Query 005024
Match_columns 718
No_of_seqs 408 out of 4139
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:04:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 100.0 2.5E-94 8.6E-99 821.1 33.9 584 9-639 4-593 (595)
2 3f8t_A Predicted ATPase involv 100.0 1.7E-69 5.8E-74 577.9 31.9 374 219-644 109-494 (506)
3 1ltl_A DNA replication initiat 100.0 1E-50 3.5E-55 418.2 26.1 269 4-332 9-279 (279)
4 2vl6_A SSO MCM N-TER, minichro 100.0 2.8E-48 9.7E-53 398.7 23.6 254 8-302 9-267 (268)
5 2r44_A Uncharacterized protein 99.9 1.9E-25 6.4E-30 238.0 31.7 278 325-638 16-302 (331)
6 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 1.4E-23 4.7E-28 232.5 26.1 263 325-627 11-280 (500)
7 1g8p_A Magnesium-chelatase 38 99.9 2E-23 7E-28 223.9 22.7 268 336-639 24-328 (350)
8 3pfi_A Holliday junction ATP-d 99.9 2E-21 7E-26 207.3 22.3 284 336-714 29-320 (338)
9 1ojl_A Transcriptional regulat 99.9 5.1E-22 1.7E-26 208.1 14.4 268 371-696 27-303 (304)
10 1hqc_A RUVB; extended AAA-ATPa 99.8 2.3E-19 7.9E-24 190.1 25.3 285 336-713 12-304 (324)
11 3k1j_A LON protease, ATP-depen 99.8 3.7E-20 1.2E-24 212.3 15.7 241 336-632 41-374 (604)
12 1in4_A RUVB, holliday junction 99.8 4.6E-17 1.6E-21 173.0 25.7 293 326-714 11-317 (334)
13 1ofh_A ATP-dependent HSL prote 99.8 1.8E-18 6.3E-23 181.8 12.2 267 328-631 7-297 (310)
14 2bjv_A PSP operon transcriptio 99.8 2.4E-18 8.4E-23 176.9 12.0 231 336-627 6-251 (265)
15 1ny5_A Transcriptional regulat 99.7 7.3E-19 2.5E-23 190.4 7.6 209 370-629 161-383 (387)
16 1um8_A ATP-dependent CLP prote 99.7 1.8E-18 6.1E-23 187.3 10.0 271 330-630 15-362 (376)
17 3dzd_A Transcriptional regulat 99.7 6.6E-18 2.3E-22 181.4 11.8 201 371-613 154-361 (368)
18 3hws_A ATP-dependent CLP prote 99.7 1.4E-18 4.9E-23 187.1 2.7 254 331-615 10-324 (363)
19 3pvs_A Replication-associated 99.7 9.7E-17 3.3E-21 176.3 16.6 204 336-631 26-242 (447)
20 4fcw_A Chaperone protein CLPB; 99.7 2.5E-17 8.6E-22 173.3 9.1 244 327-613 8-278 (311)
21 3m6a_A ATP-dependent protease 99.6 2.4E-16 8.1E-21 177.9 9.3 240 334-632 79-340 (543)
22 4b4t_J 26S protease regulatory 99.6 6.5E-16 2.2E-20 164.5 11.5 189 371-635 184-391 (405)
23 3syl_A Protein CBBX; photosynt 99.6 3.7E-16 1.2E-20 164.3 8.9 233 328-627 23-280 (309)
24 4b4t_I 26S protease regulatory 99.6 1.1E-15 3.6E-20 163.1 10.9 189 371-636 218-426 (437)
25 3uk6_A RUVB-like 2; hexameric 99.6 3.6E-15 1.2E-19 160.7 14.7 140 434-633 190-330 (368)
26 1sxj_D Activator 1 41 kDa subu 99.6 1.6E-14 5.6E-19 154.5 18.1 279 334-704 35-332 (353)
27 3pxi_A Negative regulator of g 99.6 2.4E-15 8.2E-20 177.3 11.6 226 331-609 486-720 (758)
28 1r6b_X CLPA protein; AAA+, N-t 99.6 1E-14 3.5E-19 172.1 17.0 237 327-610 449-712 (758)
29 3h4m_A Proteasome-activating n 99.6 4.4E-15 1.5E-19 154.1 11.8 226 337-636 18-261 (285)
30 2v1u_A Cell division control p 99.6 2.9E-14 9.9E-19 154.3 17.8 300 335-707 18-351 (387)
31 2c9o_A RUVB-like 1; hexameric 99.6 3.5E-14 1.2E-18 157.2 18.2 142 435-635 297-439 (456)
32 4b4t_M 26S protease regulatory 99.6 2E-15 6.8E-20 163.3 7.8 189 371-635 217-424 (434)
33 4b4t_K 26S protease regulatory 99.6 1E-14 3.6E-19 157.6 13.2 187 371-632 208-413 (428)
34 3vfd_A Spastin; ATPase, microt 99.6 2.3E-14 7.8E-19 155.6 15.9 223 337-633 116-365 (389)
35 2chg_A Replication factor C sm 99.6 2.4E-14 8.1E-19 142.0 14.3 202 336-631 17-224 (226)
36 1lv7_A FTSH; alpha/beta domain 99.6 3E-14 1E-18 145.5 15.2 220 336-634 12-253 (257)
37 4b4t_H 26S protease regulatory 99.6 1.1E-14 3.8E-19 156.8 11.8 189 371-635 245-452 (467)
38 3eie_A Vacuolar protein sortin 99.5 3.5E-15 1.2E-19 157.7 7.5 162 336-531 18-195 (322)
39 4b4t_L 26S protease subunit RP 99.5 2.3E-14 7.9E-19 155.1 13.2 189 371-636 217-425 (437)
40 3d8b_A Fidgetin-like protein 1 99.5 3.9E-14 1.3E-18 151.8 14.6 165 336-533 84-264 (357)
41 1iqp_A RFCS; clamp loader, ext 99.5 7.9E-14 2.7E-18 147.3 16.5 205 332-631 21-232 (327)
42 1fnn_A CDC6P, cell division co 99.5 1.8E-13 6.1E-18 148.3 19.0 307 336-709 17-353 (389)
43 2qz4_A Paraplegin; AAA+, SPG7, 99.5 2.6E-14 8.7E-19 146.3 10.8 229 335-636 5-252 (262)
44 3b9p_A CG5977-PA, isoform A; A 99.5 7.6E-14 2.6E-18 145.7 14.0 226 336-632 21-271 (297)
45 2chq_A Replication factor C sm 99.5 7.4E-14 2.5E-18 147.0 13.9 201 336-631 17-224 (319)
46 2qp9_X Vacuolar protein sortin 99.5 3.8E-14 1.3E-18 151.6 11.1 203 336-614 51-269 (355)
47 1xwi_A SKD1 protein; VPS4B, AA 99.5 1.1E-13 3.7E-18 146.0 13.5 162 336-531 12-190 (322)
48 3u61_B DNA polymerase accessor 99.5 1.1E-13 3.8E-18 146.3 12.7 210 334-631 24-235 (324)
49 1qvr_A CLPB protein; coiled co 99.5 8.7E-14 3E-18 165.8 12.2 231 336-611 558-817 (854)
50 1sxj_C Activator 1 40 kDa subu 99.5 2.5E-13 8.4E-18 144.7 13.1 209 335-631 24-237 (340)
51 2zan_A Vacuolar protein sortin 99.5 4.2E-13 1.4E-17 147.8 14.8 164 337-530 135-311 (444)
52 2qby_B CDC6 homolog 3, cell di 99.4 1E-12 3.5E-17 142.2 17.0 289 336-708 20-340 (384)
53 2ce7_A Cell division protein F 99.4 4.9E-13 1.7E-17 147.0 12.5 218 336-634 16-257 (476)
54 1g41_A Heat shock protein HSLU 99.4 2.6E-12 9E-17 139.1 17.9 161 433-630 250-430 (444)
55 1njg_A DNA polymerase III subu 99.4 3.8E-12 1.3E-16 127.7 16.1 210 335-631 22-249 (250)
56 2dhr_A FTSH; AAA+ protein, hex 99.4 1.7E-12 5.8E-17 143.5 14.6 218 336-635 31-273 (499)
57 2qby_A CDC6 homolog 1, cell di 99.4 1.9E-12 6.5E-17 139.8 14.8 296 336-707 20-348 (386)
58 3hu3_A Transitional endoplasmi 99.4 5.4E-13 1.8E-17 147.9 10.5 162 336-531 204-383 (489)
59 1sxj_B Activator 1 37 kDa subu 99.4 5.2E-12 1.8E-16 133.0 17.2 203 336-631 21-229 (323)
60 2r62_A Cell division protease 99.4 6.6E-14 2.3E-18 143.8 1.7 223 336-633 11-253 (268)
61 1jr3_A DNA polymerase III subu 99.4 4.9E-11 1.7E-15 128.4 23.2 210 334-631 14-242 (373)
62 3cf0_A Transitional endoplasmi 99.4 8.5E-13 2.9E-17 138.0 8.2 164 337-533 16-199 (301)
63 3bos_A Putative DNA replicatio 99.3 9E-12 3.1E-16 125.2 15.0 179 371-631 54-241 (242)
64 3pxg_A Negative regulator of g 99.3 6.6E-12 2.3E-16 139.2 15.1 220 336-609 180-406 (468)
65 3n70_A Transport activator; si 99.3 8.3E-13 2.8E-17 122.3 6.4 108 371-513 26-137 (145)
66 3co5_A Putative two-component 99.3 2E-13 6.8E-18 126.1 1.2 109 371-515 29-137 (143)
67 1l8q_A Chromosomal replication 99.3 1.9E-11 6.4E-16 129.2 12.8 186 371-632 39-239 (324)
68 1d2n_A N-ethylmaleimide-sensit 99.3 2.4E-12 8.1E-17 132.5 5.5 171 371-611 66-247 (272)
69 1sxj_E Activator 1 40 kDa subu 99.2 1.2E-10 4.3E-15 124.3 17.7 194 336-613 14-244 (354)
70 3te6_A Regulatory protein SIR3 99.2 8.4E-12 2.9E-16 129.8 8.1 182 371-615 47-288 (318)
71 4akg_A Glutathione S-transfera 99.2 4.9E-10 1.7E-14 144.2 25.4 201 371-633 647-857 (2695)
72 1ixz_A ATP-dependent metallopr 99.2 1.5E-11 5.1E-16 125.2 9.1 180 371-630 51-253 (254)
73 3cf2_A TER ATPase, transitiona 99.2 1.9E-12 6.5E-17 149.9 2.3 161 337-533 478-661 (806)
74 1iy2_A ATP-dependent metallopr 99.2 1.8E-11 6.3E-16 126.3 8.9 180 371-630 75-277 (278)
75 2z4s_A Chromosomal replication 99.2 2.5E-11 8.7E-16 133.3 9.5 187 371-633 132-332 (440)
76 4akg_A Glutathione S-transfera 99.2 1E-10 3.4E-15 150.5 15.3 200 371-607 1269-1483(2695)
77 1r6b_X CLPA protein; AAA+, N-t 99.2 2.4E-10 8.2E-15 134.8 17.5 220 335-633 185-433 (758)
78 1sxj_A Activator 1 95 kDa subu 99.2 3.1E-10 1.1E-14 127.4 17.5 220 336-633 39-274 (516)
79 3pxi_A Negative regulator of g 99.2 2.3E-10 7.8E-15 134.8 17.0 217 336-606 180-403 (758)
80 3t15_A Ribulose bisphosphate c 99.2 8.4E-12 2.9E-16 129.7 3.9 142 368-533 35-198 (293)
81 3vkg_A Dynein heavy chain, cyt 99.2 2.6E-10 8.9E-15 147.3 18.1 196 371-607 1306-1521(3245)
82 3cf2_A TER ATPase, transitiona 99.1 2.9E-11 1E-15 140.0 7.1 160 336-533 204-385 (806)
83 1a5t_A Delta prime, HOLB; zinc 99.1 9.4E-10 3.2E-14 116.5 17.2 178 341-608 7-207 (334)
84 1w5s_A Origin recognition comp 99.0 1.6E-08 5.5E-13 110.0 22.2 304 335-709 21-373 (412)
85 2x8a_A Nuclear valosin-contain 99.0 3.5E-10 1.2E-14 116.2 8.0 161 336-533 10-191 (274)
86 3vkg_A Dynein heavy chain, cyt 99.0 2.5E-08 8.6E-13 129.2 23.4 276 371-710 606-916 (3245)
87 1qvr_A CLPB protein; coiled co 98.9 5.4E-09 1.8E-13 124.5 13.8 208 328-585 162-394 (854)
88 2p65_A Hypothetical protein PF 98.9 4.6E-10 1.6E-14 107.6 1.5 147 329-514 15-182 (187)
89 1jbk_A CLPB protein; beta barr 98.8 4E-10 1.4E-14 108.5 0.4 162 326-524 12-189 (195)
90 2gno_A DNA polymerase III, gam 98.8 1.6E-08 5.6E-13 105.1 12.0 126 340-509 1-132 (305)
91 1ypw_A Transitional endoplasmi 98.8 8.1E-10 2.8E-14 130.1 1.3 164 337-534 478-662 (806)
92 1ypw_A Transitional endoplasmi 98.6 4.6E-08 1.6E-12 115.2 8.3 164 336-533 204-385 (806)
93 2kjq_A DNAA-related protein; s 98.2 1.2E-06 4E-11 81.0 6.3 99 371-511 38-140 (149)
94 2qen_A Walker-type ATPase; unk 98.2 2.4E-05 8.2E-10 82.5 16.6 45 336-394 12-56 (350)
95 1tue_A Replication protein E1; 98.0 4.5E-06 1.5E-10 80.0 6.1 113 371-513 60-174 (212)
96 1u0j_A DNA replication protein 98.0 3.5E-05 1.2E-09 77.4 12.4 146 371-562 106-251 (267)
97 1jr3_D DNA polymerase III, del 98.0 2.2E-05 7.6E-10 83.0 10.2 178 371-632 20-208 (343)
98 3ec2_A DNA replication protein 97.8 3E-06 1E-10 80.8 0.9 101 371-488 40-145 (180)
99 2fna_A Conserved hypothetical 97.7 0.0015 5.2E-08 68.7 19.0 38 673-710 304-344 (357)
100 2r2a_A Uncharacterized protein 97.5 0.00018 6.2E-09 69.4 7.9 122 371-518 7-152 (199)
101 2qgz_A Helicase loader, putati 97.3 2.1E-05 7.2E-10 81.8 -1.2 24 371-394 154-177 (308)
102 2orw_A Thymidine kinase; TMTK, 97.0 0.00055 1.9E-08 65.2 4.7 26 434-459 77-102 (184)
103 2r8r_A Sensor protein; KDPD, P 96.5 0.0064 2.2E-07 59.3 8.3 27 367-393 4-30 (228)
104 3upu_A ATP-dependent DNA helic 96.4 0.0058 2E-07 67.0 8.3 87 371-458 47-153 (459)
105 1w36_D RECD, exodeoxyribonucle 96.3 0.0075 2.6E-07 68.6 8.6 38 341-393 151-188 (608)
106 3e1s_A Exodeoxyribonuclease V, 96.2 0.0032 1.1E-07 71.0 5.2 87 371-458 206-304 (574)
107 2w58_A DNAI, primosome compone 96.2 0.0026 8.8E-08 61.2 3.8 23 371-393 56-78 (202)
108 1qhx_A CPT, protein (chloramph 95.3 0.0099 3.4E-07 55.7 3.6 27 371-397 5-31 (178)
109 1kag_A SKI, shikimate kinase I 95.0 0.013 4.6E-07 54.5 3.7 25 371-395 6-30 (173)
110 3trf_A Shikimate kinase, SK; a 95.0 0.012 4.3E-07 55.4 3.3 28 371-398 7-34 (185)
111 3dl0_A Adenylate kinase; phosp 94.9 0.013 4.4E-07 56.9 3.2 28 371-398 2-29 (216)
112 1via_A Shikimate kinase; struc 94.8 0.011 3.7E-07 55.4 2.4 28 371-398 6-33 (175)
113 3kb2_A SPBC2 prophage-derived 94.8 0.015 5.2E-07 53.9 3.4 27 371-397 3-29 (173)
114 1zuh_A Shikimate kinase; alpha 94.7 0.015 5.1E-07 54.0 3.1 28 371-398 9-36 (168)
115 3vaa_A Shikimate kinase, SK; s 94.6 0.017 5.7E-07 55.4 3.3 27 371-397 27-53 (199)
116 2b8t_A Thymidine kinase; deoxy 94.6 0.019 6.6E-07 56.1 3.8 26 367-393 11-36 (223)
117 3sr0_A Adenylate kinase; phosp 94.6 0.014 4.7E-07 56.4 2.5 30 371-400 2-31 (206)
118 3iij_A Coilin-interacting nucl 94.5 0.014 4.9E-07 54.7 2.4 28 371-398 13-40 (180)
119 2fz4_A DNA repair protein RAD2 94.5 0.061 2.1E-06 53.1 7.1 24 371-394 110-133 (237)
120 2p5t_B PEZT; postsegregational 94.5 0.036 1.2E-06 55.4 5.5 24 371-394 34-57 (253)
121 1y63_A LMAJ004144AAA protein; 94.5 0.019 6.6E-07 54.2 3.3 27 371-397 12-39 (184)
122 3fb4_A Adenylate kinase; psych 94.4 0.016 5.4E-07 56.2 2.6 28 371-398 2-29 (216)
123 3lw7_A Adenylate kinase relate 94.3 0.02 6.8E-07 53.1 2.9 27 371-398 3-29 (179)
124 1ye8_A Protein THEP1, hypothet 94.3 0.021 7.2E-07 53.8 3.0 24 371-394 2-25 (178)
125 2cdn_A Adenylate kinase; phosp 94.3 0.028 9.7E-07 53.8 4.0 28 371-398 22-49 (201)
126 1kgd_A CASK, peripheral plasma 94.2 0.025 8.6E-07 53.2 3.5 24 371-394 7-30 (180)
127 1aky_A Adenylate kinase; ATP:A 94.2 0.02 6.9E-07 55.7 2.8 27 371-397 6-32 (220)
128 2iyv_A Shikimate kinase, SK; t 94.1 0.019 6.5E-07 54.1 2.4 28 371-398 4-31 (184)
129 1ly1_A Polynucleotide kinase; 94.1 0.021 7.3E-07 53.3 2.7 21 371-391 4-24 (181)
130 3jvv_A Twitching mobility prot 94.1 0.03 1E-06 58.9 4.0 24 371-394 125-148 (356)
131 1gvn_B Zeta; postsegregational 94.0 0.05 1.7E-06 55.4 5.5 24 371-394 35-58 (287)
132 2ze6_A Isopentenyl transferase 94.0 0.028 9.7E-07 56.2 3.5 28 371-398 3-30 (253)
133 3cm0_A Adenylate kinase; ATP-b 94.0 0.021 7.1E-07 53.8 2.3 26 371-396 6-31 (186)
134 2pt5_A Shikimate kinase, SK; a 93.9 0.028 9.7E-07 51.9 3.1 28 371-398 2-29 (168)
135 3tr0_A Guanylate kinase, GMP k 93.9 0.03 1E-06 53.6 3.3 24 371-394 9-32 (205)
136 2vli_A Antibiotic resistance p 93.9 0.028 9.6E-07 52.7 3.0 28 371-398 7-34 (183)
137 1e6c_A Shikimate kinase; phosp 93.8 0.029 9.9E-07 52.1 3.0 28 371-398 4-31 (173)
138 3t61_A Gluconokinase; PSI-biol 93.8 0.029 1E-06 53.7 3.0 25 371-395 20-44 (202)
139 3tlx_A Adenylate kinase 2; str 93.8 0.028 9.5E-07 55.8 2.9 29 371-399 31-59 (243)
140 1tev_A UMP-CMP kinase; ploop, 93.7 0.026 8.9E-07 53.4 2.5 27 371-397 5-31 (196)
141 2rhm_A Putative kinase; P-loop 93.6 0.034 1.1E-06 52.6 3.1 25 371-395 7-31 (193)
142 3tau_A Guanylate kinase, GMP k 93.6 0.033 1.1E-06 53.8 3.1 25 371-395 10-34 (208)
143 1e4v_A Adenylate kinase; trans 93.6 0.024 8.3E-07 54.9 2.1 28 371-398 2-29 (214)
144 1knq_A Gluconate kinase; ALFA/ 93.5 0.034 1.2E-06 51.8 2.9 24 371-394 10-33 (175)
145 3umf_A Adenylate kinase; rossm 93.5 0.027 9.1E-07 54.8 2.2 28 371-398 31-58 (217)
146 2c95_A Adenylate kinase 1; tra 93.5 0.028 9.6E-07 53.3 2.3 28 371-398 11-38 (196)
147 1htw_A HI0065; nucleotide-bind 93.5 0.044 1.5E-06 50.5 3.5 24 371-394 35-58 (158)
148 1ak2_A Adenylate kinase isoenz 93.5 0.03 1E-06 55.1 2.6 28 371-398 18-45 (233)
149 2jt1_A PEFI protein; solution 93.4 0.18 6.2E-06 40.0 6.5 58 651-711 4-61 (77)
150 4eun_A Thermoresistant glucoki 93.4 0.037 1.3E-06 53.0 3.0 24 371-394 31-54 (200)
151 1zd8_A GTP:AMP phosphotransfer 93.4 0.033 1.1E-06 54.5 2.6 28 371-398 9-36 (227)
152 2qor_A Guanylate kinase; phosp 93.3 0.041 1.4E-06 52.9 3.1 25 371-395 14-38 (204)
153 2bdt_A BH3686; alpha-beta prot 93.3 0.041 1.4E-06 52.0 3.1 23 371-393 4-26 (189)
154 1cke_A CK, MSSA, protein (cyti 93.3 0.034 1.2E-06 54.3 2.6 28 371-398 7-34 (227)
155 2xb4_A Adenylate kinase; ATP-b 93.3 0.034 1.2E-06 54.3 2.5 28 371-398 2-29 (223)
156 1zp6_A Hypothetical protein AT 93.2 0.033 1.1E-06 52.7 2.3 23 371-393 11-33 (191)
157 3be4_A Adenylate kinase; malar 93.2 0.031 1E-06 54.4 2.1 28 371-398 7-34 (217)
158 1ukz_A Uridylate kinase; trans 93.2 0.042 1.4E-06 52.6 3.0 28 371-398 17-44 (203)
159 2bwj_A Adenylate kinase 5; pho 93.2 0.03 1E-06 53.3 1.9 27 371-397 14-40 (199)
160 3nwj_A ATSK2; P loop, shikimat 93.1 0.041 1.4E-06 54.8 2.9 28 371-398 50-77 (250)
161 1kht_A Adenylate kinase; phosp 93.1 0.039 1.3E-06 52.0 2.7 24 371-394 5-28 (192)
162 1nks_A Adenylate kinase; therm 93.1 0.029 1E-06 53.0 1.8 24 371-394 3-26 (194)
163 2jaq_A Deoxyguanosine kinase; 93.1 0.046 1.6E-06 52.1 3.1 25 371-395 2-26 (205)
164 1qf9_A UMP/CMP kinase, protein 93.0 0.033 1.1E-06 52.6 1.9 28 371-398 8-35 (194)
165 3clv_A RAB5 protein, putative; 93.0 0.055 1.9E-06 51.2 3.5 28 365-392 3-30 (208)
166 2j41_A Guanylate kinase; GMP, 92.9 0.049 1.7E-06 52.1 3.1 23 371-393 8-30 (207)
167 3uie_A Adenylyl-sulfate kinase 92.9 0.039 1.3E-06 52.8 2.2 23 371-393 27-49 (200)
168 2bbw_A Adenylate kinase 4, AK4 92.8 0.039 1.3E-06 54.8 2.2 24 371-394 29-52 (246)
169 1zak_A Adenylate kinase; ATP:A 92.7 0.032 1.1E-06 54.4 1.4 25 371-395 7-31 (222)
170 2plr_A DTMP kinase, probable t 92.7 0.044 1.5E-06 52.7 2.4 24 371-394 6-29 (213)
171 2vhj_A Ntpase P4, P4; non- hyd 92.7 0.049 1.7E-06 56.0 2.8 22 371-392 125-146 (331)
172 1znw_A Guanylate kinase, GMP k 92.6 0.063 2.1E-06 51.7 3.3 24 371-394 22-45 (207)
173 3r20_A Cytidylate kinase; stru 92.6 0.051 1.7E-06 53.4 2.7 29 370-398 10-38 (233)
174 2ga8_A Hypothetical 39.9 kDa p 92.6 0.073 2.5E-06 55.5 3.9 26 371-396 26-51 (359)
175 3ney_A 55 kDa erythrocyte memb 92.5 0.071 2.4E-06 50.9 3.5 25 371-395 21-45 (197)
176 3vkw_A Replicase large subunit 92.5 0.018 6.2E-07 61.9 -0.8 26 434-459 235-260 (446)
177 1ex7_A Guanylate kinase; subst 92.4 0.087 3E-06 49.8 4.0 26 371-396 3-28 (186)
178 1s96_A Guanylate kinase, GMP k 92.4 0.069 2.4E-06 52.0 3.4 24 371-394 18-41 (219)
179 1upt_A ARL1, ADP-ribosylation 92.2 0.074 2.5E-06 48.8 3.2 26 367-392 5-30 (171)
180 4gp7_A Metallophosphoesterase; 92.2 0.055 1.9E-06 50.4 2.3 19 371-389 11-29 (171)
181 1z6g_A Guanylate kinase; struc 92.1 0.077 2.7E-06 51.6 3.3 24 371-394 25-48 (218)
182 3a00_A Guanylate kinase, GMP k 92.1 0.068 2.3E-06 50.5 2.7 24 371-394 3-26 (186)
183 4e22_A Cytidylate kinase; P-lo 92.0 0.076 2.6E-06 52.9 3.1 31 371-401 29-59 (252)
184 2if2_A Dephospho-COA kinase; a 91.9 0.068 2.3E-06 51.1 2.6 25 371-396 3-27 (204)
185 3crm_A TRNA delta(2)-isopenten 91.9 0.093 3.2E-06 54.1 3.7 29 371-399 7-35 (323)
186 4b3f_X DNA-binding protein smu 91.9 0.11 3.7E-06 59.5 4.7 37 343-393 193-230 (646)
187 2yvu_A Probable adenylyl-sulfa 91.9 0.075 2.6E-06 50.0 2.8 24 371-394 15-38 (186)
188 2v54_A DTMP kinase, thymidylat 91.8 0.085 2.9E-06 50.3 3.2 23 371-393 6-28 (204)
189 2cvh_A DNA repair and recombin 91.8 0.087 3E-06 50.8 3.3 21 371-391 22-42 (220)
190 2w0m_A SSO2452; RECA, SSPF, un 91.8 0.087 3E-06 51.2 3.3 23 371-393 25-47 (235)
191 3a4m_A L-seryl-tRNA(SEC) kinas 91.8 0.099 3.4E-06 52.3 3.8 22 371-392 6-27 (260)
192 2ehv_A Hypothetical protein PH 91.8 0.08 2.7E-06 52.2 3.0 20 371-390 32-51 (251)
193 3tqc_A Pantothenate kinase; bi 91.6 0.1 3.5E-06 53.8 3.7 80 306-394 32-117 (321)
194 1lvg_A Guanylate kinase, GMP k 91.6 0.074 2.5E-06 50.8 2.4 24 371-394 6-29 (198)
195 3b85_A Phosphate starvation-in 91.5 0.1 3.6E-06 50.3 3.4 22 371-392 24-45 (208)
196 2z0h_A DTMP kinase, thymidylat 91.5 0.095 3.2E-06 49.6 3.1 23 371-393 2-24 (197)
197 4a74_A DNA repair and recombin 91.4 0.085 2.9E-06 51.3 2.7 23 371-393 27-49 (231)
198 1n0w_A DNA repair protein RAD5 91.4 0.099 3.4E-06 51.3 3.2 22 371-392 26-47 (243)
199 2gza_A Type IV secretion syste 91.4 0.091 3.1E-06 55.4 3.1 24 371-394 177-200 (361)
200 2pbr_A DTMP kinase, thymidylat 91.3 0.091 3.1E-06 49.5 2.8 23 371-393 2-24 (195)
201 3ake_A Cytidylate kinase; CMP 91.3 0.08 2.8E-06 50.6 2.4 29 371-399 4-32 (208)
202 1jjv_A Dephospho-COA kinase; P 91.3 0.11 3.6E-06 49.9 3.2 25 371-396 4-28 (206)
203 2v9p_A Replication protein E1; 91.2 0.13 4.4E-06 52.7 3.9 23 371-393 128-150 (305)
204 3c8u_A Fructokinase; YP_612366 91.2 0.088 3E-06 50.7 2.5 24 371-394 24-47 (208)
205 3q85_A GTP-binding protein REM 91.1 0.097 3.3E-06 47.9 2.7 22 370-391 3-24 (169)
206 3a8t_A Adenylate isopentenyltr 91.1 0.15 5E-06 52.8 4.2 29 371-399 42-70 (339)
207 3oes_A GTPase rhebl1; small GT 91.1 0.085 2.9E-06 50.2 2.3 32 361-392 16-47 (201)
208 2oap_1 GSPE-2, type II secreti 91.1 0.14 4.8E-06 56.5 4.3 25 371-395 262-286 (511)
209 1zd9_A ADP-ribosylation factor 91.0 0.1 3.4E-06 49.1 2.7 29 364-392 17-45 (188)
210 1kao_A RAP2A; GTP-binding prot 91.0 0.1 3.6E-06 47.3 2.8 23 370-392 4-26 (167)
211 1g5t_A COB(I)alamin adenosyltr 91.0 0.049 1.7E-06 51.8 0.5 52 434-517 121-178 (196)
212 1nn5_A Similar to deoxythymidy 91.0 0.097 3.3E-06 50.3 2.6 23 371-393 11-33 (215)
213 2wwf_A Thymidilate kinase, put 90.9 0.09 3.1E-06 50.5 2.3 23 371-393 12-34 (212)
214 1z2a_A RAS-related protein RAB 90.9 0.11 3.8E-06 47.3 2.8 23 370-392 6-28 (168)
215 3lxx_A GTPase IMAP family memb 90.8 0.36 1.2E-05 47.3 6.7 25 369-393 29-53 (239)
216 1ek0_A Protein (GTP-binding pr 90.7 0.11 3.9E-06 47.3 2.7 23 370-392 4-26 (170)
217 3lnc_A Guanylate kinase, GMP k 90.7 0.081 2.8E-06 51.8 1.8 25 371-395 29-54 (231)
218 1ky3_A GTP-binding protein YPT 90.7 0.12 4.1E-06 47.8 2.9 25 368-392 7-31 (182)
219 2erx_A GTP-binding protein DI- 90.6 0.11 3.8E-06 47.5 2.6 22 370-391 4-25 (172)
220 1uj2_A Uridine-cytidine kinase 90.6 0.14 4.7E-06 50.9 3.4 26 370-395 23-48 (252)
221 1z0j_A RAB-22, RAS-related pro 90.6 0.12 4.3E-06 47.1 2.9 23 370-392 7-29 (170)
222 1nrj_B SR-beta, signal recogni 90.5 0.13 4.5E-06 49.5 3.1 25 369-393 12-36 (218)
223 1u8z_A RAS-related protein RAL 90.5 0.13 4.4E-06 46.8 2.8 23 370-392 5-27 (168)
224 3sop_A Neuronal-specific septi 90.5 0.1 3.5E-06 52.6 2.3 25 370-394 3-27 (270)
225 1r8s_A ADP-ribosylation factor 90.4 0.13 4.4E-06 46.7 2.8 22 371-392 2-23 (164)
226 2pez_A Bifunctional 3'-phospho 90.4 0.13 4.4E-06 48.0 2.9 23 371-393 7-29 (179)
227 2nzj_A GTP-binding protein REM 90.4 0.12 4.2E-06 47.4 2.7 22 370-391 5-26 (175)
228 2qmh_A HPR kinase/phosphorylas 90.4 0.15 5.1E-06 48.5 3.2 24 371-394 36-59 (205)
229 2f9l_A RAB11B, member RAS onco 90.4 0.12 4.3E-06 49.0 2.8 24 370-393 6-29 (199)
230 1z08_A RAS-related protein RAB 90.4 0.13 4.5E-06 47.0 2.8 24 369-392 6-29 (170)
231 3tif_A Uncharacterized ABC tra 90.4 0.11 3.6E-06 51.3 2.3 23 371-393 33-55 (235)
232 1sgw_A Putative ABC transporte 90.4 0.11 3.7E-06 50.4 2.3 23 371-393 37-59 (214)
233 3t1o_A Gliding protein MGLA; G 90.3 0.14 4.7E-06 48.2 3.0 25 369-393 14-38 (198)
234 1wms_A RAB-9, RAB9, RAS-relate 90.3 0.13 4.6E-06 47.3 2.9 24 369-392 7-30 (177)
235 1c1y_A RAS-related protein RAP 90.3 0.13 4.5E-06 46.8 2.7 23 370-392 4-26 (167)
236 2pcj_A ABC transporter, lipopr 90.3 0.092 3.2E-06 51.3 1.8 23 371-393 32-54 (224)
237 2ged_A SR-beta, signal recogni 90.3 0.15 5E-06 47.9 3.2 24 370-393 49-72 (193)
238 2h92_A Cytidylate kinase; ross 90.3 0.15 5.1E-06 49.3 3.3 30 371-400 5-34 (219)
239 2dyk_A GTP-binding protein; GT 90.2 0.14 4.8E-06 46.3 2.9 22 371-392 3-24 (161)
240 1uf9_A TT1252 protein; P-loop, 90.2 0.16 5.3E-06 48.3 3.3 27 371-398 10-36 (203)
241 2ce2_X GTPase HRAS; signaling 90.2 0.12 4.1E-06 46.8 2.3 23 370-392 4-26 (166)
242 2qt1_A Nicotinamide riboside k 90.2 0.12 4.2E-06 49.5 2.5 24 371-394 23-46 (207)
243 3foz_A TRNA delta(2)-isopenten 90.1 0.21 7.3E-06 50.9 4.3 29 371-399 12-40 (316)
244 1m7b_A RND3/RHOE small GTP-bin 90.1 0.12 4.1E-06 48.3 2.3 24 369-392 7-30 (184)
245 1m7g_A Adenylylsulfate kinase; 90.1 0.11 3.9E-06 49.9 2.2 24 371-394 27-50 (211)
246 2zej_A Dardarin, leucine-rich 90.1 0.11 3.9E-06 48.5 2.2 22 370-391 3-24 (184)
247 1svm_A Large T antigen; AAA+ f 90.1 0.15 5E-06 54.0 3.2 24 371-394 171-194 (377)
248 2grj_A Dephospho-COA kinase; T 90.0 0.13 4.5E-06 48.9 2.5 28 371-398 14-41 (192)
249 2hxs_A RAB-26, RAS-related pro 90.0 0.15 5E-06 47.1 2.8 24 369-392 6-29 (178)
250 1r2q_A RAS-related protein RAB 90.0 0.15 5E-06 46.5 2.8 24 369-392 6-29 (170)
251 3exa_A TRNA delta(2)-isopenten 90.0 0.16 5.6E-06 51.9 3.3 27 371-397 5-31 (322)
252 1g16_A RAS-related protein SEC 89.9 0.13 4.3E-06 47.0 2.3 23 370-392 4-26 (170)
253 1b0u_A Histidine permease; ABC 89.9 0.12 4E-06 51.9 2.2 24 371-394 34-57 (262)
254 1ltq_A Polynucleotide kinase; 89.8 0.14 4.7E-06 52.3 2.7 23 371-393 4-26 (301)
255 2dr3_A UPF0273 protein PH0284; 89.8 0.15 5E-06 50.2 2.8 22 371-392 25-46 (247)
256 3bc1_A RAS-related protein RAB 89.8 0.15 5.2E-06 47.6 2.8 24 369-392 11-34 (195)
257 2pt7_A CAG-ALFA; ATPase, prote 89.8 0.17 5.8E-06 52.6 3.4 25 371-395 173-197 (330)
258 2gk6_A Regulator of nonsense t 89.8 0.21 7.3E-06 56.7 4.5 22 371-392 197-218 (624)
259 2i3b_A HCR-ntpase, human cance 89.8 0.16 5.3E-06 48.2 2.8 23 371-393 3-25 (189)
260 3gfo_A Cobalt import ATP-bindi 89.8 0.13 4.3E-06 52.0 2.3 24 371-394 36-59 (275)
261 1g6h_A High-affinity branched- 89.8 0.12 4.3E-06 51.5 2.3 23 371-393 35-57 (257)
262 2cbz_A Multidrug resistance-as 89.8 0.1 3.5E-06 51.5 1.6 23 371-393 33-55 (237)
263 3asz_A Uridine kinase; cytidin 89.7 0.13 4.4E-06 49.4 2.3 24 371-394 8-31 (211)
264 1cr0_A DNA primase/helicase; R 89.7 0.14 4.6E-06 52.3 2.6 23 371-393 37-59 (296)
265 1qbj_A Protein (double-strande 89.7 1.3 4.4E-05 35.4 7.7 37 671-710 27-63 (81)
266 2zts_A Putative uncharacterize 89.7 0.16 5.5E-06 49.9 3.0 21 371-391 32-52 (251)
267 1q3t_A Cytidylate kinase; nucl 89.7 0.16 5.6E-06 49.8 3.0 29 371-399 18-46 (236)
268 3c5c_A RAS-like protein 12; GD 89.7 0.16 5.5E-06 47.6 2.9 26 367-392 19-44 (187)
269 2qi9_C Vitamin B12 import ATP- 89.7 0.13 4.3E-06 51.2 2.2 23 371-393 28-50 (249)
270 3q72_A GTP-binding protein RAD 89.7 0.12 4.2E-06 47.0 2.0 21 370-390 3-23 (166)
271 1z0f_A RAB14, member RAS oncog 89.6 0.16 5.6E-06 46.7 2.8 24 369-392 15-38 (179)
272 2pze_A Cystic fibrosis transme 89.6 0.13 4.6E-06 50.3 2.3 24 371-394 36-59 (229)
273 2ff7_A Alpha-hemolysin translo 89.6 0.13 4.5E-06 51.0 2.3 23 371-393 37-59 (247)
274 1nlf_A Regulatory protein REPA 89.6 0.13 4.5E-06 52.0 2.3 26 367-393 29-54 (279)
275 2wji_A Ferrous iron transport 89.5 0.16 5.4E-06 46.5 2.7 22 371-392 5-26 (165)
276 1z6t_A APAF-1, apoptotic prote 89.5 0.3 1E-05 55.1 5.4 46 336-391 124-169 (591)
277 3d3q_A TRNA delta(2)-isopenten 89.5 0.2 6.9E-06 52.0 3.6 27 371-397 9-35 (340)
278 4dsu_A GTPase KRAS, isoform 2B 89.5 0.16 5.6E-06 47.2 2.8 23 370-392 5-27 (189)
279 2lkc_A Translation initiation 89.5 0.17 5.9E-06 46.6 2.9 24 369-392 8-31 (178)
280 1vpl_A ABC transporter, ATP-bi 89.5 0.14 4.7E-06 51.2 2.3 23 371-393 43-65 (256)
281 2olj_A Amino acid ABC transpor 89.5 0.14 4.7E-06 51.4 2.3 23 371-393 52-74 (263)
282 1vht_A Dephospho-COA kinase; s 89.4 0.23 7.8E-06 48.0 3.9 27 371-398 6-32 (218)
283 1ji0_A ABC transporter; ATP bi 89.4 0.14 4.7E-06 50.6 2.3 23 371-393 34-56 (240)
284 2eyu_A Twitching motility prot 89.4 0.16 5.6E-06 50.8 2.8 23 371-393 27-49 (261)
285 3lxw_A GTPase IMAP family memb 89.4 0.56 1.9E-05 46.4 6.7 27 367-393 19-45 (247)
286 2a5y_B CED-4; apoptosis; HET: 89.4 0.24 8.3E-06 55.4 4.5 44 339-391 131-174 (549)
287 2oil_A CATX-8, RAS-related pro 89.4 0.17 5.7E-06 47.6 2.8 24 369-392 25-48 (193)
288 3ihw_A Centg3; RAS, centaurin, 89.4 0.18 6.3E-06 47.2 3.0 26 367-392 18-43 (184)
289 2g6b_A RAS-related protein RAB 89.3 0.17 5.8E-06 46.8 2.7 25 368-392 9-33 (180)
290 3tw8_B RAS-related protein RAB 89.3 0.16 5.5E-06 46.8 2.5 22 369-390 9-30 (181)
291 1z06_A RAS-related protein RAB 89.3 0.18 6.2E-06 47.2 2.9 26 367-392 18-43 (189)
292 2efe_B Small GTP-binding prote 89.2 0.18 6E-06 46.7 2.8 24 369-392 12-35 (181)
293 2iwr_A Centaurin gamma 1; ANK 89.2 0.18 6.3E-06 46.5 2.9 24 369-392 7-30 (178)
294 2gf0_A GTP-binding protein DI- 89.2 0.17 5.7E-06 47.7 2.6 25 368-392 7-31 (199)
295 3hr8_A Protein RECA; alpha and 89.2 0.16 5.4E-06 53.3 2.6 23 371-393 63-85 (356)
296 2ihy_A ABC transporter, ATP-bi 89.2 0.15 5.1E-06 51.6 2.3 24 371-394 49-72 (279)
297 2bov_A RAla, RAS-related prote 89.1 0.19 6.5E-06 47.6 3.0 25 368-392 13-37 (206)
298 1oix_A RAS-related protein RAB 89.1 0.16 5.4E-06 48.0 2.4 24 370-393 30-53 (191)
299 2nq2_C Hypothetical ABC transp 89.1 0.15 5.2E-06 50.8 2.3 24 371-394 33-56 (253)
300 3kta_A Chromosome segregation 89.1 0.17 6E-06 47.2 2.6 23 372-394 29-51 (182)
301 3kkq_A RAS-related protein M-R 89.1 0.19 6.4E-06 46.7 2.8 24 369-392 18-41 (183)
302 2gj8_A MNME, tRNA modification 89.1 0.16 5.3E-06 47.1 2.2 22 371-392 6-27 (172)
303 2atv_A RERG, RAS-like estrogen 89.0 0.2 6.9E-06 47.2 3.1 24 369-392 28-51 (196)
304 3con_A GTPase NRAS; structural 89.0 0.18 6.3E-06 47.1 2.7 24 369-392 21-44 (190)
305 1mv5_A LMRA, multidrug resista 89.0 0.14 4.8E-06 50.7 2.0 24 371-394 30-53 (243)
306 1ksh_A ARF-like protein 2; sma 89.0 0.18 6.2E-06 47.0 2.7 23 369-391 18-40 (186)
307 1mh1_A RAC1; GTP-binding, GTPa 89.0 0.19 6.4E-06 46.7 2.7 23 370-392 6-28 (186)
308 2y8e_A RAB-protein 6, GH09086P 88.9 0.16 5.5E-06 46.8 2.2 23 370-392 15-37 (179)
309 2onk_A Molybdate/tungstate ABC 88.9 0.17 6E-06 49.9 2.6 24 371-394 26-49 (240)
310 2wjg_A FEOB, ferrous iron tran 88.9 0.21 7.3E-06 46.5 3.1 23 370-392 8-30 (188)
311 4g1u_C Hemin import ATP-bindin 88.9 0.15 5.2E-06 51.2 2.1 23 371-393 39-61 (266)
312 1gtv_A TMK, thymidylate kinase 88.9 0.091 3.1E-06 50.5 0.5 24 371-394 2-25 (214)
313 3bwd_D RAC-like GTP-binding pr 88.9 0.21 7.2E-06 46.2 3.0 24 369-392 8-31 (182)
314 2ixe_A Antigen peptide transpo 88.9 0.16 5.4E-06 51.2 2.3 23 371-393 47-69 (271)
315 3reg_A RHO-like small GTPase; 88.8 0.19 6.4E-06 47.3 2.7 25 368-392 22-46 (194)
316 3cph_A RAS-related protein SEC 88.8 0.2 6.8E-06 47.8 2.9 26 367-392 18-43 (213)
317 1xx6_A Thymidine kinase; NESG, 88.8 0.38 1.3E-05 45.6 4.8 25 434-458 82-106 (191)
318 2yz2_A Putative ABC transporte 88.8 0.16 5.3E-06 51.1 2.1 24 371-394 35-58 (266)
319 2ghi_A Transport protein; mult 88.7 0.16 5.3E-06 50.9 2.1 23 371-393 48-70 (260)
320 2fn4_A P23, RAS-related protei 88.7 0.18 6E-06 46.6 2.4 23 370-392 10-32 (181)
321 1vg8_A RAS-related protein RAB 88.7 0.21 7.1E-06 47.4 2.9 24 369-392 8-31 (207)
322 2gf9_A RAS-related protein RAB 88.6 0.21 7.2E-06 46.8 2.8 24 369-392 22-45 (189)
323 2a9k_A RAS-related protein RAL 88.5 0.22 7.4E-06 46.2 2.8 24 369-392 18-41 (187)
324 2wjy_A Regulator of nonsense t 88.4 0.3 1E-05 57.0 4.5 22 371-392 373-394 (800)
325 4eaq_A DTMP kinase, thymidylat 88.4 0.19 6.5E-06 49.2 2.4 24 371-394 28-51 (229)
326 2bme_A RAB4A, RAS-related prot 88.3 0.19 6.5E-06 46.8 2.3 24 369-392 10-33 (186)
327 1zj6_A ADP-ribosylation factor 88.3 0.2 6.7E-06 46.9 2.4 22 370-391 17-38 (187)
328 3tkl_A RAS-related protein RAB 88.3 0.22 7.6E-06 46.7 2.8 24 369-392 16-39 (196)
329 2p5s_A RAS and EF-hand domain 88.3 0.23 7.8E-06 47.1 2.9 26 367-392 26-51 (199)
330 2cxx_A Probable GTP-binding pr 88.3 0.17 5.9E-06 47.2 2.0 22 371-392 3-24 (190)
331 2zu0_C Probable ATP-dependent 88.2 0.22 7.6E-06 50.0 2.8 22 371-392 48-69 (267)
332 1svi_A GTP-binding protein YSX 88.2 0.18 6.2E-06 47.4 2.1 24 369-392 23-46 (195)
333 2px0_A Flagellar biosynthesis 88.2 0.53 1.8E-05 48.0 5.7 23 371-393 107-129 (296)
334 2d2e_A SUFC protein; ABC-ATPas 88.2 0.22 7.6E-06 49.5 2.8 22 371-392 31-52 (250)
335 1m2o_B GTP-binding protein SAR 88.1 0.2 6.8E-06 47.2 2.3 22 371-392 25-46 (190)
336 1x3s_A RAS-related protein RAB 88.1 0.23 8E-06 46.4 2.8 24 369-392 15-38 (195)
337 3d31_A Sulfate/molybdate ABC t 88.1 0.22 7.4E-06 52.1 2.7 24 371-394 28-51 (348)
338 2a5j_A RAS-related protein RAB 88.1 0.23 8E-06 46.6 2.8 25 368-392 20-44 (191)
339 1pzn_A RAD51, DNA repair and r 88.0 0.22 7.4E-06 52.2 2.7 23 371-393 133-155 (349)
340 1moz_A ARL1, ADP-ribosylation 88.0 0.15 5E-06 47.4 1.3 22 369-390 18-39 (183)
341 1z47_A CYSA, putative ABC-tran 88.0 0.21 7.3E-06 52.2 2.6 24 371-394 43-66 (355)
342 2b6h_A ADP-ribosylation factor 88.0 0.2 6.9E-06 47.2 2.3 23 368-390 28-50 (192)
343 2fg5_A RAB-22B, RAS-related pr 88.0 0.21 7.1E-06 47.0 2.4 24 369-392 23-46 (192)
344 1zbd_A Rabphilin-3A; G protein 88.0 0.23 7.8E-06 47.1 2.7 23 370-392 9-31 (203)
345 3h1t_A Type I site-specific re 88.0 0.96 3.3E-05 50.9 8.3 21 371-391 200-220 (590)
346 2fh5_B SR-beta, signal recogni 88.0 0.24 8.2E-06 47.4 2.8 24 369-392 7-30 (214)
347 1fzq_A ADP-ribosylation factor 87.9 0.21 7.1E-06 46.6 2.3 23 369-391 16-38 (181)
348 3dz8_A RAS-related protein RAB 87.8 0.22 7.4E-06 46.8 2.3 26 368-393 22-47 (191)
349 3q3j_B RHO-related GTP-binding 87.7 0.26 8.8E-06 47.4 2.9 26 367-392 25-50 (214)
350 1rj9_A FTSY, signal recognitio 87.7 0.27 9.1E-06 50.4 3.1 23 371-393 104-126 (304)
351 2it1_A 362AA long hypothetical 87.7 0.23 7.9E-06 52.1 2.7 24 371-394 31-54 (362)
352 1rz3_A Hypothetical protein rb 87.7 0.22 7.6E-06 47.5 2.4 23 371-393 24-46 (201)
353 3t5g_A GTP-binding protein RHE 87.7 0.2 6.8E-06 46.4 2.0 23 369-391 6-28 (181)
354 2yyz_A Sugar ABC transporter, 87.6 0.23 7.9E-06 52.1 2.6 24 371-394 31-54 (359)
355 2zr9_A Protein RECA, recombina 87.6 0.24 8.2E-06 51.9 2.8 23 371-393 63-85 (349)
356 2q3h_A RAS homolog gene family 87.6 0.25 8.7E-06 46.6 2.8 25 367-391 18-42 (201)
357 2cjw_A GTP-binding protein GEM 87.6 0.26 9E-06 46.5 2.8 23 370-392 7-29 (192)
358 3rlf_A Maltose/maltodextrin im 87.6 0.24 8.1E-06 52.3 2.7 24 371-394 31-54 (381)
359 2bcg_Y Protein YP2, GTP-bindin 87.6 0.22 7.6E-06 47.3 2.3 24 369-392 8-31 (206)
360 3fvq_A Fe(3+) IONS import ATP- 87.6 0.21 7.2E-06 52.3 2.3 24 371-394 32-55 (359)
361 1w4r_A Thymidine kinase; type 87.6 0.15 5E-06 48.4 0.9 26 367-393 19-45 (195)
362 1v5w_A DMC1, meiotic recombina 87.6 0.27 9.3E-06 51.3 3.1 22 371-392 124-145 (343)
363 3pqc_A Probable GTP-binding pr 87.5 0.27 9.2E-06 46.0 2.8 25 368-392 22-46 (195)
364 1oxx_K GLCV, glucose, ABC tran 87.5 0.22 7.4E-06 52.2 2.3 24 371-394 33-56 (353)
365 1v43_A Sugar-binding transport 87.5 0.24 8.3E-06 52.2 2.7 24 371-394 39-62 (372)
366 2jeo_A Uridine-cytidine kinase 87.4 0.28 9.5E-06 48.5 2.9 24 371-394 27-50 (245)
367 2fu5_C RAS-related protein RAB 87.3 0.17 5.9E-06 47.0 1.3 22 370-391 9-30 (183)
368 2xtp_A GTPase IMAP family memb 87.3 0.69 2.3E-05 45.9 5.8 24 369-392 22-45 (260)
369 3io5_A Recombination and repai 87.3 0.25 8.5E-06 50.6 2.5 25 366-392 27-51 (333)
370 1lw7_A Transcriptional regulat 87.3 0.3 1E-05 51.4 3.3 24 371-394 172-195 (365)
371 2il1_A RAB12; G-protein, GDP, 87.3 0.25 8.7E-06 46.4 2.5 23 369-391 26-48 (192)
372 1g29_1 MALK, maltose transport 87.3 0.25 8.6E-06 52.1 2.6 24 371-394 31-54 (372)
373 3aez_A Pantothenate kinase; tr 87.2 0.27 9.3E-06 50.5 2.8 24 371-394 92-115 (312)
374 3zvl_A Bifunctional polynucleo 87.2 0.22 7.5E-06 53.6 2.2 24 371-394 260-283 (416)
375 1sq5_A Pantothenate kinase; P- 87.1 0.29 9.9E-06 50.3 2.9 24 371-394 82-105 (308)
376 1gwn_A RHO-related GTP-binding 87.0 0.25 8.6E-06 47.2 2.3 24 369-392 28-51 (205)
377 2z43_A DNA repair and recombin 87.0 0.29 9.8E-06 50.7 2.9 23 371-393 109-131 (324)
378 3cbq_A GTP-binding protein REM 87.0 0.23 7.8E-06 47.0 2.0 22 369-390 23-44 (195)
379 2ew1_A RAS-related protein RAB 87.0 0.25 8.7E-06 47.1 2.3 24 369-392 26-49 (201)
380 2ewv_A Twitching motility prot 86.9 0.29 1E-05 51.7 2.9 24 371-394 138-161 (372)
381 3b9q_A Chloroplast SRP recepto 86.9 0.7 2.4E-05 47.2 5.7 23 371-393 102-124 (302)
382 2gmg_A Hypothetical protein PF 86.9 0.55 1.9E-05 39.0 3.9 33 171-210 63-95 (105)
383 3e70_C DPA, signal recognition 86.9 0.3 1E-05 50.6 3.0 23 371-393 131-153 (328)
384 3llu_A RAS-related GTP-binding 86.8 0.26 8.9E-06 46.5 2.3 25 368-392 19-43 (196)
385 2h17_A ADP-ribosylation factor 86.7 0.21 7.3E-06 46.4 1.6 25 368-392 20-44 (181)
386 2f7s_A C25KG, RAS-related prot 86.7 0.3 1E-05 46.9 2.7 23 369-391 25-47 (217)
387 2f6r_A COA synthase, bifunctio 86.7 0.29 1E-05 49.5 2.7 22 371-392 77-98 (281)
388 1p9r_A General secretion pathw 86.7 0.27 9.2E-06 52.8 2.5 24 371-394 169-192 (418)
389 2xvc_A ESCRT-III, SSO0910; cel 86.7 2 6.7E-05 31.2 6.1 46 654-707 13-58 (59)
390 2bbs_A Cystic fibrosis transme 86.6 0.21 7.3E-06 50.8 1.6 24 371-394 66-89 (290)
391 2o52_A RAS-related protein RAB 86.6 0.26 8.9E-06 46.8 2.1 24 368-391 24-47 (200)
392 3cuq_B Vacuolar protein-sortin 86.5 5.1 0.00018 38.5 11.3 125 570-715 75-209 (218)
393 2j0v_A RAC-like GTP-binding pr 86.4 0.34 1.2E-05 46.3 2.9 24 369-392 9-32 (212)
394 2f1r_A Molybdopterin-guanine d 86.4 0.26 9E-06 45.8 2.0 24 371-394 4-27 (171)
395 2xzl_A ATP-dependent helicase 86.3 0.44 1.5E-05 55.7 4.3 21 371-391 377-397 (802)
396 1vma_A Cell division protein F 86.3 1.3 4.6E-05 45.2 7.4 23 371-393 106-128 (306)
397 3eph_A TRNA isopentenyltransfe 86.2 0.29 1E-05 51.8 2.5 29 371-399 4-32 (409)
398 2atx_A Small GTP binding prote 86.2 0.3 1E-05 45.9 2.4 25 368-392 17-41 (194)
399 3lda_A DNA repair protein RAD5 86.2 0.29 1E-05 52.2 2.5 24 367-391 177-200 (400)
400 2j1l_A RHO-related GTP-binding 86.2 0.29 9.9E-06 47.0 2.3 23 369-391 34-56 (214)
401 2fv8_A H6, RHO-related GTP-bin 86.2 0.29 9.9E-06 46.7 2.3 24 369-392 25-48 (207)
402 2hup_A RAS-related protein RAB 86.2 0.3 1E-05 46.4 2.4 24 369-392 29-52 (201)
403 2x77_A ADP-ribosylation factor 86.2 0.21 7.3E-06 46.7 1.3 21 369-389 22-42 (189)
404 3e2i_A Thymidine kinase; Zn-bi 86.2 1.2 3.9E-05 42.9 6.4 88 367-460 27-128 (219)
405 4gzl_A RAS-related C3 botulinu 86.2 0.31 1E-05 46.5 2.4 24 369-392 30-53 (204)
406 3tqf_A HPR(Ser) kinase; transf 86.1 0.3 1E-05 45.2 2.2 22 371-392 18-39 (181)
407 2h57_A ADP-ribosylation factor 86.1 0.24 8.3E-06 46.4 1.6 24 368-391 20-43 (190)
408 2gco_A H9, RHO-related GTP-bin 86.1 0.29 1E-05 46.4 2.2 24 369-392 25-48 (201)
409 1u94_A RECA protein, recombina 86.0 0.39 1.3E-05 50.3 3.3 23 371-393 65-87 (356)
410 1odf_A YGR205W, hypothetical 3 85.9 0.3 1E-05 49.6 2.3 24 371-394 33-56 (290)
411 3cpj_B GTP-binding protein YPT 85.8 0.36 1.2E-05 46.6 2.8 23 370-392 14-36 (223)
412 2j9r_A Thymidine kinase; TK1, 85.8 0.87 3E-05 43.8 5.3 24 434-457 102-125 (214)
413 3bh0_A DNAB-like replicative h 85.8 0.4 1.4E-05 49.4 3.2 22 371-392 70-91 (315)
414 3tui_C Methionine import ATP-b 85.8 0.36 1.2E-05 50.6 2.8 24 371-394 56-79 (366)
415 1xn7_A Hypothetical protein YH 85.8 2.3 7.8E-05 33.6 6.9 44 659-707 6-49 (78)
416 2og2_A Putative signal recogni 85.7 0.37 1.3E-05 50.5 2.9 23 371-393 159-181 (359)
417 2i1q_A DNA repair and recombin 85.6 0.31 1.1E-05 50.3 2.3 22 371-392 100-121 (322)
418 2qm8_A GTPase/ATPase; G protei 85.6 0.35 1.2E-05 50.3 2.7 23 371-393 57-79 (337)
419 1tq4_A IIGP1, interferon-induc 85.6 0.54 1.8E-05 50.3 4.1 24 371-394 71-94 (413)
420 3ice_A Transcription terminati 85.5 0.58 2E-05 49.2 4.2 23 371-393 176-198 (422)
421 3gmt_A Adenylate kinase; ssgci 85.5 0.34 1.2E-05 47.2 2.4 28 371-398 10-37 (230)
422 3nh6_A ATP-binding cassette SU 85.5 0.31 1.1E-05 49.9 2.2 23 371-393 82-104 (306)
423 3a1s_A Iron(II) transport prot 85.4 0.37 1.2E-05 48.1 2.6 23 370-392 6-28 (258)
424 3k53_A Ferrous iron transport 85.3 0.32 1.1E-05 48.8 2.2 22 371-392 5-26 (271)
425 2vp4_A Deoxynucleoside kinase; 85.3 0.33 1.1E-05 47.4 2.2 22 371-392 22-43 (230)
426 1f2t_A RAD50 ABC-ATPase; DNA d 85.3 0.4 1.4E-05 43.4 2.6 22 372-393 26-47 (149)
427 2g3y_A GTP-binding protein GEM 85.3 0.4 1.4E-05 46.2 2.7 22 369-390 37-58 (211)
428 2qnr_A Septin-2, protein NEDD5 85.3 0.29 9.8E-06 50.1 1.8 22 371-392 20-41 (301)
429 1xjc_A MOBB protein homolog; s 85.3 0.36 1.2E-05 44.7 2.3 23 371-393 6-28 (169)
430 3l0o_A Transcription terminati 85.2 0.5 1.7E-05 49.6 3.5 23 371-393 177-199 (427)
431 1f6b_A SAR1; gtpases, N-termin 85.2 0.29 1E-05 46.4 1.7 20 371-390 27-46 (198)
432 2qag_B Septin-6, protein NEDD5 85.1 0.33 1.1E-05 52.0 2.2 23 371-393 44-66 (427)
433 4bas_A ADP-ribosylation factor 85.1 0.38 1.3E-05 45.2 2.5 23 369-391 17-39 (199)
434 2yc2_C IFT27, small RAB-relate 85.0 0.22 7.4E-06 47.3 0.7 25 368-392 19-43 (208)
435 1pui_A ENGB, probable GTP-bind 85.0 0.24 8E-06 47.3 0.9 23 370-392 27-49 (210)
436 4dkx_A RAS-related protein RAB 84.8 0.45 1.5E-05 46.0 2.9 22 370-391 14-35 (216)
437 2yhs_A FTSY, cell division pro 84.8 0.43 1.5E-05 52.0 3.0 23 371-393 295-317 (503)
438 2qu8_A Putative nucleolar GTP- 84.6 0.43 1.5E-05 46.3 2.7 22 370-391 30-51 (228)
439 3cr8_A Sulfate adenylyltranfer 84.6 0.57 2E-05 52.1 4.0 24 371-394 371-394 (552)
440 3gd7_A Fusion complex of cysti 84.6 0.3 1E-05 51.9 1.6 24 371-394 49-72 (390)
441 1bif_A 6-phosphofructo-2-kinas 84.6 0.45 1.5E-05 52.0 3.1 24 370-393 40-63 (469)
442 2pjz_A Hypothetical protein ST 84.6 0.32 1.1E-05 48.7 1.8 23 371-393 32-54 (263)
443 1np6_A Molybdopterin-guanine d 84.6 0.48 1.6E-05 44.1 2.8 23 371-393 8-30 (174)
444 3fdi_A Uncharacterized protein 84.5 0.54 1.8E-05 44.9 3.2 29 371-399 8-36 (201)
445 2npi_A Protein CLP1; CLP1-PCF1 84.5 0.39 1.3E-05 52.2 2.5 24 371-394 140-163 (460)
446 1qhl_A Protein (cell division 84.3 0.24 8.1E-06 48.4 0.6 23 372-394 30-52 (227)
447 3llm_A ATP-dependent RNA helic 84.3 0.65 2.2E-05 45.4 3.8 19 371-389 78-96 (235)
448 2obl_A ESCN; ATPase, hydrolase 84.2 0.47 1.6E-05 49.6 2.9 24 371-394 73-96 (347)
449 4ag6_A VIRB4 ATPase, type IV s 84.2 0.51 1.7E-05 50.2 3.2 26 368-393 34-59 (392)
