Query 005028
Match_columns 718
No_of_seqs 223 out of 1718
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:12:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gfh_A DNA topoisomerase 2; to 100.0 2E-166 8E-171 1504.4 35.0 609 75-714 5-664 (1177)
2 3lnu_A Topoisomerase IV subuni 100.0 1E-110 4E-115 918.3 35.9 386 75-476 22-408 (408)
3 1ei1_A DNA gyrase B, GYRB; ATP 100.0 5E-105 2E-109 875.9 38.2 387 75-472 2-390 (391)
4 1s16_A Topoisomerase IV subuni 100.0 1E-101 4E-106 849.4 39.5 382 75-471 3-387 (390)
5 1kij_A DNA gyrase subunit B; t 100.0 1E-95 4E-100 803.1 34.8 385 76-472 2-389 (390)
6 1pvg_A DNA topoisomerase II; G 100.0 1.7E-96 6E-101 811.8 28.6 361 75-467 10-416 (418)
7 3k9f_C DNA topoisomerase 4 sub 100.0 4.6E-96 2E-100 743.0 18.6 237 472-711 21-261 (268)
8 1zxm_A TOPO IIA ATPase, DNA to 100.0 1.1E-94 3.6E-99 794.2 24.7 361 79-463 3-394 (400)
9 3nuh_B DNA gyrase subunit B; t 100.0 7.7E-94 2.6E-98 766.8 14.8 249 468-718 3-420 (420)
10 3m4i_A DNA gyrase subunit B; G 100.0 8.7E-92 3E-96 705.0 13.6 228 488-718 9-242 (242)
11 3cwv_A DNA gyrase, B subunit, 100.0 7.1E-87 2.4E-91 726.8 28.6 344 84-460 8-362 (369)
12 2xkj_E Topoisomerase IV; type 100.0 2.4E-86 8.2E-91 763.2 18.1 256 453-713 1-257 (767)
13 3l4j_A DNA topoisomerase 2; to 100.0 1.8E-76 6.3E-81 674.1 15.6 229 482-714 4-244 (757)
14 3qx3_A DNA topoisomerase 2-bet 100.0 8.6E-76 2.9E-80 669.2 10.6 221 482-708 34-267 (803)
15 2xcs_B DNA gyrase subunit B, D 100.0 1.9E-72 6.5E-77 641.0 13.6 197 481-712 3-199 (692)
16 4duh_A DNA gyrase subunit B; s 100.0 1.6E-66 5.4E-71 528.8 16.9 217 75-301 3-220 (220)
17 4emv_A DNA topoisomerase IV, B 100.0 4.3E-65 1.5E-69 519.6 14.6 218 74-301 8-226 (226)
18 3ttz_A DNA gyrase subunit B; p 100.0 7.4E-56 2.5E-60 444.1 12.7 197 77-303 2-198 (198)
19 3fv5_A DNA topoisomerase 4 sub 100.0 1.3E-53 4.3E-58 429.3 16.6 201 87-299 1-201 (201)
20 2q2e_B Type 2 DNA topoisomeras 100.0 5.7E-40 1.9E-44 377.3 3.1 303 81-443 12-334 (621)
21 2zbk_B Type 2 DNA topoisomeras 99.9 1.2E-26 4.1E-31 263.4 3.5 281 80-412 5-310 (530)
22 3na3_A DNA mismatch repair pro 99.9 1.8E-21 6.1E-26 210.0 21.2 284 79-414 6-305 (348)
23 1b63_A MUTL; DNA mismatch repa 99.9 7.4E-22 2.5E-26 212.8 16.2 245 81-358 4-267 (333)
24 3h4l_A DNA mismatch repair pro 99.8 9.9E-21 3.4E-25 205.8 17.6 284 81-414 5-328 (367)
25 1h7s_A PMS1 protein homolog 2; 99.8 3.1E-19 1E-23 194.5 18.9 281 80-414 13-333 (365)
26 1mu5_A Type II DNA topoisomera 99.8 2.3E-18 7.9E-23 193.3 22.7 315 80-433 6-444 (471)
27 3t0h_A Heat shock protein HSP 98.7 7.7E-08 2.6E-12 98.1 11.4 161 107-286 33-216 (228)
28 2wer_A ATP-dependent molecular 98.6 1.7E-07 5.8E-12 95.0 12.7 163 108-287 28-212 (220)
29 2ior_A Chaperone protein HTPG; 98.6 5.4E-08 1.9E-12 99.7 8.5 149 107-272 48-221 (235)
30 3o0i_A HSP90AA1 protein; HSP90 98.6 1.3E-07 4.5E-12 97.6 9.7 161 108-286 62-244 (256)
31 1yc1_A HSP 86, heat shock prot 98.5 2.5E-07 8.6E-12 96.3 10.6 163 107-287 69-253 (264)
32 2gqp_A Endoplasmin; GRP94, HSP 98.5 3.3E-07 1.1E-11 93.9 11.2 165 107-287 33-222 (236)
33 3peh_A Endoplasmin homolog; st 98.4 1.7E-06 5.7E-11 90.4 12.0 160 108-286 48-232 (281)
34 2ioq_A Chaperone protein HTPG; 98.3 3.6E-06 1.2E-10 97.2 14.6 156 107-280 28-210 (624)
35 1y4s_A Chaperone protein HTPG; 98.3 2E-06 6.7E-11 98.1 12.2 155 108-280 29-210 (559)
36 3nmq_A Heat shock protein HSP 98.3 2.4E-06 8.2E-11 87.4 9.7 163 107-287 40-224 (239)
37 1qy5_A Endoplasmin; GRP94, NEC 98.2 1.6E-06 5.6E-11 90.3 8.1 163 108-286 30-217 (269)
38 2o1u_A Endoplasmin; GRP94, HSP 98.0 1.5E-05 5.3E-10 92.3 11.7 159 108-284 47-232 (666)
39 2cg9_A ATP-dependent molecular 98.0 3.6E-05 1.2E-09 89.3 14.3 158 108-282 28-207 (677)
40 3ied_A Heat shock protein; HSP 97.8 4.9E-05 1.7E-09 78.2 9.1 132 129-272 120-260 (272)
41 1th8_A Anti-sigma F factor; SP 97.7 6.3E-05 2.2E-09 69.7 7.5 94 105-218 38-136 (145)
42 3jz3_A Sensor protein QSEC; he 97.6 6.6E-05 2.3E-09 73.5 5.8 79 105-203 116-194 (222)
43 1id0_A PHOQ histidine kinase; 97.5 0.00028 9.7E-09 65.1 9.4 79 103-203 41-122 (152)
44 3a0y_A Sensor protein; ATP-LID 97.5 0.00028 9.7E-09 64.9 9.1 76 104-201 45-123 (152)
45 3zxo_A Redox sensor histidine 97.5 0.00012 4.1E-09 66.0 6.2 61 105-203 42-104 (129)
46 3sl2_A Sensor histidine kinase 97.5 0.00018 6.2E-09 68.6 7.5 84 104-203 41-129 (177)
47 1bxd_A ENVZ(290-450), protein 97.4 0.00019 6.6E-09 67.3 7.0 95 104-218 45-147 (161)
48 3ehg_A Sensor kinase (YOCF pro 97.4 0.00042 1.4E-08 62.8 8.5 64 105-203 39-105 (128)
49 2e0a_A Pyruvate dehydrogenase 97.4 0.00019 6.5E-09 78.2 6.8 91 105-203 229-327 (394)
50 1r62_A Nitrogen regulation pro 97.3 0.00022 7.4E-09 66.2 6.0 79 104-203 46-137 (160)
51 1ysr_A Sensor-type histidine k 97.3 0.00028 9.7E-09 65.2 6.1 80 104-203 44-126 (150)
52 2c2a_A Sensor histidine kinase 97.3 0.00041 1.4E-08 70.1 7.8 87 103-203 135-225 (258)
53 2q8g_A [pyruvate dehydrogenase 97.3 0.00033 1.1E-08 76.7 7.5 91 105-203 242-340 (407)
54 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.0005 1.7E-08 74.6 8.3 108 104-219 236-371 (388)
55 3zxq_A Hypoxia sensor histidin 97.2 0.00035 1.2E-08 62.5 5.8 45 105-152 38-84 (124)
56 1y8o_A [pyruvate dehydrogenase 97.2 0.00027 9.2E-09 77.8 6.0 91 105-203 252-351 (419)
57 2btz_A Pyruvate dehydrogenase 97.2 0.00035 1.2E-08 76.1 6.4 107 104-219 229-348 (394)
58 4ew8_A Sensor protein DIVL; si 97.1 0.0013 4.5E-08 66.4 8.9 77 105-203 154-233 (268)
59 3ehh_A Sensor kinase (YOCF pro 97.0 0.00074 2.5E-08 66.2 6.5 63 106-203 130-195 (218)
60 3a0r_A Sensor protein; four he 96.9 0.0012 4E-08 69.2 6.9 75 105-201 243-320 (349)
61 1i58_A Chemotaxis protein CHEA 96.8 0.0006 2.1E-08 65.7 3.8 48 106-153 47-107 (189)
62 1b3q_A Protein (chemotaxis pro 96.7 0.0011 3.7E-08 72.1 5.3 47 107-153 107-166 (379)
63 3ke6_A Protein RV1364C/MT1410; 96.6 0.004 1.4E-07 68.1 8.7 83 107-220 298-385 (399)
64 3d36_A Sporulation kinase B; G 96.3 0.002 7E-08 63.7 3.8 79 104-203 121-202 (244)
65 4fpp_A Phosphotransferase; fou 95.3 0.0077 2.6E-07 61.1 3.2 77 106-202 146-225 (247)
66 2zbk_B Type 2 DNA topoisomeras 82.4 7.3 0.00025 44.0 11.9 99 330-444 350-457 (530)
67 1ixm_A SPO0B, protein (sporula 72.5 3.7 0.00013 40.1 5.0 41 113-153 115-161 (192)
68 2q2e_B Type 2 DNA topoisomeras 45.8 44 0.0015 38.5 8.3 91 330-432 353-450 (621)
69 1t6t_1 Putative protein; struc 36.0 10 0.00036 34.2 0.9 27 570-596 60-87 (118)
70 2fcj_A Small toprim domain pro 25.0 18 0.00063 32.6 0.5 70 570-656 49-119 (119)
No 1
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-166 Score=1504.44 Aligned_cols=609 Identities=24% Similarity=0.359 Sum_probs=500.6
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCCC-----------------------chhHHHHHHHHhhHHHHhcCC-CCeE
Q 005028 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-----------------------GLHHLVYEILDNAVDEAQAGY-ASNI 130 (718)
Q Consensus 75 ~~Y~~~~i~~L~~lE~VrkRPgMYIGs~~~~-----------------------gL~~lv~EIldNAvDe~~ag~-~~~I 130 (718)
..|.+++||+|+||||||||||||||||++. |||||||||||||+||+++|+ |+.|
T Consensus 5 ~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I 84 (1177)
T 4gfh_A 5 PVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRI 84 (1177)
T ss_dssp --CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred CCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeE
Confidence 3467889999999999999999999999865 999999999999999999997 6899
Q ss_pred EEEEe-CCCcEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEE-
Q 005028 131 EVALL-ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW- 208 (718)
Q Consensus 131 ~V~l~-~dg~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~- 208 (718)
+|+|+ +||+|+|+||||||||++||++|+|+||+|||+||||||||++ +|++||||||||+|||||||++|.|+|+
T Consensus 85 ~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~--~ykvSGGLHGVG~svVNALS~~~~vev~~ 162 (1177)
T 4gfh_A 85 DVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETAD 162 (1177)
T ss_dssp EEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCS--SCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred EEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCC--CCeEeccCCChhhhHHhhcCCceEEEEEE
Confidence 99999 5999999999999999999999999999999999999999988 9999999999999999999999998885
Q ss_pred -eCCEEEEEEEecCcccccceeeccCCCCCCCCceEEEEEeCccccccccccCHHHHHHHHHHHhhcCC---CcEEEEee
Q 005028 209 -RDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP---KLTIALRK 284 (718)
Q Consensus 209 -r~gk~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~Lnp---glkI~l~d 284 (718)
|+|+.|.|+|++|+++.+++.+. ....+++||+|+|+||+++|++ ..|+++++..|++++|+||+ ++.+.+++
T Consensus 163 ~r~Gk~y~q~f~~g~~~~~~~~i~--~~~~~~tGT~V~F~PD~~iF~~-~~~~~d~l~~~~r~~~~l~~~~~~~~~~~~g 239 (1177)
T 4gfh_A 163 LNVGQKYVQKWENNMSICHPPKIT--SYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNG 239 (1177)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEE--ECCSSCCCEEEEEEECHHHHTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEESS
T ss_pred EcCCEEEEEEEECCcccCCCCeee--cCCCCCCceEEEEEeCHHhcCC-cEeCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 89999999999999988765441 1334578999999999999986 47999999999999998875 46788888
Q ss_pred cCCCCCCCcceeEEecccHHHHHHHHhcCCCCCC--------CeeEEEeccCceEEEEEEEecCCCCCceeeeeccceec
Q 005028 285 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH--------DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRT 356 (718)
Q Consensus 285 er~~~~~~~~e~f~~~~Gl~dyv~~l~~~~~~l~--------~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T 356 (718)
++. +.++|++|+.+|++.++..+..++ ++..+..+..+.+||||++|+ +++ .+++||||+|+|
T Consensus 240 ~~~-------~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~-d~~-~~~~SFvN~I~T 310 (1177)
T 4gfh_A 240 KSL-------KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVS-DIS-FQQISFVNSIAT 310 (1177)
T ss_dssp CBC-------CCCSHHHHHGGGTTTC-----------------CCSCEEEEEETTEEEEEEEC-SSS-CEEEEEESSCEE
T ss_pred Cee-------EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEeccceEEEeeccc-CCc-ceeeeeeeeeec
Confidence 764 457889999999988776544322 112233344566799999998 444 446799999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHhhccEEEEEEeecCCCCCCccccccCCchhhhhhhhhH-H
Q 005028 357 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV-Q 435 (718)
Q Consensus 357 ~~GGTHv~g~~~alt~~in~~~kk~~~~k~k~~~l~~~dIregL~~vVsvki~nP~FegQTKekL~n~ev~~~v~~~v-~ 435 (718)
++||||++||++||+++||+|+++.+. .+++++|||+||++||||+++||+|+||||+||+|+.........+ .
T Consensus 311 ~~GGTHv~gfr~altr~in~~~~k~~~-----~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~ 385 (1177)
T 4gfh_A 311 TMGGTHVNYITDQIVKKISEILKKKKK-----KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPL 385 (1177)
T ss_dssp TTEEHHHHHHHHHHHHHHHHHHHHHSS-----SCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCH
T ss_pred CCCchHHHHHHHHHHHHHHHHhhhhcc-----ccCCHHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchH
Confidence 999999999999999999999876543 4699999999999999999999999999999999986554333322 2
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC---CCCCCCceEEEeeccCCCcc
Q 005028 436 EYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGS 512 (718)
Q Consensus 436 ~~l~~~l~~np~~~~~I~~k~~~~~kar~aakkar~~~r~k~~~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gs 512 (718)
+.+..+++ . .|+++++.++++++++++++...++|+.+ .++ +||+||+ ++++++||||||||||||||
T Consensus 386 ~~~~~~~~--~----~i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~-~KL~d~~~~~skd~~~~ELfiVEGDSAgGs 456 (1177)
T 4gfh_A 386 EYINKIMK--T----DLATRMFEIADANEENALKKSDGTRKSRI--TNY-PKLEDANKAGTKEGYKCTLVLTEGDSALSL 456 (1177)
T ss_dssp HHHHHHTT--S----HHHHHHHHHHTTCC------------CCC--CSC-TTCBCCTTTTTTTTTTCEEEEEEHHHHHHH
T ss_pred HHhhhhhh--H----HHHHHHHHHHHHHHHHHHHhhhhhcchhh--ccc-cccccccccCCCCccceEEEEecCCchhhh
Confidence 33444332 2 34444444555444444444444444432 223 4999987 68999999999999999999
Q ss_pred ccccC---CCCceEecccCcccccccccCHHHHhhChhHHHHHHHhcCCccCCcCcccccceeeEEEeecCCCCCchhhh
Q 005028 513 AKQGR---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT 589 (718)
Q Consensus 513 ak~gR---dr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~~lG~~~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~ 589 (718)
||+|| +|+|||||||||||||||+|+.+||++|+||++||+|||||++.+.+|+++||||||||||||||||+||||
T Consensus 457 Ak~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMTDADvDGsHIrt 536 (1177)
T 4gfh_A 457 AVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKG 536 (1177)
T ss_dssp HHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHH
T ss_pred HhhcccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEeecCCCCcchHHH
Confidence 99999 889999999999999999999999999999999999999999655559999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhh-cCcEEEecCCeEEEEeC---CeEEEeeCHHHHHHHHHhCCCCCcccceEeeccCCCChhhHHhh
Q 005028 590 LLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERG---KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWET 665 (718)
Q Consensus 590 Llltff~~~~p~Li~-~G~v~~~~tPL~kv~~g---k~~~y~ys~~E~~~~~~~~~~~~~~~ikryKGLGem~~~ql~et 665 (718)
|||||||||||+||+ +||||+|+||||||+.| |+.+|||+++|+++|+++....++|+||||||||||+|+|||||
T Consensus 537 LLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~y~~~e~e~~~~~~~~~~~~~iqryKGLGEm~~~ql~Et 616 (1177)
T 4gfh_A 537 LIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREY 616 (1177)
T ss_dssp HHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHHHTGGGSCEEEEEC----CCCHHHHHHH
T ss_pred HHHHHHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEEechHHHHHHHHHhcCCCCcceeecccCCcccHHHHHHH
Confidence 999999999999999 99999999999999865 45789999999999998876566899999999999999999999
Q ss_pred hcCcccee--eeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCcc
Q 005028 666 TLNPEQRM--LKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 714 (718)
Q Consensus 666 t~dp~~r~--l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~~~~~~ 714 (718)
||||++|+ +.+++.+|++.+++ +|||+++++||+||++|.+...++
T Consensus 617 t~~~d~~~~~~~~v~~~d~~~~d~---~f~~~~~~~RkewI~~~~~~~~~d 664 (1177)
T 4gfh_A 617 FSNLDRHLKIFHSLQGNDKDYIDL---AFSKKKADDRKEWLRQYEPGTVLD 664 (1177)
T ss_dssp HHTCTTTEEEEECCCTTTHHHHHH---HHCGGGHHHHHHHHHHCCTTCCCC
T ss_pred HhCcccceEEEEEcccccHHHHHH---HHhccchhhHHHHHHhcCcccccc
Confidence 88877655 44566666655554 457999999999999999876544
No 2
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=100.00 E-value=1.2e-110 Score=918.27 Aligned_cols=386 Identities=34% Similarity=0.594 Sum_probs=321.4
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCcEEEEECCCCcccccc
Q 005028 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLH 154 (718)
Q Consensus 75 ~~Y~~~~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~isV~DnGrGIPv~~~ 154 (718)
.+|++++||+|+|||||||||||||||+++ ||||+||||||+||+++|+|+.|.|+|++||+|+|+|||||||+++|
T Consensus 22 ~~Y~a~~I~vL~glE~VRkRPgMYiGst~~---~hlv~EivdNsiDea~ag~~~~I~V~i~~dgsI~V~DnGrGIPv~~h 98 (408)
T 3lnu_A 22 TRYNAADIEVLSGLDPVKRRPGMYTDTARP---NHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVDIH 98 (408)
T ss_dssp ------------CCHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred CCcCHhHceeccccHHHhcCCccEECCCCc---chhhHHHHHHHHHHhhcCCCceEEEEEeCCCeEEEEEcCCCCCcccc
Confidence 479999999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEEeCCEEEEEEEecCcccccceeeccCC
Q 005028 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 234 (718)
Q Consensus 155 ~~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~gk~y~q~f~~G~~~~~l~~~~~~~ 234 (718)
|++|+|++|+|||+|||||||+++ .|++|||+||||+|||||||++|+|+|+|+|+.|.|+|++|+++.++..+. .
T Consensus 99 ~~~~~~~~e~i~t~lhaggKfd~~--~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk~~~q~f~~G~~~~~l~~ig--~ 174 (408)
T 3lnu_A 99 PEEKIPGVELILTRLHAGGKFNNR--NYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVG--T 174 (408)
T ss_dssp TTTCSBHHHHHHHCC----------------------CHHHHHHTEEEEEEEEEETTEEEEEEEETTEECSCCEEEE--E
T ss_pred cccCCcchheEEEecccCCCcCCC--ceeecCCccccccceehhccCeEEEEEEECCEEEEEEECCCEECCCceEec--c
Confidence 999999999999999999999987 999999999999999999999999999999999999999999998886541 0
Q ss_pred CCCCCCceEEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecccHHHHHHHHhcCC
Q 005028 235 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314 (718)
Q Consensus 235 ~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~~~ 314 (718)
....++||+|+|+||+++|++ ..|++++|.+||+++|||||||+|+|+|++.+ ..++|+|++||++||++++.++
T Consensus 175 ~~~~~~GT~V~F~PD~~iF~~-~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~----~~~~f~yegGi~~yv~~l~~~k 249 (408)
T 3lnu_A 175 VGKKNTGTRLRFWADPKYFDT-PKFNVRALRHLLRAKAVLCPGLTVKLHDEATG----EQDSWYFENGLRDYLKGEMAEH 249 (408)
T ss_dssp CCTTCCEEEEEEEECGGGSSC-SCCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEEECSSSHHHHHHHHTTTS
T ss_pred CcCCCCCcEEEEEECHHHhCC-CCcCHHHHHHHHHHHHhhcCCCEEEEEeccCC----ceeEEEcCchHHHHHHHHhcCC
Confidence 112579999999999999974 57999999999999999999999999999964 3579999999999999999988
Q ss_pred CCCCCeeEEEeccCc-eEEEEEEEecCCCCCceeeeeccceecCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCH
Q 005028 315 KPLHDVVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393 (718)
Q Consensus 315 ~~l~~~i~~~~~~~~-~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~alt~~in~~~kk~~~~k~k~~~l~~ 393 (718)
+++++++.+..+.++ +.|||||||+ ++|+++++||||+|+|++||||++||++||+++||+|+++.+++|++ .++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~ve~Al~~~-~~~~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~kk~-~~l~~ 327 (408)
T 3lnu_A 250 EMLPADLFVGSLKKDTEIVDWAAGWV-PEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRG-VKLAP 327 (408)
T ss_dssp CCEEEEEEEEEEECSSCEEEEEEEEC-SSSCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCTT-CCCCH
T ss_pred CcCCCCCeEeeEecCceeEEEEEEEc-CCCCeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcccCC-CCCCH
Confidence 877755555555566 8999999998 67999999999999999999999999999999999999999888875 89999
Q ss_pred HHHhhccEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005028 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLV 473 (718)
Q Consensus 394 ~dIregL~~vVsvki~nP~FegQTKekL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~kar~aakkar~~~ 473 (718)
+||||||++||||+++||+|+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+ |||||++
T Consensus 328 ~DiregL~aviSvkv~~PqFegQTK~kL~n~ev~~~V~~~v~~~l~~~l~enp~~ak~i~~k~i~aa~aR~--rkare~~ 405 (408)
T 3lnu_A 328 EDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRASARL--KTEKQIV 405 (408)
T ss_dssp HHHHTTEEEEEEEECSSCCEESTTSCEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHhhCeEEEEEEEcCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred hhc
Q 005028 474 RQK 476 (718)
Q Consensus 474 r~k 476 (718)
|||
T Consensus 406 rrK 408 (408)
T 3lnu_A 406 RKK 408 (408)
T ss_dssp ---
T ss_pred ccC
Confidence 876
No 3
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=4.8e-105 Score=875.86 Aligned_cols=387 Identities=44% Similarity=0.794 Sum_probs=366.2
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCCC-chhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCcEEEEECCCCccccc
Q 005028 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-GLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153 (718)
Q Consensus 75 ~~Y~~~~i~~L~~lE~VrkRPgMYIGs~~~~-gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~isV~DnGrGIPv~~ 153 (718)
.+|++++||+|+++|||||||||||||++.. ||+|+|+||||||+||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 2 ~~y~~~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~ 81 (391)
T 1ei1_A 2 NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGI 81 (391)
T ss_dssp CCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred CCCCHHHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCCEEEEEECCCCcccCc
Confidence 4799999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEEeCCEEEEEEEecCcccccceeeccC
Q 005028 154 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLP 233 (718)
Q Consensus 154 ~~~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~gk~y~q~f~~G~~~~~l~~~~~~ 233 (718)
||++|+|++|+|||++||||||+++ .|++|||+||+|+|+|||||++|+|+++|+|+.|.|+|++|+++.++...
