BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005025
(718 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 315 bits (808), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 174/497 (35%), Positives = 279/497 (56%), Gaps = 30/497 (6%)
Query: 29 YNPQDVADYFNCRPHIVGLRLLEVGSCFLSAVIRIRTSRIRKFLRSDLEKDFDGNISQYN 88
Y+P + +++ RP V RL+ + L ++ I ++R D +S+
Sbjct: 53 YHPDLIMEFYRKRPLQVLGRLINILFPLLRFILGIWWEKLR---------GKDPTVSRAK 103
Query: 89 FGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEE 148
+ L+E + NLGPT+IKVGQ+LSTRPD++ L+ L DQ+P FP +A + IEEE
Sbjct: 104 -AIQLRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEE 162
Query: 149 LGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILR-IG 207
LG+P E ++ +S EP+AAAS GQVY+G G VAVKVQRP+L + DIYI+R +
Sbjct: 163 LGAPAEEIYAELSPEPIAAASLGQVYKGKLKTGEAVAVKVQRPDLVRRITLDIYIMRSLS 222
Query: 208 LGLLQKIAKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYL 267
L + + + +SDL DEL + E++Y EA N +F + + P I+VP ++
Sbjct: 223 LWARRSVKRLRSDLVAITDELASRVFEEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQY 282
Query: 268 SRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQ 327
+ +RVLTMEW+ G T++ ++ Q +DA LV GV+ +L Q
Sbjct: 283 TGRRVLTMEWVEGIKLTNIKAIQA-------------QGIDAT----HLVEVGVQCSLRQ 325
Query: 328 LLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVH 387
LLE G HADPHPGNL + G++ +LDFG++ ++ ++ ++ ++VH+VN D+ SL
Sbjct: 326 LLEHGFFHADPHPGNLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAK 385
Query: 388 SLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPY 447
++D ++P T+ + L G + ++ F + ++ ++ ++ FR+P Y
Sbjct: 386 DYVKLDFLKPDTDLKPIIPALGQVFGNA-LGASVAELNFKSITDQMSAMMYEFPFRVPAY 444
Query: 448 YTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVATRKILHSVVFNKKKEFQ 507
Y L++RS+ +LEG+AI DP+FK AYP++ ++LLT+ S R L ++F K+ F+
Sbjct: 445 YALIIRSMVTLEGIAIGIDPNFKVLSKAYPYIAKRLLTDQSEELRTSLKELLF-KEGSFR 503
Query: 508 WQRLSLFLRVGATRKGL 524
W RL LR G
Sbjct: 504 WNRLENLLRNAKNSPGF 520
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 306 bits (785), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 200/564 (35%), Positives = 288/564 (51%), Gaps = 68/564 (12%)
Query: 23 KPLP--------EVYNPQDVADYFNCRPHIVGLRLLEVGSCFLSAVIRIRTSRIRKFLRS 74
KPLP YN Q +A+Y+ RP V R LEV F FL
Sbjct: 5 KPLPPQSELDNIRRYNAQAIANYYRRRPWKVLWRALEVVWSF------------GFFLTC 52
Query: 75 DLEKDFDGNISQY--NFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQ 132
L + G + Y L+E + LGPTFIKVGQ+LSTRPD++ D + L +L DQ
Sbjct: 53 LLWDQWTGQVEYYKRQRAEDLRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQ 112
Query: 133 IPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPN 192
+PPF +A +++EE+LG V+ + IS PVAAAS GQVYR G VAVKVQRPN
Sbjct: 113 LPPFDNDLAFQLMEEQLGMKVDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPN 172
Query: 193 LRHVVVRDIYILRIGLGLLQKIAK-----RKSDLRLYADELGKGLVGELDYTLEAANASE 247
LR + D+Y++R+G QK + DL L DE G L E+DY E NA +
Sbjct: 173 LRPRLSLDLYLMRLG---AQKFGRFLPLNLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEK 229
Query: 248 FQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKL 307
F E+ + VP ++ S ++VLT+EW+ G TD + + +D S
Sbjct: 230 FAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIR-AAGLDPS--------- 279
Query: 308 DAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQ 367
D++ GV + L QLLE G HADPHPGNL T G++ ++DFG++ ++E +
Sbjct: 280 -------DIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMDQLEPGTK 332
Query: 368 FAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFS 427
+ +SIV ++N D+ +L + + P T+ + LE+ G + D F
Sbjct: 333 ETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFGSA-IGQSVQDFNFK 391
Query: 428 RVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
+ + Y FR+P + L++RSL + EGLA++ DP+FK E AYP+V ++LLT
Sbjct: 392 TITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGE 451
Query: 488 SVATRKILHSVVFNKKKEFQWQRLSLFLRVGATRKGLQQVIAPKTETTLDYLPNRVGVFD 547
S R+ L V+F K +FQWQRL L + +++T D LP
Sbjct: 452 SPQLRRQLIDVLF-KNGKFQWQRLENMLSIA------------RSDTKFDLLP------- 491
Query: 548 AANLVLRLLRTNNGVVLRRLLMTA 571
A L L+ L + G+ LRR ++ A
Sbjct: 492 TAQLGLQFLFSEEGLYLRRQILLA 515
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 285 bits (728), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/426 (37%), Positives = 235/426 (55%), Gaps = 22/426 (5%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + NLGP+FIK GQ L+ RPDII D L L D +PPFP +A IIEEELG P
Sbjct: 170 LRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQP 229
Query: 153 VESFFSFISEEPVAAASFGQVYRGS-TLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLL 211
+E+ FS IS + +AAAS GQVYR + G VA+KVQRP + ++ RD+++ R L
Sbjct: 230 LENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFL 289
Query: 212 QKIAKRK--SDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSR 269
+ +K + L DE G+ L+ ELDYTLEA N +F E+ P + +P V++ L
Sbjct: 290 NGFSLQKLGCNAELIVDEFGEKLLEELDYTLEARNIEDFLENFKDDPTVKIPGVYKNLCG 349
Query: 270 KRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLL 329
RVL MEW+ G TD ++ DA L + GV A L QLL
Sbjct: 350 PRVLVMEWIDGIRCTDPQAIK-----------------DAGIDLNGFLTVGVSAALRQLL 392
Query: 330 ETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSL 389
E G+ H DPHPGN+ G+I ++DFG + + ++++ ++ ++VH VN D+ + +
Sbjct: 393 EFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMANDF 452
Query: 390 TEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYT 449
T + + T+ + LE A+ + G+ D F V G+ + + R+P ++
Sbjct: 453 TRLGFLAKDTDVSPIVPALE-AIWQNSAGKGLADFNFRSVTGQFNKLVYDFPIRIPERFS 511
Query: 450 LVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVATRKILHSVVFNKKKEFQWQ 509
LV+RSL + EG+ P FK E AYP+V ++LLT+ + A R+ L V+F K FQW+
Sbjct: 512 LVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLF-KDGVFQWK 570
Query: 510 RLSLFL 515
RL L
Sbjct: 571 RLENLL 576
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/545 (31%), Positives = 281/545 (51%), Gaps = 52/545 (9%)
Query: 28 VYNPQDVADYFNCRPHIVGLRLLEVGSCFLSAVIRIRTSRIRKFLRSDLEKDFDGNISQY 87
+Y+P+ +A +P R LE+ +++ + + L +++K
Sbjct: 95 IYSPELIARKHGSQPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKR-------- 146
Query: 88 NFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEE 147
+ L+ LGPTF+K+GQ LSTRPD+ D + L+EL D +P FP + A IE
Sbjct: 147 --AIELRRIFTRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIER 204
Query: 148 ELGSPVESFFSFISEEPVAAASFGQVYRGS-TLDGSIVAVKVQRPNLRHVVVRDIYILRI 206
EL +E+ FS +S EP+AAAS GQVY+ G +VAVKVQRP + + D Y++R
Sbjct: 205 ELDLSLETIFSSVSPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIR- 263
Query: 207 GLGLL--QKIAKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVF 264
G+G L + + +D+ DE + EL+Y EA NA F++ ++ + VP +F
Sbjct: 264 GVGKLINKYVDFITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIF 323
Query: 265 RYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEAT 324
+ ++VLTMEW+ G + +++ + ++LDLVN G++ +
Sbjct: 324 WDYTSRKVLTMEWVEGTKLNEQLAIESQG-----------------LKVLDLVNTGIQCS 366
Query: 325 LVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQS 384
L QLLE G HADPHPGNL T G++ FLDFG++ + +FA++ +VH+VN D+++
Sbjct: 367 LRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEA 426
Query: 385 LVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRM 444
+ + + P + + L D + + ++ F ++ + ++ +Y F +
Sbjct: 427 MARDYYALKFLSPDVDVTPIIPALRDFFDDA-LNYTVSELNFKTLVDGLGAVFYQYPFNV 485
Query: 445 PPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVATRKILHSVVFNKKK 504
PPYY L+LRSL LEGLA+ DP+FK A+YP+ ++LLT+ + R L ++F K
Sbjct: 486 PPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLF-KDG 544
Query: 505 EFQWQRLSLFLRVGATRKGLQQVIAPKTETTLDYLPNRVGVFDAANLVLRLLRTNNGVVL 564
+F+W RL L+ G+ + DA VL+LL NG L
Sbjct: 545 KFRWNRLENLLQQGSKDRDF-------------------SAKDALQPVLKLLLDPNGEEL 585
Query: 565 RRLLM 569
R L++
Sbjct: 586 RLLVI 590
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 269 bits (687), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 166/501 (33%), Positives = 265/501 (52%), Gaps = 38/501 (7%)
Query: 3 DLKALEAYANYFYHMLKIWSKPLPEVYNPQDVADYFNCRPHIVGLRLLEVGSCFLSAVIR 62
D+ + + + Y + + + L E YN + + +P I+ RL ++G+ F S
Sbjct: 44 DVDSFTSKSGYLFSLSADEADSLSE-YNFPRIDGMYKKKPLILLRRLAQIGTTF-SYWFG 101
Query: 63 IRTSRIRKFLRSDLEKDFDGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDI 122
+R + RSD + F ++ L++ ++ LGP ++K+ Q++S+RPD+I
Sbjct: 102 LRLAD-EALERSD--QMFKVRAAE------LRKLLVELGPAYVKIAQAVSSRPDLIPPIY 152