450 3r7w_A Gtpase1, GTP-binding pr 84.2 0.47 1.6E-05 48.6 2.8 23 370-392 4-26 (307)
451 2qag_C Septin-7; cell cycle, c 84.1 0.39 1.3E-05 51.5 2.3 23 371-393 33-55 (418)
452 3b1v_A Ferrous iron uptake tra 84.1 0.47 1.6E-05 47.7 2.7 22 371-392 5-26 (272)
453 2axn_A 6-phosphofructo-2-kinas 83.8 0.41 1.4E-05 53.0 2.3 23 371-393 37-59 (520)
454 3cmw_A Protein RECA, recombina 83.7 0.5 1.7E-05 59.1 3.3 22 372-393 1085-1106(1706)
455 3t5d_A Septin-7; GTP-binding p 83.7 0.4 1.4E-05 48.2 2.0 22 369-390 8-29 (274)
456 1p5z_B DCK, deoxycytidine kina 83.7 0.3 1E-05 48.7 1.1 24 371-394 26-49 (263)
457 2hf9_A Probable hydrogenase ni 83.6 0.49 1.7E-05 45.7 2.6 23 371-393 40-62 (226)
458 1g8f_A Sulfate adenylyltransfe 83.6 0.81 2.8E-05 50.2 4.5 50 335-394 371-420 (511)
459 3th5_A RAS-related C3 botulinu 83.7 0.23 8E-06 47.1 0.0 23 369-391 30-52 (204)
460 1xp8_A RECA protein, recombina 83.0 0.52 1.8E-05 49.6 2.6 26 367-393 73-98 (366)
461 2ocp_A DGK, deoxyguanosine kin 82.9 0.55 1.9E-05 46.1 2.6 24 371-394 4-27 (241)
462 3v9p_A DTMP kinase, thymidylat 82.9 0.47 1.6E-05 46.3 2.1 24 371-394 27-50 (227)
463 3lv8_A DTMP kinase, thymidylat 82.8 0.46 1.6E-05 46.7 2.0 23 371-393 29-51 (236)
464 2wsm_A Hydrogenase expression/ 82.8 0.51 1.7E-05 45.4 2.3 23 371-393 32-54 (221)
465 2fu4_A Ferric uptake regulatio 82.8 2.7 9.4E-05 33.3 6.4 45 671-715 33-80 (83)
466 4dhe_A Probable GTP-binding pr 82.8 0.44 1.5E-05 45.8 1.9 24 369-392 29-52 (223)
467 2r6a_A DNAB helicase, replicat 82.7 0.67 2.3E-05 50.3 3.4 23 371-393 205-227 (454)
468 1c9k_A COBU, adenosylcobinamid 82.6 0.51 1.7E-05 44.2 2.1 21 372-392 2-22 (180)
469 3i8s_A Ferrous iron transport 82.1 0.53 1.8E-05 47.3 2.2 23 370-392 4-26 (274)
470 1sfu_A 34L protein; protein/Z- 82.1 7.4 0.00025 30.3 8.1 57 656-715 13-70 (75)
471 2dpy_A FLII, flagellum-specifi 82.1 0.57 2E-05 50.6 2.6 24 371-394 159-182 (438)
472 3cmu_A Protein RECA, recombina 81.9 0.61 2.1E-05 59.2 3.0 23 371-393 1429-1451(2050)
473 2rcn_A Probable GTPase ENGC; Y 81.8 0.96 3.3E-05 47.2 4.1 23 371-393 217-239 (358)
474 1tf7_A KAIC; homohexamer, hexa 81.7 0.65 2.2E-05 51.5 2.9 23 371-393 283-305 (525)
475 1sky_E F1-ATPase, F1-ATP synth 81.7 0.87 3E-05 49.2 3.8 22 371-392 153-174 (473)
476 3iby_A Ferrous iron transport 81.6 0.56 1.9E-05 46.7 2.1 22 371-392 3-24 (256)
477 2yv5_A YJEQ protein; hydrolase 81.6 0.89 3E-05 46.4 3.7 23 371-394 167-189 (302)
478 4djt_A GTP-binding nuclear pro 81.6 0.31 1E-05 46.8 0.2 22 369-390 11-32 (218)
479 4edh_A DTMP kinase, thymidylat 81.5 0.6 2.1E-05 45.0 2.2 24 371-394 8-31 (213)
480 1h65_A Chloroplast outer envel 81.5 0.58 2E-05 46.8 2.2 23 369-391 39-61 (270)
481 2q6t_A DNAB replication FORK h 81.5 0.66 2.2E-05 50.3 2.8 23 371-393 202-224 (444)
482 2www_A Methylmalonic aciduria 81.4 0.76 2.6E-05 48.0 3.2 23 371-393 76-98 (349)
483 4a1f_A DNAB helicase, replicat 81.0 0.74 2.5E-05 47.7 2.8 26 367-393 45-70 (338)
484 1u0l_A Probable GTPase ENGC; p 80.9 0.56 1.9E-05 47.9 1.9 24 371-394 171-194 (301)
485 3qks_A DNA double-strand break 80.9 0.66 2.3E-05 44.3 2.3 22 372-393 26-47 (203)
486 2qag_A Septin-2, protein NEDD5 80.9 0.64 2.2E-05 48.8 2.4 21 371-391 39-59 (361)
487 2heo_A Z-DNA binding protein 1 80.8 1.9 6.5E-05 32.9 4.5 37 671-710 25-61 (67)
488 3p32_A Probable GTPase RV1496/ 80.5 2 6.9E-05 44.8 6.1 23 371-393 81-103 (355)
489 3gj0_A GTP-binding nuclear pro 80.4 0.39 1.3E-05 46.2 0.5 25 368-392 14-39 (221)
490 3b6e_A Interferon-induced heli 80.2 1.2 4E-05 42.4 3.8 21 371-391 50-70 (216)
491 1taf_A TFIID TBP associated fa 80.0 7.1 0.00024 29.8 7.3 49 566-632 17-65 (68)
492 3kl4_A SRP54, signal recogniti 80.0 0.7 2.4E-05 49.6 2.3 30 672-701 396-425 (433)
493 2qtf_A Protein HFLX, GTP-bindi 79.8 0.73 2.5E-05 48.5 2.4 26 367-392 176-202 (364)
494 3b0c_T CENP-T, centromere prot 79.8 6.1 0.00021 33.5 7.7 64 549-632 8-71 (111)
495 1yqt_A RNAse L inhibitor; ATP- 79.7 0.82 2.8E-05 50.8 2.8 24 371-394 49-72 (538)
496 1ega_A Protein (GTP-binding pr 79.6 0.83 2.8E-05 46.6 2.7 22 371-392 10-31 (301)
497 1x6v_B Bifunctional 3'-phospho 79.6 0.91 3.1E-05 51.1 3.2 23 371-393 54-76 (630)
498 3def_A T7I23.11 protein; chlor 79.4 0.75 2.6E-05 45.8 2.2 23 370-392 37-59 (262)
499 1mky_A Probable GTP-binding pr 79.4 0.86 3E-05 49.2 2.9 25 368-392 179-203 (439)
500 1tf7_A KAIC; homohexamer, hexa 79.3 0.83 2.8E-05 50.7 2.8 32 371-402 41-77 (525)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.5e-94 Score=821.11 Aligned_cols=584 Identities=36% Similarity=0.571 Sum_probs=527.6
Q ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHcCCcEEEEehhhhhcccCCCHHHHHHHHHhHHHHHHHHHHHHHhhCCCCC
Q 005024 9 DKAFAKEFISNFADANGDAKYANILQDVANRKIRSIQIDLEDLFNYKDFDEEFFRRVTENTRRYIGIFASAIDELLPEPT 88 (718)
Q Consensus 9 ~~~~~~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~f~~~d~~La~~i~~np~~~~~~~~~a~~~~~~~~~ 88 (718)
.+++|++||++|++.++.++|+++|++|++.++.+|.||++||.+| |++|+..|+++|.+++++|+.|+++++.+..
T Consensus 4 ~~~~f~~Fl~~~~~~~~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~---~~~l~~~l~~~p~~~~~~~~~a~~~~~~~~~ 80 (595)
T 3f9v_A 4 YRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSF---NENLAYEIINNTKIILPILEGALYDHILQLD 80 (595)
T ss_dssp HHHHHHHHHHHCCTTTTSCTTHHHHHHHHHHTCSSCCEEHHHHHTT---CTTHHHHHHTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhccCCChhHHHHHHHHHHcCCcEEEEEhHHHhhh---CHHHHHHHHHCHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999988999999999999999999999999999999 8999999999999999999999999865321
Q ss_pred CCCCCchhhHHhhhccccCCCCCCCCCCCCCCCcccceEEEEEEeeCCCCccccccccCcCCCCcEEEEEeEEEEeecce
Q 005024 89 EAFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEIKRYYEVYIRASSKGRPFSIREVKASYIGQLVRISGIITRCSDVK 168 (718)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~G~V~~~s~v~ 168 (718)
.. + .. ..++++|+|.++|. ...+|+|++.++|+||+|+|+|+++|.|+
T Consensus 81 ~~-------~----------------------~~-~~~~~~v~~~~~~~--~~~~r~l~~~~i~~lv~v~G~V~r~s~v~ 128 (595)
T 3f9v_A 81 PT-------Y----------------------QR-DIEKVHVRIVGIPR--VIELRKIRSTDIGKLITIDGILVKVTPVK 128 (595)
T ss_dssp GG-------G----------------------TT-TCCCCCCCEECCSC--EECGGGCCGGGTTCCEEEEEEEEEECCCE
T ss_pred hh-------h----------------------hh-ccceEEEEEeCCCC--CCChhhcchhhCCcEEEEEEEEEEecCEE
Confidence 10 0 00 12247888988874 58999999999999999999999999999
Q ss_pred eeeeeeeeecCC--CCceEEEee---cceeecCCCCCCCccccCCCCCCceEeeeccceeccceeeeeeeccccCCCCCC
Q 005024 169 PLMQVAVYTCEE--CGFEIYQEV---TARVFMPLFECPSQRCKINKTKGNLVLQLRASKFLKFQEAKIQELAEHVPKGHI 243 (718)
Q Consensus 169 p~~~~~~~~C~~--C~~~~~~~~---~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~ 243 (718)
|++..++|.|.+ |++.+.... .+..+++|..||+ |++ .|+|.+.++.|+|+|||+|+|||.|+.+|.|++
T Consensus 129 ~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~--C~~---~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~ 203 (595)
T 3f9v_A 129 ERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPK--CGK---PGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQL 203 (595)
T ss_dssp EEEEECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTT--TCC---CSEEECCSTTCEEEEEEEEEEECCTTTSCTTSC
T ss_pred EEEEEEEEEecCCCCCCEEEEEeccccCCcccCCCcCCC--CCC---CCceEEeccCceeeeeEEEEEEeccccCCCCCC
Confidence 999999999999 998887653 3457888999984 864 458999999999999999999999999999999
Q ss_pred CceEEEEeccccccccCCCCEEEEEEEEeeccCCCccccccccccceeeeeEEEEeeccccccccCChHHHHHHHHHhhC
Q 005024 244 PRTMTVHLRGELTRKVAPGDVVEFSGIFLPIPYTGFRALRAGLVADTYLEAMSVTHFKKKYEEYELRGDEEEHISRLAED 323 (718)
Q Consensus 244 P~~i~v~l~~dlv~~~~pGd~V~v~GI~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~ 323 (718)
||+++|+|++|||+.|+|||+|.|+||+++.+..+.+. ....++++|+++++|+.........++++++.+.+.+++++
T Consensus 204 pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~-~~~~~~~~~i~a~~i~~~~~~~~~~~~t~~~~~~i~~~~~~ 282 (595)
T 3f9v_A 204 PRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKR-GSRAVFDIYMKVSSIEVSQKVLDEVIISEEDEKKIKDLAKD 282 (595)
T ss_dssp CCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSC-TTCCCCCCCCEEEEEEECCCCCCCCCCTTSTHHHHHTTSST
T ss_pred CceEEEEEecccccccccCCEEEEEEEEEecccccccC-CCcceEEEEEEEEeecccccccccCCCCHHHHHHHHHHhhC
Confidence 99999999999999999999999999999987654322 22457999999999998887777778999999999999999
Q ss_pred hhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCC
Q 005024 324 GDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRG 403 (718)
Q Consensus 324 ~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~ 403 (718)
++.++.+.++++|.|+|++.+|++++++|++|..+..++ .+.|+++||||+||||||||++|+++++.+++..++.+..
T Consensus 283 ~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~ 361 (595)
T 3f9v_A 283 PWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKG 361 (595)
T ss_dssp TTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTC
T ss_pred cHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCc
Confidence 999999999999999999999999999999998777777 8899999999999999999999999999999999998887
Q ss_pred CCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEe
Q 005024 404 SSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAA 483 (718)
Q Consensus 404 ~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~ 483 (718)
.+..++++...++..+|.+..++|++.+|++|+||||||++|+++.|++|+++||++++++.++|....++.+++||||+
T Consensus 362 ~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaat 441 (595)
T 3f9v_A 362 STAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAG 441 (595)
T ss_dssp STTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEE
T ss_pred cccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEc
Confidence 88889999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 005024 484 NPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR 563 (718)
Q Consensus 484 Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 563 (718)
||..|+|+...++.+|+.++++|+||||+++++.+.|+.+ +..|++|++..|... ...+.++.+++++|+.+++.
T Consensus 442 Np~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~----~~~~~l~~~~l~~~i~~ar~ 516 (595)
T 3f9v_A 442 NPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGK----STKNIIDIDTLRKYIAYARK 516 (595)
T ss_dssp CCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCC----SSSSTTCCTTTHHHHHHHHH
T ss_pred CCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc----ccccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999887542 22355888999999999997
Q ss_pred -cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccc
Q 005024 564 -LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFS 639 (718)
Q Consensus 564 -~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~ 639 (718)
+.|.+++++.+.|.++|..+|+.........+++|+|++++++|+|+|+|++++++.|+.+||.+|++++..+...
T Consensus 517 ~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~sl~~ 593 (595)
T 3f9v_A 517 YVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFLES 593 (595)
T ss_dssp HHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999998754333346999999999999999999999999999999999999999887653
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=1.7e-69 Score=577.90 Aligned_cols=374 Identities=30% Similarity=0.377 Sum_probs=330.1
Q ss_pred ccceeccceeeeeeeccccCCCCCCCceEEEEecccccc------ccCCCCEEEEEEEEeeccCCCccccccccccceee
Q 005024 219 RASKFLKFQEAKIQELAEHVPKGHIPRTMTVHLRGELTR------KVAPGDVVEFSGIFLPIPYTGFRALRAGLVADTYL 292 (718)
Q Consensus 219 ~~s~~~d~Q~i~iQe~~~~~~~g~~P~~i~v~l~~dlv~------~~~pGd~V~v~GI~~~~~~~~~~~~~~~~~~~~~l 292 (718)
+++.|.|||+|+|||.|+++|.|++||+++|+|++|||| +|+|||+|.|+||++.. |+
T Consensus 109 ~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~----------------~l 172 (506)
T 3f8t_A 109 ERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA----------------TL 172 (506)
T ss_dssp SCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT----------------EE
T ss_pred hhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe----------------EE
Confidence 455679999999999999999999999999999999999 99999999999999742 99
Q ss_pred eeEEEEeeccccccccCChHHHHHHHHHhhChhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCcccccccee
Q 005024 293 EAMSVTHFKKKYEEYELRGDEEEHISRLAEDGDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHI 372 (718)
Q Consensus 293 ~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~v 372 (718)
+|+||+. ++.+....+|+++.+.|++++++ ++|+.+.++|+| |+|++.+|+||+++|+||+.+ .||++||
T Consensus 173 ~a~~i~~-~~~~~~~~~t~ed~~~i~~l~~~-~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-------~rgdihV 242 (506)
T 3f8t_A 173 DALEVHK-KDPIPEVHPDPAELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK-------NSERLHV 242 (506)
T ss_dssp EEEEEEE-ECSSCCCCCCHHHHHHHHHHHHS-CHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-------GGGCCCE
T ss_pred EEEEEEE-cCccccCCCCHHHHHHHHHHHHH-HHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-------cCCceeE
Confidence 9999998 45556778999999999999999 999999999999 999999999999999999754 8999999
Q ss_pred eecCCCcchHHHHHHHH-HHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHH
Q 005024 373 CLMGDPGVAKSQLLKHI-INVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRT 451 (718)
Q Consensus 373 Ll~G~pGtGKt~la~~i-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~ 451 (718)
||+|+||| ||++|+++ ++.+|+.+|++|.+++..+++++ .+++ +| |.+++|++++|++|+||||||++|+++.|+
T Consensus 243 LL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qs 318 (506)
T 3f8t_A 243 LLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEPHRW 318 (506)
T ss_dssp EEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHH
T ss_pred EEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHH
Confidence 99999999 99999999 99999999999988877889998 7887 88 999999999999999999999999999999
Q ss_pred HHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhh
Q 005024 452 AIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARH 531 (718)
Q Consensus 452 ~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~ 531 (718)
+|+++||+|++++. |. ++|++|+||||+||.+ +|+..+++ +|+.|+++++|||||++++.|+|+.+.|.+
T Consensus 319 aLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e---- 388 (506)
T 3f8t_A 319 ALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQDFLSHFDLIAFLGVDPRPGEPEE---- 388 (506)
T ss_dssp HHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---CCSCGG-GGCCSCHHHHTTCSEEEETTC-------------
T ss_pred HHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCccc-ccCCCCCc-cccCCChHHhhheeeEEEecCCCChhHhhc----
Confidence 99999999999997 77 9999999999999998 89988888 999999999999999999999999988742
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-h-cCCCCCHHHHHHHHHHHHHhhHhhhh---cCCCCcccCHHHHHHHH
Q 005024 532 VVYVHQNKESPALGFTPLEPAILRAYISAAR-R-LSPCVPRELEEYIAAAYSNIRQEEAK---SNTPHSYTTVRTLLSIL 606 (718)
Q Consensus 532 il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~-~~p~ls~~~~~~l~~~y~~lr~~~~~---~~~~~~~~s~R~l~~li 606 (718)
...+.++.++|++|+.+++ . +.|.+++++.++|.++|..+|..... .....++.|+|++++|+
T Consensus 389 ------------~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLi 456 (506)
T 3f8t_A 389 ------------QDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVE 456 (506)
T ss_dssp -----------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHH
T ss_pred ------------ccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHH
Confidence 1124589999999999999 3 58999999999999999999984211 12346899999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccc
Q 005024 607 RISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDD 644 (718)
Q Consensus 607 rla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~ 644 (718)
|+|+|+|++++++.|+++||.+|+++++.+......++
T Consensus 457 RlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~a~dp 494 (506)
T 3f8t_A 457 RLAKAHARMRLSDDVEPEDVDIAAELVDWYLETAMQIP 494 (506)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999977665443
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=100.00 E-value=1e-50 Score=418.18 Aligned_cols=269 Identities=24% Similarity=0.409 Sum_probs=211.6
Q ss_pred cCHHHHHHHHHHHHHhcccCCCcchHHHHHHHHH--HcCCcEEEEehhhhhcccCCCHHHHHHHHHhHHHHHHHHHHHHH
Q 005024 4 FDLDADKAFAKEFISNFADANGDAKYANILQDVA--NRKIRSIQIDLEDLFNYKDFDEEFFRRVTENTRRYIGIFASAID 81 (718)
Q Consensus 4 ~~~~~~~~~~~~Fl~~f~~~~~~~~Y~~~i~~~~--~~~~~~l~Id~~dL~~f~~~d~~La~~i~~np~~~~~~~~~a~~ 81 (718)
....+.+++|++||++| +|+++|++|+ ..+..+|.||++||.+| |++||..|.++|.+++++|+.|++
T Consensus 9 ~~~~~~~~~f~~Fl~~~-------~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~---~~~La~~l~~~P~~~l~~~~~a~~ 78 (279)
T 1ltl_A 9 VDKSKTLTKFEEFFSLQ-------DYKDRVFEAIEKYPNVRSIEVDYLDLEMF---DPDLADLLIEKPDDVIRAAQQAIR 78 (279)
T ss_dssp CCHHHHHHHHHHHTTSH-------HHHHHHHHHHHHTTSCCEEEEEHHHHHHH---CTTHHHHHHHSHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHhccc-------hHHHHHHHHHhhCCCCeEEEEEhHHHhhh---CHHHHHHHHHCHHHHHHHHHHHHH
Confidence 34677889999999887 8999999999 77899999999999999 999999999999999999999998
Q ss_pred hhCCCCCCCCCCchhhHHhhhccccCCCCCCCCCCCCCCCcccceEEEEEEeeCCCCccccccccCcCCCCcEEEEEeEE
Q 005024 82 ELLPEPTEAFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEIKRYYEVYIRASSKGRPFSIREVKASYIGQLVRISGII 161 (718)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~G~V 161 (718)
++.+ . . ..+ +++|+|.++|. ..++|+|++.++||||+|+|+|
T Consensus 79 ~~~~--~---~-----------------------------~~~--~~~vr~~~~~~--~~~iR~L~~~~igkLV~v~GiV 120 (279)
T 1ltl_A 79 NIDR--L---R-----------------------------KNV--DLNIRFSGISN--VIPLRELRSKFIGKFVAVDGIV 120 (279)
T ss_dssp TTCT--T---C-----------------------------CCC--CCEEEEECCSC--BCCGGGCCGGGTTSEEEEEEEE
T ss_pred Hhcc--c---c-----------------------------CCe--eEEEEEECCCC--CCCcccCChhhCCCEEEEEEEE
Confidence 8742 1 0 011 47899998874 5899999999999999999999
Q ss_pred EEeecceeeeeeeeeecCCCCceEEEeecceeecCCCCCCCccccCCCCCCceEeeeccceeccceeeeeeeccccCCCC
Q 005024 162 TRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLFECPSQRCKINKTKGNLVLQLRASKFLKFQEAKIQELAEHVPKG 241 (718)
Q Consensus 162 ~~~s~v~p~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g 241 (718)
+|+|.|+|+++.++|+|.+||+.+++.+....+++|..||+ |++. | |.++++.|+|+|||+|+|||.|+.+|.|
T Consensus 121 ~r~S~V~p~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~--C~~~---~-f~l~~~~s~f~D~Q~ikiQE~pe~vp~G 194 (279)
T 1ltl_A 121 RKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSE--CGGR---S-FRLLQDESEFLDTQTLKLQEPLENLSGG 194 (279)
T ss_dssp EEECCCEEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTT--TCCC---C-EEECGGGCEEEEEEEEEEECCSTTCCSS
T ss_pred EEecceEEEEEEEEEEcCCCCCEEEEEecCCcccCCCcCCC--CCCC---C-cEEeccccEEEeeEEEEEecCcccCCCC
Confidence 99999999999999999999999888877677899999985 9753 4 9999999999999999999999999999
Q ss_pred CCCceEEEEeccccccccCCCCEEEEEEEEeeccCCCccccccccccceeeeeEEEEeeccccccccCChHHHHHHHHHh
Q 005024 242 HIPRTMTVHLRGELTRKVAPGDVVEFSGIFLPIPYTGFRALRAGLVADTYLEAMSVTHFKKKYEEYELRGDEEEHISRLA 321 (718)
Q Consensus 242 ~~P~~i~v~l~~dlv~~~~pGd~V~v~GI~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ 321 (718)
++||+++|+|++||||+|+|||+|.|+||+++.+.. ...++++|++|+||+..++.+....+|+++.++|.+++
T Consensus 195 ~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~~~------~~~~~~~~l~a~~I~~~~~~~~~~~~t~ed~~~i~~ls 268 (279)
T 1ltl_A 195 EQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDE------RTKRFKNFIYGNYTEFLEQEFEELQISEEDEEKIKELA 268 (279)
T ss_dssp CCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEEET------TTTEEEEEEEEEECCBC---------------------
T ss_pred CCCeEEEEEEcccccCccCCCCEEEEEEEEEEeeCC------CCceEEEEEEEEEEEEecCccccCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999987621 23468999999999988877777889999999999999
Q ss_pred hChhHHHHHHh
Q 005024 322 EDGDIYNKLAR 332 (718)
Q Consensus 322 ~~~~~~~~l~~ 332 (718)
++|++|++|++
T Consensus 269 ~~~~iy~~L~~ 279 (279)
T 1ltl_A 269 GDPNIYEKIIR 279 (279)
T ss_dssp -----------
T ss_pred cCCCHHHHhhC
Confidence 99999998763
No 4
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.8e-48 Score=398.68 Aligned_cols=254 Identities=24% Similarity=0.419 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHhcccCCCcchHHHHHHHHHHcCCcEEEEehhhhhcccCCCHHHHHHHHHhHHHHHHHHHHHHHhhCCCC
Q 005024 8 ADKAFAKEFISNFADANGDAKYANILQDVANRKIRSIQIDLEDLFNYKDFDEEFFRRVTENTRRYIGIFASAIDELLPEP 87 (718)
Q Consensus 8 ~~~~~~~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~f~~~d~~La~~i~~np~~~~~~~~~a~~~~~~~~ 87 (718)
+..++|++||.+|.+.+++++|+++|++|++.+..+|.||++||.+| |++||..|+++|.+++++|+.|+++++...
T Consensus 9 ~~~~~f~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~---~~~La~~l~~~P~~~l~~~~~a~~~~~~~~ 85 (268)
T 2vl6_A 9 DYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSF---NENLAYEIINNTKIILPILEGALYDHILQL 85 (268)
T ss_dssp CHHHHHHHHHHHCCCSSSSCTTHHHHHHHHHTTCCCEEEEHHHHHHH---CHHHHHHHHHHTTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcccCchHHHHHHHHHHHcCCcEEEEEHHHHHhh---hHHHHHHHHHCHHHHHHHHHHHHHHHHHHh
Confidence 44688999999998878889999999999999999999999999999 999999999999999999999999987643
Q ss_pred CCCCCCchhhHHhhhccccCCCCCCCCCCCCCCCcccceEEEEEEeeCCCCccccccccCcCCCCcEEEEEeEEEEeecc
Q 005024 88 TEAFPDDDHDILMTQRSEDGADNTDGADPRQKMPPEIKRYYEVYIRASSKGRPFSIREVKASYIGQLVRISGIITRCSDV 167 (718)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~v~i~~~~~~~~~~~r~l~~~~igklv~i~G~V~~~s~v 167 (718)
...+. ...+.++|+|.+++. ...+|+|+++++||||+|+|+|+|+|.|
T Consensus 86 ~~~~~------------------------------~~~~~~~vr~~~~~~--~~~iR~l~~~~igkLV~v~GiV~r~S~V 133 (268)
T 2vl6_A 86 DPTYQ------------------------------RDIEKVHVRIVGIPR--VIELRKIRSTDIGKLITIDGILVKVTPV 133 (268)
T ss_dssp CGGGT------------------------------TTCSCCCEEEECCSC--EECGGGCCGGGTTSEEEEEEEEEEECCC
T ss_pred Cchhh------------------------------ccCccEEEEEECCCC--CCccccCChhHCCCeEEEEEEEEEcCCc
Confidence 22100 012357899998874 5899999999999999999999999999
Q ss_pred eeeeeeeeeec--CCCCceEEEe---ecceeecCCCCCCCccccCCCCCCceEeeeccceeccceeeeeeeccccCCCCC
Q 005024 168 KPLMQVAVYTC--EECGFEIYQE---VTARVFMPLFECPSQRCKINKTKGNLVLQLRASKFLKFQEAKIQELAEHVPKGH 242 (718)
Q Consensus 168 ~p~~~~~~~~C--~~C~~~~~~~---~~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~ 242 (718)
+|++..++|+| .+||+.+... +..+.+++|..|| .|++ .|+|.++++.|+|+|||+|+|||.|+.+|.|+
T Consensus 134 ~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp--~C~~---~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~ 208 (268)
T 2vl6_A 134 KERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICP--KCGK---PGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQ 208 (268)
T ss_dssp EEEEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCT--TTCC---BCEEEECGGGCEEEEEEEEEEECCGGGSCTTS
T ss_pred ceEeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCC--CCCC---CCCEEEecCccEEEeeEEEEEEeCCCCCCCCC
Confidence 99999999999 9999998777 5566788999998 5974 45799999999999999999999999999999
Q ss_pred CCceEEEEeccccccccCCCCEEEEEEEEeeccCCCccccccccccceeeeeEEEEeecc
Q 005024 243 IPRTMTVHLRGELTRKVAPGDVVEFSGIFLPIPYTGFRALRAGLVADTYLEAMSVTHFKK 302 (718)
Q Consensus 243 ~P~~i~v~l~~dlv~~~~pGd~V~v~GI~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~ 302 (718)
+||+++|+|++||||+|+|||+|.|+||+++.+..+.++ ....++++||+|+||+..++
T Consensus 209 ~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~~~-~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 209 LPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKR-GSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp CCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECSSTTCC-SSCCEEEEEEEEEEEEEC--
T ss_pred CCcEEEEEEccCccCcccCCCEEEEEEEEEEeecccccC-CCceEEEEEEEEEEEEEecc
Confidence 999999999999999999999999999999988654322 33457999999999987643
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.95 E-value=1.9e-25 Score=237.99 Aligned_cols=278 Identities=18% Similarity=0.219 Sum_probs=214.7
Q ss_pred hHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee--cCC
Q 005024 325 DIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT--TGR 402 (718)
Q Consensus 325 ~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~--~~~ 402 (718)
+.++.+..++.+.++|++.++.+++.++.++. |+||+||||||||++|+++++.++..++. +..
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--------------~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~ 81 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--------------HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTP 81 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--------------CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--------------eEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCC
Confidence 57788999999999999999999998888764 89999999999999999999998776543 222
Q ss_pred CCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEE
Q 005024 403 GSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSA 482 (718)
Q Consensus 403 ~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa 482 (718)
.....++.+........|.+.+.+|.+ .++++||||++.+++..++.|+++|+++.+++. |.....+.++.++||
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~--g~~~~~~~~~~viat 156 (331)
T 2r44_A 82 DLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTIG--DTTYPLDNPFLVLAT 156 (331)
T ss_dssp TCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET--TEEEECCSSCEEEEE
T ss_pred CCChhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceeeC--CEEEECCCCEEEEEe
Confidence 222223444444444456666666655 268999999999999999999999999998885 888899999999999
Q ss_pred eCCCC--CCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH
Q 005024 483 ANPAW--GRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA 560 (718)
Q Consensus 483 ~Np~~--g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~ 560 (718)
+||.. |.| .++++|++||++.+.+ ++|+.+...+|..+...... .......++.+.+......
T Consensus 157 ~np~~~~~~~----------~l~~~l~~Rf~~~i~i-~~p~~~~~~~il~~~~~~~~----~~~~~~~~~~~~i~~~~~~ 221 (331)
T 2r44_A 157 QNPVEQEGTY----------PLPEAQVDRFMMKIHL-TYLDKESELEVMRRVSNMNF----NYQVQKIVSKNDVLEIRNE 221 (331)
T ss_dssp ECTTCCSCCC----------CCCHHHHTTSSEEEEC-CCCCHHHHHHHHHHHHCTTC----CCCCCCCSCHHHHHHHHHH
T ss_pred cCCCcccCcc----------cCCHHHHhheeEEEEc-CCCCHHHHHHHHHhccccCc----chhccccCCHHHHHHHHHH
Confidence 99885 555 7999999999875554 78888887777766554221 1111233667777666554
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhhHhhhhc-----CCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 561 ARRLSPCVPRELEEYIAAAYSNIRQEEAKS-----NTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 561 ~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~-----~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
... ..+++++.+++.+++..+|...... ....++.|+|.+.++++.|.++|.+++++.|+++||.+|+..+..
T Consensus 222 ~~~--v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 222 INK--VTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILN 299 (331)
T ss_dssp HHT--CBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHT
T ss_pred hcc--CCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhH
Confidence 433 3789999999999998888653100 002356799999999999999999999999999999999998876
Q ss_pred hcc
Q 005024 636 SKF 638 (718)
Q Consensus 636 ~~~ 638 (718)
++.
T Consensus 300 ~r~ 302 (331)
T 2r44_A 300 HRI 302 (331)
T ss_dssp TTS
T ss_pred hhc
Confidence 654
No 6
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.92 E-value=1.4e-23 Score=232.50 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=185.2
Q ss_pred hHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---eeecC
Q 005024 325 DIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---VYTTG 401 (718)
Q Consensus 325 ~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~~~~~ 401 (718)
+.++.+.+++.+.|+|++.++++++.++.+|. ||||+||||||||++|++++..++.. .+...
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~--------------~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~ 76 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSGE--------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT 76 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC--------------EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC--------------eeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45678889999999999999999999888775 99999999999999999999988542 11111
Q ss_pred CCCCCCcceeeEeecc--ccccee-eecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 402 RGSSGVGLTAAVQRDN--VTNEMV-LEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 402 ~~~~~~~l~~~~~~~~--~~g~~~-~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
...+...+++...... ..|.+. ...|. ++..+|+|||||++++++.++.|+++|+++.+++. |....++.++
T Consensus 77 ~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~--G~~~~~~~~~- 151 (500)
T 3nbx_X 77 RFSTPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNG--AHVEKIPMRL- 151 (500)
T ss_dssp TTCCHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECS--SSEEECCCCE-
T ss_pred hcCCHHHhcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCC--CCcCCcchhh-
Confidence 1112222222111000 012221 22232 22456899999999999999999999999999884 8888888886
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhH-HHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDS-DLEMARHVVYVHQNKESPALGFTPLEPAILRAY 557 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~-d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 557 (718)
+|+|||+.... ..+.+++++||++. +..++|+... ...|........ ..+....+.++.+.+..+
T Consensus 152 iI~ATN~lpe~----------~~~~~aLldRF~~~-i~v~~p~~~ee~~~IL~~~~~~~---~~~~~~~~~~~~e~l~~~ 217 (500)
T 3nbx_X 152 LVAASNELPEA----------DSSLEALYDRMLIR-LWLDKVQDKANFRSMLTSQQDEN---DNPVPDALQVTDEEYERW 217 (500)
T ss_dssp EEEEESSCCCT----------TCTTHHHHTTCCEE-EECCSCCCHHHHHHHHTCCCCTT---SCCSCTTTSBCHHHHHHH
T ss_pred hhhccccCCCc----------cccHHHHHHHHHHH-HHHHHhhhhhhHHHHHhcccccC---CCCCCccceecHHHHHHH
Confidence 67777864221 14568999999554 4457787643 445544322111 111112344788888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 005024 558 ISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD 627 (718)
Q Consensus 558 i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 627 (718)
...+... .+++++.+++.+.+..+|... ...++|+|.+++++++|+|+|.+++++.|+++||.
T Consensus 218 ~~~~~~v--~v~d~v~e~i~~l~~~lr~~r-----~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 218 QKEIGEI--TLPDHVFELIFMLRQQLDKLP-----DAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHTTC--BCCHHHHHHHHHHHHHHHHCS-----SSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HhcCCcc--cCchHHHHHHHHHHHHhhcCC-----CCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 7766554 689999999998887666532 23467999999999999999999999999999998
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.91 E-value=2e-23 Score=223.87 Aligned_cols=268 Identities=24% Similarity=0.284 Sum_probs=192.3
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCC---------
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSG--------- 406 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~--------- 406 (718)
.+++|++.++.++..+++.+... |+||+||||||||++|+++++.+++..+..+.....
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~------------~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIG------------GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDW 91 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGC------------CEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTT
T ss_pred hhccChHHHHHHHHHHhhCCCCc------------eEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccch
Confidence 36899999999887777654211 799999999999999999999997643322110000
Q ss_pred ------------------------CcceeeEe-ecc-cccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhccc
Q 005024 407 ------------------------VGLTAAVQ-RDN-VTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQ 460 (718)
Q Consensus 407 ------------------------~~l~~~~~-~~~-~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~ 460 (718)
.++.+... ... ..+.+.+.+|.+..+++|++||||++.++++.+..|+++|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~ 171 (350)
T 1g8p_A 92 ATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSG 171 (350)
T ss_dssp CCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred hhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 00111000 000 0123456677777888999999999999999999999999999
Q ss_pred EEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCC
Q 005024 461 TVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKE 540 (718)
Q Consensus 461 ~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~ 540 (718)
...+.+.|.....+.++.+|+|+||..+ .++++|++||++.+.+...++.+.+..|..+.+.......
T Consensus 172 ~~~~~~~g~~~~~~~~~~li~~~n~~~~------------~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~ 239 (350)
T 1g8p_A 172 ENVVERDGLSIRHPARFVLVGSGNPEEG------------DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPK 239 (350)
T ss_dssp EEEECCTTCCEEEECCEEEEEEECSCSC------------CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHH
T ss_pred ceEEEecceEEeeCCceEEEEEeCCCCC------------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCch
Confidence 9888888999999999999999998653 6889999999987776454466666677766543221000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCC
Q 005024 541 SPALGFTPLEPAILRAYISAARR--LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFS 618 (718)
Q Consensus 541 ~~~~~~~~~~~~~l~~~i~~~~~--~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~ 618 (718)
. ...........+++++.+++. ....+++++.++|.+++...+ ..++|.+.++++.|.++|.++++
T Consensus 240 ~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~-----------~~~~R~~~~ll~~a~~~A~~~~~ 307 (350)
T 1g8p_A 240 A-FLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG-----------SDGLRGELTLLRSARALAALEGA 307 (350)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS-----------SCSHHHHHHHHHHHHHHHHHTTC
T ss_pred h-hccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC-----------CCCccHHHHHHHHHHHHHHHcCC
Confidence 0 000001234456667766654 233799999999999863211 12789999999999999999999
Q ss_pred CCccHHHHHHHHHHHhhhccc
Q 005024 619 ETVAQSDVDEALRLMQMSKFS 639 (718)
Q Consensus 619 ~~V~~~dv~~ai~l~~~~~~~ 639 (718)
+.|+.+|+.+|+.++..++..
T Consensus 308 ~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 308 TAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp SBCCHHHHHHHHHHHHGGGCC
T ss_pred CcCCHHHHHHHHHHHHhhccc
Confidence 999999999999998887654
No 8
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.88 E-value=2e-21 Score=207.32 Aligned_cols=284 Identities=20% Similarity=0.215 Sum_probs=194.0
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
.+++|++.++..+...+....... ....++||+||||||||++|+++++.+...++....... .
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~---------~ 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRN-------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI---------E 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTT-------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC---------C
T ss_pred HHhCChHHHHHHHHHHHHHHHhcC-------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc---------c
Confidence 479999999988876665421100 111289999999999999999999998655433111000 0
Q ss_pred cccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCC------eEEEecCceEEEEEeCCCCCC
Q 005024 416 DNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAG------ITTSLNARTAVLSAANPAWGR 489 (718)
Q Consensus 416 ~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g------~~~~l~~~~~viaa~Np~~g~ 489 (718)
..+ .+.......+++|++||||++.++++.+..|+++|+++.+.+..++ ....++ ++.+|+|+|...
T Consensus 93 --~~~--~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~-- 165 (338)
T 3pfi_A 93 --KSG--DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAG-- 165 (338)
T ss_dssp --SHH--HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGG--
T ss_pred --chh--HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCcc--
Confidence 001 0111111246789999999999999999999999999876654211 112223 689999999864
Q ss_pred CCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCC
Q 005024 490 YDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCV 568 (718)
Q Consensus 490 ~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~l 568 (718)
.++++|++||+..+.+ ++++.+++..++.... .....+
T Consensus 166 -----------~l~~~L~~R~~~~i~l------------------------------~~~~~~e~~~il~~~~~~~~~~~ 204 (338)
T 3pfi_A 166 -----------MLSNPLRDRFGMQFRL------------------------------EFYKDSELALILQKAALKLNKTC 204 (338)
T ss_dssp -----------GSCHHHHTTCSEEEEC------------------------------CCCCHHHHHHHHHHHHHHTTCEE
T ss_pred -----------ccCHHHHhhcCEEeeC------------------------------CCcCHHHHHHHHHHHHHhcCCCC
Confidence 6899999999877653 3344455555554433 344468
Q ss_pred CHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccC
Q 005024 569 PRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRS 648 (718)
Q Consensus 569 s~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~ 648 (718)
++++.+.+.. .|++++|++.++++.+...|.+.....|+.+++..++........
T Consensus 205 ~~~~~~~l~~---------------~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~---------- 259 (338)
T 3pfi_A 205 EEKAALEIAK---------------RSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNEL---------- 259 (338)
T ss_dssp CHHHHHHHHH---------------TTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCTT----------
T ss_pred CHHHHHHHHH---------------HHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCccc----------
Confidence 9999888877 389999999999999988898888889999999998876432111
Q ss_pred ccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHH-HHHhcCeEEEeCCeeEEE
Q 005024 649 GLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLE-EYAALNVWQIHPHTFDIR 714 (718)
Q Consensus 649 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g~i~~~~~~~~i~ 714 (718)
..+.. -...+..+... ++..++.. +.|+.+|+++.++++.++ .|.+.|++...+.|+.++
T Consensus 260 ~l~~~--e~~~l~~l~~~-~~~~~~~~---~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t 320 (338)
T 3pfi_A 260 GFDAM--DLRYLELLTAA-KQKPIGLA---SIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIAS 320 (338)
T ss_dssp CCCHH--HHHHHHHHHHS-CSCCBCHH---HHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEEC
T ss_pred CCCHH--HHHHHHHHHHh-cCCCchHH---HHHHHhCCCHHHHHHHHhHHHHHcCceecCCCccccc
Confidence 11111 12334444444 44445544 457788999999999999 888999999999887654
No 9
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.87 E-value=5.1e-22 Score=208.10 Aligned_cols=268 Identities=12% Similarity=0.163 Sum_probs=170.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc-----eeecCCCCCC---CcceeeEeecccccceeeecceEeeecCCeeeeccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG-----VYTTGRGSSG---VGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEF 442 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~-----~~~~~~~~~~---~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi 442 (718)
+|||+|+||||||++|++++..+++. ...++..+.. ..+.+. .+..++|......|.+..|++|++|||||
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~-~~g~~tg~~~~~~g~~~~a~~g~L~LDEi 105 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGH-EKGAFTGADKRREGRFVEADGGTLFLDEI 105 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCC-CSSCCC---CCCCCHHHHHTTSEEEEESC
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCc-cccccCchhhhhcCHHHhcCCCEEEEecc
Confidence 89999999999999999999988643 1223322110 011111 12233454445677888899999999999
Q ss_pred ccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCCh
Q 005024 443 DKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADM 522 (718)
Q Consensus 443 ~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~ 522 (718)
+.|+.+.|..|+++|+++.+.. .|.....+.++++|+|+|+.... ....-.+.++|++||+.+.+-.++...