T Consensus 82 ~~~~~~~~~elv~~~lhagsKf~~~--~~~vSgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~l~~~--- 156 (391)
T 1ei1_A 82 HPEEGVSAAEVIMTVLHAGGKFDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT--- 156 (391)
T ss_dssp CTTTSSBHHHHHHHSTTEESCSSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE---
T ss_pred ccccCcchHHHhheeccccCCcCCC--cccccCCccccchHHHHHhcCeEEEEEEeCCcEEEEEEcCCcccccceec---
Confidence 9999999999999999999999987 89999999999999999999999999999999999999999998776543
Q ss_pred CCCCCCCceEEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecccHHHHHHHHhcC
Q 005028 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313 (718)
Q Consensus 234 ~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~~ 313 (718)
+...++||+|+|+||+.+|++...|+++.|.+||+++||||||++|+|+|++.+ ..+.|+|++||++||.+++.+
T Consensus 157 -~~~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~ 231 (391)
T 1ei1_A 157 -GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG----KEDHFHYEGGIKAFVEYLNKN 231 (391)
T ss_dssp -EECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEECCCSHHHHHHHHHHHT
T ss_pred -cCcCCCccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCc----ceEEEEcCchHHHHHHHHcCC
Confidence 223579999999999999964157999999999999999999999999999853 357899999999999999998
Q ss_pred CCCCC-CeeEEEeccCceEEEEEEEecCCCCCceeeeeccceecCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 005028 314 KKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 392 (718)
Q Consensus 314 ~~~l~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~alt~~in~~~kk~~~~k~k~~~l~ 392 (718)
+++++ +++++..+.+++.||+|++|+ ++|.+.++||||+|+|++||||++||+++|+++||+|+++.+++|+++.+++
T Consensus 232 ~~~~~~~~i~~~~~~~~i~veva~~~~-~~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~~~~ 310 (391)
T 1ei1_A 232 KTPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 310 (391)
T ss_dssp SCBSSSCCEEEEEEETTEEEEEEEEEB-SSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCC
T ss_pred CcccccccEEEEEecCCEEEEEEEEcc-CCCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCccC
Confidence 88887 678888888899999999998 7898999999999999999999999999999999999999888887778999
Q ss_pred HHHHhhccEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005028 393 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 472 (718)
Q Consensus 393 ~~dIregL~~vVsvki~nP~FegQTKekL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~kar~aakkar~~ 472 (718)
++||||||++||||+++||+|+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+|||||||+
T Consensus 311 ~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~ar~aa~kare~ 390 (391)
T 1ei1_A 311 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 390 (391)
T ss_dssp HHHHTTTEEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccEEEEEEecCCCCcCCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=1.1e-101 Score=849.44 Aligned_cols=382 Identities=34% Similarity=0.581 Sum_probs=356.2
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCcEEEEECCCCcccccc
Q 005028 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLH 154 (718)
Q Consensus 75 ~~Y~~~~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~isV~DnGrGIPv~~~ 154 (718)
.+|++++||+|+|+|||||||||||||++. ||+|+|||+||+||+++|+|+.|.|+|+.||+|+|+|||||||++.|
T Consensus 3 ~~y~~~~i~~L~gle~vr~RPgmYiGs~~~---~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~~ 79 (390)
T 1s16_A 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIH 79 (390)
T ss_dssp -CCSGGGCEECCTTHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred CCCCHHHcEEcchhHHHhhCCceeecCCcH---HHHHHHHHHHHHHHHhcCCCCEEEEEEecCCEEEEEECCCCcCcccc
Confidence 469999999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEEeCCEEEEEEEecCcccccceeeccCC
Q 005028 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 234 (718)
Q Consensus 155 ~~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~gk~y~q~f~~G~~~~~l~~~~~~~ 234 (718)
|++|+|++|++|++|||||||+++ .|++|||+||+|+++|||||++|+|+++|+|+.|.|+|++|+++.++.++
T Consensus 80 ~~~~~~~~e~v~~~lhagsKf~~~--~~~~sgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~~---- 153 (390)
T 1s16_A 80 PEEGVPAVELILCRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVV---- 153 (390)
T ss_dssp TTTCSBHHHHHHHCTTEESCSSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEE----
T ss_pred cccCcchhhheeeeecccCCcCCC--cccccCCccccchHHHHHhhcccEEEEEECCcEEEEEEeCCcccccceec----
Confidence 999999999999999999999987 89999999999999999999999999999999999999999988766544
Q ss_pred CCC--CCCceEEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecccHHHHHHHHhc
Q 005028 235 DSK--DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312 (718)
Q Consensus 235 ~~~--~~~GT~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~ 312 (718)
+.. .++||+|+|+||+.+|++ ..|+++.|.+||+++|+||||++|+|+|++.+ ..+.|+|++||.+||.+++.
T Consensus 154 g~~~~~~~GT~V~f~Pd~~~F~~-~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~ 228 (390)
T 1s16_A 154 GTCGKRNTGTSVHFWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCYQDGLNDYLAEAVN 228 (390)
T ss_dssp EECCTTCCEEEEEEEECGGGSSC-CSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECCSSCHHHHHHHHHT
T ss_pred ccccCCCCceEEEEEECccccCc-ccccHHHHHHHHHHHHhcCCCcEEEEEeCCCc----eeEEEEcCCcHHHHHHHHhC
Confidence 222 378999999999999964 57999999999999999999999999999853 34789999999999999998
Q ss_pred CCCCCC-CeeEEEeccCceEEEEEEEecCCCCCceeeeeccceecCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 005028 313 DKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 391 (718)
Q Consensus 313 ~~~~l~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~alt~~in~~~kk~~~~k~k~~~l 391 (718)
++++++ +++.+..+.+++.||+|++|++++|.+.++||||+|+|.+||||++||++||+++||+|+++.+++| ++.++
T Consensus 229 ~~~~~~~~~i~~~~~~~~~~ve~a~~~~~~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k-~~~~l 307 (390)
T 1s16_A 229 GLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKL 307 (390)
T ss_dssp TSCCEEEEEEEEEEECSSEEEEEEEEECTTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSC-TTCCC
T ss_pred CCcccCCCcEEEEEeeCCEEEEEEEEeccCCCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCc-cCCcc
Confidence 877777 6788888888999999999933788899999999999999999999999999999999999999888 67899
Q ss_pred CHHHHhhccEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005028 392 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 471 (718)
Q Consensus 392 ~~~dIregL~~vVsvki~nP~FegQTKekL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~kar~aakkar~ 471 (718)
+++||||||++||||+++||+|+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+||+||||
T Consensus 308 ~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~aR~aa~kare 387 (390)
T 1s16_A 308 SAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV 387 (390)
T ss_dssp CHHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHhhccEEEEEeecCCCCccccccchhcChhHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=1e-95 Score=803.09 Aligned_cols=385 Identities=43% Similarity=0.690 Sum_probs=359.8
Q ss_pred CCCcccceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCcEEEEECCCCccccccC
Q 005028 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHP 155 (718)
Q Consensus 76 ~Y~~~~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~isV~DnGrGIPv~~~~ 155 (718)
+|++++||+|+++||||+||||||||++.+|++++++|+|+||+||+++++++.|.|+++.+|+|+|+|||+|||++.|+
T Consensus 2 ~y~~~~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~~i~V~DnG~GIp~~~~~ 81 (390)
T 1kij_A 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMP 81 (390)
T ss_dssp -----CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEET
T ss_pred CCCHHHCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCCEEEEEEcCCCCCHHHhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEEeCCEEEEEEEecCcccccceeeccCCC
Q 005028 156 ATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVD 235 (718)
Q Consensus 156 ~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~gk~y~q~f~~G~~~~~l~~~~~~~~ 235 (718)
.+|+|++|+||+.+|+|+||+++ .|++|||+||+|+++||++|++++|+++++|+.|.|+|++|++..++.+. +
T Consensus 82 ~~~~~~~e~if~~~~~~~kf~~~--~~~~s~G~~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~G~~~~~~~~~----~ 155 (390)
T 1kij_A 82 EEGKPAVEVIYNTLHSGGKFEQG--AYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVV----G 155 (390)
T ss_dssp TTTEEHHHHHHHSSCEESGGGGS--SCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEE----E
T ss_pred hccccchhhheeeeeecccccCc--cccccCCCCCcceeeecccccceEEEEecCCcEEEEEEcCCcccccceee----c
Confidence 99999999999999999999876 88999999999999999999999999999999999999999987666543 2
Q ss_pred CC--CCCceEEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecccHHHHHHHHhcC
Q 005028 236 SK--DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313 (718)
Q Consensus 236 ~~--~~~GT~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~~ 313 (718)
.. .++||+|+|+||+++|++ ..|+++.|.+||+++|+||||++|+|+|++.+ ..+.|+|++||.+||.+++.+
T Consensus 156 ~~~~~~~GT~V~f~Pd~~~F~~-~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~----~~~~f~~~~Gl~~~v~~l~~~ 230 (390)
T 1kij_A 156 EAPRGKTGTRVTFKPDPEIFGN-LRFDPSKIRARLREVAYLVAGLKLVFQDRQHG----KEEVFLDKGGVASFAKALAEG 230 (390)
T ss_dssp ECGGGCCEEEEEEEECHHHHTT-CCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT----EEEEECCTTHHHHHHHHHTTT
T ss_pred cccCCCCCcEEEEEEChHHhCC-ccccHHHHHHHHHHhcCcCCCcEEEEEeCCCc----ceEEEEcCCcHHHHHHHHhCC
Confidence 22 579999999999999964 57999999999999999999999999999843 247899999999999999998
Q ss_pred CCCCC-CeeEEEeccCceEEEEEEEecCCCCCceeeeeccceecCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 005028 314 KKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 392 (718)
Q Consensus 314 ~~~l~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~alt~~in~~~kk~~~~k~k~~~l~ 392 (718)
+++++ +++++.++.+++.||+|++|+ ++|.+.++||||+|+|.+||||++||+++|++++|+|+++.+++|+++.+++
T Consensus 231 ~~~~~~~~i~~~~~~~~i~ve~a~~~~-~~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~k~~~~~l~ 309 (390)
T 1kij_A 231 EDLLYEKPFLIRGTHGEVEVEVGFLHT-QGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPT 309 (390)
T ss_dssp SCBSCSSCEEEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCC
T ss_pred CCcCCCCcEEEEeecCCeEEEEEEEec-CCCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCccccccCCcC
Confidence 88887 678888888899999999997 7888999999999999999999999999999999999999999888788999
Q ss_pred HHHHhhccEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005028 393 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 472 (718)
Q Consensus 393 ~~dIregL~~vVsvki~nP~FegQTKekL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~kar~aakkar~~ 472 (718)
++|||+||++||||+++||+|+||||++|+|++++.+|++++.+.|..||++||++++.|++|++.+++||+|||||||+
T Consensus 310 ~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~~aR~aa~kare~ 389 (390)
T 1kij_A 310 GDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL 389 (390)
T ss_dssp TTTTTTTEEEEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcEEEEEeecCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=1.7e-96 Score=811.77 Aligned_cols=361 Identities=22% Similarity=0.328 Sum_probs=303.6
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCC-----------------------CchhHHHHHHHHhhHHHHh-cCCCCeE
Q 005028 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-----------------------RGLHHLVYEILDNAVDEAQ-AGYASNI 130 (718)
Q Consensus 75 ~~Y~~~~i~~L~~lE~VrkRPgMYIGs~~~-----------------------~gL~~lv~EIldNAvDe~~-ag~~~~I 130 (718)
...-+++||+|+++|||||||||||||+++ +||||+||||||||+||++ +|+|+.|
T Consensus 10 ~~~~e~~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I 89 (418)
T 1pvg_A 10 PVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRI 89 (418)
T ss_dssp --CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred ccchhhheeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEE
Confidence 345577999999999999999999999998 8999999999999999996 6999999
Q ss_pred EEEEeCC-CcEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEE-
Q 005028 131 EVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW- 208 (718)
Q Consensus 131 ~V~l~~d-g~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~- 208 (718)
.|+|++| |+|+|+|||||||+++||++|+|+||+|||+|||||||+++ +|++||||||||+|||||||++|+|+|+
T Consensus 90 ~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~--~ykvSGGLhGVG~SvVNALS~~l~V~v~r 167 (418)
T 1pvg_A 90 DVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETAD 167 (418)
T ss_dssp EEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTT--SCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCC--ceeccCCccceeeeeeeeccceEEEEEEE
Confidence 9999988 69999999999999999999999999999999999999987 9999999999999999999999999999
Q ss_pred -eCCEEEEEEEecCc--ccccceeeccCCCCCCCCceEEEEEeCccccccccccCHHH---HHHHHHHHhhcCCCcEEEE
Q 005028 209 -RDGMEYHQKYSRGK--PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIAL 282 (718)
Q Consensus 209 -r~gk~y~q~f~~G~--~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~---i~~Rl~elA~LnpglkI~l 282 (718)
|+|+.|+|+|++|+ +..+ ... .....++||+|+||||+++|++ ..|++++ |.+||+++|||||||+|+|
T Consensus 168 ~rdGk~y~q~f~~G~~~~~~p-~i~---~~~~~~tGT~V~F~PD~~iF~~-~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l 242 (418)
T 1pvg_A 168 LNVGQKYVQKWENNMSICHPP-KIT---SYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYL 242 (418)
T ss_dssp TTTTEEEEEEEETTTTEECCC-EEE---ECCSSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred CCCCcEEEEEEEcCCCccCCC-eec---ccCCCCCceEEEEEEChHHcCC-cccCHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 59999999999985 5554 111 1112579999999999999975 4799998 6899999999999999999
Q ss_pred eecCCCCCCCcceeEEecccHHHHHHH----HhcCCC---------CCC-CeeEEEeccCceEEEEEEEecCCCCCceee
Q 005028 283 RKEDSDPEKNQYNEYFFAGGLEEYVQW----LNTDKK---------PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTML 348 (718)
Q Consensus 283 ~der~~~~~~~~e~f~~~~Gl~dyv~~----l~~~~~---------~l~-~~i~~~~~~~~~~veval~~s~~~~~~~~~ 348 (718)
+|+|.+ .+|+++|+++ ++.+++ +++ +|+++.++.+ .||||+||+ +++ ++++
T Consensus 243 ~der~~-----------~~g~~~~v~~y~~~l~~~k~~~~~~~~~~~~~~~~i~~~~~~~--~vevA~~~~-~~~-~~~~ 307 (418)
T 1pvg_A 243 NGKSLK-----------IRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN--RWEVAFAVS-DIS-FQQI 307 (418)
T ss_dssp TTEECC-----------CCSHHHHHHTTTTTC-----------------CCSCEEEEEET--TEEEEEEEC-SSS-CEEE
T ss_pred eccccc-----------cccHHHHHHHHHHhhhcccccccccccccCCCCCCEEEEEecc--eEEEEEEEc-CCC-ceEE
Confidence 999853 1478888875 455555 566 5777776544 589999998 565 6799
Q ss_pred eeccceecCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHhhccEEEEEEeecCCCCCCccccccCCchhhh
Q 005028 349 GYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRK 428 (718)
Q Consensus 349 SFVN~I~T~~GGTHv~g~~~alt~~in~~~kk~~~~k~k~~~l~~~dIregL~~vVsvki~nP~FegQTKekL~n~ev~~ 428 (718)
||||||+|++||||++||+++|++++++|++++ ++.+++++||||||++||||+++||+|+||||+||+|++.+.
T Consensus 308 SFvN~I~T~~GGTH~~g~~~al~~~i~~~~~k~-----~~~~l~g~Dvregl~aviSvkv~~PqFegQTK~kL~~~~~~~ 382 (418)
T 1pvg_A 308 SFVNSIATTMGGTHVNYITDQIVKKISEILKKK-----KKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDF 382 (418)
T ss_dssp EEETTEECTTCBHHHHHHHHHHHHHHHHHHCC----------CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGS
T ss_pred EEeCceeCCCCCcHHHHHHHHHHHHHHHHHHhc-----ccCCCCHHHHhhCeEEEEEEecCCCcccCccchhhcCccccc
Confidence 999999999999999999999999999998753 235799999999999999999999999999999999987755
Q ss_pred hhhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Q 005028 429 VVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAK 467 (718)
Q Consensus 429 ~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~kar~aak 467 (718)
++++++.++|..||++ +.|+++++.+++||+||+
T Consensus 383 v~~~~v~e~l~~~l~~-----~~iv~ki~~~a~ar~aa~ 416 (418)
T 1pvg_A 383 GSRCEIPLEYINKIMK-----TDLATRMFEIADANEENA 416 (418)
T ss_dssp SSCCCCCHHHHHHHTT-----SHHHHHHHHHHHC-----
T ss_pred ccccchhHHHHHHHhh-----hHHHHHHHHHHHHHHHhh
Confidence 4457999999999985 566666667777777654
No 7
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=100.00 E-value=4.6e-96 Score=743.00 Aligned_cols=237 Identities=50% Similarity=0.854 Sum_probs=212.2
Q ss_pred HHhhccccccCCCCCCCCCCCCCCCCCceEEEeeccCCCccccccCCCCceEecccCcccccccccCHHHHhhChhHHHH
Q 005028 472 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 551 (718)
Q Consensus 472 ~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~l 551 (718)
..|||++++.+.|||||+||+++||++|||||||||||||||||||||+||||||||||||||++++.+||++|+||++|
T Consensus 21 ~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsakqgRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~i 100 (268)
T 3k9f_C 21 DKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTM 100 (268)
T ss_dssp ---------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHH
T ss_pred hhhhhhccccCCCCccccCcccCCCCceeEEEeeeecccccccccCccccccccccCCcchhhhcCCHHHHhhCHHHHHH
Confidence 34667888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCcCcccccceeeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCe----EEEe
Q 005028 552 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----VQYC 627 (718)
Q Consensus 552 i~~lG~~~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~v~~~~tPL~kv~~gk~----~~y~ 627 (718)
|+|||||+ +.+||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||++||+ +.||
T Consensus 101 i~alG~g~-g~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~~~~~Y~ 179 (268)
T 3k9f_C 101 IYTIGAGV-GADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 179 (268)
T ss_dssp HHHHCSCC---CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEE
T ss_pred HHHhCCCC-CccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhCCcEEEecCCeEEEEeCCCcccceEEE
Confidence 99999998 577999999999999999999999999999999999999999999999999999999999874 4799
Q ss_pred eCHHHHHHHHHhCCCCCcccceEeeccCCCChhhHHhhhcCccceeeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhc
Q 005028 628 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 707 (718)
Q Consensus 628 ys~~E~~~~~~~~~~~~~~~ikryKGLGem~~~ql~ett~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~ 707 (718)
||++|+++|++++. ++|+||||||||||+|+|||||||||++|+|.||+++|+.+++++|++|||++|++||+||++|
T Consensus 180 y~e~E~~~~~~~~~--~~~~IqryKGLGEm~~~qlweTtmdP~~R~L~~Vti~da~~a~~~f~~LMG~~v~~Rk~fI~~~ 257 (268)
T 3k9f_C 180 WTDGELEELRKQFG--KGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 257 (268)
T ss_dssp CSHHHHHHHHHHSC--TTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred eCHHHHHHHHHhcC--CCCCceEecCCCccCHHHHHHHhcCccceeEEEEEcCcHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 99999999999863 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 005028 708 ANLV 711 (718)
Q Consensus 708 ~~~~ 711 (718)
+..+
T Consensus 258 a~~~ 261 (268)
T 3k9f_C 258 VKFT 261 (268)
T ss_dssp CCCC
T ss_pred hHHh
Confidence 9865
No 8
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00 E-value=1.1e-94 Score=794.15 Aligned_cols=361 Identities=21% Similarity=0.284 Sum_probs=307.1
Q ss_pred cccceeccchhhHhhCCCeeeccCC----------------------CCchhHHHHHHHHhhHHHHh-cCCCCeEEEEEe
Q 005028 79 SEQIQVLEGLEAVRKRPAMYIGSTG----------------------PRGLHHLVYEILDNAVDEAQ-AGYASNIEVALL 135 (718)
Q Consensus 79 ~~~i~~L~~lE~VrkRPgMYIGs~~----------------------~~gL~~lv~EIldNAvDe~~-ag~~~~I~V~l~ 135 (718)
+++||+|+++|||||||||||||++ .+||||+|+||||||+||++ +|+|+.|.|+|+
T Consensus 3 ~~~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~ 82 (400)
T 1zxm_A 3 ERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTID 82 (400)
T ss_dssp HHHSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred hHhheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE
Confidence 4579999999999999999999999 68999999999999999995 799999999999
Q ss_pred CC-CcEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEEe--CCE
Q 005028 136 AD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWR--DGM 212 (718)
Q Consensus 136 ~d-g~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r--~gk 212 (718)
.| |+|+|+|||||||++.||++|+|++|+|||+|||||||+++ .|++|||+||+|+|+|||||++|+|+++| +|+
T Consensus 83 ~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~--~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~ 160 (400)
T 1zxm_A 83 PENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 160 (400)
T ss_dssp TTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGG--GCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTE
T ss_pred CCCCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCC--cccccCCccccceeeeEEeccceEEEEecCCCCc
Confidence 86 89999999999999999999999999999999999999987 89999999999999999999999999998 589
Q ss_pred EEEEEEecCcccccceeeccCCCCCCCCceEEEEEeCccccccccccCHHH---HHHHHHHHhhcCCCcEEEEeecCCCC
Q 005028 213 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKEDSDP 289 (718)
Q Consensus 213 ~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~---i~~Rl~elA~LnpglkI~l~der~~~ 289 (718)
.|.|+|++|++..++..+. ....++||+|+|+||+++|++ ..|++++ |.+|++++|||||||+|+|+|+|.+
T Consensus 161 ~~~~~~~~G~~~~~~~~ig---~~~~~~GT~V~F~Pd~~iF~~-~ef~~~~~~~l~~rlrelA~lnpgv~i~l~der~~- 235 (400)
T 1zxm_A 161 MFKQTWMDNMGRAGEMELK---PFNGEDYTCITFQPDLSKFKM-QSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLP- 235 (400)
T ss_dssp EEEEEEETTTTEECCCEEE---ECCSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEECC-
T ss_pred EEEEEEccCccccCcceec---cCCCCCccEEEEEEChHHhCc-eeecHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC-
Confidence 9999999998877654331 122468999999999999964 5799998 8899999999999999999999842
Q ss_pred CCCcceeEEecccHHHHHHHHhcCCCCCCC-eeEEEeccCceEEEEEEEecCCCCCceeeeeccceecCCCcchHHHHHH
Q 005028 290 EKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368 (718)
Q Consensus 290 ~~~~~e~f~~~~Gl~dyv~~l~~~~~~l~~-~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~ 368 (718)
++||++||++++.+++++++ ++.+..+.+++.||||+||++++|+ ++||||+|+|++||||++||++
T Consensus 236 ----------~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~~~~~~eva~~~~~~~~~--~~sfvN~I~T~~GGTH~~gfr~ 303 (400)
T 1zxm_A 236 ----------VKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQ--QISFVNSIATSKGGRHVDYVAD 303 (400)
T ss_dssp ----------CCSHHHHHHHHHTTCBCSSSSBCCCEEEEEETTEEEEEEECSSSCE--EEEEETTEECTTEEHHHHHHHH
T ss_pred ----------CCCHHHHHHHHhcCCCccCCCCcceEEeecCcEEEEEEEEcCCCce--EEEEeCCccCCCCCcHHHHHHH
Confidence 37999999999998877763 3333334456789999999855773 7999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCHHHHhhccEEEEEEeecCCCCCCccccccCCchhhhhhhh-hHHHHHHHHHhhCHH
Q 005028 369 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ-SVQEYLTEYLELHPD 447 (718)
Q Consensus 369 alt~~in~~~kk~~~~k~k~~~l~~~dIregL~~vVsvki~nP~FegQTKekL~n~ev~~~v~~-~v~~~l~~~l~~np~ 447 (718)
||+++||+|+++++ +++.+++++||||||++||||+++||+|+||||+||+|+++ .+++. ++.+.|..|| .||.
