Query 005027
Match_columns 718
No_of_seqs 363 out of 2266
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 16:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2301 Voltage-gated Ca2+ cha 100.0 7.9E-62 1.7E-66 582.1 32.1 474 138-672 877-1409(1592)
2 KOG2302 T-type voltage-gated C 100.0 9.9E-57 2.1E-61 489.2 34.8 481 139-675 1162-1696(1956)
3 KOG2302 T-type voltage-gated C 100.0 1.5E-56 3.2E-61 487.9 30.7 268 404-675 1110-1400(1956)
4 KOG2301 Voltage-gated Ca2+ cha 100.0 2.2E-54 4.7E-59 518.2 23.8 517 137-672 477-1113(1592)
5 PF00520 Ion_trans: Ion transp 99.9 1.8E-22 3.8E-27 200.0 13.7 198 454-659 1-200 (200)
6 KOG3713 Voltage-gated K+ chann 99.9 6E-21 1.3E-25 202.3 21.5 246 405-675 172-442 (477)
7 PLN03223 Polycystin cation cha 99.8 2E-18 4.3E-23 198.8 23.9 199 452-670 1178-1429(1634)
8 KOG1545 Voltage-gated shaker-l 99.7 3.1E-18 6.6E-23 172.6 7.1 247 404-675 170-458 (507)
9 KOG1545 Voltage-gated shaker-l 99.7 1.3E-17 2.7E-22 168.2 2.6 246 41-294 141-421 (507)
10 PF00520 Ion_trans: Ion transp 99.6 4.4E-16 9.4E-21 154.1 7.8 153 138-290 2-170 (200)
11 KOG3713 Voltage-gated K+ chann 99.6 1.5E-15 3.2E-20 161.6 11.7 154 138-294 245-405 (477)
12 PF08016 PKD_channel: Polycyst 99.5 9.6E-13 2.1E-17 146.4 20.0 188 453-665 214-424 (425)
13 KOG3599 Ca2+-modulated nonsele 99.5 1.2E-12 2.6E-17 151.6 19.4 197 453-672 469-688 (798)
14 KOG4390 Voltage-gated A-type K 99.4 3.5E-15 7.7E-20 151.7 -7.1 236 405-672 165-418 (632)
15 TIGR00870 trp transient-recept 99.2 3.1E-10 6.6E-15 135.5 20.6 216 452-671 391-623 (743)
16 PLN03223 Polycystin cation cha 99.0 7.7E-09 1.7E-13 121.0 19.4 188 135-325 1175-1428(1634)
17 KOG1419 Voltage-gated K+ chann 98.8 3.4E-08 7.4E-13 106.1 13.8 240 408-674 78-333 (654)
18 KOG4390 Voltage-gated A-type K 98.8 2.6E-09 5.6E-14 109.4 3.0 151 138-294 232-384 (632)
19 KOG3609 Receptor-activated Ca2 98.8 1.5E-07 3.3E-12 106.6 15.9 210 459-672 393-620 (822)
20 PLN03192 Voltage-dependent pot 98.3 3.7E-05 8E-10 93.0 19.8 222 419-665 63-305 (823)
21 PF08016 PKD_channel: Polycyst 98.1 1.1E-05 2.4E-10 89.9 10.6 139 137-279 212-380 (425)
22 KOG3599 Ca2+-modulated nonsele 97.8 6.8E-05 1.5E-09 88.0 9.6 135 142-279 475-637 (798)
23 KOG1419 Voltage-gated K+ chann 97.7 0.00015 3.3E-09 78.7 10.4 149 136-294 128-297 (654)
24 KOG3733 Mucolipidin and relate 97.4 0.0056 1.2E-07 64.7 15.8 128 523-670 384-514 (566)
25 KOG0510 Ankyrin repeat protein 97.4 0.0041 8.8E-08 71.0 15.7 172 477-671 589-765 (929)
26 KOG3533 Inositol 1,4,5-trispho 97.4 0.025 5.4E-07 67.1 21.8 147 529-675 2398-2581(2706)
27 KOG3676 Ca2+-permeable cation 97.2 0.041 8.9E-07 63.3 21.7 114 548-670 538-654 (782)
28 KOG3614 Ca2+/Mg2+-permeable ca 97.0 0.015 3.1E-07 70.1 16.2 198 451-670 823-1049(1381)
29 KOG0498 K+-channel ERG and rel 96.9 0.043 9.3E-07 63.9 18.2 130 419-551 79-231 (727)
30 TIGR00870 trp transient-recept 96.8 0.0079 1.7E-07 72.3 12.2 139 141-279 397-572 (743)
31 PLN03192 Voltage-dependent pot 96.6 0.038 8.3E-07 67.1 16.1 152 138-294 97-278 (823)
32 KOG3609 Receptor-activated Ca2 95.4 0.14 3.1E-06 59.3 12.0 130 147-276 398-561 (822)
33 KOG1420 Ca2+-activated K+ chan 94.8 0.029 6.3E-07 61.4 4.3 73 452-540 164-237 (1103)
34 cd05022 S-100A13 S-100A13: S-1 92.2 0.56 1.2E-05 39.9 7.0 67 314-385 9-78 (89)
35 PF13499 EF-hand_7: EF-hand do 91.9 0.42 9.1E-06 37.8 5.6 64 315-379 2-65 (66)
36 PRK10537 voltage-gated potassi 91.7 8.1 0.00017 42.6 17.0 102 519-651 108-210 (393)
37 cd05027 S-100B S-100B: S-100B 90.6 1.2 2.7E-05 37.8 7.4 71 314-385 9-82 (88)
38 COG5126 FRQ1 Ca2+-binding prot 89.3 0.92 2E-05 42.9 6.1 65 311-380 90-154 (160)
39 cd00052 EH Eps15 homology doma 88.5 2.2 4.7E-05 33.5 7.1 62 316-384 2-63 (67)
40 cd00213 S-100 S-100: S-100 dom 88.1 4 8.7E-05 34.3 8.9 73 312-384 7-81 (88)
41 smart00027 EH Eps15 homology d 87.7 4.1 8.9E-05 35.0 8.8 66 313-385 10-75 (96)
42 cd00051 EFh EF-hand, calcium b 87.4 2.3 5E-05 32.0 6.5 59 316-379 3-61 (63)
43 cd05031 S-100A10_like S-100A10 85.3 3.5 7.5E-05 35.3 7.0 71 314-385 9-82 (94)
44 cd05025 S-100A1 S-100A1: S-100 84.8 4.6 9.9E-05 34.4 7.5 70 314-384 10-82 (92)
45 cd05026 S-100Z S-100Z: S-100Z 82.2 6.7 0.00015 33.6 7.5 69 315-384 12-83 (93)
46 PF00036 EF-hand_1: EF hand; 81.3 1.9 4.1E-05 28.3 2.9 27 355-381 1-27 (29)
47 KOG2243 Ca2+ release channel ( 81.1 2.3 4.9E-05 51.3 5.2 138 523-674 4789-4933(5019)
48 KOG0500 Cyclic nucleotide-gate 80.8 30 0.00064 38.5 13.2 66 428-493 7-85 (536)
49 PTZ00183 centrin; Provisional 80.6 6.3 0.00014 36.8 7.5 63 313-380 90-152 (158)
50 KOG0501 K+-channel KCNQ [Inorg 80.2 8.2 0.00018 43.3 8.9 75 418-495 218-307 (971)
51 PF13833 EF-hand_8: EF-hand do 80.1 5.1 0.00011 30.1 5.4 49 328-381 3-52 (54)
52 cd05023 S-100A11 S-100A11: S-1 80.0 9.6 0.00021 32.4 7.6 71 314-385 10-83 (89)
53 KOG0027 Calmodulin and related 77.8 6.4 0.00014 36.9 6.5 64 312-380 84-147 (151)
54 PTZ00184 calmodulin; Provision 77.1 8.8 0.00019 35.2 7.3 63 313-380 84-146 (149)
55 KOG0027 Calmodulin and related 76.7 7.9 0.00017 36.3 6.8 66 313-383 8-73 (151)
56 PF14788 EF-hand_10: EF hand; 75.9 8.5 0.00018 28.9 5.2 44 335-383 7-50 (51)
57 KOG0028 Ca2+-binding protein ( 75.3 10 0.00022 35.7 6.7 63 313-380 106-168 (172)
58 KOG0036 Predicted mitochondria 74.9 8.7 0.00019 41.5 7.0 73 295-380 72-144 (463)
59 KOG0499 Cyclic nucleotide-gate 74.0 61 0.0013 36.9 13.3 46 449-494 260-319 (815)
60 KOG0044 Ca2+ sensor (EF-Hand s 72.7 12 0.00026 36.7 7.0 68 314-381 101-174 (193)
61 PTZ00184 calmodulin; Provision 72.5 16 0.00035 33.4 7.8 65 313-382 11-75 (149)
62 cd05029 S-100A6 S-100A6: S-100 71.1 21 0.00046 30.2 7.4 68 315-384 12-81 (88)
63 PF06512 Na_trans_assoc: Sodiu 69.4 1 2.2E-05 46.0 -1.3 24 405-428 216-239 (239)
64 COG5126 FRQ1 Ca2+-binding prot 69.4 24 0.00051 33.6 7.9 66 313-384 20-85 (160)
65 PRK10537 voltage-gated potassi 68.8 19 0.00042 39.6 8.4 89 197-294 108-196 (393)
66 KOG0498 K+-channel ERG and rel 68.1 10 0.00022 44.7 6.3 39 138-177 122-175 (727)
67 PTZ00183 centrin; Provisional 67.6 26 0.00056 32.5 8.1 63 314-381 18-80 (158)
68 KOG0377 Protein serine/threoni 66.3 28 0.00061 37.9 8.5 75 309-384 543-617 (631)
69 PF13202 EF-hand_5: EF hand; P 65.1 7.9 0.00017 24.3 2.6 23 357-379 2-24 (25)
70 KOG0500 Cyclic nucleotide-gate 63.5 21 0.00045 39.6 7.1 106 136-254 32-150 (536)
71 cd00252 SPARC_EC SPARC_EC; ext 62.8 32 0.0007 30.8 7.2 62 310-380 45-106 (116)
72 PF14658 EF-hand_9: EF-hand do 62.2 30 0.00065 27.6 6.0 59 318-380 3-62 (66)
73 PF13405 EF-hand_6: EF-hand do 60.8 11 0.00023 24.8 2.9 26 356-381 2-27 (31)
74 KOG1420 Ca2+-activated K+ chan 60.6 2.3 4.9E-05 47.2 -0.7 133 138-286 167-309 (1103)
75 KOG3614 Ca2+/Mg2+-permeable ca 57.7 39 0.00084 42.1 8.6 103 143-246 832-945 (1381)
76 KOG3533 Inositol 1,4,5-trispho 51.5 1E+02 0.0022 38.6 10.3 48 209-256 2400-2447(2706)
77 PF01007 IRK: Inward rectifier 49.5 1.4E+02 0.003 32.3 10.5 117 539-666 22-142 (336)
78 cd05030 calgranulins Calgranul 47.7 80 0.0017 26.5 6.9 58 327-385 24-82 (88)
79 PRK12721 secretion system appa 47.6 3.9E+02 0.0084 29.0 13.6 30 636-666 177-206 (349)
80 TIGR01404 FlhB_rel_III type II 46.6 3.3E+02 0.0072 29.4 13.0 23 637-659 177-199 (342)
81 PF12763 EF-hand_4: Cytoskelet 46.5 82 0.0018 27.6 6.9 61 315-383 12-72 (104)
82 KOG0510 Ankyrin repeat protein 45.0 23 0.00049 41.7 3.9 135 156-294 585-723 (929)
83 KOG0034 Ca2+/calmodulin-depend 43.9 55 0.0012 32.0 5.9 66 314-381 105-174 (187)
84 PLN02964 phosphatidylserine de 42.8 58 0.0013 38.2 6.9 63 315-382 181-243 (644)
85 PF10669 Phage_Gp23: Protein g 41.5 80 0.0017 26.8 5.6 31 635-665 13-43 (121)
86 PRK08156 type III secretion sy 41.3 3.6E+02 0.0077 29.4 12.1 24 642-666 178-201 (361)
87 KOG0036 Predicted mitochondria 38.1 1.2E+02 0.0025 33.3 7.6 63 311-377 12-74 (463)
88 cd05024 S-100A10 S-100A10: A s 37.8 2.2E+02 0.0048 24.3 7.9 58 327-385 21-79 (91)
89 KOG0499 Cyclic nucleotide-gate 36.1 4.1E+02 0.0089 30.7 11.6 135 136-284 264-423 (815)
90 KOG0031 Myosin regulatory ligh 33.5 1.7E+02 0.0036 27.6 6.9 64 312-380 100-163 (171)
91 KOG0037 Ca2+-binding protein, 32.2 1.4E+02 0.003 29.8 6.6 21 418-438 177-197 (221)
92 COG1377 FlhB Flagellar biosynt 31.6 7.1E+02 0.015 27.1 15.9 20 560-579 96-115 (363)
93 PF07885 Ion_trans_2: Ion chan 30.9 1.5E+02 0.0032 24.1 5.8 45 239-289 3-47 (79)
94 PF11044 TMEMspv1-c74-12: Plec 30.4 1.1E+02 0.0024 22.1 4.0 26 644-669 7-32 (49)
95 KOG0031 Myosin regulatory ligh 29.4 2.2E+02 0.0047 26.9 6.9 28 315-342 34-61 (171)
96 PRK13109 flhB flagellar biosyn 29.2 5E+02 0.011 28.2 11.0 27 638-665 188-214 (358)
97 PRK12309 transaldolase/EF-hand 28.4 1.2E+02 0.0026 33.4 6.1 53 312-382 333-385 (391)
98 PRK12772 bifunctional flagella 27.9 4.9E+02 0.011 30.6 11.3 27 638-665 442-468 (609)
99 PF07885 Ion_trans_2: Ion chan 27.6 3.3E+02 0.0071 22.0 9.1 55 602-664 23-78 (79)
100 TIGR00328 flhB flagellar biosy 27.3 5.6E+02 0.012 27.7 10.9 19 640-658 181-199 (347)
101 PRK05702 flhB flagellar biosyn 26.6 5.6E+02 0.012 27.9 10.8 22 638-659 186-207 (359)
102 smart00054 EFh EF-hand, calciu 26.4 67 0.0014 19.0 2.4 24 357-380 3-26 (29)
103 COG5249 RER1 Golgi protein inv 26.1 1.6E+02 0.0034 27.2 5.3 25 648-672 65-89 (180)
104 PRK12468 flhB flagellar biosyn 24.8 6.8E+02 0.015 27.6 11.1 11 568-578 104-114 (386)
105 PRK09108 type III secretion sy 22.5 7.5E+02 0.016 26.9 10.8 23 637-659 180-202 (353)
106 PRK06298 type III secretion sy 20.9 1.1E+03 0.024 25.6 12.6 30 637-667 179-208 (356)
No 1
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-62 Score=582.08 Aligned_cols=474 Identities=22% Similarity=0.329 Sum_probs=379.8
Q ss_pred HHHHHHHHHHHHhhHhheeccccccccccccchhhhHHHHHHHHHHHHHhhcCCccccccceeeeechhhHHHhhccHHH
Q 005027 138 YEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQL 217 (718)
Q Consensus 138 ~E~~~~~if~~e~~~k~~~~~~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~~~~~~r~~R~lR~l~li~~~~~~ 217 (718)
.|.+++.+|++|+++|+++.|...|++|.||++|++++++++++++.+.. .....+.+|++|+|||+|.+++.++|
T Consensus 877 ~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~~m 952 (1592)
T KOG2301|consen 877 ADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFPGM 952 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHcccc
Confidence 39999999999999999999998899999999999999999999998865 22467899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------------------------------cCccc
Q 005027 218 RDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV-----------------------------------QGNMV 262 (718)
Q Consensus 218 r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~-----------------------------------~~~~~ 262 (718)
|.++.++++++|.|+|+++++++++++||++|+|+|+|+. +.+-+
T Consensus 953 r~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~~n 1032 (1592)
T KOG2301|consen 953 RVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRKFN 1032 (1592)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEeccccc
Confidence 9999999999999999999999999999999999999741 02356
Q ss_pred cccHHHHHHHHHHHHhcCCCCcchHhhhhcch-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccc--CHH
Q 005027 263 FTSFGTTLYQMFVLFTTSNNPDVWIPAYKASR-------CFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFL--NKE 333 (718)
Q Consensus 263 F~~~~~s~~~lf~l~TtenwpdVm~pay~~~~-------~f~~~l~~~v~~~~~~r~~~l~~af~~l~~~~~~~~--~~~ 333 (718)
|||+++++++||++.|.+||+|+|+.+++.+. +.+.+....... -...-+|-.+.-- .+.+ +.+
T Consensus 1033 fDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvi------fii~~~ff~lnlF-vgvII~nf~ 1105 (1592)
T KOG2301|consen 1033 FDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVI------FIIIGSFFTLNLF-VGVIIDNFN 1105 (1592)
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhh------hhhHHhhhheeee-EEEEEechh
Confidence 99999999999999999999999999999876 110000000000 0000011100000 0000 110
Q ss_pred HHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHhhhhccccCccccccCCCCcCchHHHHHHH
Q 005027 334 QCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKA 413 (718)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~r~~~~~ 413 (718)
+-. +.... . ..+.++.+..+.....+.++ +++.. | ...+++|++++.