T Consensus 106 ~~l~~~~q~~Ll~~l~~~~~~~--~g~~~~~~~~~riI~atn~~l~~------~v~~g~fr~~L~~Rl~~~~i~lPpL~e 177 (304)
T 1ojl_A 106 GDISPLMQVRLLRAIQEREVQR--VGSNQTISVDVRLIAATHRDLAE------EVSAGRFRQDLYYRLNVVAIEMPSLRQ 177 (304)
T ss_dssp TTCCHHHHHHHHHHHHSSBCCB--TTBCCCCBCCCEEEEEESSCHHH------HHHHTSSCHHHHHHHSSEEEECCCSGG
T ss_pred ccCCHHHHHHHHHHHhcCEeee--cCCcccccCCeEEEEecCccHHH------HHHhCCcHHHHHhhcCeeEEeccCHHH
Confidence 9999999999999999987643 47777788899999999986100 011115789999999866543222221
Q ss_pred -hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 523 -DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 523 -~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
.+|.. .+...+++++........+.+++++.+.|..| .||+|+|+
T Consensus 178 R~edi~--------------------~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~--------------~wpGnvRe 223 (304)
T 1ojl_A 178 RREDIP--------------------LLADHFLRRFAERNRKVVKGFTPQAMDLLIHY--------------DWPGNIRE 223 (304)
T ss_dssp GGGGHH--------------------HHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC--------------CCSSHHHH
T ss_pred hHhhHH--------------------HHHHHHHHHHHHHhccCccCCCHHHHHHHHcC--------------CCCCCHHH
Confidence 11111 11122233222211112357999999999886 69999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWI 681 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~ 681 (718)
|+++++.+...| ....|+.+|+...+.. ... ................+.|...+..++++ ..++|
T Consensus 224 L~~~l~~~~~~~---~~~~i~~~~l~~~~~~---~~~---~~~~~l~~~~~~~~e~~~i~~~l~~~~gn------~~~aA 288 (304)
T 1ojl_A 224 LENAIERAVVLL---TGEYISERELPLAIAA---TPI---KTEYSGEIQPLVDVEKEVILAALEKTGGN------KTEAA 288 (304)
T ss_dssp HHHHHHHHHHHC---CSSSBCGGGSCGGGC-------------CCSSCCCHHHHHHHHHHHHHHTTTTC------HHHHH
T ss_pred HHHHHHHHHHhC---CCCcccHHhhhhhhcc---CCC---ccCCCcchhhHHHHHHHHHHHHHHHcCCC------HHHHH
Confidence 999999887766 4567998888644311 000 00000000012223345677777776644 57889
Q ss_pred HHcCCCHHHHHHHHH
Q 005024 682 SRKGYSEAQLKECLE 696 (718)
Q Consensus 682 ~~~g~~~~~~~~~l~ 696 (718)
+.+|+++++++++|+
T Consensus 289 ~~Lgi~r~tl~~kl~ 303 (304)
T 1ojl_A 289 RQLGITRKTLLAKLS 303 (304)
T ss_dssp HHHTSCHHHHHHHTC
T ss_pred HHHCcCHHHHHHHHh
Confidence 999999999999874
No 10
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.84 E-value=2.3e-19 Score=190.08 Aligned_cols=285 Identities=21% Similarity=0.200 Sum_probs=190.5
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeec-CCCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTT-GRGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~-~~~~~~~~l~~~~~ 414 (718)
.+++|++.++..+...+....... +...++||+||||||||++|+++++.+...++.. +......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC-------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC-------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh-------
Confidence 468899988877765553210000 0112899999999999999999999876544321 1110000
Q ss_pred ecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCC-----eEEEecCceEEEEEeCCCCCC
Q 005024 415 RDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAG-----ITTSLNARTAVLSAANPAWGR 489 (718)
Q Consensus 415 ~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g-----~~~~l~~~~~viaa~Np~~g~ 489 (718)
....+. +. + .+++++++||||++.++...+..|+.+|+++.+.+.-+. .......++.+|+|+|...
T Consensus 78 -~~l~~~--l~-~--~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~-- 149 (324)
T 1hqc_A 78 -GDLAAI--LA-N--SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-- 149 (324)
T ss_dssp -HHHHHH--HT-T--TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS--
T ss_pred -HHHHHH--HH-H--hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc--
Confidence 000000 00 0 135789999999999999999999999999887664111 1112235789999999875
Q ss_pred CCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCC
Q 005024 490 YDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCV 568 (718)
Q Consensus 490 ~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~l 568 (718)
.++++|++||+.++.+ .+++.+++..++.... .....+
T Consensus 150 -----------~~~~~l~~R~~~~i~l------------------------------~~~~~~e~~~~l~~~~~~~~~~~ 188 (324)
T 1hqc_A 150 -----------LITAPLLSRFGIVEHL------------------------------EYYTPEELAQGVMRDARLLGVRI 188 (324)
T ss_dssp -----------SCSCSTTTTCSCEEEC------------------------------CCCCHHHHHHHHHHHHHTTTCCC
T ss_pred -----------cCCHHHHhcccEEEec------------------------------CCCCHHHHHHHHHHHHHhcCCCC
Confidence 6788999999766543 2333444455544332 234468
Q ss_pred CHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccccccccccC
Q 005024 569 PRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRS 648 (718)
Q Consensus 569 s~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~~~~~~~~~~ 648 (718)
++++.+.|..+ +++++|.+.++++.+...|.......|+.+|+..++..+.... .
T Consensus 189 ~~~~~~~l~~~---------------~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~----------~ 243 (324)
T 1hqc_A 189 TEEAALEIGRR---------------SRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDE----------L 243 (324)
T ss_dssp CHHHHHHHHHH---------------SCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCCT----------T
T ss_pred CHHHHHHHHHH---------------ccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccc----------c
Confidence 99999888875 5789999999999988888777788899999998887542110 0
Q ss_pred ccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHH-HHhcCeEEEeCCeeEE
Q 005024 649 GLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEE-YAALNVWQIHPHTFDI 713 (718)
Q Consensus 649 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~-l~~~g~i~~~~~~~~i 713 (718)
..+. .-...+..++...+++.++ +.+.|..+|+++.++++.+++ +.+.|++..++.|+.+
T Consensus 244 ~l~~--~e~~~i~~~~~~~~g~~~~---~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~ 304 (324)
T 1hqc_A 244 GLEK--RDREILEVLILRFGGGPVG---LATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVP 304 (324)
T ss_dssp CCCH--HHHHHHHHHHHHSCSSCCC---HHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEE
T ss_pred CCCH--HHHHHHHHHHHHhcCCCch---HHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCcccee
Confidence 0111 1223445555554444443 345677899999999999997 7889999998888654
No 11
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.82 E-value=3.7e-20 Score=212.34 Aligned_cols=241 Identities=21% Similarity=0.223 Sum_probs=170.4
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCce----eecCCCCC------
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGV----YTTGRGSS------ 405 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~----~~~~~~~~------ 405 (718)
.+++|++.++..+..++..|. +++|+||||||||++|++++..+++.. ...+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~--------------~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i 106 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR--------------HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRI 106 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC--------------CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEE
T ss_pred ceEECchhhHhhccccccCCC--------------EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcE
Confidence 368899999999999998875 899999999999999999999986542 11111000
Q ss_pred ------------------------------------------------------------CCcceeeEeecc------cc
Q 005024 406 ------------------------------------------------------------GVGLTAAVQRDN------VT 419 (718)
Q Consensus 406 ------------------------------------------------------------~~~l~~~~~~~~------~~ 419 (718)
...+++....++ .+
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 001111111110 01
Q ss_pred c-ceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCe----------EEEecCceEEEEEeCCCCC
Q 005024 420 N-EMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGI----------TTSLNARTAVLSAANPAWG 488 (718)
Q Consensus 420 g-~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~----------~~~l~~~~~viaa~Np~~g 488 (718)
| ...+.+|.+..|++|+|||||++.|++..|..|+++|+++.+.+. |. ....|.++.||+|+|+...
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred cccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHHH
Confidence 1 112578888999999999999999999999999999999998876 43 4566789999999998621
Q ss_pred CCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH----h-
Q 005024 489 RYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR----R- 563 (718)
Q Consensus 489 ~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~----~- 563 (718)
-.++++|++||+++-+..+.++.. +...+.+..|+.+.. .
T Consensus 265 -----------~~l~~~l~~R~~v~~i~i~l~~~~------------------------~~~~~~~~~~l~~~~~~~~~~ 309 (604)
T 3k1j_A 265 -----------DKMHPALRSRIRGYGYEVYMRTTM------------------------PDTIENRRKLVQFVAQEVKRD 309 (604)
T ss_dssp -----------HHSCHHHHHHHHHHSEEEECCSEE------------------------ECCHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhcCHHHHHHhhccceEeeccccc------------------------cCCHHHHHHHHHHHHHHHhhc
Confidence 058999999997411111212111 122333444443332 2
Q ss_pred -cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 564 -LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 564 -~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
..+.+++++.+.|.++|..... .....+.++|++.++++.|.++|+.++++.|+.+||.+|+..
T Consensus 310 ~~~~~ls~eAl~~Li~~~~r~~g-----~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 310 GKIPHFTKEAVEEIVREAQKRAG-----RKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CSSCCBBHHHHHHHHHHHHHTTC-----STTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCcccCCHHHHHHHHHHHhhhhc-----cccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3467999999999998853221 122356789999999999999999999999999999999864
No 12
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.77 E-value=4.6e-17 Score=173.00 Aligned_cols=293 Identities=20% Similarity=0.229 Sum_probs=188.4
Q ss_pred HHHHHHhhcCC----cccccHHHHHHHHHHHhCCcccc-CCCCccccccceeeecCCCcchHHHHHHHHHHHCCCcee-e
Q 005024 326 IYNKLARSLAP----EIYGHEDIKKALLLLLVGAPHRK-LKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVY-T 399 (718)
Q Consensus 326 ~~~~l~~si~p----~i~g~~~~k~~i~~~l~~~~~~~-~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~-~ 399 (718)
+|+.+...+.| .++|++.++..+...+..|.... ... |++|+||||+|||++++.++..+...+. +
T Consensus 11 ~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~--------~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~ 82 (334)
T 1in4_A 11 VYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLD--------HVLLAGPPGLGKTTLAHIIASELQTNIHVT 82 (334)
T ss_dssp ------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCC--------CEEEESSTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCC--------eEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 45555566666 67899988888887775431110 111 8999999999999999999998754322 2
Q ss_pred cCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEe--eC---CeEEEec
Q 005024 400 TGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIA--KA---GITTSLN 474 (718)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~--k~---g~~~~l~ 474 (718)
.|..... .+.. ..-.-....+.|+||||++.+.+..+..|+..|+...+.+. +. .......
T Consensus 83 sg~~~~~------------~~~l--~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 83 SGPVLVK------------QGDM--AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp ETTTCCS------------HHHH--HHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------
T ss_pred echHhcC------------HHHH--HHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 2221110 0000 00000123467999999999998888888888876532210 00 0011122
Q ss_pred CceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHH
Q 005024 475 ARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAIL 554 (718)
Q Consensus 475 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l 554 (718)
.++.+++++|... .++.++.+||.+.+. +.+++.+.+
T Consensus 149 ~~~~li~at~~~~-------------~Ls~~l~sR~~l~~~------------------------------Ld~~~~~~l 185 (334)
T 1in4_A 149 QPFTLVGATTRSG-------------LLSSPLRSRFGIILE------------------------------LDFYTVKEL 185 (334)
T ss_dssp CCCEEEEEESCGG-------------GSCHHHHTTCSEEEE------------------------------CCCCCHHHH
T ss_pred CCeEEEEecCCcc-------------cCCHHHHHhcCceee------------------------------CCCCCHHHH
Confidence 4678888888765 799999999976643 344556666
Q ss_pred HHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 555 RAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 555 ~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
.+++..... ....+++++.+.|.+. ..+++|.+.++++.+...|..+++..|+.+++.+|+..+
T Consensus 186 ~~iL~~~~~~~~~~~~~~~~~~ia~~---------------~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 186 KEIIKRAASLMDVEIEDAAAEMIAKR---------------SRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHT---------------STTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHh---------------cCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 666665443 4446888888888762 578999999999999999988888899999999999875
Q ss_pred hhhcccccccccccCccchH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHH-HHHhcCeEEEeCCee
Q 005024 634 QMSKFSLYSDDRQRSGLDAI-SDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLE-EYAALNVWQIHPHTF 711 (718)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~-~l~~~g~i~~~~~~~ 711 (718)
..... ..+.. ..++.++-. ..++..+.+.++. ...|.++.++++.++ .|.+.|++..+..|+
T Consensus 251 ~~~~~----------~l~~~~~~~l~~~~~---~~~~~~~~~~~l~---~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr 314 (334)
T 1in4_A 251 NIDDE----------GLDEFDRKILKTIIE---IYRGGPVGLNALA---ASLGVEADTLSEVYEPYLLQAGFLARTPRGR 314 (334)
T ss_dssp TCCTT----------CCCHHHHHHHHHHHH---HSTTCCBCHHHHH---HHHTSCHHHHHHHTHHHHHHTTSEEEETTEE
T ss_pred CCCcC----------CCCHHHHHHHHHHHH---HhCCCcchHHHHH---HHhCCCcchHHHHHHHHHHHcCCeecccccH
Confidence 42211 11111 234443333 2233356666554 455778888888888 889999999999988
Q ss_pred EEE
Q 005024 712 DIR 714 (718)
Q Consensus 712 ~i~ 714 (718)
.++
T Consensus 315 ~~~ 317 (334)
T 1in4_A 315 IVT 317 (334)
T ss_dssp EEC
T ss_pred Hhh
Confidence 754
No 13
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=1.8e-18 Score=181.76 Aligned_cols=267 Identities=18% Similarity=0.215 Sum_probs=161.3
Q ss_pred HHHHhhcCCcccccHHHHHHHHHHHhCCcccc-CCCCc-cccccceeeecCCCcchHHHHHHHHHHHCCCceeecCC-CC
Q 005024 328 NKLARSLAPEIYGHEDIKKALLLLLVGAPHRK-LKDGM-KIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGR-GS 404 (718)
Q Consensus 328 ~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~-~~~~~-~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~-~~ 404 (718)
+.+.+++.+.|+|++.+++++..++....... ...+. ..+...++||+||||||||++|+++++.++..++.... ..
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 34567778899999999999988776410000 00000 00112389999999999999999999998665443111 11
Q ss_pred CCCcceeeEeecccccceeeecceEeee-cCCeeeecccccCChHH------------HHHHHHhhcccEEEEeeCCeEE
Q 005024 405 SGVGLTAAVQRDNVTNEMVLEGGALVLA-DMGICAIDEFDKMDESD------------RTAIHEVMEQQTVSIAKAGITT 471 (718)
Q Consensus 405 ~~~~l~~~~~~~~~~g~~~~~~g~l~~a-~~gil~iDEi~~~~~~~------------~~~L~~~me~~~i~i~k~g~~~ 471 (718)
...++.+..........+...+|.+..+ .++++||||++++.++. +..|+++|+.+.+... .| .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~-~~--~ 163 (310)
T 1ofh_A 87 TEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTK-HG--M 163 (310)
T ss_dssp SSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEET-TE--E
T ss_pred ccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecc-cc--c
Confidence 1111111000000000001112333333 47899999999998765 8899999998876553 22 2
Q ss_pred EecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCH
Q 005024 472 SLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEP 551 (718)
Q Consensus 472 ~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 551 (718)
.-+.++.+|+++|+.... ...++++|++||++.+.+ +.++.+....+.++...
T Consensus 164 ~~~~~~~~i~~~~~~~~~---------~~~l~~~l~~R~~~~i~~-~~~~~~~~~~il~~~~~----------------- 216 (310)
T 1ofh_A 164 VKTDHILFIASGAFQVAR---------PSDLIPELQGRLPIRVEL-TALSAADFERILTEPHA----------------- 216 (310)
T ss_dssp EECTTCEEEEEECCSSSC---------GGGSCHHHHHTCCEEEEC-CCCCHHHHHHHHHSSTT-----------------
T ss_pred ccCCcEEEEEcCCcccCC---------cccCCHHHHhhCCceEEc-CCcCHHHHHHHHHhhHH-----------------
Confidence 335678999998754210 016899999999965544 56665555555443111
Q ss_pred HHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCC-----C-CccH
Q 005024 552 AILRAYISAARR--LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFS-----E-TVAQ 623 (718)
Q Consensus 552 ~~l~~~i~~~~~--~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~-----~-~V~~ 623 (718)
.+++++....+. ....+++++.+.|.+++...+.. ...+++|++.++++.+.+.+..+.. . .|+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~-------~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 289 (310)
T 1ofh_A 217 SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK-------TENIGARRLHTVMERLMDKISFSASDMNGQTVNIDA 289 (310)
T ss_dssp CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH-------SCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECH
T ss_pred HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc-------ccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEee
Confidence 133444333333 23469999999999876433221 1358999999999876644332221 1 4999
Q ss_pred HHHHHHHH
Q 005024 624 SDVDEALR 631 (718)
Q Consensus 624 ~dv~~ai~ 631 (718)
+||.+|+.
T Consensus 290 ~~v~~~l~ 297 (310)
T 1ofh_A 290 AYVADALG 297 (310)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 99998875
No 14
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.75 E-value=2.4e-18 Score=176.86 Aligned_cols=231 Identities=13% Similarity=0.133 Sum_probs=139.7
Q ss_pred CcccccHHHHHHHHHHHh--CCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---eee--cCCCCCC--
Q 005024 336 PEIYGHEDIKKALLLLLV--GAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---VYT--TGRGSSG-- 406 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~--~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~~~--~~~~~~~-- 406 (718)
..++|+......++..+. ... +.++||+||||||||++|++++..+++. +.. ++.....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~------------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~ 73 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPL------------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTS------------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCC------------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHH
Confidence 346787776555543332 111 1289999999999999999999998642 211 2211100
Q ss_pred -CcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCC
Q 005024 407 -VGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANP 485 (718)
Q Consensus 407 -~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np 485 (718)
..+.+. .+..++|......|.+..+++|++||||++.++.+.|..|+++|+++.+. +.|.....+.++++|+|+|+
T Consensus 74 ~~~l~g~-~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 74 DSELFGH-EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHHHCC-C---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEEC--CCCC--CEECCCEEEEEESS
T ss_pred HHHhcCC-cccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCee--cCCCcccccCCeEEEEecCc
Confidence 000000 01122333333456666788999999999999999999999999998764 34666667788999999998
Q ss_pred CCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH-HHhc
Q 005024 486 AWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA-ARRL 564 (718)
Q Consensus 486 ~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~ 564 (718)
..... ...-.+.++|++||+.+.+- .|+......... ..++.++.. ++..
T Consensus 151 ~~~~~------~~~~~~~~~L~~Rl~~~~i~--lp~L~~R~~di~---------------------~l~~~~l~~~~~~~ 201 (265)
T 2bjv_A 151 DLPAM------VNEGTFRADLLDALAFDVVQ--LPPLRERESDIM---------------------LMAEYFAIQMCREI 201 (265)
T ss_dssp CHHHH------HHHTSSCHHHHHHHCSEEEE--CCCGGGCHHHHH---------------------HHHHHHHHHHHHHT
T ss_pred CHHHH------HHcCCccHHHHHhhcCcEEe--CCChhhhhHHHH---------------------HHHHHHHHHHHHHh
Confidence 62100 01115789999999764432 333322111000 112222222 2222
Q ss_pred --C--CCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 005024 565 --S--PCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD 627 (718)
Q Consensus 565 --~--p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 627 (718)
. +.+++++.+.|..+ .|++++|+|.++++.+...+ ....|+.+|+.
T Consensus 202 ~~~~~~~~~~~a~~~L~~~--------------~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l~ 251 (265)
T 2bjv_A 202 KLPLFPGFTERARETLLNY--------------RWPGNIRELKNVVERSVYRH---GTSDYPLDDII 251 (265)
T ss_dssp TCSSCCCBCHHHHHHHHHS--------------CCTTHHHHHHHHHHHHHHHH---CCSSSCBCCCC
T ss_pred CCCcccCcCHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHHhC---CCCcCcHHHcc
Confidence 1 47999999998875 69999999999999887766 35577777763
No 15
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.75 E-value=7.3e-19 Score=190.38 Aligned_cols=209 Identities=15% Similarity=0.234 Sum_probs=148.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHHCCCc---eee--cCCCCCC---CcceeeEeecccccceeeecceEeeecCCeeeecc
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVAPRG---VYT--TGRGSSG---VGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDE 441 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~~~~---~~~--~~~~~~~---~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDE 441 (718)
.+||+.|++||||+.+|++++..+++. +.. |+..+.. ..|.+. .+..++|.....+|.+..|++|++||||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~-~~g~~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGY-EKGAFTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCB-CTTSSTTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCC-CCCCCCCcccccCCceeeCCCcEEEEcC
Confidence 389999999999999999999998753 222 3332210 112221 2334566666678999999999999999
Q ss_pred cccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC------CCCCCCCCCcchhcCCChhhhcccceEEE
Q 005024 442 FDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA------WGRYDLRRTPAENINLPPALLSRFDLLWL 515 (718)
Q Consensus 442 i~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~------~g~~~~~~~~~~~~~l~~~ll~Rfdli~~ 515 (718)
|+.|+.+.|..|+++|+++.+... |.....+.++++|+|||.. .| .+.+.|+.|+..+.+
T Consensus 240 i~~l~~~~q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~~~l~~~~~~g------------~fr~dl~~rl~~~~i 305 (387)
T 1ny5_A 240 IGELSLEAQAKLLRVIESGKFYRL--GGRKEIEVNVRILAATNRNIKELVKEG------------KFREDLYYRLGVIEI 305 (387)
T ss_dssp GGGCCHHHHHHHHHHHHHSEECCB--TCCSBEECCCEEEEEESSCHHHHHHTT------------SSCHHHHHHHTTEEE
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCCCCHHHHHHcC------------CccHHHHHhhcCCee
Confidence 999999999999999999987654 7777788899999999986 34 467788888876654
Q ss_pred eccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCc
Q 005024 516 ILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHS 595 (718)
Q Consensus 516 ~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~ 595 (718)
-. |...+.. ++++.+...+++++........+.+++++.+.|..| +|
T Consensus 306 ~l--PpLreR~-----------------~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~--------------~w 352 (387)
T 1ny5_A 306 EI--PPLRERK-----------------EDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY--------------PW 352 (387)
T ss_dssp EC--CCGGGCH-----------------HHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS--------------CC
T ss_pred cC--Ccchhcc-----------------ccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC--------------CC
Confidence 32 3322110 011122233444433222222346999999999886 79
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 005024 596 YTTVRTLLSILRISAALARLRFSETVAQSDVDEA 629 (718)
Q Consensus 596 ~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~a 629 (718)
|||+|+|+++++.+...| ....|+.+|+...
T Consensus 353 pGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 353 YGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp TTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 999999999999887766 4568999998654
No 16
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.74 E-value=1.8e-18 Score=187.26 Aligned_cols=271 Identities=17% Similarity=0.162 Sum_probs=146.2
Q ss_pred HHhhcCCcccccHHHHHHHHHHHhCCccccC---------------C---CCccccccceeeecCCCcchHHHHHHHHHH
Q 005024 330 LARSLAPEIYGHEDIKKALLLLLVGAPHRKL---------------K---DGMKIRGDLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 330 l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~---------------~---~~~~~r~~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
+.+.+...|+|++.+|++|..++........ + .+...++..++||+||||||||++|+++++
T Consensus 15 l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 15 LKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4455667899999999999887731100000 0 000012334899999999999999999999
Q ss_pred HCCCceeecCCCC-CCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChH--------------HHHHHHHh
Q 005024 392 VAPRGVYTTGRGS-SGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES--------------DRTAIHEV 456 (718)
Q Consensus 392 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~--------------~~~~L~~~ 456 (718)
.+...++...... +..++.+........+.+....|.+..+.+|++||||++++... .++.|+++
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ 174 (376)
T 1um8_A 95 HLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 174 (376)
T ss_dssp HTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHH
T ss_pred HhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHH
Confidence 9876554421111 11122111111111111122234455667899999999999988 89999999
Q ss_pred hcccEEEEeeCCeEEEec--------CceEEEEEeCCC------CCCCCC-----CCCcc-----------------hhc
Q 005024 457 MEQQTVSIAKAGITTSLN--------ARTAVLSAANPA------WGRYDL-----RRTPA-----------------ENI 500 (718)
Q Consensus 457 me~~~i~i~k~g~~~~l~--------~~~~viaa~Np~------~g~~~~-----~~~~~-----------------~~~ 500 (718)
||.+.+.+...|.....+ .++.+|+|+|.. ..++.. ..... ...
T Consensus 175 le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (376)
T 1um8_A 175 VEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTY 254 (376)
T ss_dssp HHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHT
T ss_pred hhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhc
Confidence 998877665555554443 345666666632 111110 00000 033
Q ss_pred CCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHH
Q 005024 501 NLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR--LSPCVPRELEEYIAA 578 (718)
Q Consensus 501 ~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~ls~~~~~~l~~ 578 (718)
.+.++|++||+.++.+ ...+.+.-..++.+.++ ..++++...... ....+++++.+.|..
T Consensus 255 ~~~p~l~~R~~~~i~~-~~l~~~~l~~i~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 316 (376)
T 1um8_A 255 GLIPELIGRLPVLSTL-DSISLEAMVDILQKPKN-----------------ALIKQYQQLFKMDEVDLIFEEEAIKEIAQ 316 (376)
T ss_dssp TCCHHHHTTCCEEEEC-CCCCHHHHHHHHHSSTT-----------------CHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred CCChHHhcCCCceeec-cCCCHHHHHHHHhhhHH-----------------HHHHHHHHHHhhcCceEEECHHHHHHHHH
Confidence 5788999999877554 33333333333221110 122222222211 233589999999988
Q ss_pred HHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCC------CCccHHHHHHHH
Q 005024 579 AYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFS------ETVAQSDVDEAL 630 (718)
Q Consensus 579 ~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~------~~V~~~dv~~ai 630 (718)
+.. .+.+++|.|.+++..+...+..+.. -.|+.+++..+.
T Consensus 317 ~~~------------~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 317 LAL------------ERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHH------------HTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred Hhc------------ccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 731 1348899999999866554433221 148888876543
No 17
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.73 E-value=6.6e-18 Score=181.38 Aligned_cols=201 Identities=18% Similarity=0.237 Sum_probs=140.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc--eee--cCCCCCC---CcceeeEeecccccceeeecceEeeecCCeeeecccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG--VYT--TGRGSSG---VGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFD 443 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~--~~~--~~~~~~~---~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~ 443 (718)
++|+.|++||||+.+|+++|..+++. +.. |+..+.. ..|.+ ..+..++|.....+|.+..|++|++|||||+
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg-~~~g~~tga~~~~~g~~~~a~~gtlfldei~ 232 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFG-HEKGAFTGALTRKKGKLELADQGTLFLDEVG 232 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHE-ECSCSSSSCCCCEECHHHHTTTSEEEEETGG
T ss_pred hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcC-ccccccCCcccccCChHhhcCCCeEEecChh
Confidence 89999999999999999999998764 222 4433221 11222 2234566766678899999999999999999
Q ss_pred cCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChh
Q 005024 444 KMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMD 523 (718)
Q Consensus 444 ~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~ 523 (718)
.|+.+.|..|+++|+++.+... |.....+.++++|+|||..... ....-.+.+.|+.|+..+.+-.++....
T Consensus 233 ~l~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~~~l~~------~v~~g~fr~dL~~rl~~~~i~lPpLreR 304 (368)
T 3dzd_A 233 ELDQRVQAKLLRVLETGSFTRL--GGNQKIEVDIRVISATNKNLEE------EIKKGNFREDLYYRLSVFQIYLPPLRER 304 (368)
T ss_dssp GSCHHHHHHHHHHHHHSEECCB--TCCCBEECCCEEEEEESSCHHH------HHHTTSSCHHHHHHHTSEEEECCCGGGS
T ss_pred hCCHHHHHHHHHHHHhCCcccC--CCCcceeeeeEEEEecCCCHHH------HHHcCCccHHHHHHhCCeEEeCCChhhc
Confidence 9999999999999999988765 7777788899999999977100 0011156788888887665432222221
Q ss_pred HHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHH
Q 005024 524 SDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLL 603 (718)
Q Consensus 524 ~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~ 603 (718)
.++++.+...+++++........+.+++++.+.|..| +||||+|+|+
T Consensus 305 -------------------~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--------------~wpGNvreL~ 351 (368)
T 3dzd_A 305 -------------------GKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ--------------EWKGNVRELK 351 (368)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC--------------CCTTHHHHHH
T ss_pred -------------------hhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC--------------CCCcHHHHHH
Confidence 0122223333444433322223356999999999986 7999999999
Q ss_pred HHHHHHHHHH
Q 005024 604 SILRISAALA 613 (718)
Q Consensus 604 ~lirla~a~A 613 (718)
++++.+...+
T Consensus 352 n~i~~~~~~~ 361 (368)
T 3dzd_A 352 NLIERAVILC 361 (368)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhC
Confidence 9999886654
No 18
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.71 E-value=1.4e-18 Score=187.10 Aligned_cols=254 Identities=15% Similarity=0.169 Sum_probs=141.8
Q ss_pred HhhcCCcccccHHHHHHHHHHHhCCccccC---CCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCC-CC
Q 005024 331 ARSLAPEIYGHEDIKKALLLLLVGAPHRKL---KDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS-SG 406 (718)
Q Consensus 331 ~~si~p~i~g~~~~k~~i~~~l~~~~~~~~---~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~-~~ 406 (718)
...+...|+|++.+++.+..++........ ..........++||+||||||||++|+++|+.+...++...... ..
T Consensus 10 ~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~ 89 (363)
T 3hws_A 10 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 89 (363)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcc
Confidence 334445689999999998877731110000 00000112338999999999999999999999876655421110 00
Q ss_pred CcceeeEeecccccceeeecceEeeecCCeeeecccccCChH--------------HHHHHHHhhcccEEEEeeCCeEEE
Q 005024 407 VGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES--------------DRTAIHEVMEQQTVSIAKAGITTS 472 (718)
Q Consensus 407 ~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~k~g~~~~ 472 (718)
.++.+.......++.+...++.+..+.+||+||||++++++. .++.|+++|+...+.+...|....
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~ 169 (363)
T 3hws_A 90 AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKH 169 (363)
T ss_dssp CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------------
T ss_pred cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcccccc
Confidence 111111101111111222334445567899999999999877 899999999944444432222222
Q ss_pred e--------cCceEEEEEeCCC---------CCC-----CCCCC----------Ccchhc--------CCChhhhcccce
Q 005024 473 L--------NARTAVLSAANPA---------WGR-----YDLRR----------TPAENI--------NLPPALLSRFDL 512 (718)
Q Consensus 473 l--------~~~~~viaa~Np~---------~g~-----~~~~~----------~~~~~~--------~l~~~ll~Rfdl 512 (718)
- -++..+|+++|.. .++ |.... .+.+.+ .+.++|++|||.
T Consensus 170 ~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~ 249 (363)
T 3hws_A 170 PQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 249 (363)
T ss_dssp ----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCE
T ss_pred CCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCe
Confidence 1 2455566666643 011 10000 011111 289999999998
Q ss_pred EEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHH-HHHhhHhhhh
Q 005024 513 LWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR--LSPCVPRELEEYIAAA-YSNIRQEEAK 589 (718)
Q Consensus 513 i~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~ls~~~~~~l~~~-y~~lr~~~~~ 589 (718)
++.+ .+++.+.-..|+...++ .+++++...... ....+++++.+.|.++ |
T Consensus 250 ~~~~-~pl~~~~~~~I~~~~~~-----------------~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~--------- 302 (363)
T 3hws_A 250 VATL-NELSEEALIQILKEPKN-----------------ALTKQYQALFNLEGVDLEFRDEALDAIAKKAM--------- 302 (363)
T ss_dssp EEEC-CCCCHHHHHHHHHSSTT-----------------CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH---------
T ss_pred eeec-CCCCHHHHHHHHHHHHH-----------------HHHHHHHHHHHhcCceEEECHHHHHHHHHhhc---------
Confidence 8764 56666555555443111 134444433332 2345899999999874 3
Q ss_pred cCCCCcccCHHHHHHHHHHHHHHHHh
Q 005024 590 SNTPHSYTTVRTLLSILRISAALARL 615 (718)
Q Consensus 590 ~~~~~~~~s~R~l~~lirla~a~A~l 615 (718)
.|++++|+|+++++.+...+-.
T Consensus 303 ----~~~~gaR~L~~~ie~~~~~~l~ 324 (363)
T 3hws_A 303 ----ARKTGARGLRSIVEAALLDTMY 324 (363)
T ss_dssp ----HTTCTTTTHHHHHHHHHHHHHH
T ss_pred ----CCccCchHHHHHHHHHHHHHHH
Confidence 4889999999999866554433
No 19
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.70 E-value=9.7e-17 Score=176.28 Aligned_cols=204 Identities=20% Similarity=0.239 Sum_probs=134.7
Q ss_pred CcccccHHHH---HHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceee
Q 005024 336 PEIYGHEDIK---KALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAA 412 (718)
Q Consensus 336 p~i~g~~~~k---~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~ 412 (718)
.+++|++.+. +.+..++..+... ++||+||||||||++|+.+++.+...++........ . .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~------------~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~--~--~ 89 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLH------------SMILWGPPGTGKTTLAEVIARYANADVERISAVTSG--V--K 89 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCC------------EEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC--H--H
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCc------------EEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC--H--H
Confidence 3799999998 6777777766422 899999999999999999999987665442211111 0 0
Q ss_pred EeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCC
Q 005024 413 VQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDL 492 (718)
Q Consensus 413 ~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~ 492 (718)
..+....... .....+.++++||||++.++.+.|..|+..||++. +.+|++++... .+
T Consensus 90 ~ir~~~~~a~----~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~---------------v~lI~att~n~-~~-- 147 (447)
T 3pvs_A 90 EIREAIERAR----QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT---------------ITFIGATTENP-SF-- 147 (447)
T ss_dssp HHHHHHHHHH----HHHHTTCCEEEEEETTTCC------CCHHHHHTTS---------------CEEEEEESSCG-GG--
T ss_pred HHHHHHHHHH----HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc---------------eEEEecCCCCc-cc--
Confidence 0111000000 00012357899999999999999999999999753 45677774331 01
Q ss_pred CCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh--------c
Q 005024 493 RRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR--------L 564 (718)
Q Consensus 493 ~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--------~ 564 (718)
.++++|++||..+. + .+++.+.+..++..... .
T Consensus 148 --------~l~~aL~sR~~v~~-l------------------------------~~l~~edi~~il~~~l~~~~~~~~~~ 188 (447)
T 3pvs_A 148 --------ELNSALLSRARVYL-L------------------------------KSLSTEDIEQVLTQAMEDKTRGYGGQ 188 (447)
T ss_dssp --------SSCHHHHTTEEEEE-C------------------------------CCCCHHHHHHHHHHHHHCTTTSSTTS
T ss_pred --------ccCHHHhCceeEEe-e------------------------------CCcCHHHHHHHHHHHHHHHhhhhccc
Confidence 78999999996443 2 33444555555544322 1
Q ss_pred CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhc--CCCCccHHHHHHHHH
Q 005024 565 SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLR--FSETVAQSDVDEALR 631 (718)
Q Consensus 565 ~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~--~~~~V~~~dv~~ai~ 631 (718)
...+++++.+.|..+ |++++|.+.++++.+...|... +...||.+||.+++.
T Consensus 189 ~~~i~~~al~~L~~~---------------~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 189 DIVLPDETRRAIAEL---------------VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp SEECCHHHHHHHHHH---------------HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred cCcCCHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 235899999999986 6899999999999988877543 445799999998875
No 20
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.69 E-value=2.5e-17 Score=173.31 Aligned_cols=244 Identities=13% Similarity=0.121 Sum_probs=149.1
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc---eee--cC
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG---VYT--TG 401 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~---~~~--~~ 401 (718)
+..+.+.+...++|++.+++.+..++..+.... .. ..+..-++||+||||||||++|++++..+.+. ++. ++
T Consensus 8 l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~-~~--~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 8 LLRLEEELHKRVVGQDEAIRAVADAIRRARAGL-KD--PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp HHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTC-SC--TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CC--CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 345667777889999999888887775432100 00 01122289999999999999999999987432 221 21
Q ss_pred CCCCCC---cceeeEeecccccce--eeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCc
Q 005024 402 RGSSGV---GLTAAVQRDNVTNEM--VLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNAR 476 (718)
Q Consensus 402 ~~~~~~---~l~~~~~~~~~~g~~--~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~ 476 (718)
...... .+.+.. ....|.. ..-.+++..+.+|++||||+++++++.+..|+++|+++.+... .|....+ .+
T Consensus 85 ~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~-~~~~~~~-~~ 160 (311)
T 4fcw_A 85 EYMEKHAVSRLIGAP--PGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDS-HGRTVDF-RN 160 (311)
T ss_dssp GCCSTTHHHHHHCCC--TTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECT-TSCEEEC-TT
T ss_pred cccccccHHHhcCCC--CccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcC-CCCEEEC-CC
Confidence 111100 000000 0000100 0011223334578999999999999999999999999887743 2333332 36
Q ss_pred eEEEEEeCCC-------CCCCCCCCCcchhc------CCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCC
Q 005024 477 TAVLSAANPA-------WGRYDLRRTPAENI------NLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPA 543 (718)
Q Consensus 477 ~~viaa~Np~-------~g~~~~~~~~~~~~------~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~ 543 (718)
+.+|+|+|+. .+.......+.+.+ .++++|++||+.++.+ .+++.+.-..|+.+.+.
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~-~p~~~~~~~~i~~~~l~--------- 230 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVF-RPLTKEQIRQIVEIQMS--------- 230 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEEC-CCCCHHHHHHHHHHHTH---------
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEe-CCCCHHHHHHHHHHHHH---------
Confidence 7799999983 11111222222222 6899999999988775 45555555555554332
Q ss_pred CCCCCCCHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCc--ccCHHHHHHHHHHHHHHH
Q 005024 544 LGFTPLEPAILRAYISAAR--RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHS--YTTVRTLLSILRISAALA 613 (718)
Q Consensus 544 ~~~~~~~~~~l~~~i~~~~--~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~--~~s~R~l~~lirla~a~A 613 (718)
++..... ...+.+++++.+.|.++ .| ++++|+|.++++.+...|
T Consensus 231 ------------~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 231 ------------YLRARLAEKRISLELTEAAKDFLAER--------------GYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp ------------HHHHHHHTTTCEEEECHHHHHHHHHH--------------SCBTTTBTTTHHHHHHHHTHHH
T ss_pred ------------HHHHHHHhCCcEEEeCHHHHHHHHHh--------------CCCccCCchhHHHHHHHHHHHH
Confidence 2222221 12346999999999886 46 899999999998665433
No 21
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.63 E-value=2.4e-16 Score=177.89 Aligned_cols=240 Identities=21% Similarity=0.233 Sum_probs=142.1
Q ss_pred cCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeec--CCCCCCCccee
Q 005024 334 LAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTT--GRGSSGVGLTA 411 (718)
Q Consensus 334 i~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~--~~~~~~~~l~~ 411 (718)
+..+++|++.+++.+.-.+.-........| -++||+||||||||++|++++..++...... +.......+.+
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~~~~g------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTKSLKG------PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSSSCCS------CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcccCCC------CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 345789999998887543321110000011 1799999999999999999999987654432 11111111111
Q ss_pred eEeecccccceeeecce----Eee--ecCCeeeecccccCChHH----HHHHHHhhcccEEE-EeeCCeEEEec-CceEE
Q 005024 412 AVQRDNVTNEMVLEGGA----LVL--ADMGICAIDEFDKMDESD----RTAIHEVMEQQTVS-IAKAGITTSLN-ARTAV 479 (718)
Q Consensus 412 ~~~~~~~~g~~~~~~g~----l~~--a~~gil~iDEi~~~~~~~----~~~L~~~me~~~i~-i~k~g~~~~l~-~~~~v 479 (718)
.. + .+.|. .+|. +.. ..++++||||++++..+. ++.|+++|+.+... +...+.....+ .++.+
T Consensus 153 ~~-~-~~ig~---~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 153 HR-R-TYVGA---MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ----------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HH-H-HHhcc---CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 10 0 01111 1111 111 256799999999999874 48899999753221 11122233333 57899
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYIS 559 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~ 559 (718)
|+|+|+.. .++++|++||+.+ ..+.|+.+++..|+...+ +.++..
T Consensus 228 I~ttN~~~-------------~l~~aL~~R~~vi--~~~~~~~~e~~~Il~~~l--------------------~~~~~~ 272 (543)
T 3m6a_A 228 IATANNLA-------------TIPGPLRDRMEII--NIAGYTEIEKLEIVKDHL--------------------LPKQIK 272 (543)
T ss_dssp EEECSSTT-------------TSCHHHHHHEEEE--ECCCCCHHHHHHHHHHTH--------------------HHHHHH
T ss_pred EeccCccc-------------cCCHHHHhhccee--eeCCCCHHHHHHHHHHHH--------------------HHHHHH
Confidence 99999976 7999999999753 346777766666644322 222222
Q ss_pred HHHh--cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhc------CCCCccHHHHHHHHH
Q 005024 560 AARR--LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLR------FSETVAQSDVDEALR 631 (718)
Q Consensus 560 ~~~~--~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~------~~~~V~~~dv~~ai~ 631 (718)
.... ....+++++.+.+...| .|++++|+|++.+..+...|... ....|+.+|+.+++.
T Consensus 273 ~~~~~~~~i~i~~~~l~~l~~~~-------------~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 273 EHGLKKSNLQLRDQAILDIIRYY-------------TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIG 339 (543)
T ss_dssp HTTCCGGGCEECHHHHHHHHHHH-------------CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHC
T ss_pred HcCCCcccccCCHHHHHHHHHhC-------------ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhC
Confidence 2111 12257999999988876 68999999998887555444332 334699999999875
Q ss_pred H
Q 005024 632 L 632 (718)
Q Consensus 632 l 632 (718)
.
T Consensus 340 ~ 340 (543)
T 3m6a_A 340 K 340 (543)
T ss_dssp S
T ss_pred C
Confidence 3
No 22
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.5e-16 Score=164.46 Aligned_cols=189 Identities=16% Similarity=0.136 Sum_probs=120.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCC---CCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRG---SSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
.+||+||||||||++|+++|..+...++..... +...|-+...++..+.-. ......|+||||+|.+..
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~A--------r~~aP~IIFiDEiDai~~ 255 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMA--------REHAPSIIFMDEIDSIGS 255 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHH--------HHTCSEEEEEESSSCCTT
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHH--------HHhCCceEeeecchhhcc
Confidence 699999999999999999999987776552111 011111111111111000 001246999999998732
Q ss_pred H--------------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccc
Q 005024 448 S--------------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFD 511 (718)
Q Consensus 448 ~--------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfd 511 (718)
. ....|+..|+. .. -..++.||||||.+. .|++||++ |||
T Consensus 256 ~R~~~~~~~~~~~~~~l~~lL~~lDg---------~~--~~~~V~vIaATNrpd-------------~LDpAllRpGRfD 311 (405)
T 4b4t_J 256 TRVEGSGGGDSEVQRTMLELLNQLDG---------FE--TSKNIKIIMATNRLD-------------ILDPALLRPGRID 311 (405)
T ss_dssp SCSCSSSGGGGHHHHHHHHHHHHHHT---------TT--CCCCEEEEEEESCSS-------------SSCHHHHSTTSSC
T ss_pred CCCCCCCCCcHHHHHHHHHHHHhhhc---------cC--CCCCeEEEeccCChh-------------hCCHhHcCCCcCc
Confidence 1 12345555542 11 124678999999887 89999998 999
Q ss_pred eEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcC
Q 005024 512 LLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSN 591 (718)
Q Consensus 512 li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~ 591 (718)
..+.+ +.|+.....+|.+..+.... ..+.++ .+.|+..
T Consensus 312 ~~I~i-~lPd~~~R~~Il~~~~~~~~--------------------------l~~dvd---l~~lA~~------------ 349 (405)
T 4b4t_J 312 RKIEF-PPPSVAARAEILRIHSRKMN--------------------------LTRGIN---LRKVAEK------------ 349 (405)
T ss_dssp CEEEC-CCCCHHHHHHHHHHHHTTSB--------------------------CCSSCC---HHHHHHH------------
T ss_pred eEEEc-CCcCHHHHHHHHHHHhcCCC--------------------------CCccCC---HHHHHHH------------
Confidence 88765 88888777766443322110 001111 2233332
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 592 TPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 592 ~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
....|.+.+.++++-|...|-.+.+..|+.+|+..|+.-+..
T Consensus 350 --t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 350 --MNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp --CCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 345788999999999988887788889999999999986644
No 23
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.63 E-value=3.7e-16 Score=164.27 Aligned_cols=233 Identities=16% Similarity=0.135 Sum_probs=142.1
Q ss_pred HHHHhhcCCcccccHHHHHHHHHHHhCCcc--ccCCCCcc-ccccceeeecCCCcchHHHHHHHHHHHCCC-------ce
Q 005024 328 NKLARSLAPEIYGHEDIKKALLLLLVGAPH--RKLKDGMK-IRGDLHICLMGDPGVAKSQLLKHIINVAPR-------GV 397 (718)
Q Consensus 328 ~~l~~si~p~i~g~~~~k~~i~~~l~~~~~--~~~~~~~~-~r~~i~vLl~G~pGtGKt~la~~i~~~~~~-------~~ 397 (718)
+.+...+..+|+|++.+|+.+...+..... .....|.. .++..|+||+||||||||++|+++++.+.. .+
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~ 102 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL 102 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCE
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcE
Confidence 445566667899999999988744321000 00000000 122238999999999999999999987632 11
Q ss_pred eecCCCCCCCcceeeEeecccccce-eeecceEeeecCCeeeecccccC---------ChHHHHHHHHhhcccEEEEeeC
Q 005024 398 YTTGRGSSGVGLTAAVQRDNVTNEM-VLEGGALVLADMGICAIDEFDKM---------DESDRTAIHEVMEQQTVSIAKA 467 (718)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~g~l~~a~~gil~iDEi~~~---------~~~~~~~L~~~me~~~i~i~k~ 467 (718)
+.... ..+. ....|.. ....+.+..+.++++||||++.+ +...+..|+..|+++
T Consensus 103 ~~~~~----~~l~-----~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~------- 166 (309)
T 3syl_A 103 VSVTR----DDLV-----GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN------- 166 (309)
T ss_dssp EEECG----GGTC-----CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-------
T ss_pred EEEcH----HHhh-----hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-------
Confidence 11100 0010 0001100 01123344457899999999977 788889999999864
Q ss_pred CeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCC
Q 005024 468 GITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFT 547 (718)
Q Consensus 468 g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~ 547 (718)
+.++.+|+++|+..- ..-..++++|.+||+..+.+ +.
T Consensus 167 ------~~~~~~i~~~~~~~~--------~~~~~~~~~l~~R~~~~i~~-~~---------------------------- 203 (309)
T 3syl_A 167 ------RDDLVVILAGYADRM--------ENFFQSNPGFRSRIAHHIEF-PD---------------------------- 203 (309)
T ss_dssp ------TTTCEEEEEECHHHH--------HHHHHHSTTHHHHEEEEEEE-CC----------------------------
T ss_pred ------CCCEEEEEeCChHHH--------HHHHhhCHHHHHhCCeEEEc-CC----------------------------
Confidence 357889999987520 00013579999999876654 33
Q ss_pred CCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhc----CCCCcc
Q 005024 548 PLEPAILRAYISAA-RRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLR----FSETVA 622 (718)
Q Consensus 548 ~~~~~~l~~~i~~~-~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~----~~~~V~ 622 (718)
++.+.+..++... ......+++++.+.+..+....+. ..|++++|.+.++++.+...+..+ ....++
T Consensus 204 -~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~ 275 (309)
T 3syl_A 204 -YSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRN-------QPHFANARSIRNALDRARLRQANRLFTASSGPLD 275 (309)
T ss_dssp -CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTT-------SSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEE
T ss_pred -cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc-------CCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 3444444444332 223446899999999888765543 269999999999999777544332 335666
Q ss_pred HHHHH
Q 005024 623 QSDVD 627 (718)
Q Consensus 623 ~~dv~ 627 (718)
.+|+.
T Consensus 276 ~~~l~ 280 (309)
T 3syl_A 276 ARALS 280 (309)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 24
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.1e-15 Score=163.11 Aligned_cols=189 Identities=17% Similarity=0.162 Sum_probs=120.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCC---CCCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS---SGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
.|||+||||||||++|+++|..+...++...... ...|-+...++..+.- + ......|+||||+|.+..
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~-----A---r~~aP~IIfiDEiDai~~ 289 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKV-----A---GENAPSIVFIDEIDAIGT 289 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHH-----H---HHTCSEEEEEEEESSSSC
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHH-----H---HhcCCcEEEEehhhhhcc
Confidence 7999999999999999999999877766521110 0011111111110000 0 001246999999998732
Q ss_pred -----------HHH---HHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccc
Q 005024 448 -----------SDR---TAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFD 511 (718)
Q Consensus 448 -----------~~~---~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfd 511 (718)
..+ ..|+..|+. . .-..++.||||||... .|++||++ |||
T Consensus 290 ~R~~~~~~~~~~~~~~l~~LL~~lDg---------~--~~~~~ViVIaATNrpd-------------~LDpALlRpGRfD 345 (437)
T 4b4t_I 290 KRYDSNSGGEREIQRTMLELLNQLDG---------F--DDRGDVKVIMATNKIE-------------TLDPALIRPGRID 345 (437)
T ss_dssp CCSCSSCSSCCHHHHHHHHHHHHHHH---------C--CCSSSEEEEEEESCST-------------TCCTTSSCTTTEE
T ss_pred cCCCCCCCccHHHHHHHHHHHHHhhC---------c--CCCCCEEEEEeCCChh-------------hcCHHHhcCCcee
Confidence 122 234444431 1 1134688999999887 89999998 999
Q ss_pred eEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHhhHhhhhc
Q 005024 512 LLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRE-LEEYIAAAYSNIRQEEAKS 590 (718)
Q Consensus 512 li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~-~~~~l~~~y~~lr~~~~~~ 590 (718)
..+. .+.|+.....+|.+..+... .++++ -.+.|+..
T Consensus 346 ~~I~-v~lPd~~~R~~Il~~~l~~~------------------------------~l~~dvdl~~LA~~----------- 383 (437)
T 4b4t_I 346 RKIL-FENPDLSTKKKILGIHTSKM------------------------------NLSEDVNLETLVTT----------- 383 (437)
T ss_dssp EEEC-CCCCCHHHHHHHHHHHHTTS------------------------------CBCSCCCHHHHHHH-----------
T ss_pred EEEE-cCCcCHHHHHHHHHHHhcCC------------------------------CCCCcCCHHHHHHh-----------
Confidence 8765 48888877776644332211 11111 12233332
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 591 NTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 591 ~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
....|.+.+.++++-|...|-.+.+..|+.+|+..|+.-+..+
T Consensus 384 ---T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 384 ---KDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp ---CCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 3467889999999999888888888899999999999876554
No 25
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.61 E-value=3.6e-15 Score=160.68 Aligned_cols=140 Identities=14% Similarity=0.186 Sum_probs=99.0
Q ss_pred CCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
.+++||||++.|+++.++.|+..+++....+. ...-+....+|++++.. ....++++|++||..+
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~----ii~t~~~~~~i~~t~~~-----------~~~~l~~~l~sR~~~i 254 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAPVL----IMATNRGITRIRGTSYQ-----------SPHGIPIDLLDRLLIV 254 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCCEE----EEEESCSEEECBTSSCE-----------EETTCCHHHHTTEEEE
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCCee----eeecccceeeeeccCCC-----------CcccCCHHHHhhccEE
Confidence 36999999999999999999999986421110 00001112233333211 0016899999999764
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCC
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNT 592 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~ 592 (718)
. +++++.+.+..++.... .....+++++.+.+.++.
T Consensus 255 -~------------------------------~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~------------ 291 (368)
T 3uk6_A 255 -S------------------------------TTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIG------------ 291 (368)
T ss_dssp -E------------------------------ECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH------------
T ss_pred -E------------------------------ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh------------
Confidence 2 24455566666665433 344579999999998863
Q ss_pred CCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 593 PHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 593 ~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
+++++|.+.++++.|...|..+++..|+.+||.+|+..+
T Consensus 292 --~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 292 --LETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp --HHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred --cCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 459999999999999999999999999999999999864
No 26
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=1.6e-14 Score=154.48 Aligned_cols=279 Identities=13% Similarity=0.113 Sum_probs=168.7
Q ss_pred cCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC------ceeecCCCCCCC
Q 005024 334 LAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR------GVYTTGRGSSGV 407 (718)
Q Consensus 334 i~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~------~~~~~~~~~~~~ 407 (718)
-..+++|++.++..+...+.++... |+||+||||||||++++++++.+.. .+..... +...
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~-~~~~ 101 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLP------------HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA-SDER 101 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCC------------CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS-SSCC
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCC------------EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc-cccc
Confidence 3457999999999998888776422 7999999999999999999987531 1111100 0000
Q ss_pred cceeeEeecccccceee---------ecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 408 GLTAAVQRDNVTNEMVL---------EGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 408 ~l~~~~~~~~~~g~~~~---------~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
+. ...++.. ..+.. ..+....++.++++|||++.+++..+.+|++.|++. +.++.