T Consensus 304 altr~i~~y~~k~~---k~~~~l~~~Dvregl~avisvkv~~PqFegQTK~kL~~~~~-~~v~~~~~~~~~~~~l-~~~~ 378 (400)
T 1zxm_A 304 QIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPK-SFGSTCQLSEKFIKAA-IGCG 378 (400)
T ss_dssp HHHHHHHHHHTTCC-------CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGG-GSSSCCCCCHHHHHHH-TTC-
T ss_pred HHHHHHHHHHHHhc---ccCCCcCHHHHhhCeEEEEEEecCCCCcCcccchhhcCccc-ccccccchhHHHHHHH-cChH
Confidence 99999999999762 34568999999999999999999999999999999999988 77777 9999999999 7999
Q ss_pred HHHHHHHHHHHHHHHH
Q 005028 448 VLDSILSKSLSALKAA 463 (718)
Q Consensus 448 ~~~~I~~k~~~~~kar 463 (718)
+++.|+++++.+++++
T Consensus 379 ~~~~i~~~a~~~~~~~ 394 (400)
T 1zxm_A 379 IVESILNWVKFKAQVQ 394 (400)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998765543
No 9
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00 E-value=7.7e-94 Score=766.83 Aligned_cols=249 Identities=51% Similarity=0.871 Sum_probs=181.7
Q ss_pred HHHHHHhhccccccCCCCCCCCCCCCCCCCCceEEEeeccCCCccccccCCCCceEecccCcccccccccCHHHHhhChh
Q 005028 468 RARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 547 (718)
Q Consensus 468 kar~~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~E 547 (718)
+||+++|||+.+..+.|||||+||+++||++|||||||||||||||||||||+||||||||||||||++++.+||++|+|
T Consensus 3 ~are~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~E 82 (420)
T 3nuh_B 3 AAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 82 (420)
T ss_dssp ---------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCCHH
T ss_pred HHHHHHHhhcccccCCCCccccccccCCccceeEEEEeccccccccccccccccccccccCCcchhHhhccHHHHhcCHH
Confidence 57889999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccCCcCcccccceeeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEe
Q 005028 548 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 627 (718)
Q Consensus 548 i~~li~~lG~~~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~v~~~~tPL~kv~~gk~~~y~ 627 (718)
|++||+|||||++.++||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||++||++.||
T Consensus 83 i~~ii~alG~~~g~~~~~~~~LRY~kIiIMTDaDvDGsHIr~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~y~ 162 (420)
T 3nuh_B 83 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 162 (420)
T ss_dssp HHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEEEE
T ss_pred HHHHHHHhCCCCCcCCCChhhcCcCeEEEecCCCCCcccchhHHHHHHHHHhHHHHHCCcEEEecCceEEEEcCCeEEEe
Confidence 99999999999966789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHHhCC------------------------------------------------------------------
Q 005028 628 YDDAELKKVKSSFP------------------------------------------------------------------ 641 (718)
Q Consensus 628 ys~~E~~~~~~~~~------------------------------------------------------------------ 641 (718)
||++|+++|+.+..
T Consensus 163 ~~~~e~~~~~~~~al~~~~l~~~~~~~~~~g~~L~~l~~~~~~~~~~i~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 242 (420)
T 3nuh_B 163 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 242 (420)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHHHH
T ss_pred CCHHHHHHHHhhccccCeEEEeCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhcccCChhhhcCHHHH
Confidence 99999999976400
Q ss_pred --------------------------------------------------------------------------------
Q 005028 642 -------------------------------------------------------------------------------- 641 (718)
Q Consensus 642 -------------------------------------------------------------------------------- 641 (718)
T Consensus 243 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~l~~~~~~s~ey~~l~~~~~~l~~~~~~~~~ 322 (420)
T 3nuh_B 243 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF 322 (420)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHHhhhccccccceEEEEeecccCcceeEEEEEEecCcceEEEEChHHhcCHHHHHHHHHHHHHHHhhcCCcE
Confidence
Q ss_pred -----------------------CCCcccceEeeccCCCChhhHHhhhcCccceeeeeeccccHHHHHHHHHHhcCCCch
Q 005028 642 -----------------------SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVD 698 (718)
Q Consensus 642 -----------------------~~~~~~ikryKGLGem~~~ql~ett~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~ 698 (718)
+.++..||||||||||||+|||||||||++|+|.||+|+|+.+||++|+.|||+.|+
T Consensus 323 i~~~~~~~~v~~~~~~~~~l~~~~~kG~~IQRYKGLGEMNpeQLWETTMdP~~R~LLqV~IeDa~~AD~iFt~LMGD~VE 402 (420)
T 3nuh_B 323 IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVE 402 (420)
T ss_dssp EEESSCEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHCSCC--
T ss_pred EEeCCcceecCCHHHHHHHHHHHhhccceeeeeccCCCCChhhhhhcccCcccceEEEEEehhHHHHHHHHHHhcCCCch
Confidence 235678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCccCCCC
Q 005028 699 TRKELIQNAANLVNLDHLDI 718 (718)
Q Consensus 699 ~RK~~i~~~~~~~~~~~ld~ 718 (718)
|||+||++||-. +.||||
T Consensus 403 PRR~FIe~NAL~--V~nLDi 420 (420)
T 3nuh_B 403 PRRAFIEENALK--AANIDI 420 (420)
T ss_dssp --------------------
T ss_pred HhHHHHHhhhcc--cccCCC
Confidence 999999999985 579997
No 10
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00 E-value=8.7e-92 Score=704.96 Aligned_cols=228 Identities=47% Similarity=0.818 Sum_probs=176.6
Q ss_pred CCCCCCCCCCCceEEEeeccCCCccccccCCCCceEecccCcccccccccCHHHHhhChhHHHHHHHhcCCccCCcCccc
Q 005028 488 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 567 (718)
Q Consensus 488 L~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~~lG~~~~~~~~~~~ 567 (718)
..|-.++||++|||||||||||||||||||||+||||||||||||||++++.+||++|+||++||+|||||+ +++||++
T Consensus 9 ~~~~~~~d~~~~eLflvEGDSAgGsak~gRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG~~~-g~~~d~~ 87 (242)
T 3m4i_A 9 VDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIG 87 (242)
T ss_dssp ------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCS-GGGCCGG
T ss_pred CCCccccChhheEEEEEecccccchhhhccccccccccccCCcchhhhhcCHHHHhhCHHHHHHHHHhCCCc-Ccccccc
Confidence 345568999999999999999999999999999999999999999999999999999999999999999998 5679999
Q ss_pred ccceeeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCC-eEEEeeCHHHHHHHHHhCCC-CCc
Q 005028 568 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK-QVQYCYDDAELKKVKSSFPS-NAL 645 (718)
Q Consensus 568 ~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~v~~~~tPL~kv~~gk-~~~y~ys~~E~~~~~~~~~~-~~~ 645 (718)
+||||||||||||||||+||++|||||||||||+||++||||+|+||||||++|| ++.||||++|+++|++++.. +++
T Consensus 88 ~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~y~ys~~E~~~~~~~~~~~~~~ 167 (242)
T 3m4i_A 88 KLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKK 167 (242)
T ss_dssp GCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHHHTCC
T ss_pred ccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCcEEEecCceEEEEeCCccEEEeCCHHHHHHHHHHhhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999987531 233
Q ss_pred c----cceEeeccCCCChhhHHhhhcCccceeeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCccCCCC
Q 005028 646 Y----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 718 (718)
Q Consensus 646 ~----~ikryKGLGem~~~ql~ett~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~~~~~~~ld~ 718 (718)
| +||||||||||+|+|||||||||++|+|.||+++|+.+++++|++|||++|++||+||++|+.. +.+|||
T Consensus 168 ~~k~~~IqryKGLGEm~~~ql~ettmdp~~R~L~~V~i~d~~~a~~~f~~LMG~~v~~Rk~~I~~~~~~--~~~ld~ 242 (242)
T 3m4i_A 168 INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKD--VRFLDV 242 (242)
T ss_dssp CCTTTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHHHC-----------------------
T ss_pred cccccccceEcCcCCCCHHHHHHHhcCccceeeEEeccCcHHHHHHHHHHHhCCCcHHHHHHHHHHhhh--hhhccC
Confidence 5 9999999999999999999999999999999999999999999999999999999999999986 467875
No 11
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=100.00 E-value=7.1e-87 Score=726.80 Aligned_cols=344 Identities=30% Similarity=0.530 Sum_probs=312.3
Q ss_pred eccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCcEEEEECCCCccccccCCCCcccee
Q 005028 84 VLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALE 163 (718)
Q Consensus 84 ~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~isV~DnGrGIPv~~~~~~g~~~~E 163 (718)
.++.+|||||||||||||++.+||+|+|+||||||+||+++|+|+.|.|+|++||+|+|+|||||||+ |
T Consensus 8 ~~~~lE~vrkRPgmYiGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g~I~V~DnGrGIp~-----------e 76 (369)
T 3cwv_A 8 PGGIVENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTA-----------E 76 (369)
T ss_dssp -CCHHHHHHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCH-----------H
T ss_pred CccHhHHHHhCCceEEcCCCCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCCEEEEEECCCCcCH-----------h
Confidence 45669999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred eeeeeeccCCCCCCCC--CceeeccCccCCchhHHhhcccceEEEEEeCCEEEEEEEecCcc------cccceeeccCCC
Q 005028 164 TVLTVLHAGGKFGGSS--SGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP------VTTLTCHVLPVD 235 (718)
Q Consensus 164 ~v~t~lhag~kF~~~~--~~ykvSGGlhGvG~svvNalS~~~~V~v~r~gk~y~q~f~~G~~------~~~l~~~~~~~~ 235 (718)
++| ++||||||++.+ +.|++|| |+|+|||||++|+|+++|+|+.|.|+|++|++ +.++.++ +
T Consensus 77 ~v~-~lhagsKf~~~~~~~~y~vsG-----Gls~vnalSs~l~v~t~r~g~~~~~~~~~G~~~~~~~~~~~l~~~----g 146 (369)
T 3cwv_A 77 NLV-RVATGAGFLGRPPGDGWGWDS-----MLVVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPM----P 146 (369)
T ss_dssp HHH-HHHTTTTGGGSSCCCSTTTTS-----SHHHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCC----S
T ss_pred Hee-eeecCCCcCCCcccccccccC-----HHHHHHHhhceEEEEEEECCCEEEEEEeCCcccccccccCCceEe----c
Confidence 789 999999998722 3899995 79999999999999999999999999999998 6555432 3
Q ss_pred CCCCCceEEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecccHHHHHHHHhcCCC
Q 005028 236 SKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315 (718)
Q Consensus 236 ~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~~~~ 315 (718)
...++||+|+|+||+++|+ +..++++.|.+||+++|++|||++|+|+|++.+ ..+.|+|++||++||.+++.+++
T Consensus 147 ~~~~~GT~V~f~Pd~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~~ 221 (369)
T 3cwv_A 147 VSAERGVRVHFVPDATIFE-VLAFDRARLSRRCNELAALAPGLRVSFADLQRG----ERTLWHLPGGVAQWAHVLTEARP 221 (369)
T ss_dssp SCCSEEEEEEEEECTTTCS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEEECTTHHHHHHHHHHTTSC
T ss_pred ccCCCCCEEEEEECHHHhC-CccccHHHHHHHHHHHcCcCCCcEEEEEeCCCC----eeEEEEeCchHHHHHHHHhcCCc
Confidence 3457999999999999995 457999999999999999999999999999853 35789999999999999999888
Q ss_pred CCC-CeeEEEeccCceEEEEEEEecCCCCCceeeeeccceecCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHH
Q 005028 316 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 394 (718)
Q Consensus 316 ~l~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~alt~~in~~~kk~~~~k~k~~~l~~~ 394 (718)
+++ +++++..+.+++.||+|++|+ ++|++.++||||+|+|.+||||++||++||++++++|++ +++.+++++
T Consensus 222 ~~~~~~i~~~~~~~~i~ve~a~~~~-~~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k------~~~~~l~~~ 294 (369)
T 3cwv_A 222 QLHPEPVVFDFTWDGLRVQCALQWC-EDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG------ETRGAFPWA 294 (369)
T ss_dssp BSSSSCEEEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT------CCGGGSCHH
T ss_pred ccCCCcEEEEEecCCEEEEEEEEec-CCCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHh------hcCCCcCHH
Confidence 887 678888888899999999998 789999999999999999999999999999999999993 234579999
Q ss_pred HHhhccEEEEEEeecCCC--CCCccccccCCchhhhhhhhhHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 005028 395 HVREGLTCIISVRVPNPE--FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 460 (718)
Q Consensus 395 dIregL~~vVsvki~nP~--FegQTKekL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ 460 (718)
||||||++||||+++||+ |+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.++
T Consensus 295 dvregl~avisvk~~~P~~~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~ 362 (369)
T 3cwv_A 295 RVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE 362 (369)
T ss_dssp HHTTTEEEEEEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC-----
T ss_pred HHhhccEEEEEeccCCcchhccccccchhcCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 999999999999999999 999999999999999999999999999999999999999999998764
No 12
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=2.4e-86 Score=763.15 Aligned_cols=256 Identities=43% Similarity=0.699 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCceEEEeeccCCCccccccCCCCceEecccCcccc
Q 005028 453 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 532 (718)
Q Consensus 453 ~~k~~~~~kar~aakkar~~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiL 532 (718)
+++++.+++||++++++ .+||+.+....|||||+||++++|++|||||||||||||||||||||+||||||||||||
T Consensus 1 ~~k~~~~~~ar~~~~~~---~~rk~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSAgGsak~gRdr~~qailPLRGKiL 77 (767)
T 2xkj_E 1 MEMAISKAGRRLKAAKK---VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKIL 77 (767)
T ss_dssp ---------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCC
T ss_pred ChHHHHHHHHHHHHHHH---hhhccccccccCcHhhHhcccCCCcceEEEEeeCCCCcchhhhcCCcccccccccccchh
Confidence 35778888888855443 346778888899999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHhhChhHHHHHHHhcCCccCCcCcccccceeeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEec
Q 005028 533 NVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612 (718)
Q Consensus 533 Nv~ka~~~ki~~N~Ei~~li~~lG~~~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~v~~~~ 612 (718)
|||+|+.+||++|+||++|++|||||++. .|+++||||||||||||||||+||+||||||||||||+||++||||+|+
T Consensus 78 Nv~ka~~~ki~~n~Ei~~i~~alG~~~g~--~~~~~lRY~kiiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~a~ 155 (767)
T 2xkj_E 78 NTWEVSSDEVLASQEVHDIAIAIGVDPGS--DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAM 155 (767)
T ss_dssp CCTTSCTTTGGGSHHHHHHHHHHTCCTTC--CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEEC
T ss_pred hhhcCCHHHHhccHHHHHHHHHhCCCccc--ccccccccceEEEeecCCCCcchhhHHHHHHHHHHhHHHHhcCcEEEec
Confidence 99999999999999999999999999853 3999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCeEEEeeCHHHHHHHHHhCCCCCcccceEeeccCCCChhhHHhhhcCccceeeeeeccccHHHHHHHHHHh
Q 005028 613 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 692 (718)
Q Consensus 613 tPL~kv~~gk~~~y~ys~~E~~~~~~~~~~~~~~~ikryKGLGem~~~ql~ett~dp~~r~l~~v~~~d~~~~~~~f~~l 692 (718)
||||||++||++.||||++|+++|++++++.++|+||||||||||||+|+|||||||++|+|.+|+++|+.+++++|++|
T Consensus 156 pPl~kv~~gk~~~y~~~~~e~~~~~~~~~~~~~~~IqRYKGLGEmnp~ql~ETtmdp~~R~L~~v~i~da~~ad~~f~~l 235 (767)
T 2xkj_E 156 PPLFRIDIGKDVHYALDDEELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKL 235 (767)
T ss_dssp CCSEEEEETTEEEEESSHHHHHHHHHTCCSSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHHHHHH
T ss_pred CCEEEEEECCEEEeeeCHHHHHHHHHHhhcCCCCceecccCCCCCCHHHHhHhhcCccceEEEEEEcccHHHHHHHHHHH
Confidence 99999999999999999999999999986556799999999999999999999999999999999999999999999999
Q ss_pred cCC-CchHHHHHHHhccccCCc
Q 005028 693 MGA-RVDTRKELIQNAANLVNL 713 (718)
Q Consensus 693 mg~-~~~~RK~~i~~~~~~~~~ 713 (718)
||+ +|++||+||++++..+++
T Consensus 236 mgkk~ve~RKewI~~~~~~~~~ 257 (767)
T 2xkj_E 236 LAKKRAADRKQWLEQKGNLADI 257 (767)
T ss_dssp HCGGGHHHHHHHHHHHGGGCC-
T ss_pred hCCCCchHHHHHHHhcCccccc
Confidence 998 699999999999875433
No 13
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=1.8e-76 Score=674.12 Aligned_cols=229 Identities=28% Similarity=0.451 Sum_probs=212.6
Q ss_pred CCCCCCCCCCC---CCCCCCceEEEeeccCCCccccccCC---CCceEecccCcccccccccCHHHHhhChhHHHHHHHh
Q 005028 482 SSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 555 (718)
Q Consensus 482 ~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gsak~gRd---r~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~~l 555 (718)
.++| ||+||+ +++|++|||||||||||||||||||+ |+||||||||||||||++++.++|++|+||++|++||
T Consensus 4 ~g~~-KL~Dc~~a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~i~~al 82 (757)
T 3l4j_A 4 TNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIM 82 (757)
T ss_dssp CSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHT
T ss_pred CCCc-CccccccccCCCccceEEEEeecccchhhHhhcccccCcccccccccCCcccchhhccHHHhhcCHHHHHHHHHh
Confidence 3577 999996 79999999999999999999999884 8899999999999999999999999999999999999
Q ss_pred cCCccCCcCcccccceeeEEEeecCCCCCchhhhhHHHHHHHHHHHhhh-cCcEEEecCCeEEEE---eCCeEEEeeCHH
Q 005028 556 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVE---RGKQVQYCYDDA 631 (718)
Q Consensus 556 G~~~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~-~G~v~~~~tPL~kv~---~gk~~~y~ys~~ 631 (718)
|||++.+.+|+++||||||||||||||||+||++|||||||||||+||+ +||||+|+||||||+ +||+++|||+++
T Consensus 83 G~~~g~~~~~~~~lRY~kiiImtDaD~DG~HI~~Llltff~r~~p~Li~~~G~vy~~~~Pl~kv~~~~~gk~~~~~ys~~ 162 (757)
T 3l4j_A 83 GLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMP 162 (757)
T ss_dssp TCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHH
T ss_pred CCCcCcccccccccCcceEEEecCcccccccchhHHHHHHHHHhHHHhccCCEEEEecCceEEEeeccCCcceEEecCHH
Confidence 9999666579999999999999999999999999999999999999999 899999999999999 799999999999
Q ss_pred HHHHHHHhCCCCCcccceEeeccCCCChhhHHhhh--cCccceeeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccc
Q 005028 632 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT--LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN 709 (718)
Q Consensus 632 E~~~~~~~~~~~~~~~ikryKGLGem~~~ql~ett--~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~ 709 (718)
|+++|+++++..++|+||||||||||+|+|+|||| |||++|.|.+++++|+..++++|+ .++|++||+||++|++
T Consensus 163 E~~~~~~~~~~~~~~~iqryKGLGem~~~ql~e~f~~m~~~~r~l~~~~~~d~~~~d~~f~---~~~~~~Rk~wi~~~~~ 239 (757)
T 3l4j_A 163 DYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFS---KKKADDRKEWLRQYEP 239 (757)
T ss_dssp HHHHHHHHTGGGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTTHHHHHHHHHC---TTCHHHHHHHHHHCCT
T ss_pred HHHHHHHHhccCCCCccceecCcCcCCHHHHHHHhcCcCceeEEEEecCccHHHHHHHHhC---cCcchHHHHHHHhcCC
Confidence 99999998764567999999999999999999975 669899999999999887777776 3689999999999999
Q ss_pred cCCcc
Q 005028 710 LVNLD 714 (718)
Q Consensus 710 ~~~~~ 714 (718)
..+++
T Consensus 240 ~~~ld 244 (757)
T 3l4j_A 240 GTVLD 244 (757)
T ss_dssp TCCCC
T ss_pred ccccc
Confidence 87665
No 14
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=8.6e-76 Score=669.16 Aligned_cols=221 Identities=34% Similarity=0.534 Sum_probs=157.4
Q ss_pred CCCCCCCCCC---CCCCCCCceEEEeeccCCC-----ccccccCCCCceEecccCcccccccccCHHHHhhChhHHHHHH
Q 005028 482 SSLPGKLADC---SSTTPEESEIFIVEGDSAG-----GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 553 (718)
Q Consensus 482 ~~lpgKL~Dc---~~~~~~~~eL~lvEGDSA~-----Gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~ 553 (718)
.++| ||+|| +++||++|||||||||||| ||||||||| ||||||||||||||+++.++|++|+||++||+
T Consensus 34 ~~lp-KL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr--~ailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~ 110 (803)
T 3qx3_A 34 KGIP-KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIK 110 (803)
T ss_dssp CCCT-TCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTT--EEEEEECSSCCCCTTCCHHHHHHCHHHHHHHH
T ss_pred CCCC-ccccccccccCChhheEEEEecCCcchhhhhcccceecccc--cccccccCcchhhhhccHHHHhcCHHHHHHHH
Confidence 4678 99999 5899999999999999999 999999999 89999999999999999999999999999999
Q ss_pred HhcCCccCC---cCcccccceeeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCH
Q 005028 554 ALGLGVKGE---DFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 630 (718)
Q Consensus 554 ~lG~~~~~~---~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~v~~~~tPL~kv~~gk~~~y~ys~ 630 (718)
|||||++.+ .+|+++||||||||||||||||+||++|||||||||||+||+.||||+|+||||||++||++.||||+
T Consensus 111 alG~g~g~~~~~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~~ys~ 190 (803)
T 3qx3_A 111 IVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSI 190 (803)
T ss_dssp HHTCCTTCCCCSTTGGGGCSCSEEEEECCSSHHHHHHHHHHHHHHHHHCGGGGGTTCEEEECC-----------------
T ss_pred HhCCCcCccccccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCeEEEecCceEEEecCCeeEEEecH
Confidence 999999543 25899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcccceEeeccCCCChhhHHhhhcCcc-ceeeeeec-cccHHHHHHHHHHhcCCCchHHHHHHHhcc
Q 005028 631 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPE-QRMLKQLV-IEDAAEANVVFSSLMGARVDTRKELIQNAA 708 (718)
Q Consensus 631 ~E~~~~~~~~~~~~~~~ikryKGLGem~~~ql~ett~dp~-~r~l~~v~-~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~ 708 (718)
+|+++|++++...++|+||||||||||+|+|+|||||||. +|.+.+++ .+|...++++|+ |++|++||+||++|+
T Consensus 191 ~e~~~~~~~~~~~~~~~iqryKGLGem~~~el~ettmd~~~~r~~~~~~~~~d~~~~d~~F~---k~~~~~RK~wi~~~~ 267 (803)
T 3qx3_A 191 PEFDEWKKHIENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFS---KKKIDDRKEWLTNFM 267 (803)
T ss_dssp -----------------------------CHHHHHHHTHHHHEEEEECCSHHHHHHHHHHHC---GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcccccccccCCCCHHHHHHHhcCcccceEEEEeCCcchHHHHHHHhc---CCChHHHHHHHHHhh
Confidence 9999999887555679999999999999999999999986 55555565 244444455554 567999999999998
No 15
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=1.9e-72 Score=640.99 Aligned_cols=197 Identities=60% Similarity=0.988 Sum_probs=185.7
Q ss_pred cCCCCCCCCCCCCCCCCCceEEEeeccCCCccccccCCCCceEecccCcccccccccCHHHHhhChhHHHHHHHhcCCcc
Q 005028 481 SSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK 560 (718)
Q Consensus 481 ~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~~lG~~~~ 560 (718)
..+|||||+||+++++++|||||||||||||||||||||+|||||||||||||||+++.+||++|+||++|++|||||+
T Consensus 3 ~~~lpgkl~dc~~~~~~~~eL~lvEGDSA~Gsak~gRd~~~qai~PLrGKiLNv~~a~~~~i~~n~Ei~~i~~alG~~~- 81 (692)
T 2xcs_B 3 VASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI- 81 (692)
T ss_dssp ------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSCC-
T ss_pred CCCCCchhhcCCCCCcccceEEEecCCcccCcccccccccccccccccCcccchhhCcHHHhhccHHHHHHHHHhCCCc-
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcCcccccceeeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCHHHHHHHHHhC
Q 005028 561 GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSF 640 (718)
Q Consensus 561 ~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~v~~~~tPL~kv~~gk~~~y~ys~~E~~~~~~~~ 640 (718)
+.+||+++||||||||||||||||+||+||||||||||||+||++||||+++||+
T Consensus 82 g~~~~~~~lrY~kiiImTDaD~DGsHI~~Llltff~r~~~~Li~~g~vyia~pP~------------------------- 136 (692)
T 2xcs_B 82 GGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPT------------------------- 136 (692)
T ss_dssp GGGCCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCCS-------------------------
T ss_pred CccccccccccceEEEeecCCCCcchhhhHHHHHHHHhChHHhhcCeeEEecCch-------------------------
Confidence 4669999999999999999999999999999999999999999999999999994
Q ss_pred CCCCcccceEeeccCCCChhhHHhhhcCccceeeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCC
Q 005028 641 PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVN 712 (718)
Q Consensus 641 ~~~~~~~ikryKGLGem~~~ql~ett~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~~~~ 712 (718)
||||||||+|+|+|||||||++|+|.+|+++|+.+++++|++|||+++++||+||++|+...+
T Consensus 137 ---------~yKGLGem~~~ql~et~m~p~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~~~ 199 (692)
T 2xcs_B 137 ---------GYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYAN 199 (692)
T ss_dssp ---------SCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHHHHHHHHHHHSSCHHHHHHHHHHHCCCCC
T ss_pred ---------hhcccccCCHHHHHHHhcCccceeEEEEecCchhhHHHHHHHHcCCCchHHHHHHHhcCCccc
Confidence 799999999999999999999999999999999999999999999999999999999987643
No 16
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=100.00 E-value=1.6e-66 Score=528.83 Aligned_cols=217 Identities=50% Similarity=0.868 Sum_probs=183.3
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCC-CchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCcEEEEECCCCccccc
Q 005028 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153 (718)
Q Consensus 75 ~~Y~~~~i~~L~~lE~VrkRPgMYIGs~~~-~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~isV~DnGrGIPv~~ 153 (718)
.+|++++||+|+++|||||||||||||++. +||+|+|+|||+||+||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 3 ~~y~~~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g~i~V~DnGrGIp~~~ 82 (220)
T 4duh_A 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGI 82 (220)
T ss_dssp ------------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTSCEEEEECSSCCCCSE
T ss_pred CccChhHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcEEEEECCcCccccc
Confidence 379999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEEeCCEEEEEEEecCcccccceeeccC
Q 005028 154 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLP 233 (718)
Q Consensus 154 ~~~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~gk~y~q~f~~G~~~~~l~~~~~~ 233 (718)
||++|+|++|+|||+|||||||+++ .|++|||+||||+|+|||||++|+|+++|+|+.|+|+|++|+++.++..+
T Consensus 83 ~~~~~~~~~e~i~t~lhag~Kfd~~--~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~~--- 157 (220)
T 4duh_A 83 HPEEGVSAAEVIMTVLHAGGKFDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT--- 157 (220)
T ss_dssp ETTTTEEHHHHHHHSTTCSSCCCTT--C--------CCCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSSCEEE---
T ss_pred ccccCcchhhheeeecccCCCcCCC--ccccccCccceecchhcccccceEEEEEECCEEEEEEecCCcCcCCceec---
Confidence 9999999999999999999999987 89999999999999999999999999999999999999999999887654
Q ss_pred CCCCCCCceEEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecc
Q 005028 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 301 (718)
Q Consensus 234 ~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~ 301 (718)
+...++||+|+|+||+++|.....|+++.|.+||+++|||||||+|+|+|+|.+ +.++|||+|
T Consensus 158 -g~~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~~~y~g 220 (220)
T 4duh_A 158 -GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG----KEDHFHYEG 220 (220)
T ss_dssp -EECSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTTC----CEEEEC---
T ss_pred -cccCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccCCC----cEEEEEcCC
Confidence 335679999999999999975447999999999999999999999999999964 457899975
No 17
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=100.00 E-value=4.3e-65 Score=519.63 Aligned_cols=218 Identities=51% Similarity=0.848 Sum_probs=181.8
Q ss_pred CCCCCcccceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCcEEEEECCCCccccc
Q 005028 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153 (718)
Q Consensus 74 ~~~Y~~~~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~isV~DnGrGIPv~~ 153 (718)
-++|++++||+|+++|||||||||||||++.+||+|+|+|||+||+||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 8 ~~~y~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g~i~V~DnG~GIp~~~ 87 (226)
T 4emv_A 8 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGM 87 (226)
T ss_dssp ---------CCCBCTHHHHHCHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred hhcCChhhcEEcchhHHHhhCCceEEcCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCeEEEEEcCCCccccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEEeCCEEEEEEEecC-cccccceeecc
Q 005028 154 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVL 232 (718)
Q Consensus 154 ~~~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~gk~y~q~f~~G-~~~~~l~~~~~ 232 (718)
| ++|+|++|+|||+|||||||+++ .|++|||+||||+|+|||||++|+|+++|+|+.|.|+|++| +++.+++.+.