T Consensus 1106 ~q~--------------------~~~~~------~-~~~~eq~~~~~~~~~l~sk~--~~r~i---p-r~~~~~q~~~~~ 1152 (1592)
T KOG2301|consen 1106 QQK--------------------GKAGG------T-FMTEEQKKRLNAAKKLGSKP--PQRPI---P-RPRNKLQGLVFD 1152 (1592)
T ss_pred hhc--------------------hhhhh------h-hhhHHHHHHHHHHHHhcCCC--CCCCC---C-CCcchhhhHHHH
Confidence 000 00000 0 11222223333332222222 22211 1 224678999999
Q ss_pred hhcchhHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHH
Q 005027 414 FIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTW 493 (718)
Q Consensus 414 ~v~~~~f~~~i~~~Illn~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~iE~ilKi~a~G~~~y~~~~wn~fD~iivi 493 (718)
++.++.|++.+..++++|.+.++++++ .++......+.+++.+|+.+|++|+++|++|.|++.||+++||+||+++++
T Consensus 1153 ~v~~~~F~~~i~~li~ln~i~l~~~~~--~qs~~~~~~l~~in~vft~~Ft~E~vLKiiA~~~~~yf~~~WN~FDfvvvI 1230 (1592)
T KOG2301|consen 1153 LVTSQAFDYLIMLLIFLNTIIMMVETY--DQSDTYTAILTILNAVFIVLFTIECILKVIALRFRGYFTSAWNVFDFVVTI 1230 (1592)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccchheEeeeee
Confidence 999999999999999999999999876 566667778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 494 VIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQ 573 (718)
Q Consensus 494 ~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~ 573 (718)
++++..+++...+. +..+....++.|++|+.|.+|+++..+++|.+..|++.|+|++.++.+++++++++||++||+
T Consensus 1231 lSIv~~~ls~~~~~---~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq 1307 (1592)
T KOG2301|consen 1231 LSIVGIVLSEAVEK---YESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQ 1307 (1592)
T ss_pred HhHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998876653 223455779999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCCCCCCCCcccCccccccCcCChhHHHHHHHHhhcccCHHHHHHHHHh--------------hhC-Ccchhh
Q 005027 574 IFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKE--------------LTG-TAWTLA 638 (718)
Q Consensus 574 lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~egW~~im~~~~~--------------~~g-~~~~~i 638 (718)
+||.+..+ +- +.++||.+|++|++.||++.|+|||+++|+++.. .|| ..++.+
T Consensus 1308 ~Fg~Vkl~-~i-----------~~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~ 1375 (1592)
T KOG2301|consen 1308 LFGYVKLG-GI-----------NDHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGNNGTDCGNPTVAII 1375 (1592)
T ss_pred Hhhheecc-cc-----------CCCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCCcccccCCCCccee
Confidence 99999876 11 1148999999999999999999999999999765 367 588999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005027 639 YFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 672 (718)
Q Consensus 639 yFi~f~ll~~~i~lnLfiaviienF~~~~~~~~~ 672 (718)
||++|+++++++++|||||||+|||+..+++.++
T Consensus 1376 YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~ 1409 (1592)
T KOG2301|consen 1376 YFVSWILISSYIVVNLFVAVILENFSYATEDSSE 1409 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 9999999999999999999999999999887773
No 2
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-57 Score=489.22 Aligned_cols=481 Identities=20% Similarity=0.280 Sum_probs=374.1
Q ss_pred HHHHHHHHHHHhhHhheecc----ccccccccccchhhhHHHHHHHHHHHHHhhcCCccc---cccceeeeechhhHHHh
Q 005027 139 EGITLVILIIHTFFPITYEG----SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAF---NFLPLRIAPYIRVVFFI 211 (718)
Q Consensus 139 E~~~~~if~~e~~~k~~~~~----~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~---~~~~~r~~R~lR~l~li 211 (718)
+++|++||++|+.+|+++.| -.+|+++.||.+|.+++.++++|++++.... .+.. .++++|.+|.+||+|.|
T Consensus 1162 nyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa-~g~kILgVlrvLRlLRtlRpLRvi 1240 (1956)
T KOG2302|consen 1162 NYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASA-GGAKILGVLRVLRLLRTLRPLRVI 1240 (1956)
T ss_pred chHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhHHHHH
Confidence 68999999999999998666 4679999999999999999999999986531 1111 35678888999999999
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------------------CccccccH
Q 005027 212 LNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQ-------------------------GNMVFTSF 266 (718)
Q Consensus 212 ~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~-------------------------~~~~F~~~ 266 (718)
++.++++.++.++..+++.|+|+.++++-|+++|+++|+|||+|+.- ...+|+|.
T Consensus 1241 Sra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnl 1320 (1956)
T KOG2302|consen 1241 SRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNL 1320 (1956)
T ss_pred hhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchH
Confidence 99999999999999999999999999999999999999999997410 13469999
Q ss_pred HHHHHHHHHHHhcCCCCcchHhhhhcch---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccC
Q 005027 267 GTTLYQMFVLFTTSNNPDVWIPAYKASR---------------CFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLN 331 (718)
Q Consensus 267 ~~s~~~lf~l~TtenwpdVm~pay~~~~---------------~f~~~l~~~v~~~~~~r~~~l~~af~~l~~~~~~~~~ 331 (718)
+.++++||++.|-++|.+|||...++.. .|..++..- +|-++.-
T Consensus 1321 gqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIv--------------sffVlnm------- 1379 (1956)
T KOG2302|consen 1321 GQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIV--------------SFFVLNM------- 1379 (1956)
T ss_pred HHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHH--------------HHHHHHH-------
Confidence 9999999999999999999987655543 444443211 1111100
Q ss_pred HHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHhhhhccccCccccccCCCCcCchHHHHH
Q 005027 332 KEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKL 411 (718)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~r~~~ 411 (718)
-....++++.+.+. +..+++.. ..| +.....+.++.++.++.++... -++.|+.+
T Consensus 1380 --fVgvvvenfhKcrq--hqe~EeAr---------------Rre-EKrLrrlekkrR~Aq~kpyyse-----yt~~rrlI 1434 (1956)
T KOG2302|consen 1380 --FVGVVVENFHKCRQ--HQEAEEAR---------------RRE-EKRLRRLEKKRRAAQRKPYYSE-----YTMTRRLI 1434 (1956)
T ss_pred --HHHHHHHHHHHHHH--HHHHHHHH---------------HHH-HHHHHHHHHHHHhccCCccccc-----ccHHHHHH
Confidence 00000111111000 00000000 000 0111122223233223222211 25789999
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHH
Q 005027 412 KAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLV 491 (718)
Q Consensus 412 ~~~v~~~~f~~~i~~~Illn~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~iE~ilKi~a~G~~~y~~~~wn~fD~ii 491 (718)
.....+.+-+.+++++|.+|+|++..+.+ .+....++.+.+.++.|+++|+.|+++|.++.|+++||++.||.+|+.|
T Consensus 1435 h~~ctShyld~fit~ii~LnvVtms~ehy--qqp~sldealkycny~ft~vfV~EaV~klvafG~rrFfkdrwnqldlai 1512 (1956)
T KOG2302|consen 1435 HSKCTSHYLDQFITFIICLNVVTMSEEHY--QQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFGERRFFKDRWNQLDLAI 1512 (1956)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHH--hCcccHHHHhhhcceeeeehhHHHHHHHHHHHhHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999999876 5666677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 492 TWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLG 571 (718)
Q Consensus 492 vi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G 571 (718)
++.++.++.+.-+..+ .+.-.+..++|++|++|+.|++|+++.-.++|.+..|+++++|.+.++.++..+++++||.+|
T Consensus 1513 vlls~mgitleeie~n-aalpinptiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllffiyaalg 1591 (1956)
T KOG2302|consen 1513 VLLSVMGITLEEIEIN-AALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALG 1591 (1956)
T ss_pred HHHHHhcccHhheeec-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 9999888766543322 122336789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCCCCCCCcccCccccccCcCChhHHHHHHHHhhcccCHHHHHHHHHhhhC-------CcchhhhHhHHH
Q 005027 572 VQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTG-------TAWTLAYFVSFY 644 (718)
Q Consensus 572 ~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~egW~~im~~~~~~~g-------~~~~~iyFi~f~ 644 (718)
+++||.. .||++.++.+... +..|.||+.|++|||+++|++||+.+|.+..+.|. ...+.+||++|.
T Consensus 1592 velfg~l--ec~e~npceglsr----hatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls~~~sp~yfvsfv 1665 (1956)
T KOG2302|consen 1592 VELFGKL--ECNEENPCEGLSR----HATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLSQFVSPLYFVSFV 1665 (1956)
T ss_pred HHHhccc--ccCCCCCcccccc----ccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhhhhccchhhhhhh
Confidence 9999987 4666655544433 46899999999999999999999999999876653 356899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005027 645 LITVLLLLNLVIAFVLEAFFAEMELESSEKC 675 (718)
Q Consensus 645 ll~~~i~lnLfiaviienF~~~~~~~~~~~~ 675 (718)
+.+.++++|++|||++....+..++.++.++
T Consensus 1666 ltaqfvlvnvvvavlmkhleesnkea~edae 1696 (1956)
T KOG2302|consen 1666 LTAQFVLVNVVVAVLMKHLEESNKEAQEDAE 1696 (1956)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhhhhhh
Confidence 9999999999999999988876666555444
No 3
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-56 Score=487.86 Aligned_cols=268 Identities=25% Similarity=0.402 Sum_probs=234.7
Q ss_pred CchHHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhcccccccchhHHHH-HHHHHHHHHHHHHHHHHHHHhhcc----cc
Q 005027 404 HSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVW-QEVEFVFGWIYVLEMALKIYSYGF----EN 478 (718)
Q Consensus 404 ~s~~r~~~~~~v~~~~f~~~i~~~Illn~i~l~~~~~~~~~~~~~~~~~-~~~~~~f~~iF~iE~ilKi~a~G~----~~ 478 (718)
.+.+|-.|++++.|+.|+.++.++|++|||.++++++. ......+.++ ..-+++|+.||++|+.+|++|+|+ .+
T Consensus 1110 Q~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~-i~~~s~EriFltlsnyIFtaIfV~Em~lKVVALGl~fge~a 1188 (1956)
T KOG2302|consen 1110 QNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPA-IVEGSTERIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQA 1188 (1956)
T ss_pred ccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccc-cccCcceEEEEEecchHHHHHHHHHHHHHHHhhhhccchHH
Confidence 57899999999999999999999999999999999873 3333333433 445699999999999999999997 79
Q ss_pred cccccccchhHHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 479 YWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLG 558 (718)
Q Consensus 479 y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~ 558 (718)
|+++.||.+|++++.++++++++.....++ ..-.+++|++|++|.+|++|.+.+.++++.++.|++.|++.|.++++
T Consensus 1189 Yl~ssWN~LDgflv~vsviDilvs~asa~g---~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvl 1265 (1956)
T KOG2302|consen 1189 YLRSSWNVLDGFLVAVSVIDILVSQASAGG---AKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVL 1265 (1956)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHH
Confidence 999999999999999999999887665543 23456889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCCC-----CCCcccCcccc----ccCcCChhHHHHHHHHhhcccCHHHHHHHHHh
Q 005027 559 TIFCVQCIYCSLGVQIFGGIVNAGNAKL-----EETDLADDDYL----LFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKE 629 (718)
Q Consensus 559 l~~~~~~~fAi~G~~lF~g~~~~~~~~~-----~~~~~~~~~y~----~~nF~~f~~s~~tLf~i~t~egW~~im~~~~~ 629 (718)
+++.++++|+|+|+|+|+|+.+.|.... +.++|....|. ..||||.+.|+++||.+.|.+||.+||++-.+
T Consensus 1266 iccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgld 1345 (1956)
T KOG2302|consen 1266 ICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLD 1345 (1956)
T ss_pred HHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchh
Confidence 9999999999999999999999985332 23567777776 58999999999999999999999999998766
Q ss_pred hhC---------CcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005027 630 LTG---------TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 675 (718)
Q Consensus 630 ~~g---------~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~~~~~~ 675 (718)
..+ ++|..+|||+|.++..++++||||++++|||.+..+.+++++.
T Consensus 1346 avavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeA 1400 (1956)
T KOG2302|consen 1346 AVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEA 1400 (1956)
T ss_pred hceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 6999999999999999999999999999999998877766554
No 4
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-54 Score=518.22 Aligned_cols=517 Identities=18% Similarity=0.265 Sum_probs=372.8
Q ss_pred HHHHHHHHHHHHHhhHhheeccccccccccccchhhhHHHHHHHHHHHHHhhcCCccccccceeeeechhhHHHhhccHH
Q 005027 137 VYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 216 (718)
Q Consensus 137 ~~E~~~~~if~~e~~~k~~~~~~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~~~~~~r~~R~lR~l~li~~~~~ 216 (718)
+.|.+++.+|++|+.+|+++.|++.||+..||++|+++++..+++... .......++|.+|.+|++|+++.+|.
T Consensus 477 ~~~~vF~~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~~------~~~~g~svLr~frllRIfkl~k~wp~ 550 (1592)
T KOG2301|consen 477 LGNVVFTGLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELLL------KNVYGLSVLRSFRLLRIFKLIKSWPT 550 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhcc------cchHHHHHHHHHHHHHHHHHHHhhHH
Confidence 359999999999999999999999999999999999998855555441 11235679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----ccccccHHHHHHHHHHHHhcCCCCcchHhhhhc
Q 005027 217 LRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQG----NMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKA 292 (718)
Q Consensus 217 ~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~~----~~~F~~~~~s~~~lf~l~TtenwpdVm~pay~~ 292 (718)
+|.+++++..+.+.++++++++++++++||++|||+|+|.... ..+|+++++||+++|| +|+|+|.|+|+.+...
T Consensus 551 l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~~~fp~sfl~vFq-lt~e~W~evm~~~~~~ 629 (1592)
T KOG2301|consen 551 LNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHFTDFPHSFLSVFQ-ITCEEWTDVMWDCMEA 629 (1592)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccchhhCHHHHHHHHH-HcCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986432 2489999999999999 9999999999999888
Q ss_pred ch---------------------HHHHHHHHHHHHHH--HHHH----HHHHHHhh-------hhcccCccc----cCHHH
Q 005027 293 SR---------------------CFKSQLAKQVSEMD--RMRR----RTLGKAFN-------LIDNYNVGF----LNKEQ 334 (718)
Q Consensus 293 ~~---------------------~f~~~l~~~v~~~~--~~r~----~~l~~af~-------~l~~~~~~~----~~~~~ 334 (718)
.. -|.+.+++.+.... ..++ .+.+.+.. .......+. .....
T Consensus 630 ~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~el~~~e~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 709 (1592)
T KOG2301|consen 630 AGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFESDELKKPEQLKEREALQLARSRIPKGLRVVKAFITRPFMAAMRKMP 709 (1592)
T ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCChhhhhhHHhhhhhhhhhhhhhhhHhhhhcchhhHhhcccc
Confidence 75 11111111111000 0000 00000000 000000000 00000
Q ss_pred HHHH---HHHhhhhc--------------------cCCCCChHHHHHHHHHhhccCccccchhHHH-----HHHHHHh--
Q 005027 335 CIKL---FEELNKYR--------------------TLPNISREEFELIFDELDDTHDFKINLDEFA-----DLCNAIA-- 384 (718)
Q Consensus 335 ~~~~---~~~l~~~~--------------------~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~-----~~~~~~~-- 384 (718)
..+. ........ ..+..+..+....... +...+.....++.. ...+...
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 788 (1592)
T KOG2301|consen 710 KVRDSAVDHSLEIESNITEDEEFPKRIMKSNGSSRTSGSLSENDDASFISR-STKKAPKENAEQGEIEIRKLQLKRQEAE 788 (1592)
T ss_pred hhhhhhhhhchhcccccchhcccccccccccccccccccccchhhhhcccc-cccccccccccccccchhhhhhhhhhhh
Confidence 0000 00000000 0000000000000000 00000000000000 0000000
Q ss_pred -----------hhhcccc--------Cccccc-cCCCCcCchHHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhcccccc
Q 005027 385 -----------LRFQKED--------VPSCFE-NLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQ 444 (718)
Q Consensus 385 -----------~~~~~~~--------~~~~~~-~~p~~~~s~~r~~~~~~v~~~~f~~~i~~~Illn~i~l~~~~~~~~~ 444 (718)
....++. .++... ..+ .+.+ +|+.|+.+++|.||+.++..+|+++..+++.+.+..++
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~n-~r~~c~~iv~~~~f~~~I~~~illSs~ala~ed~~~~~ 866 (1592)
T KOG2301|consen 789 ETRNRIEEDLREFCKKEVCSKYGSQCDGSVDSAKGK-SWFN-IRKTCHIIVEHDWFEAFILTVILISSLALAFEDVRGEN 866 (1592)
T ss_pred hhcccccccchhhhhhccccccccccCccccccccc-cccc-ceeeeeeeeeeeHHHHHHHHHHHHhhhcccccCcchhh
Confidence 0000000 000000 111 2344 89999999999999999999999999999998876555
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHH
Q 005027 445 ESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLA 524 (718)
Q Consensus 445 ~~~~~~~~~~~~~~f~~iF~iE~ilKi~a~G~~~y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~ 524 (718)
....+..+.+.|++|+.+|++|+++|++|+|+..|+++.||++|+++++++++..+.... ....++.+|.+
T Consensus 867 ~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~---------~~~~ik~lr~l 937 (1592)
T KOG2301|consen 867 RPTINGILEYADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK---------ILSLIKSLRIL 937 (1592)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh---------hhhHHHHHHHH
Confidence 555678899999999999999999999999998899999999999999999999876433 23467999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCC-----------cccC
Q 005027 525 RMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEET-----------DLAD 593 (718)
Q Consensus 525 R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~-----------~~~~ 593 (718)
|+||++|.+.+++++|.++.+++.++|++++++++.++++++||++|+|+|+|+.+.|++...++ +++.
T Consensus 938 RaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~ 1017 (1592)
T KOG2301|consen 938 RALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECES 1017 (1592)
T ss_pred HHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999998764431 1111
Q ss_pred c----cc----cccCcCChhHHHHHHHHhhcccCHHHHHHHHHhhhC---------CcchhhhHhHHHHHHHHHHHHHHH
Q 005027 594 D----DY----LLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTG---------TAWTLAYFVSFYLITVLLLLNLVI 656 (718)
Q Consensus 594 ~----~y----~~~nF~~f~~s~~tLf~i~t~egW~~im~~~~~~~g---------~~~~~iyFi~f~ll~~~i~lnLfi 656 (718)
. +. ...||||+++|+++||++.|.+||.++|+..+|.+| +.+.++||+.|++++.++.+|+|+
T Consensus 1018 ~~~~~~~~w~n~~~nfDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFv 1097 (1592)
T KOG2301|consen 1018 LPRAPRRWWNNRKFNFDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFV 1097 (1592)
T ss_pred hhhccceEEeccccccccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeE
Confidence 1 01 248999999999999999999999999999999876 467899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 005027 657 AFVLEAFFAEMELESS 672 (718)
Q Consensus 657 aviienF~~~~~~~~~ 672 (718)
|+|++||+++.++...
