---ADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~---a~~gil~iDEi~~~~~ 447 (718)
=+||+||||.|||+||+-||+.++.++..... +. .=++..++....+..... -++ .....++|||||-.+.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINA--SD-eRt~~~v~~kI~~avq~~---s~l~adsrP~CLViDEIDGa~~ 401 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA--SD-ERTAPMVKEKIENAVQNH---SVLDADSRPVCLVIDEIDGAPR 401 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEecc--cc-cccHHHHHHHHHHHHhhc---cccccCCCcceEEEecccCCcH
Confidence 37899999999999999999998766543211 11 111222222111111000 011 2345899999999998
Q ss_pred HHHHHHHHhhc
Q 005024 448 SDRTAIHEVME 458 (718)
Q Consensus 448 ~~~~~L~~~me 458 (718)
.....|+..++
T Consensus 402 ~~Vdvilslv~ 412 (877)
T KOG1969|consen 402 AAVDVILSLVK 412 (877)
T ss_pred HHHHHHHHHHH
Confidence 88888887776
No 252
>PRK08181 transposase; Validated
Probab=97.66 E-value=1.5e-05 Score=81.87 Aligned_cols=117 Identities=20% Similarity=0.316 Sum_probs=63.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc----eeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG----VYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
|++|+||||||||+|+.+++..+-.. .|.. ...+..........+ ......-.+..-.+++|||++..+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----~~~L~~~l~~a~~~~--~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----TTDLVQKLQVARREL--QLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----HHHHHHHHHHHHhCC--cHHHHHHHHhcCCEEEEecccccc
Confidence 89999999999999999998765211 1111 001111000000000 000000012345699999999875
Q ss_pred hH--HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhccc
Q 005024 447 ES--DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 447 ~~--~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
.+ .+..|+++++... + +.++|.|+|...+.|... .....+..+++||.
T Consensus 181 ~~~~~~~~Lf~lin~R~------~-------~~s~IiTSN~~~~~w~~~---~~D~~~a~aildRL 230 (269)
T PRK08181 181 KDQAETSVLFELISARY------E-------RRSILITANQPFGEWNRV---FPDPAMTLAAVDRL 230 (269)
T ss_pred CCHHHHHHHHHHHHHHH------h-------CCCEEEEcCCCHHHHHHh---cCCccchhhHHHhh
Confidence 43 4567888887431 0 135788899875444210 00113567778876
No 253
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00016 Score=75.98 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---eeecCCCCCC----Ccc-eeeE
Q 005024 342 EDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---VYTTGRGSSG----VGL-TAAV 413 (718)
Q Consensus 342 ~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~~~~~~~~~~----~~l-~~~~ 413 (718)
......+..++..|... . -+||.||.|+||+.+|+++++.+--. .-.||.-.+- .|- +.-.
T Consensus 9 ~~~~~~l~~~~~~~rl~---h--------A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIP---G--------ALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHHHcCCcc---e--------eEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE
Confidence 34455555566555322 1 58899999999999999999876211 0112221100 000 0000
Q ss_pred eeccc-ccc-ee---eec------ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEE
Q 005024 414 QRDNV-TNE-MV---LEG------GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSA 482 (718)
Q Consensus 414 ~~~~~-~g~-~~---~~~------g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa 482 (718)
.-.+. .|. .. ++. ..-..+...|++||+.++|+....++|+..+|+- |.++.+|-.
T Consensus 78 ~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~ 144 (319)
T PRK06090 78 VIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLV 144 (319)
T ss_pred EEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEE
Confidence 00110 010 00 000 0111233469999999999999999999999973 344555554
Q ss_pred eCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 483 ANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 483 ~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
|+... .+.+.+.||+-.+
T Consensus 145 t~~~~-------------~lLpTI~SRCq~~ 162 (319)
T PRK06090 145 THNQK-------------RLLPTIVSRCQQW 162 (319)
T ss_pred ECChh-------------hChHHHHhcceeE
Confidence 44333 6899999999544
No 254
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.50 E-value=0.002 Score=72.35 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
-+||.||||+|||++++.+++.+...+
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 488899999999999999999985543
No 255
>PRK08116 hypothetical protein; Validated
Probab=97.47 E-value=5e-05 Score=78.38 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=55.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC---c-eeecCCCCCCCcceeeEeeccccc--ceeeecceEeeecCCeeeeccc--
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR---G-VYTTGRGSSGVGLTAAVQRDNVTN--EMVLEGGALVLADMGICAIDEF-- 442 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~---~-~~~~~~~~~~~~l~~~~~~~~~~g--~~~~~~g~l~~a~~gil~iDEi-- 442 (718)
.++|+|+||||||+||.++++.+.. . +|.+. ..+... .+..+.+ ......-.-.+.+..+|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~-----~~ll~~-i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF-----PQLLNR-IKSTYKSSGKEDENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-----HHHHHH-HHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence 5999999999999999999987621 1 11110 011000 0000000 0000000001234579999999
Q ss_pred ccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 443 DKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 443 ~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
+..++..+..|+++++... .....+|.|+|..
T Consensus 190 e~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~ 221 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSRY------------RKGLPTIVTTNLS 221 (268)
T ss_pred CCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence 4566777888888887531 1223578888865
No 256
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.00016 Score=76.66 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=41.6
Q ss_pred ecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc
Q 005024 432 ADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD 511 (718)
Q Consensus 432 a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd 511 (718)
+...|++||+++.|++..+++|+..||+.. ..+.+|.+++... .+++.+.||+-
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-------------~~~~~Ilvth~~~-------------~ll~ti~SRc~ 165 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPP-------------PQVVFLLVSHAAD-------------KVLPTIKSRCR 165 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCc-------------CCCEEEEEeCChH-------------hChHHHHHHhh
Confidence 345699999999999999999999998641 2244444554433 68899999994
Q ss_pred eE
Q 005024 512 LL 513 (718)
Q Consensus 512 li 513 (718)
.+
T Consensus 166 ~~ 167 (325)
T PRK08699 166 KM 167 (325)
T ss_pred hh
Confidence 43
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.42 E-value=1.4e-05 Score=81.63 Aligned_cols=101 Identities=22% Similarity=0.331 Sum_probs=55.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCC---CCCcceeeEeecccccceeeecceEe-eecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS---SGVGLTAAVQRDNVTNEMVLEGGALV-LADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~~~~~~g~l~-~a~~gil~iDEi~~~~ 446 (718)
+++|+|+||||||+||-+++..+-.. |... +..++... ++..... ...+.-... +.+-.+|+|||+...+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~----g~sv~f~~~~el~~~-Lk~~~~~-~~~~~~l~~~l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKA----GISVLFITAPDLLSK-LKAAFDE-GRLEEKLLRELKKVDLLIIDDIGYEP 180 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEEHHHHHHH-HHHHHhc-CchHHHHHHHhhcCCEEEEecccCcc
Confidence 89999999999999999999876321 1100 00011000 0110000 000000011 3345799999999865
Q ss_pred hH--HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCC
Q 005024 447 ES--DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRY 490 (718)
Q Consensus 447 ~~--~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~ 490 (718)
.+ ..+.+++++.+..-+ +.. +.|+|...+.+
T Consensus 181 ~~~~~~~~~~q~I~~r~~~------------~~~-~~tsN~~~~~~ 213 (254)
T COG1484 181 FSQEEADLLFQLISRRYES------------RSL-IITSNLSFGEW 213 (254)
T ss_pred CCHHHHHHHHHHHHHHHhh------------ccc-eeecCCChHHH
Confidence 44 467777777653221 222 77899886555
No 258
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.40 E-value=0.0013 Score=71.50 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.9
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCc
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
+||+||+|+|||+.++-+++.+...
T Consensus 113 LLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHhhCce
Confidence 8899999999999999999998654
No 259
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.0012 Score=60.73 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.5
Q ss_pred cceeeecCCCcchHHHHHHHHHHHCCC
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.+.+++.|+||+|||+++..++..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 348999999999999999999987744
No 260
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.27 E-value=3.3e-05 Score=81.71 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=61.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc----eeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccC-
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG----VYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKM- 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~- 445 (718)
+++|+|+||||||+|+.+++..+-.. .|.+. ..+........+..........-.+.+-.+|+|||++..
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~-----~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA-----DELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH-----HHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence 89999999999999999999876221 11110 011100000000000000000011224479999999765
Q ss_pred -ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhccc
Q 005024 446 -DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 446 -~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
++..+..|+++++... ..+..+|.|+|-....+. -.+++.+.||+
T Consensus 260 ~t~~~~~~Lf~iin~R~------------~~~k~tIiTSNl~~~el~--------~~~~eri~SRL 305 (329)
T PRK06835 260 ITEFSKSELFNLINKRL------------LRQKKMIISTNLSLEELL--------KTYSERISSRL 305 (329)
T ss_pred CCHHHHHHHHHHHHHHH------------HCCCCEEEECCCCHHHHH--------HHHhHHHHHHH
Confidence 4556778888886531 112346778886532220 02456677765
No 261
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=97.27 E-value=0.0038 Score=68.20 Aligned_cols=183 Identities=19% Similarity=0.216 Sum_probs=109.8
Q ss_pred CCeeeecccccC----Ch----HHHHHHHHhhcccEEEEeeCCeE-EEe-cCceEEEEEeCCCC--CCCCCCCCcchhcC
Q 005024 434 MGICAIDEFDKM----DE----SDRTAIHEVMEQQTVSIAKAGIT-TSL-NARTAVLSAANPAW--GRYDLRRTPAENIN 501 (718)
Q Consensus 434 ~gil~iDEi~~~----~~----~~~~~L~~~me~~~i~i~k~g~~-~~l-~~~~~viaa~Np~~--g~~~~~~~~~~~~~ 501 (718)
+..++-||+..+ .. .....|+++-+.+.+++.+.+.. ..+ ++.+++++++.|.. ..+-. .....-
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~~---~~~~~~ 226 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREILS---AEDPEF 226 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHhh---hhcccc
Confidence 447888998754 22 45677888888888877665533 333 47899999999872 11100 000012
Q ss_pred CChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh---c-------CC---CC
Q 005024 502 LPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR---L-------SP---CV 568 (718)
Q Consensus 502 l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~---~-------~p---~l 568 (718)
...-|++|| | |.+.+..... .. ......+.+.+.+..|-..... . .| .+
T Consensus 227 ~~~Gll~Rf-L-~~~p~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~l 288 (378)
T PF13148_consen 227 RGDGLLARF-L-FVIPDSRKGR-RF---------------EFPVPEPIDDEALEAYHERIKELLDWPPEDGSDEPIVLEL 288 (378)
T ss_pred cCCChHhhe-e-eeccCccccc-cc---------------ccCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCeEEec
Confidence 567899999 6 4332211110 00 0001111223333333332221 1 12 48
Q ss_pred CHHHHHHHHHHHHHhhHhhhh-cCCC-CcccCHHHHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHhhhc
Q 005024 569 PRELEEYIAAAYSNIRQEEAK-SNTP-HSYTTVRTLLSILRISAALARLR-----FSETVAQSDVDEALRLMQMSK 637 (718)
Q Consensus 569 s~~~~~~l~~~y~~lr~~~~~-~~~~-~~~~s~R~l~~lirla~a~A~l~-----~~~~V~~~dv~~ai~l~~~~~ 637 (718)
+++|.+.+.++|..+...... .... -...-.|....++|+|..++-++ ....|+.+++..|+.++....
T Consensus 289 s~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~ 364 (378)
T PF13148_consen 289 SDEAKELFREWYNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFL 364 (378)
T ss_pred CHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHH
Confidence 999999999999988876421 1111 12233467788899999999888 777899999999999987653
No 262
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.27 E-value=0.00034 Score=66.80 Aligned_cols=23 Identities=48% Similarity=0.823 Sum_probs=20.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
|++|.|+||+|||++++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999888877
No 263
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.004 Score=65.02 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=66.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce---eecCCCCCCCcceeeEeeccccccee----------eecceEeeecCCee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV---YTTGRGSSGVGLTAAVQRDNVTNEMV----------LEGGALVLADMGIC 437 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~g~~~----------~~~g~l~~a~~gil 437 (718)
-.||+|+.|+||+.+++.+++.+--.. ...+..+. ..... ++..+... +.-.++..++..|+
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~----n~~~~-d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kvv 94 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPA----NIILF-DIFDKDLSKSEFLSAINKLYFSSFVQSQKKIL 94 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCc----ceEEe-ccCCCcCCHHHHHHHHHHhccCCcccCCceEE
Confidence 356999999999999999998861100 00000000 00001 10000000 00001111356799
Q ss_pred eecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 438 AIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 438 ~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
+||+.++|+...+++|+..||+- |..+.+|-.++... .+.+++.||+-.+
T Consensus 95 II~~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~~~~-------------kll~TI~SRc~~~ 144 (299)
T PRK07132 95 IIKNIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTKNIN-------------KVLPTIVSRCQVF 144 (299)
T ss_pred EEecccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChH-------------hChHHHHhCeEEE
Confidence 99999999999999999999962 44555665454222 6888999999444
No 264
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.22 E-value=0.00025 Score=69.47 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=67.2
Q ss_pred cceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES 448 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~ 448 (718)
+.-++|+|+-|+|||++.+.+... .|+...... ..++.. ..+...-++.|||++.+...