T Consensus 88 h-~~~~~~~e~v~t~lhag~Kfd~~--~yk~SgGlhGvG~svvNALS~~l~v~v~r~g~~~~q~f~~Gg~~~~~l~~ig- 163 (226)
T 4emv_A 88 H-AMGIPTVEVIFTILHAGGKFGQG--GYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIG- 163 (226)
T ss_dssp C-GGGCBHHHHHHHCBC----------------CGGGCCHHHHHHTEEEEEEEEEETTEEEEEEEETTTEESSCSEEEE-
T ss_pred c-ccCceehheeEEeecccCccCcc--ceEeccccccccchhhhhcccceEEEEEeCCcEEEEEECCCCEEcCCceEec-
Confidence 9 89999999999999999999987 89999999999999999999999999999999999999999 8888876541
Q ss_pred CCCCCCCCceEEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecc
Q 005028 233 PVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 301 (718)
Q Consensus 233 ~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~ 301 (718)
+ ....++||+|+|+||+++|++ ..|++++|.+||+++|||||||+|+|+|+|.+ +.++|||+|
T Consensus 164 ~-~~~~~~GT~V~F~PD~~iF~~-~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~f~y~g 226 (226)
T 4emv_A 164 T-ALKSKTGTKVTFMPDATIFST-TDFKYNTISERLNESAFLLKNVTLSLTDKRTD----EAIEFHYEN 226 (226)
T ss_dssp E-CCTTCCEEEEEEEECTTTCSC-CCCCHHHHHHHHHHHHHHHCSCEEEEEETTTC----CEEEECCCC
T ss_pred c-cCCCCCCeEEEEEECHHHcCC-CCcCHHHHHHHHHHHhhcCCCCEEEEEecCCC----cEEEEEcCC
Confidence 0 112679999999999999975 57999999999999999999999999999964 357899975
No 18
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=100.00 E-value=7.4e-56 Score=444.07 Aligned_cols=197 Identities=53% Similarity=0.845 Sum_probs=179.5
Q ss_pred CCcccceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCcEEEEECCCCccccccCC
Q 005028 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 156 (718)
Q Consensus 77 Y~~~~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~isV~DnGrGIPv~~~~~ 156 (718)
|++++||+|+++|||||||||||||++.+||+|+|+|||+||+||+++|+|+.|.|+|+.+|+|+|+|||||||++.|+.
T Consensus 2 y~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g~i~V~DnG~Gip~~~h~~ 81 (198)
T 3ttz_A 2 YGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 81 (198)
T ss_dssp CCHHHHHHHHHHHHHHHSHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGGEEEEEECSSCCCCSBCTT
T ss_pred CChhHeEEecchHHHhcCCCcEECCCCCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCCeEEEEECCCCccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEEeCCEEEEEEEecCcccccceeeccCCCC
Q 005028 157 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDS 236 (718)
Q Consensus 157 ~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~gk~y~q~f~~G~~~~~l~~~~~~~~~ 236 (718)
+|++.+|++|| +|||||||++|+|+++|+|+.|.|+|++|+++.++..+ +.
T Consensus 82 ~~~~~~e~i~t-------------------------~SvVNALS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~i----~~ 132 (198)
T 3ttz_A 82 MGRPAVEVILT-------------------------SSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEV----GT 132 (198)
T ss_dssp TSSBHHHHHHH-------------------------TCHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE----EE
T ss_pred CCCccccccce-------------------------eEehhhhcCeEEEEEEECCcEEEEEEeCCEECCCceec----cC
Confidence 99999999986 99999999999999999999999999999999887654 33
Q ss_pred CCCCceEEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecccH
Q 005028 237 KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGL 303 (718)
Q Consensus 237 ~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~Gl 303 (718)
..++||+|+|+||+++|..+..|+++.|.+||+++|||||||+|+|+|++.+.+ .+.++|||+|||
T Consensus 133 ~~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~-~~~~~f~~~gGi 198 (198)
T 3ttz_A 133 TDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEEN-VREDSYHYEGGI 198 (198)
T ss_dssp CSCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSSTTS-CEEEEECCC---
T ss_pred CCCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEeecCCCC-cceEEEEcCCCC
Confidence 467999999999999993245799999999999999999999999999996421 135789999996
No 19
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=100.00 E-value=1.3e-53 Score=429.34 Aligned_cols=201 Identities=43% Similarity=0.756 Sum_probs=164.4
Q ss_pred chhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCcEEEEECCCCccccccCCCCccceeeee
Q 005028 87 GLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVL 166 (718)
Q Consensus 87 ~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~isV~DnGrGIPv~~~~~~g~~~~E~v~ 166 (718)
|||||||||||||||+++ +|+|+|||+||+||+++|+|+.|.|+|+.+|+|+|+|||+|||++.||++|+|++|++|
T Consensus 1 gle~vr~rpgmyig~~~~---~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~ 77 (201)
T 3fv5_A 1 GLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELIL 77 (201)
T ss_dssp CCHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTTCSSBHHHHHH
T ss_pred CchhhccCCccEECCCCh---hhhhHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCcCcccccccCcchhheee
Confidence 699999999999999876 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCCCceeeccCccCCchhHHhhcccceEEEEEeCCEEEEEEEecCcccccceeeccCCCCCCCCceEEEE
Q 005028 167 TVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246 (718)
Q Consensus 167 t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~gk~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F 246 (718)
+++||||||+++ .|++|+|+||+|++++||||++|+|+++++|+.|.|+|++|+++.++..+.. ....++||+|+|
T Consensus 78 ~~~hatsK~~~~--~~~~s~GfrGeglssinalS~~l~v~t~~~g~~~~~~~~~G~~~~~~~~~g~--~~~~~~GT~V~f 153 (201)
T 3fv5_A 78 CRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGT--CGKRNTGTSVHF 153 (201)
T ss_dssp HCC-----------------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEE--CCTTCCEEEEEE
T ss_pred eeeccccCcCCC--cccccCcccceecchhhcccceEEEEEEecCceEEEEEeCCEEcccceeccc--CCCCCCCeEEEE
Confidence 999999999987 8999999999999999999999999999999999999999999877654310 112579999999
Q ss_pred EeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEe
Q 005028 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 299 (718)
Q Consensus 247 ~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~ 299 (718)
+||+++|++ ..++++.|.+||+++|++||||+|+|++++.+ +.++|||
T Consensus 154 ~Pdr~~F~~-~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~~----~~~~~~y 201 (201)
T 3fv5_A 154 WPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCY 201 (201)
T ss_dssp EECGGGSSC-CCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECC
T ss_pred EECHHHcCC-CccCHHHHHHHHHHHHHhCCCCEEEEEecCCC----cEEEEEC
Confidence 999999964 57999999999999999999999999999964 3567876
No 20
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=5.7e-40 Score=377.26 Aligned_cols=303 Identities=19% Similarity=0.208 Sum_probs=239.0
Q ss_pred cceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHh-cCCCCeEEEEEeCCC----cEEEEECCCCccccccC
Q 005028 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQ-AGYASNIEVALLADN----SVSVADNGRGIPIDLHP 155 (718)
Q Consensus 81 ~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~-ag~~~~I~V~l~~dg----~isV~DnGrGIPv~~~~ 155 (718)
+.+.++-.++++++|+||....+..+|+++++|||+||+|+.. +|+++.|.|+++.++ .|+|+|||+|||.+.++
T Consensus 12 ~~k~isi~~~~~~~~~~~~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~ 91 (621)
T 2q2e_B 12 KQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIP 91 (621)
T ss_dssp CCCCSCSHHHHHHSTTTSSCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHH
T ss_pred HhhcCceEEEecCCCceeEEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHH
Confidence 4566777899999999997777789999999999999999998 678889999998765 69999999999998765
Q ss_pred CCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccce-----EEEEEeCC--EEEEEEE----ecCccc
Q 005028 156 ATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL-----EVTVWRDG--MEYHQKY----SRGKPV 224 (718)
Q Consensus 156 ~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~-----~V~v~r~g--k~y~q~f----~~G~~~ 224 (718)
. +|+.+|+|++|.. ++.++|.||+|++++|++|+.+ +|++.++| ..++++| .+|.+.
T Consensus 92 ~--------iF~~~~atskf~~----~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~ 159 (621)
T 2q2e_B 92 K--------VFAKLLYGSRFHA----LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPD 159 (621)
T ss_dssp H--------HHSCCCCC--CCC----CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCC
T ss_pred H--------HhhhhccCCcccc----ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccc
Confidence 3 8999999999974 4688999999999999999996 99998876 7899999 777776
Q ss_pred ccceeeccCCCCCCCCceEEEEEeCccccccccccCH---HHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecc
Q 005028 225 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH---NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 301 (718)
Q Consensus 225 ~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~---~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~ 301 (718)
...... ......+||+|+|+ |.. .++. +.|.+||+++|++|||++|+|++++. +.|+|++
T Consensus 160 ~~~~~~---~~~~~~~GT~V~~~-----f~~--~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~~-------~~~~~~g 222 (621)
T 2q2e_B 160 ILVDEV---RDWFRPHGTQIELE-----MRA--AYVKGRRQSIYEYLKATAIVNPHARITLIDPDG-------NEEVFER 222 (621)
T ss_dssp CCCEEE---CCCSCSSCCCEEEE-----CSC--CCCCCSSSSSHHHHHHHHHHCCSCEEEECCTTS-------CCEEEEC
T ss_pred cccccc---ccCCCCCCCEEEEE-----ecC--ccchHHHHHHHHHHHHHHhhCCCCEEEEEECCc-------eEEEeCC
Confidence 522111 12345799999999 532 2444 78999999999999999999999863 5799999
Q ss_pred cHHHHHHHHhcCCCCCCCeeEEEeccCceEEEEEEEecCCCCCceeeeeccceecCCCcchHHHHHHHHHHHHHHHHhhc
Q 005028 302 GLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS 381 (718)
Q Consensus 302 Gl~dyv~~l~~~~~~l~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~alt~~in~~~kk~ 381 (718)
|+ .+++....++++.++ +...+ .++++++|+ ++| ++.||||+|+|.+|| +++|+|+++.
T Consensus 223 g~----~~L~~~~~~i~p~~~--G~~~~-~~eval~~~-~~~--~i~sFvN~i~T~~GG-----------r~in~~~~~~ 281 (621)
T 2q2e_B 223 AT----DKMPEPAEEILPHPE--GIELG-TLMKMLHYT-ERQ--KLAPFLRYSFCKIGL-----------LTAEEICKAA 281 (621)
T ss_dssp CC----CCCCCCCCCCCCCST--TCCHH-HHHHHHHHC-C-------CTTSSSSCC--C-----------HHHHHHHHTT
T ss_pred cc----cchhcccccccCCce--eeccC-eEEEEEeeC-CCe--EEEEEeCCcccCCCH-----------HHHHHHHHHh
Confidence 87 344555555553221 11122 467889987 677 599999999999999 6788999998
Q ss_pred cCCCC-CCCCCCHHHHhhccEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHh
Q 005028 382 KTVKD-KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLE 443 (718)
Q Consensus 382 ~~~k~-k~~~l~~~dIregL~~vVsvki~nP~FegQTKekL~n~ev~~~v~~~v~~~l~~~l~ 443 (718)
++.|+ ++.+++++|||+||++|+||+++||+|+ +++.+++..+.+.|.+||.
T Consensus 282 ~l~k~~~~~~lt~dDiregL~avisvki~~Pqtk----------~l~pige~~i~~~l~~~~~ 334 (621)
T 2q2e_B 282 GLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTD----------CLSPIGEDLIYRGLEKETT 334 (621)
T ss_dssp TCCTTSCSSSCCSSSSTTTTHHHHTSCCSCCCST----------TCCCCCHHHHHHHHHHHSC
T ss_pred CccccccCCCCCHHHHHhhcEEEEEEECCCCCcc----------ccChhHHHHHHHHHHHhcC
Confidence 88776 5678999999999999999999999755 6778888999999999884
No 21
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.92 E-value=1.2e-26 Score=263.35 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=201.2
Q ss_pred ccceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCC-CCeEEEEEeCCC------cEEEEECCCCcccc
Q 005028 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY-ASNIEVALLADN------SVSVADNGRGIPID 152 (718)
Q Consensus 80 ~~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~-~~~I~V~l~~dg------~isV~DnGrGIPv~ 152 (718)
++++.++..|+++++|+||+.+.+...|++++.|+|+||+|+...|. ...|.|.+..++ .|+|.|||+|||.+
T Consensus 5 ~~~k~isi~eff~~~~~l~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e 84 (530)
T 2zbk_B 5 EKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 84 (530)
T ss_dssp ---------CGGGTCCGGGTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred HHhhhcChhheeecCCCceEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHH
Confidence 45677888899999999998887778999999999999999986542 237999888655 69999999999988
Q ss_pred ccCCCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhccc-----ceEEEEEeCCE--EEEEEEe--c---
Q 005028 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSE-----SLEVTVWRDGM--EYHQKYS--R--- 220 (718)
Q Consensus 153 ~~~~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~-----~~~V~v~r~gk--~y~q~f~--~--- 220 (718)
..+ .+|..+++++|+. ++.++|.+|+|+++++.+++ .++|++..++. .+..++. -
T Consensus 85 ~l~--------~iF~~f~~tsk~~-----~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~ 151 (530)
T 2zbk_B 85 EVP--------NAFGRVLYSSKYV-----NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKN 151 (530)
T ss_dssp GSH--------HHHTSCCCSCCCC-----CSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTT
T ss_pred HHH--------HHhccccccCCcc-----cccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEeccccc
Confidence 654 3788888888873 24567889999999999998 68888877553 3443332 1
Q ss_pred CcccccceeeccCCCCCCCCceEEEEEeCccccccccccCH-HHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEe
Q 005028 221 GKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 299 (718)
Q Consensus 221 G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~-~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~ 299 (718)
+....+.... + .....+||+|+++ |..+ .... ..+.++++++|++||+++|.|.+... +.|++
T Consensus 152 ~g~~~~~~~~--~-~~~~~~GT~V~v~-----l~~~-~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~~-------~~~~~ 215 (530)
T 2zbk_B 152 EPIIVERGSV--E-NTRGFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDPEG-------NVTYY 215 (530)
T ss_dssp EEEEEEEEEE--E-CCSSCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCCEEEECTTS-------CEEEE
T ss_pred CCcccccccc--C-CCCCCCCcEEEEE-----eccc-hhhHHHHHHHHHHHHHHHCCCcEEEEEECCC-------eEEEe
Confidence 1111111111 0 1235789999999 4332 2344 78999999999999999999998642 46777
Q ss_pred cccHHHHHHHHhcCCCCCCC-eeEEEeccCceEEEEEEE-ecCCCCCc-eeeeeccceecCCCcchHHHHHHHHHHHHHH
Q 005028 300 AGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQ-WCSDAYSD-TMLGYANSIRTIDGGTHIEGVKASLTRTLNS 376 (718)
Q Consensus 300 ~~Gl~dyv~~l~~~~~~l~~-~i~~~~~~~~~~veval~-~s~~~~~~-~~~SFVN~I~T~~GGTHv~g~~~alt~~in~ 376 (718)
++.. ..+++ +.....+..|+.++.+++ |. .++.. ++.+|+|+++|..||+|+++|++++
T Consensus 216 ~~~~-----------~~lp~~~~~~~~~~~Gi~~~~~l~~~~-~~~~~~~l~~fl~~~ft~~g~~~a~~~~~~~------ 277 (530)
T 2zbk_B 216 PRLT-----------NKIPKPPQEVKPHPYGVDREEIKILIN-NLKRDYTIKEFLVNEFQSIGDTTADKILELA------ 277 (530)
T ss_dssp CCCC-----------CCCCCCCCCCCCCGGGCCHHHHHHHHT-TCSSCCBHHHHHHTTSTTCCHHHHHHHHHHT------
T ss_pred cCcc-----------ccccCCcceeccCCCChhHHHHHHHHh-ccCCCceeHhhhcCccccccHHHHHHHHHhh------
Confidence 6631 11211 112223456777777777 54 56666 7899999999999999999999865
Q ss_pred HHhhccCCCCC-CCCCCHHHHhhccEEEEEEe-ecCCC
Q 005028 377 LGKKSKTVKDK-DISLSGEHVREGLTCIISVR-VPNPE 412 (718)
Q Consensus 377 ~~kk~~~~k~k-~~~l~~~dIregL~~vVsvk-i~nP~ 412 (718)
++.++. +.+++++|++++|.++++++ +++|.
T Consensus 278 -----gl~~~~~~~~l~~~~~~~ll~a~~~~k~~~~P~ 310 (530)
T 2zbk_B 278 -----GLKPNKKVKNLTEEEITRLVETFKKDEDFRSPS 310 (530)
T ss_dssp -----TCCSSCBSSCCCHHHHHHHHHHHHHCCCCCCCC
T ss_pred -----CCCCCCCcccCCHHHHHHHHHHHHhccCCCCCC
Confidence 444443 46899999999999999998 88776
No 22
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=210.03 Aligned_cols=284 Identities=13% Similarity=0.161 Sum_probs=186.8
Q ss_pred cccceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCc--EEEEECCCCccccccCC
Q 005028 79 SEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS--VSVADNGRGIPIDLHPA 156 (718)
Q Consensus 79 ~~~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~--isV~DnGrGIPv~~~~~ 156 (718)
+..|+.|+....-+.++|++|. .+.+++.|+|+||+|+ .++.|.|.++.+|. |+|.|||+|||.+..+.