T Consensus 1098 gvII~nf~~q~~~~~~ 1113 (1592)
T KOG2301|consen 1098 GVIIDNFNQQKGKAGG 1113 (1592)
T ss_pred EEEEechhhhchhhhh
Confidence 9999999998776655
No 5
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.88 E-value=1.8e-22 Score=200.01 Aligned_cols=198 Identities=28% Similarity=0.516 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--cccccccccchhHHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHH
Q 005027 454 EVEFVFGWIYVLEMALKIYSYGF--ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIR 531 (718)
Q Consensus 454 ~~~~~f~~iF~iE~ilKi~a~G~--~~y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lr 531 (718)
++|.++.++|++|.++|+++.|+ ++|++++||++|+++++..++..+........ ....++..+++|.+|++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~R~l~ 75 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSAS-----AQSLLRIFRLLRLLRLLR 75 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H-----HCHCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhccccccccccccccccccccccc-----ccceEEEEEeeccccccc
Confidence 47899999999999999999998 89999999999999988876665443222110 013568899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhHHHHHH
Q 005027 532 LLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTL 611 (718)
Q Consensus 532 li~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~s~~tL 611 (718)
+++..+.++....++.++.+.+..++.+++++++.||++|+++|++....|+... .+..++.+...+|++++.|+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~--~~~~~~~~~~~~f~~~~~s~~~~ 153 (200)
T PF00520_consen 76 LLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPT--WDSENDIYGYENFDSFGESLYWL 153 (200)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------SS----SSTHHHHSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhheecccccccccccc--ccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999987654321 11112223357999999999999
Q ss_pred HHhhcccCHHHHHHHHHhhhCCcchhhhHhHHHHHHHHHHHHHHHHHH
Q 005027 612 FNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFV 659 (718)
Q Consensus 612 f~i~t~egW~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfiavi 659 (718)
++++|++||+++++... ..++.++.+||++|+++++++++|+++|+|
T Consensus 154 ~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 154 FQTMTGEGWGDVMPSCM-SARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHTTTTCCCCHHHHH-HTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccc-cccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999999998766 334578899999999999999999999986
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.87 E-value=6e-21 Score=202.35 Aligned_cols=246 Identities=17% Similarity=0.220 Sum_probs=196.9
Q ss_pred chHHHHHHHhhcch-------hHHHHHHHHHHHHHHHHhhhcccccccchh----------------HHHHHHHHHHHHH
Q 005027 405 SPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQESSL----------------QSVWQEVEFVFGW 461 (718)
Q Consensus 405 s~~r~~~~~~v~~~-------~f~~~i~~~Illn~i~l~~~~~~~~~~~~~----------------~~~~~~~~~~f~~ 461 (718)
+.+|++++++++.| .|.....++|+++++.+|+.|.++.+.... +..+.++|.+|.+
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 45899999999864 588899999999999999998765543222 2458899999999
Q ss_pred HHHHHHHHHHHhhc-ccccccccccchhHHHHHHHHHHHHHHhcCCCCcccc-chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 462 IYVLEMALKIYSYG-FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFL-SNGEWIRYLLLARMLRLIRLLMHVQQY 539 (718)
Q Consensus 462 iF~iE~ilKi~a~G-~~~y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~~~-~~~~~lr~l~~~R~lR~lrli~~~~~l 539 (718)
+|++|+++|++... ..+|++++.|++|++.++..++++.+......+.... ..+.++|++|++|++|++||.|++.++
T Consensus 252 WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GL 331 (477)
T KOG3713|consen 252 WFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGL 331 (477)
T ss_pred HHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999664 3689999999999999999999988775543211111 233688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhHHHHHHHHhhcccC
Q 005027 540 RGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN 619 (718)
Q Consensus 540 r~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~eg 619 (718)
|.+..|+.+|...+.-++++ -++|+-+|+...|.-+.+.++ .+|.++|.|+++....||+-|
T Consensus 332 r~lg~Tlr~S~~ElglLllf--------L~~GI~iFStlvY~~Ek~~~~----------~~FtSIPa~~WWaiVTMTTVG 393 (477)
T KOG3713|consen 332 RTLGLTLRRSYRELGLLLLF--------LAVGIVIFSTLVYFAEKDEPD----------TKFTSIPAGFWWAVVTMTTVG 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhcCCC----------CCCccccchhheeeEEEeeec
Confidence 99999999999997544444 446666777666653322222 469999999999998888887
Q ss_pred HHHHHHHHHhhhCCcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005027 620 WQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 675 (718)
Q Consensus 620 W~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~~~~~~ 675 (718)
+. |+.+..+.+-...+-.++++++++.|+|.+|++||.+.+.+.+++++
T Consensus 394 YG-------Dm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~ 442 (477)
T KOG3713|consen 394 YG-------DMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREK 442 (477)
T ss_pred cc-------CccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHH
Confidence 54 45555777788888899999999999999999999999988776653
No 7
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.81 E-value=2e-18 Score=198.76 Aligned_cols=199 Identities=19% Similarity=0.228 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----ccccccccccchhHHHHHHHHHHHHHHhcC---------------------
Q 005027 452 WQEVEFVFGWIYVLEMALKIYSYG-----FENYWRDGQNRFDFLVTWVIVIGETITLAS--------------------- 505 (718)
Q Consensus 452 ~~~~~~~f~~iF~iE~ilKi~a~G-----~~~y~~~~wn~fD~iivi~~~i~~i~~~~~--------------------- 505 (718)
++++-.+|.++|+.+-+.++...| .++||+++||++|++++..++..+++.+..
T Consensus 1178 cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls 1257 (1634)
T PLN03223 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLS 1257 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhh
Confidence 355666777788888888887654 369999999999999999888877653210
Q ss_pred ----------CCCc----cccch-------hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 506 ----------PNGQ----TFLSN-------GE----WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTI 560 (718)
Q Consensus 506 ----------~~~~----~~~~~-------~~----~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~ 560 (718)
++.. ..+.+ .. +.-++-.++++|++|+++.+++++.+..|+..+.+.++.+++++
T Consensus 1258 ~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF 1337 (1634)
T PLN03223 1258 ASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIF 1337 (1634)
T ss_pred hhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 01 12234567888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhHHHHHHHHhhcccCHHHHHHHHHhhh--CCcchhh
Q 005027 561 FCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELT--GTAWTLA 638 (718)
Q Consensus 561 ~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~egW~~im~~~~~~~--g~~~~~i 638 (718)
+++++.||++|..+||... .+|.+|+.|+.|||++++++.+ .++++..... ...++.+
T Consensus 1338 ~IVF~AFAqLG~LLFGt~v-------------------e~FSTf~sSL~TLFqMLLGDfd-YF~eDLk~l~e~nrVLGPI 1397 (1634)
T PLN03223 1338 GMVFVGYAFIGHVIFGNAS-------------------VHFSDMTDSINSLFENLLGDIT-YFNEDLKNLTGLQFVVGMI 1397 (1634)
T ss_pred HHHHHHHHHHHHHHhccCc-------------------hhhcCHHHHHHHHHHHHHcCch-HHHHHHHhhhcccchHHHH
Confidence 9999999999999999873 3799999999999999998754 3344333222 2467899
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005027 639 YFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 670 (718)
Q Consensus 639 yFi~f~ll~~~i~lnLfiaviienF~~~~~~~ 670 (718)
||++|+++..+++||||||+|.++|++..+..
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999986554
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.1e-18 Score=172.57 Aligned_cols=247 Identities=15% Similarity=0.203 Sum_probs=188.5
Q ss_pred CchHHHHHHHhhcc-------hhHHHHHHHHHHHHHHHHhhhcccccccch-----------------------------
Q 005027 404 HSPFSEKLKAFIRS-------TKFGYMISIILIVNLVAVIVETTLDIQESS----------------------------- 447 (718)
Q Consensus 404 ~s~~r~~~~~~v~~-------~~f~~~i~~~Illn~i~l~~~~~~~~~~~~----------------------------- 447 (718)
+++++|.++-+.+- +....+..++|+++++..|++|-+...+..
T Consensus 170 ~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 249 (507)
T KOG1545|consen 170 RNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDT 249 (507)
T ss_pred cchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCccccccccc
Confidence 57788888877653 345667888999999999999865432210
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccccccchhHHHHHHHHHHHHHHhcCCCCcc----ccchhhHHHHH
Q 005027 448 -LQSVWQEVEFVFGWIYVLEMALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQT----FLSNGEWIRYL 521 (718)
Q Consensus 448 -~~~~~~~~~~~f~~iF~iE~ilKi~a~G~-~~y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~----~~~~~~~lr~l 521 (718)
....+-++|..|.++|++|.++|.+++.- ..|+++..|++|++.++..++++...+....+.+ ..-+..++|++
T Consensus 250 ~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRVi 329 (507)
T KOG1545|consen 250 KFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVI 329 (507)
T ss_pred ccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHH
Confidence 11245689999999999999999999876 4788999999999999999998887765543211 11134688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCc
Q 005027 522 LLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNF 601 (718)
Q Consensus 522 ~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF 601 (718)
|+.|++|++||-|++++++.+.+|+..|++.+. ++++|-.+|+-||+..+|..+.+.+ ..+|
T Consensus 330 RLVRVFRIFKLSRHSkGLQILGqTl~aSmrElg--------LLIFFlfIgviLFsSavYFAEade~----------~S~F 391 (507)
T KOG1545|consen 330 RLVRVFRIFKLSRHSKGLQILGQTLRASMRELG--------LLIFFLFIGVILFSSAVYFAEADEP----------ESHF 391 (507)
T ss_pred HHHHHhhheeeccccchHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhceeeeeecCCC----------ccCC
Confidence 999999999999999999999999999999864 2334555899999999887543322 2589
Q ss_pred CChhHHHHHHHHhhcccCHHHHHHHHHhhhCCcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005027 602 NDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 675 (718)
Q Consensus 602 ~~f~~s~~tLf~i~t~egW~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~~~~~~ 675 (718)
.+++.|+++....||+-|+.|+. .....| --..+.+.+++++.+.|.|.||+.||..-+..+.+.++
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~--P~TvgG-----KIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~ee 458 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMV--PVTVGG-----KIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE 458 (507)
T ss_pred CcCcccceEEEEEEEeeccccce--ecccCc-----eehhhHHhhhhheEecccccEEEecccceeeccccchh
Confidence 99999999998889999877653 222223 23346677788889999999999999997765554443
No 9
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.3e-17 Score=168.18 Aligned_cols=246 Identities=17% Similarity=0.204 Sum_probs=158.3
Q ss_pred CChhHHHHHhhHhHhhCCC---CCchhcccCChhhhHHHHHHHHHHHHHH-------HHHHHHHHhhhcccc-CcccccC
Q 005027 41 GSPYQKAAALVDLAEDGIG---LPEEILDRSSFESSAKFYFIFIKFDYIW-------SLNYFALIVLNFLEK-PLWCAKT 109 (718)
Q Consensus 41 ~~~~~~aa~~v~~a~~~~~---~~~~~~~~~~~~~~~~l~~~y~~~~~~~-------~~~~~~ll~l~~~e~-p~~~~~~ 109 (718)
-+=||+..+..+.-...++ .++..++.+.++++.|+..-|...+-.. ++++.+.++.-|+|+ |....+.
T Consensus 141 irFyqlG~eame~FredEG~~~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrder 220 (507)
T KOG1545|consen 141 IRFYQLGDEAMERFREDEGFIKPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDER 220 (507)
T ss_pred HHHHHhhHHHHHHHHhhcCCCCcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhc
Confidence 3446777776665554443 3344578889999999999888755433 333344455556663 2221110
Q ss_pred ---C--------CCcccCCCccccccCCCCCccchhHHHHHHHHHHHHHHHhhHhheeccccc-cccccccchhhhHHHH
Q 005027 110 ---G--------VGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPI-FWKSTYTRLKVLCLLI 177 (718)
Q Consensus 110 ---~--------~~~~~~~~~~~~~~~~~p~~~~~~s~~~E~~~~~if~~e~~~k~~~~~~~~-f~~~~~n~~d~~~~i~ 177 (718)
+ ....+.+.++-..++..-+-... .++|..|+++|+.|+++|..+++.+. |+||..|++|++.++.
T Consensus 221 d~~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~dPF--FiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~P 298 (507)
T KOG1545|consen 221 DLTGHFPAGTGGGVMNPTSGPELLDLGDTKFTDPF--FIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIP 298 (507)
T ss_pred cccccccccCCCcccCCCCCcccccccccccCCch--HhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 0 01111111111111122222233 45799999999999999999988776 9999999999999999
Q ss_pred HHHHHHHHHhhcCCcc------ccccceeeeechhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 178 LVADFLVYGLYLSPIA------FNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYV 251 (718)
Q Consensus 178 ~~i~~~~~~~~~~~~~------~~~~~~r~~R~lR~l~li~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~ 251 (718)
+++.+...+...+.++ -.+.++|+.|+.|++|.++.++ ..+-++.+-++++.-+.-+.|+.+|+++ |+.
T Consensus 299 yFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSR-HSkGLQILGqTl~aSmrElgLLIFFlfI----gvi 373 (507)
T KOG1545|consen 299 YFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSR-HSKGLQILGQTLRASMRELGLLIFFLFI----GVI 373 (507)
T ss_pred HHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeecc-ccchHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 9999988776432111 1344666666666666664332 2334455555666655556666666666 888
Q ss_pred Hhcc------cccCccccccHHHHHHHHHHHHhcCCCCcchHhhhhcch
Q 005027 252 IFED------TVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASR 294 (718)
Q Consensus 252 lF~~------~~~~~~~F~~~~~s~~~lf~l~TtenwpdVm~pay~~~~ 294 (718)
||+. .++.+++|.++++|||+.-+.+||.++.| |.|..-...
T Consensus 374 LFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGD-m~P~TvgGK 421 (507)
T KOG1545|consen 374 LFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGD-MVPVTVGGK 421 (507)
T ss_pred HHhceeeeeecCCCccCCCcCcccceEEEEEEEeecccc-ceecccCce
Confidence 8874 35567899999999999999999999988 456654433
No 10
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.63 E-value=4.4e-16 Score=154.07 Aligned_cols=153 Identities=20% Similarity=0.295 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHhhHhheeccc--cccccccccchhhhHHHHHHHHHHHHHhhcCCccccccceeeeechhhHHHhhccH
Q 005027 138 YEGITLVILIIHTFFPITYEGS--PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 215 (718)
Q Consensus 138 ~E~~~~~if~~e~~~k~~~~~~--~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~~~~~~r~~R~lR~l~li~~~~ 215 (718)
+|.+|.++|++|.++|++..|+ +.|++++||++|+++++...++.+.............+.+|++|.+|++++++..+
T Consensus 2 ~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~ 81 (200)
T PF00520_consen 2 LEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFR 81 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeeccccccccccccc
Confidence 5999999999999999999997 78999999999999999888776665431000012356888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------cCccccccHHHHHHHHHHHHhcCC
Q 005027 216 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV--------------QGNMVFTSFGTTLYQMFVLFTTSN 281 (718)
Q Consensus 216 ~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~--------------~~~~~F~~~~~s~~~lf~l~Tten 281 (718)
.+++.+.++.++++.+..++++++++++.||++|.++|+++. .+...|++++.|++++++++|+++
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~ 161 (200)
T PF00520_consen 82 SLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEG 161 (200)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTT
T ss_pred cccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCC
Confidence 999999999999999999999999999999999999999763 134679999999999999999999
Q ss_pred CCcchHhhh
Q 005027 282 NPDVWIPAY 290 (718)
Q Consensus 282 wpdVm~pay 290 (718)
|+|++.+.+
T Consensus 162 ~~~~~~~~~ 170 (200)
T PF00520_consen 162 WGDVMPSCM 170 (200)
T ss_dssp CCCCHHHHH
T ss_pred ccccccccc
Confidence 999998766
No 11
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.5e-15 Score=161.61 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhhHhheeccccc-cccccccchhhhHHHHHHHHHHHHHhhc------CCccccccceeeeechhhHHH
Q 005027 138 YEGITLVILIIHTFFPITYEGSPI-FWKSTYTRLKVLCLLILVADFLVYGLYL------SPIAFNFLPLRIAPYIRVVFF 210 (718)
Q Consensus 138 ~E~~~~~if~~e~~~k~~~~~~~~-f~~~~~n~~d~~~~i~~~i~~~~~~~~~------~~~~~~~~~~r~~R~lR~l~l 210 (718)
+|.+|.++|++|.++|+...+.+. |+|++-|++|++.++...+++.+..... ...+...+++|++|++|++++
T Consensus 245 vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KL 324 (477)
T KOG3713|consen 245 VETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKL 324 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 499999999999999998766544 9999999999999999999988875531 111223567778888888888
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccHHHHHHHHHHHHhcCCCCcchHhhh
Q 005027 211 ILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAY 290 (718)
Q Consensus 211 i~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~TtenwpdVm~pay 290 (718)
-+.+.++|.+-.++.++..+++-+++++..=+.+||-+.+.+=++. +.+.|.||+.++|+.-+.|||.|+.|+ +|..
T Consensus 325 aRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~--~~~~FtSIPa~~WWaiVTMTTVGYGDm-~P~T 401 (477)
T KOG3713|consen 325 ARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE--PDTKFTSIPAGFWWAVVTMTTVGYGDM-VPVT 401 (477)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCCccccchhheeeEEEeeecccCc-cccc
Confidence 8899999999999999999999999999999999998877666654 456699999999999999999999985 6776
Q ss_pred hcch
Q 005027 291 KASR 294 (718)
Q Consensus 291 ~~~~ 294 (718)
...+
T Consensus 402 ~~Gk 405 (477)
T KOG3713|consen 402 VLGK 405 (477)
T ss_pred cchH
Confidence 6555
No 12
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.49 E-value=9.6e-13 Score=146.40 Aligned_cols=188 Identities=19% Similarity=0.345 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHhcC------------CCCccccch------
Q 005027 453 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS------------PNGQTFLSN------ 514 (718)
Q Consensus 453 ~~~~~~f~~iF~iE~ilKi~a~G~~~y~~~~wn~fD~iivi~~~i~~i~~~~~------------~~~~~~~~~------ 514 (718)
+.+-.++.++|+...+.|+...| ++|+++.||++|++++++++...++.... .....+.+-
T Consensus 214 ~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~ 292 (425)
T PF08016_consen 214 EILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQW 292 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHH
Confidence 45566788889999999999999 79999999999999998887765543211 111111110
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCc
Q 005027 515 ----GEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETD 590 (718)
Q Consensus 515 ----~~~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~ 590 (718)
....-++-.+-.+|++|+++..+++..+..|+.++.+.++.++++++++++.||..|.-+||...
T Consensus 293 ~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~----------- 361 (425)
T PF08016_consen 293 DQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS----------- 361 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----------
Confidence 01233445556779999999999999999999999999999999999999999999999999763
Q ss_pred ccCccccccCcCChhHHHHHHHHhhccc-CHHHHHHHHHhhhCCcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 591 LADDDYLLFNFNDYPNGMVTLFNLLVMG-NWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 665 (718)
Q Consensus 591 ~~~~~y~~~nF~~f~~s~~tLf~i~t~e-gW~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~ 665 (718)
.+|.++..|+.+++.++.++ ++.++ ...+...+.+||++|.++..++++|+|+|++.++|.+
T Consensus 362 --------~~f~s~~~s~~tl~~~l~g~~~~~~~-----~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 362 --------EDFSSFSSSLVTLFRMLLGDFDYDEL-----YQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred --------cccCCHHHHHHHHHHHhcCCCchhhh-----hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 48999999999999999886 23322 1233466899999999999999999999999999975
No 13
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-12 Score=151.64 Aligned_cols=197 Identities=17% Similarity=0.302 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHhcC-------------CCCccccc-----h
Q 005027 453 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS-------------PNGQTFLS-----N 514 (718)
Q Consensus 453 ~~~~~~f~~iF~iE~ilKi~a~G~~~y~~~~wn~fD~iivi~~~i~~i~~~~~-------------~~~~~~~~-----~ 514 (718)
+.+-++|.++|+++.+.++.-.+.+.|+++.||++|+.++.++++..++.... .+...+.+ .