T Consensus 102 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-------------~~~~~ 165 (353)
T 1sxj_D 102 GI--SIVREKV-KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-------------SGVTR 165 (353)
T ss_dssp CH--HHHTTHH-HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEE
T ss_pred ch--HHHHHHH-HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-------------CCCce
Confidence 00 0000000 00000 000111234569999999999999999999999863 23566
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYI 558 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i 558 (718)
+|.++|... .+.+++.+||..+. +.+++.+.+..++
T Consensus 166 ~il~~~~~~-------------~l~~~l~sR~~~i~-------------------------------~~~~~~~~~~~~l 201 (353)
T 1sxj_D 166 FCLICNYVT-------------RIIDPLASQCSKFR-------------------------------FKALDASNAIDRL 201 (353)
T ss_dssp EEEEESCGG-------------GSCHHHHHHSEEEE-------------------------------CCCCCHHHHHHHH
T ss_pred EEEEeCchh-------------hCcchhhccCceEE-------------------------------eCCCCHHHHHHHH
Confidence 777888664 68899999996332 4556666777777
Q ss_pred HHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHhhh
Q 005024 559 SAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSE-TVAQSDVDEALRLMQMS 636 (718)
Q Consensus 559 ~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~-~V~~~dv~~ai~l~~~~ 636 (718)
..... ....+++++.+.|.++ ..+++|.+.++++.+...+.-.+.. .|+.+||.+++......
T Consensus 202 ~~~~~~~~~~i~~~~l~~l~~~---------------~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~~~~~ 266 (353)
T 1sxj_D 202 RFISEQENVKCDDGVLERILDI---------------SAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHD 266 (353)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHH---------------TSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCCSH
T ss_pred HHHHHHhCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCCCCHH
Confidence 65433 3346899999998885 3489999999998877766433323 79999999876521111
Q ss_pred cc-cccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCeE
Q 005024 637 KF-SLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWISR-KGYSEAQLKECLEEYAALNVW 704 (718)
Q Consensus 637 ~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~l~~l~~~g~i 704 (718)
.. .+.+... . ......+..+.++.........-+..+.+.+.. .+++..++.+.++.+.+...-
T Consensus 267 ~~~~l~~~~~---~-~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (353)
T 1sxj_D 267 ILIEIVEKVK---S-GDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSR 332 (353)
T ss_dssp HHHHHHHHHH---S-CCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---c-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 00 0000000 0 011233444555443322221223444444443 378888888888877665443
No 27
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.59 E-value=2.4e-15 Score=177.32 Aligned_cols=226 Identities=12% Similarity=0.106 Sum_probs=136.5
Q ss_pred HhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC---ceee--cCCCCC
Q 005024 331 ARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR---GVYT--TGRGSS 405 (718)
Q Consensus 331 ~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~---~~~~--~~~~~~ 405 (718)
.+.+...++|++.++..+..++........ . ..+..-++||+||||||||++|+++++.+.+ .+.. ++....
T Consensus 486 ~~~l~~~viGq~~a~~~l~~~i~~~~~~~~-~--~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 486 ENILHSRVIGQDEAVVAVAKAVRRARAGLK-D--PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTTCS-C--TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred HHHHhCcCcChHHHHHHHHHHHHHHHcccC-C--CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 344556899999998887766642210000 0 0111127999999999999999999998722 1211 111110
Q ss_pred CCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCC
Q 005024 406 GVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANP 485 (718)
Q Consensus 406 ~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np 485 (718)
. ...+ .|.+ .+++..+.++|+||||+++++++.++.|+++|+++.++.. +.......++.+|+|+|.
T Consensus 563 ~--~~~~------~~~l---~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~--~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 563 K--HSTS------GGQL---TEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDS--KGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp S--CCCC---------C---HHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESS
T ss_pred c--cccc------cchh---hHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcC--CCCEeccCCeEEEEeCCC
Confidence 0 0000 0100 1122234678999999999999999999999999988765 334445578999999997
Q ss_pred CCCCCCCCCCcch--hcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-
Q 005024 486 AWGRYDLRRTPAE--NINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR- 562 (718)
Q Consensus 486 ~~g~~~~~~~~~~--~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~- 562 (718)
.....+ .+.+ .-.++++|++|||.++.+ .+++.+.-..|+.+.+ .++.....
T Consensus 630 ~~~~~~---~~~~~~~~~f~p~l~~Rl~~~i~~-~~l~~~~~~~i~~~~l---------------------~~~~~~~~~ 684 (758)
T 3pxi_A 630 GASEKD---KVMGELKRAFRPEFINRIDEIIVF-HSLEKKHLTEIVSLMS---------------------DQLTKRLKE 684 (758)
T ss_dssp STTCCH---HHHHHHHHHSCHHHHTTSSEEEEC-C--CHHHHHHHHHHHH---------------------HHHHHHHHT
T ss_pred ChhhHH---HHHHHHHhhCCHHHHhhCCeEEec-CCCCHHHHHHHHHHHH---------------------HHHHHHHHh
Confidence 542110 0000 013889999999986554 5555555555544432 22222222
Q ss_pred -hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHH
Q 005024 563 -RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRIS 609 (718)
Q Consensus 563 -~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla 609 (718)
.....+++++.++|.+. ...|++++|.|+++|+.+
T Consensus 685 ~~~~~~~~~~a~~~l~~~------------~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 685 QDLSIELTDAAKAKVAEE------------GVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp TTCEEEECHHHHHHHHGG------------GCCTTTTTTTHHHHHHHH
T ss_pred CCCeEEECHHHHHHHHHh------------CCCCCCCChHHHHHHHHH
Confidence 12346899999999763 116999999999999744
No 28
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=1e-14 Score=172.14 Aligned_cols=237 Identities=15% Similarity=0.162 Sum_probs=148.0
Q ss_pred HHHHHhhcCCcccccHHHHHHHHHHHh----CCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee--c
Q 005024 327 YNKLARSLAPEIYGHEDIKKALLLLLV----GAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT--T 400 (718)
Q Consensus 327 ~~~l~~si~p~i~g~~~~k~~i~~~l~----~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~--~ 400 (718)
+..+.+.+...++|++.++..+..++. |...+. +..-++||+||||||||++|+++++.++..++. +
T Consensus 449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~-------~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~ 521 (758)
T 1r6b_X 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEH-------KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_dssp HHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTT-------SCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCC-------CCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEec
Confidence 455667788899999998877665443 222111 112289999999999999999999998655443 2
Q ss_pred CCCCC---CCcceeeEeecccccc--eeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 401 GRGSS---GVGLTAAVQRDNVTNE--MVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 401 ~~~~~---~~~l~~~~~~~~~~g~--~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
+.... ...+.+... .+.|. ...-.+++..++++|+||||+++++++.++.|+++|+++.++.. .|....+ .
T Consensus 522 s~~~~~~~~~~l~g~~~--g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~ 597 (758)
T 1r6b_X 522 SEYMERHTVSRLIGAPP--GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN-NGRKADF-R 597 (758)
T ss_dssp GGCSSSSCCSSSCCCCS--CSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TTEEEEC-T
T ss_pred hhhcchhhHhhhcCCCC--CCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcC-CCCEEec-C
Confidence 11111 111211110 01110 00012334456789999999999999999999999999998874 3555555 6
Q ss_pred ceEEEEEeCCCCCC-------CCC---CCCcchhc--CCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCC
Q 005024 476 RTAVLSAANPAWGR-------YDL---RRTPAENI--NLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPA 543 (718)
Q Consensus 476 ~~~viaa~Np~~g~-------~~~---~~~~~~~~--~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~ 543 (718)
++.||+|+|+.... |.. ...+.+.+ .++++|++|||.++. .++++.+....|+.+.+.
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~-~~~l~~~~~~~i~~~~l~--------- 667 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIW-FDHLSTDVIHQVVDKFIV--------- 667 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEE-CCCCCHHHHHHHHHHHHH---------
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCccee-eCCCCHHHHHHHHHHHHH---------
Confidence 89999999985311 100 01111111 689999999998854 456666555555444322
Q ss_pred CCCCCCCHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccC--HHHHHHHHHHHH
Q 005024 544 LGFTPLEPAILRAYISAAR--RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTT--VRTLLSILRISA 610 (718)
Q Consensus 544 ~~~~~~~~~~l~~~i~~~~--~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s--~R~l~~lirla~ 610 (718)
++..... .....+++++.++|.++. |+++ +|.|.++++.+.
T Consensus 668 ------------~~~~~~~~~~~~~~~~~~a~~~l~~~~--------------~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 668 ------------ELQVQLDQKGVSLEVSQEARNWLAEKG--------------YDRAMGARPMARVIQDNL 712 (758)
T ss_dssp ------------HHHHHHHHTTEEEEECHHHHHHHHHHH--------------CBTTTBTTTHHHHHHHHH
T ss_pred ------------HHHHHHHHCCcEEEeCHHHHHHHHHhC--------------CCcCCCchHHHHHHHHHH
Confidence 2111111 123468999999998863 5544 899999887543
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=4.4e-15 Score=154.09 Aligned_cols=226 Identities=19% Similarity=0.187 Sum_probs=134.3
Q ss_pred cccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
+|+|++.+++.|...+..... +........+..-++||+||||||||++|++++..+...++..... .+...
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~----~~~~~--- 90 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGS----ELVKK--- 90 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGG----GGCCC---
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehH----HHHHh---
Confidence 577888887777654422100 0000000011122899999999999999999999987654432110 01000
Q ss_pred ccccccee-eecceEe---eecCCeeeecccccC-----------ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEE
Q 005024 416 DNVTNEMV-LEGGALV---LADMGICAIDEFDKM-----------DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVL 480 (718)
Q Consensus 416 ~~~~g~~~-~~~g~l~---~a~~gil~iDEi~~~-----------~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~vi 480 (718)
..|... .....+. ....+++||||++.+ ....+..|...++... +. ..+.++.||
T Consensus 91 --~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~~~vI 160 (285)
T 3h4m_A 91 --FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD------GF--DARGDVKII 160 (285)
T ss_dssp --STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH------TT--CSSSSEEEE
T ss_pred --ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEE
Confidence 011000 0000011 113469999999987 4455666666664310 10 123478899
Q ss_pred EEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 005024 481 SAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYI 558 (718)
Q Consensus 481 aa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i 558 (718)
+|+|+.. .+++++++ ||+..+.+ +.|+.+....|.++.+.
T Consensus 161 ~ttn~~~-------------~l~~~l~~~~Rf~~~i~~-~~p~~~~r~~il~~~~~------------------------ 202 (285)
T 3h4m_A 161 GATNRPD-------------ILDPAILRPGRFDRIIEV-PAPDEKGRLEILKIHTR------------------------ 202 (285)
T ss_dssp EECSCGG-------------GBCHHHHSTTSEEEEEEC-CCCCHHHHHHHHHHHHT------------------------
T ss_pred EeCCCch-------------hcCHHHcCCCcCCeEEEE-CCCCHHHHHHHHHHHHh------------------------
Confidence 9999875 78999999 99886554 56665555444333221
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 559 SAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 559 ~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
.. +.-++...+.+... ....++|.+..+++.|...|..++++.|+.+|+.+|+.-+...
T Consensus 203 ----~~-~~~~~~~~~~l~~~--------------~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 203 ----KM-NLAEDVNLEEIAKM--------------TEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp ----TS-CBCTTCCHHHHHHH--------------CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred ----cC-CCCCcCCHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 11 11111122333332 2356889999999999999999999999999999999877654
No 30
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.57 E-value=2.9e-14 Score=154.32 Aligned_cols=300 Identities=16% Similarity=0.123 Sum_probs=177.0
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHC---------CCce-eec-CCC
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVA---------PRGV-YTT-GRG 403 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~---------~~~~-~~~-~~~ 403 (718)
.+.++|++.....+...+........+ -+++|+||||||||++++.+++.+ +..+ +.. ...
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~--------~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKP--------SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCC--------CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCC--------CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 357899999888887666321100011 189999999999999999999876 2222 111 111
Q ss_pred CCCCcceeeEee-----cccccc---eeeecceEeeecCC---eeeecccccCChH--HHHHHHHhhcccEEEEeeCCeE
Q 005024 404 SSGVGLTAAVQR-----DNVTNE---MVLEGGALVLADMG---ICAIDEFDKMDES--DRTAIHEVMEQQTVSIAKAGIT 470 (718)
Q Consensus 404 ~~~~~l~~~~~~-----~~~~g~---~~~~~g~l~~a~~g---il~iDEi~~~~~~--~~~~L~~~me~~~i~i~k~g~~ 470 (718)
.+...+...... .+..|. ..+..-.-.+...| +++|||++.+... .+..|..+++... ..
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~------~~- 162 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQ------EL- 162 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGG------CC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchh------hc-
Confidence 110000000000 000010 00000000011223 9999999999776 6666666554210 00
Q ss_pred EEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCC
Q 005024 471 TSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLE 550 (718)
Q Consensus 471 ~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 550 (718)
..+.++.+|+++|...-.. .+.+++.+||....+ .+++++
T Consensus 163 -~~~~~~~~I~~t~~~~~~~----------~l~~~l~~r~~~~~i-----------------------------~l~~l~ 202 (387)
T 2v1u_A 163 -GDRVWVSLVGITNSLGFVE----------NLEPRVKSSLGEVEL-----------------------------VFPPYT 202 (387)
T ss_dssp ------CEEEEECSCSTTSS----------SSCHHHHTTTTSEEC-----------------------------CBCCCC
T ss_pred -CCCceEEEEEEECCCchHh----------hhCHHHHhcCCCeEE-----------------------------eeCCCC
Confidence 0035778999999763212 678999999965222 355667
Q ss_pred HHHHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 005024 551 PAILRAYISAARR--L-SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVD 627 (718)
Q Consensus 551 ~~~l~~~i~~~~~--~-~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 627 (718)
.+.+..++...-. . ...+++++.+.+.++.. ..+|++|.+.++++.|...|..+++..|+.+|+.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAA------------REHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH------------SSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH------------HhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 7777777765422 2 34688999988888641 1369999999999999999988888899999999
Q ss_pred HHHHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHH----HHHcC---CCHHHHHHHHHHHHh
Q 005024 628 EALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNW----ISRKG---YSEAQLKECLEEYAA 700 (718)
Q Consensus 628 ~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~----~~~~g---~~~~~~~~~l~~l~~ 700 (718)
.|+..+....... ..... ......++.++..+.. +...++.+++++. +...| .+...+.+.++.|..
T Consensus 271 ~a~~~~~~~~~~~--~~~~l--~~~~~~~l~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 344 (387)
T 2v1u_A 271 SARAEIERDRVSE--VVRTL--PLHAKLVLLSIMMLED--GGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDM 344 (387)
T ss_dssp HHHHHHHHHHHHH--HHHSS--CHHHHHHHHHHHHHSS--SSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhchHHH--HHHcC--CHHHHHHHHHHHHHhc--CCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Confidence 9988764432100 00000 1112234444443322 3335667766555 33344 456899999999999
Q ss_pred cCeEEEe
Q 005024 701 LNVWQIH 707 (718)
Q Consensus 701 ~g~i~~~ 707 (718)
.|++...
T Consensus 345 ~gli~~~ 351 (387)
T 2v1u_A 345 LGIVKSR 351 (387)
T ss_dssp TTSEEEE
T ss_pred CCCeEEE
Confidence 9999985
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.57 E-value=3.5e-14 Score=157.24 Aligned_cols=142 Identities=19% Similarity=0.196 Sum_probs=104.1
Q ss_pred CeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEE
Q 005024 435 GICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLW 514 (718)
Q Consensus 435 gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~ 514 (718)
+|+||||+++|+.+.+++|+..||+. +..+ +|.++|+..+.-.....+.....++++++|||-.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~-------------~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~- 361 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESS-------------IAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMII- 361 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTST-------------TCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEE-
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcc-------------CCCE-EEEecCCccccccccccccccccCChhHHhhccee-
Confidence 79999999999999999999999964 2233 33334542000000000111227999999999553
Q ss_pred EeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhhHhhhhcCCC
Q 005024 515 LILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVPRELEEYIAAAYSNIRQEEAKSNTP 593 (718)
Q Consensus 515 ~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~ 593 (718)
. +.+++.+++.+++..... ....+++++.+.+..+.
T Consensus 362 ~------------------------------~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a------------- 398 (456)
T 2c9o_A 362 R------------------------------TMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIG------------- 398 (456)
T ss_dssp E------------------------------CCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH-------------
T ss_pred e------------------------------CCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-------------
Confidence 2 566788888888876543 34468999999988852
Q ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 594 HSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 594 ~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
..+++|.+..+++.|.++|.++++..|+.+||.+|+.++..
T Consensus 399 -~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 399 -TKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp -HHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred -cCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 15799999999999999999999999999999999988643
No 32
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2e-15 Score=163.29 Aligned_cols=189 Identities=19% Similarity=0.139 Sum_probs=120.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCC---CCCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS---SGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
.|||+||||||||++|+++|..+...++...... ...|-+...++..+.- + ......|+||||+|.+..
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~-----A---~~~aP~IifiDEiDal~~ 288 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFAL-----A---KEKAPTIIFIDELDAIGT 288 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHH-----H---HHHCSEEEEEECTHHHHC
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHH-----H---HhcCCeEEeecchhhhhh
Confidence 7999999999999999999999877765521110 0111111111110000 0 001346999999997511
Q ss_pred -----------HH---HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccc
Q 005024 448 -----------SD---RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFD 511 (718)
Q Consensus 448 -----------~~---~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfd 511 (718)
.. ...|+..|+. .. -..++.||||||.+. .|++||++ |||
T Consensus 289 ~R~~~~~~~~~~~~~~~~~lL~~ldg---------~~--~~~~ViVIaaTNrp~-------------~LD~AllRpGRfD 344 (434)
T 4b4t_M 289 KRFDSEKSGDREVQRTMLELLNQLDG---------FS--SDDRVKVLAATNRVD-------------VLDPALLRSGRLD 344 (434)
T ss_dssp CCSSGGGGTTHHHHHHHHHHHHHHTT---------SC--SSCSSEEEEECSSCC-------------CCCTTTCSTTSEE
T ss_pred ccCCCCCCCchHHHHHHHHHHHHhhc---------cC--CCCCEEEEEeCCCch-------------hcCHhHhcCCcee
Confidence 11 2345556642 11 134688999999887 89999999 999
Q ss_pred eEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcC
Q 005024 512 LLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSN 591 (718)
Q Consensus 512 li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~ 591 (718)
..+.+ +.|+.....+|.+..+... ...+.++ .+.|+..
T Consensus 345 ~~I~i-~lPd~~~R~~Il~~~~~~~--------------------------~~~~dvd---l~~lA~~------------ 382 (434)
T 4b4t_M 345 RKIEF-PLPSEDSRAQILQIHSRKM--------------------------TTDDDIN---WQELARS------------ 382 (434)
T ss_dssp EEEEC-CCCCHHHHHHHHHHHHHHS--------------------------CBCSCCC---HHHHHHH------------
T ss_pred EEEEe-CCcCHHHHHHHHHHHhcCC--------------------------CCCCcCC---HHHHHHh------------
Confidence 88765 7888877766644322211 0111111 2233332
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 592 TPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 592 ~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
..+.|.+.+.++++-|...|-.+++..|+.+|+.+|+.-+..
T Consensus 383 --t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 383 --TDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp --CSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSS
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 345788999999999988887788899999999999976544
No 33
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1e-14 Score=157.56 Aligned_cols=187 Identities=20% Similarity=0.184 Sum_probs=118.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCC---CCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRG---SSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
.+||+||||||||++|+++|..+...++..... +...|-+...++..+... ......|+||||+|.+..
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A--------~~~aP~IifiDEiD~i~~ 279 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA--------RENAPSIIFIDEVDSIAT 279 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHH--------HHTCSEEEEEECTHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHH--------HHcCCCeeechhhhhhhc
Confidence 699999999999999999999988776652111 111111111111111000 001246999999986411
Q ss_pred -----------H---HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccc
Q 005024 448 -----------S---DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFD 511 (718)
Q Consensus 448 -----------~---~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfd 511 (718)
. ..+.|+..|+. .. -..++.||||||... .|++||++ |||
T Consensus 280 ~R~~~~~~~~~~~~r~l~~lL~~ldg---------~~--~~~~v~vI~aTN~~~-------------~LD~AllRpGRfd 335 (428)
T 4b4t_K 280 KRFDAQTGSDREVQRILIELLTQMDG---------FD--QSTNVKVIMATNRAD-------------TLDPALLRPGRLD 335 (428)
T ss_dssp SCSSSCSCCCCHHHHHHHHHHHHHHH---------SC--SSCSEEEEEEESCSS-------------SCCHHHHSSSSEE
T ss_pred cccCCCCCCChHHHHHHHHHHHHhhC---------CC--CCCCEEEEEecCChh-------------hcChhhhcCCcce
Confidence 1 23445556642 11 124678999999887 89999998 999
Q ss_pred eEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcC
Q 005024 512 LLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSN 591 (718)
Q Consensus 512 li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~ 591 (718)
..+.+.+.|+......|.+..+... ...+.+ -.+.|+..
T Consensus 336 ~~I~~p~lPd~~~R~~Il~~~~~~~--------------------------~l~~~~---dl~~lA~~------------ 374 (428)
T 4b4t_K 336 RKIEFPSLRDRRERRLIFGTIASKM--------------------------SLAPEA---DLDSLIIR------------ 374 (428)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHSS--------------------------CBCTTC---CHHHHHHH------------
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCC--------------------------CCCccc---CHHHHHHH------------
Confidence 8876656777776666544332211 011111 12333332
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 592 TPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 592 ~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
..+.|.+.+.++++-|...|-.+.+..|+.+|+.+|+.-
T Consensus 375 --t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 375 --NDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp --TTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 245788999999999988888888899999999999864
No 34
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=155.58 Aligned_cols=223 Identities=17% Similarity=0.201 Sum_probs=127.6
Q ss_pred cccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
+|+|++.+++.|...+..... .....+.. ....++||+||||||||++|++++..+...++..... .+......
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~----~l~~~~~g 190 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA----SLTSKYVG 190 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC----CC------
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH----Hhhccccc
Confidence 789999999888766632110 00000110 1123899999999999999999999987665543221 11111100
Q ss_pred cccccceeeecceEe---eecCCeeeecccccC-----------ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEE
Q 005024 416 DNVTNEMVLEGGALV---LADMGICAIDEFDKM-----------DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLS 481 (718)
Q Consensus 416 ~~~~g~~~~~~g~l~---~a~~gil~iDEi~~~-----------~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~via 481 (718)
.. .. .....+. ....+|+||||||.+ ....+..|+..|+. .....+.++.||+
T Consensus 191 ~~-~~---~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 191 EG-EK---LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG---------VQSAGDDRVLVMG 257 (389)
T ss_dssp -C-HH---HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH---------HC-----CEEEEE
T ss_pred hH-HH---HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc---------ccccCCCCEEEEE
Confidence 00 00 0001111 123479999999988 33445667777762 2223346789999
Q ss_pred EeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHH
Q 005024 482 AANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAA 561 (718)
Q Consensus 482 a~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 561 (718)
|+|+.. .+++++++||+..+. .+.|+.+....+..+++..
T Consensus 258 atn~~~-------------~l~~~l~~R~~~~i~-i~~p~~~~r~~il~~~~~~-------------------------- 297 (389)
T 3vfd_A 258 ATNRPQ-------------ELDEAVLRRFIKRVY-VSLPNEETRLLLLKNLLCK-------------------------- 297 (389)
T ss_dssp EESCGG-------------GCCHHHHTTCCEEEE-CCCCCHHHHHHHHHHHHTT--------------------------
T ss_pred ecCCch-------------hcCHHHHcCcceEEE-cCCcCHHHHHHHHHHHHHh--------------------------
Confidence 999875 789999999986544 3666666555554443321
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhc------------CCCCccHHHHHHH
Q 005024 562 RRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLR------------FSETVAQSDVDEA 629 (718)
Q Consensus 562 ~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~------------~~~~V~~~dv~~a 629 (718)
....++++..+.|... ....+.+.+..+++.|...|..+ ....|+.+|+..|
T Consensus 298 --~~~~l~~~~~~~la~~--------------~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~a 361 (389)
T 3vfd_A 298 --QGSPLTQKELAQLARM--------------TDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTES 361 (389)
T ss_dssp --SCCCSCHHHHHHHHHH--------------TTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHH
T ss_pred --cCCCCCHHHHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHH
Confidence 1223455555444443 13345566666666555444332 2346888898888
Q ss_pred HHHH
Q 005024 630 LRLM 633 (718)
Q Consensus 630 i~l~ 633 (718)
+..+
T Consensus 362 l~~~ 365 (389)
T 3vfd_A 362 LKKI 365 (389)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 7643
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.56 E-value=2.4e-14 Score=142.03 Aligned_cols=202 Identities=16% Similarity=0.201 Sum_probs=134.2
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc-----eeecCCCCCCCcce
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG-----VYTTGRGSSGVGLT 410 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~-----~~~~~~~~~~~~l~ 410 (718)
.+++|++..+..+...+..+... ++||+||||||||++++.+++.+... .+..... ...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~- 82 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIP------------HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS-DERGI- 82 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCC------------CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT-CTTCH-
T ss_pred HHHcCcHHHHHHHHHHHhCCCCC------------eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc-cccCh-
Confidence 46889999998888877665321 79999999999999999999875211 1110000 00000
Q ss_pred eeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCC
Q 005024 411 AAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRY 490 (718)
Q Consensus 411 ~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~ 490 (718)
....... ..+ ........+.+++++|||++.+++..+..|++.+++. +.++.+|+++|...
T Consensus 83 -~~~~~~~-~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~--- 143 (226)
T 2chg_A 83 -DVVRHKI-KEF-ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVS--- 143 (226)
T ss_dssp -HHHHHHH-HHH-HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG---
T ss_pred -HHHHHHH-HHH-hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh---
Confidence 0000000 000 0000111235679999999999999999999999753 34678888998764
Q ss_pred CCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCC
Q 005024 491 DLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCVP 569 (718)
Q Consensus 491 ~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~ls 569 (718)
.+.+++.+||..+. +.+++.+.+.+++.... .....++
T Consensus 144 ----------~~~~~l~~r~~~i~-------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (226)
T 2chg_A 144 ----------RIIEPIQSRCAVFR-------------------------------FKPVPKEAMKKRLLEICEKEGVKIT 182 (226)
T ss_dssp ----------GSCHHHHTTSEEEE-------------------------------CCCCCHHHHHHHHHHHHHHHTCCBC
T ss_pred ----------hcCHHHHHhCceee-------------------------------cCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 67899999997332 34556666666665433 2344588
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 570 RELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 570 ~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+++.+.+... +++++|.+.++++.+...+ +.|+.+||.+|+.
T Consensus 183 ~~~~~~l~~~---------------~~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 183 EDGLEALIYI---------------SGGDFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHH---------------HTTCHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHHHHHHHH---------------cCCCHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 9888888764 5889999999988665443 6899999999875
No 36
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.56 E-value=3e-14 Score=145.53 Aligned_cols=220 Identities=19% Similarity=0.182 Sum_probs=130.9
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~~~ 414 (718)
.+|+|++.+|+.+...+..-...........+...++||+||||||||++|++++..++..++. .+..... .+.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~-~~~~--- 87 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-MFVG--- 87 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT-SCCC---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH-Hhhh---
Confidence 4688988888876543211000000011111222379999999999999999999987654433 2211110 0000
Q ss_pred ecccccceeeecceEeee---cCCeeeecccccCChH--------------HHHHHHHhhcccEEEEeeCCeEEEecCce
Q 005024 415 RDNVTNEMVLEGGALVLA---DMGICAIDEFDKMDES--------------DRTAIHEVMEQQTVSIAKAGITTSLNART 477 (718)
Q Consensus 415 ~~~~~g~~~~~~g~l~~a---~~gil~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~ 477 (718)
. +...+ ...+..+ ..+++||||++.+... ....++..|+.- .-+.++
T Consensus 88 -~---~~~~~-~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~ 151 (257)
T 1lv7_A 88 -V---GASRV-RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGI 151 (257)
T ss_dssp -C---CHHHH-HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSCE
T ss_pred -h---hHHHH-HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc-----------ccCCCE
Confidence 0 00000 0111111 2359999999876532 223444445421 113568
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHH
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILR 555 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~ 555 (718)
.||+|+|... .+++++++ |||..+.+ +.|+.+....|.++.+.
T Consensus 152 ~vI~~tn~~~-------------~l~~~l~r~~rf~~~i~i-~~P~~~~r~~il~~~~~--------------------- 196 (257)
T 1lv7_A 152 IVIAATNRPD-------------VLDPALLRPGRFDRQVVV-GLPDVRGREQILKVHMR--------------------- 196 (257)
T ss_dssp EEEEEESCTT-------------TSCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHHT---------------------
T ss_pred EEEEeeCCch-------------hCCHHHcCCCcCCeEEEe-CCCCHHHHHHHHHHHHh---------------------
Confidence 8999999885 68899998 99986543 66776665554333221
Q ss_pred HHHHHHHhcCCCCCHHH-HHHHHHHHHHhhHhhhhcCCCCccc-CHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 556 AYISAARRLSPCVPREL-EEYIAAAYSNIRQEEAKSNTPHSYT-TVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 556 ~~i~~~~~~~p~ls~~~-~~~l~~~y~~lr~~~~~~~~~~~~~-s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
.. .+++++ ...+.. .|++ |+|++.++++.|...|..+....|+.+|+..|+..+
T Consensus 197 -------~~--~l~~~~~~~~la~---------------~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 197 -------RV--PLAPDIDAAIIAR---------------GTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp -------TS--CBCTTCCHHHHHH---------------TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred -------cC--CCCccccHHHHHH---------------HcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 11 122222 223322 4777 999999999999999988888999999999999866
Q ss_pred h
Q 005024 634 Q 634 (718)
Q Consensus 634 ~ 634 (718)
.
T Consensus 253 ~ 253 (257)
T 1lv7_A 253 M 253 (257)
T ss_dssp T
T ss_pred h
Confidence 4
No 37
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.1e-14 Score=156.84 Aligned_cols=189 Identities=19% Similarity=0.141 Sum_probs=119.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCC---CCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCCh
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRG---SSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDE 447 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~ 447 (718)
.|||+||||||||++|+++|..+...++..... +...|-+...++..+... ......|+||||+|.+..
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~A--------r~~aP~IIfiDEiDai~~ 316 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA--------RTKKACIIFFDEIDAVGG 316 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHH--------HHTCSEEEEEECCTTTSB
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHH--------HhcCCceEeecccccccc
Confidence 799999999999999999999987766542111 001111111111100000 011246999999998732
Q ss_pred H-----------H---HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccc
Q 005024 448 S-----------D---RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFD 511 (718)
Q Consensus 448 ~-----------~---~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfd 511 (718)
. . ...++..|+. . .-..++.||||||... .|++||++ |||
T Consensus 317 ~R~~~~~~~~~~~~~~l~~lL~~lDg---------~--~~~~~ViVIaATNrpd-------------~LDpALlRpGRFD 372 (467)
T 4b4t_H 317 ARFDDGAGGDNEVQRTMLELITQLDG---------F--DPRGNIKVMFATNRPN-------------TLDPALLRPGRID 372 (467)
T ss_dssp CCSSSSCGGGGHHHHHHHHHHHHHHS---------S--CCTTTEEEEEECSCTT-------------SBCHHHHSTTTCC
T ss_pred cccCcCCCccHHHHHHHHHHHHHhhc---------c--CCCCcEEEEeCCCCcc-------------cCChhhhcccccc
Confidence 1 1 2334444441 1 1134688999999887 89999998 999
Q ss_pred eEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcC
Q 005024 512 LLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSN 591 (718)
Q Consensus 512 li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~ 591 (718)
..+.+ +.|+.....+|.+..+... ...+.++ .+.|...
T Consensus 373 ~~I~i-~lPd~~~R~~Ilk~~l~~~--------------------------~l~~dvd---l~~LA~~------------ 410 (467)
T 4b4t_H 373 RKVEF-SLPDLEGRANIFRIHSKSM--------------------------SVERGIR---WELISRL------------ 410 (467)
T ss_dssp EEECC-CCCCHHHHHHHHHHHHTTS--------------------------CBCSSCC---HHHHHHH------------
T ss_pred EEEEe-CCcCHHHHHHHHHHHhcCC--------------------------CCCCCCC---HHHHHHH------------
Confidence 88654 7888877766644332211 0111111 2223322
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 592 TPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 592 ~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
....|.+.|.++++-|...|-.+.+..|+.+|+..|+.-+..
T Consensus 411 --T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 411 --CPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp --CCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Confidence 245688999999999988888888899999999999976644
No 38
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.55 E-value=3.5e-15 Score=157.74 Aligned_cols=162 Identities=23% Similarity=0.258 Sum_probs=97.4
Q ss_pred CcccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (718)
.+|+|++.+|+.|..++..... +....+ ..+...++||+||||||||++|+++++.+...++..... .+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~----~l----- 87 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS----DL----- 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH----HH-----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH----HH-----
Confidence 3688999999888766632110 000011 112334899999999999999999999976654432110 00
Q ss_pred eccccccee-eecceEe---eecCCeeeecccccCChH-----------HHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 415 RDNVTNEMV-LEGGALV---LADMGICAIDEFDKMDES-----------DRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 415 ~~~~~g~~~-~~~g~l~---~a~~gil~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
.....|+.. .....+. ....+|+||||+|.+... .+..|+..|+.-. ..+.++.|
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~v 157 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLV 157 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEE
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEE
Confidence 000011000 0000011 123479999999988642 3566666665210 12346889
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhh
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARH 531 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~ 531 (718)
|+|+|... .+++++++||+..+.+ +.|+.+....|.++
T Consensus 158 i~atn~~~-------------~ld~al~~Rf~~~i~~-~~p~~~~r~~il~~ 195 (322)
T 3eie_A 158 LGATNIPW-------------QLDSAIRRRFERRIYI-PLPDLAARTTMFEI 195 (322)
T ss_dssp EEEESCGG-------------GSCHHHHHHCCEEEEC-CCCCHHHHHHHHHH
T ss_pred EEecCChh-------------hCCHHHHcccCeEEEe-CCCCHHHHHHHHHH
Confidence 99999876 7999999999887644 66776666555443
No 39
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.3e-14 Score=155.10 Aligned_cols=189 Identities=17% Similarity=0.145 Sum_probs=120.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeeccccccee-eecceEee---ecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMV-LEGGALVL---ADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~-~~~g~l~~---a~~gil~iDEi~~~~ 446 (718)
.|||+||||||||++|+++|..+...++..... .+. +.+.|+-. .....+.. ....|+||||+|.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s----~l~-----sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS----GIV-----DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG----GTC-----CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSS
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh----hhc-----cccchHHHHHHHHHHHHHHhcCCceeeeecccccc
Confidence 699999999999999999999987766542111 111 01111000 00000111 135699999999863
Q ss_pred hH--------------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--cc
Q 005024 447 ES--------------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RF 510 (718)
Q Consensus 447 ~~--------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rf 510 (718)
.. ....|+..|+. .. -..++.||||||.+. .|++||++ ||
T Consensus 288 ~~R~~~~~~~~~~~~~~l~~lL~~lDg---------~~--~~~~vivI~ATNrp~-------------~LDpAllRpGRf 343 (437)
T 4b4t_L 288 GRRFSEGTSADREIQRTLMELLTQMDG---------FD--NLGQTKIIMATNRPD-------------TLDPALLRPGRL 343 (437)
T ss_dssp CCCSSSCCSSTTHHHHHHHHHHHHHHS---------SS--CTTSSEEEEEESSTT-------------SSCTTTTSTTSE
T ss_pred cccccCCCCcchHHHHHHHHHHHHhhc---------cc--CCCCeEEEEecCCch-------------hhCHHHhCCCcc
Confidence 21 12345666652 11 124678999999887 89999998 59
Q ss_pred ceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhc
Q 005024 511 DLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKS 590 (718)
Q Consensus 511 dli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~ 590 (718)
|..+.+ +.|+......|.+..+... ...+.++ .+.|+..
T Consensus 344 D~~I~i-~lPd~~~R~~Il~~~~~~~--------------------------~~~~d~d---l~~lA~~----------- 382 (437)
T 4b4t_L 344 DRKVEI-PLPNEAGRLEIFKIHTAKV--------------------------KKTGEFD---FEAAVKM----------- 382 (437)
T ss_dssp EEEECC-CCCCHHHHHHHHHHHHHTS--------------------------CBCSCCC---HHHHHHT-----------
T ss_pred ceeeec-CCcCHHHHHHHHHHHhcCC--------------------------CCCcccC---HHHHHHh-----------
Confidence 987654 7888777766644322210 0111111 2223221
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhh
Q 005024 591 NTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMS 636 (718)
Q Consensus 591 ~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~ 636 (718)
....|.+.+.++++-|...|-.+.+..|+.+|+..|+.-+..+
T Consensus 383 ---t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 383 ---SDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp ---CCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 3457889999999999888888888999999999999876543
No 40
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.54 E-value=3.9e-14 Score=151.76 Aligned_cols=165 Identities=19% Similarity=0.192 Sum_probs=98.2
Q ss_pred CcccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (718)
.+|+|++.+++.|...+..... .....+. .+...++||+||||||||++|++++..+...++..... .+..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~----~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS----SLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG----GGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH----Hhhc---
Confidence 3799999999888766542100 0000000 12233899999999999999999999986554432111 1110
Q ss_pred eccccccee-eecceEe---eecCCeeeecccccCCh-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 415 RDNVTNEMV-LEGGALV---LADMGICAIDEFDKMDE-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 415 ~~~~~g~~~-~~~g~l~---~a~~gil~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
...|+.. .....+. ....+++||||++.+.. ..+..|+..|+. .....+.++.|
T Consensus 156 --~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~---------~~~~~~~~v~v 224 (357)
T 3d8b_A 156 --KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG---------ATTSSEDRILV 224 (357)
T ss_dssp --SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEE
T ss_pred --cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc---------ccccCCCCEEE
Confidence 0011000 0000111 12468999999988743 234566666662 22233568899
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhh
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
|+|+|+.. .+++++++||+..+.+ ..|+.+....+..+++
T Consensus 225 I~atn~~~-------------~l~~~l~~Rf~~~i~i-~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 225 VGATNRPQ-------------EIDEAARRRLVKRLYI-PLPEASARKQIVINLM 264 (357)
T ss_dssp EEEESCGG-------------GBCHHHHTTCCEEEEC-CCCCHHHHHHHHHHHH
T ss_pred EEecCChh-------------hCCHHHHhhCceEEEe-CCcCHHHHHHHHHHHH
Confidence 99999875 7899999999865543 6677666666555444
No 41
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=7.9e-14 Score=147.33 Aligned_cols=205 Identities=19% Similarity=0.227 Sum_probs=136.9
Q ss_pred hhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc-----eee-cCCCCC
Q 005024 332 RSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG-----VYT-TGRGSS 405 (718)
Q Consensus 332 ~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~-----~~~-~~~~~~ 405 (718)
..-..+++|++.++..+...+.+|... |+||+||||||||++|+++++.+... +.. .+...
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~- 87 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMP------------HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE- 87 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCC------------EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH-
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCC------------eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc-
Confidence 333457999999999988887766322 89999999999999999999875211 111 10000
Q ss_pred CCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCC
Q 005024 406 GVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANP 485 (718)
Q Consensus 406 ~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np 485 (718)
.+. ...+... ..+ ...+.+..+.+++++|||++.++++.+.+|++.|++. +.++.+|+++|.
T Consensus 88 -~~~--~~~~~~~-~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~ 149 (327)
T 1iqp_A 88 -RGI--NVIREKV-KEF-ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCNY 149 (327)
T ss_dssp -HHH--HTTHHHH-HHH-HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESC
T ss_pred -Cch--HHHHHHH-HHH-HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCC
Confidence 000 0000000 000 0112222245779999999999999999999999853 346678888886
Q ss_pred CCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-c
Q 005024 486 AWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-L 564 (718)
Q Consensus 486 ~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~ 564 (718)
.. .+.+++.+||..+. +.+++.+.+..++..... .
T Consensus 150 ~~-------------~l~~~l~sr~~~~~-------------------------------~~~l~~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 150 SS-------------KIIEPIQSRCAIFR-------------------------------FRPLRDEDIAKRLRYIAENE 185 (327)
T ss_dssp GG-------------GSCHHHHHTEEEEE-------------------------------CCCCCHHHHHHHHHHHHHTT
T ss_pred cc-------------ccCHHHHhhCcEEE-------------------------------ecCCCHHHHHHHHHHHHHhc
Confidence 64 68899999996332 455667777777765433 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 565 SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 565 ~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
...+++++.+.|... +++++|.+.++++.+.. ....|+.++|..+..
T Consensus 186 ~~~~~~~~~~~l~~~---------------~~g~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~~ 232 (327)
T 1iqp_A 186 GLELTEEGLQAILYI---------------AEGDMRRAINILQAAAA-----LDKKITDENVFMVAS 232 (327)
T ss_dssp TCEECHHHHHHHHHH---------------HTTCHHHHHHHHHHHHT-----TCSEECHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHH---------------CCCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHHC
Confidence 335899999988875 47899999999875543 234688888876553
No 42
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=1.8e-13 Score=148.33 Aligned_cols=307 Identities=13% Similarity=0.062 Sum_probs=181.0
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccc--eeeecCCCcchHHHHHHHHHHHCCCc-----eeec-CCCCCCC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDL--HICLMGDPGVAKSQLLKHIINVAPRG-----VYTT-GRGSSGV 407 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i--~vLl~G~pGtGKt~la~~i~~~~~~~-----~~~~-~~~~~~~ 407 (718)
+.++|++.....+...+...... .... +++|+||||||||++++.++..+... ++.. ....+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 57889988777766555431100 0001 69999999999999999999887432 1211 1111100
Q ss_pred cceeeEeec-----ccccce---eeec-ceEeeecC--CeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCc
Q 005024 408 GLTAAVQRD-----NVTNEM---VLEG-GALVLADM--GICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNAR 476 (718)
Q Consensus 408 ~l~~~~~~~-----~~~g~~---~~~~-g~l~~a~~--gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~ 476 (718)
.+....... +..+.. .... .....+.+ -+++|||++.++++.+..|.+++++.. + ....+
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~------~---~~~~~ 159 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD------K---LGAFR 159 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHH------H---HSSCC
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCC------C---CCcCC
Confidence 000000000 000000 0000 00001122 389999999999999999999987521 0 00136
Q ss_pred eEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 005024 477 TAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRA 556 (718)
Q Consensus 477 ~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~ 556 (718)
+.+|+++|...- . -.+.+++.+||....+ .++|++.+.+..
T Consensus 160 ~~iI~~~~~~~~--------~--~~l~~~~~~r~~~~~i-----------------------------~~~pl~~~~~~~ 200 (389)
T 1fnn_A 160 IALVIVGHNDAV--------L--NNLDPSTRGIMGKYVI-----------------------------RFSPYTKDQIFD 200 (389)
T ss_dssp EEEEEEESSTHH--------H--HTSCHHHHHHHTTCEE-----------------------------ECCCCBHHHHHH
T ss_pred EEEEEEECCchH--------H--HHhCHHhhhcCCCceE-----------------------------EeCCCCHHHHHH
Confidence 788888886520 0 0467888888864211 256677777777
Q ss_pred HHHHHHh--c-CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 557 YISAARR--L-SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 557 ~i~~~~~--~-~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
++..... . ...+++++.+.+.++.... .....++|++|.+..+++.|...|..++...|+.+|+..|+...
T Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 201 ILLDRAKAGLAEGSYSEDILQMIADITGAQ------TPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHHBCTTSSCHHHHHHHHHHHSBS------STTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHhhc------ccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 7765432 1 3468999998888763000 00011279999999999999999988888899999999998765
Q ss_pred hhhcccccccccccCccchHHHHHHHHHHHHH-hcCCCcccHHHHHHH----HHHcC---CCHHHHHHHHHHHHhcCeEE
Q 005024 634 QMSKFSLYSDDRQRSGLDAISDIYSILRDEAA-RSNKLDVSYAHALNW----ISRKG---YSEAQLKECLEEYAALNVWQ 705 (718)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~~~~~~~l~~~----~~~~g---~~~~~~~~~l~~l~~~g~i~ 705 (718)
.......... . .......++.++..+.. ..+. .++.+++++. |...| ++..++++.+++|.+.|+|.
T Consensus 275 ~~~~~~~~l~--~--l~~~~~~~L~~l~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~ 349 (389)
T 1fnn_A 275 LFGISEEVLI--G--LPLHEKLFLLAIVRSLKISHTP-YITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVE 349 (389)
T ss_dssp SCCCCHHHHH--H--SCHHHHHHHHHHHHHHHHHCSS-CEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSE
T ss_pred hhhhHHHHHH--c--CCHHHHHHHHHHHHHHhhccCC-CccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 4321110000 0 01122334444444332 2222 5677777665 33334 57799999999999999999
Q ss_pred EeCC
Q 005024 706 IHPH 709 (718)
Q Consensus 706 ~~~~ 709 (718)
....
T Consensus 350 ~~~~ 353 (389)
T 1fnn_A 350 TRQN 353 (389)
T ss_dssp EEEC
T ss_pred Eeee
Confidence 8643
No 43
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=146.25 Aligned_cols=229 Identities=16% Similarity=0.113 Sum_probs=122.1
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEe
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQ 414 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (718)
..+|+|++.+|+.+...+..............+...++||+||||||||++|+++++.+...++........ +
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~-~------ 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFV-E------ 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTS-S------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH-h------
Confidence 357899999988876443211111010011112333899999999999999999999876554432111000 0
Q ss_pred ecccccce-eeecceEeee---cCCeeeecccccCC------------hHHHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 415 RDNVTNEM-VLEGGALVLA---DMGICAIDEFDKMD------------ESDRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 415 ~~~~~g~~-~~~~g~l~~a---~~gil~iDEi~~~~------------~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
...+.. ....+.+..+ .++++||||++.+. ...+..|.++++.- . +. .-+.++.
T Consensus 78 --~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~----~--~~--~~~~~~~ 147 (262)
T 2qz4_A 78 --VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM----D--GM--GTTDHVI 147 (262)
T ss_dssp --SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHH----H--TC--CTTCCEE
T ss_pred --hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh----h--Cc--CCCCCEE
Confidence 000000 0000111111 25799999999983 33344444444320 0 10 1134788
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHH
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRA 556 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~ 556 (718)
+|+|+|... .+++++++ |||..+.+ +.|+.++...+.++.+.
T Consensus 148 vi~~tn~~~-------------~ld~~l~~~~R~~~~i~i-~~p~~~~r~~il~~~~~---------------------- 191 (262)
T 2qz4_A 148 VLASTNRAD-------------ILDGALMRPGRLDRHVFI-DLPTLQERREIFEQHLK---------------------- 191 (262)
T ss_dssp EEEEESCGG-------------GGGSGGGSTTSCCEEEEC-CSCCHHHHHHHHHHHHH----------------------
T ss_pred EEecCCChh-------------hcCHHHhcCCcCCeEEEe-CCcCHHHHHHHHHHHHH----------------------
Confidence 999999875 68899999 99876654 66666655554433322
Q ss_pred HHHHHHhcCCCCCHHH-HHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Q 005024 557 YISAARRLSPCVPREL-EEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQM 635 (718)
Q Consensus 557 ~i~~~~~~~p~ls~~~-~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~ 635 (718)
......+.+. .+.+... ....+.|.+..+++.|...|..+++..|+.+|+..|+..+..
T Consensus 192 ------~~~~~~~~~~~~~~l~~~--------------~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 192 ------SLKLTQSSTFYSQRLAEL--------------TPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp ------HTTCCBTHHHHHHHHHHT--------------CTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHH
T ss_pred ------hCCCCcchhhHHHHHHHH--------------CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcc
Confidence 2211222221 1223221 234567899999999988888888889999999999987655
Q ss_pred h
Q 005024 636 S 636 (718)
Q Consensus 636 ~ 636 (718)
+
T Consensus 252 ~ 252 (262)
T 2qz4_A 252 G 252 (262)
T ss_dssp H
T ss_pred C
Confidence 4
No 44
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.51 E-value=7.6e-14 Score=145.67 Aligned_cols=226 Identities=17% Similarity=0.165 Sum_probs=127.3
Q ss_pred CcccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (718)
.+|+|++.+++.+...+..... +....+.. ...-++||+||||||||++|++++..+...++............+
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~--- 96 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVG--- 96 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccc---
Confidence 3789999999988766543210 00001110 112389999999999999999999998765443211100000000
Q ss_pred eccccccee-eecceEeeecCCeeeecccccCCh-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEE
Q 005024 415 RDNVTNEMV-LEGGALVLADMGICAIDEFDKMDE-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSA 482 (718)
Q Consensus 415 ~~~~~g~~~-~~~g~l~~a~~gil~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa 482 (718)
. .+... ..-........+++||||++.+.. ..+..|+..|+..... ....++.||+|
T Consensus 97 -~--~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~ 165 (297)
T 3b9p_A 97 -D--GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAA 165 (297)
T ss_dssp -C--HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEE
T ss_pred -h--HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEee
Confidence 0 00000 000001123468999999998843 3445566666532111 11245889999
Q ss_pred eCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 005024 483 ANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR 562 (718)
Q Consensus 483 ~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 562 (718)
+|... .+++++++||+..+.+ +.|+.+....+..+.+.
T Consensus 166 tn~~~-------------~l~~~l~~R~~~~i~~-~~p~~~~r~~il~~~~~---------------------------- 203 (297)
T 3b9p_A 166 TNRPQ-------------ELDEAALRRFTKRVYV-SLPDEQTRELLLNRLLQ---------------------------- 203 (297)
T ss_dssp ESCGG-------------GBCHHHHHHCCEEEEC-CCCCHHHHHHHHHHHHG----------------------------
T ss_pred cCChh-------------hCCHHHHhhCCeEEEe-CCcCHHHHHHHHHHHHH----------------------------
Confidence 99875 7899999999866543 56665554444333221
Q ss_pred hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcC------------CCCccHHHHHHHH
Q 005024 563 RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRF------------SETVAQSDVDEAL 630 (718)
Q Consensus 563 ~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~------------~~~V~~~dv~~ai 630 (718)
.....+++++.+.+... ..+.+.+.+..+++.|...|..+. ...|+.+|+..|+
T Consensus 204 ~~~~~~~~~~~~~la~~--------------~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~ 269 (297)
T 3b9p_A 204 KQGSPLDTEALRRLAKI--------------TDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSL 269 (297)
T ss_dssp GGSCCSCHHHHHHHHHH--------------TTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHH
Confidence 12223555555555543 234455677777766655554332 3568999998887
Q ss_pred HH
Q 005024 631 RL 632 (718)
Q Consensus 631 ~l 632 (718)
..
T Consensus 270 ~~ 271 (297)
T 3b9p_A 270 KR 271 (297)
T ss_dssp TS
T ss_pred HH
Confidence 54
No 45
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.51 E-value=7.4e-14 Score=147.02 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=134.1
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC-Cc----e-eecCCCCCCCcc
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP-RG----V-YTTGRGSSGVGL 409 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~-~~----~-~~~~~~~~~~~l 409 (718)
.+++|++.++..+...+..+... |+||+||||||||++++++++.+. .. + ............
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIP------------HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCC------------CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTT
T ss_pred HHHhCCHHHHHHHHHHHhCCCCC------------eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHH
Confidence 36889999988887776654322 799999999999999999998751 10 1 111110000000
Q ss_pred eeeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCC
Q 005024 410 TAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGR 489 (718)
Q Consensus 410 ~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~ 489 (718)
.++.. ..+. ....+..+..++++|||++.++.+.+..|++.|++ .+.++.+|+++|...
T Consensus 85 ----~~~~~-~~~~-~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~-- 143 (319)
T 2chq_A 85 ----VRHKI-KEFA-RTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-------------YSKSCRFILSCNYVS-- 143 (319)
T ss_dssp ----SSHHH-HHHH-HSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-------------SSSSEEEEEEESCGG--
T ss_pred ----HHHHH-HHHH-hcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCChh--
Confidence 00000 0000 00111123467999999999999999999999985 245778899998764
Q ss_pred CCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCC
Q 005024 490 YDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCV 568 (718)
Q Consensus 490 ~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~l 568 (718)
.+.+++.+||..+. +.+++.+.+..++..... ....+
T Consensus 144 -----------~l~~~l~sr~~~i~-------------------------------~~~~~~~~~~~~l~~~~~~~~~~i 181 (319)
T 2chq_A 144 -----------RIIEPIQSRCAVFR-------------------------------FKPVPKEAMKKRLLEICEKEGVKI 181 (319)
T ss_dssp -----------GSCHHHHTTCEEEE-------------------------------CCCCCHHHHHHHHHHHHHTTCCCB
T ss_pred -----------hcchHHHhhCeEEE-------------------------------ecCCCHHHHHHHHHHHHHHcCCCC
Confidence 68899999996332 455666777777765433 34468
Q ss_pred CHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 569 PRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 569 s~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
++++.+.|.. .+++++|.+.++++.+.. ....|+.++|..++.