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------------~~kd~~-----~~l~~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------------DDKDFL-----EQLQGKWIVELDELDGLSKK 110 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHH----hccCccccC------------CCcHHH-----HHHHHhHheeHHHHhhcchh
Confidence 346889999999999999988433 232221100 001100 11223458899999999999
Q ss_pred HHHHHHHhhcccEEEEee--CCeEEEecCceEEEEEeCCCC
Q 005024 449 DRTAIHEVMEQQTVSIAK--AGITTSLNARTAVLSAANPAW 487 (718)
Q Consensus 449 ~~~~L~~~me~~~i~i~k--~g~~~~l~~~~~viaa~Np~~ 487 (718)
..+.|-..+...+..+.+ +.....+|-+++++||+|...
T Consensus 111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~ 151 (198)
T PF05272_consen 111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDD 151 (198)
T ss_pred hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcc
Confidence 999999999877776543 344577888999999999763
No 265
>PRK09183 transposase/IS protein; Provisional
Probab=97.19 E-value=7.3e-05 Score=76.78 Aligned_cols=117 Identities=22% Similarity=0.334 Sum_probs=60.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC---ce-eecCCCCCCCcceeeEeecccccce--eeecceEeeecCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR---GV-YTTGRGSSGVGLTAAVQRDNVTNEM--VLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~---~~-~~~~~~~~~~~l~~~~~~~~~~g~~--~~~~g~l~~a~~gil~iDEi~~ 444 (718)
|++|+||||||||+|+.+++..+.. .+ |... ..+..........+.. .+.. ......+++|||++.
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~-----~~l~~~l~~a~~~~~~~~~~~~---~~~~~dlLiiDdlg~ 175 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA-----ADLLLQLSTAQRQGRYKTTLQR---GVMAPRLLIIDEIGY 175 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH-----HHHHHHHHHHHHCCcHHHHHHH---HhcCCCEEEEccccc
Confidence 8999999999999999999766421 11 1110 0010000000000100 0000 012346999999997
Q ss_pred CCh--HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhccc
Q 005024 445 MDE--SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 445 ~~~--~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
.+. .....|+++++... + +.++|.|+|...+.|...- ...-.+..+++||.
T Consensus 176 ~~~~~~~~~~lf~li~~r~------~-------~~s~iiTsn~~~~~w~~~~--~~d~~~~~ai~dRl 228 (259)
T PRK09183 176 LPFSQEEANLFFQVIAKRY------E-------KGSMILTSNLPFGQWDQTF--AGDAALTSAMLDRL 228 (259)
T ss_pred CCCChHHHHHHHHHHHHHH------h-------cCcEEEecCCCHHHHHHHh--cCchhHHHHHHHHH
Confidence 543 44556888876421 0 1246788998855542110 01113445677765
No 266
>PRK06921 hypothetical protein; Provisional
Probab=97.15 E-value=6.2e-05 Score=77.53 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=22.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
+++|+|+||||||+|+.+++..+.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999998763
No 267
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.15 E-value=0.00022 Score=71.90 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=76.8
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCC
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSG 406 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~ 406 (718)
++.|...+.-.++||..++..|..++.+--.... -+.+.-+=|.|.|||||+..++.|++.+- ..|..+..
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~----~~Gl~S~~ 143 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLY----RGGLRSPF 143 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHH----hccccchh
Confidence 3455566677889999999888877754321111 12333566899999999999999998863 33443332
Q ss_pred CcceeeEeecccc---cce-----eeecceEeeecCCeeeecccccCChHHHHHHHHhhcc
Q 005024 407 VGLTAAVQRDNVT---NEM-----VLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQ 459 (718)
Q Consensus 407 ~~l~~~~~~~~~~---g~~-----~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~ 459 (718)
+....+..--|.. ..+ ..-.|........++++||.|+|++.....|...++.
T Consensus 144 V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdy 204 (344)
T KOG2170|consen 144 VHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDY 204 (344)
T ss_pred HHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcc
Confidence 2221110000000 000 0112333344678999999999999999999998874
No 268
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.0019 Score=66.67 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=66.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc--eee-----cCCCCCCCcceeeEeecc----c--------ccceeeecceEee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG--VYT-----TGRGSSGVGLTAAVQRDN----V--------TNEMVLEGGALVL 431 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~--~~~-----~~~~~~~~~l~~~~~~~~----~--------~g~~~~~~g~l~~ 431 (718)
..||+||+|+||+.+|.++++.+--. ... .|..+. +.. +..+. . .......+ ..
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD---~~~-i~p~~~~~~I~idqiR~l~~~~~~~p---~e 93 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD---IHE-FSPQGKGRLHSIETPRAIKKQIWIHP---YE 93 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC---EEE-EecCCCCCcCcHHHHHHHHHHHhhCc---cC
Confidence 57799999999999999999876210 000 011111 100 00000 0 00001111 12
Q ss_pred ecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEE-EEEeCCCCCCCCCCCCcchhcCCChhhhccc
Q 005024 432 ADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAV-LSAANPAWGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 432 a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v-iaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
+...|++||+.++|+.+.+++|+..||+- |.++.+ +.|.|+. .+.+.++||+
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEP-------------p~~~~fiL~~~~~~--------------~ll~TI~SRc 146 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDP-------------PQHGVIILTSAKPQ--------------RLPPTIRSRS 146 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcC-------------CCCeEEEEEeCChh--------------hCcHHHHhcc
Confidence 34569999999999999999999999963 334444 4445544 6999999999
Q ss_pred ceEE
Q 005024 511 DLLW 514 (718)
Q Consensus 511 dli~ 514 (718)
-.+.
T Consensus 147 q~~~ 150 (290)
T PRK05917 147 LSIH 150 (290)
T ss_pred eEEE
Confidence 5554
No 269
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00086 Score=74.83 Aligned_cols=143 Identities=17% Similarity=0.230 Sum_probs=74.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeeccccccee-eecceEeeecCCeeeecccccCCh--
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMV-LEGGALVLADMGICAIDEFDKMDE-- 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~-~~~g~l~~a~~gil~iDEi~~~~~-- 447 (718)
||||.||+|+|||.|++++++......+.--...+...+.+..+ +.+..-+. +-.-++ .-...|++||++|.+-.
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~-e~iQk~l~~vfse~~-~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL-EKIQKFLNNVFSEAL-WYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH-HHHHHHHHHHHHHHH-hhCCcEEEEcchhhhhccC
Confidence 89999999999999999999987533110000000000111000 00000000 000000 01246899999987632
Q ss_pred -------HHH-HHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEec
Q 005024 448 -------SDR-TAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLIL 517 (718)
Q Consensus 448 -------~~~-~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~ 517 (718)
..+ ..|..++.|- + -+..+.+..+.+||+.+... .+++-|.+ +|+....+
T Consensus 511 ~~e~~q~~~~~~rla~flnqv-i-----~~y~~~~~~ia~Iat~qe~q-------------tl~~~L~s~~~Fq~~~~L- 570 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQV-I-----KIYLKRNRKIAVIATGQELQ-------------TLNPLLVSPLLFQIVIAL- 570 (952)
T ss_pred cccCCcchHHHHHHHHHHHHH-H-----HHHHccCcEEEEEEechhhh-------------hcChhhcCccceEEEEec-
Confidence 111 1222222111 0 11123345578999998664 34444443 88777665
Q ss_pred cCCChhHHHHHHhhhhhh
Q 005024 518 DRADMDSDLEMARHVVYV 535 (718)
Q Consensus 518 d~~~~~~d~~i~~~il~~ 535 (718)
..|+.....+|.++++..
T Consensus 571 ~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSK 588 (952)
T ss_pred CCcchhHHHHHHHHHHHh
Confidence 677777788888877654
No 270
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.09 E-value=0.015 Score=59.61 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=61.4
Q ss_pred CCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhc-------CCCCCHHHH
Q 005024 501 NLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRL-------SPCVPRELE 573 (718)
Q Consensus 501 ~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-------~p~ls~~~~ 573 (718)
.+.+||+||+-++ . +.+++.+.+.+.+..+-.. ...+++++.
T Consensus 22 ~vn~ALlSR~~v~-~------------------------------l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al 70 (300)
T PRK14700 22 YLNDALVSRLFIL-R------------------------------LKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLY 70 (300)
T ss_pred eecHhhhhhhhee-e------------------------------ecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHH
Confidence 8999999999444 3 3557777777777666431 235899999
Q ss_pred HHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 574 EYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 574 ~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+.|... ..|++|.+.+++.+|...+.-.....||.+++.+++.
T Consensus 71 ~~ia~~---------------a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~ 113 (300)
T PRK14700 71 NAMHNY---------------NEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVG 113 (300)
T ss_pred HHHHHh---------------cCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHh
Confidence 999985 6899999999999976433111112389999988774
No 271
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.08 E-value=0.00059 Score=60.74 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=45.1
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHC
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|...+...++||..++..++-++.+--.... -+.++-+-|.|+||||||.+++.||+.+
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~-----p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPN-----PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-----CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3456677778999999998888877754321111 1223356689999999999999999885
No 272
>PHA02774 E1; Provisional
Probab=96.98 E-value=0.0055 Score=68.29 Aligned_cols=97 Identities=19% Similarity=0.200 Sum_probs=57.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC-hHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD-ESD 449 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~-~~~ 449 (718)
+++|+||||||||+++.++.+.+.-.+... + +. ...|-+. .+++..+++|||+-.-- .-.
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~vi~f-------------v-N~-~s~FwLq----pl~d~ki~vlDD~t~~~w~y~ 496 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKVISF-------------V-NS-KSHFWLQ----PLADAKIALLDDATHPCWDYI 496 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEE-------------E-EC-ccccccc----hhccCCEEEEecCcchHHHHH
Confidence 799999999999999999999874221110 0 00 1112222 24466799999993221 222
Q ss_pred HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 450 RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 450 ~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
...|..+|+-..+.+.+......--...-+|.|+|..
T Consensus 497 d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d 533 (613)
T PHA02774 497 DTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNID 533 (613)
T ss_pred HHHHHHHcCCCcceeeecccCcccccCCCEEEecCCC
Confidence 3457778887767765332221111234467789966
No 273
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.98 E-value=0.00022 Score=72.13 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=61.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---eeecCCCCCCCcceeeEeeccc-ccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VYTTGRGSSGVGLTAAVQRDNV-TNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~-~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
+++|.|+||||||+|+.+++..+... +... +...+... .+..+ ........-.-.+..-.+|+|||++...
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i----t~~~l~~~-l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLII----TVADIMSA-MKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT 175 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE----EHHHHHHH-HHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC
Confidence 79999999999999999999886321 1100 00111100 00000 0000000000012345699999999875
Q ss_pred hH--HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhccc
Q 005024 447 ES--DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 447 ~~--~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
.. ....|+++++.+. ..+..+|.|+|.....+. -.+...++||.
T Consensus 176 ~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~~~~l~--------~~~g~ri~sRl 221 (244)
T PRK07952 176 ESRYEKVIINQIVDRRS------------SSKRPTGMLTNSNMEEMT--------KLLGERVMDRM 221 (244)
T ss_pred CCHHHHHHHHHHHHHHH------------hCCCCEEEeCCCCHHHHH--------HHhChHHHHHH
Confidence 44 3456778886431 123456778887632221 03556677776
No 274
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.97 E-value=0.0021 Score=63.80 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=108.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce----eecCCCCCCCcceeeEeecccc-cceeee-------cceEeee----cC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV----YTTGRGSSGVGLTAAVQRDNVT-NEMVLE-------GGALVLA----DM 434 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~-g~~~~~-------~g~l~~a----~~ 434 (718)
-+.++|+-|+|||.+.|++....+... +......+..++...+.-+-.+ ..|... .+...+. .+
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 488999999999999998777775441 2222222222222111111000 111111 0111111 12
Q ss_pred CeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCC-CCCCCCcchhcCCChhhhcccceE
Q 005024 435 GICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGR-YDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 435 gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~-~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
-++++||.+.+..+....|...++--. ......+++-...|.-.. . ...--..+-.|+++-
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl~~----------~~~~~l~ivL~Gqp~L~~~l--------r~~~l~e~~~R~~ir 194 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNLEE----------DSSKLLSIVLIGQPKLRPRL--------RLPVLRELEQRIDIR 194 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhhcc----------cccCceeeeecCCcccchhh--------chHHHHhhhheEEEE
Confidence 488999999999988887766654110 001113334334443100 0 000112333477664
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH----HHhcCCCCCHHHHHHHHHHHHHhhHhhhh
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA----ARRLSPCVPRELEEYIAAAYSNIRQEEAK 589 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~~~p~ls~~~~~~l~~~y~~lr~~~~~ 589 (718)
+. .+|++.+....|+.. +....|.+++++...+...