T Consensus 469 ~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~ 548 (798)
T KOG3599|consen 469 EVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQ 548 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Confidence 56777888999999999999888779999999999999999988876653221 11111111 1
Q ss_pred h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCC
Q 005027 515 G-----EWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEET 589 (718)
Q Consensus 515 ~-----~~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~ 589 (718)
+ .++-++..+-.+|++|+++.++.++.+-.|+.++.++++.+++..+++++.||++|..+||...
T Consensus 549 ~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v---------- 618 (798)
T KOG3599|consen 549 WNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV---------- 618 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----------
Confidence 1 1223345556679999999999999999999999999999999999999999999999999985
Q ss_pred cccCccccccCcCChhHHHHHHHHhhcccCHHHHHHHHHhhhCCcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 590 DLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMEL 669 (718)
Q Consensus 590 ~~~~~~y~~~nF~~f~~s~~tLf~i~t~egW~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~ 669 (718)
.||.||.+|++|++..+-++ +-.......+...+.+||.++.+++.++++|||+|+|.+.|.+....
T Consensus 619 ---------~~f~~f~~s~~t~~~~~~G~----~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~ 685 (798)
T KOG3599|consen 619 ---------SDFRTFVASIVTLLRYILGD----FCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKAD 685 (798)
T ss_pred ---------CChHHHHHHHHHHHHHHhcc----CCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 48999999999999888771 11111222333558999999999999999999999999999998766
Q ss_pred hhh
Q 005027 670 ESS 672 (718)
Q Consensus 670 ~~~ 672 (718)
.++
T Consensus 686 ~~~ 688 (798)
T KOG3599|consen 686 LAK 688 (798)
T ss_pred Hhh
Confidence 655
No 14
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.40 E-value=3.5e-15 Score=151.69 Aligned_cols=236 Identities=14% Similarity=0.133 Sum_probs=176.6
Q ss_pred chHHHHHHHhhcch-------hHHHHHHHHHHHHHHHHhhhcccccccch----------hHHHHHHHHHHHHHHHHHHH
Q 005027 405 SPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQESS----------LQSVWQEVEFVFGWIYVLEM 467 (718)
Q Consensus 405 s~~r~~~~~~v~~~-------~f~~~i~~~Illn~i~l~~~~~~~~~~~~----------~~~~~~~~~~~f~~iF~iE~ 467 (718)
..+|+++++..+++ .|.++..+.|.+++++-.++|.+-..... +...+-.++..|+.||+.|.
T Consensus 165 ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EY 244 (632)
T KOG4390|consen 165 LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEY 244 (632)
T ss_pred chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHH
Confidence 56899999998876 58899999999999999998875443222 11233457889999999999
Q ss_pred HHHHHhhcc-cccccccccchhHHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 468 ALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATF 546 (718)
Q Consensus 468 ilKi~a~G~-~~y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrli~~~~~lr~l~~tl 546 (718)
+||+++..- .+|.|+...++|.+.+....|+++++-..+.+ +..--+|+||++|++|.-|+++++|.+..|+
T Consensus 245 lLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVS-------GaFVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T KOG4390|consen 245 LLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVS-------GAFVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCcccc-------ceeEEEEeeeeeeeeeecccccccchhhhhH
Confidence 999997754 47789999999999888888776654222211 1123368899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhHHHHHHHHhhcccCHHHHHHH
Q 005027 547 LTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQS 626 (718)
Q Consensus 547 ~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~egW~~im~~ 626 (718)
..+...++-++.-+-+-+++||.+...-=+|. + ..+|.+++.|++--...||+-|+.|+.
T Consensus 318 KSCASELGFLlFSLtMAIIIFATvMfYAEKg~--------~----------at~FTsIPaaFWYTIVTmTTLGYGDMV-- 377 (632)
T KOG4390|consen 318 KSCASELGFLLFSLTMAIIIFATVMFYAEKGS--------S----------ATKFTSIPAAFWYTIVTMTTLGYGDMV-- 377 (632)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhccc--------c----------ccccccCcHhHhhheeeeeeccccccc--
Confidence 99998887665555555556665432222222 1 258999999999777777877765543
Q ss_pred HHhhhCCcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005027 627 YKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 672 (718)
Q Consensus 627 ~~~~~g~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~~~ 672 (718)
.+..++-.|.+.+-+++++++.|.|.||+.||+..+.+.+.
T Consensus 378 -----p~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQR 418 (632)
T KOG4390|consen 378 -----PSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQR 418 (632)
T ss_pred -----hHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhh
Confidence 44556667778888899999999999999999998765543
No 15
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.24 E-value=3.1e-10 Score=135.54 Aligned_cols=216 Identities=13% Similarity=0.012 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHhc-----CCCCc----------cccchhh
Q 005027 452 WQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLA-----SPNGQ----------TFLSNGE 516 (718)
Q Consensus 452 ~~~~~~~f~~iF~iE~ilKi~a~G~~~y~~~~wn~fD~iivi~~~i~~i~~~~-----~~~~~----------~~~~~~~ 516 (718)
.+++-......+..+.+..++..|...|+++.||++|++.....+...+.... ..... .......
T Consensus 391 ~e~~~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (743)
T TIGR00870 391 LEMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEA 470 (743)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHH
Confidence 34444556666777888888888988999999999999665444443322110 00000 0000123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-CCCCCcccCc
Q 005027 517 WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP-SLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNA-KLEETDLADD 594 (718)
Q Consensus 517 ~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~-~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~-~~~~~~~~~~ 594 (718)
.+-+..++..+|++.+++.++.+.-+..++.+.+. .++.++++++++++-||+....+|+........ ..+.++ ...
T Consensus 471 l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~-~~~ 549 (743)
T TIGR00870 471 LFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHA-RSC 549 (743)
T ss_pred HHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccc
Confidence 44556777777888877888887778888999988 999999999999999999999999764321100 000000 000
Q ss_pred cccccCcCChhHHHHHHHHhhcccCHHHHHHHHHhhhCCcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005027 595 DYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELES 671 (718)
Q Consensus 595 ~y~~~nF~~f~~s~~tLf~i~t~egW~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~~ 671 (718)
......|.++..++.+||..+-|++-. . .........++.++|++|.+++.++++||+||++-+.|++..+.+.
T Consensus 550 ~~~~~~f~~~~~s~~~lf~~~~G~~~~--~-~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~ 623 (743)
T TIGR00870 550 EKQGNAYSTLFETSQELFWAIIGLGDL--L-ANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDAD 623 (743)
T ss_pred ccccccccCHHHHHHHHHHHHcCCccc--c-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH
Confidence 112368999999999999888776432 1 1111222366899999999999999999999999999998765543
No 16
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.04 E-value=7.7e-09 Score=120.99 Aligned_cols=188 Identities=10% Similarity=0.041 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHH---HHHhhHhheec-----cccccccccccchhhhHHHHHHHHHHHHHhhc-----------------
Q 005027 135 SLVYEGITLVIL---IIHTFFPITYE-----GSPIFWKSTYTRLKVLCLLILVADFLVYGLYL----------------- 189 (718)
Q Consensus 135 s~~~E~~~~~if---~~e~~~k~~~~-----~~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~----------------- 189 (718)
.+++|+++++++ +.+=+.++.-. +.+.||+++||++|++++++++.-++++....
T Consensus 1175 vLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK 1254 (1634)
T PLN03223 1175 RFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYK 1254 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhh
Confidence 355677654443 34444444322 23569999999999999988888776542110
Q ss_pred --CC----------cc-------c--------c---c---c-ceeeeechhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 005027 190 --SP----------IA-------F--------N---F---L-PLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVL 235 (718)
Q Consensus 190 --~~----------~~-------~--------~---~---~-~~r~~R~lR~l~li~~~~~~r~~~~~l~~~l~~i~~v~ 235 (718)
+. .. . . + . +.=.++.+|++|+++..|.|+.+..++.+++++++..+
T Consensus 1255 ~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~ 1334 (1634)
T PLN03223 1255 NLSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFF 1334 (1634)
T ss_pred hhhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0 0 0 0 01124667888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCccccccHHHHHHHHHHHHhcCCC--CcchHhhhhcch-----HHHHHHHHHHHHHH
Q 005027 236 ALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNN--PDVWIPAYKASR-----CFKSQLAKQVSEMD 308 (718)
Q Consensus 236 ~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~Ttenw--pdVm~pay~~~~-----~f~~~l~~~v~~~~ 308 (718)
++++++++.||++|..+||... ..|.++..|+.+||++++.+-+ .+.+.+....++ .|..|....+....
T Consensus 1335 IIF~IVF~AFAqLG~LLFGt~v---e~FSTf~sSL~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILL 1411 (1634)
T PLN03223 1335 VIFGMVFVGYAFIGHVIFGNAS---VHFSDMTDSINSLFENLLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILF 1411 (1634)
T ss_pred HHHHHHHHHHHHHHHHHhccCc---hhhcCHHHHHHHHHHHHHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 4799999999999999987433 122323322233 34444433333333
Q ss_pred HHHHHHHHHHhhhhccc
Q 005027 309 RMRRRTLGKAFNLIDNY 325 (718)
Q Consensus 309 ~~r~~~l~~af~~l~~~ 325 (718)
..--..+..+|...+.+
T Consensus 1412 NMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1412 NFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33344455566555443
No 17
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.84 E-value=3.4e-08 Score=106.13 Aligned_cols=240 Identities=15% Similarity=0.190 Sum_probs=153.0
Q ss_pred HHHHHHhhcch------hHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----
Q 005027 408 SEKLKAFIRST------KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF----- 476 (718)
Q Consensus 408 r~~~~~~v~~~------~f~~~i~~~Illn~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~iE~ilKi~a~G~----- 476 (718)
+.+++++.+.| .++.++.++++.++|+-.+.|.. +........+.++|+++.++|.+|+++|+++.|-
T Consensus 78 q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~-e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~rYr 156 (654)
T KOG1419|consen 78 QNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIE-EYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCRYR 156 (654)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 34566666543 35556666666666665555532 2223455678899999999999999999998763
Q ss_pred -----cccccccccchhHHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 477 -----ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP 551 (718)
Q Consensus 477 -----~~y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~ 551 (718)
-.|-+++..++|+++++.+++.+.+ .+.+.- -....+|-+|.+.+||++|+=|+-...+.+...+..--+
T Consensus 157 G~~GRLrFarkp~cvIDiivi~Asi~vl~~---g~qG~v--fatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ 231 (654)
T KOG1419|consen 157 GWYGRLRFARKPFCVIDIIVIIASIAVLAA---GSQGNV--FATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSK 231 (654)
T ss_pred cceeeEEeecCCceEEEEeeeeeeeeEEEe---cCccce--eehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHH
Confidence 3667899999999988877543322 111111 123456788888888888887877777777777765555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhHHHHHHHHhhcccCHHHHHHHHHhhh
Q 005027 552 SLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELT 631 (718)
Q Consensus 552 ~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~egW~~im~~~~~~~ 631 (718)
.++....+-|+.+ +|+.+-+.+=.-...+ .+ ....|.++..|+++=...+|+-| |.|.+
T Consensus 232 ELiTt~YIGFL~L-IfsSflVYLaEKd~~~-------e~------~n~~F~TyADALWWG~ITltTIG-------YGDk~ 290 (654)
T KOG1419|consen 232 ELITTWYIGFLVL-IFSSFLVYLAEKDAQG-------EG------TNDEFPTYADALWWGVITLTTIG-------YGDKT 290 (654)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhccccc-------cc------ccccchhHHHHHHhhheeEEeec-------cCCcC
Confidence 5554444433322 3333333322211111 00 02479999999985544444444 67777
Q ss_pred CCcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005027 632 GTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 674 (718)
Q Consensus 632 g~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~~~~~ 674 (718)
+..|..-+..+..-+.++-+..|.-|++-..|.-..+++..++
T Consensus 291 P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQK 333 (654)
T KOG1419|consen 291 PQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQK 333 (654)
T ss_pred cccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHH
Confidence 7788777777777777777888999999888887665554433
No 18
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.79 E-value=2.6e-09 Score=109.45 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhhHhheecccc-ccccccccchhhhHHHHHHHHHHHHHhhcCCccccccceeeeechhhHHHhhccHH
Q 005027 138 YEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 216 (718)
Q Consensus 138 ~E~~~~~if~~e~~~k~~~~~~~-~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~~~~~~r~~R~lR~l~li~~~~~ 216 (718)
+|.+|++||+.|.++|.++-+.+ .|.|+-+.++|++.++.+.|.+++.-.. ......-.+|++|+.|.+++-+.+.+
T Consensus 232 lDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~--DVSGaFVTLRVFRVFRIFKFSRHSQG 309 (632)
T KOG4390|consen 232 LDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNE--DVSGAFVTLRVFRVFRIFKFSRHSQG 309 (632)
T ss_pred ecceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCc--cccceeEEEEeeeeeeeeeecccccc
Confidence 49999999999999998865554 3889999999988888777766554221 22223457888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccCccccccHHHHHHHHHHHHhcCCCCcchHhhhhcch
Q 005027 217 LRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIF-EDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASR 294 (718)
Q Consensus 217 ~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF-~~~~~~~~~F~~~~~s~~~lf~l~TtenwpdVm~pay~~~~ 294 (718)
+|.+=-.+..-..+++-+++-+-.-+++|| ..+| .++....+.|.+++.+||--.+.+||=|+.|. .|..-...
T Consensus 310 LRILGYTLKSCASELGFLlFSLtMAIIIFA---TvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDM-Vp~TIaGK 384 (632)
T KOG4390|consen 310 LRILGYTLKSCASELGFLLFSLTMAIIIFA---TVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDM-VPSTIAGK 384 (632)
T ss_pred cchhhhhHHHHHHHHhHHHHHHHHHHHHHH---HHHHhhhccccccccccCcHhHhhheeeeeecccccc-chHHHHHH
Confidence 887665555444444444443333444444 3344 33333467899999999999999999999885 45544433
No 19
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.75 E-value=1.5e-07 Score=106.61 Aligned_cols=210 Identities=13% Similarity=0.124 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHhcC----CCCc-------------cccchhhHHHHH
Q 005027 459 FGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS----PNGQ-------------TFLSNGEWIRYL 521 (718)
Q Consensus 459 f~~iF~iE~ilKi~a~G~~~y~~~~wn~fD~iivi~~~i~~i~~~~~----~~~~-------------~~~~~~~~lr~l 521 (718)
-+.=++.|-+-.++..|.+.|+++.||++|+..+.+.+...++.... .... ..+-..+...+.
T Consensus 393 wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAiA 472 (822)
T KOG3609|consen 393 WVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAIA 472 (822)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHHH
Confidence 33445667778888999999999999999999887766665542110 0000 001112345666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCc
Q 005027 522 LLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNF 601 (718)
Q Consensus 522 ~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF 601 (718)
.+|-.+|++-++..++.+.-+--++.+.+..+..++++..++++.|++--.|++......-....++..+... ..|
T Consensus 473 ~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~----~~f 548 (822)
T KOG3609|consen 473 NVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTT----DSF 548 (822)
T ss_pred HHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccc----ccc
Confidence 7788888888888888888888889999999999999999999999976666665543221101111111111 279
Q ss_pred CChhHHHHHHHH-hhcccCHHHHHHHHHhhhCCcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005027 602 NDYPNGMVTLFN-LLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 672 (718)
Q Consensus 602 ~~f~~s~~tLf~-i~t~egW~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~~~ 672 (718)
.++..+.-+||= +.+.-+=..++..+...-...++.+-|.+|+++..+++|||.||.+-.+|++..+.+..
T Consensus 549 sti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADv 620 (822)
T KOG3609|consen 549 STIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADV 620 (822)
T ss_pred ccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchh
Confidence 999999999872 21111100001011111113567999999999999999999999999999997655443
No 20
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.26 E-value=3.7e-05 Score=92.96 Aligned_cols=222 Identities=12% Similarity=0.053 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh------c---------cccccccc
Q 005027 419 KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY------G---------FENYWRDG 483 (718)
Q Consensus 419 ~f~~~i~~~Illn~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~iE~ilKi~a~------G---------~~~y~~~~ 483 (718)
+|+.++.++++.+++.+.++..... ......+.+++.++.++|.+|++++...- | .++|++ .
T Consensus 63 ~Wd~~~~~~~~y~~~~~p~~~~F~~--~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~ 139 (823)
T PLN03192 63 WWETLMVVLVAYSAWVYPFEVAFLN--ASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-T 139 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeC--CCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-H
Confidence 6788889999988888777654321 11223456789999999999999998632 1 156775 4
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 484 QNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCV 563 (718)
Q Consensus 484 wn~fD~iivi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~ 563 (718)
|-++|++.++...+... +. .+... ....+++++++|++|+.|+.+.+..+..-...- ...-.+..++++++++
T Consensus 140 ~f~~Dlis~lP~~~i~~--~~-~~~~~---~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~-~~~~~~~kli~~~l~~ 212 (823)
T PLN03192 140 WFLMDVASTIPFQALAY--LI-TGTVK---LNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFS-YFWIRCARLLSVTLFL 212 (823)
T ss_pred hHHHHHHHHhHHHHHHH--Hh-cCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence 88999987665432211 11 11111 111234444444444444444444444322211 1111233344444444
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcC------ChhHHHHHHHHhhcccCHHHHHHHHHhhhCCcchh
Q 005027 564 QCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN------DYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTL 637 (718)
Q Consensus 564 ~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~------~f~~s~~tLf~i~t~egW~~im~~~~~~~g~~~~~ 637 (718)
...+|++...+....... + .+.... ...||. -+..|+++.+..+|+-|+.|+. +....-
T Consensus 213 ~H~~aC~~y~i~~~~~~~-~----~~Wi~~---~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~-------p~t~~E 277 (823)
T PLN03192 213 VHCAGCLYYLIADRYPHQ-G----KTWIGA---VIPNFRETSLWIRYISAIYWSITTMTTVGYGDLH-------AVNTIE 277 (823)
T ss_pred HHHHHHHHHHHHhhcCCC-C----CchHHH---hhhccccCcHHHHHHHHHHHHHHHHhhccCCCcC-------CCccch
Confidence 445555544433211110 0 000000 001232 2555777777777777766653 222223
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 638 AYFVSFYLITVLLLLNLVIAFVLEAFFA 665 (718)
Q Consensus 638 iyFi~f~ll~~~i~lnLfiaviienF~~ 665 (718)
..|.+++++.++.+....+|.+.+-+.+
T Consensus 278 ~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 278 MIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666666554433
No 21
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=98.12 E-value=1.1e-05 Score=89.92 Aligned_cols=139 Identities=19% Similarity=0.299 Sum_probs=101.5
Q ss_pred HHHHH---HHHHHHHHhhHhheeccccccccccccchhhhHHHHHHHHHHHHHhhc-----------CC--ccccc----
Q 005027 137 VYEGI---TLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL-----------SP--IAFNF---- 196 (718)
Q Consensus 137 ~~E~~---~~~if~~e~~~k~~~~~~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~-----------~~--~~~~~---- 196 (718)
++|++ +++.|+..-+.|+.-.| +.|++++||++|+++++++++.++...... .. ...+.