T Consensus 6 ~~~I~~L~~~~~~~Iaagevi~-----~~~~vv~eLv~NAidA----~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~ 76 (348)
T 3na3_A 6 AGVIRRLDETVVNRIAAGEVIQ-----RPANAIKEMIENCLDA----KSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDI 76 (348)
T ss_dssp CCCCCCCCHHHHHHHHHHHHCC-----SHHHHHHHHHHHHHHT----TCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGT
T ss_pred ccccccCCHHHHHhhcccCccc-----CHHHHHHHHHHHHHHc----CCCEEEEEEEeCCEEEEEEEECCcCcChHHhhh
Confidence 3459999999999999999964 4789999999999998 37899999987664 99999999999987652
Q ss_pred CCccceeeeeeeeccCCCCCCCC-CceeeccCccCCchhHHhhcccceEEEEEeCC--EEEEEEEecCcccccceeeccC
Q 005028 157 TNKSALETVLTVLHAGGKFGGSS-SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYSRGKPVTTLTCHVLP 233 (718)
Q Consensus 157 ~g~~~~E~v~t~lhag~kF~~~~-~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g--k~y~q~f~~G~~~~~l~~~~~~ 233 (718)
++..|+++|+...+ -....|+|+||+|++++|++| +++|+++++| ..|.++|.+|.+..++.+.
T Consensus 77 ---------~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~--- 143 (348)
T 3na3_A 77 ---------VCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC--- 143 (348)
T ss_dssp ---------TTSTTCCSSCCCC---------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE---
T ss_pred ---------hhccccccccCcchhhhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe---
Confidence 45679999987532 233579999999999999999 7999999987 4799999999876544332
Q ss_pred CCCCCCCceEEEE------EeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEe--cccHHH
Q 005028 234 VDSKDRQGTRIRF------WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEE 305 (718)
Q Consensus 234 ~~~~~~~GT~V~F------~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~--~~Gl~d 305 (718)
..++||+|+| +|+...|-.+...+++.|.++++++|++||+++|.|.+.... ...|.. .+.+.+
T Consensus 144 ---~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~-----~~~~~~~~~~~~~~ 215 (348)
T 3na3_A 144 ---AGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGET-----VADVRTLPNASTVD 215 (348)
T ss_dssp ---CCCSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCS-----SCSEECCTTCCHHH
T ss_pred ---cCCCCcEEEECcccccCchhhhhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEE-----EEEeecCCCCCHHH
Confidence 3578999999 587776622334567889999999999999999999986421 112322 234555
Q ss_pred HHHHHhcCC--CCCCCeeEEEeccCceEEEEEEEecCCC-CCceeeeeccceecCCCcchHHHHHHHHHHHHHHHHhhcc
Q 005028 306 YVQWLNTDK--KPLHDVVGFRKDVDGITIDLALQWCSDA-YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSK 382 (718)
Q Consensus 306 yv~~l~~~~--~~l~~~i~~~~~~~~~~veval~~s~~~-~~~~~~SFVN~I~T~~GGTHv~g~~~alt~~in~~~kk~~ 382 (718)
=+..+-+.. ..+ -++....+..++.++.-+.-..-+ -...++-|||+-+-..- .|.++|++..+..
T Consensus 216 ~i~~i~G~~~~~~l-~~v~~~~~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~v~~~---------~l~~ai~~~y~~~- 284 (348)
T 3na3_A 216 NIRSIFGNAVSREL-IEIGCEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVEST---------SLRKAIETVYAAY- 284 (348)
T ss_dssp HHHHHHCHHHHTTE-EEEEEEEGGGTEEEEEEEECSSCCBSSCEEEEEETTEECCCT---------THHHHHHHHHHTT-
T ss_pred HHHHHhChHhHhhc-EEEEeecCCccEEEEEEEeCCccCCCcccEEEEECCeEecCH---------HHHHHHHHHHHHh-
Confidence 444443211 111 122332222235555333221111 12357899999775432 3455555443321
Q ss_pred CCCCCCCCCCHHHHhhccEEEEEEeecCCCCC
Q 005028 383 TVKDKDISLSGEHVREGLTCIISVRVPNPEFE 414 (718)
Q Consensus 383 ~~k~k~~~l~~~dIregL~~vVsvki~nP~Fe 414 (718)
+.+. ..=.+++++.++.-..|
T Consensus 285 -l~~~----------~~P~~~L~l~~~p~~vD 305 (348)
T 3na3_A 285 -LPKN----------THPFLYLSLEISPQNVD 305 (348)
T ss_dssp -SCTT----------CBCEEEEEEECC-----
T ss_pred -CcCC----------CceEEEEEEEeChhhee
Confidence 1110 13378888888755554
No 23
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.87 E-value=7.4e-22 Score=212.83 Aligned_cols=245 Identities=21% Similarity=0.239 Sum_probs=179.2
Q ss_pred cceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCC--cEEEEECCCCccccccCCCC
Q 005028 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATN 158 (718)
Q Consensus 81 ~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg--~isV~DnGrGIPv~~~~~~g 158 (718)
.|+.|+....-+-.+|..| ..+.+++.|+|+||+|+. ++.|.|.++.+| .|+|.|||.|||.+..+
T Consensus 4 ~I~~L~~~~~~~I~agevi-----~~~~~~v~ELi~NaidA~----a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~--- 71 (333)
T 1b63_A 4 PIQVLPPQLANQIAAGEVV-----ERPASVVKELVENSLDAG----ATRIDIDIERGGAKLIRIRDNGCGIKKDELA--- 71 (333)
T ss_dssp CCCCCCHHHHHHHHHHHHC-----SSHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGGHH---
T ss_pred cceECCHHHHHHHhcCCch-----hCHHHHHHHHHHHHHHCC----CCeEEEEEEeCCceEEEEEEcCCCcCHHHHH---
Confidence 4888888888888888886 468999999999999963 689999999765 69999999999988654
Q ss_pred ccceeeeeeeeccCCCCCCCCCce-eeccCccCCchhHHhhcccceEEEEEeCCE-EEEEEEecCccc-ccceeeccCCC
Q 005028 159 KSALETVLTVLHAGGKFGGSSSGY-SVSGGLHGVGLSVVNALSESLEVTVWRDGM-EYHQKYSRGKPV-TTLTCHVLPVD 235 (718)
Q Consensus 159 ~~~~E~v~t~lhag~kF~~~~~~y-kvSGGlhGvG~svvNalS~~~~V~v~r~gk-~y~q~f~~G~~~-~~l~~~~~~~~ 235 (718)
.+|+ .|+++|+.+.+..+ ..+.|++|+|+++++++| .++|+++++|. .+.+.|.+|... .+..+
T Consensus 72 -----~~~~-~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~------ 138 (333)
T 1b63_A 72 -----LALA-RHATSKIASLDDLEAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKP------ 138 (333)
T ss_dssp -----HHHS-TTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEE------
T ss_pred -----Hhhh-cccccCccccchhhhccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeec------
Confidence 2454 46788875310022 257899999999999999 69999998763 233346777652 22211
Q ss_pred CCCCCceEEEEE------eCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecc-----cHH
Q 005028 236 SKDRQGTRIRFW------PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG-----GLE 304 (718)
Q Consensus 236 ~~~~~GT~V~F~------PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~-----Gl~ 304 (718)
....+||+|+|+ |+...|-.....+++.|.++++.+|+++|+++|.|.+.. ...+.+++ ++.
T Consensus 139 ~~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng-------~~~~~~~~~~~~~~~~ 211 (333)
T 1b63_A 139 AAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNG-------KIVRQYRAVPEGGQKE 211 (333)
T ss_dssp ECCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT-------EEEEEECCCCTTCCTH
T ss_pred ccCCCCCEEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECC-------EEEEecCCCCCCchHH
Confidence 235689999999 887777323345668899999999999999999998742 23455543 688
Q ss_pred HHHHHHhcCCCCCCCeeEEEeccCceEEEEEEEecCC--CC-CceeeeeccceecCC
Q 005028 305 EYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSD--AY-SDTMLGYANSIRTID 358 (718)
Q Consensus 305 dyv~~l~~~~~~l~~~i~~~~~~~~~~veval~~s~~--~~-~~~~~SFVN~I~T~~ 358 (718)
+++..+.... ...+.+.+..+.+++.++..+.+... ++ ...++.|||+.+...
T Consensus 212 ~~i~~i~G~~-~~~~li~i~~~~~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~ 267 (333)
T 1b63_A 212 RRLGAICGTA-FLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRD 267 (333)
T ss_dssp HHHHHHHCHH-HHHHEEEEEEEETTEEEEEEEECGGGCCTTGGGCEEEEETTEECCC
T ss_pred HHHHHHhChh-hHhheEEEEecCCCEEEEEEEEcCccccCCCCCcEEEEECCEEecC
Confidence 8888765321 11134556666678889888887631 33 467999999999865
No 24
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=9.9e-21 Score=205.83 Aligned_cols=284 Identities=17% Similarity=0.181 Sum_probs=181.3
Q ss_pred cceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCC--cEEEEECCCCccccccCCCC
Q 005028 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATN 158 (718)
Q Consensus 81 ~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg--~isV~DnGrGIPv~~~~~~g 158 (718)
.|+.|+..-.-+.++|++|. .+.+++.|+|+||+|+. ++.|.|.+..+| .|+|.|||+|||.+.++.
T Consensus 5 ~I~~L~~~~~~~I~agevi~-----~~~~vv~eLv~NaiDA~----a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~-- 73 (367)
T 3h4l_A 5 QIHQINDIDVHRITSGQVIT-----DLTTAVKELVDNSIDAN----ANQIEIIFKDYGLESIECSDNGDGIDPSNYEF-- 73 (367)
T ss_dssp --------CTHHHHHHHHCC-----SHHHHHHHHHHHHHHTT----CSEEEEEEETTTTSEEEEEECSCCCCGGGTTT--
T ss_pred cceeCCHHHHHHhcCCCccc-----CHHHHHHHHHHHHHHCC----CCEEEEEEEeCCEEEEEEEECCCCcChhHhcc--
Confidence 48888888888888888854 47899999999999963 789999998666 799999999999987753
Q ss_pred ccceeeeeeeeccCCCCCCCC-CceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEe-cCcccccceeeccCCC
Q 005028 159 KSALETVLTVLHAGGKFGGSS-SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYS-RGKPVTTLTCHVLPVD 235 (718)
Q Consensus 159 ~~~~E~v~t~lhag~kF~~~~-~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~-~G~~~~~l~~~~~~~~ 235 (718)
++..|+++|+...+ -....|+|+||+|++++|++| .++|+++++| ..|.++|. +|.+.... +
T Consensus 74 -------~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-~------ 138 (367)
T 3h4l_A 74 -------LALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT-T------ 138 (367)
T ss_dssp -------TTCCEEC---------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-E------
T ss_pred -------ceeccccCcCCchhhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-c------
Confidence 35678888875421 234579999999999999999 5999999887 78999997 67765432 1
Q ss_pred CCCCCceEEEE------EeCccc-cccccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEec--ccHHHH
Q 005028 236 SKDRQGTRIRF------WPDKQV-FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA--GGLEEY 306 (718)
Q Consensus 236 ~~~~~GT~V~F------~PD~~i-F~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~--~Gl~dy 306 (718)
...++||+|+| +|+..+ |..+...+++.|.++++++|++||+++|.|.+..... .....|... +.+.+-
T Consensus 139 ~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~--~~~~~~~t~~~~~~~~~ 216 (367)
T 3h4l_A 139 TSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKG--KKNLILSTMRNSSMRKN 216 (367)
T ss_dssp ECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCSSCCHHHH
T ss_pred ccCCCCeEEEEchhhccCchhhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCC--cceEEEECCCCCCHHHH
Confidence 24578999999 577776 7333345678999999999999999999998742110 012234322 356666
Q ss_pred HHHHhcCCCCCC-CeeEEE---------------------eccCceEEEEEEEecC----CCCCceeeeeccceecCCCc
Q 005028 307 VQWLNTDKKPLH-DVVGFR---------------------KDVDGITIDLALQWCS----DAYSDTMLGYANSIRTIDGG 360 (718)
Q Consensus 307 v~~l~~~~~~l~-~~i~~~---------------------~~~~~~~veval~~s~----~~~~~~~~SFVN~I~T~~GG 360 (718)
+..+-...-.-. -++... .+..++.++.-+.-.. .+....++-|||+=+-..
T Consensus 217 i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~-- 294 (367)
T 3h4l_A 217 ISSVFGAGGMRGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEY-- 294 (367)
T ss_dssp HHHHHCTTTTTTEEEEEEEEECGGGCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECC--
T ss_pred HHHHhCHHHHhccEEEecccccccccccccccccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecC--
Confidence 655544321100 122220 0223455543332111 112345789999977543
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHhhccEEEEEEeecCCCCC
Q 005028 361 THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 414 (718)
Q Consensus 361 THv~g~~~alt~~in~~~kk~~~~k~k~~~l~~~dIregL~~vVsvki~nP~Fe 414 (718)
..|.++|++..+... + ...=.+++++.++.-.+|
T Consensus 295 -------~~l~~ai~~~y~~~~--~-----------~~~P~~~L~l~~~p~~vD 328 (367)
T 3h4l_A 295 -------STLLKCCNEVYKTFN--N-----------VQFPAVFLNLELPMSLID 328 (367)
T ss_dssp -------HHHHHHHHHHHHTTC--S-----------SCBCCEEEEEECCGGGEE
T ss_pred -------HHHHHHHHHHHHhcC--C-----------CCCcEEEEEEEcChHHcc
Confidence 356677766544322 1 123378888888755555
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.81 E-value=3.1e-19 Score=194.46 Aligned_cols=281 Identities=16% Similarity=0.219 Sum_probs=169.3
Q ss_pred ccceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCC--cEEEEECCCCccccccCCC
Q 005028 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPAT 157 (718)
Q Consensus 80 ~~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg--~isV~DnGrGIPv~~~~~~ 157 (718)
..|+.|+....-+.++|++| ..+.+++.|+|+||+|+. ++.|.|.+..+| .|+|.|||+|||.+..+.
T Consensus 13 ~~I~~L~~~~~~~i~agevi-----~~~~~vl~eLv~NAiDA~----a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~- 82 (365)
T 1h7s_A 13 KAIKPIDRKSVHQICSGQVV-----LSLSTAVKELVENSLDAG----ATNIDLKLKDYGVDLIEVSDNGCGVEEENFEG- 82 (365)
T ss_dssp ----------------CEEE-----CCHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGGSGG-
T ss_pred hhhccCCHHHHHHhcCCCch-----hhHHHHHHHHHHHHHHCC----CCEEEEEEEeCCcEEEEEEECCCCcCHHHHHH-
Confidence 35999999999999999996 457999999999999963 678999998654 799999999999987653
Q ss_pred CccceeeeeeeeccCCCCCCCCCcee-eccCccCCchhHHhhcccceEEEEEeCCE--EEEEEEe-cCcccccceeeccC
Q 005028 158 NKSALETVLTVLHAGGKFGGSSSGYS-VSGGLHGVGLSVVNALSESLEVTVWRDGM--EYHQKYS-RGKPVTTLTCHVLP 233 (718)
Q Consensus 158 g~~~~E~v~t~lhag~kF~~~~~~yk-vSGGlhGvG~svvNalS~~~~V~v~r~gk--~y~q~f~-~G~~~~~l~~~~~~ 233 (718)
+|. .|+++|+.+.+..|+ .+.|+||+|+++++++| +++|+++++|. .|.++|. +|......
T Consensus 83 -------~f~-~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~------ 147 (365)
T 1h7s_A 83 -------LTL-KHHTSKIQEFADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKT------ 147 (365)
T ss_dssp -------GGC-----------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEE------
T ss_pred -------Hhh-hccccccccccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeec------
Confidence 343 467778754222455 57899999999999999 99999998775 7899997 56553211
Q ss_pred CCCCCCCceEEEEEeCcccccc----------ccccCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEEecc--
Q 005028 234 VDSKDRQGTRIRFWPDKQVFTT----------AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG-- 301 (718)
Q Consensus 234 ~~~~~~~GT~V~F~PD~~iF~~----------~~~~d~~~i~~Rl~elA~LnpglkI~l~der~~~~~~~~e~f~~~~-- 301 (718)
.....+||+|+|+ ++|.. ....+++.|.++++++|++||+++|.|.+..... .....|..++
T Consensus 148 -~~~~~~GT~V~v~---~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~--~~~~~~~~~~~~ 221 (365)
T 1h7s_A 148 -PYPRPRGTTVSVQ---QLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQG--KRQPVVCTGGSP 221 (365)
T ss_dssp -ECCCCSEEEEEEE---STTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCCCS
T ss_pred -ccCCCCCcEEEEe---ecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCC--cEEEEEEcCCCc
Confidence 1235689999998 44531 1223567899999999999999999999875321 1234566654
Q ss_pred cHHHHHHHHhcCCCCCCCeeEEEe------------------ccCceEEEEEEEecC----CCCCceeeeeccceecCCC
Q 005028 302 GLEEYVQWLNTDKKPLHDVVGFRK------------------DVDGITIDLALQWCS----DAYSDTMLGYANSIRTIDG 359 (718)
Q Consensus 302 Gl~dyv~~l~~~~~~l~~~i~~~~------------------~~~~~~veval~~s~----~~~~~~~~SFVN~I~T~~G 359 (718)
++.+.+..+....- ...-+.+.. +..++.+.--+.-.. .+-...|+-|||+-+-..
T Consensus 222 ~~~~~i~~i~G~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~- 299 (365)
T 1h7s_A 222 SIKENIGSVFGQKQ-LQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDP- 299 (365)
T ss_dssp SHHHHHHHHHCHHH-HHTEEECCCCCCCHHHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECC-
T ss_pred hHHHHHHHhcChHh-HhceEEEeccCCcccccccccccccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecC-
Confidence 78888876644210 000111110 113455553332221 112345799999977543
Q ss_pred cchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHhhccEEEEEEeecCCCCC
Q 005028 360 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 414 (718)
Q Consensus 360 GTHv~g~~~alt~~in~~~kk~~~~k~k~~~l~~~dIregL~~vVsvki~nP~Fe 414 (718)
..|.++|++..+... .. ..=.+++++.++.-.+|
T Consensus 300 --------~~l~~ai~~~y~~~~--~~-----------~~P~~~L~l~~~p~~vD 333 (365)
T 1h7s_A 300 --------AKVCRLVNEVYHMYN--RH-----------QYPFVVLNISVDSECVD 333 (365)
T ss_dssp --------HHHHHHHHHHHHTTC--TT-----------CBCCEEEEEECCGGGEE
T ss_pred --------HHHHHHHHHHHHhhC--cc-----------CCcEEEEEEEeChHHcc
Confidence 345666665444321 10 34478888888744444
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.80 E-value=2.3e-18 Score=193.31 Aligned_cols=315 Identities=17% Similarity=0.262 Sum_probs=200.8
Q ss_pred ccceeccchhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHHHhcC-CCCeEEEEEeCCC------cEEEEECCCCcccc
Q 005028 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAG-YASNIEVALLADN------SVSVADNGRGIPID 152 (718)
Q Consensus 80 ~~i~~L~~lE~VrkRPgMYIGs~~~~gL~~lv~EIldNAvDe~~ag-~~~~I~V~l~~dg------~isV~DnGrGIPv~ 152 (718)
++++.++..|.++++|+||+.+.+...|++++.|+|+||+|+...| ....|.|.+..++ .|+|.|||+|||.+
T Consensus 6 ~~~k~is~~eff~~~~~~~~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e 85 (471)
T 1mu5_A 6 EKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 85 (471)
T ss_dssp -----CCHHHHHHHCGGGTTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred HHHhhcCHHHhhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHH
Confidence 4677888899999999999999888999999999999999998765 2338999988644 59999999999988
Q ss_pred ccCCCCccceeeeeeeeccCCCCCCCCCceeeccCccCCchhHHhhcccc-----eEEEEEeCCE--EEEEEEe------
Q 005028 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSES-----LEVTVWRDGM--EYHQKYS------ 219 (718)
Q Consensus 153 ~~~~~g~~~~E~v~t~lhag~kF~~~~~~ykvSGGlhGvG~svvNalS~~-----~~V~v~r~gk--~y~q~f~------ 219 (718)
..+ .+|..+++++|+.. +... |.+|+|+++++.+++. ++|++..++. .+..++.
T Consensus 86 ~l~--------~iF~~f~~tsk~~~----~~~~-gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~ 152 (471)
T 1mu5_A 86 EVP--------NAFGRVLYSSKYVN----RQTR-GMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKN 152 (471)
T ss_dssp GHH--------HHHHCCCCC-CCCC----SCCS-CSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTC
T ss_pred HHH--------HHhccccccccccc----ccCC-CCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecccccc
Confidence 654 37888888888732 2333 4599999999999997 8888887653 4444432
Q ss_pred cCcccccceeeccCCCCCCCCceEEEEEeCccccccccccCH-HHHHHHHHHHhhcCCCcEEEEeecCCC--------CC
Q 005028 220 RGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKEDSD--------PE 290 (718)
Q Consensus 220 ~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~-~~i~~Rl~elA~LnpglkI~l~der~~--------~~ 290 (718)
.|..... ... + .....+||+|+++ |..+. .+. +.|.++++++|++||+++|.|.+.... ..
T Consensus 153 ~g~~~~~-~~~--~-~~~~~~GT~V~v~-----l~~~~-~e~~~~I~~~l~~~al~~p~v~i~l~~~~~~~~~~~r~~~~ 222 (471)
T 1mu5_A 153 EPIIVER-GSV--E-NTRGFHGTSVAIS-----IPGDW-PKAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNK 222 (471)
T ss_dssp CEEEEEE-EEE--E-CCTTCCEEEEEEE-----EECCH-HHHHHHHHHHHHHHHHHCTTCEEEEECTTCCEEEECCCCCC
T ss_pred CCccccc-ccc--c-CCCCCCCEEEEEE-----EcCCc-chHHHHHHHHHHHHHhHCCCeEEEEEECCceEEEecccccc
Confidence 1222111 111 0 1245789999999 43322 333 689999999999999999999875211 00
Q ss_pred --CCcceeEEeccc------------------HHHHHHH---------------------------------------Hh
Q 005028 291 --KNQYNEYFFAGG------------------LEEYVQW---------------------------------------LN 311 (718)
Q Consensus 291 --~~~~e~f~~~~G------------------l~dyv~~---------------------------------------l~ 311 (718)
....+.++++.| +..|+.. +.
T Consensus 223 lp~~~~~~~p~~~G~~l~~~~~~~~~~~~~~~~~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (471)
T 1mu5_A 223 IPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFK 302 (471)
T ss_dssp CCCCCCCCCCCGGGCCHHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHH
T ss_pred cCCccceeecCCCchhHHHHHHHHHhcCCCcchHHhhhccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHH
Confidence 011234455454 2333311 11
Q ss_pred cCC----------CCCCC-ee----------EEEe-------ccCc--eEEEEEEEecCCCC---CceeeeeccceecC-
Q 005028 312 TDK----------KPLHD-VV----------GFRK-------DVDG--ITIDLALQWCSDAY---SDTMLGYANSIRTI- 357 (718)
Q Consensus 312 ~~~----------~~l~~-~i----------~~~~-------~~~~--~~veval~~s~~~~---~~~~~SFVN~I~T~- 357 (718)
.-+ .|+.+ .+ .|.. ...| .-||+|+.|.-+.- .-.++-|+|-|+..
T Consensus 303 ~~~~~~~p~~~~lspig~~~~~~g~~~~~~~~f~~~~~r~~~~~~g~pf~ve~~~a~gg~~~~~~~~~~~r~anr~pl~~ 382 (471)
T 1mu5_A 303 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIY 382 (471)
T ss_dssp HCCCCCCCCSTTCCCCCHHHHHHHHHHHHCCSEEEEEECCCEEETTEEEEEEEEEEESTTSCCBSSCEEEEEETTEEECS
T ss_pred hccCccCCCccccCcCCHHHHHhhhhhccCceEEEEEecCCceecCCCEEEEEEeeccCCCCCCCCceEEEEeccCceee
Confidence 111 01100 00 0110 1122 55899999962211 24799999999986
Q ss_pred CCcchHHHHHHHHHHHHHHHH-hhccCCCCCCCCCCHHHHhhccEEEEEEeecCCCCCCccccccCC-chhhhhhhhh
Q 005028 358 DGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN-PEVRKVVDQS 433 (718)
Q Consensus 358 ~GGTHv~g~~~alt~~in~~~-kk~~~~k~k~~~l~~~dIregL~~vVsvki~nP~FegQTKekL~n-~ev~~~v~~~ 433 (718)
+.|. .++++++...- +..++... ...+.++|++--++-.|.|-.|+.+++ +|+...+...