T Consensus 182 ~~~~l~~l~~---------------~~~G~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 182 TEDGLEALIY---------------ISGGDFRKAINALQGAAA-----IGEVVDADTIYQITA 224 (319)
T ss_dssp CHHHHHHHHH---------------TTTTCHHHHHHHHHHHHH-----SSSCBCHHHHHHHTT
T ss_pred CHHHHHHHHH---------------HcCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHC
Confidence 9999988886 378999999988875432 245799999987654
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.50 E-value=3.8e-14 Score=151.65 Aligned_cols=203 Identities=20% Similarity=0.206 Sum_probs=119.8
Q ss_pred CcccccHHHHHHHHHHHhCCc-cccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGAP-HRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~-~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (718)
.+|+|++.+|+.|..++.... .+....+ ..+..-++||+||||||||++|++++..+...++..... .+...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~----~l~~~-- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS----DLVSK-- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH----HHHSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH----HHhhh--
Confidence 479999999998886653210 0000001 112233799999999999999999999986554432110 01000
Q ss_pred eccccccee-eecceEee---ecCCeeeecccccCChH-----------HHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 415 RDNVTNEMV-LEGGALVL---ADMGICAIDEFDKMDES-----------DRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 415 ~~~~~g~~~-~~~g~l~~---a~~gil~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
..|+.. .....+.. ...+|+||||++.+... .+..|+..|+.-. ..+.++.|
T Consensus 124 ---~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~v 190 (355)
T 2qp9_X 124 ---WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLV 190 (355)
T ss_dssp ---C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEE
T ss_pred ---hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEE
Confidence 001000 00011111 24679999999998743 3566666665210 11346899
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHH
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYIS 559 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~ 559 (718)
|+|+|... .+++++++||+..+.+ +.|+......|.++.+.
T Consensus 191 I~atn~~~-------------~ld~al~rRf~~~i~i-~~P~~~~r~~il~~~l~------------------------- 231 (355)
T 2qp9_X 191 LGATNIPW-------------QLDSAIRRRFERRIYI-PLPDLAARTTMFEINVG------------------------- 231 (355)
T ss_dssp EEEESCGG-------------GSCHHHHHTCCEEEEC-CCCCHHHHHHHHHHHHT-------------------------
T ss_pred EeecCCcc-------------cCCHHHHcccCEEEEe-CCcCHHHHHHHHHHHHh-------------------------
Confidence 99999876 7999999999887654 66666555544333221
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHH
Q 005024 560 AARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALAR 614 (718)
Q Consensus 560 ~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~ 614 (718)
.....+++...+.|... ..+.+.|.+..+++.|...|-
T Consensus 232 ---~~~~~~~~~~l~~la~~--------------t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 232 ---DTPSVLTKEDYRTLGAM--------------TEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp ---TSCBCCCHHHHHHHHHH--------------TTTCCHHHHHHHHHHHHHHHH
T ss_pred ---hCCCCCCHHHHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHH
Confidence 11113566666666653 234578888888887766553
No 47
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=146.01 Aligned_cols=162 Identities=23% Similarity=0.222 Sum_probs=93.5
Q ss_pred CcccccHHHHHHHHHHHhCCc-cccCCCCccccccceeeecCCCcchHHHHHHHHHHHC-CCceeecCCCCCCCcceeeE
Q 005024 336 PEIYGHEDIKKALLLLLVGAP-HRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVA-PRGVYTTGRGSSGVGLTAAV 413 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~-~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~-~~~~~~~~~~~~~~~l~~~~ 413 (718)
.+|.|++.+|+.|...+.... .+....|. .+..-++||+||||||||++|+++++.+ ...++..... .+...
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~----~l~~~- 85 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS----DLVSK- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECC----SSCCS-
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhH----HHHhh-
Confidence 378899999888875543210 00011111 1122379999999999999999999988 4333321110 01100
Q ss_pred eecccccce--eeec--ceEeeecCCeeeecccccCCh-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 414 QRDNVTNEM--VLEG--GALVLADMGICAIDEFDKMDE-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 414 ~~~~~~g~~--~~~~--g~l~~a~~gil~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
..|+. .+.. ........+++||||+|.+.+ ...+.|+..|+.- . .-+.++.
T Consensus 86 ----~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~---------~-~~~~~v~ 151 (322)
T 1xwi_A 86 ----WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV---------G-VDNDGIL 151 (322)
T ss_dssp ----SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCS---------S-SCCTTEE
T ss_pred ----hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcc---------c-ccCCCEE
Confidence 00100 0000 000112457999999998832 2234455555421 0 1135789
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhh
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARH 531 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~ 531 (718)
||+|+|... .+++++++|||..+.+ +.|+.+....|.++
T Consensus 152 vI~atn~~~-------------~ld~al~rRf~~~i~i-~~P~~~~r~~il~~ 190 (322)
T 1xwi_A 152 VLGATNIPW-------------VLDSAIRRRFEKRIYI-PLPEPHARAAMFKL 190 (322)
T ss_dssp EEEEESCTT-------------TSCHHHHHTCCEEEEC-CCCCHHHHHHHHHH
T ss_pred EEEecCCcc-------------cCCHHHHhhcCeEEEe-CCcCHHHHHHHHHH
Confidence 999999886 7999999999876654 66776655555433
No 48
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.48 E-value=1.1e-13 Score=146.30 Aligned_cols=210 Identities=13% Similarity=0.140 Sum_probs=130.7
Q ss_pred cCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE
Q 005024 334 LAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV 413 (718)
Q Consensus 334 i~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~ 413 (718)
-..+++|++.++..+...+..|... . .+|+.||||||||++++++++.+...++....... + ...
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~---~--------~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~--~--~~~ 88 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIP---H--------IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC--K--IDF 88 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCC---S--------EEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC--C--HHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCC---e--------EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc--C--HHH
Confidence 3457899999999988888766422 1 46778889999999999999998654433211110 1 000
Q ss_pred eecccccceeeecceEeeecCCeeeecccccCC-hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCC
Q 005024 414 QRDNVTNEMVLEGGALVLADMGICAIDEFDKMD-ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDL 492 (718)
Q Consensus 414 ~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~-~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~ 492 (718)
.+..... + ....-.....++++|||++.++ .+.+..|+..|++. +.++.+|+++|+..
T Consensus 89 i~~~~~~-~--~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-------------~~~~~iI~~~n~~~----- 147 (324)
T 3u61_B 89 VRGPLTN-F--ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-------------SSNCSIIITANNID----- 147 (324)
T ss_dssp HHTHHHH-H--HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-------------GGGCEEEEEESSGG-----
T ss_pred HHHHHHH-H--HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-------------CCCcEEEEEeCCcc-----
Confidence 1110000 0 0000011246799999999999 99999999999853 35688999999875
Q ss_pred CCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCH-H
Q 005024 493 RRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPR-E 571 (718)
Q Consensus 493 ~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~-~ 571 (718)
.+++++.+||.. + -...|+.++..++...++. .....+......+++ +
T Consensus 148 --------~l~~~l~sR~~~-i-~~~~~~~~e~~~il~~~~~---------------------~l~~~~~~~~~~~~~~~ 196 (324)
T 3u61_B 148 --------GIIKPLQSRCRV-I-TFGQPTDEDKIEMMKQMIR---------------------RLTEICKHEGIAIADMK 196 (324)
T ss_dssp --------GSCTTHHHHSEE-E-ECCCCCHHHHHHHHHHHHH---------------------HHHHHHHHHTCCBSCHH
T ss_pred --------ccCHHHHhhCcE-E-EeCCCCHHHHHHHHHHHHH---------------------HHHHHHHHcCCCCCcHH
Confidence 689999999964 3 2355665554444333221 111222333446777 9
Q ss_pred HHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 572 LEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 572 ~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+.+.+..+ +++++|.+.+.+..+. ....|+.+++.+++.
T Consensus 197 ~~~~l~~~---------------~~gd~R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 197 VVAALVKK---------------NFPDFRKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHHH---------------TCSCTTHHHHHHHHHG------GGTCBCC--------
T ss_pred HHHHHHHh---------------CCCCHHHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 99888874 6899999988887553 235689999887654
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=8.7e-14 Score=165.82 Aligned_cols=231 Identities=12% Similarity=0.108 Sum_probs=135.6
Q ss_pred CcccccHHHHHHHHHHHhCC----ccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC---ceee--cCCCCCC
Q 005024 336 PEIYGHEDIKKALLLLLVGA----PHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR---GVYT--TGRGSSG 406 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~----~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~---~~~~--~~~~~~~ 406 (718)
..++|++.++..+..++... ..+. +...++||+||||||||++|++++..+.+ .+.. ++.....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~-------~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPN-------RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSS-------SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCC-------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccch
Confidence 46899999888777655322 1111 11228999999999999999999998833 2222 2221111
Q ss_pred ---CcceeeEeeccccccee--eecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEE
Q 005024 407 ---VGLTAAVQRDNVTNEMV--LEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLS 481 (718)
Q Consensus 407 ---~~l~~~~~~~~~~g~~~--~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~via 481 (718)
..+.+... .+.|... .-.+++..+.++++||||+++++++.++.|+++|+++.++.. .|....+ .++.||+
T Consensus 631 ~~~s~l~g~~~--~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~iiI~ 706 (854)
T 1qvr_A 631 HAVSRLIGAPP--GYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVIIL 706 (854)
T ss_dssp GGGGGC----------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEEEE
T ss_pred hHHHHHcCCCC--CCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeEEEE
Confidence 01111000 0001000 000122234578999999999999999999999999987643 2433333 4677999
Q ss_pred EeCCCCCCCC-----C--CCCcch------hcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCC
Q 005024 482 AANPAWGRYD-----L--RRTPAE------NINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTP 548 (718)
Q Consensus 482 a~Np~~g~~~-----~--~~~~~~------~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 548 (718)
|+|.....+. . ...+.+ .-.+.++|++|||.++++ .+++.+.-..|+.+.+
T Consensus 707 tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~-~pl~~edi~~i~~~~l--------------- 770 (854)
T 1qvr_A 707 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVF-RPLTKEQIRQIVEIQL--------------- 770 (854)
T ss_dssp ECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBC-CCCCHHHHHHHHHHHH---------------
T ss_pred ecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeC-CCCCHHHHHHHHHHHH---------------
Confidence 9997311000 0 000111 125889999999887765 3355444444444322
Q ss_pred CCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHH
Q 005024 549 LEPAILRAYISAARR--LSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAA 611 (718)
Q Consensus 549 ~~~~~l~~~i~~~~~--~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a 611 (718)
.++...... ..+.+++++.++|..+. ..+++++|+|.++++.+..
T Consensus 771 ------~~~~~~~~~~~~~~~~~~~a~~~L~~~~------------~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 771 ------SYLRARLAEKRISLELTEAAKDFLAERG------------YDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp ------HHHHHHHHTTTCEEEECHHHHHHHHHHH------------CBTTTBTSTHHHHHHHHTH
T ss_pred ------HHHHHHHHhCCceEEECHHHHHHHHHcC------------CCCCCChHHHHHHHHHHHH
Confidence 222221111 23469999999999863 1248999999999986543
No 50
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=2.5e-13 Score=144.69 Aligned_cols=209 Identities=19% Similarity=0.271 Sum_probs=135.9
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCc----eeecCCCCCCCcce
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRG----VYTTGRGSSGVGLT 410 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~----~~~~~~~~~~~~l~ 410 (718)
..+++|++.++..+...+..|... |+||+||||||||++++++++.+... .+.....+...+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~------------~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~- 90 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLP------------HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI- 90 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCC------------CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH-
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCc------------eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH-
Confidence 347889999999998888877432 79999999999999999999886211 0000000000010
Q ss_pred eeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCC
Q 005024 411 AAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRY 490 (718)
Q Consensus 411 ~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~ 490 (718)
...++.. +.+. ..+....+...+++|||++.|+.+.+++|+..||+. +..+.+|.++|...
T Consensus 91 -~~ir~~i-~~~~-~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~n~~~--- 151 (340)
T 1sxj_C 91 -DVVRNQI-KDFA-STRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-------------TKNTRFCVLANYAH--- 151 (340)
T ss_dssp -HHHHTHH-HHHH-HBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG---
T ss_pred -HHHHHHH-HHHH-hhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-------------CCCeEEEEEecCcc---
Confidence 0001000 0000 001111123579999999999999999999999863 34567788888764
Q ss_pred CCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCC
Q 005024 491 DLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LSPCVP 569 (718)
Q Consensus 491 ~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls 569 (718)
.+.+++.+||.. +. +.+++.+.+.+++..... ....++
T Consensus 152 ----------~i~~~i~sR~~~-~~------------------------------~~~l~~~~~~~~l~~~~~~~~~~i~ 190 (340)
T 1sxj_C 152 ----------KLTPALLSQCTR-FR------------------------------FQPLPQEAIERRIANVLVHEKLKLS 190 (340)
T ss_dssp ----------GSCHHHHTTSEE-EE------------------------------CCCCCHHHHHHHHHHHHHTTTCCBC
T ss_pred ----------ccchhHHhhcee-Ee------------------------------ccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 789999999953 32 455667777777765543 334689
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 570 RELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 570 ~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+++.+.+..+ ..|+.|.+.+++..+...+.-.+...|+.+++.+++.
T Consensus 191 ~~~~~~i~~~---------------s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 191 PNAEKALIEL---------------SNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp HHHHHHHHHH---------------HTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 9998888875 4788999888886543322211223699999877654
No 51
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.45 E-value=4.2e-13 Score=147.82 Aligned_cols=164 Identities=24% Similarity=0.199 Sum_probs=93.7
Q ss_pred cccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHC-CCceeecCCCCCCCcceeeEe
Q 005024 337 EIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVA-PRGVYTTGRGSSGVGLTAAVQ 414 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~-~~~~~~~~~~~~~~~l~~~~~ 414 (718)
+|+|++.+|..|...+..... +....+ ..+..-++||+||||||||++|++++..+ ...++..... .+.....
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~----~l~~~~~ 209 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS----DLVSKWL 209 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----------
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH----HHHhhhc
Confidence 688999999888766532100 000000 01122389999999999999999999998 4333322111 1111100
Q ss_pred ecccccceeeecceEeeecCCeeeecccccCCh-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEe
Q 005024 415 RDNVTNEMVLEGGALVLADMGICAIDEFDKMDE-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAA 483 (718)
Q Consensus 415 ~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~ 483 (718)
.... ......-........+|+||||++.+.. ..++.|+..|+.-. .-+.++.||+|+
T Consensus 210 g~~~-~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI~at 278 (444)
T 2zan_A 210 GESE-KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGAT 278 (444)
T ss_dssp --CC-CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEEEEE
T ss_pred chHH-HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEEecC
Confidence 0000 0000000000112457999999999832 24455666665310 124578999999
Q ss_pred CCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHh
Q 005024 484 NPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMAR 530 (718)
Q Consensus 484 Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~ 530 (718)
|+.. .+++++++||+..+.+ +.|+......|..
T Consensus 279 n~~~-------------~ld~al~rRf~~~i~i-~~P~~~~r~~il~ 311 (444)
T 2zan_A 279 NIPW-------------VLDSAIRRRFEKRIYI-PLPEAHARAAMFR 311 (444)
T ss_dssp SCGG-------------GSCHHHHTTCCEEEEC-CCCCHHHHHHHHH
T ss_pred CCcc-------------ccCHHHHhhcceEEEe-CCcCHHHHHHHHH
Confidence 9885 7999999999876654 6676655554433
No 52
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=1e-12 Score=142.20 Aligned_cols=289 Identities=16% Similarity=0.123 Sum_probs=164.0
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHC-----------CCceee-c-CC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVA-----------PRGVYT-T-GR 402 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~-----------~~~~~~-~-~~ 402 (718)
.+++|++.....+...+........+. +++|+||||||||++++++++.+ ...+.. . ..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~--------~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKF--------SNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCC--------EEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCC--------cEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 578999988777664443210000111 79999999999999999999875 222111 1 00
Q ss_pred CC-CCCcceeeEeec------ccccc---eeeecceEeeecCC-eeeecccccCChHH-HHH-HHHhhcccEEEEeeCCe
Q 005024 403 GS-SGVGLTAAVQRD------NVTNE---MVLEGGALVLADMG-ICAIDEFDKMDESD-RTA-IHEVMEQQTVSIAKAGI 469 (718)
Q Consensus 403 ~~-~~~~l~~~~~~~------~~~g~---~~~~~g~l~~a~~g-il~iDEi~~~~~~~-~~~-L~~~me~~~i~i~k~g~ 469 (718)
.. +...+....... +..+. ..+..-.-.+...+ +++|||++.+.... +.. +...++..
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~--------- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD--------- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS---------
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC---------
Confidence 00 000000000000 00000 00000000011223 99999999987542 455 44444321
Q ss_pred EEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCC
Q 005024 470 TTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPL 549 (718)
Q Consensus 470 ~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~ 549 (718)
.++.+|+++|...-.. .+.+++++||...+. ++|+
T Consensus 163 -----~~~~iI~~t~~~~~~~----------~l~~~l~sr~~~~i~------------------------------l~~l 197 (384)
T 2qby_B 163 -----ANISVIMISNDINVRD----------YMEPRVLSSLGPSVI------------------------------FKPY 197 (384)
T ss_dssp -----SCEEEEEECSSTTTTT----------TSCHHHHHTCCCEEE------------------------------ECCC
T ss_pred -----cceEEEEEECCCchHh----------hhCHHHHhcCCCeEE------------------------------ECCC
Confidence 4688999999763212 678999999866443 3455
Q ss_pred CHHHHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 005024 550 EPAILRAYISAARR--L-SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDV 626 (718)
Q Consensus 550 ~~~~l~~~i~~~~~--~-~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv 626 (718)
+.+.+..++...-. + ...+++++.+.+.++.. ..+|++|.+.++++.|...|. ....|+.+|+
T Consensus 198 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~------------~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v 263 (384)
T 2qby_B 198 DAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISA------------KEHGDARKAVNLLFRAAQLAS--GGGIIRKEHV 263 (384)
T ss_dssp CHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHH------------TTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHH------------hccCCHHHHHHHHHHHHHHhc--CCCccCHHHH
Confidence 66666666654322 2 24688999888888641 246999999999999988886 5678999999
Q ss_pred HHHHHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcC---CCHHHHHHHHHHHHhcCe
Q 005024 627 DEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKG---YSEAQLKECLEEYAALNV 703 (718)
Q Consensus 627 ~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~~~~~l~~l~~~g~ 703 (718)
..|+..+..+..... ..... .....++.++ .. .....--+......|+..| ++...+.++++.|.+.|+
T Consensus 264 ~~~~~~~~~~~~~~~--~~~l~--~~~~~~l~al---~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gl 335 (384)
T 2qby_B 264 DKAIVDYEQERLIEA--VKALP--FHYKLALRSL---IE-SEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGI 335 (384)
T ss_dssp HHHHHHHHHHHHHHH--HHSSC--HHHHHHHHHH---HT-CCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcchHHHH--HHcCC--HHHHHHHHHH---HH-hcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Confidence 999887653221100 00000 1112222222 22 1100001123334455555 667999999999999999
Q ss_pred EEEeC
Q 005024 704 WQIHP 708 (718)
Q Consensus 704 i~~~~ 708 (718)
+....
T Consensus 336 i~~~~ 340 (384)
T 2qby_B 336 VKIRI 340 (384)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98853
No 53
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.42 E-value=4.9e-13 Score=147.02 Aligned_cols=218 Identities=21% Similarity=0.220 Sum_probs=128.6
Q ss_pred CcccccHHHHHHHHHHHh--CCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeE
Q 005024 336 PEIYGHEDIKKALLLLLV--GAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAV 413 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~--~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~ 413 (718)
.+|.|++.+|..+...+. .....-..-| .+-+-++||+||||||||++|++++..+...++..... . +.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g--~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~-~---~~--- 86 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIG--ARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGS-D---FV--- 86 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTT--CCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGG-G---TT---
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcC--CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHH-H---HH---
Confidence 357788877766653321 1110000001 11222699999999999999999999876554432110 0 00
Q ss_pred eecccccce-eeecceEeee---cCCeeeecccccCChH--------------HHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 414 QRDNVTNEM-VLEGGALVLA---DMGICAIDEFDKMDES--------------DRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 414 ~~~~~~g~~-~~~~g~l~~a---~~gil~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
..+.|.. ....+.+..| ...|+||||++.+... .++.|+..|+.- .-+.
T Consensus 87 --~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-----------~~~~ 153 (476)
T 2ce7_A 87 --ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF-----------DSKE 153 (476)
T ss_dssp --TCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS-----------CGGG
T ss_pred --HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc-----------CCCC
Confidence 0000100 0001112222 2469999999998542 345566666520 0134
Q ss_pred ceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHH
Q 005024 476 RTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAI 553 (718)
Q Consensus 476 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 553 (718)
++.||+|+|... .+++++++ |||..+.+ +.|+......|.++.+.
T Consensus 154 ~viVIaaTn~~~-------------~Ld~allR~gRFd~~i~i-~~Pd~~~R~~Il~~~~~------------------- 200 (476)
T 2ce7_A 154 GIIVMAATNRPD-------------ILDPALLRPGRFDKKIVV-DPPDMLGRKKILEIHTR------------------- 200 (476)
T ss_dssp TEEEEEEESCGG-------------GSCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHHT-------------------
T ss_pred CEEEEEecCChh-------------hhchhhcccCcceeEeec-CCCCHHHHHHHHHHHHH-------------------
Confidence 789999999875 68899987 99987654 67777666555433221
Q ss_pred HHHHHHHHHhcCCCCCHHH-HHHHHHHHHHhhHhhhhcCCCCcccC-HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 554 LRAYISAARRLSPCVPREL-EEYIAAAYSNIRQEEAKSNTPHSYTT-VRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 554 l~~~i~~~~~~~p~ls~~~-~~~l~~~y~~lr~~~~~~~~~~~~~s-~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
.. | +++++ .+.+.. .|++. .|.|.++++.|...|..+....|+.+|+..|+.
T Consensus 201 ---------~~-~-l~~~v~l~~la~---------------~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 201 ---------NK-P-LAEDVNLEIIAK---------------RTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAID 254 (476)
T ss_dssp ---------TS-C-BCTTCCHHHHHH---------------TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ---------hC-C-CcchhhHHHHHH---------------hcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 11 1 11111 233332 25554 489999999888888777778899999999987
Q ss_pred HHh
Q 005024 632 LMQ 634 (718)
Q Consensus 632 l~~ 634 (718)
.+.
T Consensus 255 ~v~ 257 (476)
T 2ce7_A 255 RVI 257 (476)
T ss_dssp HHC
T ss_pred HHh
Confidence 553
No 54
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.42 E-value=2.6e-12 Score=139.13 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=94.1
Q ss_pred cCCeeeecccccCChH------------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhc
Q 005024 433 DMGICAIDEFDKMDES------------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENI 500 (718)
Q Consensus 433 ~~gil~iDEi~~~~~~------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~ 500 (718)
.+|++++||||++... .|.+|+++||...++. +. .... -.++.+|||+.... ..+ .
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~-~~~d-~~~ilfI~~gaf~~-----~~~----~ 317 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KH-GMVK-TDHILFIASGAFQV-----ARP----S 317 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TT-EEEE-CTTCEEEEEECCSS-----CCG----G
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-cc-ceec-CCcEEEEecccccc-----CCh----h
Confidence 6889999999998543 6789999999766554 22 2222 24788898872110 000 1
Q ss_pred CCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHH
Q 005024 501 NLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR--LSPCVPRELEEYIAA 578 (718)
Q Consensus 501 ~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~ls~~~~~~l~~ 578 (718)
++.++|++||+.++.+ +..+.+.-.+|+..- ....+++|...... ..-.++++|.+.|++
T Consensus 318 dlipel~~R~~i~i~l-~~lt~~e~~~Il~~~-----------------~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~ 379 (444)
T 1g41_A 318 DLIPELQGRLPIRVEL-TALSAADFERILTEP-----------------HASLTEQYKALMATEGVNIAFTTDAVKKIAE 379 (444)
T ss_dssp GSCHHHHTTCCEEEEC-CCCCHHHHHHHHHSS-----------------TTCHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred hcchHHhcccceeeeC-CCCCHHHHHHHHHHH-----------------HHhHHHHHHHHhcccCceEEECHHHHHHHHH
Confidence 3558999999987765 333333333443210 01134555444332 233699999999999
Q ss_pred HHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcC------CCCccHHHHHHHH
Q 005024 579 AYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRF------SETVAQSDVDEAL 630 (718)
Q Consensus 579 ~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~------~~~V~~~dv~~ai 630 (718)
.+...... ...+++|.|.+++.-...-+..+. .-.|+.++|.+.+
T Consensus 380 ~a~~~~~~-------t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l 430 (444)
T 1g41_A 380 AAFRVNEK-------TENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADAL 430 (444)
T ss_dssp HHHHHHHH-------SCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHH
T ss_pred HHHHhccC-------CccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhc
Confidence 87654322 234678988888763322221111 1136777777654
No 55
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.40 E-value=3.8e-12 Score=127.72 Aligned_cols=210 Identities=17% Similarity=0.153 Sum_probs=133.2
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCC----C-----
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS----S----- 405 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~----~----- 405 (718)
..+++|++..+..+...+..+... -.++|+||||+|||++++.+++.+........... .
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~-----------~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIH-----------HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCC-----------SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCC-----------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 347899999988888777654311 16899999999999999999987632211000000 0
Q ss_pred CCcceeeEeecccc--cce----eeec--ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCce
Q 005024 406 GVGLTAAVQRDNVT--NEM----VLEG--GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNART 477 (718)
Q Consensus 406 ~~~l~~~~~~~~~~--g~~----~~~~--g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~ 477 (718)
..........+... ... .+.. .........+++|||++.+++..+..|+..+++. +.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~~ 157 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHV 157 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTE
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-------------CCce
Confidence 00000000000000 000 0000 0001123569999999999999999999999742 3467
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAY 557 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 557 (718)
.+|+++|... .+.+++.+|+..+. +++++.+++.++
T Consensus 158 ~~i~~t~~~~-------------~~~~~l~~r~~~i~-------------------------------l~~l~~~e~~~~ 193 (250)
T 1njg_A 158 KFLLATTDPQ-------------KLPVTILSRCLQFH-------------------------------LKALDVEQIRHQ 193 (250)
T ss_dssp EEEEEESCGG-------------GSCHHHHTTSEEEE-------------------------------CCCCCHHHHHHH
T ss_pred EEEEEeCChH-------------hCCHHHHHHhhhcc-------------------------------CCCCCHHHHHHH
Confidence 8888888654 67888999973221 455666677777
Q ss_pred HHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 558 ISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 558 i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+...- .....+++++.+.+.++ .++++|.+.++++.+.+. ....|+.+||.+++.
T Consensus 194 l~~~~~~~~~~~~~~~~~~l~~~---------------~~G~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 194 LEHILNEEHIAHEPRALQLLARA---------------AEGSLRDALSLTDQAIAS----GDGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHH---------------HTTCHHHHHHHHHHHHTT----TTSSBCHHHHHHHSC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHhc----cCceecHHHHHHHhC
Confidence 65543 33446888888888775 368999999999876433 345899999998763
No 56
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.40 E-value=1.7e-12 Score=143.51 Aligned_cols=218 Identities=23% Similarity=0.236 Sum_probs=128.2
Q ss_pred CcccccHHHHHHHHHHHh--CCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceee
Q 005024 336 PEIYGHEDIKKALLLLLV--GAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAA 412 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~--~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~ 412 (718)
.+|.|++.+|..+..... .... .......+-+-++||+||||||||+||++++..+...++. .+....
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~--~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~------- 101 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPS--RFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV------- 101 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGG--GTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGT-------
T ss_pred HHcCCcHHHHHHHHHHHHHhhchh--hhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHH-------
Confidence 356677776665543221 1111 1111111222269999999999999999999998655443 221110
Q ss_pred Eeecccccceeee-cceEeee---cCCeeeecccccCChH--------------HHHHHHHhhcccEEEEeeCCeEEEec
Q 005024 413 VQRDNVTNEMVLE-GGALVLA---DMGICAIDEFDKMDES--------------DRTAIHEVMEQQTVSIAKAGITTSLN 474 (718)
Q Consensus 413 ~~~~~~~g~~~~~-~g~l~~a---~~gil~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~k~g~~~~l~ 474 (718)
..+.|..... ...+..+ ..+++||||++.+... ..+.|+..|+.+. .+
T Consensus 102 ---~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~ 167 (499)
T 2dhr_A 102 ---EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KD 167 (499)
T ss_dssp ---SSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SS
T ss_pred ---HhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cC
Confidence 0001100000 0011111 2479999999987421 2244555555221 13
Q ss_pred CceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHH
Q 005024 475 ARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPA 552 (718)
Q Consensus 475 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 552 (718)
..+.++|++|.+. .+++++++ |||..+.+ +.|+......|.+..+.
T Consensus 168 ~~viviAatn~p~-------------~LD~aLlr~gRfdr~i~i-~~Pd~~~R~~IL~~~~~------------------ 215 (499)
T 2dhr_A 168 TAIVVMAATNRPD-------------ILDPALLRPGRFDRQIAI-DAPDVKGREQILRIHAR------------------ 215 (499)
T ss_dssp CCCEEEECCSCGG-------------GSCTTTSSTTSSCCEEEC-CCCCHHHHHHHHHHTTS------------------
T ss_pred ccEEEEEecCChh-------------hcCcccccccccceEEec-CCCCHHHHHHHHHHHHh------------------
Confidence 4578899999875 58999998 89986654 77877666555432111
Q ss_pred HHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHhhHhhhhcCCCCcccCH-HHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 553 ILRAYISAARRLSPCVPREL-EEYIAAAYSNIRQEEAKSNTPHSYTTV-RTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 553 ~l~~~i~~~~~~~p~ls~~~-~~~l~~~y~~lr~~~~~~~~~~~~~s~-R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
.. .+++++ ...+.. .|+++. |+|+++++.|...|..+....|+.+|+.+|+
T Consensus 216 ----------~~--~l~~dv~l~~lA~---------------~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al 268 (499)
T 2dhr_A 216 ----------GK--PLAEDVDLALLAK---------------RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 268 (499)
T ss_dssp ----------SS--CCCCSSTTHHHHT---------------TSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHH
T ss_pred ----------cC--CCChHHHHHHHHH---------------hcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Confidence 00 122222 233332 366665 9999999999888877777889999999999
Q ss_pred HHHhh
Q 005024 631 RLMQM 635 (718)
Q Consensus 631 ~l~~~ 635 (718)
..+..
T Consensus 269 ~~v~~ 273 (499)
T 2dhr_A 269 DRVMM 273 (499)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 86643
No 57
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=1.9e-12 Score=139.80 Aligned_cols=296 Identities=13% Similarity=0.103 Sum_probs=168.3
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC------Cce-eec-CCCCCCC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP------RGV-YTT-GRGSSGV 407 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~------~~~-~~~-~~~~~~~ 407 (718)
..++|++.....+...+........+. +++|+||||||||++++.+++.++ ..+ +.. ....+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~--------~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 91 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPN--------NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPY 91 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCC--------CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCC--------eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHH
Confidence 578999988887776654311000111 799999999999999999998762 221 111 1000000
Q ss_pred cceeeEee-----cccccce--e-eec--ceEee-ecCCeeeecccccCC----hHHHHHHHHhhcccEEEEeeCCeEEE
Q 005024 408 GLTAAVQR-----DNVTNEM--V-LEG--GALVL-ADMGICAIDEFDKMD----ESDRTAIHEVMEQQTVSIAKAGITTS 472 (718)
Q Consensus 408 ~l~~~~~~-----~~~~g~~--~-~~~--g~l~~-a~~gil~iDEi~~~~----~~~~~~L~~~me~~~i~i~k~g~~~~ 472 (718)
.+...... .+..+.. . +.. ..+.. ....+++|||++.+. .+....|++.++..
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------------ 159 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------------ 159 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------------
Confidence 00000000 0000000 0 000 00000 113489999999885 44556666666532
Q ss_pred ecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHH
Q 005024 473 LNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPA 552 (718)
Q Consensus 473 l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 552 (718)
-..++.+|+++|...-.. .+.+++.+||....+ .+++++.+
T Consensus 160 ~~~~~~~I~~~~~~~~~~----------~~~~~~~~r~~~~~i-----------------------------~l~~l~~~ 200 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVD----------LLDPRVKSSLSEEEI-----------------------------IFPPYNAE 200 (386)
T ss_dssp CC--EEEEEEESCGGGGG----------GCTTHHHHTTTTEEE-----------------------------EECCCCHH
T ss_pred CCCeEEEEEEECCCChHh----------hhCHHHhccCCCeeE-----------------------------EeCCCCHH
Confidence 123567888888652111 467888899854222 13456666
Q ss_pred HHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 005024 553 ILRAYISAARR--L-SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEA 629 (718)
Q Consensus 553 ~l~~~i~~~~~--~-~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~a 629 (718)
.+..++...-. . ...+++++.+.+..+.. ...+++|.+..+++.+...|..++...|+.+|+..|
T Consensus 201 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a 268 (386)
T 2qby_A 201 ELEDILTKRAQMAFKPGVLPDNVIKLCAALAA------------REHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMA 268 (386)
T ss_dssp HHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHH------------HTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH------------HhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 66666654322 2 24688999888887631 123899999999999988888888889999999999
Q ss_pred HHHHhhhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHH----HHHHHcCCCH---HHHHHHHHHHHhcC
Q 005024 630 LRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHAL----NWISRKGYSE---AQLKECLEEYAALN 702 (718)
Q Consensus 630 i~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~----~~~~~~g~~~---~~~~~~l~~l~~~g 702 (718)
+..+....... ..... ......++.++..+.. .+..+++.++++ +.++..|.++ ..+.+.++.|.+.|
T Consensus 269 ~~~~~~~~~~~--~~~~l--~~~~~~il~ai~~~~~-~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~g 343 (386)
T 2qby_A 269 KEEIERDRVRD--IILTL--PFHSKLVLMAVVSISS-EENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVG 343 (386)
T ss_dssp HHHHHHHHHHH--HHHTS--CHHHHHHHHHHHHHC------CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhhchHHH--HHHcC--CHHHHHHHHHHHHHHh-cCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Confidence 88765332110 00000 1122334444443221 122346666663 3355556554 99999999999999
Q ss_pred eEEEe
Q 005024 703 VWQIH 707 (718)
Q Consensus 703 ~i~~~ 707 (718)
++...
T Consensus 344 li~~~ 348 (386)
T 2qby_A 344 ILTAK 348 (386)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99874
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.39 E-value=5.4e-13 Score=147.90 Aligned_cols=162 Identities=21% Similarity=0.222 Sum_probs=98.0
Q ss_pred CcccccHHHHHHHHHHHhCCc-cccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGAP-HRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~-~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (718)
.+|.|++..++.|...+.... .+........+.+.++||+||||||||++|++++..+...++..... .+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~----~l~---- 275 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP----EIM---- 275 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHH----HHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEch----Hhh----
Confidence 368999998887765543210 00000000012223899999999999999999999986554431110 000
Q ss_pred ecccccce-eeecceEeeec---CCeeeecccccCCh-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 415 RDNVTNEM-VLEGGALVLAD---MGICAIDEFDKMDE-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 415 ~~~~~g~~-~~~~g~l~~a~---~gil~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
....|+. ....+.+..|. .+++||||||.+.+ ..+..|++.|+.. ..+.++.|
T Consensus 276 -~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~-----------~~~~~v~v 343 (489)
T 3hu3_A 276 -SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-----------KQRAHVIV 343 (489)
T ss_dssp -TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS-----------CTTSCEEE
T ss_pred -hhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcc-----------ccCCceEE
Confidence 0000100 01112222332 35999999976644 5678899999732 12457899
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhh
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARH 531 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~ 531 (718)
|||+|+.. .+++++.+ ||+..+.+ ..|+......|.+.
T Consensus 344 IaaTn~~~-------------~Ld~al~r~gRf~~~i~i-~~P~~~eR~~IL~~ 383 (489)
T 3hu3_A 344 MAATNRPN-------------SIDPALRRFGRFDREVDI-GIPDATGRLEILQI 383 (489)
T ss_dssp EEEESCGG-------------GBCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHH
T ss_pred EEecCCcc-------------ccCHHHhCCCcCceEEEe-CCCCHHHHHHHHHH
Confidence 99999875 68899999 99887554 66766665555443
No 59
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=5.2e-12 Score=133.04 Aligned_cols=203 Identities=18% Similarity=0.192 Sum_probs=133.5
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC-----ceeecCCCCCCCcce
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR-----GVYTTGRGSSGVGLT 410 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~-----~~~~~~~~~~~~~l~ 410 (718)
.+++|++.++..+...+..+..+ |+||+||||+|||++++.+++.+.. .+..... +...+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~-~~~~~~- 86 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMP------------HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA-SDDRGI- 86 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCC------------CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT-TSCCSH-
T ss_pred HHHHCCHHHHHHHHHHHHcCCCC------------eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC-ccccCh-
Confidence 46889999999888888766422 7999999999999999999987521 1111110 110000
Q ss_pred eeEeecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCC
Q 005024 411 AAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRY 490 (718)
Q Consensus 411 ~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~ 490 (718)
...++.. ..+......+..+...+++|||++.++...+.+|+..+++. +.++.+|.++|...
T Consensus 87 -~~i~~~~-~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~~--- 148 (323)
T 1sxj_B 87 -DVVRNQI-KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-------------SNSTRFAFACNQSN--- 148 (323)
T ss_dssp -HHHHTHH-HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-------------TTTEEEEEEESCGG---
T ss_pred -HHHHHHH-HHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-------------CCCceEEEEeCChh---
Confidence 0000000 00000000010123569999999999999999999999852 34677888888754
Q ss_pred CCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCC
Q 005024 491 DLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCVP 569 (718)
Q Consensus 491 ~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~ls 569 (718)
.+.+++.+|+..+. +.+++.+.+.+++.... .....++
T Consensus 149 ----------~l~~~l~sr~~~i~-------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (323)
T 1sxj_B 149 ----------KIIEPLQSQCAILR-------------------------------YSKLSDEDVLKRLLQIIKLEDVKYT 187 (323)
T ss_dssp ----------GSCHHHHTTSEEEE-------------------------------CCCCCHHHHHHHHHHHHHHHTCCBC
T ss_pred ----------hchhHHHhhceEEe-------------------------------ecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 68899999996332 45566677777776543 2334688
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 570 RELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 570 ~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+++.+.+.++ ..+++|.+.++++.+... ...|+.++|..++.
T Consensus 188 ~~~~~~l~~~---------------~~G~~r~a~~~l~~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 188 NDGLEAIIFT---------------AEGDMRQAINNLQSTVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHH---------------HTTCHHHHHHHHHHHHHH-----HSSBCHHHHHHHHT
T ss_pred HHHHHHHHHH---------------cCCCHHHHHHHHHHHHhc-----CCCcCHHHHHHHHC
Confidence 9998888875 378999999988755422 24699999988765
No 60
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.38 E-value=6.6e-14 Score=143.85 Aligned_cols=223 Identities=22% Similarity=0.212 Sum_probs=123.6
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
.+++|++.+++.+...+..-..+........+..-++||+||||||||++|++++..+...++..........+.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~--- 87 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGL--- 87 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSS---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcch---
Confidence 36778877777666433210000000000001112699999999999999999999876544332111100000000
Q ss_pred cccccceeeecceEeee---cCCeeeecccccCChHH---------------HHHHHHhhcccEEEEeeCCeEEEecCce
Q 005024 416 DNVTNEMVLEGGALVLA---DMGICAIDEFDKMDESD---------------RTAIHEVMEQQTVSIAKAGITTSLNART 477 (718)
Q Consensus 416 ~~~~g~~~~~~g~l~~a---~~gil~iDEi~~~~~~~---------------~~~L~~~me~~~i~i~k~g~~~~l~~~~ 477 (718)
+...+ .+.+..+ ..+++||||++.+.... +..|+..|+.. + ..+.++
T Consensus 88 ----~~~~~-~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------~---~~~~~v 152 (268)
T 2r62_A 88 ----GASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF-------G---SENAPV 152 (268)
T ss_dssp ----CSSSS-STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS-------S---CSCSCC
T ss_pred ----HHHHH-HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc-------c---cCCCCE
Confidence 00000 1111111 34899999999986542 33455555421 0 123458
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHH
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILR 555 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~ 555 (718)
.||+|+|... .+++++++ ||+..+.+ ..|+.+....+.++.+...
T Consensus 153 ~vi~ttn~~~-------------~ld~~l~r~~Rf~~~i~i-~~p~~~~r~~il~~~~~~~------------------- 199 (268)
T 2r62_A 153 IVLAATNRPE-------------ILDPALMRPGRFDRQVLV-DKPDFNGRVEILKVHIKGV------------------- 199 (268)
T ss_dssp EEEECBSCCT-------------TSCGGGGSSSSSCCCCBC-CCCCTTTHHHHHHHHTSSS-------------------
T ss_pred EEEEecCCch-------------hcCHhHcCCCCCCeEEEe-cCcCHHHHHHHHHHHHhcC-------------------
Confidence 8999999885 68899998 99866543 5666665555544333210
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 556 AYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 556 ~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
+..++...+.+.. .....+.|.+.++++.|...|..+.+..|+.+|+.+|+..+
T Consensus 200 ----------~~~~~~~~~~la~--------------~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 200 ----------KLANDVNLQEVAK--------------LTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp ----------CCCSSCCTTTTTS--------------SSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred ----------CCCCccCHHHHHH--------------HcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 0001100111111 12234569999999999888877777889999999887543
No 61
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.36 E-value=4.9e-11 Score=128.36 Aligned_cols=210 Identities=18% Similarity=0.144 Sum_probs=134.7
Q ss_pred cCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee----cCCCCC----
Q 005024 334 LAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT----TGRGSS---- 405 (718)
Q Consensus 334 i~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~----~~~~~~---- 405 (718)
-..+++|++.++..+..++..+... . .+||+||||||||++++++++.+...... ++....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~---~--------~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIH---H--------AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCC---S--------EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCCCC---e--------EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 3457999999999888887655311 0 47999999999999999999876422100 110000
Q ss_pred ----CCcceeeEeecccccceee----e-cc-eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 406 ----GVGLTAAVQRDNVTNEMVL----E-GG-ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 406 ----~~~l~~~~~~~~~~g~~~~----~-~g-~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
..++... ......+...+ . .. .-..+...+++|||++.++...++.|+..+++ .+.
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~ 148 (373)
T 1jr3_A 83 EQGRFVDLIEI-DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPE 148 (373)
T ss_dssp HTSCCSSCEEE-ETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------------CCS
T ss_pred hccCCCceEEe-cccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------------CCC
Confidence 0001000 00000000000 0 00 00112356999999999999999999999985 245
Q ss_pred ceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHH
Q 005024 476 RTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILR 555 (718)
Q Consensus 476 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~ 555 (718)
++.+|.++|... .+.+++.+|+. .+. +.+++.+.+.
T Consensus 149 ~~~~Il~~~~~~-------------~l~~~l~sr~~-~i~------------------------------~~~l~~~~~~ 184 (373)
T 1jr3_A 149 HVKFLLATTDPQ-------------KLPVTILSRCL-QFH------------------------------LKALDVEQIR 184 (373)
T ss_dssp SEEEEEEESCGG-------------GSCHHHHTTSE-EEE------------------------------CCCCCHHHHH
T ss_pred ceEEEEEeCChH-------------hCcHHHHhhee-Eee------------------------------CCCCCHHHHH
Confidence 677888887543 67889999983 322 4556667777
Q ss_pred HHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 556 AYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 556 ~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
.++...- +....+++++.+.+.++ .+|++|.+.++++.+.+.+ ...|+.+||..++.
T Consensus 185 ~~l~~~~~~~~~~~~~~a~~~l~~~---------------~~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 185 HQLEHILNEEHIAHEPRALQLLARA---------------AEGSLRDALSLTDQAIASG----DGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHH---------------SSSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHhc----CCcccHHHHHHHhC
Confidence 7776543 33446889998888875 4789999999987664433 46799999987753
No 62
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.35 E-value=8.5e-13 Score=137.96 Aligned_cols=164 Identities=21% Similarity=0.213 Sum_probs=95.8
Q ss_pred cccccHHHHHHHHHHHhCCc-cccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAP-HRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~-~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
+|.|++.+|+.+...+.... .+....+..++..-++||+||||||||++|++++..+...++..... .+......
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~----~l~~~~~g 91 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP----ELLTMWFG 91 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH----HHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH----HHHhhhcC
Confidence 57788887777664443210 00000000011122799999999999999999999986554432110 01000000
Q ss_pred cccccceeeecceEeee---cCCeeeecccccCChH--------------HHHHHHHhhcccEEEEeeCCeEEEecCceE
Q 005024 416 DNVTNEMVLEGGALVLA---DMGICAIDEFDKMDES--------------DRTAIHEVMEQQTVSIAKAGITTSLNARTA 478 (718)
Q Consensus 416 ~~~~g~~~~~~g~l~~a---~~gil~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~ 478 (718)
. +. ....+.+..+ ..+++||||++.+... .+..|+..|+.- .-+.++.
T Consensus 92 ~--~~--~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~-----------~~~~~v~ 156 (301)
T 3cf0_A 92 E--SE--ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM-----------STKKNVF 156 (301)
T ss_dssp T--CT--THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS-----------CTTSSEE
T ss_pred c--hH--HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc-----------cCCCCEE
Confidence 0 00 0000111112 2479999999986543 356778777631 0135789
Q ss_pred EEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhh
Q 005024 479 VLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 479 viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
||+|+|... .+++++++ ||+..+.+ +.|+......|.++.+
T Consensus 157 vi~atn~~~-------------~ld~al~r~gRf~~~i~i-~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 157 IIGATNRPD-------------IIDPAILRPGRLDQLIYI-PLPDEKSRVAILKANL 199 (301)
T ss_dssp EEEEESCGG-------------GSCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHH
T ss_pred EEEecCCcc-------------ccChHHhcCCccceEEec-CCcCHHHHHHHHHHHH
Confidence 999999875 78999999 99976554 7777777666655544
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.34 E-value=9e-12 Score=125.17 Aligned_cols=179 Identities=18% Similarity=0.208 Sum_probs=113.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc----eeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG----VYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
+++|+||||||||++++.+++.+... .+.... .+. +.... .+. .....++++|||++.+.
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~-----~~~-----~~~~~--~~~----~~~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG-----IHA-----SISTA--LLE----GLEQFDLICIDDVDAVA 117 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG-----GGG-----GSCGG--GGT----TGGGSSEEEEETGGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH-----HHH-----HHHHH--HHH----hccCCCEEEEecccccc
Confidence 89999999999999999999876321 111100 000 00000 000 12456899999999998
Q ss_pred hHH--HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc--eEEEeccCCCh
Q 005024 447 ESD--RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD--LLWLILDRADM 522 (718)
Q Consensus 447 ~~~--~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd--li~~~~d~~~~ 522 (718)
... +..|+..++... . .....+|.++|.....+. .+.+++.+||+ ..+.+ ..++.
T Consensus 118 ~~~~~~~~l~~~l~~~~----~-------~~~~~ii~~~~~~~~~~~---------~~~~~l~~r~~~~~~i~l-~~~~~ 176 (242)
T 3bos_A 118 GHPLWEEAIFDLYNRVA----E-------QKRGSLIVSASASPMEAG---------FVLPDLVSRMHWGLTYQL-QPMMD 176 (242)
T ss_dssp TCHHHHHHHHHHHHHHH----H-------HCSCEEEEEESSCTTTTT---------CCCHHHHHHHHHSEEEEC-CCCCG
T ss_pred CCHHHHHHHHHHHHHHH----H-------cCCCeEEEEcCCCHHHHH---------HhhhhhhhHhhcCceEEe-CCCCH
Confidence 766 778888776421 0 012246667775533221 34588999995 44433 33433
Q ss_pred hHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHH
Q 005024 523 DSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRT 601 (718)
Q Consensus 523 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~ 601 (718)
+ .+.+++.... .....+++++.+.+..+ +++++|+
T Consensus 177 ~-----------------------------~~~~~l~~~~~~~~~~~~~~~~~~l~~~---------------~~g~~r~ 212 (242)
T 3bos_A 177 D-----------------------------EKLAALQRRAAMRGLQLPEDVGRFLLNR---------------MARDLRT 212 (242)
T ss_dssp G-----------------------------GHHHHHHHHHHHTTCCCCHHHHHHHHHH---------------TTTCHHH
T ss_pred H-----------------------------HHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------ccCCHHH
Confidence 3 3333333322 23346899999888874 5789999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 005024 602 LLSILRISAALARLRFSETVAQSDVDEALR 631 (718)
Q Consensus 602 l~~lirla~a~A~l~~~~~V~~~dv~~ai~ 631 (718)
+.++++.+...|.... ..|+.+|+.+++.
T Consensus 213 l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 213 LFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 9999998888885554 5699999998874
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.34 E-value=6.6e-12 Score=139.18 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=131.3
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecC-CCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTG-RGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~-~~~~~~~l~~~~~ 414 (718)
..++|++.....+...|..+... |+||+||||||||+++++++..+........ .+.....+...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~------------~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKN------------NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSC------------EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred CCccCcHHHHHHHHHHHhccCCC------------CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--
Confidence 45899999988888777654322 8999999999999999999998632110000 00000001000
Q ss_pred ecccccceeeec----ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCC
Q 005024 415 RDNVTNEMVLEG----GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRY 490 (718)
Q Consensus 415 ~~~~~g~~~~~~----g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~ 490 (718)
..+.|++.... ..+..+.++|+||| ...+.++.|+.+|+.+ ++.+|+|+|+..-
T Consensus 246 -~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g---------------~v~vI~at~~~e~-- 303 (468)
T 3pxg_A 246 -TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------ELQCIGATTLDEY-- 303 (468)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SCEEEEECCTTTT--
T ss_pred -ccccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC---------------CEEEEecCCHHHH--
Confidence 11122221110 01111347899999 4556777888888754 4678999998741
Q ss_pred CCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcC--CCC
Q 005024 491 DLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLS--PCV 568 (718)
Q Consensus 491 ~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~--p~l 568 (718)
...+.++++|.+||.. +..+.|+.+....|.+++...+.... -..++.+.+.....++..+. ..+
T Consensus 304 ------~~~~~~~~al~~Rf~~--i~v~~p~~e~~~~iL~~~~~~~~~~~-----~~~i~~~al~~l~~~s~~~~~~~~l 370 (468)
T 3pxg_A 304 ------RKYIEKDAALERRFQP--IQVDQPSVDESIQILQGLRDRYEAHH-----RVSITDDAIEAAVKLSDRYISDRFL 370 (468)
T ss_dssp ------HHHHTTCSHHHHSEEE--EECCCCCHHHHHHHHHHTTTTSGGGS-----SCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred ------HHHhhcCHHHHHhCcc--ceeCCCCHHHHHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHHhccCcC
Confidence 1123689999999975 44588888888888877665432111 12377778887777776643 347
Q ss_pred CHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHH
Q 005024 569 PRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRIS 609 (718)
Q Consensus 569 s~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla 609 (718)
++.+.+.+.......+-. ...+|.+++++++.+...