T Consensus 195 ~~------------------------------l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~---------- 234 (269)
T COG3267 195 IE------------------------------LPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEA---------- 234 (269)
T ss_pred Ee------------------------------cCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHH----------
Confidence 32 355666656666654 3335678999999888763
Q ss_pred cCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 005024 590 SNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD 627 (718)
Q Consensus 590 ~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 627 (718)
..+.||....+...|.-.|...+++.|+...+.
T Consensus 235 -----sqg~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 235 -----SQGIPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred -----hccchHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 456789999999999999988888888876654
No 275
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.90 E-value=0.022 Score=60.17 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=68.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeeccccc-ceeeecceEeeecCCeeeecccccCChHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTN-EMVLEGGALVLADMGICAIDEFDKMDESD 449 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~~~~g~l~~a~~gil~iDEi~~~~~~~ 449 (718)
=++|+|+.|+|||++++.+..+++....+ .. +...+. ...+ .+.+ ..+...-+++.||+..-....
T Consensus 78 ~~~l~G~g~nGKStl~~~l~~l~G~~~~~--~~-~~~~~~------~~~~~~f~~----a~l~gk~l~~~~E~~~~~~~~ 144 (304)
T TIGR01613 78 LFFLYGNGGNGKSTFQNLLSNLLGDYATT--AV-ASLKMN------EFQEHRFGL----ARLEGKRAVIGDEVQKGYRDD 144 (304)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhChhhcc--CC-cchhhh------hccCCCchh----hhhcCCEEEEecCCCCCcccc
Confidence 58899999999999999999987643210 00 000010 0111 1111 112234478889997543333
Q ss_pred HHHHHHhhcccEEEEeeCC-eEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhccc
Q 005024 450 RTAIHEVMEQQTVSIAKAG-ITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 450 ~~~L~~~me~~~i~i~k~g-~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
.+.|-.+.....+++.+.+ ........+.+|.++|....-- .-+.++.+|+
T Consensus 145 ~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~----------~~~~a~~RR~ 196 (304)
T TIGR01613 145 ESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR----------GFDGGIKRRL 196 (304)
T ss_pred HHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC----------CCChhheeeE
Confidence 4555555555666665333 2445666788999999664221 3567888998
No 276
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.0012 Score=64.27 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=24.0
Q ss_pred cceeeecCCCcchHHHHHHHHHHHCCC
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
+.|.|+.||||+|||+++|-+++.+..
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhc
Confidence 348999999999999999999998743
No 277
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.80 E-value=0.00014 Score=66.28 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=19.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++++|+||+|||.+++.+++..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999876
No 278
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.017 Score=59.95 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=42.8
Q ss_pred cCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccce
Q 005024 433 DMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDL 512 (718)
Q Consensus 433 ~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdl 512 (718)
...|++||+.++|++...++|+..+|+- |.++.+|-.|+... .+.+.+.||+-.
T Consensus 104 ~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~-------------~lLpTI~SRcq~ 157 (290)
T PRK07276 104 KQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDEN-------------KVLPTIKSRTQI 157 (290)
T ss_pred CcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh-------------hCchHHHHccee
Confidence 4569999999999999999999999963 33455555454333 689999999955
Q ss_pred EE
Q 005024 513 LW 514 (718)
Q Consensus 513 i~ 514 (718)
+.
T Consensus 158 i~ 159 (290)
T PRK07276 158 FH 159 (290)
T ss_pred ee
Confidence 44
No 279
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.0062 Score=61.58 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=67.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC--CceeecCCCCCC--------Ccceee-Eeeccccc-ce-----eeecceEeeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP--RGVYTTGRGSSG--------VGLTAA-VQRDNVTN-EM-----VLEGGALVLAD 433 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~--~~~~~~~~~~~~--------~~l~~~-~~~~~~~g-~~-----~~~~g~l~~a~ 433 (718)
..||+|++|+||..+|.++++.+- ...-.||.-.+- .++... ....+..- +. .+...+...+.
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~~ 88 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNG 88 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcCC
Confidence 589999999999999999887761 111112221110 011100 00000000 00 00000111123
Q ss_pred CCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
..|++||++++|+....++|+..+|+- |.++.+|-.++... .+.+.+.||+-.+
T Consensus 89 ~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~~~~-------------~lLpTI~SRCq~~ 142 (261)
T PRK05818 89 KKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTRNEN-------------NILNTILSRCVQY 142 (261)
T ss_pred CEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEECChH-------------hCchHhhhheeee
Confidence 469999999999999999999999973 34455555555433 7999999999443
No 280
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.29 E-value=0.0028 Score=62.34 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=45.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC---Cceeec-CCCCCCC------cceeeEeeccccccee--eecceEeeecCCeee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP---RGVYTT-GRGSSGV------GLTAAVQRDNVTNEMV--LEGGALVLADMGICA 438 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~---~~~~~~-~~~~~~~------~l~~~~~~~~~~g~~~--~~~g~l~~a~~gil~ 438 (718)
-.++.|+||||||++++.+...+. ..+... -.+.... +..+.-+ ...-.... ...+........+++
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti-~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTI-HSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEH-HHHTTEECCEECCSSCC-TSTSEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhH-HHHHhcCCcccccccccCCcccEEE
Confidence 367789999999999998876652 222211 1100000 1111000 00000000 000000133456999
Q ss_pred ecccccCChHHHHHHHHhhcc
Q 005024 439 IDEFDKMDESDRTAIHEVMEQ 459 (718)
Q Consensus 439 iDEi~~~~~~~~~~L~~~me~ 459 (718)
|||..+++......|++....
T Consensus 99 VDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 99 VDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp ESSGGG-BHHHHHHHHHHS-T
T ss_pred EecccccCHHHHHHHHHHHHh
Confidence 999999999988888888865
No 281
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.26 E-value=0.002 Score=69.22 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=23.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.+.|+|++|+|||+|+-.....+|.
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCc
Confidence 6999999999999999999988874
No 282
>PRK10536 hypothetical protein; Provisional
Probab=96.25 E-value=0.013 Score=59.19 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=20.1
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++++|++|||||.||.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998873
No 283
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=96.15 E-value=0.019 Score=49.13 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 005024 549 LEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDE 628 (718)
Q Consensus 549 ~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ 628 (718)
++...|.+|. .+++++...+...+. ....|.|....++|+|.++|.|.+++.|+.+||.+
T Consensus 32 l~~~~l~~~~--------~l~~~~~~~l~~~~~------------~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~E 91 (96)
T PF13335_consen 32 LPGEELRKYC--------PLSSEAKKLLEQAAE------------KLNLSARGYHRILRVARTIADLEGSERITREHIAE 91 (96)
T ss_pred CCHHHHHhHc--------CCCHHHHHHHHHHHH------------HcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHH
Confidence 5555555542 467888888877653 36789999999999999999999999999999999
Q ss_pred HHHH
Q 005024 629 ALRL 632 (718)
Q Consensus 629 ai~l 632 (718)
|+.+
T Consensus 92 Al~y 95 (96)
T PF13335_consen 92 ALSY 95 (96)
T ss_pred HHhC
Confidence 9863
No 284
>PHA00729 NTP-binding motif containing protein
Probab=96.13 E-value=0.0061 Score=60.47 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
|++|+|+||||||++|.+++..+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999875
No 285
>PHA02624 large T antigen; Provisional
Probab=96.10 E-value=0.016 Score=65.10 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=62.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh---
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE--- 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~--- 447 (718)
-+||+||||||||+++.++.+.+.-.+... .+++. .-.|.+ | .++|..+++||++-.-.-
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~vlsV-NsPt~------------ks~FwL--~--pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGKSLNV-NCPPD------------KLNFEL--G--CAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEEe-eCCcc------------hhHHHh--h--hhhhceEEEeeeccccccccc
Confidence 699999999999999999999983222111 00000 001111 1 234566777887742211
Q ss_pred ----H----HHHHHHHhhccc-EEEEeeCCeE-EEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEE
Q 005024 448 ----S----DRTAIHEVMEQQ-TVSIAKAGIT-TSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWL 515 (718)
Q Consensus 448 ----~----~~~~L~~~me~~-~i~i~k~g~~-~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~ 515 (718)
. ...-|..+|+-. .+++.+.... .+.... -.|.|+|.. .||..+.-||-.++.
T Consensus 496 ~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~P-PlliT~Ney--------------~iP~T~~~Rf~~~~~ 558 (647)
T PHA02624 496 DLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFP-PGIVTMNEY--------------LIPQTVKARFAKVLD 558 (647)
T ss_pred cCCcccccchhhHHHhhcCCCCccccchhccCchhccCC-CeEEeecCc--------------ccchhHHHHHHHhcc
Confidence 1 124466666644 3444322111 111111 146678854 699999999965543
No 286
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.0048 Score=55.99 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.7
Q ss_pred cceeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
..|||+.|-||||||+++.++|..+.-..+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~ 37 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIE 37 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEe
Confidence 3489999999999999999999887544433
No 287
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.06 E-value=0.0069 Score=65.64 Aligned_cols=88 Identities=24% Similarity=0.256 Sum_probs=49.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---eeecC-CCCCCC----cceeeEeec-cccc-cee---ee---cceEeeecC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---VYTTG-RGSSGV----GLTAAVQRD-NVTN-EMV---LE---GGALVLADM 434 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~~~~~-~~~~~~----~l~~~~~~~-~~~g-~~~---~~---~g~l~~a~~ 434 (718)
++++.|+.|||||.+++++...+... +..++ .+..+. |-|...... +... ... .. .-.-.+.+-
T Consensus 24 ~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (364)
T PF05970_consen 24 NFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRKA 103 (364)
T ss_pred EEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhhh
Confidence 89999999999999999998887432 22211 111111 222111110 0000 000 00 011122344
Q ss_pred CeeeecccccCChHHHHHHHHhhc
Q 005024 435 GICAIDEFDKMDESDRTAIHEVME 458 (718)
Q Consensus 435 gil~iDEi~~~~~~~~~~L~~~me 458 (718)
.+++|||+.+++......+.+.|.
T Consensus 104 ~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 104 DVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred eeeecccccchhHHHHHHHHHhhh
Confidence 699999999999888887766665
No 288
>PF13173 AAA_14: AAA domain
Probab=96.04 E-value=0.0046 Score=56.21 Aligned_cols=80 Identities=24% Similarity=0.262 Sum_probs=43.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC---CceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP---RGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
-++|.||.|+|||++++.+++... ...|..-.......+. ..+ .. ++..+. ......++||||++.++.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~---~~~-~~-~~~~~~---~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA---DPD-LL-EYFLEL---IKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh---hhh-hH-HHHHHh---hccCCcEEEEehhhhhcc
Confidence 589999999999999998887653 2222221111100000 000 00 000000 001457899999999974
Q ss_pred HHHHHHHHhhcc
Q 005024 448 SDRTAIHEVMEQ 459 (718)
Q Consensus 448 ~~~~~L~~~me~ 459 (718)
....+....+.
T Consensus 76 -~~~~lk~l~d~ 86 (128)
T PF13173_consen 76 -WEDALKFLVDN 86 (128)
T ss_pred -HHHHHHHHHHh
Confidence 55556566553
No 289
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.03 E-value=0.014 Score=58.94 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=42.4
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEee---ecCCeeeecccccCChH
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVL---ADMGICAIDEFDKMDES 448 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~---a~~gil~iDEi~~~~~~ 448 (718)
+++.|.||+|||++++.+.... ...+... ++....+...........+.+....... .....++|||+..+++.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g 77 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR--LVVTVIS-PTIELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPG 77 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc--ccccccc-ccceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChH
Confidence 4678999999999999888773 1111000 0000011110011111111111111111 23579999999999987
Q ss_pred HHHHHHHhhc
Q 005024 449 DRTAIHEVME 458 (718)
Q Consensus 449 ~~~~L~~~me 458 (718)
....|.....