T Consensus 383 ~~~~------~~~~~~~~~~~w~~y~~~~~----------~~~~~~~v~i~st~vp~~~~~k~~i~~~~ei~~ei~~a 444 (471)
T 1mu5_A 383 DEKS------DVIWKVVEELDWKRYGIESD----------QYQMVVMVHLCSTKIPYKSAGKESIAEVEDIEKEIKNA 444 (471)
T ss_dssp CGGG------SHHHHHHHHSCGGGGTCCSS----------CBCEEEEEEEEESSCCBSSTTCCCBCCCHHHHHHHHHH
T ss_pred cCCc------chhhhhhccCChhhcCcCCC----------CCCEEEEEEeccCCCCcCCCCccccCCcHHHHHHHHHH
Confidence 4442 45566664431 22333110 136789999999999999999999886 5555444433
No 27
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=98.68 E-value=7.7e-08 Score=98.07 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=100.3
Q ss_pred hhHHHHHHHHhhHHHHhc-------C-----C--CCeEEEEEeC-CCcEEEEECCCCccccccCCCCccceeeeeeeecc
Q 005028 107 LHHLVYEILDNAVDEAQA-------G-----Y--ASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (718)
Q Consensus 107 L~~lv~EIldNAvDe~~a-------g-----~--~~~I~V~l~~-dg~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lha 171 (718)
-...++|+|.||+|+... + . .-.|.|..+. ...|+|.|||.||+.+.... .|+...+
T Consensus 33 ~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~~--------~l~~ia~ 104 (228)
T 3t0h_A 33 KEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN--------NLGTIAK 104 (228)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT--------GGGSCHH
T ss_pred cHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHHH--------HHHhhcc
Confidence 367899999999998742 1 1 2245555564 45799999999999775432 2333333
Q ss_pred CCC--CCCC--CCceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCceEEEE
Q 005028 172 GGK--FGGS--SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246 (718)
Q Consensus 172 g~k--F~~~--~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F 246 (718)
+++ |.++ ...-..+-|+.|+|+..+-++|+.++|.++..+ ..|..++..|... .+.+. + .....+||+|+.
T Consensus 105 S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~-~v~~~--~-~~~~~~GT~I~v 180 (228)
T 3t0h_A 105 SGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVIL 180 (228)
T ss_dssp HHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEE-EEEEC--C-SSCCSSEEEEEE
T ss_pred ccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceE-EEeec--C-CCCCCCCcEEEE
Confidence 322 2110 001135679999999999999999999998754 5576666655432 12111 1 224578999998
Q ss_pred EeCccccccccc-cCHHHHHHHHHHHh--hcCCCcEEEEeecC
Q 005028 247 WPDKQVFTTAIQ-FDHNTIAGRIRELA--FLNPKLTIALRKED 286 (718)
Q Consensus 247 ~PD~~iF~~~~~-~d~~~i~~Rl~elA--~LnpglkI~l~der 286 (718)
..-.+- .. .+...|..-++.+| .-+| |++..++
T Consensus 181 ~Lk~~~----~E~~e~~~i~~iv~~~a~~l~~P---i~~~~~~ 216 (228)
T 3t0h_A 181 HLKEDQ----TEYLEERRIKEIVKKHSQFIGYP---ITLFVEK 216 (228)
T ss_dssp EECGGG----GGGGSHHHHHHHHHHHSTTCSSC---EEECCC-
T ss_pred EECCch----hhhhhHHHHHHHHHHHHhhCCCC---eEEeecc
Confidence 832221 11 34567888888888 3455 6665443
No 28
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=98.64 E-value=1.7e-07 Score=94.98 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=99.8
Q ss_pred hHHHHHHHHhhHHHHhc------------CCCC--eEEEEEeC-CCcEEEEECCCCccccccCCCCccceeeeeeeeccC
Q 005028 108 HHLVYEILDNAVDEAQA------------GYAS--NIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (718)
Q Consensus 108 ~~lv~EIldNAvDe~~a------------g~~~--~I~V~l~~-dg~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag 172 (718)
...++|+|.||+|+... +..+ .|.|.++. ...|+|.|||.||+.+..+. .|+.+.++
T Consensus 28 ~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl~~--------~l~~ia~S 99 (220)
T 2wer_A 28 EIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELIN--------NLGTIAKS 99 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHH--------HTTTSCCT
T ss_pred hHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHHHH--------HHHhHhcc
Confidence 57999999999998752 1123 46666654 35799999999999765321 23333223
Q ss_pred CC--C----CCCCCceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCceEEE
Q 005028 173 GK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 245 (718)
Q Consensus 173 ~k--F----~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~ 245 (718)
++ | ... .-...-|..|+|...+-++++.++|.++..+ ..|..++..|... .+... +......+||+|+
T Consensus 100 ~~~~f~~k~~~~--~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~~~GT~I~ 174 (220)
T 2wer_A 100 GTKAFMEALSAG--ADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSF-TVTLD--EVNERIGRGTILR 174 (220)
T ss_dssp THHHHHHHHTTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEE-EEEEC--SSSCCCSSEEEEE
T ss_pred cchhHHHHhhcc--CCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCce-Eeecc--cCCCCCCCCeEEE
Confidence 21 1 111 1134568999999999999999999998654 3455555544321 11111 1012456899999
Q ss_pred EEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCC
Q 005028 246 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 287 (718)
Q Consensus 246 F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~ 287 (718)
.....+.- . -++...|.+.++.+|-.. ...|+++.++.
T Consensus 175 l~Lk~~~~--~-~~e~~~i~~~v~~~a~~l-~~PI~~~~~~~ 212 (220)
T 2wer_A 175 LFLKDDQL--E-YLEEKRIKEVIKRHSEFV-AYPIQLVVTKE 212 (220)
T ss_dssp EEECTTCG--G-GGCHHHHHHHHHHHCTTC-CSCEEECCCCC
T ss_pred EEECcchH--H-hCCHHHHHHHHHHHHhcC-CCceEEEeccc
Confidence 87322210 0 146678888888888433 34678877653
No 29
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=98.62 E-value=5.4e-08 Score=99.67 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=93.8
Q ss_pred hhHHHHHHHHhhHHHHhc--------------CCCCeEEEEEeCC-CcEEEEECCCCccccccCCCCccceeeeeeeecc
Q 005028 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (718)
Q Consensus 107 L~~lv~EIldNAvDe~~a--------------g~~~~I~V~l~~d-g~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lha 171 (718)
....+.|+|.||+|+... .....|.|.++.+ ..|+|.|||.||+.+..+. .|+...+
T Consensus 48 ~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~GMs~edl~~--------~~~~ia~ 119 (235)
T 2ior_A 48 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID--------HLGTIAK 119 (235)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHHHHH--------HHTTCCC
T ss_pred HHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECCCCCCHHHHHH--------HHHHHcc
Confidence 357899999999998731 1224577777753 4699999999999765321 3444333
Q ss_pred CCC--CCC----CCCceeeccCccCCchhHHhhcccceEEEEEeCCE----EEEEEEecCcccccceeeccCCCCCCCCc
Q 005028 172 GGK--FGG----SSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGM----EYHQKYSRGKPVTTLTCHVLPVDSKDRQG 241 (718)
Q Consensus 172 g~k--F~~----~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~gk----~y~q~f~~G~~~~~l~~~~~~~~~~~~~G 241 (718)
+++ |.+ +...-...-|..|+|...+-++++.++|.++..+. .|...+..+... .+... ....+|
T Consensus 120 S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~-~i~~~-----~~~~~G 193 (235)
T 2ior_A 120 SGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRG 193 (235)
T ss_dssp TTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEE-EEEEE-----CCCSCE
T ss_pred ccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcE-EEeeC-----CCCCCC
Confidence 332 210 00001234589999998888899999999987653 566665543221 11111 234689
Q ss_pred eEEEEEeCccccccccccCHHHHHHHHHHHh
Q 005028 242 TRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 272 (718)
Q Consensus 242 T~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA 272 (718)
|+|+.......- . -++...|.+.++.+|
T Consensus 194 T~V~v~Lk~~~~--~-~~e~~~i~~lv~~ya 221 (235)
T 2ior_A 194 TEITLHLREGED--E-FLDDWRVRSIISKYS 221 (235)
T ss_dssp EEEEEEECTTCG--G-GGCHHHHHHHHHHHT
T ss_pred EEEEEEEcCchh--h-hCCHHHHHHHHHHHh
Confidence 999976322210 0 146778889999988
No 30
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=98.57 E-value=1.3e-07 Score=97.64 Aligned_cols=161 Identities=18% Similarity=0.248 Sum_probs=99.9
Q ss_pred hHHHHHHHHhhHHHHhc--------------CCCCeEEEEEeC-CCcEEEEECCCCccccccCCCCccceeeeeeeeccC
Q 005028 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (718)
Q Consensus 108 ~~lv~EIldNAvDe~~a--------------g~~~~I~V~l~~-dg~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag 172 (718)
...++|+|.||.|+... +..-.|.|..+. ...|+|.|||.||+.+.... .|+...++
T Consensus 62 ~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~--------~l~~ia~S 133 (256)
T 3o0i_A 62 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN--------NLGTIAKS 133 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT--------HHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHH--------HHHhhccc
Confidence 67899999999998742 112356666664 45799999999999775432 23332222
Q ss_pred CC--CCCC--CCceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCceEEEEE
Q 005028 173 GK--FGGS--SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW 247 (718)
Q Consensus 173 ~k--F~~~--~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~ 247 (718)
++ |.++ ...-..+-|+.|+|+..+-++|+.++|.++.++ ..|..+...|... .+.+. + .....+||+|+..
T Consensus 134 ~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~-~v~~~--~-~~~~~~GT~I~l~ 209 (256)
T 3o0i_A 134 GTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVILH 209 (256)
T ss_dssp HHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEE-EEEEC--C-SSCCSSEEEEEEE
T ss_pred cccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceE-EEeeC--C-CCCCCCCcEEEEE
Confidence 22 2110 001145679999999999999999999998644 5566666555432 11111 1 2345789999988
Q ss_pred eCccccccccccCHHHHHHHHHHHh--hcCCCcEEEEeecC
Q 005028 248 PDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTIALRKED 286 (718)
Q Consensus 248 PD~~iF~~~~~~d~~~i~~Rl~elA--~LnpglkI~l~der 286 (718)
.-.. ...-.+...|..-++.+| .-+| |++..++
T Consensus 210 LK~~---~~e~~e~~~I~~iv~k~s~~l~~P---I~~~~~~ 244 (256)
T 3o0i_A 210 LKED---QTEYLEERRIKEIVKKHSQFIGYP---ITLFVEK 244 (256)
T ss_dssp ECGG---GGGGGCHHHHHHHHHHHCTTCSSC---EEECCC-
T ss_pred EcCc---chhhccHHHHHHHHHHHHhhCCCC---eEEeeee
Confidence 3221 111135678888888888 3445 5655443
No 31
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=98.53 E-value=2.5e-07 Score=96.28 Aligned_cols=163 Identities=17% Similarity=0.232 Sum_probs=100.4
Q ss_pred hhHHHHHHHHhhHHHHhc------------CCCCeEEEEE--eC-CCcEEEEECCCCccccccCCCCccceeeeeeeecc
Q 005028 107 LHHLVYEILDNAVDEAQA------------GYASNIEVAL--LA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (718)
Q Consensus 107 L~~lv~EIldNAvDe~~a------------g~~~~I~V~l--~~-dg~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lha 171 (718)
....++|+|.||+|+... +..+.|.|.| +. ...|+|.|||.||+.+.... .|+.+-+
T Consensus 69 ~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~--------~l~~ia~ 140 (264)
T 1yc1_A 69 KEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN--------NLGTIAK 140 (264)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHSCTT
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHHHH--------HHHhhcc
Confidence 357899999999998751 1125555555 43 35799999999999765321 2333333
Q ss_pred CCC--C----CCCCCceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCceEE
Q 005028 172 GGK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 244 (718)
Q Consensus 172 g~k--F----~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V 244 (718)
+++ | ... .-...-|..|+|...+-++++.++|.++..+ ..|..+...+... .+.+. + .....+||+|
T Consensus 141 S~~~~f~~~l~~~--~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~-~i~~~--~-~~~~~~GT~I 214 (264)
T 1yc1_A 141 SGTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKV 214 (264)
T ss_dssp SCHHHHHHHHHTT--CCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEE-EEEEC--C-SSCCSSEEEE
T ss_pred ccchhhhhhhccc--cchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceE-EEeec--C-CCCCCCCeEE
Confidence 332 1 000 1134568999999999999999999998754 3455554433221 11111 1 2245689999
Q ss_pred EEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCC
Q 005028 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 287 (718)
Q Consensus 245 ~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~ 287 (718)
+.....+. ..-++...|.+.++.+|-.. ...|++++++.
T Consensus 215 ~l~Lk~~~---~e~~e~~~i~~lv~k~s~fi-~~PI~~~~~~~ 253 (264)
T 1yc1_A 215 ILHLKEDQ---TEYLEERRIKEIVKKHSQFI-GYPITLFVEKE 253 (264)
T ss_dssp EEEECGGG---GGGGSHHHHHHHHHHHTTTC-SSCEEECCCC-
T ss_pred EEEECCch---hhhhhHHHHHHHHHHHHhhC-CCCEEEeeccc
Confidence 98732221 01146778888888888443 36688887653
No 32
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=98.53 E-value=3.3e-07 Score=93.93 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=98.8
Q ss_pred hhHHHHHHHHhhHHHHhc--------------CCCCeEEEEEeCC-CcEEEEECCCCccccccCCCCccceeeeeeeecc
Q 005028 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (718)
Q Consensus 107 L~~lv~EIldNAvDe~~a--------------g~~~~I~V~l~~d-g~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lha 171 (718)
....++|+|.||+|+... +....|.|.++.+ ..|+|.|||.||+.+.... .|+.+-.
T Consensus 33 ~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMt~edl~~--------~l~~ia~ 104 (236)
T 2gqp_A 33 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK--------NLGTIAK 104 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHCC--
T ss_pred chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCcCCCHHHHHH--------HHhhhcc
Confidence 467899999999998641 1224677777754 4799999999999765321 2333323
Q ss_pred CCC--C----CCCC---CceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCc
Q 005028 172 GGK--F----GGSS---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQG 241 (718)
Q Consensus 172 g~k--F----~~~~---~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~G 241 (718)
+|+ | .... ..-...-|..|+|...+-.+++.++|.++..+ ..|..+.. | ..-.+... +......+|
T Consensus 105 Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~-g-g~~~i~~~--~~~~~~~~G 180 (236)
T 2gqp_A 105 SGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESD-S-NEFSVIAD--PRGNTLGRG 180 (236)
T ss_dssp -------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEES-S-SCEEEEEC--TTCSCSSSE
T ss_pred cccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEe-C-CEEEEEec--cCCCCCCCC
Confidence 322 2 1000 01123458899999999999999999998754 33444433 3 21122111 111235689
Q ss_pred eEEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCC
Q 005028 242 TRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 287 (718)
Q Consensus 242 T~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~ 287 (718)
|+|+.....+. ..-++...|.+.++.+|-..+ ..|++++++.
T Consensus 181 T~I~l~Lk~~~---~~~le~~~i~~lv~~~s~~i~-~pI~~~~~~~ 222 (236)
T 2gqp_A 181 TTITLVLKEEA---SDYLELDTIKNLVKKYSQFIN-FPIYVWSSKT 222 (236)
T ss_dssp EEEEEEECGGG---GGGGCHHHHHHHHHHHHTTCS-SCEEEEEECC
T ss_pred eEEEEEECCcc---hhhChHHHHHHHHHHHhhhCC-CceEEeeeec
Confidence 99998743321 111367788888888884433 6688877653
No 33
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=98.37 E-value=1.7e-06 Score=90.40 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=99.7
Q ss_pred hHHHHHHHHhhHHHHhc--------------CCCCeEEEEEeC-CCcEEEEECCCCccccccCCCCccceeeeeeeeccC
Q 005028 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (718)
Q Consensus 108 ~~lv~EIldNAvDe~~a--------------g~~~~I~V~l~~-dg~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag 172 (718)
...++|+|.||.|+... +..-.|.|.++. ...++|.|||.||+-+.... .|+.+-.+
T Consensus 48 ~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~edL~~--------~LgtIa~S 119 (281)
T 3peh_A 48 EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLIN--------NLGTIAKS 119 (281)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------HHHHHHhH
Confidence 56789999999998741 123467777775 46799999999999765321 23333333
Q ss_pred CC--C-------CCCCCceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCce
Q 005028 173 GK--F-------GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 242 (718)
Q Consensus 173 ~k--F-------~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT 242 (718)
|+ | +.+ ...-|+.|||...+=++++.++|.++..+ ..|..+...|... .+.. .+.+....+||
T Consensus 120 gtk~f~e~l~~~~~d----~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~f-ti~~--~~~~~~~~~GT 192 (281)
T 3peh_A 120 GTSNFLEAISKSGGD----MSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKF-TIYK--DPRGATLKRGT 192 (281)
T ss_dssp CHHHHHHHHHHTTCC----STTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCE-EEEE--CTTCSTTSSEE
T ss_pred hhhhHHHhhhccccc----cccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccE-EEEE--cCCCCCCCCCe
Confidence 32 1 111 23469999999999999999999998754 4455554443221 1211 11123457899
Q ss_pred EEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecC
Q 005028 243 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (718)
Q Consensus 243 ~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der 286 (718)
+|+.....+-- . -++...|+.-++..+-.- +..|+|..++
T Consensus 193 ~I~L~Lked~~--e-~le~~~ik~ivkkys~fi-~~pI~l~~~k 232 (281)
T 3peh_A 193 RISLHLKEDAT--N-LLNDKKLMDLISKYSQFI-QFPIYLLHEN 232 (281)
T ss_dssp EEEEEECGGGG--G-GGSHHHHHHHHHHHTTTC-CSCEEEEEEE
T ss_pred EEEEEECCchh--h-hcCHHHHHHHHHHhhccC-CcceEEeeee
Confidence 99988544321 1 145667777777766322 2556666554
No 34
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=98.33 E-value=3.6e-06 Score=97.16 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhhHHHHhc--------------CCCCeEEEEEeCC-CcEEEEECCCCccccccCCCCccceeeeeeeecc
Q 005028 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (718)
Q Consensus 107 L~~lv~EIldNAvDe~~a--------------g~~~~I~V~l~~d-g~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lha 171 (718)
....++|+|.||+|+... .....|.|.++.+ +.|+|.|||.||+-+.... .|+..-+
T Consensus 28 ~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~--------~l~tiA~ 99 (624)
T 2ioq_A 28 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID--------HLGTIAK 99 (624)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHHHCC
T ss_pred hHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCCCCCHHHHHH--------HHHhhcc
Confidence 357899999999999721 1224688888854 5799999999999765321 2333323
Q ss_pred CCC--C----CCCCCceeeccCccCCchhHHhhcccceEEEEEeCC----EEEEEEEecCcccccceeeccCCCCCCCCc
Q 005028 172 GGK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQG 241 (718)
Q Consensus 172 g~k--F----~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g----k~y~q~f~~G~~~~~l~~~~~~~~~~~~~G 241 (718)
+++ | .+....-...-|+.|+|...+-++|+.++|.++..+ ..|..+...|.. -.+.+. ....+|
T Consensus 100 Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~-~~i~~~-----~~~~~G 173 (624)
T 2ioq_A 100 SGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE-YTVADI-----TKEDRG 173 (624)
T ss_dssp ---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC-CEEEEE-----CCSSSE
T ss_pred cccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe-EEEEEC-----CCCCCC
Confidence 332 2 100001123569999999999999999999998765 245555443322 122111 134689
Q ss_pred eEEEEEeCccccccccccCHHHHHHHHHHHh--hcCCCcEE
Q 005028 242 TRIRFWPDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTI 280 (718)
Q Consensus 242 T~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA--~LnpglkI 280 (718)
|+|+.....+. ..-++...|.+-++..| .-+| +.+
T Consensus 174 T~I~L~Lk~d~---~Efl~~~~i~~ivkkys~fi~~P-I~~ 210 (624)
T 2ioq_A 174 TEITLHLREGE---DEFLDDWRVRSIISKYSDHIALP-VEI 210 (624)
T ss_dssp EEEEEEECTTC---GGGGCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred eEEEEEEcchh---hhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 99998743221 11135677888888888 4567 555
No 35
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=98.33 E-value=2e-06 Score=98.14 Aligned_cols=155 Identities=20% Similarity=0.237 Sum_probs=97.3
Q ss_pred hHHHHHHHHhhHHHHhc--------------CCCCeEEEEEeCC-CcEEEEECCCCccccccCCCCccceeeeeeeeccC
Q 005028 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (718)
Q Consensus 108 ~~lv~EIldNAvDe~~a--------------g~~~~I~V~l~~d-g~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag 172 (718)
...++|+|.||+|+... .....|.|.++.+ +.|+|.|||.||+-+.... .|+..-++
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~--------~l~tiA~S 100 (559)
T 1y4s_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID--------HLGTIAKS 100 (559)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHHHHHH--------HHSCCSCC
T ss_pred HHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCCCCCHHHHHH--------HHhhhccc
Confidence 57899999999999721 1235788888864 5799999999999765321 23433333
Q ss_pred CC--CCC----CCCceeeccCccCCchhHHhhcccceEEEEEeCC----EEEEEEEecCcccccceeeccCCCCCCCCce
Q 005028 173 GK--FGG----SSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 242 (718)
Q Consensus 173 ~k--F~~----~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g----k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT 242 (718)
++ |-. ....-...-|+.|+|...+-++++.++|.++..+ ..|..+...|.. -.+.+. ....+||
T Consensus 101 g~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~-~~i~~~-----~~~~~GT 174 (559)
T 1y4s_A 101 GTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE-YTVADI-----TKEDRGT 174 (559)
T ss_dssp CCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSE-EEEEEE-----CCCSCEE
T ss_pred ccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCe-eEEeEC-----CCCCCCe
Confidence 32 210 0001134569999999889999999999998755 245555443322 122111 1346899
Q ss_pred EEEEEeCccccccccccCHHHHHHHHHHHh--hcCCCcEE
Q 005028 243 RIRFWPDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTI 280 (718)
Q Consensus 243 ~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA--~LnpglkI 280 (718)
+|+.....+. ..-++...|.+-++..| .-+| +.+
T Consensus 175 ~I~L~Lk~d~---~Efle~~~I~~iv~kys~fi~~P-I~~ 210 (559)
T 1y4s_A 175 EITLHLREGE---DEFLDDWRVRSIISKYSDHIALP-VEI 210 (559)
T ss_dssp EEEEEECTTC---GGGSCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred EEEEEEcchh---hhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 9998743321 11135677888888888 4567 555
No 36
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=98.25 E-value=2.4e-06 Score=87.38 Aligned_cols=163 Identities=17% Similarity=0.223 Sum_probs=99.2
Q ss_pred hhHHHHHHHHhhHHHHhc--------------CCCCeEEEEEeC-CCcEEEEECCCCccccccCCCCccceeeeeeeecc
Q 005028 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (718)
Q Consensus 107 L~~lv~EIldNAvDe~~a--------------g~~~~I~V~l~~-dg~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lha 171 (718)
-...++|+|.||.|+... +..-.|.|..+. ...++|.|||.||..+.... .|+.+-.