Query: 123 SKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGS-TLDG 181
LS L DQI PF +A +IE+ELG P++ FS IS EPVAAAS GQVY+ G
Sbjct: 153 LDELSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSG 212
Query: 182 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYADELGKGLVGELDYTLE 241
+VAVKVQRP +R + D ILR GL++K + SDL DE L E+DY E
Sbjct: 213 KVVAVKVQRPGVRAAIALDTLILRYIAGLIKKAGRFNSDLEAVVDEWATSLFKEMDYLNE 272
Query: 242 AANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTH 301
A N +F++ + + VPK++ S +VL MEW+ G
Sbjct: 273 AQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEG--------------------- 311
Query: 302 LDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCR 361
QKL+ + L LV GV + QLLE G HADPHPGN T GQ+ +LDFG++
Sbjct: 312 ---QKLN-EVNDLYLVEVGVYCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGD 367
Query: 362 MERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGI 421
+ + + + +H+VN D+++L + ++ P VT L D + G+
Sbjct: 368 FRPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKSAVTKALTDVFQDA-ISRGV 426
Query: 422 PDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQ 481
++ F +LG + ++ FR+PPY++LV+RSLA LEG+AI P++K + YP++ +
Sbjct: 427 RNISFGDLLGDLGKTMYRFKFRIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPWIAR 486
Query: 482 KLLTENSVATRKILHSVVFNK 502
K+LT++S + L ++++ +
Sbjct: 487 KILTDSSPQLKSSLQNLLYEE 507
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/406 (32%), Positives = 212/406 (52%), Gaps = 36/406 (8%)
Query: 86 QYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKII 145
+Y L + +L LGPTFIK+GQSLSTR DII ++ +A ++L D++PPF A+ +I
Sbjct: 54 RYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVI 113
Query: 146 EEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILR 205
E+EL ++ F P+A+AS GQV+R G V VKVQRP L ++ D +L
Sbjct: 114 EQELHGAIDEIFQQFEVTPLASASLGQVHRAVLPTGEAVVVKVQRPGLDSLLNLDFELLH 173
Query: 206 IGLGLLQKIAKR----------KSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPF 255
L ++AKR K ++ E L E+DY E NA F+++ + +
Sbjct: 174 QTL----RLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADY 229
Query: 256 PFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLD 315
P + VP+++ + + VLT+E++ G VD DRQ L+ LD
Sbjct: 230 PRVRVPEIYWQYTTRMVLTLEYL------------PGIKVD------DRQALETAGINLD 271
Query: 316 LV-NKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASI 374
LV G+ A L QLL G +DPHPGN+ S G + F DFG + ++ + M+ +
Sbjct: 272 LVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTF 331
Query: 375 VHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVK-FSRVLGKI 433
++ D ++ +L M +V P + + + L F+D D+K F +V ++
Sbjct: 332 FAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLD--NFRDKPIDIKAFDQVGEEV 389
Query: 434 WSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
+++ + FR+PP T +L+S+++L+G+A A DP + A+ PF+
Sbjct: 390 YAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYNLIAASQPFI 435
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 145/494 (29%), Positives = 235/494 (47%), Gaps = 55/494 (11%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
++E +L+LGPTFIKVGQ STR D+ ++ + LS+L D++P F A IIEEELG P
Sbjct: 88 IRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKP 147
Query: 153 VESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQ 212
+ + P+AAAS GQV++ G V VKVQRP L+ + D+ IL+ Q
Sbjct: 148 IAKLYRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQ 207
Query: 213 KIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRK 270
K R D +E K L E DY E +A F+ + ++ VP+V+ +
Sbjct: 208 NHPKWGRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTST 267
Query: 271 RVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLE 330
++LT+E++ G I +S +++ + L+R+ +L G A L QLL
Sbjct: 268 QILTLEYLPG------IKISHYDALEAAG--LERK---------ELAQLGARAYLFQLLN 310
Query: 331 TGILHADPHPGNLRYT-SSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSL 389
G HADPHPGNL + +G++ F DFG++ + + ++ ++ + + + +V+SL
Sbjct: 311 HGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSL 370
Query: 390 TEMDVVRPGTNTLRVTMDLEDALGEVEF-KDGIPDVKF-----SRVLGKIWSIALKYHFR 443
+ L+ T D+ V+F D D F +++ ++ IA FR
Sbjct: 371 VAL-------GALKETEDMGPIRRSVQFLLDNFMDKPFEEQSITKISDDLYEIAYDQPFR 423
Query: 444 MPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVATRKILHSVVFNKK 503
P +T V+R+ ++LEG+ DP F A PF +Q + N FN
Sbjct: 424 FPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSNG-----------FNPA 472
Query: 504 KEFQWQRLSLFLRVGATRKGLQQVIAPKTETTLDYLPNRVGVFDAANLVLRLLRTNNGVV 563
+ ++VG + GL + I E +LD L D ++ +R+ T +
Sbjct: 473 GNIMDELGRQAVQVGNSALGLPRRI----EDSLDRL-------DRGDIRVRVRSTETDRL 521
Query: 564 LRRLLMTADGASLI 577
LRR+ G + +
Sbjct: 522 LRRMGTMQMGTNYV 535
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 195/391 (49%), Gaps = 20/391 (5%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP FIK GQ LSTRPD+I D + L++L D++PPF ++ + IE+ LG
Sbjct: 54 LRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQS 113
Query: 153 VESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQ 212
+E ++ EP+A+AS QV++ G VAVKV RPNL V+ +D+ ++R G G ++
Sbjct: 114 IEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPVIEQDLSLMRFGAGWVE 173
Query: 213 KIAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRK 270
++ L R E K L ELD EAANAS+ + + VPKVF
Sbjct: 174 RLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYDYCTS 233
Query: 271 RVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLE 330
VLT+EWM G +D+ L DG H L + GVE Q+
Sbjct: 234 DVLTIEWMDGTPVSDIAKLKA----DGIDLH-------------KLADYGVEIFFTQVFR 276
Query: 331 TGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLT 390
G HAD HPGN+ + + LDFG++ + + + + + N D++ + +
Sbjct: 277 DGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHI 336
Query: 391 EMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTL 450
E V T + + A+ E F I + F VL +++ ++ +++ + P L
Sbjct: 337 ESGWVPADTRAEELEAAVR-AVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVL 395
Query: 451 VLRSLASLEGLAIAGDPHFKTFEAAYPFVIQ 481
+ ++L ++EGL DP ++ A PF+++
Sbjct: 396 LQKTLLNIEGLGRQLDPDLDLWKTAKPFLVK 426
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 195/392 (49%), Gaps = 22/392 (5%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP FIK GQ LSTRPD+I D + L++L D++PPF ++ + IE+ LG
Sbjct: 54 LRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQS 113
Query: 153 VESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQ 212
+E ++ EP+A+AS QV++ G VAVKV RPNL ++ +D+ ++R G ++
Sbjct: 114 IEKLYAEFETEPIASASIAQVHKARLHSGERVAVKVLRPNLLPLIEQDLSLMRFGAAWVE 173
Query: 213 KI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSR 269
++ +R L + A E K L ELD EAANA + + + VPKVF
Sbjct: 174 RLFSDGRRLKPLEVVA-EFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYDYCT 232
Query: 270 KRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLL 329
VLT+EWM G D+ L DG H L + GVE Q+
Sbjct: 233 SDVLTIEWMDGTPVADIAKLKA----DGIDLH-------------KLADYGVEIFFTQVF 275
Query: 330 ETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSL 389
G HAD HPGN+ + + LDFG++ + + + + + N D++ + +
Sbjct: 276 RDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAH 335
Query: 390 TEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYT 449
E V T + + A+ E F I + F VL +++ ++ +++ + P
Sbjct: 336 IESGWVPADTRAEELEAAVR-AVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLV 394
Query: 450 LVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQ 481
L+ ++L ++EGL DP ++ A PF+++
Sbjct: 395 LLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVK 426
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 200/400 (50%), Gaps = 32/400 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L+ L D++PPFP +A+K IEE+L
Sbjct: 57 GARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQL 116
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+ +E F+ EP+A+AS QV+ G V VKV RPNL V+ DI L I
Sbjct: 117 GAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILAR 176
Query: 210 LLQKI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
L +++ A+R + + +D K +V ELD EAANAS+ + + P ++VP+V+
Sbjct: 177 LAERVSSEARRLHPVEVVSD-YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
R +VL ME + G TDL +L Q+ D K L +GVE
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRD-------------QRTDFK----ALAERGVEIFFT 278
Query: 327 QLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ HAD HPGN+ R S Q +D G++ + + Q + +++ D+
Sbjct: 279 QVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDY 338