T Consensus 78 ~l~~l~~~~~ 87 (234)
T PF01443_consen 78 YLLLLLSLSP 87 (234)
T ss_pred HHHHHHhhcc
Confidence 6665544433
No 290
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.01 E-value=0.009 Score=68.42 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=22.7
Q ss_pred CCeeeecccccCChHHHHHHHHhhcc
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQ 459 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~ 459 (718)
..+++|||+.+++......|++++..
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~ 285 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPP 285 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCC
Confidence 46999999999999988899998864
No 291
>PRK14532 adenylate kinase; Provisional
Probab=96.00 E-value=0.0063 Score=59.34 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=26.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
+|+++|+||+|||++++.+++..+...+.+|
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~ 32 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTG 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCc
Confidence 7999999999999999999998865554443
No 292
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.99 E-value=0.0036 Score=56.10 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.6
Q ss_pred eeecCCCcchHHHHHHHHHHHCCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
|+|.|+||+|||++++.+++.+.-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 789999999999999999998643
No 293
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.85 E-value=0.0051 Score=72.73 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=47.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC---ceeec---CCCC----CCCcceeeEeecccccceeeecceEeeecCCeeeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR---GVYTT---GRGS----SGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAID 440 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~---~~~~~---~~~~----~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iD 440 (718)
-++|.|+||||||++++++...+.. .+..+ |... ...|..+.-+ . +-...+..+...+....+++||
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti-~--~~~~~~~~~~~~~~~~~llIvD 446 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTL-A--SLEYAWANGRDLLSDKDVLVID 446 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeH-H--HHHhhhccCcccCCCCcEEEEE
Confidence 4789999999999999998866532 12111 1100 0001110000 0 0000112222233467899999
Q ss_pred ccccCChHHHHHHHHhhc
Q 005024 441 EFDKMDESDRTAIHEVME 458 (718)
Q Consensus 441 Ei~~~~~~~~~~L~~~me 458 (718)
|+.+++......|+....
T Consensus 447 EasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 447 EAGMVGSRQMARVLKEAE 464 (744)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999888887877543
No 294
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.0073 Score=58.16 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=25.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
+|++.|+||+|||++|+.+++.++-....+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDT 31 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcH
Confidence 689999999999999999999976554433
No 295
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.78 E-value=0.0083 Score=58.02 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=27.7
Q ss_pred ccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHC
Q 005024 338 IYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 338 i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
++|.+.....+.-.+.... ...+. +++++|++|+|||++++.+...+
T Consensus 2 fvgR~~e~~~l~~~l~~~~-~~~~~--------~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQ-SGSPR--------NLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTS-S-------------EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-cCCCc--------EEEEECCCCCCHHHHHHHHHHHH
Confidence 4677777777766662110 00111 79999999999999999887765
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.78 E-value=0.0059 Score=56.41 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=21.4
Q ss_pred eeecCCCcchHHHHHHHHHHHCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
|+++|+||+|||++++.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998876
No 297
>PRK13947 shikimate kinase; Provisional
Probab=95.77 E-value=0.009 Score=57.21 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=27.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
||+|+|+||+|||++++.+++.++..++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 7999999999999999999999877666543
No 298
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.77 E-value=0.01 Score=59.71 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=28.6
Q ss_pred ccceeeecCCCcchHHHHHHHHHHHCCCceeecCC
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGR 402 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~ 402 (718)
+.++|+|+|+||+|||++++.+++.+.......|.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gd 39 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGN 39 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence 33479999999999999999999998766555544
No 299
>PRK08118 topology modulation protein; Reviewed
Probab=95.69 E-value=0.0091 Score=57.02 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
.|+++|+||+|||++|+.+++.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58999999999999999999987544
No 300
>PRK04296 thymidine kinase; Provisional
Probab=95.68 E-value=0.015 Score=56.76 Aligned_cols=22 Identities=18% Similarity=-0.004 Sum_probs=17.7
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+++||||+|||+++..++..+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 6889999999998876665544
No 301
>PRK00625 shikimate kinase; Provisional
Probab=95.67 E-value=0.0097 Score=57.10 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=25.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
||+|+|.||+|||++++.+++.+...++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id 30 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFD 30 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999999998655544
No 302
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.64 E-value=0.0041 Score=67.20 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48899999999999999888877
No 303
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.62 E-value=0.018 Score=67.83 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=48.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC-----ceeecCC-CCCCCcceeeEeecccc--cceeeecceE------eeecCCe
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR-----GVYTTGR-GSSGVGLTAAVQRDNVT--NEMVLEGGAL------VLADMGI 436 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~~~~--g~~~~~~g~l------~~a~~gi 436 (718)
.++|.|+||||||++++++...+.. .+..+.. +..+..+....-....| .-..+.++.. ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 5899999999999999998776532 2222111 00000010000000000 0000001100 0124579
Q ss_pred eeecccccCChHHHHHHHHhhcc
Q 005024 437 CAIDEFDKMDESDRTAIHEVMEQ 459 (718)
Q Consensus 437 l~iDEi~~~~~~~~~~L~~~me~ 459 (718)
+++||..+++......|++++..
T Consensus 420 lIvDEaSMvd~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 420 LIVDESSMMDTWLALSLLAALPD 442 (720)
T ss_pred EEEeccccCCHHHHHHHHHhCCC
Confidence 99999999999888888887754
No 304
>PRK03839 putative kinase; Provisional
Probab=95.57 E-value=0.011 Score=57.20 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=25.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
.|+|+|+||+|||++++.+++.+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 589999999999999999999986555443
No 305
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.54 E-value=0.0068 Score=58.49 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=52.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC-c---eeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR-G---VYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~-~---~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
|++|+|+||||||+||.+++..+-. + .|.. ...|..........+.. ..-.-.+.+-.+|+|||+...+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-----~~~L~~~l~~~~~~~~~--~~~~~~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-----ASDLLDELKQSRSDGSY--EELLKRLKRVDLLILDDLGYEP 121 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-----HHHHHHHHHCCHCCTTH--CHHHHHHHTSSCEEEETCTSS-
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-----cCceeccccccccccch--hhhcCccccccEecccccceee
Confidence 8999999999999999999876511 1 1110 00111110000001110 0000113355799999999764
Q ss_pred --hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhccc
Q 005024 447 --ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 447 --~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
+.....|+++++... . +-..|.|+|.....|... ..+-.+..+++||.
T Consensus 122 ~~~~~~~~l~~ii~~R~------------~-~~~tIiTSN~~~~~l~~~---~~d~~~a~aildRl 171 (178)
T PF01695_consen 122 LSEWEAELLFEIIDERY------------E-RKPTIITSNLSPSELEEV---LGDRALAEAILDRL 171 (178)
T ss_dssp --HHHHHCTHHHHHHHH------------H-T-EEEEEESS-HHHHHT------------------
T ss_pred ecccccccchhhhhHhh------------c-ccCeEeeCCCchhhHhhc---cccccccccccccc
Confidence 445566777776531 1 124566899773222100 00114667777775
No 306
>PF13245 AAA_19: Part of AAA domain
Probab=95.53 E-value=0.013 Score=47.74 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=16.5
Q ss_pred eeecCCCcchHH-HHHHHHHHHC
Q 005024 372 ICLMGDPGVAKS-QLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt-~la~~i~~~~ 393 (718)
+++.|||||||| +++..++...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 555999999999 5556666654
No 307
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.53 E-value=0.012 Score=55.22 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=24.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
+|+|+|+||+|||++++.+++.++...+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~ 29 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVD 29 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999887655443
No 308
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.49 E-value=0.013 Score=56.16 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|+|+||+|||++++.+++.++..++
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999999865544
No 309
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.47 E-value=0.035 Score=63.86 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCeeeecccccCChHHHHHHHHhhcc
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQ 459 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~ 459 (718)
..+++|||..+++-.....|++++..
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al~~ 291 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDALPP 291 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhccc
Confidence 36999999999999999999999865
No 310
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.071 Score=56.02 Aligned_cols=208 Identities=14% Similarity=0.191 Sum_probs=108.8
Q ss_pred ceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC---
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD--- 446 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~--- 446 (718)
.|++=.||.+||||++-+-+ +|.....+|...+.+.|.-.. . .-.+|.+.+ -.++.+||+..+.
T Consensus 226 yN~cElGPr~TGKshvYkev---Spn~~liSGGqttvAnLFYNm----a----trqiGlvg~--wDvVaFDEVagirFkd 292 (683)
T COG4930 226 YNMCELGPRQTGKSHVYKEV---SPNVRLISGGQTTVANLFYNM----A----TRQIGLVGL--WDVVAFDEVAGIRFKD 292 (683)
T ss_pred cchhhcCCCccCccceehcc---CCceEEeeCCcccHHHHHHHH----h----hccccceee--eeeeeehhhccccccC
Confidence 38999999999999997754 566666676665544443221 0 122333222 2478899998763
Q ss_pred hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC--CCCCCCC----CCcchhcCCChhhhcccceEEEeccCC
Q 005024 447 ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA--WGRYDLR----RTPAENINLPPALLSRFDLLWLILDRA 520 (718)
Q Consensus 447 ~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~--~g~~~~~----~~~~~~~~l~~~ll~Rfdli~~~~d~~ 520 (718)
++-...|...|+.|.+... ..+...+.+++.-.|-. ...+-+- -.+.+- -.+.|+++||.-++.-
T Consensus 293 kDg~qilKDYMaSGsf~RG----~~~v~~~ASlVFvGNvnqs~E~lvktshL~~pfPea-M~DtAFfDR~H~yiPG---- 363 (683)
T COG4930 293 KDGMQILKDYMASGSFERG----DKKVVSDASLVFVGNVNQSSEGLVKTSHLTYPFPEA-MRDTAFFDRIHGYIPG---- 363 (683)
T ss_pred ccHHHHHHHHHhcCCcccc----cccccccceEEEEecccccccceeehhhccccCchh-hhhhHHHHHHhccCcc----
Confidence 3445678889999987653 22334444554444433 1111000 000000 1233444454322211
Q ss_pred ChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcC-----CCCc
Q 005024 521 DMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSN-----TPHS 595 (718)
Q Consensus 521 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~-----~~~~ 595 (718)
-.++.+..+.+.+.-. -+.++++++..+||+....+. ....
T Consensus 364 -----------------------WEiPK~rpehft~rYG-----------~isDY~AE~~reMRKrS~sd~i~rf~kLgn 409 (683)
T COG4930 364 -----------------------WEIPKIRPEHFTKRYG-----------VISDYFAEALREMRKRSLSDLIGRFVKLGN 409 (683)
T ss_pred -----------------------ccCccCCHHHhccccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1122233222221111 134566666666666543221 1234
Q ss_pred ccCHHHHHHHHHHHHHHHH-hcCCCCccHHHHHHHHHHH
Q 005024 596 YTTVRTLLSILRISAALAR-LRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 596 ~~s~R~l~~lirla~a~A~-l~~~~~V~~~dv~~ai~l~ 633 (718)
..+.|...+.-|...-+-+ +......+.+++...+...
T Consensus 410 NlnqRDviavkrt~SGLlKLL~Pd~t~~kee~k~ileyA 448 (683)
T COG4930 410 NLNQRDVIAVKRTTSGLLKLLFPDKTFDKEELKTILEYA 448 (683)
T ss_pred ccchhhhHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH
Confidence 6777888777775444444 4556778999987765543
No 311
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.38 E-value=0.015 Score=58.41 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=16.5
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999997766655543
No 312
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.34 E-value=0.015 Score=56.26 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.1
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
|+++|+||+|||++++.+++..+-..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i 28 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL 28 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 789999999999999999998754333
No 313
>PRK13949 shikimate kinase; Provisional
Probab=95.33 E-value=0.016 Score=55.49 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=24.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|+|+||+|||++++.+++.+...++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~i 30 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFI 30 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 6999999999999999999999865443
No 314
>PRK14530 adenylate kinase; Provisional
Probab=95.32 E-value=0.015 Score=58.04 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
+|+|+|+||+|||++++.+++.++...+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 799999999999999999999986554433
No 315
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=95.31 E-value=0.028 Score=71.13 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=88.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC-CCceee-cCCCCCCCcceeeEeecccccceeeecceEeee--cCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA-PRGVYT-TGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLA--DMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a--~~gil~iDEi~~~~ 446 (718)
.++++|++|||||.++....... ++.++. +....+...++....... .....++...-. ..=++|+||++.=.