T Consensus 40 ~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~~--------~LgtIA~ 111 (239)
T 3nmq_A 40 KEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLIN--------NLGTIAK 111 (239)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT--------HHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHHH--------HHHHHhc
Confidence 367899999999998642 112357777775 45799999999999765322 1333222
Q ss_pred CC-C-C----CCCCCceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCceEE
Q 005028 172 GG-K-F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 244 (718)
Q Consensus 172 g~-k-F----~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V 244 (718)
+| + | ..+ .-...-|+.|||...+=.+++.++|.+++++ ..|..+...+ ..-.+... + +....+||+|
T Consensus 112 Sgtk~f~e~~~~~--~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~-g~fti~~~--~-~~~~~~GT~I 185 (239)
T 3nmq_A 112 SGTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAG-GSFTVRAD--H-GEPIGRGTKV 185 (239)
T ss_dssp HHHHHHHHHHHTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECST-TEEEEEEC--C-SSCCSSEEEE
T ss_pred ccchhhhhhhccc--CCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCC-CcEEEEec--C-CCcCCCCCEE
Confidence 22 1 1 000 0134569999999999999999999998744 4454443322 21112111 1 2345789999
Q ss_pred EEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecCC
Q 005028 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 287 (718)
Q Consensus 245 ~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der~ 287 (718)
+.....+-- . -++...|++-++..+-.- +.-|++..++.
T Consensus 186 ~L~lk~d~~--e-~l~~~~i~~lv~kys~fi-~~pI~~~~~~~ 224 (239)
T 3nmq_A 186 ILHLKEDQT--E-YLEERRVKEVVKKHSQFI-GYPITLYLEKE 224 (239)
T ss_dssp EEEECGGGG--G-GGSHHHHHHHHHHHCTTC-SSCEEECCCSC
T ss_pred EEEECCChH--H-hcCHHHHHHHHHHHHhcc-CCceEEeeeee
Confidence 987544321 1 145566777777666322 35677776653
No 37
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.24 E-value=1.6e-06 Score=90.35 Aligned_cols=163 Identities=16% Similarity=0.200 Sum_probs=94.5
Q ss_pred hHHHHHHHHhhHHHHhc--------------CCCCeEEEEEeC-CCcEEEEECCCCccccccCCCCccceeeeeeee-cc
Q 005028 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVL-HA 171 (718)
Q Consensus 108 ~~lv~EIldNAvDe~~a--------------g~~~~I~V~l~~-dg~isV~DnGrGIPv~~~~~~g~~~~E~v~t~l-ha 171 (718)
...++|+|.||+|+... +..-.|.|.++. ...++|.|||.||+-+.... .|+.+ .+
T Consensus 30 eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~edl~~--------~l~tia~S 101 (269)
T 1qy5_A 30 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK--------NLGTIAKS 101 (269)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHSCCSH
T ss_pred hHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHHHHH--------Hhhhhccc
Confidence 45899999999998641 122357777764 45799999999999765321 23333 22
Q ss_pred CCC-CCC----C---CCceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCce
Q 005028 172 GGK-FGG----S---SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 242 (718)
Q Consensus 172 g~k-F~~----~---~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT 242 (718)
|.+ |-. . ...-...-|+.|+|...+-.++..++|.++..+ ..|..+...|.. .+... +......+||
T Consensus 102 gtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~--~i~~~--~~~~~~~~GT 177 (269)
T 1qy5_A 102 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIAD--PRGNTLGRGT 177 (269)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCE--EEEEC--TTCSCSSSEE
T ss_pred ccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEE--EEEec--cCCCcCCCCe
Confidence 222 200 0 000022348999999999999999999998754 334433322221 11111 1122346899
Q ss_pred EEEEEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEEeecC
Q 005028 243 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (718)
Q Consensus 243 ~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l~der 286 (718)
+|+.....+. ..-++...|++-++..+-.- +..|+|..++
T Consensus 178 ~I~L~Lk~d~---~e~le~~~i~~lvkkys~fi-~~PI~l~~~k 217 (269)
T 1qy5_A 178 TITLVLKEEA---SDYLELDTIKNLVKKYSQFI-NFPIYVWSSK 217 (269)
T ss_dssp EEEEEECGGG---GGGGSHHHHHHHHHTTCTTC-SSCEEEEEEC
T ss_pred EEEEEEcccc---hhhhhHHHHHHHHHhhhccc-ceeeEEeeee
Confidence 9997743221 01135566666666665322 2557777654
No 38
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=98.04 E-value=1.5e-05 Score=92.32 Aligned_cols=159 Identities=17% Similarity=0.215 Sum_probs=86.3
Q ss_pred hHHHHHHHHhhHHHHhc------------CCC--CeEEEEEeCC-CcEEEEECCCCccccccCCCCccceeeeeeee-cc
Q 005028 108 HHLVYEILDNAVDEAQA------------GYA--SNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVL-HA 171 (718)
Q Consensus 108 ~~lv~EIldNAvDe~~a------------g~~--~~I~V~l~~d-g~isV~DnGrGIPv~~~~~~g~~~~E~v~t~l-ha 171 (718)
...++|+|.||+|+... +.+ ..|.|.++.+ ..|+|.|||.||+-+.... .|+++ .+
T Consensus 47 eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~--------~l~tIA~S 118 (666)
T 2o1u_A 47 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK--------NLGTIAKS 118 (666)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HTTC----
T ss_pred hHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCCCCCHHHHHH--------HHhhhccc
Confidence 46899999999998721 113 4688888754 4699999999999765321 12222 22
Q ss_pred CCC-C----CCCC---CceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCce
Q 005028 172 GGK-F----GGSS---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 242 (718)
Q Consensus 172 g~k-F----~~~~---~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT 242 (718)
|.+ | .... ..-...-|+.|+|...+=++++.++|+++..+ ..|..+...|.. .+... +......+||
T Consensus 119 Gtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~--ti~~~--~~~~~~~~GT 194 (666)
T 2o1u_A 119 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIAD--PRGNTLGRGT 194 (666)
T ss_dssp ---------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCC--EEEEC--TTCCSSSSEE
T ss_pred ccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeE--EEEec--ccCCCCCCCe
Confidence 222 2 1100 00123458999999998889999999998754 334433322222 22111 1112357899
Q ss_pred EEEEEeCccccccccccCHHHHHHHHHHHh--hcCCCcEEEEee
Q 005028 243 RIRFWPDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTIALRK 284 (718)
Q Consensus 243 ~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA--~LnpglkI~l~d 284 (718)
+|+.....+. ..-++...|.+-++..| .-+| |.|..
T Consensus 195 ~I~L~Lk~d~---~Efle~~~I~~ivkkys~fi~~P---I~~~~ 232 (666)
T 2o1u_A 195 TITLVLKEEA---SDYLELDTIKNLVKKYSQFINFP---IYVWS 232 (666)
T ss_dssp EEEEEECTTT---TTSSSTTHHHHHHHHHSTTCCSC---EEEEE
T ss_pred EEEEEEccch---hhhccHHHHHHHHHHHHhhCCCc---eEEec
Confidence 9998743221 00134567777787777 4456 55543
No 39
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=98.02 E-value=3.6e-05 Score=89.28 Aligned_cols=158 Identities=18% Similarity=0.233 Sum_probs=94.9
Q ss_pred hHHHHHHHHhhHHHHhc--------------CCCCeEEEEEeCC-CcEEEEECCCCccccccCCCCccceeeeeeeeccC
Q 005028 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (718)
Q Consensus 108 ~~lv~EIldNAvDe~~a--------------g~~~~I~V~l~~d-g~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag 172 (718)
...++|+|.||+|+... +....|.|.++.+ ..|+|.|||.||+-+.... .|+++-.+
T Consensus 28 eifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~--------~l~tIA~S 99 (677)
T 2cg9_A 28 EIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELIN--------NLGTIAKS 99 (677)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHG--------GGSSSSSC
T ss_pred hHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCCCCCHHHHHH--------HHHhHhcc
Confidence 46899999999998731 1234688888754 5799999999999765322 23333222
Q ss_pred CC--C----CCCCCceeeccCccCCchhHHhhcccceEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCceEEE
Q 005028 173 GK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 245 (718)
Q Consensus 173 ~k--F----~~~~~~ykvSGGlhGvG~svvNalS~~~~V~v~r~g-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~ 245 (718)
|+ | ... .-...-|+.|||...+=+.++.++|.+++.| ..|..+...|.. -.+... +.+....+||+|+
T Consensus 100 gt~~f~~kl~~~--~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~-~ti~~~--~~~~~~~~GT~I~ 174 (677)
T 2cg9_A 100 GTKAFMEALSAG--ADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGS-FTVTLD--EVNERIGRGTILR 174 (677)
T ss_dssp TTHHHHSCCCSS--CCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSE-EEEEEC--CSSCCCSSEEEEE
T ss_pred ccHHHHHhhhcc--cchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCce-EEEeec--CCCCCCCCCeEEE
Confidence 22 2 111 1123569999999888888899999998755 344444433321 112111 1123456899999
Q ss_pred EEeCccccccccccCHHHHHHHHHHHhhcCCCcEEEE
Q 005028 246 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 282 (718)
Q Consensus 246 F~PD~~iF~~~~~~d~~~i~~Rl~elA~LnpglkI~l 282 (718)
.....+- ..-++...|.+-++..|-.- +.-|++
T Consensus 175 L~Lk~d~---~e~l~~~~i~~lvkkys~fi-~~PI~l 207 (677)
T 2cg9_A 175 LFLKDDQ---LEYLEEKRIKEVIKRHSEFV-AYPIQL 207 (677)
T ss_dssp EEECTTG---GGGGCHHHHHHHHHHHSTTC-SSCEEE
T ss_pred EEEcchh---hccccHHHHHHHHHHHHhhC-CCCeEE
Confidence 8733221 01135667777777666322 345666
No 40
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=97.80 E-value=4.9e-05 Score=78.16 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=76.3
Q ss_pred eEEEEEeC-CCcEEEEECCCCccccccCCCCccceeeeeeeeccCC-C-CCC---CCCceeeccCccCCchhHHhhcccc
Q 005028 129 NIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGG-K-FGG---SSSGYSVSGGLHGVGLSVVNALSES 202 (718)
Q Consensus 129 ~I~V~l~~-dg~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~-k-F~~---~~~~ykvSGGlhGvG~svvNalS~~ 202 (718)
.|.|.++. ...++|+|||.||+-+.... .|+++-.+| + |-. ....-...-|+.|||...+=.+++.
T Consensus 120 ~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~--------~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdk 191 (272)
T 3ied_A 120 IIKIKPDKEKKTLTITDNGIGMDKSELIN--------NLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNR 191 (272)
T ss_dssp CEEEEEETTTTEEEEEECSCCCCHHHHHH--------HTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCCCCHHHHHH--------HHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCE
Confidence 58888885 46799999999999765432 233332222 1 200 0000022359999999999899999
Q ss_pred eEEEEEeCCEEEEEEEecCcccccceeecc---CCCCCCCCceEEEEEeCccccccccccCHHHHHHHHHHHh
Q 005028 203 LEVTVWRDGMEYHQKYSRGKPVTTLTCHVL---PVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 272 (718)
Q Consensus 203 ~~V~v~r~gk~y~q~f~~G~~~~~l~~~~~---~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~Rl~elA 272 (718)
++|.++.++..|..+...+ ..-.+...+. ..+....+||+|+.....+-- . -++...|++-++..+
T Consensus 192 V~V~Sk~dd~~~~WeS~g~-gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~--e-~le~~~ik~likkys 260 (272)
T 3ied_A 192 VEVYTKKEDQIYRWSSDLK-GSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECD--E-YLEDYKLKELIKKYS 260 (272)
T ss_dssp EEEEEESSSCEEEEEECSS-SEEEEEECTTCTTCC--CCSSEEEEEEEECGGGG--G-GGSHHHHHHHHHHHC
T ss_pred EEEEEcCCCceEEEEECCC-CCEEEEECcccccccCCCCCCCcEEEEEECCChH--H-hcCHHHHHHHHHHHH
Confidence 9999986666666655432 2111211110 012245789999977544321 1 134456666666554
No 41
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.70 E-value=6.3e-05 Score=69.67 Aligned_cols=94 Identities=20% Similarity=0.313 Sum_probs=58.8
Q ss_pred CchhHHHHHHHHhhHHHHhcCC-CCeEEEEEeC-CC--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCC
Q 005028 105 RGLHHLVYEILDNAVDEAQAGY-ASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (718)
Q Consensus 105 ~gL~~lv~EIldNAvDe~~ag~-~~~I~V~l~~-dg--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~ 180 (718)
.-+..++.|+|+||+.++..+. ...|.|.+.. ++ .|+|+|||.||| ... -+|.....+ +
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~-~~~---------~~~~~~~~~-~------ 100 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-DIE---------EARQPLFTT-K------ 100 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-CHH---------HHTCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC-hHH---------HhhcccccC-C------
Confidence 4577889999999999876532 4678888774 33 499999999999 321 122211111 0
Q ss_pred ceeeccCccCCchhHHhhcccceEEEEEeC-CEEEEEEE
Q 005028 181 GYSVSGGLHGVGLSVVNALSESLEVTVWRD-GMEYHQKY 218 (718)
Q Consensus 181 ~ykvSGGlhGvG~svvNalS~~~~V~v~r~-gk~y~q~f 218 (718)
...+-+|+|+.++..+.+.+.++...+ |..+++.+
T Consensus 101 ---~~~~~~GlGL~iv~~~~~~i~~~~~~~~Gt~v~~~l 136 (145)
T 1th8_A 101 ---PELERSGMGFTIMENFMDEVIVESEVNKGTTVYLKK 136 (145)
T ss_dssp ------CCCSCHHHHHHHHSSEEEEEEETTTEEEEEEEE
T ss_pred ---CCCCCCcchHHHHHHHHheEEEEeCCCCCEEEEEEE
Confidence 012347999999999998555554332 34444444
No 42
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.56 E-value=6.6e-05 Score=73.52 Aligned_cols=79 Identities=30% Similarity=0.332 Sum_probs=42.3
Q ss_pred CchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCCcEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCceee
Q 005028 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSV 184 (718)
Q Consensus 105 ~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~ykv 184 (718)
.-|.+++.++|+||+.... ....|.|.+..++ ++|+|||.|||.+..+. +|.....+.+ .
T Consensus 116 ~~l~~il~nLl~NAi~~~~--~~~~i~i~~~~~~-i~V~D~G~Gi~~~~~~~--------if~~f~~~~~---------~ 175 (222)
T 3jz3_A 116 LLLSLLVRNLLDNAVRYSP--QGSVVDVTLNADN-FIVRDNGPGVTPEALAR--------IGERFYRPPG---------Q 175 (222)
T ss_dssp HHHHHHHHHHHHHHHHTCC--TTCEEEEEECSSE-EEEECSCC-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCC--CCCeEEEEEccCe-EEEEECCCCCCHHHHHH--------HHhhhccCCC---------C
Confidence 3477888899999988753 3456888887665 99999999999875432 4443322111 1
Q ss_pred ccCccCCchhHHhhcccce
Q 005028 185 SGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 185 SGGlhGvG~svvNalS~~~ 203 (718)
..+-.|+|+++|..+.+.+
T Consensus 176 ~~~g~GlGL~i~~~i~~~~ 194 (222)
T 3jz3_A 176 TATGSGLGLSIVQRIAKLH 194 (222)
T ss_dssp ------CTHHHHHHHHHHT
T ss_pred CCCcccccHHHHHHHHHHc
Confidence 1234799999999888654
No 43
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.53 E-value=0.00028 Score=65.12 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=54.3
Q ss_pred CCCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCC---cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCC
Q 005028 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 179 (718)
Q Consensus 103 ~~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg---~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~ 179 (718)
+..-|.+++.++|+||+..... .|.|.+..++ .++|.|||.|||.+..+. +|.....+
T Consensus 41 d~~~l~~il~nLl~NAi~~~~~----~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~--------~f~~~~~~------- 101 (152)
T 1id0_A 41 EQNDFVEVMGNVLDNACKYCLE----FVEISARQTDEHLYIVVEDDGPGIPLSKREV--------IFDRGQRV------- 101 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSS----EEEEEEEECSSCEEEEEEESSSCCCGGGTTG--------GGSCCCCT-------
T ss_pred CHHHHHHHHHHHHHHHHHhCcC----eEEEEEEecCCEEEEEEEeCCCCcCHHHHHH--------Hhccceec-------
Confidence 4456889999999999987532 7888887433 499999999999875432 23221111
Q ss_pred CceeeccCccCCchhHHhhcccce
Q 005028 180 SGYSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 180 ~~ykvSGGlhGvG~svvNalS~~~ 203 (718)
+.+.+-+|+|++++..+.+.+
T Consensus 102 ---~~~~~g~GlGL~i~~~~~~~~ 122 (152)
T 1id0_A 102 ---DTLRPGQGVGLAVAREITEQY 122 (152)
T ss_dssp ---TCCCTTCCSCHHHHHHHHHHT
T ss_pred ---cCCCCCcccCHHHHHHHHHHc
Confidence 111245899999999887755
No 44
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.52 E-value=0.00028 Score=64.88 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=52.2
Q ss_pred CCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCC---cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCC
Q 005028 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (718)
Q Consensus 104 ~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg---~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~ 180 (718)
..-|..++.++|+||+..+. ....|.|.+..++ .++|.|||.|||.+..+. +|. .|.
T Consensus 45 ~~~l~~il~nll~NAi~~~~--~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~--------~f~------~~~---- 104 (152)
T 3a0y_A 45 RTRIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK--------IFS------PFF---- 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTG--------GGS------TTC----
T ss_pred HHHHHHHHHHHHHHHHHhcC--CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHh--------Hhh------hhc----
Confidence 35688899999999998763 2458888887543 489999999999875432 221 111
Q ss_pred ceeeccCccCCchhHHhhccc
Q 005028 181 GYSVSGGLHGVGLSVVNALSE 201 (718)
Q Consensus 181 ~ykvSGGlhGvG~svvNalS~ 201 (718)
+...+-+|+|+++|..+.+
T Consensus 105 --~~~~~g~GlGL~i~~~~~~ 123 (152)
T 3a0y_A 105 --TTKTQGTGLGLSICRKIIE 123 (152)
T ss_dssp --CCC--CCCCSHHHHHHHHH
T ss_pred --cCCCCCCCcCHHHHHHHHH
Confidence 1112348999999987765
No 45
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.50 E-value=0.00012 Score=65.96 Aligned_cols=61 Identities=34% Similarity=0.526 Sum_probs=46.0
Q ss_pred CchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCC--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCce
Q 005028 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 182 (718)
Q Consensus 105 ~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~y 182 (718)
.-|..++.|+|+||+.++ ..+.|.|.+..++ .++|.|||.|||.+.
T Consensus 42 ~~l~~il~nll~NA~k~~---~~~~i~i~~~~~~~~~i~v~D~G~gi~~~~----------------------------- 89 (129)
T 3zxo_A 42 DQAEAVVREAVSNAVRHA---AASTLTVRVKVDDDLCIEVTDNGRGMPDEF----------------------------- 89 (129)
T ss_dssp HHHHHHHHHHHHHCCCCS---SCCEEEEEEEESSEEEEEEEECCCCCTTTT-----------------------------
T ss_pred HHHHHHHHHHHHHHHHhC---CCceEEEEEEEcCCEEEEEecCCCCCCccc-----------------------------
Confidence 346677777777777765 3468988888544 589999999998642
Q ss_pred eeccCccCCchhHHhhcccce
Q 005028 183 SVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 183 kvSGGlhGvG~svvNalS~~~ 203 (718)
.|+|++++..+.+.+
T Consensus 90 ------~GlGL~i~~~~~~~~ 104 (129)
T 3zxo_A 90 ------TGSGLTNLRQRAEQA 104 (129)
T ss_dssp ------CSHHHHHHHHHHHHT
T ss_pred ------CCcCHHHHHHHHHHc
Confidence 488999998877654
No 46
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.48 E-value=0.00018 Score=68.64 Aligned_cols=84 Identities=20% Similarity=0.338 Sum_probs=53.1
Q ss_pred CCchhHHHHHHHHhhHHHHhcCCCCeEEEEE--eCC-C--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCC
Q 005028 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVAL--LAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGS 178 (718)
Q Consensus 104 ~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l--~~d-g--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~ 178 (718)
..-|..++.++|+||++.+..+ ..|.|.+ ..+ + .|+|.|||.|||.+..+. +|.....+..
T Consensus 41 ~~~l~~il~nLl~NAi~~~~~~--~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~--------lf~~~~~~~~---- 106 (177)
T 3sl2_A 41 QDKITQVLDNIISNALKYSPEG--GHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEK--------VFDRFYRVDK---- 106 (177)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTT--CCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTT--------TTSTTCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHH--------HHhhhccCCC----
Confidence 4558899999999999986443 4455555 543 3 489999999999875432 2332222211
Q ss_pred CCceeeccCccCCchhHHhhcccce
Q 005028 179 SSGYSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 179 ~~~ykvSGGlhGvG~svvNalS~~~ 203 (718)
......+-+|+|++++..+.+.+
T Consensus 107 --~~~~~~~g~GlGL~iv~~~~~~~ 129 (177)
T 3sl2_A 107 --ARTRKLGGTGLGLAIAKEMVQAH 129 (177)
T ss_dssp -------CCCCCCHHHHHHHHHHHT
T ss_pred --CCCCCCCCCCcCHHHHHHHHHHc
Confidence 11222345899999999887654
No 47
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.44 E-value=0.00019 Score=67.26 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=60.5
Q ss_pred CCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeC-CC--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCC
Q 005028 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (718)
Q Consensus 104 ~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~-dg--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~ 180 (718)
..-|..++.++|+||+... ...|.|.+.. ++ .++|.|||.|||.+..+. +|.....+..
T Consensus 45 ~~~l~~il~nll~NAik~~----~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~--------~f~~f~~~~~------ 106 (161)
T 1bxd_A 45 PLSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKH--------LFQPFVRGDS------ 106 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGC--------SSCCCCCCSC------
T ss_pred HHHHHHHHHHHHHHHHhhc----CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH--------hCCCceeCCC------
Confidence 4558888899999998875 5678888874 33 499999999999875432 3433222211
Q ss_pred ceeeccCccCCchhHHhhcccce----EEEEEe-CCEEEEEEE
Q 005028 181 GYSVSGGLHGVGLSVVNALSESL----EVTVWR-DGMEYHQKY 218 (718)
Q Consensus 181 ~ykvSGGlhGvG~svvNalS~~~----~V~v~r-~gk~y~q~f 218 (718)
. ...+-+|+|+++|..+.+.+ .++... .|..+++.+
T Consensus 107 ~--~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~l 147 (161)
T 1bxd_A 107 A--RTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWL 147 (161)
T ss_dssp C--CCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEE
T ss_pred C--CCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEE
Confidence 0 11234899999998887765 333332 334455554
No 48
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.40 E-value=0.00042 Score=62.79 Aligned_cols=64 Identities=20% Similarity=0.114 Sum_probs=46.9
Q ss_pred CchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCC-C--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCc
Q 005028 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (718)
Q Consensus 105 ~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~d-g--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~ 181 (718)
.-|..++.|+|+||+.++ ..+.|.|.+..+ + .++|.|||.|||.+..
T Consensus 39 ~~l~~il~nll~Na~k~~---~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~--------------------------- 88 (128)
T 3ehg_A 39 NILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS--------------------------- 88 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCSCSSC---------------------------
T ss_pred HHHHHHHHHHHHHHHhcC---CCcEEEEEEEEeCCEEEEEEEECCcCcCcccC---------------------------
Confidence 346678888888888875 346888888743 3 4899999999997532
Q ss_pred eeeccCccCCchhHHhhcccce
Q 005028 182 YSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 182 ykvSGGlhGvG~svvNalS~~~ 203 (718)
+-.|+|++.+..+.+.+
T Consensus 89 -----~g~GlGL~~~~~~~~~~ 105 (128)
T 3ehg_A 89 -----FSKGHGLLGMRERLEFA 105 (128)
T ss_dssp -----CCTTSHHHHHHHHHHHT
T ss_pred -----CCCCccHHHHHHHHHHc
Confidence 11589999988777643
No 49
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.37 E-value=0.00019 Score=78.24 Aligned_cols=91 Identities=18% Similarity=0.343 Sum_probs=59.9
Q ss_pred CchhHHHHHHHHhhHHHHhcCC-----CCeEEEEEeCCC---cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCC
Q 005028 105 RGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 176 (718)
Q Consensus 105 ~gL~~lv~EIldNAvDe~~ag~-----~~~I~V~l~~dg---~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~ 176 (718)
.-|.+++.++|+||+.....+. ...|.|.+..++ .|+|.|+|.|||.+..+. +|.....+.+-.