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSRVLGKIWSIALK 439
+ + + V T D E A+ E F+ + D+ F +VL +++ A +
Sbjct: 339 RKVAQLHIDSGWVPAETK----VNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTARR 394
Query: 440 YHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
++ + P L+ ++L ++EGL P + A PF+
Sbjct: 395 FNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 200/400 (50%), Gaps = 32/400 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L+ L D++PPFP +A+K IEE+L
Sbjct: 57 GARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQL 116
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+ +E F+ EP+A+AS QV+ G V VKV RPNL V+ DI L I
Sbjct: 117 GAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILAR 176
Query: 210 LLQKI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
L +++ A+R + + +D K +V ELD EAANAS+ + + P ++VP+V+
Sbjct: 177 LAERVSSEARRLHPVEVVSD-YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
R +VL ME + G TDL +L Q+ D K L +GVE
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRD-------------QRTDFK----ALAERGVEIFFT 278
Query: 327 QLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ HAD HPGN+ R S Q +D G++ + + Q + +++ D+
Sbjct: 279 QVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDY 338
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSRVLGKIWSIALK 439
+ + + V T D E A+ E F+ + D+ F +VL +++ A +
Sbjct: 339 RKVAQLHIDSGWVPAETK----VNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTARR 394
Query: 440 YHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
++ + P L+ ++L ++EGL P + A PF+
Sbjct: 395 FNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 200/400 (50%), Gaps = 32/400 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L+ L D++PPFP +A+K IEE+L
Sbjct: 57 GARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQL 116
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+ +E F+ EP+A+AS QV+ G V VKV RPNL V+ DI L I
Sbjct: 117 GAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILAR 176
Query: 210 LLQKI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
L +++ A+R + + +D K +V ELD EAANAS+ + + P ++VP+V+
Sbjct: 177 LAERVSSEARRLHPVEVVSD-YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
R +VL ME + G TDL +L Q+ D K L +GVE
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRD-------------QRTDFK----ALAERGVEIFFT 278
Query: 327 QLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ HAD HPGN+ R S Q +D G++ + + Q + +++ D+
Sbjct: 279 QVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDY 338
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSRVLGKIWSIALK 439
+ + + V T D E A+ E F+ + D+ F +VL +++ A +
Sbjct: 339 RKVAQLHIDSGWVPAETK----VNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTARR 394
Query: 440 YHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
++ + P L+ ++L ++EGL P + A PF+
Sbjct: 395 FNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 200/400 (50%), Gaps = 32/400 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L+ L D++PPFP +A+K IEE+L
Sbjct: 57 GARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQL 116
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+ +E F+ EP+A+AS QV+ G V VKV RPNL V+ DI L I
Sbjct: 117 GAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILAR 176
Query: 210 LLQKI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
L +++ A+R + + +D K +V ELD EAANAS+ + + P ++VP+V+
Sbjct: 177 LAERVSSEARRLHPVEVVSD-YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
R +VL ME + G TDL +L Q+ D K L +GVE
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRD-------------QRTDFK----ALAERGVEIFFT 278
Query: 327 QLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ HAD HPGN+ R S Q +D G++ + + Q + +++ D+
Sbjct: 279 QVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDY 338
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSRVLGKIWSIALK 439
+ + + V T D E A+ E F+ + D+ F +VL +++ A +
Sbjct: 339 RKVAQLHIDSGWVPAETK----VNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTARR 394
Query: 440 YHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
++ + P L+ ++L ++EGL P + A PF+
Sbjct: 395 FNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 176 bits (445), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 197/400 (49%), Gaps = 32/400 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L+ L DQ+PPFP A+ +IE +L
Sbjct: 56 GARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQL 115
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+PV F+ +P+A+AS QV+ G V VKV RP L+ V+ +D+ L
Sbjct: 116 GAPVSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKVVRPGLKPVIRQDL----AWLF 171
Query: 210 LLQKIAKRKS-DLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKV 263
LL +IA+R S D R + K + ELD EAANAS+ + + P ++VP+V
Sbjct: 172 LLARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQV 231
Query: 264 FRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEA 323
+ L R +VL ME + G TDL +L+ Q+ D K L +GVE
Sbjct: 232 YWDLCRHQVLVMERIYGVPVTDLATLAD-------------QRTDMKL----LAERGVEI 274
Query: 324 TLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVN 379
Q+ HAD HPGN+ R S Q +D G++ + + Q + +++
Sbjct: 275 FFTQVFRDSFFHADMHPGNIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFK 334
Query: 380 GDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALK 439
D++ + + V T + + E F+ + D+ F ++L +++ A +
Sbjct: 335 RDYRKVAQLHIDSGWVPADTKVNEFEAAIR-TVCEPIFEKPLKDISFGQLLLRLFQTARR 393
Query: 440 YHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
++ + P L+ ++L ++EGL P + A PF+
Sbjct: 394 FNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPFL 433
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 205/415 (49%), Gaps = 26/415 (6%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G+ L+ + LGP F+K GQ LSTR D+I DI+ L++L D++PPFP ++ + + L
Sbjct: 50 GVRLRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSL 109
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G P+E F+ +PVA+AS QV+ G DG VAVKV RPN+ +++ D+ +LR+
Sbjct: 110 GRPIEEVFASFDADPVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAAA 169
Query: 210 LLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYL 267
L++++ R+ R E L ELD EAANA++ + + I +P++ L
Sbjct: 170 WLERLSPDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIWDL 229
Query: 268 SRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQ 327
S VL ME M G P I + +D + L GV Q
Sbjct: 230 SSAEVLVMERMHG-VPISQIETLRAAGID----------------IPKLARDGVTIFFTQ 272
Query: 328 LLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQ 383
+ G HAD HPGN+ +++ G+ LDFG++ ++ + + + + + D++
Sbjct: 273 VFRDGFFHADMHPGNIMVSTAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYR 332
Query: 384 SLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFR 443
+ E V P + + A+ E F + D+ +VL +++ + +++
Sbjct: 333 RVAELHIESGWV-PASTRVDELEGAVRAVCEPHFDRPLKDISLGQVLLRLFQTSRRFNVE 391
Query: 444 MPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVATRKILHSV 498
+ P L+ ++L ++EGL DP ++ A PF +++ + E V R +L S+
Sbjct: 392 IQPQLVLLQKTLLNVEGLGRQLDPELDLWQTAKPF-LERWMNEQ-VGWRALLGSI 444
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 193/399 (48%), Gaps = 30/399 (7%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L L D++PPF +++K+IEE+L
Sbjct: 56 GARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQL 115
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G + FS EP+A+AS QV+ G V VKV RP L+ ++ +D+ L I
Sbjct: 116 GKKISEVFSRFDVEPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIAQDLAWLFI--- 172
Query: 210 LLQKIAKRKSDLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVF 264
L + K +D RL + K + ELD EAANAS+ + + P ++VP+V+
Sbjct: 173 LARAAEKVSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVY 232
Query: 265 RYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEAT 324
R +VL ME + G TDL +L+ Q+ D K L +GVE
Sbjct: 233 WDWCRPKVLVMERIYGIQVTDLATLAD-------------QRTDMKM----LAERGVEIF 275
Query: 325 LVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASIVHIVNG 380
Q+ HAD HPGN+ ++ S Q +D G++ + + Q + ++
Sbjct: 276 FTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKR 335
Query: 381 DWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKY 440
D++ + + V P L + E F+ + D+ F +VL +++ A ++
Sbjct: 336 DYRRVAQLHIDSGWV-PAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRF 394
Query: 441 HFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
+ + P L+ ++L ++EGL P + A PF+
Sbjct: 395 NMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFL 433