T Consensus 129 ~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~~~---~~k~~~~~~~~~~~~~~~~f~ddinmp~ 205 (1395)
T KOG3595|consen 129 PVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIESK---LDKRRSGNYGPPLGKKLVLFVDDINMPA 205 (1395)
T ss_pred eEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHHHH---HHHhcccCCCCCCCceeEEEEeccCCch
Confidence 79999999999999887766554 333222 111111111111100000 000111111000 11289999998532
Q ss_pred h------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC-CCCCCCCCCcchhcCCChhhhcccceEEEeccC
Q 005024 447 E------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA-WGRYDLRRTPAENINLPPALLSRFDLLWLILDR 519 (718)
Q Consensus 447 ~------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~-~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~ 519 (718)
. .....+++.++.+.+.....+... .-.++.+++|+||. .|++ .+++.+++.|-.+.. +.
T Consensus 206 ~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~-~i~~i~~~~a~~~~~~gr~----------~i~~r~~r~f~~~~~--~~ 272 (1395)
T KOG3595|consen 206 LDKYGDQPPIELLRQMLEHGGFYDRKKSEWV-EIENVQLVGAMNPPGGGRN----------DITERFLRHFLIVSL--NY 272 (1395)
T ss_pred hhhcCCccHHHHHHHHHHhceeeccccccee-EEeeeEEEeecCCCCCccC----------cccHHHHHHeeeEee--CC
Confidence 2 234667888887666554333333 33589999999965 6777 899999999955543 88
Q ss_pred CChhHHHHHHhhhhhhc
Q 005024 520 ADMDSDLEMARHVVYVH 536 (718)
Q Consensus 520 ~~~~~d~~i~~~il~~~ 536 (718)
|+.+.-..|-.+++..|
T Consensus 273 ~~~~sl~~if~~~~~~~ 289 (1395)
T KOG3595|consen 273 PSQESLTQIFNTILTGH 289 (1395)
T ss_pred CChhhHHHHHHHHHhcc
Confidence 88888888877777655
No 316
>PRK07261 topology modulation protein; Provisional
Probab=95.30 E-value=0.017 Score=55.36 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.|+++|+||+|||++|+.+++.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988753
No 317
>PRK14531 adenylate kinase; Provisional
Probab=95.11 E-value=0.02 Score=55.63 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=25.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
.|+++|+||+|||++++.+++...-..+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 699999999999999999999875444433
No 318
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.08 E-value=0.032 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.++|.|+.|+|||++++.+++.++.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999999999753
No 319
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=95.06 E-value=0.041 Score=65.15 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=45.3
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceee-Eeecc-----cccce-eeecceEeeecCCeeeeccccc
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAA-VQRDN-----VTNEM-VLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-----~~g~~-~~~~g~l~~a~~gil~iDEi~~ 444 (718)
+|++|+||+|||..+..++..+...++-........+.... .+.+. ..+.+ ....+........++++||+|-
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 79999999999999999999886655432222111000000 00000 00111 0001111112345999999999
Q ss_pred CChHHHHHHHH
Q 005024 445 MDESDRTAIHE 455 (718)
Q Consensus 445 ~~~~~~~~L~~ 455 (718)
|..+++..+.+
T Consensus 440 ~~~~dRg~v~~ 450 (871)
T KOG1968|consen 440 MFGEDRGGVSK 450 (871)
T ss_pred ccchhhhhHHH
Confidence 98866654433
No 320
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.01 E-value=0.022 Score=55.69 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+++|+||+|||++++.+++..+-..+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i 28 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 3899999999999999999998654443
No 321
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.97 E-value=0.015 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.5
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
|+|.|.||+|||++|+.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 322
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.96 E-value=0.019 Score=69.10 Aligned_cols=86 Identities=17% Similarity=0.116 Sum_probs=47.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC---CceeecCCCCCC---CcceeeEeecccc-cce--eeecceEeeecCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP---RGVYTTGRGSSG---VGLTAAVQRDNVT-NEM--VLEGGALVLADMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~---~~~~~~~~~~~~---~~l~~~~~~~~~~-g~~--~~~~g~l~~a~~gil~iDE 441 (718)
-+++.|.||||||++++.+..... ..+..+ .++. ..|....-....| ..+ .+..|...+....+++|||
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~--ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDE 441 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGA--ALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDE 441 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEe--cCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEEC
Confidence 467999999999999988776542 222211 1110 0110000000000 000 1122333344567999999
Q ss_pred cccCChHHHHHHHHhhc
Q 005024 442 FDKMDESDRTAIHEVME 458 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me 458 (718)
+.+++......|++..+
T Consensus 442 ASMv~~~~m~~LL~~a~ 458 (988)
T PRK13889 442 AGMVGTRQLERVLSHAA 458 (988)
T ss_pred cccCCHHHHHHHHHhhh
Confidence 99999888888877654
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.96 E-value=0.019 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999885
No 324
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.90 E-value=0.043 Score=57.74 Aligned_cols=24 Identities=46% Similarity=0.520 Sum_probs=22.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
+++|+|+||||||+||.+++..+.
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999998873
No 325
>PRK14526 adenylate kinase; Provisional
Probab=94.85 E-value=0.026 Score=56.06 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=25.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
+++|+|+||+|||++++.+++..+...+.+|
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G 32 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTG 32 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecC
Confidence 6899999999999999999988765444443
No 326
>PRK06217 hypothetical protein; Validated
Probab=94.85 E-value=0.028 Score=54.52 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=24.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|+|.||+|||++++.+++.++..++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 6999999999999999999999865443
No 327
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.74 E-value=0.032 Score=53.59 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=25.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
+|+|+|++|+|||++++.++..+...++..
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~vd~ 35 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEEEC
Confidence 799999999999999999999876554433
No 328
>PLN02200 adenylate kinase family protein
Probab=94.71 E-value=0.032 Score=56.43 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=25.4
Q ss_pred ceeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
..+++.|+||+|||++++.+++.++...+.+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~ 74 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSA 74 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEc
Confidence 4789999999999999999999876544433
No 329
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.70 E-value=0.046 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=22.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
+++++|++|+|||++++++....+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 899999999999999999988765
No 330
>PRK14528 adenylate kinase; Provisional
Probab=94.69 E-value=0.03 Score=54.54 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
++++.|+||+|||++++.+++......+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 68999999999999999999887544443
No 331
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.64 E-value=0.017 Score=57.49 Aligned_cols=24 Identities=25% Similarity=0.348 Sum_probs=20.3
Q ss_pred cccceeeecCCCcchHHHHHHHHH
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~ 390 (718)
|.+..+|++|+||+|||++|+.++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 334479999999999999999875
No 332
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.61 E-value=0.024 Score=55.02 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=22.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
-++++|+||+|||++++.+++.++...
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~ 31 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 488999999999999999998764433
No 333
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.60 E-value=0.033 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.3
Q ss_pred eeecCCCcchHHHHHHHHHHHCCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
++|+|+||+|||++++.+++.+..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC
Confidence 689999999999999999988643
No 334
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.56 E-value=0.031 Score=55.61 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=24.2
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
|+++|+||+|||++++.+++..+.....+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999998876544443
No 335
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.033 Score=51.59 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=26.4
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCceeecCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRGVYTTGR 402 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~ 402 (718)
|-+.|+||+|||++++.+|+.++-.++..|.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~ 33 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGT 33 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeeccH
Confidence 6788999999999999999998777665554
No 336
>PRK02496 adk adenylate kinase; Provisional
Probab=94.52 E-value=0.029 Score=54.45 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=23.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.++++|+||+|||++++.+++.++....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 6899999999999999999988754433
No 337
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.52 E-value=0.03 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred eeecCCCcchHHHHHHHHHHHCCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
++|+|+||+|||++++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 468999999999999999998753
No 338
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.52 E-value=0.046 Score=58.21 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=23.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
|++++|++|+|||++++++....|.
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCC
Confidence 8999999999999999999988874
No 339
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=94.51 E-value=0.12 Score=53.06 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=57.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDR 450 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 450 (718)
-++++|||+||||.++.+|+..+|.--..... +..|.+.. ..++-++.-||.. |.++..
T Consensus 115 ti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~----------------n~nF~f~d----~~~k~l~~weE~~-~~~~~v 173 (271)
T PF01057_consen 115 TIWFYGPASTGKTNLADAIANAVPNYGCVNWN----------------NNNFPFQD----CFNKRLIWWEEPN-MYPDEV 173 (271)
T ss_dssp EEEEESTTTSSHCHCHHCCCHHSCCEEEEECT----------------TTCCCCCC----CCCECEEECTCGG-CCTTCH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCcccEeccC----------------CCCCChhh----hhhccEEEecccC-ccHHHH
Confidence 69999999999999999999987642111111 11111111 1123466778874 555666
Q ss_pred HHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC
Q 005024 451 TAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA 486 (718)
Q Consensus 451 ~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~ 486 (718)
..+-.++.-..+.+.........-.++-+|.++|-.
T Consensus 174 e~~K~ilgG~~v~vd~K~k~~~~~~~tPviItsn~d 209 (271)
T PF01057_consen 174 ETAKMILGGTPVRVDVKNKDSEELERTPVIITSNND 209 (271)
T ss_dssp HHHHHCCTTSEEEEEETTTEEEEEEEEEEEEEECCE
T ss_pred HHHHHHhCCCceEeecccCCceEecCCceEEEeccc
Confidence 777777776777775433333333456666678855
No 340
>PRK06762 hypothetical protein; Provisional
Probab=94.50 E-value=0.034 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
-++|+|+||+|||++|+.+++.++.
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~ 28 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988753
No 341
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.49 E-value=0.029 Score=54.01 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
.++|.|+||+|||++++.+++.++...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~ 30 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPW 30 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 589999999999999999999876543
No 342
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.48 E-value=0.039 Score=66.90 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=51.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC---CceeecCCCCC---------CCcceeeEeecccccceeeecceEeeecCCeee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP---RGVYTTGRGSS---------GVGLTAAVQRDNVTNEMVLEGGALVLADMGICA 438 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~---~~~~~~~~~~~---------~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~ 438 (718)
-+++.|++|||||++++.+...+. ..+.. ..++ ..|+.+.-+ ..+ ...+..|...+..+.+++
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g--~ApTgkAA~~L~e~~Gi~a~TI-as~--ll~~~~~~~~l~~~~vlV 473 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVG--GALAGKAAEGLEKEAGIQSRTL-SSW--ELRWNQGRDQLDNKTVFV 473 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE--EcCcHHHHHHHHHhhCCCeeeH-HHH--HhhhccCccCCCCCcEEE
Confidence 488999999999999999987652 22221 1111 011111100 000 001123333445567999
Q ss_pred ecccccCChHHHHHHHHhhcc
Q 005024 439 IDEFDKMDESDRTAIHEVMEQ 459 (718)
Q Consensus 439 iDEi~~~~~~~~~~L~~~me~ 459 (718)
|||..+++......|++..+.
T Consensus 474 IDEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 474 LDEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred EECcccCCHHHHHHHHHHHHh
Confidence 999999999988888888863
No 343
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.45 E-value=0.032 Score=52.73 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=26.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
+|.|+|.+|+|||++.+++|+.+...++-
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D 32 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFID 32 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCccc
Confidence 79999999999999999999999776654
No 344
>PLN02459 probable adenylate kinase
Probab=94.45 E-value=0.045 Score=55.67 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=26.7
Q ss_pred ceeeecCCCcchHHHHHHHHHHHCCCceeecCC
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVAPRGVYTTGR 402 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~ 402 (718)
++++|+|+||+|||++++.+++...-..+.+|.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gd 62 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGD 62 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcH
Confidence 379999999999999999999987655444443
No 345
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.43 E-value=0.038 Score=55.12 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=26.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
.|+++|+||+|||++++.+++..+...+..|
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~ 32 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTG 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 5899999999999999999998876555543
No 346
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.43 E-value=0.036 Score=51.32 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=24.8
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
|.+.|+||+|||++++.++..+...++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999998765554443
No 347
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.39 E-value=0.05 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++|.||+|+|||+++|.++.+.+
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccC
Confidence 589999999999999999998864
No 348
>PRK06547 hypothetical protein; Provisional
Probab=94.26 E-value=0.073 Score=51.02 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|++.|++|+|||++++.+++.++
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588889999999999999998754
No 349
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.022 Score=61.97 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=24.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
..+||.||||+|||.||-.+|..+.-++.