T Consensus 212 ~~~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a 290 (425)
T PF08016_consen 212 LCEILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELA 290 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHH
Confidence 33554 34455566666776667 569999999999999988887666653210 00 00000
Q ss_pred ---ccee-------eeechhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccH
Q 005027 197 ---LPLR-------IAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSF 266 (718)
Q Consensus 197 ---~~~r-------~~R~lR~l~li~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~ 266 (718)
...+ .+-.+|.+++++..|.++.+.+++.++.++++..+++++++++-||.+|..+||... ..|.++
T Consensus 291 ~~~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~---~~f~s~ 367 (425)
T PF08016_consen 291 QWDQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS---EDFSSF 367 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---cccCCH
Confidence 0000 113456666666779999999999999999999999999999999999999998763 469999
Q ss_pred HHHHHHHHHHHhc
Q 005027 267 GTTLYQMFVLFTT 279 (718)
Q Consensus 267 ~~s~~~lf~l~Tt 279 (718)
..|+.+++.++-.
T Consensus 368 ~~s~~tl~~~l~g 380 (425)
T PF08016_consen 368 SSSLVTLFRMLLG 380 (425)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988765
No 22
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.79 E-value=6.8e-05 Score=87.95 Aligned_cols=135 Identities=11% Similarity=0.114 Sum_probs=100.3
Q ss_pred HHHHHHHHhhHhheeccccccccccccchhhhHHHHHHHHHHHHHhhcCCccc--------------c-------cccee
Q 005027 142 TLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAF--------------N-------FLPLR 200 (718)
Q Consensus 142 ~~~if~~e~~~k~~~~~~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~--------------~-------~~~~r 200 (718)
+.+.|+++-+.++.-.+.+.|++++||++|++++.++++-+++.+...+.... . ...++
T Consensus 475 ~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~ 554 (798)
T KOG3599|consen 475 FVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAAR 554 (798)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 34455677777776446656999999999999999999877776432100000 0 00111
Q ss_pred ee-------echhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccHHHHHHHH
Q 005027 201 IA-------PYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQM 273 (718)
Q Consensus 201 ~~-------R~lR~l~li~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~l 273 (718)
.+ =-+|.+++++..+.++..-+++.+++++|+..++..+++++-||.+|+.+||... ..|.|+.+|+.++
T Consensus 555 ~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v---~~f~~f~~s~~t~ 631 (798)
T KOG3599|consen 555 NLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV---SDFRTFVASIVTL 631 (798)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---CChHHHHHHHHHH
Confidence 11 2345556666678999999999999999999999999999999999999999874 4699999999999
Q ss_pred HHHHhc
Q 005027 274 FVLFTT 279 (718)
Q Consensus 274 f~l~Tt 279 (718)
+-..=.
T Consensus 632 ~~~~~G 637 (798)
T KOG3599|consen 632 LRYILG 637 (798)
T ss_pred HHHHhc
Confidence 887655
No 23
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00015 Score=78.70 Aligned_cols=149 Identities=16% Similarity=0.163 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHhhHhhe-------eccc---cccccccccchhhhHHHHHHHHHHHHHhhcCCcc--ccccceeeee
Q 005027 136 LVYEGITLVILIIHTFFPIT-------YEGS---PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIA--FNFLPLRIAP 203 (718)
Q Consensus 136 ~~~E~~~~~if~~e~~~k~~-------~~~~---~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~--~~~~~~r~~R 203 (718)
+++|++.+++|.+|.++|++ |-|| -.|-++|-.++|+++++.+++-+... ..+ .....+|-+|
T Consensus 128 ~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g-----~qG~vfatSalrslR 202 (654)
T KOG1419|consen 128 YILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAG-----SQGNVFATSALRSLR 202 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEec-----CccceeehhhhhhhH
Confidence 45699999999999999987 2333 33889999999998887774422111 111 1234566666
Q ss_pred chhhHHHhhc--cHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccCccccccHHHHHHHHH
Q 005027 204 YIRVVFFILN--IRQLRDTLFVLA----GMLGTYLNVLALGLLFLLFSSWLAYVIFEDT---VQGNMVFTSFGTTLYQMF 274 (718)
Q Consensus 204 ~lR~l~li~~--~~~~r~~~~~l~----~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~---~~~~~~F~~~~~s~~~lf 274 (718)
.|-.+|+++. -.+..+++.++. +-+-+-.++.+| .+||+-+-+.+=... ++++..|.++.+|+|+=-
T Consensus 203 FlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL----~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ 278 (654)
T KOG1419|consen 203 FLQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFL----VLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGV 278 (654)
T ss_pred HHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHhhcccccccccccchhHHHHHHhhh
Confidence 6666666642 225556666544 233333344333 344444455554432 224567999999999999
Q ss_pred HHHhcCCCCcchHhhhhcch
Q 005027 275 VLFTTSNNPDVWIPAYKASR 294 (718)
Q Consensus 275 ~l~TtenwpdVm~pay~~~~ 294 (718)
+.+||-|+.|. +|-..-.+
T Consensus 279 ITltTIGYGDk-~P~TWlGr 297 (654)
T KOG1419|consen 279 ITLTTIGYGDK-TPQTWLGR 297 (654)
T ss_pred eeEEeeccCCc-CcccchhH
Confidence 99999999997 46555555
No 24
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.0056 Score=64.68 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcC
Q 005027 523 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN 602 (718)
Q Consensus 523 ~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~ 602 (718)
++-.+-++|-+-.++....++-|+..++|+++.+..-..+++.-|..-|.-+-|. ++..|.
T Consensus 384 LLVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGP-------------------YHdKFr 444 (566)
T KOG3733|consen 384 LLVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGP-------------------YHDKFR 444 (566)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecc-------------------hHHhhh
Confidence 3445566677788899999999999999999887776666555444333322222 145788
Q ss_pred ChhHHHHHHHHhhcccCHHHHHHHHHhhhCC-cc--hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005027 603 DYPNGMVTLFNLLVMGNWQVWMQSYKELTGT-AW--TLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 670 (718)
Q Consensus 603 ~f~~s~~tLf~i~t~egW~~im~~~~~~~g~-~~--~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~ 670 (718)
+...---.||.+..|++--..... +..-.. .| +.+|..+|+-+-.|++|+||||+|.++|.....-.
T Consensus 445 sLntvsECLFSLINGDDMFaTFA~-mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~~q 514 (566)
T KOG3733|consen 445 SLNTVSECLFSLINGDDMFATFAT-MQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKAYQ 514 (566)
T ss_pred hHHHHHHHHHHhhCchhHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 888888888988888764433321 222111 22 79999999999999999999999999998855443
No 25
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.38 E-value=0.0041 Score=70.96 Aligned_cols=172 Identities=12% Similarity=0.148 Sum_probs=121.1
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 477 ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPY 556 (718)
Q Consensus 477 ~~y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~ 556 (718)
+.||-+.-|++|.++...+++.....+. ....-.+|..-.+.-.|-..+++-++++++.+...+..+......++.+
T Consensus 589 ~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk~ 665 (929)
T KOG0510|consen 589 RHYFMDIENIMEWFIYTSALITVYPLFF---EITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLKS 665 (929)
T ss_pred HHHHhhhHHHHHHHHHhhhhheeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHHH
Confidence 6899999999999988877765432211 1110001222234455666788888899998888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhHHHHHHHHhhcccC-HHHHHHHHHhhhC---
Q 005027 557 LGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN-WQVWMQSYKELTG--- 632 (718)
Q Consensus 557 ~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~eg-W~~im~~~~~~~g--- 632 (718)
+.+..++++.|++--.-+|+.. ..|.|.+-|...-|.+|.||. .+..|..-.-..+
T Consensus 666 f~vfs~lliaF~lsFYVll~~~--------------------~eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~ 725 (929)
T KOG0510|consen 666 FMVFSILLIAFGLSFYVLLNKS--------------------SEFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLA 725 (929)
T ss_pred HHHHHHHHHHhhhhheeeecCC--------------------CCcCCCcchhhhhHHHhhcccccccccccchhhcCccc
Confidence 8888888888887766666655 258889999999999999884 2223222111111
Q ss_pred -CcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005027 633 -TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELES 671 (718)
Q Consensus 633 -~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~~ 671 (718)
...+.+-|++|.++..++++||.||+-+.--+...+..+
T Consensus 726 ~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~A~ 765 (929)
T KOG0510|consen 726 HPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKHAE 765 (929)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 245788999999999999999999999887776554443
No 26
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=97.36 E-value=0.025 Score=67.07 Aligned_cols=147 Identities=13% Similarity=0.170 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-----CCC-C------------CCCc
Q 005027 529 LIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG-----NAK-L------------EETD 590 (718)
Q Consensus 529 ~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~-----~~~-~------------~~~~ 590 (718)
++-++.+=..+..+++++.+-.+++.--+++-+++.|.|+|+|...|.+..+-. |+. . +...
T Consensus 2398 LFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~t 2477 (2706)
T KOG3533|consen 2398 LFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSET 2477 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCcccc
Confidence 445555566777777777777778877788888899999999999999876321 100 0 0000
Q ss_pred ccCcccc---------ccCcCChhHHHHHHHHhhc---------ccCHHHHHHHHHhhhC-CcchhhhHhHHHHHHHHHH
Q 005027 591 LADDDYL---------LFNFNDYPNGMVTLFNLLV---------MGNWQVWMQSYKELTG-TAWTLAYFVSFYLITVLLL 651 (718)
Q Consensus 591 ~~~~~y~---------~~nF~~f~~s~~tLf~i~t---------~egW~~im~~~~~~~g-~~~~~iyFi~f~ll~~~i~ 651 (718)
|...+++ ...=+.--.|-=||+-+.. |.|-.|++-....-.+ -.|-.+|=..|+++..+|+
T Consensus 2478 c~~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIV 2557 (2706)
T KOG3533|consen 2478 CPSENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIV 2557 (2706)
T ss_pred CCCCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 0000110 0112233444445544332 2333444322111111 1234567788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 005027 652 LNLVIAFVLEAFFAEMELESSEKC 675 (718)
Q Consensus 652 lnLfiaviienF~~~~~~~~~~~~ 675 (718)
|||.-|||+|.|.....++.++++
T Consensus 2558 LNLIFGVIIDTFaDLRsEKqkKEe 2581 (2706)
T KOG3533|consen 2558 LNLIFGVIIDTFADLRSEKQKKEE 2581 (2706)
T ss_pred HHHHHHhhhhhHHHHHhhhhHHHH
Confidence 999999999999987666555444
No 27
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.24 E-value=0.041 Score=63.26 Aligned_cols=114 Identities=14% Similarity=0.241 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhHHHHHHHHhhcccCHHHHHHHH
Q 005027 548 TLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSY 627 (718)
Q Consensus 548 ~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~egW~~im~~~ 627 (718)
.++..++.++++..++++-||..-.-+|.+-.....+..+. ...++-....++|..+++++|+.+.+-| ++
T Consensus 538 mI~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~---~~~~~m~~~~ds~~~~~l~lf~ftig~~------dl 608 (782)
T KOG3676|consen 538 MIFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKN---VESNPMCNPYDSFSTFLLTLFEFTIGMG------DL 608 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc---ccccccCChhhHHHHHHHHHHHHhhhhh------hh
Confidence 34688999999999999999999888998865442211111 1111112344668999999999876542 22
Q ss_pred HhhhCC---cchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005027 628 KELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 670 (718)
Q Consensus 628 ~~~~g~---~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~ 670 (718)
...... ....+-|++|.++..++++||.||.+-|.|....++.
T Consensus 609 ~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s 654 (782)
T KOG3676|consen 609 EACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQES 654 (782)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Confidence 222222 3368899999999999999999999999999976665
No 28
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.03 E-value=0.015 Score=70.07 Aligned_cols=198 Identities=18% Similarity=0.239 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------ccccccccccchhHHHHHHHHHHHHHHhcCCCCccccchhhH-HHHHH
Q 005027 451 VWQEVEFVFGWIYVLEMALKIYSYG-------FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEW-IRYLL 522 (718)
Q Consensus 451 ~~~~~~~~f~~iF~iE~ilKi~a~G-------~~~y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~~~~~~~~-lr~l~ 522 (718)
.++++=++.++.+.+|-+=+++..+ .+-||.+.||..|.+.+...+++.++.+....... .+.+ +-+--
T Consensus 823 ~~Ew~~~~~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~---~GRvIl~~d~ 899 (1381)
T KOG3614|consen 823 MWEWILFAWIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIY---SGRVILCFDF 899 (1381)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCcccee---cceeeeeehH
Confidence 4455555556667788887766332 15699999999999999988888776554422211 2222 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcC
Q 005027 523 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN 602 (718)
Q Consensus 523 ~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~ 602 (718)
++=.+|++-++...+.+.--+..+.+-++.++.+++++.+.++.|++.--.+-... .+. . +.=|+
T Consensus 900 i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQaIl~P~----e~~----------~-w~l~R 964 (1381)
T KOG3614|consen 900 ILFTLRLLHYFTVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQAILRPD----EPR----------H-WWLFR 964 (1381)
T ss_pred HHHHHHHhhheeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCC----CCc----------h-HHHHH
Confidence 44456667777777777666666677788888888888888888876522111100 000 0 01111
Q ss_pred -ChhHHHHHHHHhhcccCHHHHHHHHH------------------hhh--CCcchhhhHhHHHHHHHHHHHHHHHHHHHH
Q 005027 603 -DYPNGMVTLFNLLVMGNWQVWMQSYK------------------ELT--GTAWTLAYFVSFYLITVLLLLNLVIAFVLE 661 (718)
Q Consensus 603 -~f~~s~~tLf~i~t~egW~~im~~~~------------------~~~--g~~~~~iyFi~f~ll~~~i~lnLfiaviie 661 (718)
.|..-++++| |+-..+-++.+. -.| |++.+.+..+.|.++.+++++||.||+.-.
T Consensus 965 ~i~y~PYlmif----GeV~a~eID~~~~e~~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~ 1040 (1381)
T KOG3614|consen 965 NIFYWPYLMLF----GEVPADEIDTCTCEKSFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSY 1040 (1381)
T ss_pred HHHHHHHHHHh----ccccHhhhhhhcccccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222 222212222211 011 234467888899999999999999999988
Q ss_pred HHHHHHHHh
Q 005027 662 AFFAEMELE 670 (718)
Q Consensus 662 nF~~~~~~~ 670 (718)
.|....+..
T Consensus 1041 tf~~v~~~s 1049 (1381)
T KOG3614|consen 1041 TFGNVQENS 1049 (1381)
T ss_pred HHHHHHHhH
Confidence 887754443
No 29
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.89 E-value=0.043 Score=63.87 Aligned_cols=130 Identities=12% Similarity=0.153 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccccch-------hHHHHHHHHHHHHHHHHHHHHHHHHhh-----c------c----
Q 005027 419 KFGYMISIILIVNLVAVIVETTLDIQESS-------LQSVWQEVEFVFGWIYVLEMALKIYSY-----G------F---- 476 (718)
Q Consensus 419 ~f~~~i~~~Illn~i~l~~~~~~~~~~~~-------~~~~~~~~~~~f~~iF~iE~ilKi~a~-----G------~---- 476 (718)
.|++++.+.++.++++--++-.....+.. ....+.+++.+.-++|+++++++...- + .
T Consensus 79 ~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA 158 (727)
T KOG0498|consen 79 VWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIA 158 (727)
T ss_pred HHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHH
Confidence 35566666665555544333221111110 223556788889999999999988632 0 1
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhcCCCCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 477 ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTF-LSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP 551 (718)
Q Consensus 477 ~~y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~~-~~~~~~lr~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~ 551 (718)
..|++ .|-++|++.++.. ..+..+......+. ........++.+.|+.|+.|+++.++++.........+..
T Consensus 159 ~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~aw 231 (727)
T KOG0498|consen 159 KRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAW 231 (727)
T ss_pred HHHHh-hhHHHHHHHhcCh--hhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 57888 8999999877642 22211111000000 0112355778888888888888888888877766664444
No 30
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=96.82 E-value=0.0079 Score=72.25 Aligned_cols=139 Identities=11% Similarity=0.057 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhHhheeccccccccccccchhhhHHHHHHHHHHHHHh---hcC--------Cc--------c-cccccee
Q 005027 141 ITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGL---YLS--------PI--------A-FNFLPLR 200 (718)
Q Consensus 141 ~~~~if~~e~~~k~~~~~~~~f~~~~~n~~d~~~~i~~~i~~~~~~~---~~~--------~~--------~-~~~~~~r 200 (718)
..+..+.++-...++..|...|+++.||++|++.....++.++.... ... .. . ..+...-
T Consensus 397 ~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~ 476 (743)
T TIGR00870 397 TWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAFAL 476 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHH
Confidence 34444555555556666777899999999998665544443322111 000 00 0 0011222
Q ss_pred eeechhhHHHhhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccc----------------Ccccc
Q 005027 201 IAPYIRVVFFILNIRQLRDTLFVLAGMLG-TYLNVLALGLLFLLFSSWLAYVIFEDTVQ----------------GNMVF 263 (718)
Q Consensus 201 ~~R~lR~l~li~~~~~~r~~~~~l~~~l~-~i~~v~~l~~l~~~~fAi~g~~lF~~~~~----------------~~~~F 263 (718)
++..+|.+.+++.++.+-....++.+++. .++..+++++++++=||+-..++|+...+ ....|
T Consensus 477 ~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f 556 (743)
T TIGR00870 477 VLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGNAY 556 (743)
T ss_pred HHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccc
Confidence 34556666666666777677788888888 99999999999999999999999974211 11569
Q ss_pred ccHHHHHHHHHHHHhc
Q 005027 264 TSFGTTLYQMFVLFTT 279 (718)
Q Consensus 264 ~~~~~s~~~lf~l~Tt 279 (718)
.++..++.++|..+=.