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 166 bits (420), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 208/438 (47%), Gaps = 52/438 (11%)
Query: 62 RIRTSRIRKFLR-SDLEKDFDGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGS 120
R+ R+R LR + + + FD G+ L+ + +LGP F+K GQ LSTR D++
Sbjct: 25 RVNDRRVRLLLRITTIGRKFDAPP-----GVRLRLALESLGPIFVKFGQVLSTRRDLLPV 79
Query: 121 DISKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RG 176
DI+ L++L DQ+PPF ++A++++E LG+PV+ F PVA+AS QV+ +
Sbjct: 80 DIADELAKLQDQVPPFESAVAIRLVENALGAPVDVLFDDFERVPVASASIAQVHFATVKA 139
Query: 177 STLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYAD---------- 226
G VAVKV RPN+ V+ D L LL+ IA RL+AD
Sbjct: 140 GQHAGKAVAVKVLRPNMLPVIDSD-------LALLRDIAVWAE--RLWADGKRLKPREVV 190
Query: 227 -ELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTD 285
E K L ELD EAAN S+ + + + + VP+++ VL ME MVG P
Sbjct: 191 AEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVG-VPIS 249
Query: 286 LISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRY 345
+ + VD + L +GVE Q+ G HAD HPGN++
Sbjct: 250 QVETLRAAGVD----------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQV 293
Query: 346 TSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNT 401
+ G+ LDFG++ + + + + + D+ + E V P T
Sbjct: 294 SLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPTTRV 353
Query: 402 LRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGL 461
+ + A+ E F + D+ +VL +++S + +++ + P L+ +++ ++EGL
Sbjct: 354 EELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGL 412
Query: 462 AIAGDPHFKTFEAAYPFV 479
+ DP ++ A P++
Sbjct: 413 GRSLDPELDLWKTAKPYL 430
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 208/438 (47%), Gaps = 52/438 (11%)
Query: 62 RIRTSRIRKFLR-SDLEKDFDGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGS 120
R+ R+R LR + + + FD G+ L+ + +LGP F+K GQ LSTR D++
Sbjct: 25 RVNDRRVRLLLRITTIGRKFDAPP-----GVRLRLALESLGPIFVKFGQVLSTRRDLLPV 79
Query: 121 DISKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RG 176
DI+ L++L DQ+PPF ++A+ ++E+ LG+PV+ F PVA+AS QV+ +
Sbjct: 80 DIANELAKLQDQVPPFDSAVAIGLVEKSLGAPVDVLFDDFERVPVASASIAQVHFATVKA 139
Query: 177 STLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYAD---------- 226
G VAVKV RPN+ V+ D L LL+ IA RL+AD
Sbjct: 140 GQHAGKAVAVKVLRPNMLPVIDSD-------LALLRDIAVWAE--RLWADGKRLKPREVV 190
Query: 227 -ELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTD 285
E K L ELD EAAN S+ + + + + VP+++ VL ME MVG P
Sbjct: 191 AEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVG-VPIS 249
Query: 286 LISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRY 345
+ + VD + L +GVE Q+ G HAD HPGN++
Sbjct: 250 QVETLRAAGVD----------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQV 293
Query: 346 TSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNT 401
+ G+ LDFG++ + + + + + D+ + E V P T
Sbjct: 294 SLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPTTRV 353
Query: 402 LRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGL 461
+ + A+ E F + D+ +VL +++S + +++ + P L+ +++ ++EGL
Sbjct: 354 EELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGL 412
Query: 462 AIAGDPHFKTFEAAYPFV 479
+ DP ++ A P++
Sbjct: 413 GRSLDPELDLWKTAKPYL 430
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 201/405 (49%), Gaps = 32/405 (7%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
++ + G L+ + +LGP FIK GQ LSTR D++ +DI+ L L D++PPF A+ +
Sbjct: 52 TELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVAL 111
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IEE+LG+ V FS EP+A+AS QV+ G V VKV RP L+ V+ +D+
Sbjct: 112 IEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDL--- 168
Query: 205 RIGLGLLQKIAKRKS--DLRLYADEL----GKGLVGELDYTLEAANASEFQESHSPFPFI 258
L L+ K A+R S RL+ E+ K + ELD EAANAS+ + + +
Sbjct: 169 -AWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELM 227
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ L R +VL ME + G TD+++L+ Q+ D K L
Sbjct: 228 YVPQVYWDLCRPKVLVMERIYGVPVTDMVTLAD-------------QRTDMKL----LAE 270
Query: 319 KGVEATLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASI 374
+GVE Q+ HAD HPGN+ ++ S Q +D G++ + + Q + ++
Sbjct: 271 RGVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNL 330
Query: 375 VHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIW 434
+ D++ + + V T + + E F+ + D+ F +VL +++
Sbjct: 331 IAFFKRDYRRVAQLHIDSGWVPAHTKVNEFEAAIR-TVCEPIFEKPLKDISFGQVLMRLF 389
Query: 435 SIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
A +++ + P L+ ++L ++EGL P + A PF+
Sbjct: 390 QTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPFL 434
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 197/400 (49%), Gaps = 32/400 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ +DI+ L L D++PPF A+ +IEE+L
Sbjct: 57 GARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQL 116
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+ V FS EP+A+AS QV+ G V VKV RP L+ V+ +D+ L
Sbjct: 117 GAKVGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKVVRPGLKPVIAQDL----AWLF 172
Query: 210 LLQKIAKRKS--DLRLYADEL----GKGLVGELDYTLEAANASEFQESHSPFPFIHVPKV 263
L+ K A+R S RL+ E+ K + ELD EAANAS+ + + ++VP+V
Sbjct: 173 LIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQV 232
Query: 264 FRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEA 323
+ L R +VL ME + G TD+ +L+ Q+ D K L +GVE
Sbjct: 233 YWDLCRPKVLVMERIYGVPVTDMATLAD-------------QRTDMKM----LAERGVEV 275
Query: 324 TLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASIVHIVN 379
Q+ HAD HPGN+ ++ S Q +D G++ + + Q + +++
Sbjct: 276 FFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFK 335
Query: 380 GDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALK 439
D++ + + V T + + E F+ + D+ F +VL +++ A +
Sbjct: 336 RDYRRVAQLHIDSGWVPAQTKVNEFEAAIR-TVCEPIFEKPLKDISFGQVLMRLFQTARR 394
Query: 440 YHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
++ + P L+ ++L ++EGL P + A PF+
Sbjct: 395 FNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPFL 434
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 128/438 (29%), Positives = 208/438 (47%), Gaps = 52/438 (11%)
Query: 62 RIRTSRIRKFLR-SDLEKDFDGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGS 120
R+ R+R LR + + + FD G+ L+ + +LGP F+K GQ LSTR D++
Sbjct: 25 RVNDRRVRLLLRITTIGRKFDQPP-----GVRLRLALESLGPIFVKFGQVLSTRRDLLRP 79
Query: 121 DISKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGS--- 177
DI+ L++L DQ+PPF ++A+ IIE+ LG+PV++ F PVA+AS QV+ +
Sbjct: 80 DIATELAKLQDQVPPFDSAVAIAIIEKSLGAPVDTIFDDFERVPVASASIAQVHFATLKI 139
Query: 178 -TLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYAD---------- 226
G VAVKV RPN+ V+ D L LL+ IA RL+AD
Sbjct: 140 GQHAGKQVAVKVLRPNMLPVIDSD-------LALLRDIAVWAE--RLWADGKRLKPREVV 190
Query: 227 -ELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTD 285
E K L ELD EAAN S+ + + + + VP+++ VL ME MVG P
Sbjct: 191 AEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWEYCTANVLVMERMVG-VPIS 249
Query: 286 LISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRY 345
+ + VD + L +GVE Q+ G HAD HPGN++
Sbjct: 250 QVDTLRVAGVD----------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQV 293
Query: 346 TSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNT 401
+ G+ LDFG++ + + + + + D+ + E V P T
Sbjct: 294 SLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWV-PATTR 352
Query: 402 LRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGL 461
+ A+ E F + D+ +VL +++S + +++ + P L+ +++ ++EGL
Sbjct: 353 VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGL 412
Query: 462 AIAGDPHFKTFEAAYPFV 479
+ DP ++ A P++
Sbjct: 413 GRSLDPELDLWKTAKPYL 430
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 199/417 (47%), Gaps = 30/417 (7%)
Query: 99 NLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFS 158
+LGP F+K GQ LSTR D++ + + L+ L D++PPF IA +++E LG VE F
Sbjct: 58 SLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFV 117
Query: 159 FISEEPVAAASFGQVYRGSTLD-----GSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQK 213
+PVA+AS QV++ G VAVKV RP + V+ +D+ ++R G ++K
Sbjct: 118 DFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEK 177
Query: 214 IAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKR 271
+ L R E K L ELD EAANAS+ + + + VP+VF S +
Sbjct: 178 LFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSRE 237
Query: 272 VLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLET 331