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFv 567 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFV 567 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeE
Confidence 48999999999999999999988754433
No 350
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.14 E-value=0.043 Score=42.53 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
..+|.|++|+|||+++.++.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998776
No 351
>PRK13946 shikimate kinase; Provisional
Probab=94.12 E-value=0.05 Score=52.83 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=26.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
+|+|+|.||+|||++++.+++.+...++.+
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg~~~id~ 41 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLGLPFLDA 41 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeECc
Confidence 899999999999999999999986655443
No 352
>PRK14529 adenylate kinase; Provisional
Probab=94.12 E-value=0.037 Score=55.22 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=24.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|.|+||+|||++++.+++.+....+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 6899999999999999999998764433
No 353
>PLN02674 adenylate kinase
Probab=94.04 E-value=0.05 Score=55.02 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=25.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
+|+|.|+||+||++.++.+++...-....+|
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~~his~G 63 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCLCHLATG 63 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEEchh
Confidence 7999999999999999999998765444333
No 354
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.04 E-value=0.045 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
.+.|+||+|+|||++++.++...+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCe
Confidence 68999999999999999998886543
No 355
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.03 E-value=0.052 Score=51.92 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=25.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
+++|+|.||+|||++++.+++.++..++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 68999999999999999999988665543
No 356
>PRK13948 shikimate kinase; Provisional
Probab=94.02 E-value=0.057 Score=52.20 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=26.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
+|+|+|.+|+|||++++.+++.+...++..
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~ 41 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFIDT 41 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEEC
Confidence 899999999999999999999987666543
No 357
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.93 E-value=0.069 Score=56.99 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
|+|+.|++|+|||++++++....|.
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCC
Confidence 8999999999999999999887753
No 358
>PF14516 AAA_35: AAA-like domain
Probab=93.89 E-value=6.6 Score=41.94 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=30.5
Q ss_pred ccccHHHHHHHHHHHhC-CccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC
Q 005024 338 IYGHEDIKKALLLLLVG-APHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 338 i~g~~~~k~~i~~~l~~-~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+....+-.-+.-.|.. |. .+.+.||..+|||+++..+.+.+.
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~--------------~~~I~apRq~GKTSll~~l~~~l~ 56 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGS--------------YIRIKAPRQMGKTSLLLRLLERLQ 56 (331)
T ss_pred ccCchHHHHHHHHHHhcCCC--------------EEEEECcccCCHHHHHHHHHHHHH
Confidence 34444455555555554 54 799999999999999988877663
No 359
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.88 E-value=0.04 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
+++++|+||+|||+++..++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999987763
No 360
>PRK08233 hypothetical protein; Provisional
Probab=93.83 E-value=0.044 Score=52.84 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
=|.+.|+||+|||++++.++..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478899999999999999999875
No 361
>PF05729 NACHT: NACHT domain
Probab=93.82 E-value=0.036 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.1
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
++|+|+||+|||++++.++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999988765
No 362
>PRK14527 adenylate kinase; Provisional
Probab=93.79 E-value=0.046 Score=53.45 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
-++++|+||+|||++++.+++....
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5999999999999999999987643
No 363
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.76 E-value=0.047 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-++|+|+||+|||++++.++..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998864
No 364
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.72 E-value=0.056 Score=54.14 Aligned_cols=45 Identities=38% Similarity=0.540 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC
Q 005024 339 YGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 339 ~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
+|++..-..|...+.++... +++|+||.|+|||+|++.+......
T Consensus 2 ~gR~~el~~l~~~l~~~~~~------------~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 2 FGREKELEKLKELLESGPSQ------------HILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp -S-HHHHHHHHHCHHH--SS------------EEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred CCHHHHHHHHHHHHHhhcCc------------EEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 45555555555555444211 8999999999999999999998843
No 365
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.71 E-value=0.05 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+|+++|++|+|||+|++.++...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998764
No 366
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=93.56 E-value=0.16 Score=50.59 Aligned_cols=113 Identities=10% Similarity=0.077 Sum_probs=67.4
Q ss_pred eeeecCCCc-chHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeeccc--c-c-cee---eec------ceEeeecCCe
Q 005024 371 HICLMGDPG-VAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNV--T-N-EMV---LEG------GALVLADMGI 436 (718)
Q Consensus 371 ~vLl~G~pG-tGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~-g-~~~---~~~------g~l~~a~~gi 436 (718)
.-|+.|+.+ +||.-++.++++.+-......|..+... .+..+.. + + ... .+. -.-..+...|
T Consensus 17 AYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~----~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 17 SWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYH----FIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred eeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEE----EEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 689999998 9999999999888622111112211110 0000000 0 0 000 000 0011234569
Q ss_pred eeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEE-EEeCCCCCCCCCCCCcchhcCCChhhhcccceEE
Q 005024 437 CAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVL-SAANPAWGRYDLRRTPAENINLPPALLSRFDLLW 514 (718)
Q Consensus 437 l~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~vi-aa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~ 514 (718)
++||++++|.....++|+..+|+. |.++.+| .|.|+. .+.+.+.||+-.+.
T Consensus 93 iII~~ae~mt~~AANALLKtLEEP-------------P~~t~fILit~~~~--------------~LLpTIrSRCq~i~ 144 (263)
T PRK06581 93 AIIYSAELMNLNAANSCLKILEDA-------------PKNSYIFLITSRAA--------------SIISTIRSRCFKIN 144 (263)
T ss_pred EEEechHHhCHHHHHHHHHhhcCC-------------CCCeEEEEEeCChh--------------hCchhHhhceEEEe
Confidence 999999999999999999999973 3344444 455544 69999999994443
No 367
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.52 E-value=0.26 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+++.|++|+|||++++++....+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhC
Confidence 699999999999999998876654
No 368
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.51 E-value=0.06 Score=53.19 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=22.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||++++.++...+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 589999999999999999999876
No 369
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.49 E-value=0.018 Score=55.99 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.5
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-+.++||+|+|||+++|.+..+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999998654
No 370
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=93.45 E-value=0.89 Score=44.08 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=65.8
Q ss_pred CeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceE-EEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 435 GICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTA-VLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 435 gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~-viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
+.++||++++|+...+++|+..+|+- |.++. +++|.++. .+.+.++||+-.+
T Consensus 56 ~k~iI~~a~~l~~~A~NaLLK~LEEP-------------p~~~~fiL~t~~~~--------------~llpTI~SRc~~~ 108 (206)
T PRK08485 56 EKIIVIAAPSYGIEAQNALLKILEEP-------------PKNICFIIVAKSKN--------------LLLPTIRSRLIIE 108 (206)
T ss_pred cEEEEEchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH--------------hCchHHHhhheec
Confidence 34578999999999999999999973 33444 44555544 6999999999443
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAY 580 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y 580 (718)
..... ....+-..++.+++.+.+..++....+..-...+++.+.|...+
T Consensus 109 ~~~~~------------------~~~~~l~l~l~~l~~~~i~~~L~~~~ke~~~~~~ea~~lIa~la 157 (206)
T PRK08485 109 KRKQK------------------KPVKPLDLDLKKLDLKDIYEFLKELEKENKLSKEELKELIESLL 157 (206)
T ss_pred ccccc------------------ccccccccccCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 22100 00111124567899999988888744433345667777776654
No 371
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.057 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+++.|.||||||++++.++ .+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg 24 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG 24 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC
Confidence 68999999999999999999 543
No 372
>PRK04040 adenylate kinase; Provisional
Probab=93.38 E-value=0.07 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=22.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.|+++|.||+|||++++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999874
No 373
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.33 E-value=0.056 Score=51.26 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.0
Q ss_pred eeecCCCcchHHHHHHHHHHH
Q 005024 372 ICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~ 392 (718)
|.|+|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 374
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=93.31 E-value=0.48 Score=50.46 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=54.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDR 450 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 450 (718)
=++|+|||+||||+++..+.+.+.-.+.+--. ....|-+.| +++..+.+||+...---+-.
T Consensus 264 Clvi~GPPdTGKS~F~~SLi~Fl~GkViSf~N---------------s~ShFWLqP----L~d~Ki~llDDAT~~cW~Y~ 324 (432)
T PF00519_consen 264 CLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN---------------SKSHFWLQP----LADAKIALLDDATYPCWDYI 324 (432)
T ss_dssp EEEEESSCCCSHHHHHHHHHHHHTSEEE-GGG---------------TTSCGGGGG----GCT-SSEEEEEE-HHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHHHHhCCEEEEecC---------------CCCcccccc----hhcCcEEEEcCCcccHHHHH
Confidence 58899999999999999988887433322100 011223333 56778899999854322222
Q ss_pred -HHHHHhhcccEEEEeeC-CeEEEecCceEEEEEeCCC
Q 005024 451 -TAIHEVMEQQTVSIAKA-GITTSLNARTAVLSAANPA 486 (718)
Q Consensus 451 -~~L~~~me~~~i~i~k~-g~~~~l~~~~~viaa~Np~ 486 (718)
.-|..+|+-..+++... .....+.... +|.|+|-+
T Consensus 325 D~ylRNaLDGN~vsiD~KHkap~Qik~PP-LlITsN~d 361 (432)
T PF00519_consen 325 DTYLRNALDGNPVSIDCKHKAPVQIKCPP-LLITSNID 361 (432)
T ss_dssp HHHTHHHHCTSEEEEEESSSEEEEEE----EEEEESS-
T ss_pred HHHHHhccCCCeeeeeccCCCceEeecCc-eEEecCCC
Confidence 23567788778887532 2233333332 55678866
No 375
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.19 E-value=0.11 Score=54.47 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=22.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
+++++|++|+|||++++++....+
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999998864
No 376
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.18 E-value=0.063 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
=|-|+||+|||||+|++.++.+..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 389999999999999999998753
No 377
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.092 Score=61.91 Aligned_cols=49 Identities=24% Similarity=0.473 Sum_probs=34.9
Q ss_pred cCCcccc-cHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC
Q 005024 334 LAPEIYG-HEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 334 i~p~i~g-~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
+.|.|-+ .+++++.|.... ....+ |-+|+|+||+|||.++.-+++...+
T Consensus 185 ldPvigr~deeirRvi~iL~-Rrtk~------------NPvLVG~~gvgktaiv~gla~ri~~ 234 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS-RKTKN------------NPVLVGEPGVGKTAIVEGLAQRIAT 234 (898)
T ss_pred CCCccCCchHHHHHHHHHHh-ccCCC------------CceEEecCCCCchhHHHHHHHHhhc
Confidence 5677766 566766655433 32211 7899999999999999999987643
No 378
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.05 E-value=0.07 Score=49.06 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.6
Q ss_pred eeecCCCcchHHHHHHHHHHHCCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
+.|+||+|+|||++++.+++..+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 678999999999999999998754
No 379
>PF13479 AAA_24: AAA domain
Probab=93.03 E-value=0.065 Score=53.41 Aligned_cols=27 Identities=26% Similarity=0.643 Sum_probs=22.1
Q ss_pred cceeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
++.+||+|+||+|||+++..+ |+..+.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~i 29 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFI 29 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEE
Confidence 348999999999999999877 666554
No 380
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.01 E-value=0.21 Score=53.65 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+++.||+|+|||++++++....+
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 799999999999999999888664
No 381
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.99 E-value=0.063 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.7
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
++++|.||+|||++++.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 382
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.99 E-value=0.057 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.5
Q ss_pred eeecCCCcchHHHHHHHHHHHCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
|+|.|.||+|||++|+.+++.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999984
No 383
>PRK05439 pantothenate kinase; Provisional
Probab=92.98 E-value=0.16 Score=53.23 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=46.9
Q ss_pred ccccCChHHHHHHHHHhhC------hhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCC
Q 005024 305 EEYELRGDEEEHISRLAED------GDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDP 378 (718)
Q Consensus 305 ~~~~~~~~~~~~i~~~~~~------~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~p 378 (718)
....+|+++++.+..+... .++|-.|+.-|.-..-+......++... .+... .+...-|.+.|+|
T Consensus 25 ~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~f-l~~~~--------~~~~~iIgIaG~~ 95 (311)
T PRK05439 25 TPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQF-LGKNG--------QKVPFIIGIAGSV 95 (311)
T ss_pred CCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hcccC--------CCCCEEEEEECCC
Confidence 3456788888777665422 1355555554443333333333333332 22110 1122368899999
Q ss_pred cchHHHHHHHHHHHCC
Q 005024 379 GVAKSQLLKHIINVAP 394 (718)
Q Consensus 379 GtGKt~la~~i~~~~~ 394 (718)
|+|||++++.++..+.
T Consensus 96 gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 96 AVGKSTTARLLQALLS 111 (311)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 384
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=92.93 E-value=0.089 Score=55.39 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-++++|+||+|||++++.+++.++
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC
Confidence 588899999999999999999874
No 385
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.88 E-value=0.067 Score=51.61 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=22.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
-++|+||+|+|||++++.++...+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 3889999999999999999987654
No 386
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.86 E-value=0.17 Score=53.44 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=25.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|+|.||+|||++++.+++.+...++
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 8999999999999999999999876655
No 387
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.86 E-value=0.097 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=23.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
-+++.|.||+|||++++.++..++..