T Consensus 371 p~~ai~ll~~a~~~~~~~-----~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 371 PDKAIDLIDEAGSKVRLR-----SFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp THHHHHHHHHHHHHHHHH-----TTSCCSSTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-----cCCCchHHHHHHHHHHHH
Confidence 888888887665444432 235788888888877643
No 65
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.34 E-value=8.3e-13 Score=122.28 Aligned_cols=108 Identities=11% Similarity=0.161 Sum_probs=75.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc---e-eecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG---V-YTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
||||+||||||||++|++++..+++. + ..++.... . ....|.+..+++|++||||++.++
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~---------------~-~~~~~~~~~a~~g~l~ldei~~l~ 89 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN---------------A-PQLNDFIALAQGGTLVLSHPEHLT 89 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTT---------------S-SCHHHHHHHHTTSCEEEECGGGSC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCc---------------c-hhhhcHHHHcCCcEEEEcChHHCC
Confidence 89999999999999999999987542 1 11111110 0 123355566789999999999999
Q ss_pred hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 447 ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 447 ~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
++.|..|+++|+. .+.++++|+|+|.....+ ...-.+.+.|+.|+..+
T Consensus 90 ~~~q~~Ll~~l~~-------------~~~~~~~I~~t~~~~~~~------~~~~~~~~~L~~rl~~~ 137 (145)
T 3n70_A 90 REQQYHLVQLQSQ-------------EHRPFRLIGIGDTSLVEL------AASNHIIAELYYCFAMT 137 (145)
T ss_dssp HHHHHHHHHHHHS-------------SSCSSCEEEEESSCHHHH------HHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-------------cCCCEEEEEECCcCHHHH------HHcCCCCHHHHHHhcCC
Confidence 9999999999932 245788999999762100 11125677888887544
No 66
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.32 E-value=2e-13 Score=126.13 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=77.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDR 450 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 450 (718)
||||+||||||||++|++++..++ .++..... .+.. ....|.+..+++|++||||++.++++.|
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~----~~~~-----------~~~~~~~~~a~~~~l~lDei~~l~~~~q 92 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARV----EYLI-----------DMPMELLQKAEGGVLYVGDIAQYSRNIQ 92 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEECCSST----THHH-----------HCHHHHHHHTTTSEEEEEECTTCCHHHH
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeEEechh----hCCh-----------HhhhhHHHhCCCCeEEEeChHHCCHHHH
Confidence 899999999999999999998775 22211110 0100 0134555667889999999999999999
Q ss_pred HHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEE
Q 005024 451 TAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWL 515 (718)
Q Consensus 451 ~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~ 515 (718)
..|+++|+++. +.++++|+|+|...... ..- +.+.|++|+..+.+
T Consensus 93 ~~Ll~~l~~~~------------~~~~~iI~~tn~~~~~~-------~~~-~~~~L~~rl~~~~i 137 (143)
T 3co5_A 93 TGITFIIGKAE------------RCRVRVIASCSYAAGSD-------GIS-CEEKLAGLFSESVV 137 (143)
T ss_dssp HHHHHHHHHHT------------TTTCEEEEEEEECTTTC---------C-HHHHHHHHSSSEEE
T ss_pred HHHHHHHHhCC------------CCCEEEEEecCCCHHHH-------HhC-ccHHHHHHhcCcEE
Confidence 99999998752 56789999999764221 111 66788888765543
No 67
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.27 E-value=1.9e-11 Score=129.18 Aligned_cols=186 Identities=14% Similarity=0.193 Sum_probs=107.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC---Cce-eecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP---RGV-YTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~---~~~-~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
+++|+||||||||++|++++..+. ..+ +...... ...+.... .......+ . -...+.+++||||++.++
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~-~~~~~~~~-~~~~~~~~--~---~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF-AQAMVEHL-KKGTINEF--R---NMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HHHHHHHH-HHTCHHHH--H---HHHHTCSEEEEECGGGGT
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH-HHHHHHHH-HcCcHHHH--H---HHhcCCCEEEEcCccccc
Confidence 799999999999999999998762 221 1110000 00000000 00000000 0 001246899999999998
Q ss_pred h--HHHHHHHHhhcccEEEEeeCCeEEEecCc-eEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc--eEEEeccCCC
Q 005024 447 E--SDRTAIHEVMEQQTVSIAKAGITTSLNAR-TAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD--LLWLILDRAD 521 (718)
Q Consensus 447 ~--~~~~~L~~~me~~~i~i~k~g~~~~l~~~-~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd--li~~~~d~~~ 521 (718)
. ..+..++..++... ... ..|+++.|+...-. .++++|++||+ +++.+
T Consensus 112 ~~~~~~~~l~~~l~~~~------------~~~~~iii~~~~~~~~l~----------~l~~~L~sR~~~~~~i~l----- 164 (324)
T 1l8q_A 112 GKERTQIEFFHIFNTLY------------LLEKQIILASDRHPQKLD----------GVSDRLVSRFEGGILVEI----- 164 (324)
T ss_dssp TCHHHHHHHHHHHHHHH------------HTTCEEEEEESSCGGGCT----------TSCHHHHHHHHTSEEEEC-----
T ss_pred CChHHHHHHHHHHHHHH------------HCCCeEEEEecCChHHHH----------HhhhHhhhcccCceEEEe-----
Confidence 6 56777777665310 111 23444444432111 58899999996 44432
Q ss_pred hhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHH
Q 005024 522 MDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVR 600 (718)
Q Consensus 522 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R 600 (718)
+| +.++...++.... .....+++++.+.|..+ . +++|
T Consensus 165 -------------------------~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~---------------~-g~~r 202 (324)
T 1l8q_A 165 -------------------------EL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLEN---------------T-KNVR 202 (324)
T ss_dssp -------------------------CC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH---------------C-SSHH
T ss_pred -------------------------CC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh---------------C-CCHH
Confidence 33 3334444443322 23446899999998875 4 8999
Q ss_pred HHHHHHHHHHHHH--H--hcCCCCc-cHHHHHHHHHH
Q 005024 601 TLLSILRISAALA--R--LRFSETV-AQSDVDEALRL 632 (718)
Q Consensus 601 ~l~~lirla~a~A--~--l~~~~~V-~~~dv~~ai~l 632 (718)
++++++..+.+.. . +.....| +.+++.+++.-
T Consensus 203 ~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 203 EIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHH
Confidence 9999998766550 0 1123457 88888888764
No 68
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.26 E-value=2.4e-12 Score=132.54 Aligned_cols=171 Identities=11% Similarity=0.189 Sum_probs=97.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccC-----
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKM----- 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~----- 445 (718)
++||+||||||||++|+++++.+...++.........|............ .+. ......++++||||++.+
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~--~~~--~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKK--IFD--DAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHH--HHH--HHHTSSEEEEEECCHHHHTTCBT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHH--HHH--HHHhcCCcEEEEEChhhhhccCC
Confidence 89999999999999999999987554332211100001000000000000 000 001134689999999987
Q ss_pred -----ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCCh-hhhcccceEEEeccC
Q 005024 446 -----DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPP-ALLSRFDLLWLILDR 519 (718)
Q Consensus 446 -----~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~-~ll~Rfdli~~~~d~ 519 (718)
....+..|.+.++.. ...+.++.+|+|+|... .+++ .+.+||+..+.+
T Consensus 142 ~~~~~~~~~l~~L~~~~~~~----------~~~~~~~~ii~ttn~~~-------------~l~~~~l~~rf~~~i~~--- 195 (272)
T 1d2n_A 142 IGPRFSNLVLQALLVLLKKA----------PPQGRKLLIIGTTSRKD-------------VLQEMEMLNAFSTTIHV--- 195 (272)
T ss_dssp TTTBCCHHHHHHHHHHTTCC----------CSTTCEEEEEEEESCHH-------------HHHHTTCTTTSSEEEEC---
T ss_pred CChhHHHHHHHHHHHHhcCc----------cCCCCCEEEEEecCChh-------------hcchhhhhcccceEEcC---
Confidence 333444455544421 11234678999999764 3444 678899877643
Q ss_pred CChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCH
Q 005024 520 ADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTV 599 (718)
Q Consensus 520 ~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~ 599 (718)
|+.... +.+.+++... ..+++++.+.+..... ...|++++
T Consensus 196 p~l~~r--------------------------~~i~~i~~~~----~~~~~~~~~~l~~~~~----------g~~~~g~i 235 (272)
T 1d2n_A 196 PNIATG--------------------------EQLLEALELL----GNFKDKERTTIAQQVK----------GKKVWIGI 235 (272)
T ss_dssp CCEEEH--------------------------HHHHHHHHHH----TCSCHHHHHHHHHHHT----------TSEEEECH
T ss_pred CCccHH--------------------------HHHHHHHHhc----CCCCHHHHHHHHHHhc----------CCCccccH
Confidence 222221 3333333321 2467877777766431 13588999
Q ss_pred HHHHHHHHHHHH
Q 005024 600 RTLLSILRISAA 611 (718)
Q Consensus 600 R~l~~lirla~a 611 (718)
|++.++++.|..
T Consensus 236 r~l~~~l~~a~~ 247 (272)
T 1d2n_A 236 KKLLMLIEMSLQ 247 (272)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=1.2e-10 Score=124.32 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=120.5
Q ss_pred CcccccHHHHHHHHHHH-hCCccccCCCCccccccceeeecCCCcchHHHHHHHHHH-HCCCc---eeecCCCCC-----
Q 005024 336 PEIYGHEDIKKALLLLL-VGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIIN-VAPRG---VYTTGRGSS----- 405 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l-~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~-~~~~~---~~~~~~~~~----- 405 (718)
.+++|++.++..+...+ ..+... |++|+||||+|||++++.+++ +.+.. +...|....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~------------~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLP------------HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCC------------CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCC------------eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 36789999988887766 443211 799999999999999999999 44321 000000000
Q ss_pred --CCcce-e--eEeeccc-cccee---e--------ecceE--------eeecCCeeeecccccCChHHHHHHHHhhccc
Q 005024 406 --GVGLT-A--AVQRDNV-TNEMV---L--------EGGAL--------VLADMGICAIDEFDKMDESDRTAIHEVMEQQ 460 (718)
Q Consensus 406 --~~~l~-~--~~~~~~~-~g~~~---~--------~~g~l--------~~a~~gil~iDEi~~~~~~~~~~L~~~me~~ 460 (718)
..+.. . ....... .+... . ....+ ...+..+++|||++.|++..+.+|++.|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 00000 0 0000000 00000 0 00000 1234569999999999999999999999852
Q ss_pred EEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCC
Q 005024 461 TVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKE 540 (718)
Q Consensus 461 ~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~ 540 (718)
+.++.+|.++|... .+.+++.+|| ..+.
T Consensus 162 -------------~~~~~~Il~t~~~~-------------~l~~~l~sR~-~~~~------------------------- 189 (354)
T 1sxj_E 162 -------------SKNIRLIMVCDSMS-------------PIIAPIKSQC-LLIR------------------------- 189 (354)
T ss_dssp -------------TTTEEEEEEESCSC-------------SSCHHHHTTS-EEEE-------------------------
T ss_pred -------------cCCCEEEEEeCCHH-------------HHHHHHHhhc-eEEe-------------------------
Confidence 34567888888654 6889999999 4332
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-cCCCCC-HHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHH
Q 005024 541 SPALGFTPLEPAILRAYISAARR-LSPCVP-RELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALA 613 (718)
Q Consensus 541 ~~~~~~~~~~~~~l~~~i~~~~~-~~p~ls-~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A 613 (718)
+.+++.+.+.+++..... ....++ +++.+.|... ..+++|.+.+++..+...+
T Consensus 190 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~---------------~~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 190 -----CPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA---------------SNGNLRVSLLMLESMALNN 244 (354)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHH---------------HTTCHHHHHHHHTHHHHTT
T ss_pred -----cCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhC
Confidence 455667777777765433 334578 8888888875 4789999999998665543
No 70
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.24 E-value=8.4e-12 Score=129.82 Aligned_cols=182 Identities=8% Similarity=0.058 Sum_probs=106.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC---------c--eeecCCC-CCCCcceeeEeecccccc-----ee-------eec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR---------G--VYTTGRG-SSGVGLTAAVQRDNVTNE-----MV-------LEG 426 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~---------~--~~~~~~~-~~~~~l~~~~~~~~~~g~-----~~-------~~~ 426 (718)
+++|+||||||||++++++++.+.. . ++..+.. .+.......+ .....|. .. +..
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I-~~~L~g~~~~~~~~~~~L~~~f~~ 125 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI-WFAISKENLCGDISLEALNFYITN 125 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH-HHHHSCCC--CCCCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH-HHHhcCCCCCchHHHHHHHHHHHH
Confidence 8999999999999999999988731 1 2222221 1100000000 0000010 00 000
Q ss_pred ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhh
Q 005024 427 GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPAL 506 (718)
Q Consensus 427 g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~l 506 (718)
..-......|++|||+|.+. .|..|+..++-.. .-..++.+|+.+|...-.+ ..+++++
T Consensus 126 ~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~----------~~~s~~~vI~i~n~~d~~~---------~~L~~~v 184 (318)
T 3te6_A 126 VPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS----------SKNSKLSIICVGGHNVTIR---------EQINIMP 184 (318)
T ss_dssp SCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH----------CSSCCEEEEEECCSSCCCH---------HHHHTCH
T ss_pred hhhccCCceEEEEecHHHhh--cchHHHHHHhccc----------ccCCcEEEEEEecCcccch---------hhcchhh
Confidence 00001123499999999998 5667766664110 0134678999999763111 0356677
Q ss_pred hcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHh-cC--------------------
Q 005024 507 LSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARR-LS-------------------- 565 (718)
Q Consensus 507 l~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~-------------------- 565 (718)
.|||+...+. ++|++.+++..++..+.. ..
T Consensus 185 ~SR~~~~~i~-----------------------------F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~ 235 (318)
T 3te6_A 185 SLKAHFTEIK-----------------------------LNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIR 235 (318)
T ss_dssp HHHTTEEEEE-----------------------------CCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-
T ss_pred hccCCceEEE-----------------------------eCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 8999754332 556666666666655432 21
Q ss_pred ---------------CCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHh
Q 005024 566 ---------------PCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARL 615 (718)
Q Consensus 566 ---------------p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l 615 (718)
+.+++++++++.+.... ..|++|.+..++|.|...|..
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~------------~~GD~R~Al~ilr~A~~~ae~ 288 (318)
T 3te6_A 236 EGQNQKIPDNVIVINHKINNKITQLIAKNVAN------------VSGSTEKAFKICEAAVEISKK 288 (318)
T ss_dssp -------CTTEEEECEECCHHHHHHHHHHHHH------------HHCSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCHHHHHHHHHHHHh------------hCChHHHHHHHHHHHHHHHHH
Confidence 14789999998885422 469999999999999998854
No 71
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.23 E-value=4.9e-10 Score=144.25 Aligned_cols=201 Identities=21% Similarity=0.214 Sum_probs=137.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee--cCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT--TGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES 448 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~ 448 (718)
.+++.||||||||.+++++|+.+++.++. |........+ ...+. |+ ...|..+|+||||+++++
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l-----g~~~~-------g~--~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL-----SRLLV-------GI--TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH-----HHHHH-------HH--HHHTCEEEEETTTSSCHH
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh-----hHHHH-------HH--HhcCCEeeehhhhhcChH
Confidence 68999999999999999999999887655 3332221111 00011 11 123678999999999999
Q ss_pred HHHHH-------HHhhcccEEEEeeCCeEEEecCceEEEEEeCCCC-CCCCCCCCcchhcCCChhhhcccceEEEeccCC
Q 005024 449 DRTAI-------HEVMEQQTVSIAKAGITTSLNARTAVLSAANPAW-GRYDLRRTPAENINLPPALLSRFDLLWLILDRA 520 (718)
Q Consensus 449 ~~~~L-------~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~ 520 (718)
.++++ +++|.++..++.-.|....++..|.+++|+||.+ |+. +||++|.+||--+. .+.|
T Consensus 713 vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~----------eLP~~Lk~~Fr~v~--m~~P 780 (2695)
T 4akg_A 713 VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRS----------ELPENLKKSFREFS--MKSP 780 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSC----------CCCHHHHTTEEEEE--CCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcc----------cccHHHHhheEEEE--eeCC
Confidence 99887 6777666655555688999999999999999973 555 89999999994333 3566
Q ss_pred ChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHH
Q 005024 521 DMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVR 600 (718)
Q Consensus 521 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R 600 (718)
|.+. +.+.+.++.. +..++.....+...|..+|..- +...++..+.|
T Consensus 781 d~~~-----------------------------i~ei~l~s~G--f~~a~~la~kiv~~~~l~~e~l--s~q~hydfglR 827 (2695)
T 4akg_A 781 QSGT-----------------------------IAEMILQIMG--FEDSKSLASKIVHFLELLSSKC--SSMNHYHFGLR 827 (2695)
T ss_dssp CHHH-----------------------------HHHHHHHHHH--CSSHHHHHHHHHHHHHHHHHHS--CCCTTCCCSHH
T ss_pred CHHH-----------------------------HHHHHHHhcC--CCchHHHHHHHHHHHHHHHHHh--CcCCcccccHH
Confidence 5433 2233333322 2445667778888888888753 23445667899
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 601 TLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 601 ~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
.+.++++.|....+-.. -...-+.+|++-+
T Consensus 828 alksvL~~ag~lkr~~~---~e~~~l~~al~~~ 857 (2695)
T 4akg_A 828 TLKGVLRNCSPLISEFG---EGEKTVVESLKRV 857 (2695)
T ss_dssp HHHHHHHHHHHHHHHSC---SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCC---cHHHHHHHHHHHh
Confidence 99999998877765442 2333455555544
No 72
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.23 E-value=1.5e-11 Score=125.15 Aligned_cols=180 Identities=23% Similarity=0.250 Sum_probs=106.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec-CCCCCCCcceeeEeecccccceeeecc-eEeee---cCCeeeecccccC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT-GRGSSGVGLTAAVQRDNVTNEMVLEGG-ALVLA---DMGICAIDEFDKM 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~g~~~~~~g-~l~~a---~~gil~iDEi~~~ 445 (718)
+++|+||||||||+++++++..+....+.. +.. +. ....+.....-+ .+..+ ...++++||++.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~-----~~-----~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l 120 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSD-----FV-----EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 120 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH-----HH-----HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH-----HH-----HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence 599999999999999999999876443221 100 00 000010000000 01111 2368999999865
Q ss_pred ChH--------------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--c
Q 005024 446 DES--------------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--R 509 (718)
Q Consensus 446 ~~~--------------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--R 509 (718)
... ....++..|+.+. ....+.++|++|.+. .+++++++ |
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~~p~-------------~ld~~l~r~~r 176 (254)
T 1ixz_A 121 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGR 176 (254)
T ss_dssp HC---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEESCGG-------------GSCGGGGSTTS
T ss_pred hcccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccCCch-------------hCCHHHcCCCc
Confidence 311 1234444444221 122467789999775 68999998 8
Q ss_pred cceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHhhHhhh
Q 005024 510 FDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPREL-EEYIAAAYSNIRQEEA 588 (718)
Q Consensus 510 fdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~-~~~l~~~y~~lr~~~~ 588 (718)
||..+.+ +.|+.+...+|.+... +.. .+++++ ...+..
T Consensus 177 f~~~i~i-~~p~~~~r~~il~~~~----------------------------~~~--~~~~~~~~~~la~---------- 215 (254)
T 1ixz_A 177 FDRQIAI-DAPDVKGREQILRIHA----------------------------RGK--PLAEDVDLALLAK---------- 215 (254)
T ss_dssp SCEEEEC-CSCCHHHHHHHHHHHH----------------------------TTS--CBCTTCCHHHHHH----------
T ss_pred CCeEEee-CCcCHHHHHHHHHHHH----------------------------cCC--CCCcccCHHHHHH----------
Confidence 9986654 6777665555432211 111 122222 333333
Q ss_pred hcCCCCccc-CHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 589 KSNTPHSYT-TVRTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 589 ~~~~~~~~~-s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
.|++ +.|.|+++++.|...|..+....|+.+|+.+|+
T Consensus 216 -----~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 216 -----RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp -----TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred -----HcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 2444 569999999999888887777889999999875
No 73
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.22 E-value=1.9e-12 Score=149.88 Aligned_cols=161 Identities=22% Similarity=0.237 Sum_probs=96.2
Q ss_pred cccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCC---CCCcceee
Q 005024 337 EIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGS---SGVGLTAA 412 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~---~~~~l~~~ 412 (718)
+|.|.+.+|+.|...+..... +....+...+..-.+||+||||||||++|+++|..+...++...... ...|-+..
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~ 557 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA 557 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHH
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHH
Confidence 577899999998766544321 11111222333447999999999999999999999877665421110 00111111
Q ss_pred EeecccccceeeecceEeee---cCCeeeecccccCChH--------------HHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 413 VQRDNVTNEMVLEGGALVLA---DMGICAIDEFDKMDES--------------DRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 413 ~~~~~~~g~~~~~~g~l~~a---~~gil~iDEi~~~~~~--------------~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
.++. .+..| ...|+||||||.+-.. ..+.|+..|+. .. -..
T Consensus 558 ~vr~-----------lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg---------~~--~~~ 615 (806)
T 3cf2_A 558 NVRE-----------IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG---------MS--TKK 615 (806)
T ss_dssp HHHH-----------HHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHS---------SC--SSS
T ss_pred HHHH-----------HHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC---------CC--CCC
Confidence 1111 11112 3579999999987421 23556666652 21 134
Q ss_pred ceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhh
Q 005024 476 RTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 476 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
++.||||||.++ .|++|+++ |||..+.+ +.|+.+...+|.+..+
T Consensus 616 ~V~vi~aTN~p~-------------~lD~AllRpgRfd~~i~v-~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 616 NVFIIGATNRPD-------------IIDPAILRPGRLDQLIYI-PLPDEKSRVAILKANL 661 (806)
T ss_dssp SEEEECC-CCSS-------------SSCHHHHSTTTSCCEEEC------CHHHHTTTTTS
T ss_pred CEEEEEeCCCch-------------hCCHhHcCCCcceEEEEE-CCcCHHHHHHHHHHHh
Confidence 688999999887 89999999 99987764 7888877766644433
No 74
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.21 E-value=1.8e-11 Score=126.27 Aligned_cols=180 Identities=23% Similarity=0.256 Sum_probs=106.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec-CCCCCCCcceeeEeecccccceeeecc-eEeee---cCCeeeecccccC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT-GRGSSGVGLTAAVQRDNVTNEMVLEGG-ALVLA---DMGICAIDEFDKM 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~g~~~~~~g-~l~~a---~~gil~iDEi~~~ 445 (718)
+++|+||||||||+++++++..++...+.. +.. + .....+.....-+ .+..+ ...++++||++.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~-----~-----~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l 144 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSD-----F-----VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 144 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH-----H-----HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEecHHH-----H-----HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhh
Confidence 599999999999999999999886443221 100 0 0000010000000 00011 2368999999865
Q ss_pred C-----------hHHHHH---HHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--c
Q 005024 446 D-----------ESDRTA---IHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLS--R 509 (718)
Q Consensus 446 ~-----------~~~~~~---L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--R 509 (718)
. ...+.. ++..|+.+ . ....+.++|++|.+. .+++++++ |
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~ll~~lsgg---------~--~~~~~i~~a~t~~p~-------------~ld~~l~r~~r 200 (278)
T 1iy2_A 145 GRKRGSGVGGGNDEREQTLNQLLVEMDGF---------E--KDTAIVVMAATNRPD-------------ILDPALLRPGR 200 (278)
T ss_dssp HCC--------CHHHHHHHHHHHHHHTTC---------C--TTCCEEEEEEESCTT-------------SSCHHHHSTTS
T ss_pred hcccccccCCcchHHHHHHHHHHHHHhCC---------C--CCCCEEEEEecCCch-------------hCCHhHcCCCc
Confidence 2 112222 33333321 1 123467889999875 68999998 8
Q ss_pred cceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHhhHhhh
Q 005024 510 FDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPREL-EEYIAAAYSNIRQEEA 588 (718)
Q Consensus 510 fdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~-~~~l~~~y~~lr~~~~ 588 (718)
||..+.+ +.|+.+...+|.++.. +.. .+++++ ...+..
T Consensus 201 f~~~i~i-~~p~~~~r~~il~~~~----------------------------~~~--~~~~~~~~~~la~---------- 239 (278)
T 1iy2_A 201 FDRQIAI-DAPDVKGREQILRIHA----------------------------RGK--PLAEDVDLALLAK---------- 239 (278)
T ss_dssp SCCEEEC-CCCCHHHHHHHHHHHH----------------------------TTS--CBCTTCCHHHHHH----------
T ss_pred CCeEEEe-CCcCHHHHHHHHHHHH----------------------------ccC--CCCcccCHHHHHH----------
Confidence 9986654 6777665555433211 111 223322 333333
Q ss_pred hcCCCCccc-CHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 005024 589 KSNTPHSYT-TVRTLLSILRISAALARLRFSETVAQSDVDEAL 630 (718)
Q Consensus 589 ~~~~~~~~~-s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai 630 (718)
.|++ +.|+|+++++.|...|..+....|+.+|+.+|+
T Consensus 240 -----~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 240 -----RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp -----TCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred -----HcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 2555 459999999999888887778899999999885
No 75
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.19 E-value=2.5e-11 Score=133.33 Aligned_cols=187 Identities=14% Similarity=0.184 Sum_probs=114.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC-----c-eeecCCCCCCCcceeeEeecccccceeeecceEe--ee-cCCeeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR-----G-VYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALV--LA-DMGICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~-----~-~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~--~a-~~gil~iDE 441 (718)
+++|+||||||||++|++++..+.. . ++.... .+..........+. . ..+. .. ..++++|||
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-----~~~~~~~~~~~~~~--~--~~~~~~~~~~~~vL~IDE 202 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-----KFLNDLVDSMKEGK--L--NEFREKYRKKVDILLIDD 202 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-----HHHHHHHHHHHTTC--H--HHHHHHHTTTCSEEEEEC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-----HHHHHHHHHHHccc--H--HHHHHHhcCCCCEEEEeC
Confidence 7999999999999999999987621 1 111100 00000000000000 0 0000 12 467999999
Q ss_pred cccCCh--HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc--eEEEec
Q 005024 442 FDKMDE--SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD--LLWLIL 517 (718)
Q Consensus 442 i~~~~~--~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd--li~~~~ 517 (718)
++.+.. ..+..|+..++.-. .....+|.+++.....+ ..+.++|++||+ +++.
T Consensus 203 i~~l~~~~~~q~~l~~~l~~l~------------~~~~~iIitt~~~~~~l---------~~l~~~L~sR~~~g~~i~-- 259 (440)
T 2z4s_A 203 VQFLIGKTGVQTELFHTFNELH------------DSGKQIVICSDREPQKL---------SEFQDRLVSRFQMGLVAK-- 259 (440)
T ss_dssp GGGGSSCHHHHHHHHHHHHHHH------------TTTCEEEEEESSCGGGC---------SSCCHHHHHHHHSSBCCB--
T ss_pred cccccCChHHHHHHHHHHHHHH------------HCCCeEEEEECCCHHHH---------HHHHHHHHhhccCCeEEE--
Confidence 999986 67777877775310 11233444555332111 148899999996 4432
Q ss_pred cCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcc
Q 005024 518 DRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSY 596 (718)
Q Consensus 518 d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~ 596 (718)
+.+.+.+....++.... .....+++++.++|... ++
T Consensus 260 ----------------------------l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~---------------~~ 296 (440)
T 2z4s_A 260 ----------------------------LEPPDEETRKSIARKMLEIEHGELPEEVLNFVAEN---------------VD 296 (440)
T ss_dssp ----------------------------CCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH---------------CC
T ss_pred ----------------------------eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---------------cC
Confidence 23334444444443322 23346899998888864 57
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 597 TTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 597 ~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
+++|.++++++.+.+.|...+. .|+.+++.+|+.-.
T Consensus 297 gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 297 DNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 9999999999999999987765 69999999988654
No 76
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.18 E-value=1e-10 Score=150.53 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=121.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc-eee--cCCCCCCCcceeeEeecccccceeeecceEeee----cCCeeeecccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG-VYT--TGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLA----DMGICAIDEFD 443 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a----~~gil~iDEi~ 443 (718)
|+||+||||||||++|+.+....+.. +.. ....++...+.. ..... ........|....+ ...|+||||+|
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~-~i~~~-~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILS-ALHRH-TNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHH-HHHHH-BCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred eEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHH-HHHHH-hhhccccCCccccCCCCCceEEEEecccc
Confidence 89999999999999996555544322 211 111111100000 00000 00001112332222 23499999998
Q ss_pred cCChH------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC--CCCCCCCCCcchhcCCChhhhcccceEEE
Q 005024 444 KMDES------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA--WGRYDLRRTPAENINLPPALLSRFDLLWL 515 (718)
Q Consensus 444 ~~~~~------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~--~g~~~~~~~~~~~~~l~~~ll~Rfdli~~ 515 (718)
....+ ....|.+.||.+.+...+.+....+ .++.+|||+||+ .||+ .++++|++||.++.
T Consensus 1347 mp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~----------~l~~rllRrf~vi~- 1414 (2695)
T 4akg_A 1347 LPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRI----------PMSERFTRHAAILY- 1414 (2695)
T ss_dssp CSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCC----------CCCHHHHTTEEEEE-
T ss_pred cccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCc----------cCChhhhheeeEEE-
Confidence 75433 5678899999988877766666666 789999999998 6888 89999999995543
Q ss_pred eccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCc
Q 005024 516 ILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHS 595 (718)
Q Consensus 516 ~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~ 595 (718)
.+.|+.+....|...++..+.... + . .+.+.+.+.+...+.|..++..-.-....++
T Consensus 1415 -i~~P~~~~l~~I~~~il~~~l~~~-------~--------------~-v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY 1471 (2695)
T 4akg_A 1415 -LGYPSGKSLSQIYEIYYKAIFKLV-------P--------------E-FRSYTEPFARASVHLYNECKARYSTGLQSHY 1471 (2695)
T ss_dssp -CCCCTTTHHHHHHHHHHHHHTTSS-------G--------------G-GGGGHHHHHHHHHHHHHHHHHHSCTTTCTTC
T ss_pred -eCCCCHHHHHHHHHHHHHHHhccC-------H--------------H-HHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 488888888888776665442100 0 0 0123444555666667666654211233456
Q ss_pred ccCHHHHHHHHH
Q 005024 596 YTTVRTLLSILR 607 (718)
Q Consensus 596 ~~s~R~l~~lir 607 (718)
..|+|.+-++++
T Consensus 1472 ~FnlRDLsrv~q 1483 (2695)
T 4akg_A 1472 LFSPRELTRLVR 1483 (2695)
T ss_dssp CCCHHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 778888877775
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.18 E-value=2.4e-10 Score=134.79 Aligned_cols=220 Identities=14% Similarity=0.192 Sum_probs=124.5
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCC----------ceeecCCCC
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPR----------GVYTTGRGS 404 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~----------~~~~~~~~~ 404 (718)
...++|++.....+...|...... |+||+||||||||+++++++..+.. .++.....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~------------~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~- 251 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKN------------NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG- 251 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSC------------EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-
T ss_pred CCCccCCHHHHHHHHHHHhccCCC------------CeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH-
Confidence 346889999888877777654221 8999999999999999999987621 11111100
Q ss_pred CCCcceeeEeeccccccee--eec--ceEeeecCCeeeecccccC---------ChHHHHHHHHhhcccEEEEeeCCeEE
Q 005024 405 SGVGLTAAVQRDNVTNEMV--LEG--GALVLADMGICAIDEFDKM---------DESDRTAIHEVMEQQTVSIAKAGITT 471 (718)
Q Consensus 405 ~~~~l~~~~~~~~~~g~~~--~~~--g~l~~a~~gil~iDEi~~~---------~~~~~~~L~~~me~~~i~i~k~g~~~ 471 (718)
.+.+ .....|.+. +.. ..+..+.++++||||++.+ ..+..+.|..+++.+
T Consensus 252 ---~l~~---~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~----------- 314 (758)
T 1r6b_X 252 ---SLLA---GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG----------- 314 (758)
T ss_dssp ------C---CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC-----------
T ss_pred ---HHhc---cccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC-----------
Confidence 0000 001112111 000 0111234689999999998 223344555565532
Q ss_pred EecCceEEEEEeCCCC--CCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCC
Q 005024 472 SLNARTAVLSAANPAW--GRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPL 549 (718)
Q Consensus 472 ~l~~~~~viaa~Np~~--g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~ 549 (718)
++.+|+|+|+.. +.+ .++++|.+||+. +..+.|+.+....+...+...
T Consensus 315 ----~~~~I~at~~~~~~~~~----------~~d~aL~~Rf~~--i~v~~p~~~e~~~il~~l~~~-------------- 364 (758)
T 1r6b_X 315 ----KIRVIGSTTYQEFSNIF----------EKDRALARRFQK--IDITEPSIEETVQIINGLKPK-------------- 364 (758)
T ss_dssp ----CCEEEEEECHHHHHCCC----------CCTTSSGGGEEE--EECCCCCHHHHHHHHHHHHHH--------------
T ss_pred ----CeEEEEEeCchHHhhhh----------hcCHHHHhCceE--EEcCCCCHHHHHHHHHHHHHH--------------
Confidence 467889999763 334 688999999984 334777776666554443321
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHh----cCCCCccHHH
Q 005024 550 EPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARL----RFSETVAQSD 625 (718)
Q Consensus 550 ~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l----~~~~~V~~~d 625 (718)
|. ......+++++.+.+..+.... ......+..+..+++.|.+.+++ .....|+.+|
T Consensus 365 -------~~---~~~~v~~~~~al~~~~~~s~~~---------i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~d 425 (758)
T 1r6b_X 365 -------YE---AHHDVRYTAKAVRAAVELAVKY---------INDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVAD 425 (758)
T ss_dssp -------HH---HHHTCCCCHHHHHHHHHHHHHH---------CTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHH
T ss_pred -------HH---HhcCCCCCHHHHHHHHHHhhhh---------cccccCchHHHHHHHHHHHHHhcccccccCCccCHHH
Confidence 10 1112346666666655442110 01122344566666666666655 2345678888
Q ss_pred HHHHHHHH
Q 005024 626 VDEALRLM 633 (718)
Q Consensus 626 v~~ai~l~ 633 (718)
+..++..+
T Consensus 426 i~~~~~~~ 433 (758)
T 1r6b_X 426 IESVVARI 433 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87776544
No 78
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=3.1e-10 Score=127.40 Aligned_cols=220 Identities=13% Similarity=0.120 Sum_probs=124.3
Q ss_pred CcccccHHHHHHHHHHHhCCcccc----CCCCcc-ccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCC-CCcc
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRK----LKDGMK-IRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSS-GVGL 409 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~----~~~~~~-~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~-~~~l 409 (718)
.+++|++.++..+...+....... ...|.. ....-++||+||||||||++|+++++.+...++....... ...+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 378899998888876665411000 000000 0011279999999999999999999998655443211110 0000
Q ss_pred eeeEeecc-----cccceeee-cceEeeecCCeeeecccccCChHHH---HHHHHhhcccEEEEeeCCeEEEecCceEEE
Q 005024 410 TAAVQRDN-----VTNEMVLE-GGALVLADMGICAIDEFDKMDESDR---TAIHEVMEQQTVSIAKAGITTSLNARTAVL 480 (718)
Q Consensus 410 ~~~~~~~~-----~~g~~~~~-~g~l~~a~~gil~iDEi~~~~~~~~---~~L~~~me~~~i~i~k~g~~~~l~~~~~vi 480 (718)
........ ..+.+... .+......+++++|||++.+....+ ..|+..++.. +..+|
T Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~---------------~~~iI 183 (516)
T 1sxj_A 119 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT---------------STPLI 183 (516)
T ss_dssp HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC---------------SSCEE
T ss_pred HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc---------------CCCEE
Confidence 00000000 00000000 0001123457999999999987666 6777777642 23355
Q ss_pred EEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHH
Q 005024 481 SAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISA 560 (718)
Q Consensus 481 aa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~ 560 (718)
+++|.... ..-+++.+|+ ..+. +.+++.+.+.+++..
T Consensus 184 li~~~~~~------------~~l~~l~~r~-~~i~------------------------------f~~~~~~~~~~~L~~ 220 (516)
T 1sxj_A 184 LICNERNL------------PKMRPFDRVC-LDIQ------------------------------FRRPDANSIKSRLMT 220 (516)
T ss_dssp EEESCTTS------------STTGGGTTTS-EEEE------------------------------CCCCCHHHHHHHHHH
T ss_pred EEEcCCCC------------ccchhhHhce-EEEE------------------------------eCCCCHHHHHHHHHH
Confidence 56664321 1123455555 3332 344556666666654
Q ss_pred H-HhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 005024 561 A-RRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLM 633 (718)
Q Consensus 561 ~-~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~ 633 (718)
. ......+++++.+.|.+. .++++|.+.+++..+.. .+..|+.+++.+++...
T Consensus 221 i~~~~~~~i~~~~l~~la~~---------------s~GdiR~~i~~L~~~~~-----~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 221 IAIREKFKLDPNVIDRLIQT---------------TRGDIRQVINLLSTIST-----TTKTINHENINEISKAW 274 (516)
T ss_dssp HHHHHTCCCCTTHHHHHHHH---------------TTTCHHHHHHHHTHHHH-----HSSCCCTTHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH---------------cCCcHHHHHHHHHHHHh-----cCCCCchHHHHHHHHhh
Confidence 3 233346889998888774 47899999998875422 34679999998887644
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.17 E-value=2.3e-10 Score=134.78 Aligned_cols=217 Identities=15% Similarity=0.159 Sum_probs=126.0
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~~~~ 414 (718)
..++|++.....+...|..+... |+||+||||||||++|+++++.+.+.... ...+.....+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~------------~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKN------------NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSC------------EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred CCccCchHHHHHHHHHHhCCCCC------------CeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---
Confidence 46899999999888888764322 89999999999999999999986221000 000000000000
Q ss_pred ecccccceeeec----ceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCC
Q 005024 415 RDNVTNEMVLEG----GALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRY 490 (718)
Q Consensus 415 ~~~~~g~~~~~~----g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~ 490 (718)
...+.|++...- +....+.++|+||| ...+.++.|+.+|+.+ .+.+|+|+|+..-
T Consensus 245 g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~---------------~v~~I~at~~~~~-- 303 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------ELQCIGATTLDEY-- 303 (758)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SCEEEEECCTTTT--
T ss_pred cccccchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC---------------CEEEEeCCChHHH--
Confidence 011122211110 11112357899999 4556777888888754 4678999998741
Q ss_pred CCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhc--CCCC
Q 005024 491 DLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRL--SPCV 568 (718)
Q Consensus 491 ~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~p~l 568 (718)
...+.++++|.+||.. +..+.|+.+....|.+++...+... ....++.+.+.....++..+ ...+
T Consensus 304 ------~~~~~~d~al~rRf~~--i~v~~p~~~~~~~il~~~~~~~~~~-----~~~~i~~~al~~~~~~s~~~i~~~~~ 370 (758)
T 3pxi_A 304 ------RKYIEKDAALERRFQP--IQVDQPSVDESIQILQGLRDRYEAH-----HRVSITDDAIEAAVKLSDRYISDRFL 370 (758)
T ss_dssp ------HHHHTTCSHHHHSEEE--EECCCCCHHHHHHHHHHTTTTSGGG-----SSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred ------HHHhhccHHHHhhCcE--EEeCCCCHHHHHHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhhcccccCcC
Confidence 1123689999999965 4458888888888887766543211 11237788888888877764 3357
Q ss_pred CHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHH
Q 005024 569 PRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSIL 606 (718)
Q Consensus 569 s~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~li 606 (718)
++.+.+.+.......+-.. ..+|...+.++.-+
T Consensus 371 p~~ai~ll~~a~~~~~~~~-----~~~p~~~~~l~~~~ 403 (758)
T 3pxi_A 371 PDKAIDLIDEAGSKVRLRS-----FTTPPNLKELEQKL 403 (758)
T ss_dssp THHHHHHHHHHHHHHHHHT-----TC--CCTHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhc-----cCCCcchhhHHHHH
Confidence 8888888877665554432 13455555555443
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.17 E-value=8.4e-12 Score=129.73 Aligned_cols=142 Identities=13% Similarity=0.150 Sum_probs=80.7
Q ss_pred ccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEe-------eecCCeeeec
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALV-------LADMGICAID 440 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~-------~a~~gil~iD 440 (718)
....+||+||||||||++|+++|+.+...++..... ++....... +.. .+ ...+. ...++|+|||
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~----~l~~~~~g~--~~~-~i-~~~f~~a~~~~~~~~~~vl~iD 106 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAG----ELESGNAGE--PAK-LI-RQRYREAAEIIRKGNMCCLFIN 106 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHH----HHHCC---H--HHH-HH-HHHHHHHHHHHTTSSCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHH----HhhhccCch--hHH-HH-HHHHHHHHHHHhcCCCeEEEEe
Confidence 334799999999999999999999986554432110 110000000 000 00 00111 1256899999
Q ss_pred ccccCCh-------------HHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhh
Q 005024 441 EFDKMDE-------------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALL 507 (718)
Q Consensus 441 Ei~~~~~-------------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll 507 (718)
|||++.+ ..+..|+++|+..............-..++.||+|||... .++++++
T Consensus 107 EiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-------------~ld~al~ 173 (293)
T 3t15_A 107 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-------------TLYAPLI 173 (293)
T ss_dssp CCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-------------C--CHHH
T ss_pred chhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-------------cCCHHHh
Confidence 9998754 2447899999754322211111122245799999999876 7999999
Q ss_pred c--ccceEEEeccCCChhHHHHHHhhhh
Q 005024 508 S--RFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 508 ~--Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
+ |||.++. .|+.+....|.+.++
T Consensus 174 R~~R~d~~i~---~P~~~~r~~Il~~~~ 198 (293)
T 3t15_A 174 RDGRMEKFYW---APTREDRIGVCTGIF 198 (293)
T ss_dssp HHHHEEEEEE---CCCHHHHHHHHHHHH
T ss_pred CCCCCceeEe---CcCHHHHHHHHHHhc
Confidence 5 9998764 467777777766544
No 81
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.17 E-value=2.6e-10 Score=147.32 Aligned_cols=196 Identities=17% Similarity=0.151 Sum_probs=124.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce-ee--cCCCCCCCcceeeEeecccccceeeec--ceEeeec--C--Ceeeecc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV-YT--TGRGSSGVGLTAAVQRDNVTNEMVLEG--GALVLAD--M--GICAIDE 441 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~g~~~~~~--g~l~~a~--~--gil~iDE 441 (718)
||||+||||||||+++......++... .. ....+++..+.... .. ..++.... |.+..+. | .|+||||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~-e~--~~e~~~~~~~G~~~~p~~~Gk~~VlFiDD 1382 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTF-DH--HCEYKRTPSGETVLRPTQLGKWLVVFCDE 1382 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHH-HH--HEEEEECTTSCEEEEESSTTCEEEEEETT
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHH-hh--cceEEeccCCCcccCCCcCCceEEEEecc
Confidence 899999999999988866555554321 11 11111111111100 00 11122222 6665553 2 3999999
Q ss_pred cccCChH------HHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCC--CCCCCCCCCcchhcCCChhhhcccceE
Q 005024 442 FDKMDES------DRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPA--WGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 442 i~~~~~~------~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~--~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
+|+-..+ ....|+++|+++.+...+.+....+ .++.+|||+||. .|++ .+++++++||-++
T Consensus 1383 iNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr~----------~l~~Rf~r~F~vi 1451 (3245)
T 3vkg_A 1383 INLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGRV----------QLTHRFLRHAPIL 1451 (3245)
T ss_dssp TTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTCC----------CCCHHHHTTCCEE
T ss_pred cCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCCc----------cCCHHHHhhceEE
Confidence 9976644 6788999999998888666666666 799999999998 5777 8999999999775
Q ss_pred EEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHhhHhhhhc
Q 005024 514 WLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSP---CVPRELEEYIAAAYSNIRQEEAKS 590 (718)
Q Consensus 514 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p---~ls~~~~~~l~~~y~~lr~~~~~~ 590 (718)
.+ +.|+.+....|-..++..+. +..| .+.+.+.+...+.|..++..-...
T Consensus 1452 ~i--~~ps~esL~~If~til~~~l-------------------------~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~ 1504 (3245)
T 3vkg_A 1452 LV--DFPSTSSLTQIYGTFNRALM-------------------------KLLPNLRSFADNLTDAMVEFYSESQKRFTPD 1504 (3245)
T ss_dssp EC--CCCCHHHHHHHHHHHHHHHT-------------------------TSCGGGTTSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred Ee--CCCCHHHHHHHHHHHHHHHH-------------------------hhChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 43 78887777666544433221 1112 234566677777777776643212
Q ss_pred CCCCcccCHHHHHHHHH
Q 005024 591 NTPHSYTTVRTLLSILR 607 (718)
Q Consensus 591 ~~~~~~~s~R~l~~lir 607 (718)
...++..|+|.+-++++
T Consensus 1505 ~k~HY~FnLRDLsrv~q 1521 (3245)
T 3vkg_A 1505 IQAHYIYSPRELSRWDR 1521 (3245)
T ss_dssp TSTTCCCCHHHHHHHHH
T ss_pred cCCCccccHHHHHHHHH
Confidence 23456779998888776
No 82
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.14 E-value=2.9e-11 Score=139.98 Aligned_cols=160 Identities=22% Similarity=0.242 Sum_probs=97.6
Q ss_pred CcccccHHHHHHHHHH----HhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCccee
Q 005024 336 PEIYGHEDIKKALLLL----LVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTA 411 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~----l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~ 411 (718)
.+|.|.+.+|..|.-. |.... ...+...+..-+|||+||||||||++|+++|..+...++..... .+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~---~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~----~l~- 275 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPA---LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP----EIM- 275 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCG---GGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHH----HHH-
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHH---HHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhH----Hhh-
Confidence 3677887766665533 32211 11222233334899999999999999999999987665542110 000
Q ss_pred eEeecccccc--eeeecceEeee---cCCeeeecccccCChH-----------HHHHHHHhhcccEEEEeeCCeEEEecC
Q 005024 412 AVQRDNVTNE--MVLEGGALVLA---DMGICAIDEFDKMDES-----------DRTAIHEVMEQQTVSIAKAGITTSLNA 475 (718)
Q Consensus 412 ~~~~~~~~g~--~~~~~g~l~~a---~~gil~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~k~g~~~~l~~ 475 (718)
....|+ ..+. ..+..| ...|+||||+|.+-+. ..+.|+..|+.- .-..
T Consensus 276 ----sk~~gese~~lr-~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~-----------~~~~ 339 (806)
T 3cf2_A 276 ----SKLAGESESNLR-KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-----------KQRA 339 (806)
T ss_dssp ----SSCTTHHHHHHH-HHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC-----------CGGG
T ss_pred ----cccchHHHHHHH-HHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc-----------cccC
Confidence 000110 0000 011111 2569999999987432 234566666521 0124
Q ss_pred ceEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhh
Q 005024 476 RTAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 476 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
++.||||||... .|+++|++ |||..+.+ +.|+.....+|.+..+
T Consensus 340 ~V~VIaaTN~~d-------------~LD~ALrR~GRFd~~I~i-~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 340 HVIVMAATNRPN-------------SIDPALRRFGRFDREVDI-GIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEEEEECSSTT-------------TSCTTTTSTTSSCEEEEC-CCCCHHHHHHHHHHTC
T ss_pred CEEEEEecCChh-------------hcCHHHhCCcccceEEec-CCCCHHHHHHHHHHHh
Confidence 688999999887 79999999 99987654 8888888887766544
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.12 E-value=9.4e-10 Score=116.51 Aligned_cols=178 Identities=12% Similarity=0.067 Sum_probs=111.3
Q ss_pred cHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCcee----ecCCCCC--------CCc
Q 005024 341 HEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVY----TTGRGSS--------GVG 408 (718)
Q Consensus 341 ~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~----~~~~~~~--------~~~ 408 (718)
++.+...+..++..|... . .+||+||||||||++|+++++.+..... .||...+ ...
T Consensus 7 ~~~~~~~l~~~i~~~~~~---~--------a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGH---H--------ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHTTCCC---S--------EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHcCCcc---e--------eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 456666777777766422 0 3999999999999999999987632110 0111000 000
Q ss_pred ceeeEeeccc--cccee---e----e-cc-eEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCce
Q 005024 409 LTAAVQRDNV--TNEMV---L----E-GG-ALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNART 477 (718)
Q Consensus 409 l~~~~~~~~~--~g~~~---~----~-~g-~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~ 477 (718)
+. .-++. +.... + + .. .-..+...|++|||++.|+.+.+++|+..||+. +.++
T Consensus 76 ~~---~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~ 139 (334)
T 1a5t_A 76 YY---TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-------------PAET 139 (334)
T ss_dssp EE---EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTE
T ss_pred EE---EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCe
Confidence 10 00110 00000 0 0 00 001134569999999999999999999999862 3466
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAY 557 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 557 (718)
.+|.++|... .+.+++.||+..+ .+.+++.+.+.++
T Consensus 140 ~~Il~t~~~~-------------~l~~ti~SRc~~~-------------------------------~~~~~~~~~~~~~ 175 (334)
T 1a5t_A 140 WFFLATREPE-------------RLLATLRSRCRLH-------------------------------YLAPPPEQYAVTW 175 (334)
T ss_dssp EEEEEESCGG-------------GSCHHHHTTSEEE-------------------------------ECCCCCHHHHHHH
T ss_pred EEEEEeCChH-------------hCcHHHhhcceee-------------------------------eCCCCCHHHHHHH
Confidence 7777777543 7999999999533 2456777778777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHH
Q 005024 558 ISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRI 608 (718)
Q Consensus 558 i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirl 608 (718)
+.... .+++++.+.+... ..|++|.+.+++..
T Consensus 176 L~~~~----~~~~~~~~~l~~~---------------s~G~~r~a~~~l~~ 207 (334)
T 1a5t_A 176 LSREV----TMSQDALLAALRL---------------SAGSPGAALALFQG 207 (334)
T ss_dssp HHHHC----CCCHHHHHHHHHH---------------TTTCHHHHHHTTSS
T ss_pred HHHhc----CCCHHHHHHHHHH---------------cCCCHHHHHHHhcc
Confidence 76432 5678887777764 46788888777753
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.02 E-value=1.6e-08 Score=110.04 Aligned_cols=304 Identities=14% Similarity=0.141 Sum_probs=163.7
Q ss_pred CCcccccHHHHHHHHHHH-h---CCccccCCCCccccccceeee--cCCCcchHHHHHHHHHHHCCC----------cee
Q 005024 335 APEIYGHEDIKKALLLLL-V---GAPHRKLKDGMKIRGDLHICL--MGDPGVAKSQLLKHIINVAPR----------GVY 398 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l-~---~~~~~~~~~~~~~r~~i~vLl--~G~pGtGKt~la~~i~~~~~~----------~~~ 398 (718)
.+.++|.+.....+...+ . .+.. ...-+++| +|+||+|||++++.+++.+.. .++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~---------~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAG---------LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSC---------BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCC---------CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 356889888666665554 2 2200 00017899 999999999999999877532 122
Q ss_pred ecC-CCCCCCcceeeEee---c--ccccc---eeeec--ceEee-ecCCeeeecccccCCh------HHHHHHHHhhccc
Q 005024 399 TTG-RGSSGVGLTAAVQR---D--NVTNE---MVLEG--GALVL-ADMGICAIDEFDKMDE------SDRTAIHEVMEQQ 460 (718)
Q Consensus 399 ~~~-~~~~~~~l~~~~~~---~--~~~g~---~~~~~--g~l~~-a~~gil~iDEi~~~~~------~~~~~L~~~me~~ 460 (718)
... ...+...+...... . +..+. ..+.. ..+.. ...-+++|||++.+.. +....|.+.+++.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI 171 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc
Confidence 211 11110000000000 0 00000 00000 00000 1123899999998753 4455556666532
Q ss_pred EEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCC---hhhhcccceEEEeccCCChhHHHHHHhhhhhhcc
Q 005024 461 TVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLP---PALLSRFDLLWLILDRADMDSDLEMARHVVYVHQ 537 (718)
Q Consensus 461 ~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~---~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~ 537 (718)
.. .+ ...++.+|+++|... +.+ .+. +.+.+||...+
T Consensus 172 ~~----~~----~~~~v~lI~~~~~~~--------~~~--~l~~~~~~~~~~~~~~i----------------------- 210 (412)
T 1w5s_A 172 PS----RD----GVNRIGFLLVASDVR--------ALS--YMREKIPQVESQIGFKL----------------------- 210 (412)
T ss_dssp CC----TT----SCCBEEEEEEEEETH--------HHH--HHHHHCHHHHTTCSEEE-----------------------
T ss_pred cc----CC----CCceEEEEEEecccc--------HHH--HHhhhcchhhhhcCCee-----------------------
Confidence 00 00 024677888886331 000 122 44555654331
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHH
Q 005024 538 NKESPALGFTPLEPAILRAYISAARR--L-SPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALAR 614 (718)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~~~i~~~~~--~-~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~ 614 (718)
.+.|++.+.+.+++..... . ...+++++.+.+.+.... .....|++|.+..+++.+...|.
T Consensus 211 -------~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~G~p~~~~~l~~~a~~~a~ 274 (412)
T 1w5s_A 211 -------HLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGE---------DKGGDGSARRAIVALKMACEMAE 274 (412)
T ss_dssp -------ECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCG---------GGTSCCCHHHHHHHHHHHHHHHH
T ss_pred -------eeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH---------hccCCCcHHHHHHHHHHHHHHHH
Confidence 2566777777777764322 2 235788888888775310 00011899999999998888888
Q ss_pred hcCCCCccHHHHHHHHHHHh-hhcccccccccccCccchHHHHHHHHHHHHHhcCCCcccHHHHHH----HH-HHcC---
Q 005024 615 LRFSETVAQSDVDEALRLMQ-MSKFSLYSDDRQRSGLDAISDIYSILRDEAARSNKLDVSYAHALN----WI-SRKG--- 685 (718)
Q Consensus 615 l~~~~~V~~~dv~~ai~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~----~~-~~~g--- 685 (718)
.+....|+.+++..|+.... .... ..... ........++.++..+.. .+...++.+++.+ .+ ...|
T Consensus 275 ~~~~~~i~~~~v~~~~~~~~~~~~~--~~~l~--~l~~~~~~~l~aia~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (412)
T 1w5s_A 275 AMGRDSLSEDLVRKAVSENEAASIQ--THELE--ALSIHELIILRLIAEATL-GGMEWINAGLLRQRYEDASLTMYNVKP 349 (412)
T ss_dssp HTTCSSCCHHHHHHHHHHC--------CCSSS--SSCHHHHHHHHHHHHHHH-TTCSSBCHHHHHHHHHHHHHHHSCCCC
T ss_pred HcCCCCCCHHHHHHHHHHHhccchH--HHHHH--cCCHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHHHhhcCCCC
Confidence 77888899999998876543 1111 11110 111222334444443322 2333566666554 34 5556
Q ss_pred CCHHHHHHHHHHHHhcCeEEEeCC
Q 005024 686 YSEAQLKECLEEYAALNVWQIHPH 709 (718)
Q Consensus 686 ~~~~~~~~~l~~l~~~g~i~~~~~ 709 (718)
++...+.+.|+.|.+.|++.....