VLT+EWM G P I + VD L L GVE Q+
Sbjct: 238 VLTLEWMHG-IPVGQIERLREAGVD----------------LQKLSRFGVEIFFTQVFRH 280
Query: 332 GILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTE 391
G HAD HPGN+ + G+ LDFG++ + + + + + N D+ + + E
Sbjct: 281 GFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIE 340
Query: 392 MDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLV 451
V T + + + E F+ + ++ F VL +++ + +++ + P L+
Sbjct: 341 SGWVPRDTRAEELEAAVR-TVCEPIFEKPLSEISFGMVLLRLFETSRRFNVEIQPQLVLL 399
Query: 452 LRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVATRKILHSVVFNKKKEFQW 508
++L ++EGL DP ++ A PF + K + E + R +L ++ K + QW
Sbjct: 400 QKTLLNIEGLGRQLDPELDLWDTAKPF-LTKWMNEQ-IGWRGLLRTL---KHEAPQW 451
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 194/400 (48%), Gaps = 32/400 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L L D++PPF +MK+IEE+L
Sbjct: 56 GARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSMKLIEEQL 115
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G + FS +P+A+AS QV+ G V VKV RP L+ ++ +D+ L I
Sbjct: 116 GKKISEVFSRFDVDPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIGQDLAWLFI--- 172
Query: 210 LLQKIAKR-KSDLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKV 263
L + A+R +D RL + K + ELD EAANAS+ + + P ++VP+V
Sbjct: 173 -LARAAERFSADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQV 231
Query: 264 FRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEA 323
+ R +VL ME + G TDL +L+ Q+ D K L +GVE
Sbjct: 232 YWDWCRPKVLVMERIYGVQVTDLATLAD-------------QRTDMKM----LAERGVEI 274
Query: 324 TLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASIVHIVN 379
Q+ HAD HPGN+ ++ S Q +D G++ + + Q + ++
Sbjct: 275 FFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFK 334
Query: 380 GDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALK 439
D++ + + V P L + E F+ + D+ F +VL +++ A +
Sbjct: 335 RDYRRVAQLHIDSGWV-PAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARR 393
Query: 440 YHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
++ + P L+ ++L ++EGL P + A PF+
Sbjct: 394 FNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFL 433
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 193/397 (48%), Gaps = 26/397 (6%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + LGP F+K GQ LSTR D++ D++++L +L D++PPFP A IIE+ L
Sbjct: 52 GDRLRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSL 111
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+PV F+ S +P+A+AS QV+ + +G V VKV RP + V+ +D+ ++ + G
Sbjct: 112 GAPVSELFAEFSPDPMASASVAQVHAATLPNGQKVVVKVLRPGIEKVIRQDLGLMYLMAG 171
Query: 210 LLQKI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
LL+K KR + + AD + ELD EAANAS+ + + P I++P +
Sbjct: 172 LLEKYWSEGKRLHPVEVVAD-YDSTIHDELDLQREAANASQLRRNFENSPLIYIPFIDWD 230
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
+RK VL ME + G D+ +L +K R+ L KGVE
Sbjct: 231 YTRKSVLVMERIHGIPIADVPAL---------------EKAGVNMRV--LAEKGVEIFFT 273
Query: 327 QLLETGILHADPHPGNLRYTSSGQIG----FLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ HAD HPGN+ S +DFG++ + Q + +++ D+
Sbjct: 274 QVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDY 333
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHF 442
+ + + V P T + + E F+ + D+ F L +++ A +++
Sbjct: 334 RQVAQLHIQSGWVPPETRVNEFEAAIR-TVCEPIFERPLKDISFGHFLLRLFQTARRFNM 392
Query: 443 RMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
+ P L+ ++L ++EGL P + A PF+
Sbjct: 393 EVQPQLVLLQKTLLNVEGLGRQLYPDLDLWSTAQPFL 429
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 197/400 (49%), Gaps = 32/400 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ +LGP F+K GQ LSTRPD++ +DI L+ L D + PF + +I+E L
Sbjct: 49 GERLRRACEDLGPIFVKFGQLLSTRPDLVPADIVLELNHLQDNVTPFSKGEFQRIVESSL 108
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDI-YILRIGL 208
G+ V F+ + EP+A+AS QV+ DG V +KV RP + V+ +DI +LR+
Sbjct: 109 GASVAEVFASFNIEPLASASVAQVHTAVLKDGREVVIKVIRPGIDKVIAQDIALLLRVAR 168
Query: 209 GLLQKI--AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+ KR + + D + ELD EAAN S+ + + P ++VP+V+
Sbjct: 169 WVENNTLDGKRLHPVEIVED-YRTTIFDELDLQREAANGSQLRRNFLNSPLLYVPEVYWE 227
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
+R VL ME + G TDL +L+ Q+ D K L +GVE
Sbjct: 228 YTRTNVLVMERIYGIPVTDLAALNA-------------QQTDMK----KLAERGVEIFFT 270
Query: 327 QLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ E HAD HPGN+ + S+ Q +D ++ + R Q+ + +++ + D+
Sbjct: 271 QVFEHNFFHADMHPGNIFVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAMFRRDY 330
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKFSRVLGKIWSIALK 439
+ + E V + +RV +LE A + E F+ + ++ F++VL ++ A +
Sbjct: 331 RQVAELHVESGWV---PSHVRVE-ELEAAVRTVCEPIFEKPLKEISFAQVLLNLFRTARR 386
Query: 440 YHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
+ + P L+ ++L ++EGL P + A+PF+
Sbjct: 387 FEMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWATAHPFL 426
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/471 (27%), Positives = 216/471 (45%), Gaps = 53/471 (11%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+E + LGP F+K GQ LSTR D++ DI+ L+ L D++PPFP ++A+ IE
Sbjct: 50 GQRLREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAF 109
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGS--TLDGSI--VAVKVQRPNLRHVVVRDIYILR 205
PV F E P+A+AS QV+ + T +G + VAVKV RP++R V+ +D+ ++
Sbjct: 110 RRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMA 169
Query: 206 IGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKV 263
+ G ++K++ L R E K L ELD EAANA++ + + + + +P++
Sbjct: 170 MMAGWVEKLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEM 229
Query: 264 FRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEA 323
F V+ ME M G P + + VD + L GV
Sbjct: 230 FWDFCHPEVIVMERMNG-VPIAQLDRLRAAGVD----------------IPKLARDGVTI 272
Query: 324 TLVQLLETGILHADPHPGNLRYT----SSGQIGFLDFGLLCRMERKHQFAMLASIVHIVN 379
Q+ G HAD HPGN++ + + G+ LDFG++ + + + + V
Sbjct: 273 FFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFR 332
Query: 380 GDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSRVLGKIWSI 436
D++ + E V GT +LE A+ E F + ++ VL +++
Sbjct: 333 RDYKRVAELHLESGWVPEGTR----IDELEGAIRTVCEPYFDRPLKEISLGMVLMRLFQT 388
Query: 437 ALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPF-------------VIQKL 483
+ ++H + P L+ ++L ++EGL DP + A PF + Q+L
Sbjct: 389 SRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWHTAKPFLEKWMVDQIGPKKLFQQL 448
Query: 484 LTENSVATR------KILHSVVFNKKKEFQWQRLSLFLRVGATRKGLQQVI 528
E + ++LH + N+ + + + L L T + LQ +I
Sbjct: 449 KAEAPRYAKLLPELPRLLHDFLENRPADHRRELLELLAAQKRTNRLLQTII 499
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 198/405 (48%), Gaps = 32/405 (7%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
++ + G L+ + +LGP FIK GQ LSTR D++ DI+ L L D++PPF A+ +
Sbjct: 52 TELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVAL 111
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IEE+LG+ V FS EP+A+AS QV+ G V VKV RP L+ V+ +D+
Sbjct: 112 IEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDL--- 168
Query: 205 RIGLGLLQKIAKRKS--DLRLYADEL----GKGLVGELDYTLEAANASEFQESHSPFPFI 258
L L+ K A+R S RL+ E+ K + ELD EAANAS+ + + +
Sbjct: 169 -AWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEDSELM 227
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ L R +VL ME + G TD+ +L+ Q+ D K L
Sbjct: 228 YVPQVYWDLCRPKVLVMERIYGVPVTDMATLAD-------------QRTDMKL----LAE 270
Query: 319 KGVEATLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASI 374
+GVE Q+ HAD HPGN+ ++ S Q +D G++ + + Q + ++
Sbjct: 271 RGVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNL 330
Query: 375 VHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIW 434
D++ + + V T + + E F+ + D+ F +VL +++
Sbjct: 331 FAFFKRDYRRVAQLHIDSGWVPANTKVNEFEAAIR-TVCEPIFEKPLKDISFGQVLMRLF 389
Query: 435 SIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
A +++ + P L+ ++L ++EGL P + A P++
Sbjct: 390 QTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPYL 434
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 199/405 (49%), Gaps = 32/405 (7%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
S+ + G L+ + +LGP FIK GQ LSTR D++ +DI+ L L D++PPF A+ +
Sbjct: 51 SELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPKQAVAL 110
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IE +LG+ V FS EP+A+AS QV+ G V VKV RP L+ V+ +D+
Sbjct: 111 IESQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDL--- 167