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~~ 30 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAID 30 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCe
Confidence 58999999999999999999987543
No 388
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=92.84 E-value=0.067 Score=59.13 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=25.2
Q ss_pred ccccceeeecCCCcchHHHHHHHHHHHCC
Q 005024 366 IRGDLHICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 366 ~r~~i~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
+...-|+|++||+|||||+|+|.++.+.|
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 44455999999999999999999998875
No 389
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.83 E-value=1.3 Score=48.65 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEE
Q 005024 660 LRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQI 706 (718)
Q Consensus 660 i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~ 706 (718)
+.-++...+ ..+++..+.+.+. |++..++.+.++.|++.-++..
T Consensus 226 ~~~l~~~~g-~~~s~~~la~~l~--~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 226 LRFLASNIG-SPISYSSLARELK--GISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred HHHHHhhcC-CccCHHHHHHHHh--ccchHHHHHHHHHHHHhhheEE
Confidence 333333333 4578887766665 8999999999999988877764
No 390
>PRK01184 hypothetical protein; Provisional
Probab=92.79 E-value=0.099 Score=50.68 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=20.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
-|+|+|+||+|||++++ +++.....+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~ 28 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPV 28 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcE
Confidence 48899999999999998 455554333
No 391
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.76 E-value=0.13 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=22.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
+++++|++|+|||++++++....|.
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCc
Confidence 8999999999999999999988753
No 392
>PRK14709 hypothetical protein; Provisional
Probab=92.76 E-value=1.5 Score=49.14 Aligned_cols=118 Identities=16% Similarity=0.079 Sum_probs=61.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDR 450 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 450 (718)
=++++|+-|.|||++++.+..+++.. .... +...++... .+... .....+...-+++.+|.+.-..-.-
T Consensus 207 ~~~l~G~G~NGKSt~~~~i~~llG~~--~~~~--~~~~~~~~~-~~~~~------~~lA~L~Gkrlv~~~E~~~g~~~~~ 275 (469)
T PRK14709 207 LVFVFGGGGNGKSVFLNVLAGILGDY--ATTA--AMDTFTASK-HDRHP------TDLAMLRGARLVTASETEEGRAWAE 275 (469)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhh--cccC--CHHHHhhcc-ccCCc------hhhHhhcCCeEEEeecCCcccccCH
Confidence 47889999999999999999998531 1110 000111110 00000 0000112233667788864222122
Q ss_pred HHHHHhhcc-cEEEEee-CCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhccc
Q 005024 451 TAIHEVMEQ-QTVSIAK-AGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRF 510 (718)
Q Consensus 451 ~~L~~~me~-~~i~i~k-~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rf 510 (718)
+++..|-. -.++... .....++...+.++.++|-..... .-+.++.+|+
T Consensus 276 -~~iK~ltGGD~i~ar~~~k~~f~f~p~~kl~~~~N~~P~~~----------d~d~g~~RR~ 326 (469)
T PRK14709 276 -ARIKQMTGGDTITARFMRQDFFEFVPQFKLTIVGNHKPRLR----------NVDEAARRRF 326 (469)
T ss_pred -HHHHhhhCCCcEEeecccCCceEEEeeeEEEEEcCCCCccC----------CCCceeEeeE
Confidence 33333333 3344432 122345666788888999664322 4567888897
No 393
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.73 E-value=0.092 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=23.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
++++.|++|+|||++++++....|..
T Consensus 129 ~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 129 NILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred EEEEECCCccccchHHHHHhhhcccc
Confidence 89999999999999999999988654
No 394
>PRK12608 transcription termination factor Rho; Provisional
Probab=92.71 E-value=0.098 Score=55.89 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
..||+||||||||++++.+++.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999988765
No 395
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=92.69 E-value=0.079 Score=55.36 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=42.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDR 450 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 450 (718)
-+-|+|++++|||++++.++.....+. ++..+.. . |. ..++ +.....+...++|||+....+...
T Consensus 195 ~~hl~G~Ss~GKTt~~~~a~Sv~G~p~----------~l~~sw~-~--T~-n~le-~~a~~~nd~~l~lDE~~~~~~~~~ 259 (286)
T PF06048_consen 195 GFHLYGQSSSGKTTALQLAASVWGNPD----------GLIRSWN-S--TD-NGLE-RTAAAHNDLPLVLDELSQADPKDV 259 (286)
T ss_pred EEEEEeCCCCCHHHHHHHhhhhCcCch----------hhhhcch-h--hH-HHHH-HHHHHcCCcceEehhccccchhHH
Confidence 577899999999999999988764332 1111100 0 00 0011 112223567899999999887765
Q ss_pred HHHHHhh
Q 005024 451 TAIHEVM 457 (718)
Q Consensus 451 ~~L~~~m 457 (718)
..+.-.+
T Consensus 260 ~~~iY~l 266 (286)
T PF06048_consen 260 GSIIYML 266 (286)
T ss_pred HHHHHHH
Confidence 4443333
No 396
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.66 E-value=0.15 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
|+|+.|++|+|||++++++....
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998875
No 397
>PTZ00301 uridine kinase; Provisional
Probab=92.58 E-value=0.36 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
=|.+.|+||+|||++|+.+++.+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 37789999999999999988664
No 398
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.51 E-value=0.085 Score=50.70 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+|.||+|||++++.++..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998863
No 399
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.51 E-value=0.35 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+||+|+|||+++..++..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999888653
No 400
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.50 E-value=0.32 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+||+|+|||+++..++..+
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999998887664
No 401
>PRK04182 cytidylate kinase; Provisional
Probab=92.42 E-value=0.12 Score=49.56 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
.|+|.|.||+|||++++.+++.+...++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58999999999999999999988655443
No 402
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.39 E-value=0.1 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|.|+|++|+|||++++.++..++
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 488999999999999999999875
No 403
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.39 E-value=0.095 Score=50.40 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.|+|+|+||+|||++++.++..+.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999998864
No 404
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.38 E-value=0.084 Score=49.60 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=36.3
Q ss_pred cCCeeeecccccCC---hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcc
Q 005024 433 DMGICAIDEFDKMD---ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSR 509 (718)
Q Consensus 433 ~~gil~iDEi~~~~---~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~R 509 (718)
.-.+++|||+..+- .-....+.+++++. |.+..+|.|.. +.|+.|+.+
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r-------------p~~~evIlTGr----------------~~p~~l~e~ 145 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAK-------------PEDLELVLTGR----------------NAPKELIEA 145 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcC-------------CCCCEEEEECC----------------CCCHHHHHh
Confidence 45799999998651 11234456666532 44556666654 688999999
Q ss_pred cceEEEe
Q 005024 510 FDLLWLI 516 (718)
Q Consensus 510 fdli~~~ 516 (718)
.|++--+
T Consensus 146 AD~VTEm 152 (159)
T cd00561 146 ADLVTEM 152 (159)
T ss_pred Cceeeec
Confidence 9998654
No 405
>PRK13808 adenylate kinase; Provisional
Probab=92.31 E-value=0.12 Score=54.61 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=25.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
+|+|+||||+|||++++.+++......+..
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 689999999999999999999876544433
No 406
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.30 E-value=0.082 Score=54.08 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=21.0
Q ss_pred eeecCCCcchHHHHHHHHHHHCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
|+|+|.||+|||++|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998763
No 407
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.29 E-value=0.091 Score=50.88 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=17.5
Q ss_pred eeecCCCcchHHHHHHHHHHH
Q 005024 372 ICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+.||||||||+++..++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999988765443
No 408
>PLN02165 adenylate isopentenyltransferase
Probab=92.26 E-value=0.14 Score=53.92 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=24.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
.+.|+||+|+|||+|+..++..++..+..
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIs 73 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIIN 73 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceec
Confidence 58999999999999999999998654443
No 409
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.25 E-value=0.18 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+++++|++|+|||++++++....
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 89999999999999999998763
No 410
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.24 E-value=0.11 Score=49.39 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=24.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
-|.+.|++|+|||++++.+++.++..++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 38899999999999999999987655443
No 411
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.21 E-value=0.097 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-++++||+|+|||++++++....+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999998887764
No 412
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.16 E-value=0.12 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=22.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|.|.|++|+|||+|++.+++.++
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999999873
No 413
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.16 E-value=0.1 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.5
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
|.|.|++|+|||++++.++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 414
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.15 E-value=0.12 Score=59.99 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=18.3
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.+++.||||||||+++..+...
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999887766544
No 415
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.15 E-value=4.3 Score=42.47 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=18.0
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.|+++||.|.|||.+....-..
T Consensus 51 sviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228|consen 51 SVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred ceEEEccCCCCceEeeHHHHhh
Confidence 6999999999999887655443
No 416
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.14 E-value=0.12 Score=51.13 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.1
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-++++|+||+|||+++..++..
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999877654
No 417
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.00 E-value=0.12 Score=53.13 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=19.7
Q ss_pred ccccceeeecCCCcchHHHHHHHHHH
Q 005024 366 IRGDLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 366 ~r~~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
.+|.+ +++.|+||||||+++-.++.
T Consensus 34 p~gs~-~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 34 PAYSV-INITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred ECCcE-EEEEcCCCCCHHHHHHHHHH
Confidence 34444 89999999999999976654
No 418
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=91.94 E-value=0.12 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.2
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++++++|+||+|||+++++++..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988644
No 419
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.92 E-value=0.11 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||.|+|||+|+|+++.+++
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 588999999999999999998764
No 420
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.92 E-value=0.099 Score=46.31 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=19.3
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
.|+++|.||+|||+|++++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 379999999999999999985
No 421
>PRK06851 hypothetical protein; Provisional
Probab=91.89 E-value=0.11 Score=55.83 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-++|.|+||||||++++.++..+
T Consensus 216 ~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 216 RYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998876
No 422
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.88 E-value=0.21 Score=55.84 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
..||+||||||||+|+..|++..
T Consensus 418 R~LIvgpp~aGKTtLL~~IAn~i 440 (672)
T PRK12678 418 RGLIVSPPKAGKTTILQNIANAI 440 (672)
T ss_pred EeEEeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999854
No 423
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=91.78 E-value=0.68 Score=36.40 Aligned_cols=56 Identities=7% Similarity=0.091 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCC-HHHHHHHHHHHHhcCeEEEeCCee
Q 005024 652 AISDIYSILRDEAARSNKLDVSYAHALNWISRKGYS-EAQLKECLEEYAALNVWQIHPHTF 711 (718)
Q Consensus 652 ~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~~~~~l~~l~~~g~i~~~~~~~ 711 (718)
....+++.|.+....+|-.+ .+.+.++..|+. ...+.+.|+.|++.|+|...++..
T Consensus 7 rQ~~vL~~I~~~~~~~G~~P----t~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r~~~~~ 63 (65)
T PF01726_consen 7 RQKEVLEFIREYIEENGYPP----TVREIAEALGLKSTSTVQRHLKALERKGYIRRDPGKA 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHSS-------HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEEGCCSC
T ss_pred HHHHHHHHHHHHHHHcCCCC----CHHHHHHHhCCCChHHHHHHHHHHHHCcCccCCCCCC
Confidence 34678888998888777432 356667788997 999999999999999999887653
No 424
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.77 E-value=0.079 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.9
Q ss_pred ecCCCcchHHHHHHHHHHHCCCc
Q 005024 374 LMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 374 l~G~pGtGKt~la~~i~~~~~~~ 396 (718)
|+||||+|||++++.+++...-.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~ 23 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV 23 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE
T ss_pred CcCCCCCChHHHHHHHHHhcCcc
Confidence 57999999999999999986433
No 425
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.69 E-value=0.34 Score=45.65 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-++|+|++|+|||+|+.++....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999887553
No 426
>PRK08356 hypothetical protein; Provisional
Probab=91.67 E-value=0.19 Score=49.20 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=19.2
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
.++|+||||+|||++++++.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999964
No 427
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.66 E-value=0.14 Score=49.41 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.+.++|++|+|||++++.++..+..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4899999999999999999998754
No 428
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.65 E-value=0.11 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||+|||||+++|.||.+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48889999999999999998764
No 429
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.65 E-value=0.085 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||+|++.++...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999987664
No 430
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=91.58 E-value=0.59 Score=51.63 Aligned_cols=97 Identities=12% Similarity=0.148 Sum_probs=67.1
Q ss_pred ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC-CCCCCCCCCcchhcCCChh
Q 005024 427 GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA-WGRYDLRRTPAENINLPPA 505 (718)
Q Consensus 427 g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~-~g~~~~~~~~~~~~~l~~~ 505 (718)
|++..|+.|++=+=|.-+.+.+....|+.+-++|.+... +..-.++..-.|+|-+|.. +..|..+ .=.+|
T Consensus 250 Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~~--~~~~~i~~d~lIvahsNesE~q~fk~n-------~~nEA 320 (649)
T COG2766 250 GALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKGT--EGIGAIPFDGLIVAHSNESEWQTFKNN-------KNNEA 320 (649)
T ss_pred chhhcccchHHHHHHHHhCcHHHHHHHhcccccCccCCC--CCcCccccCceEEeecCcHHHHHhhcC-------CchHH
Confidence 788888999998888888888888888888888887654 3244566777889999976 3333222 35689
Q ss_pred hhcccceEEEeccC-CChhHHHHHHhhhhh
Q 005024 506 LLSRFDLLWLILDR-ADMDSDLEMARHVVY 534 (718)
Q Consensus 506 ll~Rfdli~~~~d~-~~~~~d~~i~~~il~ 534 (718)
|++|. .++-+ ++ ....++.+|-+.++.