T Consensus 557 ~~~~~s~~~lf~~~~G 572 (743)
T TIGR00870 557 STLFETSQELFWAIIG 572 (743)
T ss_pred cCHHHHHHHHHHHHcC
Confidence 9999999999976544
No 31
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=96.61 E-value=0.038 Score=67.05 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhHhhee--c---------c----ccccccccccchhhhHHHHHHHHHHHHHhhcC-Cccccccceee
Q 005027 138 YEGITLVILIIHTFFPITY--E---------G----SPIFWKSTYTRLKVLCLLILVADFLVYGLYLS-PIAFNFLPLRI 201 (718)
Q Consensus 138 ~E~~~~~if~~e~~~k~~~--~---------~----~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~-~~~~~~~~~r~ 201 (718)
+|.++-++|.+|+++++.. . . .+.|+| .|.++|++.++..-+ +.++.... .....+..+|+
T Consensus 97 ~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~~f~~Dlis~lP~~~--i~~~~~~~~~~~~~~~~l~l 173 (823)
T PLN03192 97 ADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-TWFLMDVASTIPFQA--LAYLITGTVKLNLSYSLLGL 173 (823)
T ss_pred HHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-HhHHHHHHHHhHHHH--HHHHhcCCccchHHHHHHHH
Confidence 4899999999999999652 1 1 123664 477889776665532 22221100 00011122333
Q ss_pred eechhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccCc-------------cccccHH
Q 005027 202 APYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT-VQGN-------------MVFTSFG 267 (718)
Q Consensus 202 ~R~lR~l~li~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~-~~~~-------------~~F~~~~ 267 (718)
+|++|..|+.+....+.+.++.- ...-.+..++++++++.-++|.+.+.+-... .++. +.+..+.
T Consensus 174 lrl~Rl~ri~~~~~~le~~~~~~-~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi 252 (823)
T PLN03192 174 LRFWRLRRVKQLFTRLEKDIRFS-YFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYI 252 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHH
Confidence 33333333332223332222110 0111233333333333444444443332211 1111 1122355
Q ss_pred HHHHHHHHHHhcCCCCcchHhhhhcch
Q 005027 268 TTLYQMFVLFTTSNNPDVWIPAYKASR 294 (718)
Q Consensus 268 ~s~~~lf~l~TtenwpdVm~pay~~~~ 294 (718)
.|++...+.+||-|+.|+. |.....+
T Consensus 253 ~slYwai~TmtTVGYGDi~-p~t~~E~ 278 (823)
T PLN03192 253 SAIYWSITTMTTVGYGDLH-AVNTIEM 278 (823)
T ss_pred HHHHHHHHHHhhccCCCcC-CCccchH
Confidence 6899999999999999984 5444444
No 32
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.37 E-value=0.14 Score=59.34 Aligned_cols=130 Identities=14% Similarity=0.182 Sum_probs=86.5
Q ss_pred HHHhhHhheeccccccccccccchhhhHHHHHHHHHHHHHhhc---CCcc-------cc------------ccceeeeec
Q 005027 147 IIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL---SPIA-------FN------------FLPLRIAPY 204 (718)
Q Consensus 147 ~~e~~~k~~~~~~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~---~~~~-------~~------------~~~~r~~R~ 204 (718)
..+=+-.++..|.+.|+++.||++|++...+.+..++.-.... .... .| +.+=-++-.
T Consensus 398 iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAiA~V~S~ 477 (822)
T KOG3609|consen 398 IWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAIANVLSF 477 (822)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHHHHHHHH
Confidence 3444556677899999999999999999998888776643210 0000 00 111224557
Q ss_pred hhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----c--cC-----ccccccHHHHHHH
Q 005027 205 IRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT-----V--QG-----NMVFTSFGTTLYQ 272 (718)
Q Consensus 205 lR~l~li~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~-----~--~~-----~~~F~~~~~s~~~ 272 (718)
+|.+-+++..+.+-.+--++.+.+..+..-++.+.++++-|++=-.|++.-- . ++ ...|.++..|+.+
T Consensus 478 lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~~fsti~eS~~t 557 (822)
T KOG3609|consen 478 LKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTDSFSTIGESSKT 557 (822)
T ss_pred HHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccccccccHHHHHHH
Confidence 7778888777777777777888888888888887777777777666676510 0 11 1258888888766
Q ss_pred HHHH
Q 005027 273 MFVL 276 (718)
Q Consensus 273 lf~l 276 (718)
||=-
T Consensus 558 LFWs 561 (822)
T KOG3609|consen 558 LFWS 561 (822)
T ss_pred HHHH
Confidence 6543
No 33
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.82 E-value=0.029 Score=61.37 Aligned_cols=73 Identities=18% Similarity=0.341 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-cccccccchhHHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHH
Q 005027 452 WQEVEFVFGWIYVLEMALKIYSYGFEN-YWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLI 530 (718)
Q Consensus 452 ~~~~~~~f~~iF~iE~ilKi~a~G~~~-y~~~~wn~fD~iivi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~l 530 (718)
-+.++..|.++|.+-+.+|.+|..-+- ||-.-..+.|++.+..+++.+. -+..| ..+|.||.+
T Consensus 164 tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiy------------l~r~w----lglrflral 227 (1103)
T KOG1420|consen 164 TQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIY------------LNRSW----LGLRFLRAL 227 (1103)
T ss_pred HHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEE------------eccch----HHHHHHHHH
Confidence 357899999999999999999876332 3344455667665555444321 12222 336666666
Q ss_pred HHHHHHHHHH
Q 005027 531 RLLMHVQQYR 540 (718)
Q Consensus 531 rli~~~~~lr 540 (718)
|++...+-++
T Consensus 228 rlmtvpdilq 237 (1103)
T KOG1420|consen 228 RLMTVPDILQ 237 (1103)
T ss_pred HhccHHHHHH
Confidence 6666555444
No 34
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.24 E-value=0.56 Score=39.94 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=55.2
Q ss_pred HHHHHhhhhcc-cCccccCHHHHHHHHHH-hhhhccCCCCCh-HHHHHHHHHhhccCccccchhHHHHHHHHHhh
Q 005027 314 TLGKAFNLIDN-YNVGFLNKEQCIKLFEE-LNKYRTLPNISR-EEFELIFDELDDTHDFKINLDEFADLCNAIAL 385 (718)
Q Consensus 314 ~l~~af~~l~~-~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~-~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~~ 385 (718)
.++.+|+..+. ++.+.++.+....+++. +. ..+++ ++.+.++..+|.++++.++-+||..+...++.
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 46779999998 88999999988888876 52 23566 88999999999999999999999877765544
No 35
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=91.87 E-value=0.42 Score=37.81 Aligned_cols=64 Identities=30% Similarity=0.484 Sum_probs=48.3
Q ss_pred HHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHH
Q 005027 315 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 379 (718)
Q Consensus 315 l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~ 379 (718)
++.+|..++.++.|.++.+.....+..+..... +....+..+.++...|.++++.++.+||.+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 456899999999999999988888877632211 1222345556699999999999999999865
No 36
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.67 E-value=8.1 Score=42.56 Aligned_cols=102 Identities=8% Similarity=0.114 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccc
Q 005027 519 RYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLL 598 (718)
Q Consensus 519 r~l~~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~ 598 (718)
+.++.+-.+++..++...+.+.....++. . -+.++.+.....|+++|...+++...
T Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~--l~~~~~~~~l~~~~~~g~~~~~~~f~------------------ 163 (393)
T PRK10537 108 KFLIGYCIVLLVALLIYRRDFDRSSLAAG----T--LFAVISITSLLFYSTFGALYLGDGFS------------------ 163 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHHccccC------------------
Confidence 45666667777777777666655422222 1 12233334456788888887765321
Q ss_pred cCcCChhHHHHHHHHhhcccCHHHHHHHHHhhhC-CcchhhhHhHHHHHHHHHH
Q 005027 599 FNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTG-TAWTLAYFVSFYLITVLLL 651 (718)
Q Consensus 599 ~nF~~f~~s~~tLf~i~t~egW~~im~~~~~~~g-~~~~~iyFi~f~ll~~~i~ 651 (718)
..+.++..|++.-+..+|+-|..++. + +..++++-++++++|..++
T Consensus 164 ~~~~s~~dA~y~svvt~tTvGyGdi~-------p~t~~grl~~i~~ii~Gi~vf 210 (393)
T PRK10537 164 PPIESLSTAFYFSIVTMSTVGYGDIV-------PVSESARLFTISVIILGITVF 210 (393)
T ss_pred cCCCCHHHHHHhhheeeecccCCCCC-------CCCHHHHHHHHHHHHHHHHHH
Confidence 14568888888777777777766652 2 2345566666666555443
No 37
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=90.57 E-value=1.2 Score=37.77 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=54.3
Q ss_pred HHHHHhhhhc-ccCcc-ccCHHHHHHHHHH-hhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHhh
Q 005027 314 TLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 385 (718)
Q Consensus 314 ~l~~af~~l~-~~~~~-~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~~ 385 (718)
.++.||+..+ .++.| .++......+++. +..+. ....++++.+.++..+|.++++.++.++|..+...+..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3677999997 67888 5999888887775 11111 23457788999999999999999999999877765543
No 38
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=89.27 E-value=0.92 Score=42.94 Aligned_cols=65 Identities=28% Similarity=0.478 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHH
Q 005027 311 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 380 (718)
Q Consensus 311 r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~ 380 (718)
.+..++.||++.+.++.|.++.......++.+ -.+.++++.+.++...+.+++|.++.++|.+.+
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-----ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSL-----GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-----cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 35678899999999999999998877777766 467899999999999999999999999998654
No 39
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=88.46 E-value=2.2 Score=33.51 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=49.6
Q ss_pred HHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHh
Q 005027 316 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 384 (718)
Q Consensus 316 ~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~ 384 (718)
+++|..++.++.|.++.+.....+... ..++++.+.++...+.++++.++.+||...+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 357888888888989888777666543 24677889999999999999999999988776654
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=88.12 E-value=4 Score=34.31 Aligned_cols=73 Identities=22% Similarity=0.215 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhcc--cCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHh
Q 005027 312 RRTLGKAFNLIDN--YNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 384 (718)
Q Consensus 312 ~~~l~~af~~l~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~ 384 (718)
...++.+|...+. ++.|.++.+.....++...........++.+.+.++..++.++++.++.++|..++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 3447789999999 789999988877776542110001235678899999999999999999999988776654
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=87.67 E-value=4.1 Score=35.01 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=54.0
Q ss_pred HHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHhh
Q 005027 313 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 385 (718)
Q Consensus 313 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~~ 385 (718)
..+..+|..++.++.|.++.+.....++.. .+++++.+.++...|.++++.++.+||..++..+..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 456779999999999999988877776643 357788999999999999999999999987766543
No 42
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=87.39 E-value=2.3 Score=32.00 Aligned_cols=59 Identities=29% Similarity=0.456 Sum_probs=47.6
Q ss_pred HHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHH
Q 005027 316 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 379 (718)
Q Consensus 316 ~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~ 379 (718)
..+|...+.++.|.++.++....+..+ .+..+......++...+.++++.++.++|...
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSL-----GEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 456777888888889888888777765 35667788888999999999999999998754
No 43
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=85.26 E-value=3.5 Score=35.32 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=53.4
Q ss_pred HHHHHhhhhcc-cC-ccccCHHHHHHHHHH-hhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHhh
Q 005027 314 TLGKAFNLIDN-YN-VGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 385 (718)
Q Consensus 314 ~l~~af~~l~~-~~-~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~~ 385 (718)
.+..+|...+. ++ .|.++.+.....+.. +.... ....++.+.+.++..+|.++++.++.++|..++.....
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~l-g~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFL-KNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHh-hccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 36779999987 76 699999888877664 21100 12456788999999999999999999999887765544
No 44
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=84.75 E-value=4.6 Score=34.38 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=53.4
Q ss_pred HHHHHhhhhc-ccCcc-ccCHHHHHHHHHH-hhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHh
Q 005027 314 TLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 384 (718)
Q Consensus 314 ~l~~af~~l~-~~~~~-~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~ 384 (718)
.++++|+..+ .++.+ .++......+++. +...-. ...++.+.+.++..+|.++++.++.++|..+...++
T Consensus 10 ~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~-~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 10 TLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLD-AQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 4678999997 88899 4999888887764 322111 135678899999999999999999999987765543
No 45
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=82.25 E-value=6.7 Score=33.57 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=50.6
Q ss_pred HHHHhhhhc-ccCccc-cCHHHHHHHHHHh-hhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHh
Q 005027 315 LGKAFNLID-NYNVGF-LNKEQCIKLFEEL-NKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 384 (718)
Q Consensus 315 l~~af~~l~-~~~~~~-~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~ 384 (718)
+..+|+.-+ .++.+. ++.+....++... .... ....++.+.+.+.+.+|.++++.++.+||..+...++
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~-~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFL-SSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhc-ccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 556888887 457774 8988887777552 1111 1233667899999999999999999999988776554
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=81.32 E-value=1.9 Score=28.26 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=23.1
Q ss_pred HHHHHHHHhhccCccccchhHHHHHHH
Q 005027 355 EFELIFDELDDTHDFKINLDEFADLCN 381 (718)
Q Consensus 355 ~~~~l~~~ld~~~~~~~~~~ef~~~~~ 381 (718)
|.+.+++..|.+++|.++.+||.+.+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 356788999999999999999987764
No 47
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=81.06 E-value=2.3 Score=51.35 Aligned_cols=138 Identities=15% Similarity=0.293 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcC
Q 005027 523 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN 602 (718)
Q Consensus 523 ~~R~lR~lrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~~fAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~ 602 (718)
.|-+..++-+..-++.+|.+..++..-.+.+.-..+++.++.|.|.+++.+.|..-.....++... ...=|
T Consensus 4789 fffaahlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~p---------dmkcd 4859 (5019)
T KOG2243|consen 4789 FFFAAHLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEP---------DMKCD 4859 (5019)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCC---------Cccch
Confidence 344445666666677777777777766666666677888899999999999998654432221111 12223
Q ss_pred ChhHHHHHHHHhh----cccCHHHHHHHHHhhhCC---cchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005027 603 DYPNGMVTLFNLL----VMGNWQVWMQSYKELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 674 (718)
Q Consensus 603 ~f~~s~~tLf~i~----t~egW~~im~~~~~~~g~---~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~~~~~~~~~ 674 (718)
+....+ ||.+- .+.|-.+-.+ +..|. .+-.+|=|.|+++..+|++.+.-|.|+++|-+..+..++-+
T Consensus 4860 dmltcy--lfhmyvgvragggigdeie---dpagd~yeiyriifditffffvivillaiiqgliidafgelrdqqeqvk 4933 (5019)
T KOG2243|consen 4860 DMLTCY--LFHMYVGVRAGGGIGDEIE---DPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVK 4933 (5019)
T ss_pred hhHHHH--hhheeeeeecCCccccccc---CCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHHHHHH
Confidence 333222 12221 1222222221 12222 34467778899999999999999999999998776655444
No 48
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.77 E-value=30 Score=38.46 Aligned_cols=66 Identities=23% Similarity=0.544 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH----hhcc---------cccccccccchhHHHHH
Q 005027 428 LIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIY----SYGF---------ENYWRDGQNRFDFLVTW 493 (718)
Q Consensus 428 Illn~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~iF~iE~ilKi~----a~G~---------~~y~~~~wn~fD~iivi 493 (718)
++-|.+.+.+....++-...+-..|..+++.+=++|+++++++.- -.|. +.|+.+.--.+|.+.++
T Consensus 7 vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~li 85 (536)
T KOG0500|consen 7 VLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLI 85 (536)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhc
Confidence 444555555422222223334456778999999999999998765 2343 56777766667766444
No 49
>PTZ00183 centrin; Provisional
Probab=80.64 E-value=6.3 Score=36.78 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=52.0
Q ss_pred HHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHH
Q 005027 313 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 380 (718)
Q Consensus 313 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~ 380 (718)
..+..+|..++.++.|.++...+...+... .+.++..+.+.++..++.++++.++.++|....
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKEL-----GETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 346678999999999999988877776654 356888899999999999999999999997664
No 50
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=80.23 E-value=8.2 Score=43.26 Aligned_cols=75 Identities=17% Similarity=0.302 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHhh--cc------------cccccc
Q 005027 418 TKFGYMISIILIVNLVAVIVETTLDIQESS-LQSVWQEVEFVFGWIYVLEMALKIYSY--GF------------ENYWRD 482 (718)
Q Consensus 418 ~~f~~~i~~~Illn~i~l~~~~~~~~~~~~-~~~~~~~~~~~f~~iF~iE~ilKi~a~--G~------------~~y~~~ 482 (718)
..|+|.|+++.+-.++.+-.... ..+.. ....|..++.+.-+||.++++|.+-.- |+ ..|+++
T Consensus 218 t~WDWvIL~LTFYTAimVPyNva--FKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs 295 (971)
T KOG0501|consen 218 TIWDWVILILTFYTAIMVPYNVA--FKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS 295 (971)
T ss_pred hHHHHHHHHHHHHHHheeeeeee--ecccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH
Confidence 45677766666555443322211 11111 122345567788888999999876521 22 356665
Q ss_pred cccchhHHHHHHH
Q 005027 483 GQNRFDFLVTWVI 495 (718)
Q Consensus 483 ~wn~fD~iivi~~ 495 (718)
|-++|++-.+..
T Consensus 296 -WFvIDLLSCLPY 307 (971)
T KOG0501|consen 296 -WFVIDLLSCLPY 307 (971)
T ss_pred -HHHHHHHhcccH
Confidence 778888765443
No 51
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=80.08 E-value=5.1 Score=30.09 Aligned_cols=49 Identities=29% Similarity=0.461 Sum_probs=37.0
Q ss_pred cccCHHHHHHHHHHhhhhccCCC-CChHHHHHHHHHhhccCccccchhHHHHHHH
Q 005027 328 GFLNKEQCIKLFEELNKYRTLPN-ISREEFELIFDELDDTHDFKINLDEFADLCN 381 (718)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~ 381 (718)
|.++.+.+...+..+ ..+ +++.+.+.++...|.++++.++.+||.....
T Consensus 3 G~i~~~~~~~~l~~~-----g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 3 GKITREEFRRALSKL-----GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SEEEHHHHHHHHHHT-----TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CEECHHHHHHHHHHh-----CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 445565655555433 234 8899999999999999999999999987653
No 52
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=80.01 E-value=9.6 Score=32.36 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=50.7
Q ss_pred HHHHHhhh-hcccCcc-ccCHHHHHHHHHHhh-hhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHhh
Q 005027 314 TLGKAFNL-IDNYNVG-FLNKEQCIKLFEELN-KYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 385 (718)
Q Consensus 314 ~l~~af~~-l~~~~~~-~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~~ 385 (718)
.+..+|+. .+.++.+ .++.+....++.... .+. ....++.+.+.++..+|.++++.++.+||..+...++.
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~-~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFT-KNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhh-cCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 35668887 5565654 888888777776531 111 12456678999999999999999999999877665543
No 53
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=77.80 E-value=6.4 Score=36.93 Aligned_cols=64 Identities=27% Similarity=0.440 Sum_probs=54.5
Q ss_pred HHHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHH
Q 005027 312 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 380 (718)
Q Consensus 312 ~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~ 380 (718)
...+++||...+.++.|+++.+.....+..+ -.+.+.++.+.+....|.++++.++.++|....