Query: 205 RIGLGLLQKIAKRKS--DLRLYADEL----GKGLVGELDYTLEAANASEFQESHSPFPFI 258
L L+ K A+R S RL+ E+ K + ELD EAANAS+ + + +
Sbjct: 168 -AWLFLIAKGAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELM 226
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ L R +VL ME + G TD+ +L+ Q+ D K L
Sbjct: 227 YVPQVYWDLCRPKVLVMERIYGVPVTDMATLAD-------------QRTDMKL----LAE 269
Query: 319 KGVEATLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASI 374
+GVE Q+ HAD HPGN+ ++ S Q +D G++ + + Q + ++
Sbjct: 270 RGVEVFFTQVFRHSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNL 329
Query: 375 VHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIW 434
+ D++ + + V T + + E F+ + D+ F +VL +++
Sbjct: 330 IAFFKRDYRRVAELHIDSGWVPAHTKVNEFEAAIR-TVCEPIFEKPLKDISFGQVLMRLF 388
Query: 435 SIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
A +++ + P L+ ++L ++EGL P + A PF+
Sbjct: 389 QTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPFL 433
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 195/414 (47%), Gaps = 33/414 (7%)
Query: 82 GNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIA 141
I + + G L+ + LGP F+K GQ LSTR D++ DI L L D++ PF A
Sbjct: 44 AEIVEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTA 103
Query: 142 MKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDI 201
IIE LG VES F+ P+A+AS QV+ + DG V VKV RP++ H + DI
Sbjct: 104 RIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDGREVVVKVLRPDIEHQISDDI 163
Query: 202 YILRIGLGLLQKIAKRKSDLR--LYADELGKGLVGELDYTLEAANASEFQESHSPFPFIH 259
+L+ L++ +R E+ L ELD E ANAS + I+
Sbjct: 164 ALLKSLATLVEHTHPNADKIRPCEIVAEIETTLAAELDLQREGANASVLRRFWEASDDIY 223
Query: 260 VPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNK 319
VP+V + ++VLT+E M G P+D I+L S +D + L +K
Sbjct: 224 VPEVIWSHTAEQVLTLERMYG-IPSDDIALLDASGIDRKA----------------LSSK 266
Query: 320 GVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLDFGLLCRMERKHQFAMLAS 373
G+ Q+ HAD H GN+ S+ + LDFG++ ++ +K Q+ + +
Sbjct: 267 GIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAEN 326
Query: 374 IVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKFSRVL 430
+ I + D++ + E + P +LE A + E F + + + VL
Sbjct: 327 FMAIFHKDYRRIAELHVEAGWIPPHVR----IEELEAAARSVCEPYFTRPLSQISLAEVL 382
Query: 431 GKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLL 484
K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L
Sbjct: 383 MKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP-VLERIL 435
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 200/405 (49%), Gaps = 32/405 (7%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
S+ + G+ + + +LGP FIK GQ LSTR D++ DI+ L L D++PPF + +A+K+
Sbjct: 51 SELSRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQLAIKL 110
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IEE+LG+ + FS E+P+A+AS QV+ G V VKV RP L+ ++ +D+ L
Sbjct: 111 IEEQLGARICDVFSRFDEKPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWL 170
Query: 205 RIGLGLLQKIAKRKS-DLRLYAD-----ELGKGLVGELDYTLEAANASEFQESHSPFPFI 258
I L ++A+R S D RL + K + ELD EAANAS+ + + +
Sbjct: 171 FI----LARMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANASQLRRNFEGSDLL 226
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ R +VL ME + G TD+ L+ Q+ D K L
Sbjct: 227 YVPQVYWDWCRPKVLVMERIYGLQVTDMAGLAD-------------QRTDMKL----LAE 269
Query: 319 KGVEATLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASI 374
+GVE Q+ HAD HPGN+ ++ + + +D G++ + + Q + ++
Sbjct: 270 RGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNL 329
Query: 375 VHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIW 434
D++ + + V P L + E F+ + D+ F +VL +++
Sbjct: 330 FAFFKRDYRRVAQLHIDSGWV-PAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLF 388
Query: 435 SIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
A +++ + P L+ ++L ++EGL P + A P++
Sbjct: 389 QTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPYL 433
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 194/414 (46%), Gaps = 33/414 (7%)
Query: 82 GNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIA 141
I + + G L+ + LGP F+K GQ LSTR D++ DI L L D++ PF A
Sbjct: 44 AEIVEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTA 103
Query: 142 MKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDI 201
IIE LG VES F+ P+A+AS QV+ + D V VKV RP++ H + DI
Sbjct: 104 RSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISDDI 163
Query: 202 YILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIH 259
+L+ L++ + R E+ L ELD E ANAS + I+
Sbjct: 164 ALLKSLATLVEHTHPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWEASDDIY 223
Query: 260 VPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNK 319
VP+V + +RVLT+E M G P+D I+L S +D + L +K
Sbjct: 224 VPEVIWSHTAERVLTLERMYG-IPSDDIALLDASGIDRKA----------------LSSK 266
Query: 320 GVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLDFGLLCRMERKHQFAMLAS 373
G+ Q+ HAD H GN+ S+ + LDFG++ ++ +K Q+ + +
Sbjct: 267 GIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAEN 326
Query: 374 IVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKFSRVL 430
+ I + D++ + E + P +LE A + E F + + + V+
Sbjct: 327 FMAIFHKDYRRIAELHVEAGWIPPHVR----IEELEAAARSVCEPYFTRPLSQISLAEVM 382
Query: 431 GKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLL 484
K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L
Sbjct: 383 MKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP-VLERIL 435
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 194/414 (46%), Gaps = 33/414 (7%)
Query: 82 GNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIA 141
I + + G L+ + LGP F+K GQ LSTR D++ DI L L D++ PF A
Sbjct: 44 AEIVEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTA 103
Query: 142 MKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDI 201
IIE LG VES F+ P+A+AS QV+ + D V VKV RP++ H + DI
Sbjct: 104 RSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISDDI 163
Query: 202 YILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIH 259
+L+ L++ + R E+ L ELD E ANAS + I+
Sbjct: 164 ALLKSLATLVEHTHPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWEASDDIY 223
Query: 260 VPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNK 319
VP+V + +RVLT+E M G P+D I+L S +D + L +K
Sbjct: 224 VPEVIWSHTAERVLTLERMYG-IPSDDIALLDASGIDRKA----------------LSSK 266
Query: 320 GVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLDFGLLCRMERKHQFAMLAS 373
G+ Q+ HAD H GN+ S+ + LDFG++ ++ +K Q+ + +
Sbjct: 267 GIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAEN 326
Query: 374 IVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKFSRVL 430
+ I + D++ + E + P +LE A + E F + + + V+
Sbjct: 327 FMAIFHKDYRRIAELHVEAGWIPPHVR----IEELEAAARSVCEPYFTRPLSQISLAEVM 382
Query: 431 GKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLL 484
K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L
Sbjct: 383 MKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP-VLERIL 435
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 189/393 (48%), Gaps = 24/393 (6%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP FIK GQ LSTR D++ DI+ L+ L D++PPF ++ +IEE+LG+
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGAR 119
Query: 153 VESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQ 212
V+ F+ EP+A+AS QV+ G V VKV RP L+ V+ +D+ L + L +
Sbjct: 120 VDEAFARFDSEPLASASVAQVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAE 179
Query: 213 KIAKRKSDLRL--YADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRK 270
+ + L L + K + ELD EAANAS+ + + P ++VP+++ R
Sbjct: 180 RASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYWDWCRP 239
Query: 271 RVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLE 330
+VL ME + G TDL +L G+ L L +GVE Q+
Sbjct: 240 KVLVMERIYGVPVTDLAALVD----QGTDLKL-------------LAERGVEIFFTQVFR 282
Query: 331 TGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLV 386
HAD HPGN+ R Q +D G++ + + Q + +++ D++ +
Sbjct: 283 DSFFHADMHPGNIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVA 342
Query: 387 HSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPP 446
+ V T + + E F+ + D+ F ++L +++ A +++ + P
Sbjct: 343 QLHIDSGWVPADTQVNEFEAAIR-TVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQP 401
Query: 447 YYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
L+ ++L ++EGL P + A PF+
Sbjct: 402 QLVLLQKTLLNIEGLGRQLYPELDLWTTAKPFL 434
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 29/405 (7%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHF 442
