BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005025
(718 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 333 ILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAM-LASIV 375
++H D P N+ TSSGQI DFGL R + F M L S+V
Sbjct: 141 VVHRDLKPQNILVTSSGQIKLADFGL----ARIYSFQMALTSVV 180
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 333 ILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAM-LASIV 375
++H D P N+ TSSGQI DFGL R + F M L S+V
Sbjct: 141 VVHRDLKPQNILVTSSGQIKLADFGL----ARIYSFQMALTSVV 180
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 333 ILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAM-LASIV 375
++H D P N+ TSSGQI DFGL R + F M L S+V
Sbjct: 141 VVHRDLKPQNILVTSSGQIKLADFGL----ARIYSFQMALTSVV 180
>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With
Sb203580
Length = 362
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 328 LLETGILHADPHPGNLRYTSSGQIGFLDFGL 358
L E G++H D HPGN+ + I DF L
Sbjct: 150 LHEAGVVHRDLHPGNILLADNNDITICDFNL 180
>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs
Resolution)
Length = 362
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 328 LLETGILHADPHPGNLRYTSSGQIGFLDFGL 358
L E G++H D HPGN+ + I DF L
Sbjct: 150 LHEAGVVHRDLHPGNILLADNNDITICDFNL 180
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 332 GILHADPHPGNLRYTSSGQIGFLDFGL 358
GI+H D PGNL ++ LDFGL
Sbjct: 148 GIIHRDLKPGNLAVNEDCELKILDFGL 174
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 16/70 (22%)
Query: 301 HLDRQKLDAKWRLLDLVNKGVEAT-----LVQLL-------ETGILHADPHPGNLRYTSS 348
HLD+ D K +LLD+ G+E+ L+QLL + +LH D P NL
Sbjct: 81 HLDQ---DLK-KLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINRE 136
Query: 349 GQIGFLDFGL 358
G++ DFGL
Sbjct: 137 GELKIADFGL 146
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 16/70 (22%)
Query: 301 HLDRQKLDAKWRLLDLVNKGVEAT-----LVQLL-------ETGILHADPHPGNLRYTSS 348
HLD+ D K +LLD+ G+E+ L+QLL + +LH D P NL
Sbjct: 81 HLDQ---DLK-KLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINRE 136
Query: 349 GQIGFLDFGL 358
G++ DFGL
Sbjct: 137 GELKIADFGL 146
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 16/70 (22%)
Query: 301 HLDRQKLDAKWRLLDLVNKGVEAT-----LVQLL-------ETGILHADPHPGNLRYTSS 348
HLD+ D K +LLD+ G+E+ L+QLL + +LH D P NL
Sbjct: 81 HLDQ---DLK-KLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINRE 136
Query: 349 GQIGFLDFGL 358
G++ DFGL
Sbjct: 137 GELKIADFGL 146
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 332 GILHADPHPGNLRYTSSGQIGFLDFGL 358
G++H D PGNL ++ LDFGL
Sbjct: 146 GVVHRDLKPGNLAVNEDCELKILDFGL 172
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 158 SFISEEPVAAASFGQVYRGSTLDGSIVAVK 187
+F ++ + FG+VY+G DG++VAVK
Sbjct: 39 NFSNKNILGRGGFGKVYKGRLADGTLVAVK 68
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 332 GILHADPHPGNLRYTSSGQIGFLDFGL 358
G++H D PGNL ++ LDFGL
Sbjct: 164 GVVHRDLKPGNLAVNEDCELKILDFGL 190
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 158 SFISEEPVAAASFGQVYRGSTLDGSIVAVK 187
+F ++ + FG+VY+G DG +VAVK
Sbjct: 31 NFXNKNILGRGGFGKVYKGRLADGXLVAVK 60
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 312 RLLDLVNKGVEATLVQLLET-GILHADPHPGNLRYTSSGQIGFLDFGLLCRM 362
R+L + + L L E G++H D P N+ GQI DFG+ R+
Sbjct: 124 RILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRL 175
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 314 LDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQ 367
+ +V K L L + I+H D GN+ +T G I DFG+ + R Q
Sbjct: 137 IQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ 190
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 314 LDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQ 367
+ +V K L L + I+H D GN+ +T G I DFG+ + R Q
Sbjct: 137 IQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQ 190
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 314 LDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQ 367
+ +V K L L + I+H D GN+ +T G I DFG+ + R Q
Sbjct: 137 IQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQ 190
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 118 IGSDISKALSELHDQIP-----PFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQ 172
+GS SKA + ++D + PF S + +++ E E+ +F + + FG+
Sbjct: 1 MGSKYSKATNSINDALSSSYLVPF-ESYRVPLVDLE-----EATNNFDHKFLIGHGVFGK 54
Query: 173 VYRGSTLDGSIVAVKVQRP 191
VY+G DG+ VA+K + P
Sbjct: 55 VYKGVLRDGAKVALKRRTP 73
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 118 IGSDISKALSELHDQIP-----PFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQ 172
+GS SKA + ++D + PF S + +++ E E+ +F + + FG+
Sbjct: 1 MGSKYSKATNSINDALSSSYLVPF-ESYRVPLVDLE-----EATNNFDHKFLIGHGVFGK 54
Query: 173 VYRGSTLDGSIVAVKVQRP 191
VY+G DG+ VA+K + P
Sbjct: 55 VYKGVLRDGAKVALKRRTP 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,965,086
Number of Sequences: 62578
Number of extensions: 799487
Number of successful extensions: 2440
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2424
Number of HSP's gapped (non-prelim): 21
length of query: 718
length of database: 14,973,337
effective HSP length: 106
effective length of query: 612
effective length of database: 8,340,069
effective search space: 5104122228
effective search space used: 5104122228
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)