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-----g~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSL-----GEKLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-----CCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 3468899999999999999999988888777 456778999999999999999999888876543
No 54
>PTZ00184 calmodulin; Provisional
Probab=77.10 E-value=8.8 Score=35.23 Aligned_cols=63 Identities=24% Similarity=0.413 Sum_probs=51.4
Q ss_pred HHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHH
Q 005027 313 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 380 (718)
Q Consensus 313 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~ 380 (718)
..+..+|...+.++.|.++..+....+..+ .+..+..+.+.++..+|.++++.++.+||....
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-----CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 345678888988889999998887777655 356788889999999999999999999997553
No 55
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=76.73 E-value=7.9 Score=36.33 Aligned_cols=66 Identities=29% Similarity=0.379 Sum_probs=56.4
Q ss_pred HHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHH
Q 005027 313 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 383 (718)
Q Consensus 313 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~ 383 (718)
..++.||...+.++.|.++.......++.+ ....+..+...+.+..|.++++.++.++|..++...
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~l-----g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSL-----GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 346779999999999999988888888777 456788999999999999999999999999887653
No 56
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=75.94 E-value=8.5 Score=28.92 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=31.6
Q ss_pred HHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHH
Q 005027 335 CIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 383 (718)
Q Consensus 335 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~ 383 (718)
...+++.+ +..+++.....+|+.-|.++++.++.+||...+..+
T Consensus 7 vk~lLk~~-----NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 7 VKKLLKMM-----NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHT-----T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHH-----ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 34455554 467888899999999999999999999999887654
No 57
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=75.28 E-value=10 Score=35.67 Aligned_cols=63 Identities=27% Similarity=0.422 Sum_probs=54.8
Q ss_pred HHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHH
Q 005027 313 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 380 (718)
Q Consensus 313 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~ 380 (718)
.-+..||.+.+.+..|-++......+...| -+++++++...+.++.+..+++.++++||....
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeL-----genltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKEL-----GENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHh-----CccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 346779999999989989888888888877 588999999999999999999999999998664
No 58
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=74.92 E-value=8.7 Score=41.47 Aligned_cols=73 Identities=23% Similarity=0.344 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchh
Q 005027 295 CFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLD 374 (718)
Q Consensus 295 ~f~~~l~~~v~~~~~~r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ 374 (718)
.|+.|+.. +...+..-|+.++.+.++-++.+....-++.+ -.++++++.+.+++..|++++..++.+
T Consensus 72 eF~~Y~~~--------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-----gi~l~de~~~k~~e~~d~~g~~~I~~~ 138 (463)
T KOG0036|consen 72 EFKRYLDN--------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-----GIQLSDEKAAKFFEHMDKDGKATIDLE 138 (463)
T ss_pred HHHHHHHH--------hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-----CCccCHHHHHHHHHHhccCCCeeeccH
Confidence 66666643 33445668888999989988887776666665 467999999999999999999999999
Q ss_pred HHHHHH
Q 005027 375 EFADLC 380 (718)
Q Consensus 375 ef~~~~ 380 (718)
||.+..
T Consensus 139 e~rd~~ 144 (463)
T KOG0036|consen 139 EWRDHL 144 (463)
T ss_pred HHHhhh
Confidence 997543
No 59
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.99 E-value=61 Score=36.93 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHhhcc---------cccccccccchhHHHHHH
Q 005027 449 QSVWQEVEFVFGWIYVLEMALK-----IYSYGF---------ENYWRDGQNRFDFLVTWV 494 (718)
Q Consensus 449 ~~~~~~~~~~f~~iF~iE~ilK-----i~a~G~---------~~y~~~~wn~fD~iivi~ 494 (718)
-+.|-+.+++|-+||++++++- ..--|. +.|.++.--.+|++.++.
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLP 319 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILP 319 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhh
Confidence 3567889999999999999852 111132 689988888899886554
No 60
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=72.71 E-value=12 Score=36.75 Aligned_cols=68 Identities=28% Similarity=0.490 Sum_probs=52.6
Q ss_pred HHHHHhhhhcccCccccCHHHHHHHHHHhhhhcc------CCCCChHHHHHHHHHhhccCccccchhHHHHHHH
Q 005027 314 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT------LPNISREEFELIFDELDDTHDFKINLDEFADLCN 381 (718)
Q Consensus 314 ~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~ 381 (718)
.+..+|.+-+.++.|.++...+...++.+..... .+.-.++..+.+|.++|.++|+.++.+||.+.+.
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 3446799999999999999998887776643222 1233456778899999999999999999987664
No 61
>PTZ00184 calmodulin; Provisional
Probab=72.52 E-value=16 Score=33.44 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=51.2
Q ss_pred HHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHH
Q 005027 313 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 382 (718)
Q Consensus 313 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~ 382 (718)
..++..|..++.++.|.++..+....+..+ ....+.++.+.++..++.++++.++.++|...+..
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 346678889999899999998887766554 23455678899999999999999999999866543
No 62
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=71.12 E-value=21 Score=30.19 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=49.4
Q ss_pred HHHHhhhhcc-cC-ccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHh
Q 005027 315 LGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 384 (718)
Q Consensus 315 l~~af~~l~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~ 384 (718)
+.+.|+.-+. ++ .+.++.+.....++...+. ..+.++++.+.+++.+|.++++.++.+||..+...++
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l--g~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTI--GSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 4456666555 45 6788888877766531111 3557889999999999999999999999987765544
No 63
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=69.43 E-value=1 Score=46.03 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=21.5
Q ss_pred chHHHHHHHhhcchhHHHHHHHHH
Q 005027 405 SPFSEKLKAFIRSTKFGYMISIIL 428 (718)
Q Consensus 405 s~~r~~~~~~v~~~~f~~~i~~~I 428 (718)
..+|+.|+++|+|+||+.||+++|
T Consensus 216 ~~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 216 WNLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred HHHHhhheeeecccchhheeeeeC
Confidence 468999999999999999998775
No 64
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=69.40 E-value=24 Score=33.55 Aligned_cols=66 Identities=24% Similarity=0.406 Sum_probs=53.7
Q ss_pred HHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHh
Q 005027 313 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 384 (718)
Q Consensus 313 ~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~ 384 (718)
..+++||.+++.++.|.++.......++.+ --..++.+...++...+. +.+.++-.+|...+....
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~l-----g~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSL-----GFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHc-----CCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 456789999999999999998888877755 234677889999999998 889999999988776643
No 65
>PRK10537 voltage-gated potassium channel; Provisional
Probab=68.82 E-value=19 Score=39.63 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=55.0
Q ss_pred cceeeeechhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccHHHHHHHHHHH
Q 005027 197 LPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVL 276 (718)
Q Consensus 197 ~~~r~~R~lR~l~li~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lf~l 276 (718)
..++++-+++.+.++.+.+..-+.. .+.. .-..++++..+++|+++|...+++.. .+.+.++.++++.-.+.
T Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~--~l~~~~~~~~l~~~~~~g~~~~~~~f--~~~~~s~~dA~y~svvt 179 (393)
T PRK10537 108 KFLIGYCIVLLVALLIYRRDFDRSS----LAAG--TLFAVISITSLLFYSTFGALYLGDGF--SPPIESLSTAFYFSIVT 179 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHH----HHHH--HHHHHHHHHHHHHHHHHHHHHHcccc--CcCCCCHHHHHHhhhee
Confidence 3444444455555554444333331 1111 22333445556688899988887642 35678999999999999
Q ss_pred HhcCCCCcchHhhhhcch
Q 005027 277 FTTSNNPDVWIPAYKASR 294 (718)
Q Consensus 277 ~TtenwpdVm~pay~~~~ 294 (718)
+||.++.|+. |.....+
T Consensus 180 ~tTvGyGdi~-p~t~~gr 196 (393)
T PRK10537 180 MSTVGYGDIV-PVSESAR 196 (393)
T ss_pred eecccCCCCC-CCCHHHH
Confidence 9999999984 6555554
No 66
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=68.11 E-value=10 Score=44.72 Aligned_cols=39 Identities=13% Similarity=0.315 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhHhhe--ec---------cc----cccccccccchhhhHHHH
Q 005027 138 YEGITLVILIIHTFFPIT--YE---------GS----PIFWKSTYTRLKVLCLLI 177 (718)
Q Consensus 138 ~E~~~~~if~~e~~~k~~--~~---------~~----~~f~~~~~n~~d~~~~i~ 177 (718)
++.+.=+.|.+++++++. +. ++ ..|++ .|-++|++.++.
T Consensus 122 ~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP 175 (727)
T KOG0498|consen 122 LDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLP 175 (727)
T ss_pred HHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcC
Confidence 488888889999999865 11 12 22777 788999876654
No 67
>PTZ00183 centrin; Provisional
Probab=67.57 E-value=26 Score=32.54 Aligned_cols=63 Identities=22% Similarity=0.376 Sum_probs=50.7
Q ss_pred HHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHH
Q 005027 314 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 381 (718)
Q Consensus 314 ~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~ 381 (718)
.+..+|..++.++.|.++..++...++.+ ....+..+.+.++...|.++++.++.+||.....
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-----g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSL-----GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 45678999999999999999888777655 1235667888999999999999999999987654
No 68
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=66.26 E-value=28 Score=37.91 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHh
Q 005027 309 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 384 (718)
Q Consensus 309 ~~r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~ 384 (718)
.+.+..+..-|+.++.+..|.++.+.+....+-+.++. ...+++++...+-+.+|-+.||.+|.+||.+.+....
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~-~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM-NGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc-CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 34466788889999999999988877766555554444 3568889999999999999999999999987776544
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=65.08 E-value=7.9 Score=24.32 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.7
Q ss_pred HHHHHHhhccCccccchhHHHHH
Q 005027 357 ELIFDELDDTHDFKINLDEFADL 379 (718)
Q Consensus 357 ~~l~~~ld~~~~~~~~~~ef~~~ 379 (718)
+..|+.+|.+++|.++.+||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45788999999999999999864
No 70
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.46 E-value=21 Score=39.59 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhHhhe--e-----------ccccccccccccchhhhHHHHHHHHHHHHHhhcCCccccccceeee
Q 005027 136 LVYEGITLVILIIHTFFPIT--Y-----------EGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIA 202 (718)
Q Consensus 136 ~~~E~~~~~if~~e~~~k~~--~-----------~~~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~~~~~~r~~ 202 (718)
+.+++++=++|.++++++.. + .-++.|+++..-.+|++.++.. |++.-.. ......+..|..
T Consensus 32 l~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~--D~l~~~~---~~~~~~r~nRll 106 (536)
T KOG0500|consen 32 LPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL--DLLLFKD---GSASLERLNRLL 106 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcch--hHHhhcC---CcchHHHHHHHH
Confidence 66799999999999999854 1 1145577777777776655543 3222211 111122234444
Q ss_pred echhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005027 203 PYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE 254 (718)
Q Consensus 203 R~lR~l~li~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~ 254 (718)
|+.|.+..+.+... .-+.|.+..+..+....+++|=+-|=..|-
T Consensus 107 k~yRl~~F~~rTet--------rT~~Pn~fri~~lv~~~~ilfHWNaClYf~ 150 (536)
T KOG0500|consen 107 KIYRLFEFFDRTET--------RTTYPNAFRISKLVHYCLILFHWNACLYFL 150 (536)
T ss_pred HHHHHHHHHHHhcc--------ccCCchHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 44444444422211 224566666666666666666666655553
No 71
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=62.76 E-value=32 Score=30.79 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHH
Q 005027 310 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 380 (718)
Q Consensus 310 ~r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~ 380 (718)
..+..+..+|..++.++.|.++.+....+. + ...+...+.+++..|.++++.|+.+||.+.+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-------DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-------cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345568889999999999999987755433 1 1224566788999999999999999998776
No 72
>PF14658 EF-hand_9: EF-hand domain
Probab=62.21 E-value=30 Score=27.61 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=46.3
Q ss_pred HhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCc-cccchhHHHHHH
Q 005027 318 AFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHD-FKINLDEFADLC 380 (718)
Q Consensus 318 af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~-~~~~~~ef~~~~ 380 (718)
+|++-+.++.|.+........++.+ ..+...+.+.+.+.+++|+++. +.++.+.|..+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~----~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAV----TGRSPEESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHH----cCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 6777778888888777777777766 2346677899999999999988 999999887553
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=60.77 E-value=11 Score=24.79 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=21.6
Q ss_pred HHHHHHHhhccCccccchhHHHHHHH
Q 005027 356 FELIFDELDDTHDFKINLDEFADLCN 381 (718)
Q Consensus 356 ~~~l~~~ld~~~~~~~~~~ef~~~~~ 381 (718)
.+.+|+..|.++++.++.+|+.+.+.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45688999999999999999988765
No 74
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=60.58 E-value=2.3 Score=47.21 Aligned_cols=133 Identities=13% Similarity=0.224 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhHhheecc-ccccccccccchhhhHHHHHHHHHHHHHhhcCCccccccceeeeechhhHHHhhccHH
Q 005027 138 YEGITLVILIIHTFFPITYEG-SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 216 (718)
Q Consensus 138 ~E~~~~~if~~e~~~k~~~~~-~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~~~~~~r~~R~lR~l~li~~~~~ 216 (718)
+|+.+-+.|.+-..+|+++.. .-.||-.-..++|++.+-.+++.+.+. +..--+|.||.+|+++. |.
T Consensus 167 idlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl~-----------r~wlglrflralrlmtv-pd 234 (1103)
T KOG1420|consen 167 IDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLN-----------RSWLGLRFLRALRLMTV-PD 234 (1103)
T ss_pred hhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEec-----------cchHHHHHHHHHHhccH-HH
Confidence 466777777777777766433 333666666667766655554432111 11122566777777733 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccccCccccc-----cHHHHHHHHHHHHhcCCCCcch
Q 005027 217 LRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAY----VIFEDTVQGNMVFT-----SFGTTLYQMFVLFTTSNNPDVW 286 (718)
Q Consensus 217 ~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~----~lF~~~~~~~~~F~-----~~~~s~~~lf~l~TtenwpdVm 286 (718)
+-.-+.. +++-..| -+.-++-+|+..++-. .+.....+.-.+|+ ++++..+-+.+.++|.++.||.
T Consensus 235 ilqylni-lktsssi---rl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvy 309 (1103)
T KOG1420|consen 235 ILQYLNI-LKTSSSI---RLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVY 309 (1103)
T ss_pred HHHHHHH-Hhccchh---hHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeecccccee
Confidence 3333322 2222222 2222222222222221 22222211112233 3456666777888999999984
No 75
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=57.72 E-value=39 Score=42.10 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=56.3
Q ss_pred HHHHHHHhhHhheeccc-------cccccccccchhhhHHHHHHHHHHHHHhhcCCcccccccee----eeechhhHHHh
Q 005027 143 LVILIIHTFFPITYEGS-------PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLR----IAPYIRVVFFI 211 (718)
Q Consensus 143 ~~if~~e~~~k~~~~~~-------~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~~~~~~r----~~R~lR~l~li 211 (718)
+..+++|-+=++...+. +.||.+.||+.|.+.+...++-.+.-+... ......+++- ++=.+|.+-.+
T Consensus 832 iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~-~~~~~GRvIl~~d~i~~t~rLl~~f 910 (1381)
T KOG3614|consen 832 IFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPI-DSIYSGRVILCFDFILFTLRLLHYF 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCc-cceecceeeeeehHHHHHHHHhhhe
Confidence 33445676655553322 349999999999988887776554432210 0000111111 12245555555
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 212 LNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSS 246 (718)
Q Consensus 212 ~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fA 246 (718)
..++.+-.-+..+.+.++.+...++++.+.++-|+
T Consensus 911 ~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfG 945 (1381)
T KOG3614|consen 911 TVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFG 945 (1381)
T ss_pred eeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666666667777776665555544444444
No 76
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=51.48 E-value=1e+02 Score=38.59 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=41.6
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005027 209 FFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT 256 (718)
Q Consensus 209 ~li~~~~~~r~~~~~l~~~l~~i~~v~~l~~l~~~~fAi~g~~lF~~~ 256 (718)
=++.+-..+..+++++-++-..|.--++|-++.+++|+|+|+..|++.
T Consensus 2400 DliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdD 2447 (2706)
T KOG3533|consen 2400 DLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDD 2447 (2706)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345556788889999999999999999999999999999999999974
No 77
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=49.46 E-value=1.4e+02 Score=32.25 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=61.9
Q ss_pred HHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHH--HhccccccCCCCCCCCcccCccccccCcCChhHHHHHHHHh
Q 005027 539 YRGFVATFLTL-IPSLMP-YLGTIFCVQCIYCSLGVQ--IFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNL 614 (718)
Q Consensus 539 lr~l~~tl~~~-~~~l~~-~~~l~~~~~~~fAi~G~~--lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i 614 (718)
++.+++|++.. .+.++- +++..++.+++||.+-+. .-.|.....++..+.+. +-.+.++|..|++--.+.
T Consensus 22 ~~D~~~tlv~~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~------Cv~~~~~f~~aF~FSveT 95 (336)
T PF01007_consen 22 LRDLYTTLVDMSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTP------CVSNVNSFTSAFLFSVET 95 (336)
T ss_dssp CHTHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-T------SECT-TTHHHHHHHHHHH
T ss_pred HHHHHhhccCCCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCC------ceecccchhhheeEEEEE
Confidence 45677777755 332222 222334455566644322 22332222111111111 235678999999988888
Q ss_pred hcccCHHHHHHHHHhhhCCcchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 615 LVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAE 666 (718)
Q Consensus 615 ~t~egW~~im~~~~~~~g~~~~~iyFi~f~ll~~~i~lnLfiaviienF~~~ 666 (718)
.|+=|+... ..++.-..+.+.++.-.+.+.++..+.+|++.-.|+.-
T Consensus 96 ~tTIGYG~~-----~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 96 QTTIGYGSR-----YPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp HTT---SSS-----EB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred EEEeccCCc-----ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 888775431 12222334566677777888888888888887777653
No 78
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=47.67 E-value=80 Score=26.53 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=41.8
Q ss_pred ccccCHHHHHHHHHH-hhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHhh
Q 005027 327 VGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 385 (718)
Q Consensus 327 ~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~~ 385 (718)
.+.++.+....++.. +.... ....++.+.+.++..+|.++++.++.++|......+..
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~-t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFL-KKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhh-ccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 567888887777753 21111 02244788999999999999999999999887766543
No 79
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=47.65 E-value=3.9e+02 Score=28.99 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=14.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 636 TLAYFVSFYLITVLLLLNLVIAFVLEAFFAE 666 (718)
Q Consensus 636 ~~iyFi~f~ll~~~i~lnLfiaviienF~~~ 666 (718)
+.++-.++.++....++-+.+|+ +|-..+.