+ E V P T + + A+ E F + D+ +VL +++S + +++
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNV 393
Query: 443 RMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
+ P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 394 EIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 29/405 (7%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHF 442
+ E V P T + + A+ E F + D+ +VL +++S + +++
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNV 393
Query: 443 RMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
+ P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 394 EIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 29/405 (7%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHF 442
+ E V P T + + A+ E F + D+ +VL +++S + +++
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNV 393
Query: 443 RMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
+ P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 394 EIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 29/405 (7%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHF 442
+ E V P T + + A+ E F + D+ +VL +++S + +++
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNV 393
Query: 443 RMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
+ P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 394 EIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 29/405 (7%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHF 442
+ E V P T + + A+ E F + D+ +VL +++S + +++
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNV 393
Query: 443 RMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
+ P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 394 EIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 29/405 (7%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHF 442
+ E V P T + + A+ E F + D+ +VL +++S + +++
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNV 393
Query: 443 RMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
+ P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 394 EIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 29/405 (7%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHF 442
+ E V P T + + A+ E F + D+ +VL +++S + +++
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNV 393
Query: 443 RMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
+ P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 394 EIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 29/405 (7%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHF 442
+ E V P T + + A+ E F + D+ +VL +++S + +++
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLMRLFSTSRRFNV 393
Query: 443 RMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
+ P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 394 EIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 190/399 (47%), Gaps = 30/399 (7%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L L D++PPF ++ +IE +L
Sbjct: 56 GARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQL 115
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G + FS EP+A+AS QV+ G V VKV RP L+ ++ +D+ L I
Sbjct: 116 GKKISDVFSRFDIEPLASASVAQVHAAKLKTGEEVVVKVIRPGLKPIIAQDLAWLFI--- 172
Query: 210 LLQKIAKRKSDLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVF 264
L + K +D RL + K + ELD EAANAS+ + + P ++VP+V+
Sbjct: 173 LARAAEKLSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVY 232
Query: 265 RYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEAT 324
R +VL ME + G TDL +L+ Q+ D K L +GVE
Sbjct: 233 WDWCRPKVLVMERIYGIQVTDLATLAD-------------QRTDMKM----LAERGVEIF 275
Query: 325 LVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASIVHIVNG 380
Q+ HAD HPGN+ ++ S Q +D G++ + + Q + ++
Sbjct: 276 FTQVFRDSFFHADMHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKR 335
Query: 381 DWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKY 440
D++ + + V P L + E F+ + D+ F +VL +++ A ++
Sbjct: 336 DYRRVAQLHIDSGWV-PAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRF 394
Query: 441 HFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
+ + P L+ ++L ++EGL P + A PF+
Sbjct: 395 NMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFL 433
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 199/405 (49%), Gaps = 32/405 (7%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
S+ + G+ + + +LGP FIK GQ LSTR D++ DI+ L L D++PPF + +A+K+
Sbjct: 51 SELSRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAIKL 110
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IEE+LG+ + FS E P+A+AS QV+ G V VKV RP L+ ++ +D+ L
Sbjct: 111 IEEQLGARICDVFSRFDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWL 170
Query: 205 RIGLGLLQKIAKRKS-DLRLYAD-----ELGKGLVGELDYTLEAANASEFQESHSPFPFI 258
I L ++A+R S D RL + K + ELD EAAN+S+ + + +
Sbjct: 171 FI----LARMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLL 226
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ R +VL ME + G TD+ L+ Q+ D K L
Sbjct: 227 YVPQVYWDWCRPKVLVMERIYGLQVTDMAGLAD-------------QRTDMKM----LAE 269
Query: 319 KGVEATLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASI 374
+GVE Q+ HAD HPGN+ ++ + + +D G++ + + Q + ++
Sbjct: 270 RGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNL 329
Query: 375 VHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIW 434
D++ + + V P L + E F+ + D+ F +VL +++
Sbjct: 330 FAFFKRDYRRVAQLHIDSGWV-PAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLF 388
Query: 435 SIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
A +++ + P L+ ++L ++EGL P + A P++
Sbjct: 389 QTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPYL 433
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 198/405 (48%), Gaps = 32/405 (7%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
S+ + G+ + + +LGP FIK GQ LSTR D++ DI+ L L D++PPF + +A+ +
Sbjct: 51 SELSRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAINL 110
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IEE+LG+ + FS E P+A+AS QV+ G V VKV RP L+ V+ +D+ L
Sbjct: 111 IEEQLGARICDVFSRFDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPVIGQDLAWL 170
Query: 205 RIGLGLLQKIAKRKS-DLRLYAD-----ELGKGLVGELDYTLEAANASEFQESHSPFPFI 258
I L ++A+R S D RL + K + ELD EAAN+S+ + + +
Sbjct: 171 FI----LARMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLL 226
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ R +VL ME + G TD+ L+ Q+ D K L
Sbjct: 227 YVPQVYWDWCRPKVLVMERIYGLQVTDMAGLAD-------------QRTDMKL----LAE 269
Query: 319 KGVEATLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASI 374
+GVE Q+ HAD HPGN+ ++ S + +D G++ + + Q + ++
Sbjct: 270 RGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWSPKYIAIDCGIVGSLTPEDQDYLARNL 329
Query: 375 VHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIW 434
D++ + + V P L + E F+ + D+ F +VL +++
Sbjct: 330 FAFFKRDYRRVAQLHIDSGWV-PAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLF 388
Query: 435 SIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
A +++ + P L+ ++L ++EGL P + A P++
Sbjct: 389 QTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPYL 433
>sp|Q0I208|UBIB_HAES1 Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus somnus
(strain 129Pt) GN=ubiB PE=3 SV=1
Length = 544
Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 197/412 (47%), Gaps = 35/412 (8%)
Query: 89 FGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEE 148
FG+ L+ + LGP +IK+GQ LSTR D+ ++I+ L+ L D + F IA + IE+
Sbjct: 53 FGLCLRLALQELGPVWIKLGQMLSTRRDLFPAEIADELALLQDNVEAFSGKIARQQIEQA 112
Query: 149 LGSPVESFFSFISEEPVAAASFGQVYRGSTLDGS----IVAVKVQRPNLRHVVVRDIYIL 204
LGS +E++F+ E +A+AS QV+ G V +KV RPN++ + D+ +
Sbjct: 113 LGSSLENWFTDFDENALASASIAQVHTAKLKLGEEQEKEVVIKVLRPNIQPQIEADLSWM 172
Query: 205 RIGLGLLQKIAKRKSDLRLYA--DELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPK 262
GLL K+ + LR E K L ELD +E ANA + +E+ P +++PK
Sbjct: 173 YKLAGLLPKLFREGYRLRAVEVIQEYEKTLRDELDLRVEMANAIKLRENFLDSPMLYIPK 232
Query: 263 VFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVE 322
++ K V+ ME + G +D+ +L +G+ L L +GV+
Sbjct: 233 MYEAFCHKNVIVMERIYGIPVSDVETLQR----NGTDMKL-------------LAERGVQ 275
Query: 323 ATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIV 378
Q+ HAD HPGN+ Y + Q +D G++ ++ + + S V
Sbjct: 276 VFFTQVFRDSFFHADMHPGNIFVNPHYPENPQYIGIDCGIVGKLNESDKRYLAESFVAFF 335
Query: 379 NGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE---FKDGIPDVKFSRVLGKIWS 435