T Consensus 350 ~~~~~~~~~l~~L~~~gli~~~~~ 373 (412)
T 1w5s_A 350 RGYTQYHIYLKHLTSLGLVDAKPS 373 (412)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCHHHHHHHHHHHHhCCCEEeecc
Confidence 567899999999999999988653
No 85
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.02 E-value=3.5e-10 Score=116.17 Aligned_cols=161 Identities=18% Similarity=0.221 Sum_probs=91.5
Q ss_pred CcccccHHHHHHHHHHHhC---CccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceee-cCCCCCCCccee
Q 005024 336 PEIYGHEDIKKALLLLLVG---APHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYT-TGRGSSGVGLTA 411 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~---~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~-~~~~~~~~~l~~ 411 (718)
.+|.|.+.+|+.|...+.. ....-..-+.... -+++|+||||||||+++++++..++...+. .|.....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~--~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~----- 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTP--AGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN----- 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC--SEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS-----
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC--CeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh-----
Confidence 3677888888777644321 1100000011111 159999999999999999999998654333 2221110
Q ss_pred eEeecccccceeeecceEe-e---ecCCeeeecccccCChH-----------HHHHHHHhhcccEEEEeeCCeEEEecCc
Q 005024 412 AVQRDNVTNEMVLEGGALV-L---ADMGICAIDEFDKMDES-----------DRTAIHEVMEQQTVSIAKAGITTSLNAR 476 (718)
Q Consensus 412 ~~~~~~~~g~~~~~~g~l~-~---a~~gil~iDEi~~~~~~-----------~~~~L~~~me~~~i~i~k~g~~~~l~~~ 476 (718)
...|+....-+.+. . ....++++||++.+... ..+.++..|..+. -...
T Consensus 83 -----~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~ 146 (274)
T 2x8a_A 83 -----MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQ 146 (274)
T ss_dssp -----STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----------STTC
T ss_pred -----hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----------ccCC
Confidence 00010000000000 0 12458999999976321 2233444443221 1224
Q ss_pred eEEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhh
Q 005024 477 TAVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 477 ~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
+.++|++|.+. .+++++++ |||..+.+ +.|+.....+|.+.++
T Consensus 147 ~i~ia~tn~p~-------------~LD~al~r~gRfd~~i~~-~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPD-------------IIDPAILRPGRLDKTLFV-GLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGG-------------GSCHHHHSTTSSCEEEEC-CSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChh-------------hCCHhhcCcccCCeEEEe-CCcCHHHHHHHHHHHH
Confidence 67889999876 78999998 99988764 8899888877766554
No 86
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.96 E-value=2.5e-08 Score=129.18 Aligned_cols=276 Identities=18% Similarity=0.168 Sum_probs=159.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee--cCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT--TGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDES 448 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~ 448 (718)
...+.||+|||||.+++.+|+.+++.+++ |..+... ..... +-.|+ ...|+.+|+|||++++++
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~-----~~~g~-------i~~G~--~~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL-----QAMSR-------IFVGL--CQCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH-----HHHHH-------HHHHH--HHHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH-----HHHHH-------HHhhH--hhcCcEEEehhhhcCCHH
Confidence 45688999999999999999999988665 4333221 11111 11221 124678899999999999
Q ss_pred HHHHHHHhhc---------ccEEEEeeCCeEEEecCceEEEEEeCCCC-CCCCCCCCcchhcCCChhhhcccceEEEecc
Q 005024 449 DRTAIHEVME---------QQTVSIAKAGITTSLNARTAVLSAANPAW-GRYDLRRTPAENINLPPALLSRFDLLWLILD 518 (718)
Q Consensus 449 ~~~~L~~~me---------~~~i~i~k~g~~~~l~~~~~viaa~Np~~-g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d 518 (718)
..+.+.+.+. ..++.+. .|....++..|.+++|+||.+ |+. .||++|.+||-.+. ..
T Consensus 672 vLSvv~~qi~~I~~a~~~~~~~~~~~-~G~~i~l~~~~~vfiTmNpgY~gr~----------eLP~nLk~lFr~v~--m~ 738 (3245)
T 3vkg_A 672 ILSAVSQQIQTIQVALKENSKEVELL-GGKNISLHQDMGIFVTMNPGYAGRS----------NLPDNLKKLFRSMA--MI 738 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCCGGGCC----------CSCHHHHTTEEEEE--CC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEec-CCCEEeecCCeEEEEEeCCCccCcc----------cChHHHHhhcEEEE--Ee
Confidence 9988777554 2333332 277788999999999999974 555 89999999995433 35
Q ss_pred CCChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccC
Q 005024 519 RADMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTT 598 (718)
Q Consensus 519 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s 598 (718)
.||...- .+.+.++.-+ .-...+...+...|.-.+..- +...+....
T Consensus 739 ~Pd~~~i-----------------------------~ei~L~s~Gf--~~a~~La~k~~~~~~l~~e~L--S~Q~HYDfG 785 (3245)
T 3vkg_A 739 KPDREMI-----------------------------AQVMLYSQGF--KTAEVLAGKIVPLFKLCQEQL--SAQSHYDFG 785 (3245)
T ss_dssp SCCHHHH-----------------------------HHHHHHTTTC--SCHHHHHHHHHHHHHHHHHSS--CCCTTCCCS
T ss_pred CCCHHHH-----------------------------HHHHHHHccc--chHHHHHHHHHHHHHHHHHHh--CCCCCCCCC
Confidence 5654332 2222222111 122455666777776655432 234466678
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-ccHHH------------HHHHHHHHhhhcccccccccccCccchHHHHHHHHHHHHH
Q 005024 599 VRTLLSILRISAALARLRFSET-VAQSD------------VDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAA 665 (718)
Q Consensus 599 ~R~l~~lirla~a~A~l~~~~~-V~~~d------------v~~ai~l~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 665 (718)
.|.+.++++.|..+-+-..... ++..| ..+..-++. +..+ ...++...+-...+..+|.+++.
T Consensus 786 LRalKsVL~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illr-alrd---~nlpKl~~~D~plF~~li~DlFP 861 (3245)
T 3vkg_A 786 LRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLN-SIND---TMIPKLVADDIPLIQSLLLDVFP 861 (3245)
T ss_dssp HHHHHHHHHHHHHHHHSCCCC------CHHHHHHHHHHHHHHHHHHHHH-HHHH---TTTTTSCGGGHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccHHHHHHH-HHHH---hccCCCchhhHHHHHHHHHHhCC
Confidence 9999999999887765332110 00011 111111111 1111 11122222233456667777765
Q ss_pred hcCCCcccHHHHHH----HHHHcCCC--HHHHHHHHHHHH----hcCeEEEeCCe
Q 005024 666 RSNKLDVSYAHALN----WISRKGYS--EAQLKECLEEYA----ALNVWQIHPHT 710 (718)
Q Consensus 666 ~~~~~~~~~~~l~~----~~~~~g~~--~~~~~~~l~~l~----~~g~i~~~~~~ 710 (718)
...-....+.++.+ .|.+.|+. +..+.++++-|+ ..|++.+.+.|
T Consensus 862 gv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~g 916 (3245)
T 3vkg_A 862 GSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSG 916 (3245)
T ss_dssp TCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCC
Confidence 44333334444433 45566654 577777777663 44777776554
No 87
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.91 E-value=5.4e-09 Score=124.55 Aligned_cols=208 Identities=16% Similarity=0.224 Sum_probs=114.8
Q ss_pred HHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC----------Cce
Q 005024 328 NKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP----------RGV 397 (718)
Q Consensus 328 ~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~----------~~~ 397 (718)
+.....-...++|++.....+...|..+... |+||+||||||||++++.++..+. ..+
T Consensus 162 ~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~------------~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 229 (854)
T 1qvr_A 162 RLAAEGKLDPVIGRDEEIRRVIQILLRRTKN------------NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229 (854)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHHCSSCC------------CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred HHHhcCCCcccCCcHHHHHHHHHHHhcCCCC------------ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeE
Confidence 3333444456889998888888777655322 899999999999999999998762 112
Q ss_pred eecCCCCCCCcceeeEeecccccceeeec-ceEee----ecCCeeeecccccCC--------hHHHHHHHHhhcccEEEE
Q 005024 398 YTTGRGSSGVGLTAAVQRDNVTNEMVLEG-GALVL----ADMGICAIDEFDKMD--------ESDRTAIHEVMEQQTVSI 464 (718)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~-g~l~~----a~~gil~iDEi~~~~--------~~~~~~L~~~me~~~i~i 464 (718)
+..... .+.+ .....|++...- ..+.. ..+.|+||||++.+. .+..+.|..+++.+
T Consensus 230 ~~l~~~----~l~~---g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~---- 298 (854)
T 1qvr_A 230 VSLQMG----SLLA---GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG---- 298 (854)
T ss_dssp EEECC------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT----
T ss_pred EEeehH----Hhhc---cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC----
Confidence 111110 0100 001111111000 00000 123499999999986 33445677777543
Q ss_pred eeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHhhhhhhccCCCCCCC
Q 005024 465 AKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPAL 544 (718)
Q Consensus 465 ~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~ 544 (718)
++.+|+|+|+... .. +.++++|.+||+.+. .+.|+.+....|.+.++..+...
T Consensus 299 -----------~i~~I~at~~~~~--------~~-~~~d~aL~rRf~~i~--l~~p~~~e~~~iL~~~~~~~~~~----- 351 (854)
T 1qvr_A 299 -----------ELRLIGATTLDEY--------RE-IEKDPALERRFQPVY--VDEPTVEETISILRGLKEKYEVH----- 351 (854)
T ss_dssp -----------CCCEEEEECHHHH--------HH-HTTCTTTCSCCCCEE--ECCCCHHHHHHHHHHHHHHHHHH-----
T ss_pred -----------CeEEEEecCchHH--------hh-hccCHHHHhCCceEE--eCCCCHHHHHHHHHhhhhhhhhh-----
Confidence 4568888986620 01 268899999999743 47888777777777665533111
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhhH
Q 005024 545 GFTPLEPAILRAYISAARRL--SPCVPRELEEYIAAAYSNIRQ 585 (718)
Q Consensus 545 ~~~~~~~~~l~~~i~~~~~~--~p~ls~~~~~~l~~~y~~lr~ 585 (718)
.-..++.+.+...+..+..+ ...+++.+.+.+.+.....|.
T Consensus 352 ~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~ 394 (854)
T 1qvr_A 352 HGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRM 394 (854)
T ss_dssp TTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHh
Confidence 01235667777776666653 224667777777666555554
No 88
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.85 E-value=4.6e-10 Score=107.65 Aligned_cols=147 Identities=15% Similarity=0.174 Sum_probs=85.4
Q ss_pred HHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCc
Q 005024 329 KLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVG 408 (718)
Q Consensus 329 ~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~ 408 (718)
.+...-..+++|++.....+...+..+... ++||+||||||||++++.+++.+......... .+
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~------------~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~----~~ 78 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSRRTKN------------NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSL----KG 78 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTSSSSC------------EEEEESCGGGCHHHHHHHHHHHHHTTCSCTTT----TT
T ss_pred HHhccccchhhcchHHHHHHHHHHhCCCCC------------ceEEECCCCCCHHHHHHHHHHHHHhcCCcchh----cC
Confidence 344445568899999888888777654221 89999999999999999999886321000000 00
Q ss_pred ceeeEee-------ccccccee--eec--ceEeee-cCCeeeecccccCC---------hHHHHHHHHhhcccEEEEeeC
Q 005024 409 LTAAVQR-------DNVTNEMV--LEG--GALVLA-DMGICAIDEFDKMD---------ESDRTAIHEVMEQQTVSIAKA 467 (718)
Q Consensus 409 l~~~~~~-------~~~~g~~~--~~~--g~l~~a-~~gil~iDEi~~~~---------~~~~~~L~~~me~~~i~i~k~ 467 (718)
....... ....+.+. +.. ..+..+ .+.+++|||++.+. .+.+..|...++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~-------- 150 (187)
T 2p65_A 79 RKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR-------- 150 (187)
T ss_dssp CEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--------
T ss_pred CeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--------
Confidence 0000000 00001000 000 001111 23499999999986 4455667676654
Q ss_pred CeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEE
Q 005024 468 GITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLW 514 (718)
Q Consensus 468 g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~ 514 (718)
.++.+|+++|+... .....+++++++||+.+.
T Consensus 151 -------~~~~ii~~~~~~~~--------~~~~~~~~~l~~R~~~i~ 182 (187)
T 2p65_A 151 -------GELRCIGATTVSEY--------RQFIEKDKALERRFQQIL 182 (187)
T ss_dssp -------TCSCEEEEECHHHH--------HHHTTTCHHHHHHEEEEE
T ss_pred -------CCeeEEEecCHHHH--------HHHHhccHHHHHhcCccc
Confidence 25678999996521 011258899999998643
No 89
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.83 E-value=4e-10 Score=108.47 Aligned_cols=162 Identities=17% Similarity=0.267 Sum_probs=89.8
Q ss_pred HHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecC-CCC
Q 005024 326 IYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTG-RGS 404 (718)
Q Consensus 326 ~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~-~~~ 404 (718)
+-+.+...-...++|++.....+...+..+... ++||+||||||||++++++++.+....+... .+.
T Consensus 12 l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~ 79 (195)
T 1jbk_A 12 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKN------------NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGR 79 (195)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSC------------EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTC
T ss_pred HHHHHhhccccccccchHHHHHHHHHHhcCCCC------------ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCC
Confidence 334445555678999999888888777654321 8999999999999999999987632100000 000
Q ss_pred CCCcceeeEee--ccccccee--eec--ceEeeec-CCeeeecccccCCh--------HHHHHHHHhhcccEEEEeeCCe
Q 005024 405 SGVGLTAAVQR--DNVTNEMV--LEG--GALVLAD-MGICAIDEFDKMDE--------SDRTAIHEVMEQQTVSIAKAGI 469 (718)
Q Consensus 405 ~~~~l~~~~~~--~~~~g~~~--~~~--g~l~~a~-~gil~iDEi~~~~~--------~~~~~L~~~me~~~i~i~k~g~ 469 (718)
....+...... ....+.+. +.. ..+..+. +.+++|||++.+.+ ..+..|...++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--------- 150 (195)
T 1jbk_A 80 RVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------- 150 (195)
T ss_dssp EEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT---------
T ss_pred cEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC---------
Confidence 00000000000 00001000 000 0000122 33899999999963 3366676666532
Q ss_pred EEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhH
Q 005024 470 TTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDS 524 (718)
Q Consensus 470 ~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~ 524 (718)
++.+|+++|+.. ......+++++++||+.+ ....|+.++
T Consensus 151 ------~~~~i~~~~~~~--------~~~~~~~~~~l~~r~~~i--~~~~p~~~~ 189 (195)
T 1jbk_A 151 ------ELHCVGATTLDE--------YRQYIEKDAALERRFQKV--FVAEPSVED 189 (195)
T ss_dssp ------SCCEEEEECHHH--------HHHHTTTCHHHHTTEEEE--ECCCCCHHH
T ss_pred ------CeEEEEeCCHHH--------HHHHHhcCHHHHHHhcee--ecCCCCHHH
Confidence 567788888652 011125789999999843 235555443
No 90
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=1.6e-08 Score=105.09 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC------CceeecCCCCCCCcceeeE
Q 005024 340 GHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP------RGVYTTGRGSSGVGLTAAV 413 (718)
Q Consensus 340 g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~------~~~~~~~~~~~~~~l~~~~ 413 (718)
|++++...+..++..|..+ +.||+||||+|||++++++++... ..+...... ........
T Consensus 1 g~~~~~~~L~~~i~~~~~~------------~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~--~~~~~id~ 66 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGI------------SILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE--GENIGIDD 66 (305)
T ss_dssp ---CHHHHHHHHHHTCSSE------------EEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS--SSCBCHHH
T ss_pred ChHHHHHHHHHHHHCCCCc------------EEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC--cCCCCHHH
Confidence 6777777787777766422 899999999999999999987521 011110000 00000000
Q ss_pred eecccccceeeecceEeeecCCeeeecccccCChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCC
Q 005024 414 QRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLR 493 (718)
Q Consensus 414 ~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~ 493 (718)
+++-. ......| ..+...|++|||++.|+.+.+++|+..||+. |.++.+|.+||...
T Consensus 67 ir~li-~~~~~~p---~~~~~kvviIdead~lt~~a~naLLk~LEep-------------~~~t~fIl~t~~~~------ 123 (305)
T 2gno_A 67 IRTIK-DFLNYSP---ELYTRKYVIVHDCERMTQQAANAFLKALEEP-------------PEYAVIVLNTRRWH------ 123 (305)
T ss_dssp HHHHH-HHHTSCC---SSSSSEEEEETTGGGBCHHHHHHTHHHHHSC-------------CTTEEEEEEESCGG------
T ss_pred HHHHH-HHHhhcc---ccCCceEEEeccHHHhCHHHHHHHHHHHhCC-------------CCCeEEEEEECChH------
Confidence 01000 0000000 1234569999999999999999999999963 34566666666443
Q ss_pred CCcchhcCCChhhhcc
Q 005024 494 RTPAENINLPPALLSR 509 (718)
Q Consensus 494 ~~~~~~~~l~~~ll~R 509 (718)
.+.+++.||
T Consensus 124 -------kl~~tI~SR 132 (305)
T 2gno_A 124 -------YLLPTIKSR 132 (305)
T ss_dssp -------GSCHHHHTT
T ss_pred -------hChHHHHce
Confidence 799999999
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.79 E-value=8.1e-10 Score=130.13 Aligned_cols=164 Identities=21% Similarity=0.189 Sum_probs=98.6
Q ss_pred cccccHHHHHHHHHHHhCCcc-ccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEee
Q 005024 337 EIYGHEDIKKALLLLLVGAPH-RKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQR 415 (718)
Q Consensus 337 ~i~g~~~~k~~i~~~l~~~~~-~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (718)
++.|++.+|+.+...+..... ........++..-++||+||||||||++|++++..+...++..... .+.
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~----~l~----- 548 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP----ELL----- 548 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCS----SST-----
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEech----Hhh-----
Confidence 678999999988866643221 1111122233334799999999999999999999986543331110 111
Q ss_pred cccccceeeec-ceEee---ecCCeeeecccccCCh--------------HHHHHHHHhhcccEEEEeeCCeEEEecCce
Q 005024 416 DNVTNEMVLEG-GALVL---ADMGICAIDEFDKMDE--------------SDRTAIHEVMEQQTVSIAKAGITTSLNART 477 (718)
Q Consensus 416 ~~~~g~~~~~~-g~l~~---a~~gil~iDEi~~~~~--------------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~ 477 (718)
....|+....- ..+.. ...+++||||+|.+.. ..++.|+..|+... -..++
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v 617 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNV 617 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CC
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----------ccCCe
Confidence 01111100000 00111 1246999999998632 23456777776321 12468
Q ss_pred EEEEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhhh
Q 005024 478 AVLSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVVY 534 (718)
Q Consensus 478 ~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il~ 534 (718)
.||||||+.. .|++++++ |||..+.+ +.|+.+....|.+..+.
T Consensus 618 ~vI~tTN~~~-------------~ld~allrpgRf~~~i~~-~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 618 FIIGATNRPD-------------IIDPAILRPGRLDQLIYI-PLPDEKSRVAILKANLR 662 (806)
T ss_dssp BCCCCCBSCG-------------GGSCTTSSGGGTTSCCCC-CCCCCSHHHHHTTTTTS
T ss_pred EEEEecCCcc-------------cCCHHHhCccccCceeec-CCCCHHHHHHHHHHHhc
Confidence 8999999886 79999999 99966544 77888877777665553
No 92
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.60 E-value=4.6e-08 Score=115.15 Aligned_cols=164 Identities=19% Similarity=0.204 Sum_probs=95.0
Q ss_pred CcccccHHHHHHHHHHHhCC-ccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEe
Q 005024 336 PEIYGHEDIKKALLLLLVGA-PHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQ 414 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~-~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 414 (718)
.+|.|++.+++.|...+... ..+.......++..-++||+||||||||++|++++..++..++..... .+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~----~l~---- 275 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP----EIM---- 275 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHH----HHS----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEch----Hhh----
Confidence 36888888766665444210 000111111222333899999999999999999999987654331100 000
Q ss_pred ecccccceeeec-ceEe---eecCCeeeecccccCCh-----------HHHHHHHHhhcccEEEEeeCCeEEEecCceEE
Q 005024 415 RDNVTNEMVLEG-GALV---LADMGICAIDEFDKMDE-----------SDRTAIHEVMEQQTVSIAKAGITTSLNARTAV 479 (718)
Q Consensus 415 ~~~~~g~~~~~~-g~l~---~a~~gil~iDEi~~~~~-----------~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~v 479 (718)
....|+....- ..+. ....+++||||++.+.+ ..+..|++.|+... -..++.+
T Consensus 276 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~v 343 (806)
T 1ypw_A 276 -SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIV 343 (806)
T ss_dssp -SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEE
T ss_pred -hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEE
Confidence 00011100000 0000 11356999999987753 23466777776321 1256889
Q ss_pred EEEeCCCCCCCCCCCCcchhcCCChhhhc--ccceEEEeccCCChhHHHHHHhhhh
Q 005024 480 LSAANPAWGRYDLRRTPAENINLPPALLS--RFDLLWLILDRADMDSDLEMARHVV 533 (718)
Q Consensus 480 iaa~Np~~g~~~~~~~~~~~~~l~~~ll~--Rfdli~~~~d~~~~~~d~~i~~~il 533 (718)
|+|+|+.. .+++++.+ ||+..+. ...|+.+....+.....
T Consensus 344 I~atn~~~-------------~ld~al~r~gRf~~~i~-i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPN-------------SIDPALRRFGRFDREVD-IGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTT-------------TSCTTTTSTTSSCEEEC-CCCCCHHHHHHHHHHTT
T ss_pred ecccCCch-------------hcCHHHhcccccccccc-cCCCCHHHHHHHHHHHH
Confidence 99999885 68888887 9986644 47777777766665443
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.24 E-value=1.2e-06 Score=80.96 Aligned_cols=99 Identities=16% Similarity=0.280 Sum_probs=62.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC----ceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR----GVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMD 446 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~ 446 (718)
.++|+||+|+|||+|+++++..... .+|..+.... .. . ...+..+++|||++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~--------------~~------~-~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP--------------LT------D-AAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC--------------CC------G-GGGGCSEEEEESTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh--------------HH------H-HHhCCCEEEEeCccccC
Confidence 7999999999999999999987632 1111111000 00 0 12346799999999998
Q ss_pred hHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccc
Q 005024 447 ESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFD 511 (718)
Q Consensus 447 ~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfd 511 (718)
...+..|.+.++... ..| ...+|.|+|.....+ ...++|.||+.
T Consensus 97 ~~~~~~l~~li~~~~----~~g-------~~~iiits~~~p~~l----------~~~~~L~SRl~ 140 (149)
T 2kjq_A 97 NEEQALLFSIFNRFR----NSG-------KGFLLLGSEYTPQQL----------VIREDLRTRMA 140 (149)
T ss_dssp SHHHHHHHHHHHHHH----HHT-------CCEEEEEESSCTTTS----------SCCHHHHHHGG
T ss_pred hHHHHHHHHHHHHHH----HcC-------CcEEEEECCCCHHHc----------cccHHHHHHHh
Confidence 877888888876321 001 122566777543333 22288999984
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.20 E-value=2.4e-05 Score=82.53 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=36.1
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
+.++|.+.....+...+..|. .++++|++|+|||++++.+++..+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~~--------------~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENYP--------------LTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHCS--------------EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred HhcCChHHHHHHHHHHHhcCC--------------eEEEECCCcCCHHHHHHHHHHHcC
Confidence 357888887777766665432 799999999999999999988764
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.04 E-value=4.5e-06 Score=80.02 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=61.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHH-
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESD- 449 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~- 449 (718)
++|++||||||||++|.++++.+...+..... + .+ .+.+. .+.+..+++|||++...-..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~~fan--s------------~s-~f~l~----~l~~~kIiiLDEad~~~~~~~ 120 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVISFVN--S------------TS-HFWLE----PLTDTKVAMLDDATTTCWTYF 120 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEECCCCC--S------------SS-CGGGG----GGTTCSSEEEEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeEEe--c------------cc-hhhhc----ccCCCCEEEEECCCchhHHHH
Confidence 79999999999999999999986322211000 0 00 00011 12234689999998432111
Q ss_pred HHHHHHhhcccEEEEeeCCe-EEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceE
Q 005024 450 RTAIHEVMEQQTVSIAKAGI-TTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLL 513 (718)
Q Consensus 450 ~~~L~~~me~~~i~i~k~g~-~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli 513 (718)
...+..+|+...+.+.+... .... ....+|.|||-....- ..-..|.||+-.+
T Consensus 121 d~~lrn~ldG~~~~iD~Khr~~~~~-~~~PlIITtN~~~~~~----------~~~~~L~SRi~~f 174 (212)
T 1tue_A 121 DTYMRNALDGNPISIDRKHKPLIQL-KCPPILLTTNIHPAKD----------NRWPYLESRITVF 174 (212)
T ss_dssp HHHCHHHHHTCCEEEC----CCEEE-CCCCEEEEESSCTTSS----------SSCHHHHTSCEEE
T ss_pred HHHHHHHhCCCcccHHHhhcCcccc-CCCCEEEecCCCcccc----------cchhhhhhhEEEE
Confidence 23455566655555531111 1111 1336788899653211 2337899998433
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.02 E-value=3.5e-05 Score=77.40 Aligned_cols=146 Identities=12% Similarity=0.120 Sum_probs=78.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeecccccCChHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDKMDESDR 450 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 450 (718)
+++|+||||||||.++++++..++..--... + ...+.+.+ +.+.-+++.||.... .+.+
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l~G~vn~---~-------------~~~f~l~~----~~~k~i~l~Ee~~~~-~d~~ 164 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPFYGCVNW---T-------------NENFPFND----CVDKMVIWWEEGKMT-AKVV 164 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEECCT---T-------------CSSCTTGG----GSSCSEEEECSCCEE-TTTH
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcccceeec---c-------------cccccccc----ccccEEEEeccccch-hHHH
Confidence 7999999999999999999997643210000 0 00111111 123345566666544 4566
Q ss_pred HHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhhcccceEEEeccCCChhHHHHHHh
Q 005024 451 TAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMAR 530 (718)
Q Consensus 451 ~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~~~~~d~~i~~ 530 (718)
..+..+++-..+.+.........-.++.+|.|||-.-..+-...... .....+|.||. .+|.+....
T Consensus 165 ~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s--~~~~~~L~sR~-~~f~F~~~~---------- 231 (267)
T 1u0j_A 165 ESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTT--FEHQQPLQDRM-FKFELTRRL---------- 231 (267)
T ss_dssp HHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEE--CTTHHHHHTTE-EEEECCSCC----------
T ss_pred HHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccc--hhhhHHHhhhE-EEEECCCcC----------
Confidence 67888887665555321111112245678888997532210000000 14557899998 444331111
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 005024 531 HVVYVHQNKESPALGFTPLEPAILRAYISAAR 562 (718)
Q Consensus 531 ~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 562 (718)
..++.+++.+.++.++..++
T Consensus 232 ------------p~~~~~lt~~~~~~f~~w~~ 251 (267)
T 1u0j_A 232 ------------DHDFGKVTKQEVKDFFRWAK 251 (267)
T ss_dssp ------------CTTSCCCCHHHHHHHHHHHH
T ss_pred ------------CcccCCCCHHHHHHHHHHHH
Confidence 11245688889999888664
No 97
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.95 E-value=2.2e-05 Score=83.01 Aligned_cols=178 Identities=11% Similarity=0.038 Sum_probs=111.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC-C---c--eeecCCCCCCCcceeeEeecccccceeeecceEeeecCCeeeeccccc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP-R---G--VYTTGRGSSGVGLTAAVQRDNVTNEMVLEGGALVLADMGICAIDEFDK 444 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~-~---~--~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~g~l~~a~~gil~iDEi~~ 444 (718)
..||+||+|+||++.++.+++.+. . . .+..+.. ..+ ++- ... .....+ .++..+++|||.+.
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~-----~~l-~~~--~~~~pl-f~~~kvvii~~~~~ 87 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN---TDW-----NAI-FSL--CQAMSL-FASRQTLLLLLPEN 87 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT---CCH-----HHH-HHH--HHHHHH-CCSCEEEEEECCSS
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC---CCH-----HHH-HHH--hcCcCC-ccCCeEEEEECCCC
Confidence 688999999999999999887641 0 0 1100000 000 000 000 000111 23456999999999
Q ss_pred -CChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCC-CC--CCCCCCCCcchhcCCChhhhcccceEEEeccCC
Q 005024 445 -MDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANP-AW--GRYDLRRTPAENINLPPALLSRFDLLWLILDRA 520 (718)
Q Consensus 445 -~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np-~~--g~~~~~~~~~~~~~l~~~ll~Rfdli~~~~d~~ 520 (718)
++.+.+++|+..+|+- |..+.+|.+++. .. .+. .+.+++.+|+- ++.
T Consensus 88 kl~~~~~~aLl~~le~p-------------~~~~~~il~~~~~~~~~~~~----------k~~~~i~sr~~-~~~----- 138 (343)
T 1jr3_D 88 GPNAAINEQLLTLTGLL-------------HDDLLLIVRGNKLSKAQENA----------AWFTALANRSV-QVT----- 138 (343)
T ss_dssp CCCTTHHHHHHHHHTTC-------------BTTEEEEEEESCCCTTTTTS----------HHHHHHTTTCE-EEE-----
T ss_pred CCChHHHHHHHHHHhcC-------------CCCeEEEEEcCCCChhhHhh----------HHHHHHHhCce-EEE-----
Confidence 9999999999999852 334555544442 21 111 57788999984 332
Q ss_pred ChhHHHHHHhhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCH
Q 005024 521 DMDSDLEMARHVVYVHQNKESPALGFTPLEPAILRAYISAAR-RLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTV 599 (718)
Q Consensus 521 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~ 599 (718)
+.+++.+.+.+++...- +..-.+++++.+.|.+. ..++.
T Consensus 139 -------------------------~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~---------------~~gdl 178 (343)
T 1jr3_D 139 -------------------------CQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC---------------YEGNL 178 (343)
T ss_dssp -------------------------ECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHS---------------STTCH
T ss_pred -------------------------eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------hchHH
Confidence 23444556666665543 34446899999999884 57899
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 600 RTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 600 R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
|.+.+.+.-....+ ....||.+||...+..
T Consensus 179 ~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 179 LALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 99999887554443 3567999999887654
No 98
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.84 E-value=3e-06 Score=80.75 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=56.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecCCCCCCCcceeeEeecccccc---eeeecceEeeecCCeeeecccc--cC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQRDNVTNE---MVLEGGALVLADMGICAIDEFD--KM 445 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~---~~~~~g~l~~a~~gil~iDEi~--~~ 445 (718)
+++|+||||||||+++++++..+... .|.... -++........... .......-.+.+..+++|||++ .+
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~ 114 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEK---KGIRGY--FFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERL 114 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHH---SCCCCC--EEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---cCCeEE--EEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcC
Confidence 79999999999999999999876210 011000 00000000000000 0000000112356899999998 56
Q ss_pred ChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCC
Q 005024 446 DESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWG 488 (718)
Q Consensus 446 ~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g 488 (718)
++..+..|.+.++... .....+|.|+|....
T Consensus 115 ~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 115 SDWQRELISYIITYRY------------NNLKSTIITTNYSLQ 145 (180)
T ss_dssp CHHHHHHHHHHHHHHH------------HTTCEEEEECCCCSC
T ss_pred CHHHHHHHHHHHHHHH------------HcCCCEEEEcCCChh
Confidence 7777778888775421 124577888987643
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.69 E-value=0.0015 Score=68.67 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=30.2
Q ss_pred cHHHHHHHHH-HcC--CCHHHHHHHHHHHHhcCeEEEeCCe
Q 005024 673 SYAHALNWIS-RKG--YSEAQLKECLEEYAALNVWQIHPHT 710 (718)
Q Consensus 673 ~~~~l~~~~~-~~g--~~~~~~~~~l~~l~~~g~i~~~~~~ 710 (718)
+..++.+.+. ..| ++..++.+.|+.|.+.|++...++.
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~ 344 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEK 344 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSC
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCE
Confidence 6777766553 457 8999999999999999999887643
No 100
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.51 E-value=0.00018 Score=69.41 Aligned_cols=122 Identities=13% Similarity=0.074 Sum_probs=66.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHC--------C-CceeecCCCCCCCcceeeEe-e-c--ccccceeeecce---E-eeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA--------P-RGVYTTGRGSSGVGLTAAVQ-R-D--NVTNEMVLEGGA---L-VLAD 433 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~--------~-~~~~~~~~~~~~~~l~~~~~-~-~--~~~g~~~~~~g~---l-~~a~ 433 (718)
-.|++|+||+|||+++....... + +.+|.++......+...... + . ...++- ..+.. + ..+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQ-LSAHDMYEWIKKPE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSC-EEGGGHHHHTTSGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCccc-ccHHHHHHHhhccc
Confidence 57899999999999987764433 2 55554332111111110000 0 0 000000 00000 0 0133
Q ss_pred --CCeeeecccccCCh---HH--HHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhh
Q 005024 434 --MGICAIDEFDKMDE---SD--RTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPAL 506 (718)
Q Consensus 434 --~gil~iDEi~~~~~---~~--~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~l 506 (718)
+.+++|||.+.+-+ +. ...++..++... .....+|.++++.. .|+.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~~~-------------~l~~~l 140 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQGPK-------------LLDQNL 140 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESCGG-------------GBCHHH
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCCHH-------------HHhHHH
Confidence 78999999999822 11 123555554321 22456677788754 789999
Q ss_pred hcccceEEEecc
Q 005024 507 LSRFDLLWLILD 518 (718)
Q Consensus 507 l~Rfdli~~~~d 518 (718)
.+|++..+.+..
T Consensus 141 r~ri~~~~~l~~ 152 (199)
T 2r2a_A 141 RTLVRKHYHIAS 152 (199)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHhheEEEEcC
Confidence 999998887754
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.33 E-value=2.1e-05 Score=81.76 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=22.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
+++|+||||||||+||.+++..+.
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998764
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.97 E-value=0.00055 Score=65.24 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=20.8
Q ss_pred CCeeeecccccCChHHHHHHHHhhcc
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQ 459 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~ 459 (718)
..+++|||+..++++....|...+++
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHC
Confidence 45999999999987777777767765
No 103
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.49 E-value=0.0064 Score=59.25 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.0
Q ss_pred cccceeeecCCCcchHHHHHHHHHHHC
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
||.++|++.|+||+|||+++-.++..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 677799999999999999987777554
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.39 E-value=0.0058 Score=67.05 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=48.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC---C-ceee-cCCCCCC------CcceeeEe--------e-cccccceeeecceEe
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP---R-GVYT-TGRGSSG------VGLTAAVQ--------R-DNVTNEMVLEGGALV 430 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~---~-~~~~-~~~~~~~------~~l~~~~~--------~-~~~~g~~~~~~g~l~ 430 (718)
++++.|+||||||+++.+++..+. . .+.. +..+..+ .+..+.-. . ......+.. .....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~-~~~~~ 125 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQ-KEVPD 125 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEE-CSCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcc-ccccc
Confidence 799999999999999998887652 1 1111 1111000 01110000 0 000000100 11112
Q ss_pred eecCCeeeecccccCChHHHHHHHHhhc
Q 005024 431 LADMGICAIDEFDKMDESDRTAIHEVME 458 (718)
Q Consensus 431 ~a~~gil~iDEi~~~~~~~~~~L~~~me 458 (718)
+....+++|||+..++...+..|...+.
T Consensus 126 ~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 126 LAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp CSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred ccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 2345799999999999998888888875
No 105
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.27 E-value=0.0075 Score=68.56 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHC
Q 005024 341 HEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 341 ~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.-+.|+..++-++ .+++.|+||||||+++.++...+
T Consensus 151 ~~~Q~~Ai~~~l~~~---------------~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 151 INWQKVAAAVALTRR---------------ISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp CCHHHHHHHHHHTBS---------------EEEEECCTTSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC---------------CEEEEeCCCCCHHHHHHHHHHHH
Confidence 344566666666443 79999999999999888776543
No 106
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.24 E-value=0.0032 Score=70.99 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=46.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC---Cceee-cCCCCCCC------cceeeEeeccc--ccceeeecceEeeecCCeee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP---RGVYT-TGRGSSGV------GLTAAVQRDNV--TNEMVLEGGALVLADMGICA 438 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~---~~~~~-~~~~~~~~------~l~~~~~~~~~--~g~~~~~~g~l~~a~~gil~ 438 (718)
.+++.|+||||||+++..+...+. ..+.. +..+..+. +..+....... .+. .+....-...+..+++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~-~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ-GFRHNHLEPAPYDLLI 284 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT-EESCSSSSCCSCSEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc-hhhhhhcccccCCEEE
Confidence 799999999999999999887652 11211 11110000 00010000000 000 0000000111357999
Q ss_pred ecccccCChHHHHHHHHhhc
Q 005024 439 IDEFDKMDESDRTAIHEVME 458 (718)
Q Consensus 439 iDEi~~~~~~~~~~L~~~me 458 (718)
|||+.+++......|++++.
T Consensus 285 IDEasml~~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 285 VDEVSMMGDALMLSLLAAVP 304 (574)
T ss_dssp ECCGGGCCHHHHHHHHTTSC
T ss_pred EcCccCCCHHHHHHHHHhCc
Confidence 99999999988888887775
No 107
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.21 E-value=0.0026 Score=61.23 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+++|+||||||||++|++++..+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999876
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.28 E-value=0.0099 Score=55.66 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
.|+|+|+||+|||++++.+++.++...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~ 31 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPW 31 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 589999999999999999999986543
No 109
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.03 E-value=0.013 Score=54.46 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.|.|+|+||+|||++++.++..++.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999998754
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.97 E-value=0.012 Score=55.39 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|+|+||+|||++++.+++.++..++
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999998754443
No 111
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.88 E-value=0.013 Score=56.91 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|+|+||+|||++++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 6899999999999999999988765444
No 112
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.83 E-value=0.011 Score=55.40 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|+|+||+|||++++.+++.++..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 6899999999999999999998764433
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.80 E-value=0.015 Score=53.86 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=23.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
.|+|.|+||+|||++++.+++.++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~ 29 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPI 29 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 589999999999999999998865433
No 114
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.74 E-value=0.015 Score=53.96 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=24.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|.|.||+|||++++.+++.+...++
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 8999999999999999999998765444
No 115
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.65 E-value=0.017 Score=55.40 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
.|+|+|+||+|||++++.+++.++..+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 799999999999999999998875443
No 116
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.64 E-value=0.019 Score=56.06 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=19.5
Q ss_pred cccceeeecCCCcchHHHHHHHHHHHC
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+|.+ ++++|+||+|||+++..++..+
T Consensus 11 ~G~i-~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWI-EFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEE-EEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEE-EEEECCCCCcHHHHHHHHHHHH
Confidence 4444 7889999999999776665444
No 117
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.58 E-value=0.014 Score=56.45 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=25.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
.|+|.||||+||++.++.+++...-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 589999999999999999999876554443
No 118
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.50 E-value=0.014 Score=54.74 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|+|+||+|||++++.+++.++..++
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 7999999999999999999988755443
No 119
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.50 E-value=0.061 Score=53.10 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
+++++||+|+|||.++..++....
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcC
Confidence 699999999999999988877663
No 120
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.50 E-value=0.036 Score=55.39 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=22.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++|+|+||+|||++++.++..++
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999999875
No 121
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.48 E-value=0.019 Score=54.21 Aligned_cols=27 Identities=22% Similarity=0.328 Sum_probs=23.4
Q ss_pred eeeecCCCcchHHHHHHHHHHH-CCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINV-APRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~-~~~~~ 397 (718)
+|+|+|+||+|||++++.+++. ++..+
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g~~~ 39 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDGFQH 39 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 7999999999999999999998 44333
No 122
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.42 E-value=0.016 Score=56.23 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=23.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|.|+||+|||++++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 6899999999999999999887654433
No 123
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.32 E-value=0.02 Score=53.09 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=22.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|+|+||+|||++++.+ +.++..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 5899999999999999999 66654443
No 124
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.28 E-value=0.021 Score=53.76 Aligned_cols=24 Identities=38% Similarity=0.703 Sum_probs=22.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
++.|+||+|+|||+|++.++..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
No 125
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.27 E-value=0.028 Score=53.78 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=23.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|+|+||+|||++++.+++.++..++
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i 49 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQI 49 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 6999999999999999999987654433
No 126
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.25 E-value=0.025 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=22.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||++++.++...+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999875
No 127
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.18 E-value=0.02 Score=55.73 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
.|+|+|+||+|||++++.+++.+...+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~~~ 32 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHAAH 32 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceE
Confidence 799999999999999999999875443
No 128
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.15 E-value=0.019 Score=54.08 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=23.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|+|+||+|||++++.+++.++..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLL 31 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 5899999999999999999998654443
No 129
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.14 E-value=0.021 Score=53.31 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.9
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
.|+|.|+||+|||++++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999998
No 130
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.05 E-value=0.03 Score=58.92 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++++||+|+|||++++++....+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 699999999999999999988763
No 131
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.04 E-value=0.05 Score=55.43 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++|.|+||+|||++++.++..++
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998874
No 132
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.00 E-value=0.028 Score=56.16 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=23.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.++|+|+||+|||++++.+++.++..++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i 30 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVV 30 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEE
Confidence 4789999999999999999988765444
No 133
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.98 E-value=0.021 Score=53.85 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
.|+|+|+||+|||++++.+++.++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 69999999999999999999876543
No 134
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.92 E-value=0.028 Score=51.90 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=23.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|.|+||+|||++++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6899999999999999999997654433
No 135
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.86 E-value=0.03 Score=53.55 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=22.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||++++.++...|
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999876
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.86 E-value=0.028 Score=52.72 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=20.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|.|+||+|||++++.+++.++..++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 6999999999999999999998765544
No 137
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.81 E-value=0.029 Score=52.06 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=23.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|.|+||+|||++++.+++.++..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999998654443
No 138
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.79 E-value=0.029 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.|+|+|+||+|||++++.+++.++.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5999999999999999999988643
No 139
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.76 E-value=0.028 Score=55.84 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=24.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
.|+|.|+||+|||++++.+++.++...+.
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 79999999999999999999876654443
No 140
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.69 E-value=0.026 Score=53.41 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
.|+|.|+||+|||++++.+++.++..+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~ 31 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTH 31 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 689999999999999999998765433
No 141
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.63 E-value=0.034 Score=52.63 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.|+|+|+||+|||++++.+++.++.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999999987643
No 142
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.63 E-value=0.033 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
-+.|+||+|+|||++++.++...+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4889999999999999999998764
No 143
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.61 E-value=0.024 Score=54.93 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|.|+||+|||++++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i 29 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQI 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 6899999999999999999987654443
No 144
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.54 E-value=0.034 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++|+|+||+|||++++.++..++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999998754
No 145
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.54 E-value=0.027 Score=54.85 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=23.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
-|+|.||||+||++.++.+++.+.-...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 4788999999999999999998754433
No 146
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.51 E-value=0.028 Score=53.32 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|.|+|+||+|||++++.+++.++..++
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 6999999999999999999987765443
No 147
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.49 E-value=0.044 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||.|+|||+|++.++..+|
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 488999999999999999999874
No 148
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.48 E-value=0.03 Score=55.11 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+|+|.|+||+|||++++.+++.+...++
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 45 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHL 45 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 7999999999999999999988754443
No 149
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=93.40 E-value=0.18 Score=39.98 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEeCCee
Q 005024 651 DAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTF 711 (718)
Q Consensus 651 ~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~~~ 711 (718)
+....|++.|++......+...+..+| |+..|++..++.+.|..|++.|+|....+++
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EI---a~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDI---ADAAGLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHH---HHHHCCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 455678888888766651224555554 6677999999999999999999999987654
No 150
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.40 E-value=0.037 Score=53.00 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|++|+|||++++.++..++
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999998764
No 151
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.35 E-value=0.033 Score=54.48 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|+|+||+|||++++.+++.++...+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 6999999999999999999988754433
No 152
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.30 E-value=0.041 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.++|+|+||+|||++++.++..++.
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCcc
Confidence 5899999999999999999998753
No 153
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.29 E-value=0.041 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+|++|+|||++++.++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999998754
No 154
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.29 E-value=0.034 Score=54.25 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|.|+|++|+|||++++.+++.++....
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 6899999999999999999987654433
No 155
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.28 E-value=0.034 Score=54.35 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=23.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|.|+||+|||++++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 5899999999999999999987654333
No 156
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.24 E-value=0.033 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|+||+|||++++.++...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998763
No 157
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.22 E-value=0.031 Score=54.39 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|.|+||+|||++++.+++.+...++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 34 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHL 34 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEE
Confidence 7999999999999999999998754443
No 158
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.20 E-value=0.042 Score=52.58 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=24.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|.|+||+|||++++.+++.++..++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i 44 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHL 44 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 6899999999999999999988765443
No 159
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.15 E-value=0.03 Score=53.26 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
.|.|+|+||+|||++++.+++.++..+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 40 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTH 40 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 699999999999999999999875443
No 160
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.15 E-value=0.041 Score=54.85 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|.|+|++|+|||++++.++..+...++
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 7999999999999999999998765443
No 161
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.14 E-value=0.039 Score=51.98 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=22.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.|+|.|+||+|||++++.+++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999998764
No 162
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.12 E-value=0.029 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.|+|.|+||+|||++++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 163
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.08 E-value=0.046 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.|.|.|+||+|||++++.+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999998754
No 164
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.99 E-value=0.033 Score=52.61 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=23.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|+|+|+||+|||++++.+++.++..++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 5899999999999999999987654433
No 165
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.97 E-value=0.055 Score=51.17 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=23.5
Q ss_pred cccccceeeecCCCcchHHHHHHHHHHH
Q 005024 365 KIRGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 365 ~~r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..+..++|+++|++|+|||+|+.++...
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3445669999999999999999988765
No 166
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.93 E-value=0.049 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||++++.++...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999999887
No 167
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.85 E-value=0.039 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=21.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||++++.++..+
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 168
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.81 E-value=0.039 Score=54.75 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|+||+|||++++.+++.+.
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999997653
No 169
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.75 E-value=0.032 Score=54.41 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=22.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.|+|.|+||+|||++++.+++.++.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999988754
No 170
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.75 E-value=0.044 Score=52.65 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=22.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.|+|.|+||+|||++++.+++.++
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 171
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.72 E-value=0.049 Score=55.99 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.8
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+||||+|||+|+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4789999999999999999875
No 172
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.61 E-value=0.063 Score=51.69 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++...+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999986
No 173
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.60 E-value=0.051 Score=53.43 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
+.+.|.||||+|||++++.+++.+....+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 37999999999999999999988754433
No 174
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.57 E-value=0.073 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
+++|+|+||+|||++++.++..+...
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 79999999999999999999987543
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.49 E-value=0.071 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=22.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
-+.|+||+|+|||+|++.+.+..+.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCc
Confidence 4889999999999999999998763
No 176
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.46 E-value=0.018 Score=61.92 Aligned_cols=26 Identities=15% Similarity=-0.101 Sum_probs=21.3
Q ss_pred CCeeeecccccCChHHHHHHHHhhcc
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVMEQ 459 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me~ 459 (718)
..+++|||+.+++.....+++.+...
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCCC
Confidence 57999999999998888777776643
No 177
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.45 E-value=0.087 Score=49.82 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=23.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
.|.|+||+|+|||+|++.+.+..|..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 58999999999999999998887754
No 178
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.41 E-value=0.069 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++...+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 488999999999999999999876
No 179
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.25 E-value=0.074 Score=48.77 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=21.8
Q ss_pred cccceeeecCCCcchHHHHHHHHHHH
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+..++|+++|++|+|||+|+..+...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34458999999999999999988653
No 180
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.24 E-value=0.055 Score=50.40 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.0
Q ss_pred eeeecCCCcchHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHI 389 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i 389 (718)
-+.|+||+|+|||++++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3889999999999999973
No 181
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.14 E-value=0.077 Score=51.58 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++...|
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999875
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.05 E-value=0.068 Score=50.47 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||++++.++...+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 377899999999999999999876
No 183
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.96 E-value=0.076 Score=52.91 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=25.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeecC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTTG 401 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~~ 401 (718)
.|.|+|++|+|||++++.+++.+....+..|
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g 59 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSG 59 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence 6899999999999999999988765544433
No 184
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.91 E-value=0.068 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
.|.|+|++|+|||++++.++. +...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~ 27 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAY 27 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCE
Confidence 589999999999999999999 6433
No 185
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.90 E-value=0.093 Score=54.12 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=25.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
.|+|+||||+|||++++.+++.++..++.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis 35 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELIS 35 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEe
Confidence 58999999999999999999998754444
No 186
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.88 E-value=0.11 Score=59.52 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHH-HHHHHHC
Q 005024 343 DIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLL-KHIINVA 393 (718)
Q Consensus 343 ~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la-~~i~~~~ 393 (718)
.-+.|+..+|.... -.|+.||||||||+++ ..|..+.
T Consensus 193 ~Q~~AV~~al~~~~--------------~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 193 SQKEAVLFALSQKE--------------LAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp HHHHHHHHHHHCSS--------------EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--------------ceEEECCCCCCHHHHHHHHHHHHH
Confidence 34677777775432 4789999999999755 4444443
No 187
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.87 E-value=0.075 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++|+|+||+|||++++.++..++
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 188
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.82 E-value=0.085 Score=50.31 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.|.|.|+||+|||++++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999987
No 189
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.80 E-value=0.087 Score=50.81 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=19.5
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
-++|+|+||+|||++++.++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 190
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.79 E-value=0.087 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+||||+|||++++.++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998553
No 191
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.78 E-value=0.099 Score=52.32 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.|+|+|+||+|||++++.+++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 192
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.78 E-value=0.08 Score=52.23 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.5
Q ss_pred eeeecCCCcchHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~ 390 (718)
-+.|+||+|+|||+|++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48899999999999999988
No 193
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.59 E-value=0.1 Score=53.85 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=47.6
Q ss_pred cccCChHHHHHHHHHhhC------hhHHHHHHhhcCCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCc
Q 005024 306 EYELRGDEEEHISRLAED------GDIYNKLARSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPG 379 (718)
Q Consensus 306 ~~~~~~~~~~~i~~~~~~------~~~~~~l~~si~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pG 379 (718)
...+|+++++.+..+... .++|-.++..+.-. +|....-..+...+.++... +...-+.|.|++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~-~~~~~~l~~~~~~~l~~~~~--------~~p~iigI~GpsG 102 (321)
T 3tqc_A 32 PLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFY-VTARQTLQQATYQFLGKPEP--------KVPYIIGIAGSVA 102 (321)
T ss_dssp -CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHH-HHHHHHHHHHHHHHHTCCCC--------CCCEEEEEECCTT
T ss_pred CCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHhccCCC--------CCCEEEEEECCCC
Confidence 455788888877655421 13455555444333 33333333444444444211 1122588999999
Q ss_pred chHHHHHHHHHHHCC
Q 005024 380 VAKSQLLKHIINVAP 394 (718)
Q Consensus 380 tGKt~la~~i~~~~~ 394 (718)
+|||++++.++..+.
T Consensus 103 SGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 103 VGKSTTSRVLKALLS 117 (321)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998864
No 194
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.57 E-value=0.074 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=22.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+||+|+|||+|++.+....+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 589999999999999999998765
No 195
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.52 E-value=0.1 Score=50.29 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-+.|+||+|+|||+|++.++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999988
No 196
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.51 E-value=0.095 Score=49.60 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=21.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-|.|.|++|+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999886
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.41 E-value=0.085 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||+|+|||+|++.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999999754
No 198
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.38 E-value=0.099 Score=51.31 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=20.1
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-++|+||||+|||++++.++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999874
No 199
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.37 E-value=0.091 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++|+||+|+|||++++.+....+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 799999999999999999988764
No 200
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.35 E-value=0.091 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.|.|.|+||+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999875
No 201
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.33 E-value=0.08 Score=50.60 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=24.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
.|.|.|++|+|||++++.+++.++..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 58999999999999999999987655444
No 202
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.29 E-value=0.11 Score=49.88 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCc
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRG 396 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~ 396 (718)
.+.|+|++|+|||++++.++. ++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~ 28 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVP 28 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 588999999999999999987 4433
No 203
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.20 E-value=0.13 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+||+|+|||+|++.++...