T Consensus 177 ~~~~~~~~~l~~~~~~~~~via~-~D~~~qr 206 (349)
T PRK12721 177 PVVSTLIFWLWGGLLACYLVFGI-LDYSFQR 206 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33444445555555444455554 3444443
No 80
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=46.64 E-value=3.3e+02 Score=29.39 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=10.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHH
Q 005027 637 LAYFVSFYLITVLLLLNLVIAFV 659 (718)
Q Consensus 637 ~iyFi~f~ll~~~i~lnLfiavi 659 (718)
.++-.++.++....+.-+++|++
T Consensus 177 ~~~~~~~~l~~~~~~~~~via~~ 199 (342)
T TIGR01404 177 IVGELLKLLILVCLGFFLVVGLA 199 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445543
No 81
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=46.46 E-value=82 Score=27.62 Aligned_cols=61 Identities=23% Similarity=0.371 Sum_probs=45.2
Q ss_pred HHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHH
Q 005027 315 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 383 (718)
Q Consensus 315 l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~ 383 (718)
...-|+.++. +.|.++.++...++. ..+++.+....+|+..|.+++|.++.+||.-....+
T Consensus 12 y~~~F~~l~~-~~g~isg~~a~~~f~-------~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 12 YDQIFQSLDP-QDGKISGDQAREFFM-------KSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHCTSS-STTEEEHHHHHHHHH-------HTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCeEeHHHHHHHHH-------HcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3446777764 467787777666665 357888999999999999999999999997544443
No 82
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=44.98 E-value=23 Score=41.72 Aligned_cols=135 Identities=10% Similarity=0.161 Sum_probs=93.6
Q ss_pred eccccccccccccchhhhHHHHHHHHHHHHHhhcCCcccc-ccceee-eechhhHHHhhccHHHHHHHHHHHHHHHHHHH
Q 005027 156 YEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFN-FLPLRI-APYIRVVFFILNIRQLRDTLFVLAGMLGTYLN 233 (718)
Q Consensus 156 ~~~~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~~-~~~~r~-~R~lR~l~li~~~~~~r~~~~~l~~~l~~i~~ 233 (718)
+...+.|+-+.-|+++.++....++....+.........+ ..++-+ +-..+.+.++.+.|..-.-+..+...+++++.
T Consensus 585 fqqk~~Y~~~i~Nimew~iyts~li~v~~~~~~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk 664 (929)
T KOG0510|consen 585 FQQKRHYFMDIENIMEWFIYTSALITVYPLFFEITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLK 664 (929)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhhhheeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHH
Confidence 3456779999999999887776666433321100000000 011111 23466777888888777777777778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCccccccHHHHHHHHHHHHhcCC-CC-cchHhhhhcch
Q 005027 234 VLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSN-NP-DVWIPAYKASR 294 (718)
Q Consensus 234 v~~l~~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~Tten-wp-dVm~pay~~~~ 294 (718)
.+.+..++++-|++--+.+|+...+ |.|.+-|++.-|+.+-.|+ ++ +...+.|..++
T Consensus 665 ~f~vfs~lliaF~lsFYVll~~~~e----Fs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~ 723 (929)
T KOG0510|consen 665 SFMVFSILLIAFGLSFYVLLNKSSE----FSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNS 723 (929)
T ss_pred HHHHHHHHHHHhhhhheeeecCCCC----cCCCcchhhhhHHHhhcccccccccccchhhcCc
Confidence 9999999999999999999998643 9999999999999988876 44 44555666555
No 83
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=43.89 E-value=55 Score=32.04 Aligned_cols=66 Identities=27% Similarity=0.427 Sum_probs=47.2
Q ss_pred HHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHH----HHHHHhhccCccccchhHHHHHHH
Q 005027 314 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFE----LIFDELDDTHDFKINLDEFADLCN 381 (718)
Q Consensus 314 ~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~l~~~ld~~~~~~~~~~ef~~~~~ 381 (718)
.++=||.+.+..+.|.++.++....+..+-.-.. . .+++..+ .++.+.|.++||.++.+||.+...
T Consensus 105 Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~-~-~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 105 KLRFAFRVYDLDGDGFISREELKQILRMMVGEND-D-MSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCC-c-chHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4555999999999999999988877766632111 1 1344444 456678999999999999987653
No 84
>PLN02964 phosphatidylserine decarboxylase
Probab=42.77 E-value=58 Score=38.17 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=49.9
Q ss_pred HHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHH
Q 005027 315 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 382 (718)
Q Consensus 315 l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~ 382 (718)
+.++|...+.++.+.++.+.+..++..+ ....++++.+..|+..|.++++.++.+|+.++...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~l-----g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAF-----GNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHh-----ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3446677788888999988888777755 23456778999999999999999999999877644
No 85
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=41.48 E-value=80 Score=26.84 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=21.6
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 635 WTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 665 (718)
Q Consensus 635 ~~~iyFi~f~ll~~~i~lnLfiaviienF~~ 665 (718)
.+.+-|.+|..++.|++|=++.+-|.+.=..
T Consensus 13 l~K~~~FA~L~i~~FiILLIi~~~IW~~~r~ 43 (121)
T PF10669_consen 13 LTKIMFFAFLFIVVFIILLIITKSIWHDSRQ 43 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3456666777777887887778888765444
No 86
>PRK08156 type III secretion system protein SpaS; Validated
Probab=41.26 E-value=3.6e+02 Score=29.41 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 642 SFYLITVLLLLNLVIAFVLEAFFAE 666 (718)
Q Consensus 642 ~f~ll~~~i~lnLfiaviienF~~~ 666 (718)
++.++....+.=+.+|++ |-..+.
T Consensus 178 ~~~l~~~~~~~~lvia~~-D~~~Qr 201 (361)
T PRK08156 178 LVKLVLTFLACALIVLIL-DFIAEY 201 (361)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333333333333444443 444443
No 87
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=38.11 E-value=1.2e+02 Score=33.26 Aligned_cols=63 Identities=25% Similarity=0.391 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHH
Q 005027 311 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 377 (718)
Q Consensus 311 r~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~ 377 (718)
|..-.+.-|+.++.++.+.++..+..+.+..+ ..|+...+-.+.+++..|.+.++.+|..||.
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l----~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~ 74 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKL----DHPKPNYEAAKMLFSAMDANRDGRVDYSEFK 74 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhc----CCCCCchHHHHHHHHhcccCcCCcccHHHHH
Confidence 33334556777777777777766655444433 1234444445555555555555555555554
No 88
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=37.83 E-value=2.2e+02 Score=24.35 Aligned_cols=58 Identities=22% Similarity=0.419 Sum_probs=40.9
Q ss_pred ccccCHHHHHHHHHH-hhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHHHhh
Q 005027 327 VGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 385 (718)
Q Consensus 327 ~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~~~~ 385 (718)
.+.++......+++. +..+... .-+++..+.+++.+|.++|+.++-+||..+...+..
T Consensus 21 ~~tLsk~Elk~Ll~~Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 21 KNYLNRDDLQKLMEKEFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred CCcCCHHHHHHHHHHHhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 346777777766543 3333333 236678888999999999999999999877665443
No 89
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.08 E-value=4.1e+02 Score=30.67 Aligned_cols=135 Identities=18% Similarity=0.159 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhhHh-----hee---------ccccccccccccchhhhHHHHHHHHHHHHHhhcCCccccccceee
Q 005027 136 LVYEGITLVILIIHTFFP-----ITY---------EGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRI 201 (718)
Q Consensus 136 ~~~E~~~~~if~~e~~~k-----~~~---------~~~~~f~~~~~n~~d~~~~i~~~i~~~~~~~~~~~~~~~~~~~r~ 201 (718)
+++|++|=+|+.+++.+- +.. ...+.|.++..-.+|++-++.. | ++++.+ | ....+
T Consensus 264 li~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPl--d-llY~~~-G----~~p~w-- 333 (815)
T KOG0499|consen 264 LIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPL--D-LLYLFF-G----FNPMW-- 333 (815)
T ss_pred hhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhH--H-HHHHHh-c----cchhh--
Confidence 678999999999998753 111 1235588888878886555443 2 233322 0 11233
Q ss_pred eechhhHHHhh---ccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccc-----ccCccccccHHHHH
Q 005027 202 APYIRVVFFIL---NIRQLRDTLFV--LAGMLGTYLNVLALGLLFLLF-SSWLAYVIFEDT-----VQGNMVFTSFGTTL 270 (718)
Q Consensus 202 ~R~lR~l~li~---~~~~~r~~~~~--l~~~l~~i~~v~~l~~l~~~~-fAi~g~~lF~~~-----~~~~~~F~~~~~s~ 270 (718)
|+-|.++.-+ ..+.+-+++.. +.+.+.+...++..+=+--.+ |..-++|-+|-+ .+|..|-.=++-
T Consensus 334 -R~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyf-- 410 (815)
T KOG0499|consen 334 -RANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYF-- 410 (815)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhh--
Confidence 4445444332 23344333332 234444444444333332233 455567777743 123333333322
Q ss_pred HHHHHHHhcCCCCc
Q 005027 271 YQMFVLFTTSNNPD 284 (718)
Q Consensus 271 ~~lf~l~Ttenwpd 284 (718)
+.=.+.|.-|.|+
T Consensus 411 -a~kt~~tiG~~P~ 423 (815)
T KOG0499|consen 411 -AVKTLITIGGLPE 423 (815)
T ss_pred -HHHHHHHhcCCCC
Confidence 3334456667765
No 90
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=33.48 E-value=1.7e+02 Score=27.64 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=50.1
Q ss_pred HHHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHH
Q 005027 312 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 380 (718)
Q Consensus 312 ~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~ 380 (718)
...+..||...+.++.|.++.+....++... -.+.++++.+.++...-.+..+.++..+|....
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-----gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTM-----GDRFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHh-----cccCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 4567889999999999999888777766654 367889999999988777777778777766543
No 91
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=32.17 E-value=1.4e+02 Score=29.76 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 005027 418 TKFGYMISIILIVNLVAVIVE 438 (718)
Q Consensus 418 ~~f~~~i~~~Illn~i~l~~~ 438 (718)
-.|+-+|.+++.+-..+-+..
T Consensus 177 i~FD~FI~ccv~L~~lt~~Fr 197 (221)
T KOG0037|consen 177 IDFDDFIQCCVVLQRLTEAFR 197 (221)
T ss_pred eeHHHHHHHHHHHHHHHHHHH
Confidence 357888888888877665553
No 92
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.59 E-value=7.1e+02 Score=27.09 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 005027 560 IFCVQCIYCSLGVQIFGGIV 579 (718)
Q Consensus 560 ~~~~~~~fAi~G~~lF~g~~ 579 (718)
+++...+.++++--+-+|-.
T Consensus 96 ~~~~~~v~gi~~~~~q~g~~ 115 (363)
T COG1377 96 FLLVLLVVGLLANILQVGFL 115 (363)
T ss_pred HHHHHHHHHHHHHHHHhCcc
Confidence 33334455666555555543
No 93
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=30.94 E-value=1.5e+02 Score=24.05 Aligned_cols=45 Identities=33% Similarity=0.391 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcccccCccccccHHHHHHHHHHHHhcCCCCcchHhh
Q 005027 239 LLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPA 289 (718)
Q Consensus 239 ~l~~~~fAi~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~TtenwpdVm~pa 289 (718)
+++++.+|.+...+ ++ + ..-.++.++++--+..+||-|+.|+. |.
T Consensus 3 ~~~~l~~~~~~~~~-~~---~-~~~~~~~da~yfs~~t~tTvGyGDi~-p~ 47 (79)
T PF07885_consen 3 LLLVLAFGAIFFYI-SE---G-SEKWSFIDALYFSFVTITTVGYGDIV-PQ 47 (79)
T ss_dssp HHHHHHHHHHHHHH-TT---S-SSTTSHHHHHHHHHHHHTT---SSSS-TS
T ss_pred EEeeeHHHHHHHHH-HH---h-cccCCHHHHHHHHHHHHhcccCCCcc-CC
Confidence 44455556555555 11 1 33578899999999999999999984 44
No 94
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=30.44 E-value=1.1e+02 Score=22.14 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 644 YLITVLLLLNLVIAFVLEAFFAEMEL 669 (718)
Q Consensus 644 ~ll~~~i~lnLfiaviienF~~~~~~ 669 (718)
.+++.++++.+|.-+=+.-|+...+-
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqI 32 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQI 32 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777766666666665443
No 95
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=29.44 E-value=2.2e+02 Score=26.91 Aligned_cols=28 Identities=36% Similarity=0.656 Sum_probs=21.6
Q ss_pred HHHHhhhhcccCccccCHHHHHHHHHHh
Q 005027 315 LGKAFNLIDNYNVGFLNKEQCIKLFEEL 342 (718)
Q Consensus 315 l~~af~~l~~~~~~~~~~~~~~~~~~~l 342 (718)
+..||++++.++.|+++++.....+..+
T Consensus 34 fKEAF~~mDqnrDG~IdkeDL~d~~aSl 61 (171)
T KOG0031|consen 34 FKEAFNLMDQNRDGFIDKEDLRDMLASL 61 (171)
T ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHc
Confidence 4569999999999999887766555554
No 96
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.20 E-value=5e+02 Score=28.23 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=11.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 638 AYFVSFYLITVLLLLNLVIAFVLEAFFA 665 (718)
Q Consensus 638 iyFi~f~ll~~~i~lnLfiaviienF~~ 665 (718)
+.-..+.++..+.+.-+.+|++ |-..+
T Consensus 188 ~~~~~~~l~~~~~~~~~via~~-D~~~q 214 (358)
T PRK13109 188 ILTVAIRLVSAVAIATIVLVAL-DLVWA 214 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3334444444444444444443 43333
No 97
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=28.41 E-value=1.2e+02 Score=33.39 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=40.9
Q ss_pred HHHHHHHhhhhcccCccccCHHHHHHHHHHhhhhccCCCCChHHHHHHHHHhhccCccccchhHHHHHHHH
Q 005027 312 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 382 (718)
Q Consensus 312 ~~~l~~af~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ld~~~~~~~~~~ef~~~~~~ 382 (718)
+..++.+|...+.++.|.++.+.+.. .+.+|+.+|.+++|.++.+||...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34467788888888888888766421 356889999999999999999877654
No 98
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=27.89 E-value=4.9e+02 Score=30.61 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=10.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 638 AYFVSFYLITVLLLLNLVIAFVLEAFFA 665 (718)
Q Consensus 638 iyFi~f~ll~~~i~lnLfiaviienF~~ 665 (718)
++-..+.++....+.-+.+|++ |-.-+
T Consensus 442 ~~~~~~~l~~~~~~~~~via~~-D~~~q 468 (609)
T PRK12772 442 LKSLVISIFFRITLIMIIIAVA-DYVYQ 468 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3334444444433333444443 44433
No 99
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=27.60 E-value=3.3e+02 Score=21.96 Aligned_cols=55 Identities=7% Similarity=0.149 Sum_probs=34.5
Q ss_pred CChhHHHHHHHHhhcccCHHHHHHHHHhhhCC-cchhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 602 NDYPNGMVTLFNLLVMGNWQVWMQSYKELTGT-AWTLAYFVSFYLITVLLLLNLVIAFVLEAFF 664 (718)
Q Consensus 602 ~~f~~s~~tLf~i~t~egW~~im~~~~~~~g~-~~~~iyFi~f~ll~~~i~lnLfiaviienF~ 664 (718)
.++..|+.--+..+|+-|..|+. +. .+.+++- ....+.++.++.++++.+.+-+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~-------p~t~~gr~~~-~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIV-------PQTPAGRIFT-IIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSS-------TSSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCcc-------CCccchHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888777777777765553 22 3444444 55666666688888888877654
No 100
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=27.33 E-value=5.6e+02 Score=27.73 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=7.8
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 005027 640 FVSFYLITVLLLLNLVIAF 658 (718)
Q Consensus 640 Fi~f~ll~~~i~lnLfiav 658 (718)
-.++.++..+.+.-+.+|+
T Consensus 181 ~~~~~l~~~~~~~~~via~ 199 (347)
T TIGR00328 181 DIAKSLLILVLLLLLVIAV 199 (347)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444333344444
No 101
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=26.64 E-value=5.6e+02 Score=27.86 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=10.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH
Q 005027 638 AYFVSFYLITVLLLLNLVIAFV 659 (718)
Q Consensus 638 iyFi~f~ll~~~i~lnLfiavi 659 (718)
++-.++.++..+.++-+.+|++
T Consensus 186 ~~~~~~~l~~~~~~~~~via~~ 207 (359)
T PRK05702 186 ALDLVLKLLLLVVLALLVIAAI 207 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555543
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=26.40 E-value=67 Score=19.05 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=18.3
Q ss_pred HHHHHHhhccCccccchhHHHHHH
Q 005027 357 ELIFDELDDTHDFKINLDEFADLC 380 (718)
Q Consensus 357 ~~l~~~ld~~~~~~~~~~ef~~~~ 380 (718)
+.+++..|.++++.++.++|....
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 456777788888889888887654
No 103
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=26.14 E-value=1.6e+02 Score=27.20 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 005027 648 VLLLLNLVIAFVLEAFFAEMELESS 672 (718)
Q Consensus 648 ~~i~lnLfiaviienF~~~~~~~~~ 672 (718)
++.+||.|+|++.-.|....+..++
T Consensus 65 giyLLn~flaFLTPKfdms~eq~e~ 89 (180)
T COG5249 65 GIYLLNAFLAFLTPKFDMSFEQIED 89 (180)
T ss_pred HHHHHHHHHHHhCCCCcccHhhhcc
Confidence 3458999999999888877554443
No 104
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.81 E-value=6.8e+02 Score=27.56 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=4.2
Q ss_pred HHHHHHHhccc
Q 005027 568 CSLGVQIFGGI 578 (718)
Q Consensus 568 Ai~G~~lF~g~ 578 (718)
++++--+-+|-
T Consensus 104 ~i~~~~~Q~G~ 114 (386)
T PRK12468 104 ALAVPMLLGGV 114 (386)
T ss_pred HHHHHHHhhCc
Confidence 44433333343
No 105
>PRK09108 type III secretion system protein HrcU; Validated
Probab=22.50 E-value=7.5e+02 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=11.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHH
Q 005027 637 LAYFVSFYLITVLLLLNLVIAFV 659 (718)
Q Consensus 637 ~iyFi~f~ll~~~i~lnLfiavi 659 (718)
.++-..+.++..+.+.-+++|++
T Consensus 180 ~~~~~~~~l~~~~~~~~~via~~ 202 (353)
T PRK09108 180 ILWTVLMKLLAVAAGVFLLVGAA 202 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555544444555544
No 106
>PRK06298 type III secretion system protein; Validated
Probab=20.85 E-value=1.1e+03 Score=25.62 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=13.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005027 637 LAYFVSFYLITVLLLLNLVIAFVLEAFFAEM 667 (718)
Q Consensus 637 ~iyFi~f~ll~~~i~lnLfiaviienF~~~~ 667 (718)
.++...+.++....+.=+.+|+ +|-..+.+
T Consensus 179 ~~~~~~~~l~~~~~~~~~via~-~D~~~qr~ 208 (356)
T PRK06298 179 IFKEILYKAVTSIGIFFLVVAV-LDLVYQRH 208 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3444444444444444444444 34444433
Done!