N D++ + + TN D E A EV F + ++ F++VL +++
Sbjct: 336 NRDYRRVAQMHVDAGWTPQDTN----IDDFEQAFREVCEPIFAKPLSEISFAQVLLNLFN 391
Query: 436 IALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
+A +++ ++ P L+ ++L +EGL P ++ A PF +Q L E
Sbjct: 392 VAREFNMQVQPQLVLLQKTLLYIEGLGRQLYPQLDLWDTAKPF-LQNWLNEQ 442
>sp|Q9CKD4|UBIB_PASMU Probable ubiquinone biosynthesis protein UbiB OS=Pasteurella
multocida (strain Pm70) GN=ubiB PE=3 SV=1
Length = 527
Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 197/418 (47%), Gaps = 41/418 (9%)
Query: 89 FGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEE 148
FG+ L+ + LGP +IK+GQ LSTR D+ DI+ L+ L DQ+ PF IA IE+
Sbjct: 53 FGLRLRLALQELGPVWIKLGQMLSTRRDLFPPDIADELALLQDQVDPFDGKIARAQIEKA 112
Query: 149 LGSPVESFFSFISEEPVAAASFGQVYRG----------STLDGSIVAVKVQRPNLRHVVV 198
LG+P+E++F +E +A+AS QV+ + L G V +KV RPN++ ++
Sbjct: 113 LGAPLETWFDEFNETALASASIAQVHTAKFKQNAPHLENRLAGKEVVLKVLRPNIQQMIN 172
Query: 199 RDIYILRIGLGLLQKIAKRKSDLR--LYADELGKGLVGELDYTLEAANASEFQESHSPFP 256
D+ ++ + +I LR E K L ELD E ANA + + + P
Sbjct: 173 ADLSLMYKVASWIPRIKAEGRRLRPVEVVREYEKNLRDELDLRREMANAIQLRANFENSP 232
Query: 257 FIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDL 316
+++P++++ + V+ ME + G I +S + + T++ KL L
Sbjct: 233 MLYIPEMYKQFCHQTVIVMERIYG------IPVSNIEELHANGTNM---KL--------L 275
Query: 317 VNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLA 372
+GV+ Q+ HAD HPGN+ + Q +D G++ R+ + +
Sbjct: 276 AERGVQVFFTQVFRDSFFHADMHPGNIFVNRAHPDDPQYIGIDCGIVGRLNDHDKRYLAE 335
Query: 373 SIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE---FKDGIPDVKFSRV 429
S V N D++ + EM V T D E A EV F + ++ F V
Sbjct: 336 SFVAFFNRDYR----RVAEMHVASGWTPKDTNIDDFEQAFREVCEPIFAKPLSEISFGHV 391
Query: 430 LGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 487
L ++++A +Y+ + P L+ ++L +EGL P ++ A PF +QK L E
Sbjct: 392 LLNLFNVAREYNMEVQPQLVLLQKTLLYIEGLGRQLYPQLDLWDTAKPF-LQKWLDEQ 448
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 196/414 (47%), Gaps = 33/414 (7%)
Query: 82 GNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIA 141
I + + G L+ + LGP F+K GQ LSTR D++ DI L L D++ PF A
Sbjct: 44 AEIVEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTA 103
Query: 142 MKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDI 201
IIE LG VES F+ P+A+AS QV+ + D V VKV RP++ H + DI
Sbjct: 104 RIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRREVVVKVLRPDIEHQISDDI 163
Query: 202 YILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIH 259
+L+ L++ + R E+ L ELD E ANAS + I+
Sbjct: 164 ALLKSLATLVEHTHPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWEASDDIY 223
Query: 260 VPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNK 319
VP+V + +RVLT+E M G P+D I+L S +D + L +K
Sbjct: 224 VPEVIWSHTAERVLTLERMYG-IPSDDIALLDASGIDRKA----------------LSSK 266
Query: 320 GVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLDFGLLCRMERKHQFAMLAS 373
G+ Q+ HAD H GN+ S+ + LDFG++ ++ +K Q+ + +
Sbjct: 267 GIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAEN 326
Query: 374 IVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKFSRVL 430
+ I + D++ + E + +R+ +LE A + E F + + + VL
Sbjct: 327 FMAIFHKDYRRIAELHVEAGWI---PQHVRIE-ELEAAARSVCEPYFTRPLSQISLAEVL 382
Query: 431 GKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLL 484
K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L
Sbjct: 383 MKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP-VLERIL 435
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 110/388 (28%), Positives = 191/388 (49%), Gaps = 27/388 (6%)
Query: 100 LGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSF 159
LGP FIK GQ LSTR D++ DI++ L+ L D++PPF A IEE LG PVE+ F
Sbjct: 64 LGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQAARLKIEESLGCPVETLFDD 123
Query: 160 ISEEPVAAASFGQVYRGS-TLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRK 218
E P+A+AS QV+ G +G + +KV RP++ V+ D+ +++ L+ + +
Sbjct: 124 FDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLARLVARFVPQS 183
Query: 219 SDLR--LYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTME 276
+ LR +E K ++ EL+ EAANA + + + + ++VP+VF R+ VL ME
Sbjct: 184 ARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSDALYVPEVFTEHCREHVLVME 243
Query: 277 WMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHA 336
+ G +D+ +L +G++ L L +GVE Q+ HA
Sbjct: 244 RIYGIPVSDIPALEA----NGTNMKL-------------LAERGVEVFFTQVFRDSFFHA 286
Query: 337 DPHPGNLRYTSSGQ-----IGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTE 391
D HPGN+ + IG +D G++ + R+ + + + + N D++ + E
Sbjct: 287 DMHPGNIFVSYEHPDNPLWIG-IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVE 345
Query: 392 MDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLV 451
V P T + L + F+ + ++ F VL +++ A +++ + P L+
Sbjct: 346 SGWVPPDTKVDEFEFAIRTVLEPI-FEKPLSEISFGHVLLNLFNTARRFNMAVQPQLVLL 404
Query: 452 LRSLASLEGLAIAGDPHFKTFEAAYPFV 479
++L +EGL P ++ A P++
Sbjct: 405 QKTLLYVEGLGRQLYPQLDLWQTAKPYL 432
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 185/403 (45%), Gaps = 34/403 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + LGP F+K GQ LSTR D++ D++ L++L D++PPF IA I+E L
Sbjct: 50 GERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSL 109
Query: 150 GSPVESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILR 205
G P+ + F PVA+AS QV+ RG DG VAVKV RP + V+ D+ ++R
Sbjct: 110 GKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMR 169
Query: 206 IGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKV 263
++K+ L R E K L ELD EAANAS+ + + + + VP+V
Sbjct: 170 DVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSELLLVPEV 229
Query: 264 FRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEA 323
F V ME M G +S + G TH L GVE
Sbjct: 230 FWDWCTSEVFVMERMHGVR----VSHADELRAAGVDTH-------------KLARDGVEI 272
Query: 324 TLVQLLETGILHADPHPGNLRYT----SSGQIGFLDFGLLCRMERKHQFAMLASIVHIVN 379
Q+ G HAD HPGN+ + S G+ LDFG++ + + + + +
Sbjct: 273 FFTQVFRDGFFHADMHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQ 332
Query: 380 GDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSRVLGKIWSI 436
D+ H + + V +LE A+ E F + ++ VL +++
Sbjct: 333 RDY----HRVALLHVESGWAPEETRVEELEGAIRACCEPYFDRPLGEISLGLVLMRLFQT 388
Query: 437 ALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
+ +++ + P L+ ++L ++EGL DP ++ A PF+
Sbjct: 389 SRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPDLDLWKTAKPFL 431
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 194/400 (48%), Gaps = 27/400 (6%)
Query: 88 NFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEE 147
N G ++ LGP FIK GQ LSTR D++ DI++ L+ L D++PPF A + IE
Sbjct: 52 NRGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEA 111
Query: 148 ELGSPVESFFSFISEEPVAAASFGQVYRGS-TLDGSIVAVKVQRPNLRHVVVRDIYILRI 206
LG +E+ F E P+A+AS QV+ +G + +KV RP++ V+ D+ +++
Sbjct: 112 SLGCTIETLFDDFDETPLASASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQA 171
Query: 207 GLGLLQKIAKRKSDLR--LYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVF 264
L+ + + LR +E K ++ EL+ EAANA + + + + ++VP+VF
Sbjct: 172 LARLVARFVPQSGRLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSEALYVPEVF 231
Query: 265 RYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEAT 324
R++VL ME + G +D+ +L +G++ L L +GVE
Sbjct: 232 TEHCREQVLVMERIYGIPVSDIAALEA----NGTNMKL-------------LAERGVEVF 274
Query: 325 LVQLLETGILHADPHPGNLRYTSSGQ-----IGFLDFGLLCRMERKHQFAMLASIVHIVN 379
Q+ HAD HPGN+ + IG +D G++ + R+ + + + + N
Sbjct: 275 FTQVFRDSFFHADMHPGNIFVSYEHPENPLWIG-IDCGIVGTLNREDKRYLAENFLAFFN 333
Query: 380 GDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALK 439
D++ + E V P T + L + F+ + ++ F VL +++ A +
Sbjct: 334 RDYRRVAELHVESGWVPPDTKVDEFEFAIRTVLEPI-FEKPLSEISFGHVLLNLFNTARR 392
Query: 440 YHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 479
++ ++ P L+ ++L +EGL P ++ A P++
Sbjct: 393 FNMQVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPYL 432
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,222,400
Number of Sequences: 539616
Number of extensions: 10683682
Number of successful extensions: 28258
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 27329
Number of HSP's gapped (non-prelim): 247
length of query: 718
length of database: 191,569,459
effective HSP length: 125
effective length of query: 593
effective length of database: 124,117,459
effective search space: 73601653187
effective search space used: 73601653187
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)