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999999986
No 204
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.19 E-value=0.088 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++..++
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999998874
No 205
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.13 E-value=0.097 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=19.7
Q ss_pred ceeeecCCCcchHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~ 391 (718)
++|+++|+||+|||+|+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998864
No 206
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.09 E-value=0.15 Score=52.83 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=25.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
.|+|+||+|+|||+|+..+++.++..+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 58999999999999999999998754444
No 207
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.08 E-value=0.085 Score=50.19 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=22.4
Q ss_pred CCCccccccceeeecCCCcchHHHHHHHHHHH
Q 005024 361 KDGMKIRGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 361 ~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..|+.....++|+++|++|+|||+|++.+...
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34455556679999999999999999998764
No 208
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.07 E-value=0.14 Score=56.54 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=23.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
+++++||+|+|||++++++....+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 7999999999999999999998864
No 209
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.05 E-value=0.1 Score=49.09 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=23.3
Q ss_pred ccccccceeeecCCCcchHHHHHHHHHHH
Q 005024 364 MKIRGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 364 ~~~r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
...+..++|+++|++|+|||+|+..+...
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 34456679999999999999999988754
No 210
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.03 E-value=0.1 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.3
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999888754
No 211
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.01 E-value=0.049 Score=51.80 Aligned_cols=52 Identities=10% Similarity=0.181 Sum_probs=37.7
Q ss_pred CCeeeeccccc------CChHHHHHHHHhhcccEEEEeeCCeEEEecCceEEEEEeCCCCCCCCCCCCcchhcCCChhhh
Q 005024 434 MGICAIDEFDK------MDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLSAANPAWGRYDLRRTPAENINLPPALL 507 (718)
Q Consensus 434 ~gil~iDEi~~------~~~~~~~~L~~~me~~~i~i~k~g~~~~l~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~~ll 507 (718)
-.+++|||++. ++.+ .+++++.+. |.+..||.|.| .-|+.|+
T Consensus 121 yDlvILDEi~~al~~g~l~~~---ev~~~l~~R-------------p~~~~vIlTGr----------------~ap~~l~ 168 (196)
T 1g5t_A 121 LDMVVLDELTYMVAYDYLPLE---EVISALNAR-------------PGHQTVIITGR----------------GCHRDIL 168 (196)
T ss_dssp CSEEEEETHHHHHHTTSSCHH---HHHHHHHTS-------------CTTCEEEEECS----------------SCCHHHH
T ss_pred CCEEEEeCCCccccCCCCCHH---HHHHHHHhC-------------cCCCEEEEECC----------------CCcHHHH
Confidence 46999999953 4433 355666532 55678888888 6788999
Q ss_pred cccceEEEec
Q 005024 508 SRFDLLWLIL 517 (718)
Q Consensus 508 ~Rfdli~~~~ 517 (718)
..-|++--+.
T Consensus 169 e~AD~VTem~ 178 (196)
T 1g5t_A 169 DLADTVSELR 178 (196)
T ss_dssp HHCSEEEECC
T ss_pred HhCcceeeec
Confidence 9999997653
No 212
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.96 E-value=0.097 Score=50.33 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.|.|+|+||+|||++++.+++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999875
No 213
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.92 E-value=0.09 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=21.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.|.|.|+||+|||++++.+++.+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999875
No 214
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.90 E-value=0.11 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.6
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 48999999999999999998754
No 215
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.82 E-value=0.36 Score=47.27 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.7
Q ss_pred cceeeecCCCcchHHHHHHHHHHHC
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+|+|++|+|||+|+.++....
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 4589999999999999999987653
No 216
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.72 E-value=0.11 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=20.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988754
No 217
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.71 E-value=0.081 Score=51.81 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=15.1
Q ss_pred eeeecCCCcchHHHHHHHHH-HHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHII-NVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~-~~~~~ 395 (718)
-+.|+||+|+|||++++.++ ...+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 47899999999999999999 87653
No 218
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.67 E-value=0.12 Score=47.79 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=21.4
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++|+++|++|+|||+|+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999888754
No 219
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.63 E-value=0.11 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.0
Q ss_pred ceeeecCCCcchHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~ 391 (718)
++|+++|++|+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999998875
No 220
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.59 E-value=0.14 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.1
Q ss_pred ceeeecCCCcchHHHHHHHHHHHCCC
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
..|.|.|++|+|||++++.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 36999999999999999999998753
No 221
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.57 E-value=0.12 Score=47.05 Aligned_cols=23 Identities=39% Similarity=0.845 Sum_probs=20.8
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999988754
No 222
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.54 E-value=0.13 Score=49.50 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.8
Q ss_pred cceeeecCCCcchHHHHHHHHHHHC
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+++|++|+|||+|+.++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999988654
No 223
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.47 E-value=0.13 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999988754
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.47 E-value=0.1 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.4
Q ss_pred ceeeecCCCcchHHHHHHHHHHHCC
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++.++||+|+|||+|++.++...+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999998763
No 225
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.44 E-value=0.13 Score=46.74 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.9
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+++|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999988754
No 226
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.44 E-value=0.13 Score=48.02 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||++++.++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999875
No 227
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.42 E-value=0.12 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=19.7
Q ss_pred ceeeecCCCcchHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~ 391 (718)
++|+++|+||+|||+|++.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4899999999999999998864
No 228
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.42 E-value=0.15 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|+|+||||+|||++|..+++...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 599999999999999999988765
No 229
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.39 E-value=0.12 Score=48.96 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=21.4
Q ss_pred ceeeecCCCcchHHHHHHHHHHHC
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+.+.++|++|+|||+|++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 379999999999999999998764
No 230
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.38 E-value=0.13 Score=46.96 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.0
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|++++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999988754
No 231
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.36 E-value=0.11 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+||.|+|||+|++.++...
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999997664
No 232
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.36 E-value=0.11 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||.|+|||+|++.++...
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997665
No 233
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.34 E-value=0.14 Score=48.16 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.8
Q ss_pred cceeeecCCCcchHHHHHHHHHHHC
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+++|++|+|||+|++++....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4589999999999999999887654
No 234
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.31 E-value=0.13 Score=47.30 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.0
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999988754
No 235
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.30 E-value=0.13 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999998753
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.30 E-value=0.092 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||.|+|||+|++.++...
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987664
No 237
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.27 E-value=0.15 Score=47.95 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.2
Q ss_pred ceeeecCCCcchHHHHHHHHHHHC
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+.|+++|++|+|||+|+..+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999987653
No 238
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.26 E-value=0.15 Score=49.26 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=25.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceeec
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYTT 400 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~~ 400 (718)
.|.|+|++|+|||++++.+++.++..++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 689999999999999999999887655543
No 239
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.24 E-value=0.14 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=20.1
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+++|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999998764
No 240
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.17 E-value=0.16 Score=48.31 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|.|+|++|+|||++++.+++. +..++
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 6999999999999999999987 44343
No 241
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.16 E-value=0.12 Score=46.80 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988754
No 242
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.15 E-value=0.12 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|+||+|||++++.++..++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999998764
No 243
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.13 E-value=0.21 Score=50.90 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
-++++||+|+|||+|+..+++.++..+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~iis 40 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELIS 40 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEEe
Confidence 47889999999999999999998754433
No 244
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.11 E-value=0.12 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.+.|+++|++|+|||+|++.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999988764
No 245
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.09 E-value=0.11 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++|+|+||+|||++++.++..++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999998764
No 246
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.06 E-value=0.11 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.700 Sum_probs=19.7
Q ss_pred ceeeecCCCcchHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~ 391 (718)
+.|+++|++|+|||+|++.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999998865
No 247
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.05 E-value=0.15 Score=54.00 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=21.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++|+||||+|||++++.++....
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 689999999999999999998753
No 248
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.01 E-value=0.13 Score=48.88 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=23.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|.|+|.+|+|||++++.+++.++..++
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi 41 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV 41 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 5889999999999999999998554443
No 249
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.99 E-value=0.15 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|++.+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 358999999999999999988754
No 250
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.98 E-value=0.15 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+.++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999988753
No 251
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.97 E-value=0.16 Score=51.86 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=23.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
-|++.||+|+|||+++..+++.++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~i 31 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEV 31 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccce
Confidence 478899999999999999999886433
No 252
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.93 E-value=0.13 Score=47.02 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=20.4
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 48999999999999999988754
No 253
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.88 E-value=0.12 Score=51.90 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||.|+|||+|++.++...+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987653
No 254
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.85 E-value=0.14 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.|+|.|+||+|||++++.+++.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999864
No 255
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.83 E-value=0.15 Score=50.17 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.4
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-+++.|+||+|||+++..++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999998766543
No 256
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.82 E-value=0.15 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.1
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+.++...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988764
No 257
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.82 E-value=0.17 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=22.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPR 395 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~ 395 (718)
.++++|++|+|||++++.++...+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 7999999999999999999988753
No 258
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.78 E-value=0.21 Score=56.74 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=18.2
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++.||||||||+++..+...
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999987766544
No 259
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.78 E-value=0.16 Score=48.22 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+|++|+|||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 260
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.76 E-value=0.13 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||.|+|||+|++.++.+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 488999999999999999987653
No 261
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.76 E-value=0.12 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||.|+|||+|++.++...
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999997765
No 262
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.75 E-value=0.1 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||+|+|||+|++.++...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998765
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.74 E-value=0.13 Score=49.39 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+|++|+|||++++.++..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999864
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.73 E-value=0.14 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-++|+|+||+|||+|++.++...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998775
No 265
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.71 E-value=1.3 Score=35.40 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEeCCe
Q 005024 671 DVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHT 710 (718)
Q Consensus 671 ~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~~ 710 (718)
.++..+ .|+.+|+++++|.+.|.+|.+.|+|...+.+
T Consensus 27 ~~t~~e---LA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~ 63 (81)
T 1qbj_A 27 ATTAHD---LSGKLGTPKKEINRVLYSLAKKGKLQKEAGT 63 (81)
T ss_dssp CBCHHH---HHHHHTCCHHHHHHHHHHHHHTTSEEEESSS
T ss_pred CcCHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEecCCC
Confidence 355554 4667899999999999999999999987754
No 266
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.70 E-value=0.16 Score=49.92 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.9
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
-+++.|+||+|||+++..++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999976653
No 267
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.67 E-value=0.16 Score=49.79 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=24.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
.|.|+|++|+|||++++.++..++..++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 58999999999999999999876655444
No 268
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.67 E-value=0.16 Score=47.64 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=21.3
Q ss_pred cccceeeecCCCcchHHHHHHHHHHH
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
...+.|+++|++|+|||+|+..+...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34468999999999999999887654
No 269
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.65 E-value=0.13 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+||.|+|||+|++.++...
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999987664
No 270
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.65 E-value=0.12 Score=46.98 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.8
Q ss_pred ceeeecCCCcchHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~ 390 (718)
++|+++|+||+|||+|++.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 379999999999999998874
No 271
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.61 E-value=0.16 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.2
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|++++...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999998764
No 272
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.61 E-value=0.13 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||.|+|||+|++.++...+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 488999999999999999987653
No 273
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.58 E-value=0.13 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||+|+|||+|++.++...
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999987664
No 274
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.57 E-value=0.13 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.7
Q ss_pred cccceeeecCCCcchHHHHHHHHHHHC
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+|.+ ++|+|+||+|||+|+..++..+
T Consensus 29 ~G~i-~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTV-GALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSE-EEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCE-EEEEcCCCCCHHHHHHHHHHHH
Confidence 4444 8999999999999999988654
No 275
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.54 E-value=0.16 Score=46.55 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.8
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.+.++|+||+|||+|++.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998753
No 276
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=89.54 E-value=0.3 Score=55.07 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=34.6
Q ss_pred CcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHH
Q 005024 336 PEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 336 p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
+.++|.+.....|...|.... .+. --|+++|++|+|||+||..++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-----~~~-----~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-----GEP-----GWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-----TSC-----EEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhccc-----CCC-----ceEEEEcCCCCCHHHHHHHHHh
Confidence 468999998888887776421 000 0589999999999999988753
No 277
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.51 E-value=0.2 Score=51.95 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=23.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCce
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGV 397 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~ 397 (718)
-|.|.||+|+|||++++.++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~i 35 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEI 35 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCce
Confidence 589999999999999999999987433
No 278
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.50 E-value=0.16 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|+.++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999998754
No 279
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.49 E-value=0.17 Score=46.59 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.8
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..+|+++|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999988653
No 280
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.47 E-value=0.14 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||.|+|||+|++.++...
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999997664
No 281
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.46 E-value=0.14 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||.|+|||+|++.++...
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 48899999999999999997765
No 282
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.45 E-value=0.23 Score=47.96 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.|.|.|++|+|||++++.++. +...++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~i 32 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVI 32 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 689999999999999999998 544433
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.45 E-value=0.14 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||.|+|||+|++.++...
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999997665
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.44 E-value=0.16 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=21.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++++||+|+|||++++.++...
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 69999999999999999999876
No 285
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.40 E-value=0.56 Score=46.36 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=22.2
Q ss_pred cccceeeecCCCcchHHHHHHHHHHHC
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
...++|+|+|.||+|||+|+.++...-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 345699999999999999999887543
No 286
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=89.40 E-value=0.24 Score=55.37 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHH
Q 005024 339 YGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 339 ~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
+|.+..+..|...|..+... + .--|.|+|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~----~-----~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDL----D-----SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTS----S-----SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCC----C-----ceEEEEEcCCCCCHHHHHHHHHH
Confidence 69999888888777543100 0 01588999999999999999996
No 287
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.39 E-value=0.17 Score=47.60 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.2
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+.++...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 458999999999999999988764
No 288
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.39 E-value=0.18 Score=47.16 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.4
Q ss_pred cccceeeecCCCcchHHHHHHHHHHH
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
...+.|+++|++|+|||+|+..+...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34569999999999999999776543
No 289
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.30 E-value=0.17 Score=46.75 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.6
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++|+++|++|+|||+|+..+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3458999999999999999988754
No 290
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.27 E-value=0.16 Score=46.84 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.5
Q ss_pred cceeeecCCCcchHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~ 390 (718)
.++|+++|++|+|||+|+.++.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999998875
No 291
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.26 E-value=0.18 Score=47.23 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.5
Q ss_pred cccceeeecCCCcchHHHHHHHHHHH
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
...++|+++|++|+|||+|+..+...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 34468999999999999999988653
No 292
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.25 E-value=0.18 Score=46.70 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|++.+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999988754
No 293
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.22 E-value=0.18 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 348999999999999999988764
No 294
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.21 E-value=0.17 Score=47.72 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=21.7
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++|+++|++|+|||+|+.++...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3458999999999999999998763
No 295
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.16 E-value=0.16 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-++|+||||+|||+|+..++..+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999888764
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.16 E-value=0.15 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||.|+|||+|++.++...+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 488999999999999999987653
No 297
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.12 E-value=0.19 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.5
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++|+++|++|+|||+|+..+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999988754
No 298
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.12 E-value=0.16 Score=47.97 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=21.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHHC
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+.+.|+|++|+|||+|++.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 299
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.11 E-value=0.15 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=21.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||.|+|||+|++.++...+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999987753
No 300
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.09 E-value=0.17 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.0
Q ss_pred eeecCCCcchHHHHHHHHHHHCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+|+|+.|+|||+++++|...+.
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 67999999999999999998874
No 301
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.08 E-value=0.19 Score=46.70 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.0
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999988754
No 302
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.07 E-value=0.16 Score=47.08 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=20.2
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.|.|+|+||+|||+|++.+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998764
No 303
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.03 E-value=0.2 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=21.1
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999988764
No 304
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.02 E-value=0.18 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.2
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999998754
No 305
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.01 E-value=0.14 Score=50.66 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+||+|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999987753
No 306
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.01 E-value=0.18 Score=46.98 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.2
Q ss_pred cceeeecCCCcchHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
.++|+++|++|+|||+|+..+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999988764
No 307
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.96 E-value=0.19 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.3
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999888653
No 308
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.95 E-value=0.16 Score=46.77 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=20.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988743
No 309
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.93 E-value=0.17 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++...+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999987753
No 310
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.91 E-value=0.21 Score=46.54 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.4
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..|.++|++|+|||+|++.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998753
No 311
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.90 E-value=0.15 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||.|+|||+|++.++.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999997665
No 312
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.89 E-value=0.091 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|.|+|++|+|||++++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998864
No 313
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.86 E-value=0.21 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.7
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999888754
No 314
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.86 E-value=0.16 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||.|+|||+|++.++.+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999997765
No 315
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.85 E-value=0.19 Score=47.33 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.7
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++|+++|++|+|||+|++.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3458999999999999999988764
No 316
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.85 E-value=0.2 Score=47.82 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=21.1
Q ss_pred cccceeeecCCCcchHHHHHHHHHHH
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+..++|+++|++|+|||+|+.++...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44558999999999999999988753
No 317
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.84 E-value=0.38 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=17.9
Q ss_pred CCeeeecccccCChHHHHHHHHhhc
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVME 458 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~me 458 (718)
-.+++|||+.-++++....|.++.+
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~ 106 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAE 106 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999998776555444333
No 318
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.76 E-value=0.16 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||.|+|||+|++.++...+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999987653
No 319
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.75 E-value=0.16 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||+|+|||+|++.++...
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999987654
No 320
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.72 E-value=0.18 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.7
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999988765
No 321
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.66 E-value=0.21 Score=47.44 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=21.1
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 458999999999999999988754
No 322
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.58 E-value=0.21 Score=46.76 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999988754
No 323
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.47 E-value=0.22 Score=46.21 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.1
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 358999999999999999988754
No 324
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.39 E-value=0.3 Score=56.99 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=18.3
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++.||||||||+++..+...
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999887766554
No 325
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.35 E-value=0.19 Score=49.21 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|.|.|+||+|||++++.+++.++
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999875
No 326
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.34 E-value=0.19 Score=46.75 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|++.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999988754
No 327
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.34 E-value=0.2 Score=46.87 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=20.0
Q ss_pred ceeeecCCCcchHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~ 391 (718)
++|+++|++|+|||+|++.+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999998874
No 328
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.33 E-value=0.22 Score=46.71 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.0
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|++++...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999988754
No 329
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.28 E-value=0.23 Score=47.05 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=21.3
Q ss_pred cccceeeecCCCcchHHHHHHHHHHH
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+..++|+++|++|+|||+|+.++...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34458999999999999999988754
No 330
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.26 E-value=0.17 Score=47.18 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.7
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+++|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 7999999999999999988754
No 331
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.21 E-value=0.22 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.0
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-+.|+||.|+|||+|++.++..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999865
No 332
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.19 E-value=0.18 Score=47.36 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.8
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..+|+++|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999988643
No 333
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.19 E-value=0.53 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++++|++|+|||+++..++..+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998765
No 334
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.18 E-value=0.22 Score=49.45 Aligned_cols=22 Identities=36% Similarity=0.339 Sum_probs=19.9
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-+.|+||.|+|||+|++.++..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999865
No 335
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=88.12 E-value=0.2 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.0
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|+++|++|+|||+|++.+...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999988753
No 336
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.11 E-value=0.23 Score=46.45 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.2
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+.++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999988754
No 337
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.07 E-value=0.22 Score=52.09 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++.+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 478999999999999999997753
No 338
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.06 E-value=0.23 Score=46.56 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.6
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++|+++|++|+|||+|+..+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3458999999999999999988754
No 339
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.02 E-value=0.22 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||||+|||+|++.++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 340
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.01 E-value=0.15 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.0
Q ss_pred cceeeecCCCcchHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~ 390 (718)
.++|+++|++|+|||+|+..+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999997764
No 341
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.00 E-value=0.21 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++.+.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998764
No 342
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.99 E-value=0.2 Score=47.24 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.1
Q ss_pred ccceeeecCCCcchHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~ 390 (718)
..++|+++|++|+|||+|+..+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999998874
No 343
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=87.98 E-value=0.21 Score=47.01 Aligned_cols=24 Identities=38% Similarity=0.840 Sum_probs=21.2
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 458999999999999999988754
No 344
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=87.97 E-value=0.23 Score=47.07 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.3
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988653
No 345
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=87.96 E-value=0.96 Score=50.88 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=17.5
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
++|+++++|+|||..+-.++.
T Consensus 200 ~~ll~~~TGsGKT~~~~~~~~ 220 (590)
T 3h1t_A 200 RSLITMATGTGKTVVAFQISW 220 (590)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEecCCCChHHHHHHHHH
Confidence 789999999999988755554
No 346
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.96 E-value=0.24 Score=47.41 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=20.6
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999988764
No 347
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.86 E-value=0.21 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=19.9
Q ss_pred cceeeecCCCcchHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
.+.|+++|++|+|||+|++.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999988754
No 348
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.76 E-value=0.22 Score=46.82 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.3
Q ss_pred ccceeeecCCCcchHHHHHHHHHHHC
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
..++|+++|++|+|||+|++.+....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 44589999999999999999887654
No 349
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.74 E-value=0.26 Score=47.44 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.2
Q ss_pred cccceeeecCCCcchHHHHHHHHHHH
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
...+.|+++|++|+|||+|+..+...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 34569999999999999999988654
No 350
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.74 E-value=0.27 Score=50.43 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||+|+|||++++.++..+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999999999876
No 351
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.71 E-value=0.23 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 478999999999999999998764
No 352
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.71 E-value=0.22 Score=47.51 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=21.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+|++|+|||++++.++..+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999875
No 353
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.69 E-value=0.2 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.3
Q ss_pred cceeeecCCCcchHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
.++|+++|++|+|||+|+..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34899999999999999998874
No 354
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.63 E-value=0.23 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 478999999999999999998764
No 355
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.63 E-value=0.24 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-++|+|+||+|||+|+..++...
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999998887543
No 356
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=87.63 E-value=0.25 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=20.6
Q ss_pred cccceeeecCCCcchHHHHHHHHHH
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
...++|+++|++|+|||+|+..+..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4456899999999999999988764
No 357
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=87.59 E-value=0.26 Score=46.46 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.2
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+.|+|+|+||+|||+|+..+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999888753
No 358
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.59 E-value=0.24 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++.+.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 378999999999999999998764
No 359
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.59 E-value=0.22 Score=47.34 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999988754
No 360
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.58 E-value=0.21 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=21.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++.+.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 378999999999999999998764
No 361
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=87.56 E-value=0.15 Score=48.42 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=21.0
Q ss_pred cccceeeecCCCcchHH-HHHHHHHHHC
Q 005024 367 RGDLHICLMGDPGVAKS-QLLKHIINVA 393 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt-~la~~i~~~~ 393 (718)
.|.+ .+++|+.|+||| .|++++.+..
T Consensus 19 ~g~l-~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 19 RGQI-QVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp CCEE-EEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEE-EEEECCCCCcHHHHHHHHHHHHH
Confidence 3444 788999999999 8888887764
No 362
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.55 E-value=0.27 Score=51.33 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=20.0
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-++|+|+||+|||+++..++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998876
No 363
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.49 E-value=0.27 Score=45.96 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.2
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
....|+++|++|+|||+|+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3448999999999999999988654
No 364
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.47 E-value=0.22 Score=52.23 Aligned_cols=24 Identities=17% Similarity=0.446 Sum_probs=21.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++.+.+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998764
No 365
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.45 E-value=0.24 Score=52.17 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++.+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 478999999999999999998864
No 366
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.40 E-value=0.28 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+-|.||+|+|||++++.++..++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 488999999999999999998764
No 367
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=87.31 E-value=0.17 Score=46.97 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=10.2
Q ss_pred ceeeecCCCcchHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~ 391 (718)
++|+++|++|+|||+|+..+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999987753
No 368
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=87.28 E-value=0.69 Score=45.87 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+|+|+||+|||+|+..+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999988753
No 369
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.27 E-value=0.25 Score=50.56 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=19.4
Q ss_pred ccccceeeecCCCcchHHHHHHHHHHH
Q 005024 366 IRGDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 366 ~r~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.+| + +++.||||+|||+|+-.++..
T Consensus 27 ~~G-i-teI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 27 QSG-L-LILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CSE-E-EEEEESSSSSHHHHHHHHHHH
T ss_pred cCC-e-EEEECCCCCCHHHHHHHHHHH
Confidence 356 5 899999999999997655443
No 370
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.26 E-value=0.3 Score=51.40 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=22.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|++|+|||+|++.++...+
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999874
No 371
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.26 E-value=0.25 Score=46.43 Aligned_cols=23 Identities=26% Similarity=0.664 Sum_probs=20.0
Q ss_pred cceeeecCCCcchHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
.++|+++|++|+|||+|++.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999988753
No 372
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.25 E-value=0.25 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 478999999999999999998764
No 373
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.21 E-value=0.27 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+|++|+|||+|++.++..++
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 488999999999999999999874
No 374
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.18 E-value=0.22 Score=53.58 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|+|+|+||+|||++++.+++.++
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999987653
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.08 E-value=0.29 Score=50.27 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+|++|+|||++++.++..++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999998754
No 376
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=86.99 E-value=0.25 Score=47.22 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.+.|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988764
No 377
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.98 E-value=0.29 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-++|+|+||+|||+++..++...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHhHHHHHHHHHH
Confidence 48999999999999999988764
No 378
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=86.97 E-value=0.23 Score=47.03 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.4
Q ss_pred cceeeecCCCcchHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~ 390 (718)
.+.|+++|++|+|||+|++.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999998764
No 379
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.96 E-value=0.25 Score=47.06 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|++.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 358999999999999999988754
No 380
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.93 E-value=0.29 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++++||+|+|||++++.++...+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 699999999999999999998763
No 381
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.93 E-value=0.7 Score=47.20 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+|++|+|||++++.++..+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999875
No 382
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=86.93 E-value=0.55 Score=39.05 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=23.4
Q ss_pred eeeeeeecCCCCceEEEeecceeecCCCCCCCccccCCCC
Q 005024 171 MQVAVYTCEECGFEIYQEVTARVFMPLFECPSQRCKINKT 210 (718)
Q Consensus 171 ~~~~~~~C~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~ 210 (718)
+...-|+|.+||+.| ......|..|| .|++.+.
T Consensus 63 L~v~p~~C~~CG~~F-----~~~~~kPsrCP--~CkSe~I 95 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVF-----KAEINIPSRCP--KCKSEWI 95 (105)
T ss_dssp EEECCCBBTTTCCBC-----CCCSSCCSSCS--SSCCCCB
T ss_pred EEEECcChhhCcCee-----cccCCCCCCCc--CCCCCcc
Confidence 455679999999986 12345668999 4987543
No 383
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.92 E-value=0.3 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+||+|+|||++++.++..+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999875
No 384
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=86.76 E-value=0.26 Score=46.53 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.5
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..+.|+++|++|+|||+|++++...
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999877553
No 385
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=86.74 E-value=0.21 Score=46.37 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=21.1
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++|+++|++|+|||+|+..+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999988754
No 386
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=86.73 E-value=0.3 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.5
Q ss_pred cceeeecCCCcchHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
.++|+++|++|+|||+|+..+..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 46899999999999999998864
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.71 E-value=0.29 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.2
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.|.|+|++|+|||++++.++..
T Consensus 77 iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6999999999999999999953
No 388
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.68 E-value=0.27 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.++++||+|+|||++++++....+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 589999999999999999998764
No 389
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=86.66 E-value=2 Score=31.25 Aligned_cols=46 Identities=7% Similarity=0.134 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEe
Q 005024 654 SDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIH 707 (718)
Q Consensus 654 ~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~ 707 (718)
..+++.|+. +|+ .+. +...+...|++++.+.+.|+.|++.|+|...
T Consensus 13 ~~lL~yIr~----sGG-ild---I~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 13 RELLDYIVN----NGG-FLD---IEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHH----TTS-EEE---HHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH----cCC-EEe---HHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 445555553 332 344 4456778899999999999999999999875
No 390
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.61 E-value=0.21 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||.|+|||+|++.++...+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 488999999999999999987764
No 391
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=86.60 E-value=0.26 Score=46.75 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.8
Q ss_pred ccceeeecCCCcchHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
..++|+++|++|+|||+|++.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 345899999999999999998864
No 392
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=86.55 E-value=5.1 Score=38.48 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhccc--ccc--ccc
Q 005024 570 RELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFS--LYS--DDR 645 (718)
Q Consensus 570 ~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l~~~~~~~--~~~--~~~ 645 (718)
.++...|.++....+... ..-++...+-.+ .-|.++.+.|+++|+.+|+..++.-... +.. ++.
T Consensus 75 ~ELa~qi~e~c~~~~~~~------GG~I~L~dl~~~------~nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~ 142 (218)
T 3cuq_B 75 MQLAKQLAGILQVPLEER------GGIMSLTEVYCL------VNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGV 142 (218)
T ss_dssp HHHHHHHHHHHHHHHHHT------TSEEEHHHHHHH------HHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSB
T ss_pred HHHHHHHHHHHHHHHHhC------CCeEEHHHHHHH------HHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCc
Confidence 345555566555544432 123444444333 3344567789999999999998753211 111 011
Q ss_pred ------ccCccchHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEeCCeeEEEe
Q 005024 646 ------QRSGLDAISDIYSILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRF 715 (718)
Q Consensus 646 ------~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~~~~i~~ 715 (718)
+.........+++.+. ..+ +++..++ +..+|++.....+.|+.+.+.|++-+......++|
T Consensus 143 ~vvqs~~~~~~~~~~~il~~~~----~~g--~vt~~~l---a~~l~ws~~~a~e~L~~~e~~G~l~~D~~~eg~~y 209 (218)
T 3cuq_B 143 MVIELQSHKEEEMVASALETVS----EKG--SLTSEEF---AKLVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRF 209 (218)
T ss_dssp EEEEETTCCGGGGHHHHHHHHH----HTS--CBCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEEESSSCEEE
T ss_pred EEEEcCCCchHHHHHHHHHHHH----HCC--CcCHHHH---HHHhCCCHHHHHHHHHHHHHcCCEEEECCCCceEE
Confidence 0111112233444443 233 4665554 55779999999999999999999999866555555
No 393
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=86.40 E-value=0.34 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999888753
No 394
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.36 E-value=0.26 Score=45.79 Aligned_cols=24 Identities=13% Similarity=0.404 Sum_probs=21.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|++|+|||++++.+...+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998863
No 395
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=86.28 E-value=0.44 Score=55.65 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.1
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
.+++.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999987765543
No 396
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.26 E-value=1.3 Score=45.17 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-++++|++|+|||+++..++..+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 48899999999999999998775
No 397
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.25 E-value=0.29 Score=51.82 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=24.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
-|.|.||+|+|||+|+..+++.++..+..
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 47899999999999999999988754433
No 398
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.24 E-value=0.3 Score=45.86 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.6
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++|+++|++|+|||+|++.+...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999988754
No 399
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.23 E-value=0.29 Score=52.17 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=19.6
Q ss_pred cccceeeecCCCcchHHHHHHHHHH
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
+|.+ ++|+||||+|||+|++.++-
T Consensus 177 ~Gei-~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSI-TELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSE-EEEEESTTSSHHHHHHHHHH
T ss_pred CCcE-EEEEcCCCCChHHHHHHHHH
Confidence 3444 89999999999999997653
No 400
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=86.23 E-value=0.29 Score=47.02 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.3
Q ss_pred cceeeecCCCcchHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
.++|+++|++|+|||+|+..+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34899999999999999998864
No 401
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.21 E-value=0.29 Score=46.67 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 348999999999999999988753
No 402
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=86.21 E-value=0.3 Score=46.39 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.9
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 358999999999999999988654
No 403
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=86.20 E-value=0.21 Score=46.69 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=18.8
Q ss_pred cceeeecCCCcchHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHI 389 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i 389 (718)
.++|+++|++|+|||+|+.++
T Consensus 22 ~~~i~v~G~~~~GKssli~~l 42 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 348999999999999999876
No 404
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.18 E-value=1.2 Score=42.91 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=45.4
Q ss_pred cccceeeecCCCcchHHH-HHHHHHHHCC--Cc--eeecCC--------CCCCCcceeeEee-cccccceeeecceEeee
Q 005024 367 RGDLHICLMGDPGVAKSQ-LLKHIINVAP--RG--VYTTGR--------GSSGVGLTAAVQR-DNVTNEMVLEGGALVLA 432 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~-la~~i~~~~~--~~--~~~~~~--------~~~~~~l~~~~~~-~~~~g~~~~~~g~l~~a 432 (718)
+|.+ .+++|+-|+|||+ |++.+.+... .. ++.... ..+..|+...... .....-+.. ...
T Consensus 27 ~G~I-~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~-----i~~ 100 (219)
T 3e2i_A 27 SGWI-ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTH-----DLT 100 (219)
T ss_dssp CCEE-EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGS-----CCT
T ss_pred CceE-EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHH-----Hhc
Confidence 4555 4679999999998 6666655432 11 222111 1122222221111 100100000 112
Q ss_pred cCCeeeecccccCChHHHHHHHHhhccc
Q 005024 433 DMGICAIDEFDKMDESDRTAIHEVMEQQ 460 (718)
Q Consensus 433 ~~gil~iDEi~~~~~~~~~~L~~~me~~ 460 (718)
+..+++|||+.-++++....+.++.+.+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHHCC
Confidence 4469999999999987777676665443
No 405
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=86.15 E-value=0.31 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.8
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 358999999999999999887753
No 406
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.12 E-value=0.3 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.9
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-+||.|++|+|||++|..+.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 6999999999999999888764
No 407
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=86.07 E-value=0.24 Score=46.37 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=20.1
Q ss_pred ccceeeecCCCcchHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
..++|+++|++|+|||+|++.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999987754
No 408
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=86.06 E-value=0.29 Score=46.37 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.1
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+++|++|+|||+|+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999988764
No 409
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.96 E-value=0.39 Score=50.34 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+++.|+||+|||+++..++..+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999998877653
No 410
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=85.86 E-value=0.3 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=21.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|.|+|++|+|||++++.++..++
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999998874
No 411
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=85.85 E-value=0.36 Score=46.60 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=20.6
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|+..+...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999988754
No 412
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=85.81 E-value=0.87 Score=43.77 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=17.6
Q ss_pred CCeeeecccccCChHHHHHHHHhh
Q 005024 434 MGICAIDEFDKMDESDRTAIHEVM 457 (718)
Q Consensus 434 ~gil~iDEi~~~~~~~~~~L~~~m 457 (718)
-.+++|||+.-++++....|.++.
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~ 125 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLA 125 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHH
T ss_pred CCEEEEECcccCCHHHHHHHHHHh
Confidence 469999999999877665444433
No 413
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.80 E-value=0.4 Score=49.41 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=19.3
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-++|.|+||+|||+++..++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3899999999999999888754
No 414
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.76 E-value=0.36 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+-|+||+|+|||+|++.++.+.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 478999999999999999987753
No 415
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=85.76 E-value=2.3 Score=33.64 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEe
Q 005024 659 ILRDEAARSNKLDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIH 707 (718)
Q Consensus 659 ~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~ 707 (718)
.|.+++...+ .++..+ .++.+|+++.++.+.|+.|++.|++.+.
T Consensus 6 ~Il~~L~~~g--~vsv~e---La~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRG--RMEAAQ---ISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSC--SBCHHH---HHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcC--CCcHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3444455555 355555 4668899999999999999999999988
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.69 E-value=0.37 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=21.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-++|+|++|+|||++++.++..+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhc
Confidence 48899999999999999999875
No 417
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.63 E-value=0.31 Score=50.33 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=19.8
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-++|+|+||+|||+++..++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988865
No 418
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.59 E-value=0.35 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+|+||+|||+|++.++..+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999998765
No 419
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.56 E-value=0.54 Score=50.26 Aligned_cols=24 Identities=17% Similarity=0.499 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|++|+|||+|++.+....+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 420
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=85.52 E-value=0.58 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+||+|+|||+|++.+++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 79999999999999999888764
No 421
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=85.50 E-value=0.34 Score=47.24 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCcee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVY 398 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~ 398 (718)
.+=|.|+||+|||++++.+++.+....+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 5678999999999999999988754443
No 422
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.50 E-value=0.31 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+||+|+|||+|++.++...
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999998765
No 423
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=85.35 E-value=0.37 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.3
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+.|+|+|+||+|||+|+.++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999998653
No 424
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.35 E-value=0.32 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.659 Sum_probs=20.1
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|.|+|+||+|||+|+.++...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998654
No 425
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.33 E-value=0.33 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.0
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
-+.|.|+.|+|||++++.++..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999998876
No 426
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.29 E-value=0.4 Score=43.37 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.6
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+|+||.|+|||+++.++.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998654
No 427
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=85.28 E-value=0.4 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.5
Q ss_pred cceeeecCCCcchHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~ 390 (718)
.+.|+|+|+||+|||+|+..+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998876
No 428
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=85.27 E-value=0.29 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=19.4
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|.++|++|+|||+|++.+...
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999997653
No 429
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.26 E-value=0.36 Score=44.71 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.++|++|+|||+++..+...+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999988765
No 430
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=85.22 E-value=0.5 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.++|+|++|||||.|+..|++..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHH
Confidence 79999999999999998888753
No 431
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=85.17 E-value=0.29 Score=46.36 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=18.5
Q ss_pred eeeecCCCcchHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~ 390 (718)
.|+++|++|+|||+|++.+.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 79999999999999999875
No 432
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.14 E-value=0.33 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
++.|+|++|+|||+|++.++...
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 58999999999999999998763
No 433
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=85.13 E-value=0.38 Score=45.16 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=19.7
Q ss_pred cceeeecCCCcchHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
..+|+++|++|+|||+|+..+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999988753
No 434
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=85.01 E-value=0.22 Score=47.27 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=6.2
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..++|+++|++|+|||+|+..+...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999877644
No 435
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=84.98 E-value=0.24 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.6
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
..+.|+|++|+|||+|++.+...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999877543
No 436
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=84.85 E-value=0.45 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.578 Sum_probs=19.1
Q ss_pred ceeeecCCCcchHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~ 391 (718)
..|+|+|++|+|||+|+..+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 3699999999999999987654
No 437
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=84.82 E-value=0.43 Score=52.00 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-++|+|++|+|||++++.++..+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHh
Confidence 48899999999999999998875
No 438
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=84.65 E-value=0.43 Score=46.31 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.6
Q ss_pred ceeeecCCCcchHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~ 391 (718)
..|+++|++|+|||+|+.++..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999988754
No 439
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.64 E-value=0.57 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+|++|+|||++++.++..++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhc
Confidence 689999999999999999998863
No 440
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.62 E-value=0.3 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 488999999999999999987653
No 441
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=84.60 E-value=0.45 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.8
Q ss_pred ceeeecCCCcchHHHHHHHHHHHC
Q 005024 370 LHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
..|+|+|.||+|||++++.+++.+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999999875
No 442
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.59 E-value=0.32 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.|+||.|+|||+|++.++...
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998765
No 443
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=84.57 E-value=0.48 Score=44.12 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.++|++|+|||++++.+...+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 47899999999999999988764
No 444
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=84.50 E-value=0.54 Score=44.90 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=25.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHCCCceee
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAPRGVYT 399 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~~~~~~ 399 (718)
-|.|.|++|+|||++++.+++.+...++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999877653
No 445
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.46 E-value=0.39 Score=52.18 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=22.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||.|+|||+|+|.++...+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 589999999999999999999873
No 446
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=84.32 E-value=0.24 Score=48.42 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.7
Q ss_pred eeecCCCcchHHHHHHHHHHHCC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
+.|+||+|+|||+++++++..++
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 57889999999999999998864
No 447
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=84.26 E-value=0.65 Score=45.38 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=15.9
Q ss_pred eeeecCCCcchHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHI 389 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i 389 (718)
++++.|++|+|||+++...
T Consensus 78 ~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHH
Confidence 7999999999999765543
No 448
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=84.24 E-value=0.47 Score=49.58 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=22.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+|++|+|||+|++.++....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999864
No 449
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.18 E-value=0.51 Score=50.17 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.3
Q ss_pred ccceeeecCCCcchHHHHHHHHHHHC
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+-|++++|++|+|||++++.+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34499999999999999999987653
No 450
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=84.17 E-value=0.47 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.9
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+.|+|+|+||+|||+|+..+...
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999886543
No 451
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.14 E-value=0.39 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.535 Sum_probs=20.9
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+|.|+|++|+|||+|++.++...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998764
No 452
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=84.08 E-value=0.47 Score=47.73 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.0
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.|.|+|+||+|||+|+.++...
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999998754
No 453
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=83.79 E-value=0.41 Score=53.01 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-|+|+|.||+|||++++.+++.+
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 454
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.70 E-value=0.5 Score=59.07 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.2
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+|++||||||||+||++++...
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 9999999999999999988754
No 455
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=83.68 E-value=0.4 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.680 Sum_probs=19.3
Q ss_pred cceeeecCCCcchHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~ 390 (718)
.++|+++|+||+|||+|+..+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999998764
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=83.66 E-value=0.3 Score=48.71 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=22.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.|.|.|.+|+|||++++.+++.+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999998874
No 457
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=83.57 E-value=0.49 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.|.++|++|+|||+|+..++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999998887663
No 458
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=83.57 E-value=0.81 Score=50.22 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=33.8
Q ss_pred CCcccccHHHHHHHHHHHhCCccccCCCCccccccceeeecCCCcchHHHHHHHHHHHCC
Q 005024 335 APEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 335 ~p~i~g~~~~k~~i~~~l~~~~~~~~~~~~~~r~~i~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.|..+...++-+.+.... ... ...| .+|+|.|.+|+|||++++++++.+.
T Consensus 371 ~P~~f~rpeV~~vLr~~~-~~~---~~~~------~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 371 IPEWFSYPEVVKILRESN-PPR---PKQG------FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCTTTSCHHHHHHHHHHS-CCG---GGCC------EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred CCccccChhhHHHHHHhc-ccc---cccc------eEEEecccCCCCHHHHHHHHHHHHH
Confidence 356777777744443322 111 1112 2799999999999999999999975
No 459
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=83.74 E-value=0.23 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.7
Q ss_pred cceeeecCCCcchHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
.++|+++|++|+|||+|+..+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 44899999999999999977653
No 460
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.05 E-value=0.52 Score=49.60 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=20.6
Q ss_pred cccceeeecCCCcchHHHHHHHHHHHC
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+|.+ ++|+|+||+|||+++..++...
T Consensus 73 ~G~l-i~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 73 RGRI-TEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp TTSE-EEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcE-EEEEcCCCCChHHHHHHHHHHH
Confidence 3444 7889999999999998777553
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.88 E-value=0.55 Score=46.07 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=22.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.|.+.|.+|+|||++++.+++.++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999974
No 462
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.88 E-value=0.47 Score=46.29 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=18.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|.|.|++|+|||++++.+++.++
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998864
No 463
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=82.85 E-value=0.46 Score=46.68 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.1
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-|.|.|++|+|||++++.+++.+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998876
No 464
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=82.81 E-value=0.51 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.6
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+.++|++|+|||+++..++..+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 79999999999999999887664
No 465
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=82.81 E-value=2.7 Score=33.26 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCeEEEeCC-eeEEEe
Q 005024 671 DVSYAHALNWISRK--GYSEAQLKECLEEYAALNVWQIHPH-TFDIRF 715 (718)
Q Consensus 671 ~~~~~~l~~~~~~~--g~~~~~~~~~l~~l~~~g~i~~~~~-~~~i~~ 715 (718)
.++..+|.+.+.+. +++..++++.|+.|.+.|++..... +...+|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 58889999988665 7999999999999999999988654 334444
No 466
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=82.76 E-value=0.44 Score=45.79 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.4
Q ss_pred cceeeecCCCcchHHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.+.|+++|++|+|||+|+.++...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 348999999999999999887543
No 467
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.65 E-value=0.67 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+++.|+||+|||+++..++...
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999887654
No 468
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=82.56 E-value=0.51 Score=44.16 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=18.8
Q ss_pred eeecCCCcchHHHHHHHHHHH
Q 005024 372 ICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999988754
No 469
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=82.13 E-value=0.53 Score=47.32 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|.++|+||+|||+|+.++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998654
No 470
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=82.12 E-value=7.4 Score=30.28 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEeCCeeEEEe
Q 005024 656 IYSILRDEAARSNKLD-VSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRF 715 (718)
Q Consensus 656 i~~~i~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~~~~i~~ 715 (718)
+++.++.....-+... .+ ..+.|+++|+++..+.+.|..|.+.|++...+++...=+
T Consensus 13 ~~~~v~~~i~~L~~~~~~T---a~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTT---AISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp HHHHHHHHHHTSCTTCEEC---HHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred HHHHHHHHHHhCCCCcchH---HHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 4444444443333332 33 445688999999999999999999999999988765533
No 471
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=82.12 E-value=0.57 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.2
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+||+|+|||+|++.++...+
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 589999999999999999999874
No 472
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.88 E-value=0.61 Score=59.17 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+++|+||||||||+||.+++..+
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998887665
No 473
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=81.84 E-value=0.96 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+.|+|++|+|||+|++.+....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58899999999999999998654
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.69 E-value=0.65 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-++|.|+||+|||+|++.++...
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998765
No 475
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=81.66 E-value=0.87 Score=49.20 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.3
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.++|+|++|+|||+|+..++..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 6899999999999999977654
No 476
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=81.62 E-value=0.56 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=19.7
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+|.|+|+||+|||+|+.++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999988654
No 477
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.60 E-value=0.89 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.3
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+|++|+|||+|++.+. ..+
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 47899999999999999999 653
No 478
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=81.56 E-value=0.31 Score=46.80 Aligned_cols=22 Identities=36% Similarity=0.872 Sum_probs=19.2
Q ss_pred cceeeecCCCcchHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHII 390 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~ 390 (718)
.++|+++|++|+|||+|+.++.
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCT
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4589999999999999997664
No 479
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=81.50 E-value=0.6 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.5
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-|.|.|++|+|||++++.+++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998763
No 480
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=81.47 E-value=0.58 Score=46.82 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.4
Q ss_pred cceeeecCCCcchHHHHHHHHHH
Q 005024 369 DLHICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 369 ~i~vLl~G~pGtGKt~la~~i~~ 391 (718)
.++|+++|++|+|||+|+.++..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999998874
No 481
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=81.46 E-value=0.66 Score=50.27 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
-+++.|+||+|||+++..++...
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 38999999999999998887653
No 482
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=81.38 E-value=0.76 Score=48.01 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.|.|+|+||+|||+|+..+....
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 483
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.98 E-value=0.74 Score=47.75 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=21.1
Q ss_pred cccceeeecCCCcchHHHHHHHHHHHC
Q 005024 367 RGDLHICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 367 r~~i~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
+|++ ++|.|+||+|||+++..++...
T Consensus 45 ~G~L-iiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 45 KGSL-VIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp TTCE-EEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcE-EEEEeCCCCCHHHHHHHHHHHH
Confidence 3444 8899999999999998887653
No 484
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=80.93 E-value=0.56 Score=47.92 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=21.0
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
-+.|+|++|+|||+|++.++...+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 478999999999999999987653
No 485
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=80.91 E-value=0.66 Score=44.31 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.8
Q ss_pred eeecCCCcchHHHHHHHHHHHC
Q 005024 372 ICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 372 vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.+|+||.|+|||+++.+|...+
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998765
No 486
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=80.89 E-value=0.64 Score=48.84 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=19.0
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
+|+++|++|+|||+|++.+..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 799999999999999998743
No 487
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=80.84 E-value=1.9 Score=32.92 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeEEEeCCe
Q 005024 671 DVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHT 710 (718)
Q Consensus 671 ~~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~g~i~~~~~~ 710 (718)
.++..+| |+..|+++.++++.|..|.+.|+|.....+
T Consensus 25 ~~s~~eL---A~~lglsr~tv~~~l~~L~~~G~I~~~~~G 61 (67)
T 2heo_A 25 PVAIFQL---VKKCQVPKKTLNQVLYRLKKEDRVSSPSPK 61 (67)
T ss_dssp CEEHHHH---HHHHCSCHHHHHHHHHHHHHTTSEEEEETT
T ss_pred CcCHHHH---HHHHCcCHHHHHHHHHHHHHCCcEecCCCc
Confidence 4666654 667799999999999999999998765443
No 488
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=80.50 E-value=2 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.|.|+|+||+|||+++..++..+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988764
No 489
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=80.45 E-value=0.39 Score=46.23 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=20.4
Q ss_pred ccceeeecCCCcchHHHHHHH-HHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKH-IINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~-i~~~ 392 (718)
..++|+++|++|+|||+|++. +...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 345899999999999999987 4433
No 490
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=80.17 E-value=1.2 Score=42.37 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.2
Q ss_pred eeeecCCCcchHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIIN 391 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~ 391 (718)
++++.+|+|+|||.++-..+.
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999998866654
No 491
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=80.04 E-value=7.1 Score=29.84 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 005024 566 PCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRL 632 (718)
Q Consensus 566 p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ai~l 632 (718)
..+++.+...|.++. -|....+++-|..+|+-.++.+|+.+||+-|++.
T Consensus 17 ~~~~~~v~~~L~e~~------------------~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 17 QEYEPRVVNQLLEFT------------------FRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp CCBCTHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 467888888888763 4677888888888888889999999999999874
No 492
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=79.96 E-value=0.7 Score=49.63 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 005024 672 VSYAHALNWISRKGYSEAQLKECLEEYAAL 701 (718)
Q Consensus 672 ~~~~~l~~~~~~~g~~~~~~~~~l~~l~~~ 701 (718)
+.-+...+.|.-.|.+..+|.+.|+.|.++
T Consensus 396 ~~~sr~~ria~gsg~~~~~v~~ll~~~~~~ 425 (433)
T 3kl4_A 396 IDKSRMRRIAEGSGLEVEEVRELLEWYNNM 425 (433)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 566777788889999999999999988764
No 493
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=79.85 E-value=0.73 Score=48.45 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=20.2
Q ss_pred cccce-eeecCCCcchHHHHHHHHHHH
Q 005024 367 RGDLH-ICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 367 r~~i~-vLl~G~pGtGKt~la~~i~~~ 392 (718)
|..+. |.|+|+||+|||+|++.+...
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 33445 889999999999999998754
No 494
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=79.77 E-value=6.1 Score=33.47 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhhcCCCCcccCHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 005024 549 LEPAILRAYISAARRLSPCVPRELEEYIAAAYSNIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDE 628 (718)
Q Consensus 549 ~~~~~l~~~i~~~~~~~p~ls~~~~~~l~~~y~~lr~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~ 628 (718)
++...+++...... ...+++++.+.+.+.. -+.++.+.+-|.+.|+-.++.+|+.+||..
T Consensus 8 lP~a~I~Ri~r~~g--~~rIS~~a~~~l~e~l------------------~~f~~~v~~da~~~A~HA~RKTV~~eDV~l 67 (111)
T 3b0c_T 8 IASSLIKQIFSHYV--KTPVTRDAYKIVEKCS------------------ERYFKQISSDLEAYSQHAGRKTVEMADVEL 67 (111)
T ss_dssp --CHHHHHHHHHHH--CSCBCHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCHHHHHHHHHHCC--CCccCHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHcCCCcCCHHHHHH
Confidence 44445666554442 3468999988888753 356788999999999999999999999999
Q ss_pred HHHH
Q 005024 629 ALRL 632 (718)
Q Consensus 629 ai~l 632 (718)
|++-
T Consensus 68 alrr 71 (111)
T 3b0c_T 68 LMRR 71 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=79.71 E-value=0.82 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.7
Q ss_pred eeeecCCCcchHHHHHHHHHHHCC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVAP 394 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~~ 394 (718)
.+.|+||.|+|||+|++.++...+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999998764
No 496
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=79.61 E-value=0.83 Score=46.62 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.0
Q ss_pred eeeecCCCcchHHHHHHHHHHH
Q 005024 371 HICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~ 392 (718)
.|.|+|+||+|||+|++++...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999998754
No 497
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=79.58 E-value=0.91 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.8
Q ss_pred eeeecCCCcchHHHHHHHHHHHC
Q 005024 371 HICLMGDPGVAKSQLLKHIINVA 393 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~i~~~~ 393 (718)
.|+|+|.||+|||++++.+++.+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999987
No 498
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=79.43 E-value=0.75 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.5
Q ss_pred ceeeecCCCcchHHHHHHHHHHH
Q 005024 370 LHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 370 i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
++|+++|++|+|||+|+.++...
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988753
No 499
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=79.39 E-value=0.86 Score=49.23 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=21.8
Q ss_pred ccceeeecCCCcchHHHHHHHHHHH
Q 005024 368 GDLHICLMGDPGVAKSQLLKHIINV 392 (718)
Q Consensus 368 ~~i~vLl~G~pGtGKt~la~~i~~~ 392 (718)
+.+.+.|+|+||+|||+|++.+...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998765
No 500
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.33 E-value=0.83 Score=50.65 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=23.5
Q ss_pred eeeecCCCcchHHHHHHH--HHHHCC---CceeecCC
Q 005024 371 HICLMGDPGVAKSQLLKH--IINVAP---RGVYTTGR 402 (718)
Q Consensus 371 ~vLl~G~pGtGKt~la~~--i~~~~~---~~~~~~~~ 402 (718)
.++|+||+|+|||+|++. ++...+ ..++..|.
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 589999999999999998 455543 23555544
Done!