T Consensus 321 f~dRi-~~v~v-PY~L~vseE~kIYEKll~ 348 (649)
T COG2766 321 FLDRI-YKVKV-PYCLRVSEEAKIYEKLLQ 348 (649)
T ss_pred HHhhe-eeeec-ceeeeecHHHHHHHHHhc
Confidence 99997 33222 22 234557777777665
No 431
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=91.53 E-value=0.18 Score=50.27 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=25.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
.|-|.||+|+|||++++.+++.++..++.+|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g 34 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSG 34 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCc
Confidence 5889999999999999999998765544443
No 432
>PLN02199 shikimate kinase
Probab=91.52 E-value=0.27 Score=50.78 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=25.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
+|+|+|.+|+|||++++.+++.+...++.
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fID 132 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFD 132 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 89999999999999999999987666544
No 433
>PRK12338 hypothetical protein; Provisional
Probab=91.48 E-value=0.2 Score=52.60 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=24.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
-+++.|.||+|||++|+.++..++...+
T Consensus 6 ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 6 VILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 6899999999999999999999875433
No 434
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.47 E-value=0.3 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|-|.|++|+|||++++.+...+.
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999988764
No 435
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.44 E-value=0.14 Score=49.70 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=22.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
-+.|+||+|+|||++++.+.+..|.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4899999999999999999887654
No 436
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=91.38 E-value=0.52 Score=53.15 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=17.4
Q ss_pred eeeecCCCcchHH-HHHHHHHHH
Q 005024 371 HICLMGDPGVAKS-QLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt-~la~~i~~~ 392 (718)
-++++|++|+||| ++-+++++.
T Consensus 68 vlIviGeTGsGKSTQipQyL~ea 90 (674)
T KOG0922|consen 68 VLIVIGETGSGKSTQIPQYLAEA 90 (674)
T ss_pred EEEEEcCCCCCccccHhHHHHhc
Confidence 6889999999996 566776554
No 437
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.36 E-value=0.13 Score=44.76 Aligned_cols=20 Identities=30% Similarity=0.644 Sum_probs=18.3
Q ss_pred eeeecCCCcchHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~ 390 (718)
-+.|+||+|+|||+|++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999875
No 438
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=91.33 E-value=0.14 Score=56.02 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=24.6
Q ss_pred cccceeeecCCCcchHHHHHHHHHHHCCC
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
..-.|+|+.||.|||||+|.|-++.+.|-
T Consensus 506 ~~G~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 506 EPGMHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred cCCceEEEECCCCccHHHHHHHHhccCcc
Confidence 34449999999999999999999888763
No 439
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=91.28 E-value=0.15 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.6
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+|+|+||+|||+|++.+...
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999887743
No 440
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.27 E-value=0.14 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.7
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+-|.||+|||||+++|.||..-
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999998663
No 441
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=91.26 E-value=0.15 Score=47.02 Aligned_cols=23 Identities=39% Similarity=0.777 Sum_probs=20.1
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|+..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999888654
No 442
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=91.24 E-value=0.15 Score=48.03 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.5
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.|+++|+||+|||+|+.++...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999887654
No 443
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.22 E-value=0.14 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+||+|+|||+|++.++...
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998765
No 444
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.18 E-value=0.16 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.++|+||+|+|||++++.+++....
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 7999999999999999999988754
No 445
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.17 E-value=0.14 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.0
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.+.++++|++|+|||+|++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 347999999999999999998764
No 446
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.16 E-value=0.1 Score=55.88 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
..||+||||+|||+|++.|++..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHH
Confidence 78999999999999999998865
No 447
>PRK10646 ADP-binding protein; Provisional
Probab=91.08 E-value=0.34 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=22.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|+|.|+=|+|||+++|.+++.+.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999985
No 448
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.08 E-value=0.062 Score=56.17 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.+.|.|+-|.|||+|....-..+|-
T Consensus 67 GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 67 GLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred eEEEECCCCccHHHHHHHHHhhCCc
Confidence 5999999999999999988888864
No 449
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=91.07 E-value=0.16 Score=57.46 Aligned_cols=26 Identities=27% Similarity=0.629 Sum_probs=24.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
++|+.|++|+|||+|+|+++.+-|..
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g 446 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWG 446 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccC
Confidence 89999999999999999999998743
No 450
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.01 E-value=0.31 Score=48.48 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.2
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
-++|+||.|+|||++++.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 488999999999999999984
No 451
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.99 E-value=0.12 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.2
Q ss_pred eeecCCCcchHHHHHHHHHHHCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
|.+.|++|+|||++|+.++..+.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999985
No 452
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.97 E-value=0.18 Score=50.25 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+++.|+||+|||+++..++...
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999998887653
No 453
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.93 E-value=0.23 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.9
Q ss_pred eeecCCCcchHHHHHHHHHHHCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
|.+.|.||+|||++++.+++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999874
No 454
>PRK13695 putative NTPase; Provisional
Probab=90.91 E-value=0.18 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+++|+|+||+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987654
No 455
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=90.90 E-value=0.17 Score=47.76 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=18.5
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
+|+++|++|+|||+|+..+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987653
No 456
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.86 E-value=0.15 Score=47.78 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-|+|+|.||+|||++|+++.+.+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 457
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.85 E-value=0.26 Score=47.14 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+|+.|+||+|||++|..++...+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 589999999999999999988764
No 458
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.82 E-value=0.57 Score=50.28 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+||+|+|||+++..++..+
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999998887654
No 459
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=90.82 E-value=0.52 Score=49.05 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=24.1
Q ss_pred ceeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
+-|++.|++|+|||++|..++..++..
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 479999999999999999999998654
No 460
>PRK07078 hypothetical protein; Validated
Probab=90.79 E-value=19 Score=42.86 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.6
Q ss_pred eeecCCCcchHHHHHHHHHHHCCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
++|+|+-|.|||++++.+..+++.
T Consensus 494 ~~l~G~G~NGKSt~l~~l~~llG~ 517 (759)
T PRK07078 494 FFLYGTGANGKSVFVNTLATILGD 517 (759)
T ss_pred EEEECCCCCCchHHHHHHHHHhhh
Confidence 568999999999999999999864
No 461
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=90.75 E-value=0.17 Score=47.46 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=19.4
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+++|+||+|||++++.+...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988643
No 462
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=90.75 E-value=0.17 Score=47.90 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.0
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+.|+++|+||+|||+|+.++...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 37999999999999999888643
No 463
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.74 E-value=0.16 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||+|++.++...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998664
No 464
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=90.71 E-value=0.25 Score=47.64 Aligned_cols=28 Identities=29% Similarity=0.252 Sum_probs=22.6
Q ss_pred eeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
|.|+|.||+|||++++.+++ .+..++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 68999999999999999998 55444443
No 465
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=90.70 E-value=0.15 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|+-|||||+|....-...|
T Consensus 116 GlYlYG~VGcGKTmLMDlFy~~~~ 139 (467)
T KOG2383|consen 116 GLYLYGSVGCGKTMLMDLFYDALP 139 (467)
T ss_pred eEEEecccCcchhHHHHHHhhcCC
Confidence 599999999999999987765554
No 466
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=90.69 E-value=0.37 Score=43.20 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
-|+|.|+=|.|||+++|.+++.+..
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5999999999999999999999843
No 467
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.67 E-value=0.33 Score=55.66 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=38.0
Q ss_pred cCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC
Q 005024 334 LAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 334 i~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
..|..+-..++-+ ++..+.-.. ...|. .|+|+|.||+|||++++.++..+..
T Consensus 367 ~pP~~f~rpeV~~-iL~~~~~~r---~~~g~------~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVA-ELRRTYPPR---HKQGF------TVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHH-HHHHHhccc---cCCCe------EEEEECCCCChHHHHHHHHHHHhhh
Confidence 4578888888766 555555432 12222 7999999999999999999998753
No 468
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=90.67 E-value=0.18 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.6
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+++|++|+|||+|++.+...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999987654
No 469
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=90.65 E-value=0.18 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.4
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+.++|.++|+||+|||+|++++...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3448999999999999999988764
No 470
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.63 E-value=0.17 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|++|+|||+|++.++...+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999987753
No 471
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.62 E-value=0.49 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+||+|+|||+++..+|..+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999988887654
No 472
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.61 E-value=0.2 Score=50.27 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.3
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-++++|+||+|||+++..++..
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~ 46 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVE 46 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999887754
No 473
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=90.60 E-value=0.18 Score=47.26 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.4
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+++++|+||+|||+|+..+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999987643
No 474
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=90.59 E-value=0.19 Score=46.88 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.9
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
.|+++|+||+|||+|++.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988764
No 475
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.57 E-value=0.2 Score=48.04 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|++|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 588999999999999999998764
No 476
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.56 E-value=0.17 Score=51.43 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+||+|+|||+|++.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998764
No 477
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.55 E-value=0.17 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||+|++.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 478
>PRK13975 thymidylate kinase; Provisional
Probab=90.51 E-value=0.19 Score=49.12 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=22.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|.+.|++|+|||++++.+++.+.
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999975
No 479
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=90.47 E-value=0.17 Score=47.73 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=20.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+|+++|++|+|||+|+..+....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 58999999999999999887643
No 480
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.47 E-value=0.17 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.9
Q ss_pred eeecCCCcchHHHHHHHHHHHCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
|.+.|+||+|||++++.++..+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998864
No 481
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=90.45 E-value=0.19 Score=46.42 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=19.5
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+++|+||+|||+++..+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999987644
No 482
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.43 E-value=0.18 Score=49.71 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||+|++.++...
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 483
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=90.43 E-value=0.18 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.7
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.|+|+|++|+|||+|++++...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999998654
No 484
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.42 E-value=0.55 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=19.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+||+|+|||+++..++..+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999887776543
No 485
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.34 E-value=0.2 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+||+|+|||+|++.++...+
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999998864
No 486
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=90.33 E-value=0.21 Score=46.88 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.7
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
.|+++|+||+|||+|+..+..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999887764
No 487
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.32 E-value=0.18 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||+|++.++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 488
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.31 E-value=0.23 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.6
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.+||.|++|.|||+++..+.+.
T Consensus 16 gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 16 GVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 7999999999999999877664
No 489
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=90.29 E-value=0.29 Score=51.02 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=20.3
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-|.|+|++|+|||+||+.+++.
T Consensus 21 ~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 21 VVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEcCCcCCcceeeeecccc
Confidence 6999999999999999998866
No 490
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=90.22 E-value=0.18 Score=47.24 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.0
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+++|++|+|||+|++.+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 3789999999999999888643
No 491
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.22 E-value=0.21 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-++|+||+|+|||++++.+.+..+
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCC
Confidence 478899999999999999976543
No 492
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=90.20 E-value=0.22 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.4
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-+.|+|+||+|||+++..++..
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999988754
No 493
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.20 E-value=0.16 Score=49.10 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=19.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+|+++|++|.|||+.|-.++-.+
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHH
Confidence 79999999999999997776544
No 494
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.19 E-value=0.2 Score=49.84 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||+|++.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998764
No 495
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.15 E-value=0.19 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||+|++.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998765
No 496
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=90.15 E-value=0.14 Score=53.12 Aligned_cols=24 Identities=21% Similarity=0.620 Sum_probs=21.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHHC
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+||++|++|+|||++++.+....
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~ 28 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSD 28 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 399999999999999999998753
No 497
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=90.14 E-value=0.2 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||+|++.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 498
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=90.13 E-value=0.2 Score=47.51 Aligned_cols=22 Identities=32% Similarity=0.736 Sum_probs=19.3
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+++|+||+|||+|++.+...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999887543
No 499
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.11 E-value=0.21 Score=47.45 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 699999999999999999998875
No 500
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=90.09 E-value=0.43 Score=43.94 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=22.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|+|.|+=|.|||+++|.+++.+.
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcC
Confidence 599999999999999999999985
Done!