T Consensus 229 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~--------if~~f~~~~~~~ 300 (394)
T 2e0a_A 229 SHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDR--------LFSYTYSTAPTP 300 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHH--------HTSTTCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHH--------HhCcCccCCCCC
Confidence 4688999999999999887654 457999988543 499999999999875432 444333322110
Q ss_pred CCCCceeeccCccCCchhHHhhcccce
Q 005028 177 GSSSGYSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 177 ~~~~~ykvSGGlhGvG~svvNalS~~~ 203 (718)
..+.......+-.|+|+++|..+.+.+
T Consensus 301 ~~~~~~~~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2e0a_A 301 VMDNSRNAPLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp ------CCCSSCSSCHHHHHHHHHHHT
T ss_pred CcCcCCCCCCCCcccCHHHHHHHHHHh
Confidence 000001112234899999999988765
No 50
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.35 E-value=0.00022 Score=66.17 Aligned_cols=79 Identities=25% Similarity=0.456 Sum_probs=47.0
Q ss_pred CCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCC-C------------cEEEEECCCCccccccCCCCccceeeeeeeec
Q 005028 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N------------SVSVADNGRGIPIDLHPATNKSALETVLTVLH 170 (718)
Q Consensus 104 ~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~d-g------------~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lh 170 (718)
..-|..++.++|+||+..+..+ ...|.|.+..+ + .++|.|||.|||.+..+. +|....
T Consensus 46 ~~~l~~il~nLl~NAik~~~~~-~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~--------lf~~~~ 116 (160)
T 1r62_A 46 PDQIEQVLLNIVRNALQALGPE-GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDT--------LFYPMV 116 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGG-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHH--------hhCccc
Confidence 4558899999999999987542 46788877642 2 489999999999875332 333221
Q ss_pred cCCCCCCCCCceeeccCccCCchhHHhhcccce
Q 005028 171 AGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 171 ag~kF~~~~~~ykvSGGlhGvG~svvNalS~~~ 203 (718)
.+ ..+-+|+|+++|..+.+.+
T Consensus 117 ~~------------~~~g~GlGL~i~~~~~~~~ 137 (160)
T 1r62_A 117 SG------------REGGTGLGLSIARNLIDQH 137 (160)
T ss_dssp -------------------CHHHHHHHHHHHHT
T ss_pred cC------------CCCCCccCHHHHHHHHHHC
Confidence 11 1133899999999887754
No 51
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.29 E-value=0.00028 Score=65.18 Aligned_cols=80 Identities=25% Similarity=0.428 Sum_probs=50.5
Q ss_pred CCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCC-C--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCC
Q 005028 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (718)
Q Consensus 104 ~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~d-g--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~ 180 (718)
..-|..++.++|+||+.....| .|.|.+..+ + .++|.|||.|||.+..+. +|.....+.
T Consensus 44 ~~~l~~il~nLl~NA~~~~~~~---~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~--------if~~f~~~~------- 105 (150)
T 1ysr_A 44 PAGLRLAVDNAIANAVKHGGAT---LVQLSAVSSRAGVEIAIDDNGSGVPEGERQV--------VFERFSRGS------- 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCS---EEEEEEEEETTEEEEEEEESSSCCCGGGHHH--------HHTSCC----------
T ss_pred HHHHHHHHHHHHHHHHhcCCCc---EEEEEEEecCCEEEEEEEECCCCCCHHHHHH--------HhcccccCC-------
Confidence 4568899999999999975333 788887743 2 499999999999875431 332221111
Q ss_pred ceeeccCccCCchhHHhhcccce
Q 005028 181 GYSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 181 ~ykvSGGlhGvG~svvNalS~~~ 203 (718)
....+-+|+|++++..+.+.+
T Consensus 106 --~~~~~g~GlGL~i~~~~~~~~ 126 (150)
T 1ysr_A 106 --TASHSGSGLGLALVAQQAQLH 126 (150)
T ss_dssp ----------CCCHHHHHHHHHT
T ss_pred --CCCCCCCCcCHHHHHHHHHHc
Confidence 011234799999999988755
No 52
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.29 E-value=0.00041 Score=70.09 Aligned_cols=87 Identities=23% Similarity=0.341 Sum_probs=55.0
Q ss_pred CCCchhHHHHHHHHhhHHHHhcC-CCCeEEEEEeC-CC--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCC
Q 005028 103 GPRGLHHLVYEILDNAVDEAQAG-YASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGS 178 (718)
Q Consensus 103 ~~~gL~~lv~EIldNAvDe~~ag-~~~~I~V~l~~-dg--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~ 178 (718)
++.-|.+++..+|+||++....+ ....|.|.+.. ++ .|+|.|||.|||.+..+. +|.....+.. .
T Consensus 135 d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f~~~~~---~ 203 (258)
T 2c2a_A 135 DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDR--------IFEQFYRVDS---S 203 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTG--------GGSTTCCCC-----
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHh--------hccccccCCC---C
Confidence 34568889999999999876543 23568887774 33 389999999999876432 3433222111 0
Q ss_pred CCceeeccCccCCchhHHhhcccce
Q 005028 179 SSGYSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 179 ~~~ykvSGGlhGvG~svvNalS~~~ 203 (718)
.-...+| .|+|+++|..+.+.+
T Consensus 204 --~~~~~~G-~GLGL~i~~~iv~~~ 225 (258)
T 2c2a_A 204 --LTYEVPG-TGLGLAITKEIVELH 225 (258)
T ss_dssp ----------CCCTHHHHHHHHHHT
T ss_pred --CCCCCCC-cchHHHHHHHHHHHc
Confidence 0011123 799999998887654
No 53
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.28 E-value=0.00033 Score=76.70 Aligned_cols=91 Identities=20% Similarity=0.315 Sum_probs=59.8
Q ss_pred CchhHHHHHHHHhhHHHHhcCC-----CCeEEEEEeCCC---cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCC
Q 005028 105 RGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 176 (718)
Q Consensus 105 ~gL~~lv~EIldNAvDe~~ag~-----~~~I~V~l~~dg---~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~ 176 (718)
.-|.+++.++|+||+.....|. ...|.|.+..++ .|+|.|+|.|||.+..+. +|.....+.+-.
T Consensus 242 ~~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~--------if~~f~~~~~~~ 313 (407)
T 2q8g_A 242 SHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDR--------LFNYMYSTAPRP 313 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGG--------GGCTTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHH--------HhCccccCCCCC
Confidence 4588999999999999887654 447998887533 499999999999875432 444433332210
Q ss_pred CCCCceeeccCccCCchhHHhhcccce
Q 005028 177 GSSSGYSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 177 ~~~~~ykvSGGlhGvG~svvNalS~~~ 203 (718)
..+.......+-.|+|+++|..+.+.+
T Consensus 314 ~~~~~~~~~~~G~GLGL~Ivr~i~~~~ 340 (407)
T 2q8g_A 314 RVETSRAVPLAGFGYGLPISRLYAQYF 340 (407)
T ss_dssp CSSCCSCCCSSCTTCHHHHHHHHHHHT
T ss_pred CccccCCCCCCCcCCCHHHHHHHHHHh
Confidence 000000111134799999999988765
No 54
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.24 E-value=0.0005 Score=74.63 Aligned_cols=108 Identities=21% Similarity=0.308 Sum_probs=65.5
Q ss_pred CCchhHHHHHHHHhhHHHHhcCCC------CeEEEEEeCCC---cEEEEECCCCccccccCCCCccceeeeeeeeccCCC
Q 005028 104 PRGLHHLVYEILDNAVDEAQAGYA------SNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK 174 (718)
Q Consensus 104 ~~gL~~lv~EIldNAvDe~~ag~~------~~I~V~l~~dg---~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~k 174 (718)
+.-|.+++.++|+||+.....|.. +.|.|.+..++ .|+|.|+|.|||.+..+. +|....++.+
T Consensus 236 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~--------iF~~f~~~~~ 307 (388)
T 1gkz_A 236 PMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDR--------VMDYHFTTAE 307 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTT--------TTSTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHH--------hcCcccccCC
Confidence 456889999999999999887542 37999988533 499999999999876432 3333222221
Q ss_pred -----------CCCC---CCceeeccCccCCchhHHhhcccce--EEEE--Ee-CCEEEEEEEe
Q 005028 175 -----------FGGS---SSGYSVSGGLHGVGLSVVNALSESL--EVTV--WR-DGMEYHQKYS 219 (718)
Q Consensus 175 -----------F~~~---~~~ykvSGGlhGvG~svvNalS~~~--~V~v--~r-~gk~y~q~f~ 219 (718)
|+.- ........+-.|+|+++|..+.+.+ .+++ .. .|..+++.+-
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP 371 (388)
T 1gkz_A 308 ASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLR 371 (388)
T ss_dssp ------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEE
T ss_pred CcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEec
Confidence 1100 0000111133799999999998876 2332 22 2455555553
No 55
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.23 E-value=0.00035 Score=62.48 Aligned_cols=45 Identities=29% Similarity=0.458 Sum_probs=33.5
Q ss_pred CchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCC--cEEEEECCCCcccc
Q 005028 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPID 152 (718)
Q Consensus 105 ~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg--~isV~DnGrGIPv~ 152 (718)
.-+..++.|+|+||+..+. .+.|.|.+..++ .++|.|||.|||.+
T Consensus 38 ~~l~~il~nll~Na~k~~~---~~~i~i~~~~~~~~~i~v~D~G~gi~~~ 84 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRHAN---ATSLAINVSVEDDVRVEVVDDGVGISGD 84 (124)
T ss_dssp HHHHHHHHHHHHHHHTCTT---CCEEEEEEEEEEEEEEEEEECCCSSCGG
T ss_pred HHHHHHHHHHHHHHHHhCC---CCEEEEEEEeCCCEEEEEEECCCCCCcc
Confidence 3466777888888877653 457888887433 58999999999965
No 56
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.22 E-value=0.00027 Score=77.80 Aligned_cols=91 Identities=14% Similarity=0.277 Sum_probs=57.7
Q ss_pred CchhHHHHHHHHhhHHHHhcCC------CCeEEEEEeCCC---cEEEEECCCCccccccCCCCccceeeeeeeeccCCCC
Q 005028 105 RGLHHLVYEILDNAVDEAQAGY------ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 175 (718)
Q Consensus 105 ~gL~~lv~EIldNAvDe~~ag~------~~~I~V~l~~dg---~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF 175 (718)
.-|.+++.++|+||+.....|. ...|.|.+..++ .|+|.|+|.|||.+..+. +|.....+.+-
T Consensus 252 ~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~--------iF~~f~~~~~~ 323 (419)
T 1y8o_A 252 SHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDR--------LFNYMYSTAPR 323 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGG--------GGCTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHH--------HhCcccccCCC
Confidence 4588999999999999887654 457999887533 499999999999875432 44433332211
Q ss_pred CCCCCceeeccCccCCchhHHhhcccce
Q 005028 176 GGSSSGYSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 176 ~~~~~~ykvSGGlhGvG~svvNalS~~~ 203 (718)
...+..-....+-.|+|+++|..+.+.+
T Consensus 324 ~~~~~~~~~~~~G~GLGL~I~k~iv~~~ 351 (419)
T 1y8o_A 324 PSLEPTRAAPLAGFGYGLPISRLYARYF 351 (419)
T ss_dssp ---------CC--CTTHHHHHHHHHHHT
T ss_pred CCccccCCCCcCCeecCHHHHHHHHHHh
Confidence 0000001111233899999999988765
No 57
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.19 E-value=0.00035 Score=76.07 Aligned_cols=107 Identities=16% Similarity=0.253 Sum_probs=64.0
Q ss_pred CCchhHHHHHHHHhhHHHHhcCC-----CCeEEEEEeCCC---cEEEEECCCCccccccCCCCccceeeeeeeeccCCCC
Q 005028 104 PRGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 175 (718)
Q Consensus 104 ~~gL~~lv~EIldNAvDe~~ag~-----~~~I~V~l~~dg---~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF 175 (718)
+.-|.+++.++|+||+.....|. ...|.|.+..++ .|+|.|+|.|||.+..+. +|.....+..-
T Consensus 229 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~--------iF~~f~~~~~~ 300 (394)
T 2btz_A 229 PSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIER--------LFSYMYSTAPT 300 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHH--------HTCTTTTCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHH--------HhcccccCCCC
Confidence 34688999999999999987764 247999887543 499999999999875432 44333322211
Q ss_pred CCCCCceeeccCccCCchhHHhhcccce----EEEEEe-CCEEEEEEEe
Q 005028 176 GGSSSGYSVSGGLHGVGLSVVNALSESL----EVTVWR-DGMEYHQKYS 219 (718)
Q Consensus 176 ~~~~~~ykvSGGlhGvG~svvNalS~~~----~V~v~r-~gk~y~q~f~ 219 (718)
...+ ......+-.|+|+++|..+.+.+ .|+... .|..+++.+-
T Consensus 301 ~~~~-~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP 348 (394)
T 2btz_A 301 PQPG-TGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLK 348 (394)
T ss_dssp --------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEE
T ss_pred CCcc-cCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEec
Confidence 0000 00111233799999999998865 232222 2355555553
No 58
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.07 E-value=0.0013 Score=66.45 Aligned_cols=77 Identities=25% Similarity=0.492 Sum_probs=53.5
Q ss_pred CchhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCC---cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCc
Q 005028 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (718)
Q Consensus 105 ~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg---~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~ 181 (718)
.-|..++.++|+||++....+ ..|.|.+..++ .|+|.|||.|||.+..+. +|. .|.
T Consensus 154 ~~l~~il~nLl~NA~~~~~~~--~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~------~~~----- 212 (268)
T 4ew8_A 154 KRLAQTLDHLVENALRQTPPG--GRVTLSARRALGEVRLDVSDTGRGVPFHVQAH--------IFD------RFV----- 212 (268)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT--CEEEEEEEECSSEEEEEEEESSCCCCHHHHTT--------TTS------TTC-----
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CEEEEEEEecCCEEEEEEEcCCCCCCHHHHHH--------HHH------HHh-----
Confidence 458889999999999876443 68888887543 499999999999865432 222 111
Q ss_pred eeeccCccCCchhHHhhcccce
Q 005028 182 YSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 182 ykvSGGlhGvG~svvNalS~~~ 203 (718)
....+-+|+|++++..+.+.+
T Consensus 213 -~~~~~g~GlGL~i~~~~~~~~ 233 (268)
T 4ew8_A 213 -GRDRGGPGLGLALVKALVELH 233 (268)
T ss_dssp -CCSSCCCTTHHHHHHHHHHHT
T ss_pred -cCCCCCCcccHHHHHHHHHHc
Confidence 111234799999998887654
No 59
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.04 E-value=0.00074 Score=66.17 Aligned_cols=63 Identities=21% Similarity=0.104 Sum_probs=42.6
Q ss_pred chhHHHHHHHHhhHHHHhcCCCCeEEEEEeCCC---cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCce
Q 005028 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 182 (718)
Q Consensus 106 gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~dg---~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~y 182 (718)
.+..++.|+|.||+.++ .++.|.|.+..++ .|+|.|||.|||.+..
T Consensus 130 ~l~~il~nll~Na~k~~---~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~---------------------------- 178 (218)
T 3ehh_A 130 ILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS---------------------------- 178 (218)
T ss_dssp HHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCC--------------------------------
T ss_pred HHHHHHHHHHHHHHHhC---CCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC----------------------------
Confidence 35677888888888765 3468888887433 4999999999997531
Q ss_pred eeccCccCCchhHHhhcccce
Q 005028 183 SVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 183 kvSGGlhGvG~svvNalS~~~ 203 (718)
+| .|+|++.+..+.+.+
T Consensus 179 ---~g-~GlGL~~~~~~v~~~ 195 (218)
T 3ehh_A 179 ---FS-KGHGLLGMRERLEFA 195 (218)
T ss_dssp --------CHHHHHHHHHHHT
T ss_pred ---CC-CCCCHHHHHHHHHHc
Confidence 12 689999988877654
No 60
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.89 E-value=0.0012 Score=69.18 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=48.5
Q ss_pred CchhHHHHHHHHhhHHHHhcCCCCeEEEEEeC-CC--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCc
Q 005028 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (718)
Q Consensus 105 ~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~-dg--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~ 181 (718)
.-|.+++.++|.||++... ....|.|.+.. ++ .++|.|||.|||.+..+. +|.. |-..
T Consensus 243 ~~l~~vl~nLl~NA~k~~~--~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~--------if~~------f~~~--- 303 (349)
T 3a0r_A 243 TRIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK--------IFSP------FFTT--- 303 (349)
T ss_dssp HHHHHHHHHHHTHHHHTTC--TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT--------TSSS------CCCC---
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh--------cCCC------CccC---
Confidence 3477889999999998753 34678888874 33 489999999999876432 3322 1111
Q ss_pred eeeccCccCCchhHHhhccc
Q 005028 182 YSVSGGLHGVGLSVVNALSE 201 (718)
Q Consensus 182 ykvSGGlhGvG~svvNalS~ 201 (718)
+ .+-+|+|+++|.-+.+
T Consensus 304 -~--~~g~GlGL~i~~~~v~ 320 (349)
T 3a0r_A 304 -K--TQGTGLGLSICRKIIE 320 (349)
T ss_dssp ---------CCCTHHHHHHH
T ss_pred -C--CCCccchHHHHHHHHH
Confidence 1 1237999999877664
No 61
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=96.84 E-value=0.0006 Score=65.69 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=36.6
Q ss_pred chhHHHHHHHHhhHHHHhc----------CCCCeEEEEEeCC-C--cEEEEECCCCccccc
Q 005028 106 GLHHLVYEILDNAVDEAQA----------GYASNIEVALLAD-N--SVSVADNGRGIPIDL 153 (718)
Q Consensus 106 gL~~lv~EIldNAvDe~~a----------g~~~~I~V~l~~d-g--~isV~DnGrGIPv~~ 153 (718)
-+.+++.++|+||+.++.. .....|.|.+..+ + .|+|.|||.|||.+.
T Consensus 47 ~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~ 107 (189)
T 1i58_A 47 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 107 (189)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHH
Confidence 3555599999999998742 2456888888753 3 499999999999764
No 62
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.74 E-value=0.0011 Score=72.08 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhhHHHHhc--------C--CCCeEEEEEeCC-C--cEEEEECCCCccccc
Q 005028 107 LHHLVYEILDNAVDEAQA--------G--YASNIEVALLAD-N--SVSVADNGRGIPIDL 153 (718)
Q Consensus 107 L~~lv~EIldNAvDe~~a--------g--~~~~I~V~l~~d-g--~isV~DnGrGIPv~~ 153 (718)
+..++.++|.||+|+... | ...+|.|.+..+ + .|+|.|||+|||.+.
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~ 166 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 166 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHH
Confidence 444599999999998732 2 356788888743 3 399999999999875
No 63
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=96.61 E-value=0.004 Score=68.09 Aligned_cols=83 Identities=25% Similarity=0.272 Sum_probs=56.1
Q ss_pred hhHHHHHHHHhhHHHHhcC-CCCeEEEEEeC--CC--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCc
Q 005028 107 LHHLVYEILDNAVDEAQAG-YASNIEVALLA--DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (718)
Q Consensus 107 L~~lv~EIldNAvDe~~ag-~~~~I~V~l~~--dg--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~ 181 (718)
+.-++.|++.||+.++... ....|.|.+.. ++ .|+|+|+|+|+|.. +..
T Consensus 298 ~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------------------~~~--- 351 (399)
T 3ke6_A 298 IVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------------------DGA--- 351 (399)
T ss_dssp HHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC---------------------------------
T ss_pred HHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------------------CCC---
Confidence 5568899999999997543 35678888773 33 48999999999864 010
Q ss_pred eeeccCccCCchhHHhhcccceEEEEEeCCEEEEEEEec
Q 005028 182 YSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSR 220 (718)
Q Consensus 182 ykvSGGlhGvG~svvNalS~~~~V~v~r~gk~y~q~f~~ 220 (718)
+-+|.|+.+|..|++.+.+....+|+....+|.-
T Consensus 352 -----~~~G~GL~lv~~l~~~~~~~~~~~G~~v~~~~~~ 385 (399)
T 3ke6_A 352 -----RGRGRGLAMAEALVSEARIMHGAGGTTATLTHRL 385 (399)
T ss_dssp ----------CHHHHHTTSSEEEEEEETTEEEEEEEEEC
T ss_pred -----CCCCcHHHHHHHHHHheeeEECCCcEEEEEEEEc
Confidence 2368999999999998887665677777777653
No 64
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=96.32 E-value=0.002 Score=63.72 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=52.0
Q ss_pred CCchhHHHHHHHHhhHHHHhcCCCCeEEEEEeC-CC--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCC
Q 005028 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (718)
Q Consensus 104 ~~gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~-dg--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~ 180 (718)
..-|..++.++|+||+.... ....|.|.+.. ++ .|+|.|||.|||.+..+. +|. .|-..
T Consensus 121 ~~~l~~il~nLl~NA~~~~~--~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~--------if~------~~~~~-- 182 (244)
T 3d36_A 121 REKFRQCLLNVMKNAIEAMP--NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLER--------LGE------PYFTT-- 182 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTCT--TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH--------TTS------TTCCS--
T ss_pred HHHHHHHHHHHHHHHHHhcc--CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHH--------Hhc------ccccC--
Confidence 34578888888898888753 24578887774 33 499999999999765321 221 11111
Q ss_pred ceeeccCccCCchhHHhhcccce
Q 005028 181 GYSVSGGLHGVGLSVVNALSESL 203 (718)
Q Consensus 181 ~ykvSGGlhGvG~svvNalS~~~ 203 (718)
+-. +-+|+|+++|..+.+.+
T Consensus 183 --~~~-~g~GlGL~i~~~i~~~~ 202 (244)
T 3d36_A 183 --KGV-KGTGLGMMVVYRIIESM 202 (244)
T ss_dssp --SGG-GCCSCHHHHHHHHHHHT
T ss_pred --CCC-CCcchhHHHHHHHHHHc
Confidence 111 23799999998887654
No 65
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=95.32 E-value=0.0077 Score=61.07 Aligned_cols=77 Identities=25% Similarity=0.224 Sum_probs=47.5
Q ss_pred chhHHHHHHHHhhHHHHhcCCCCeEEEEEeC-CC--cEEEEECCCCccccccCCCCccceeeeeeeeccCCCCCCCCCce
Q 005028 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 182 (718)
Q Consensus 106 gL~~lv~EIldNAvDe~~ag~~~~I~V~l~~-dg--~isV~DnGrGIPv~~~~~~g~~~~E~v~t~lhag~kF~~~~~~y 182 (718)
-+.+++.-+|.||++.... ...|.|.+.. ++ .|+|.|+|.|||++.+ +|-.+. ..|...
T Consensus 146 ~~~qvl~NLl~NA~~a~~~--gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~----------~~~~~f--~~~~~~---- 207 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPA--GGVATVKGVAADGRFSIIADAKGPRARLRPE----------VLAGLK--GEPLAE---- 207 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTT--CCEEEEEEEEETTEEEEEEEEESTTCCCCHH----------HHHHHT--TCCCCS----
T ss_pred HHHHHHHHHHHHHHHhcCC--CCeEEEEEEEECCEEEEEEEEcCCCCCCCHH----------HHHHhc--CCCCCC----
Confidence 3556677777777765433 4678888874 33 4899999999887532 222221 122211
Q ss_pred eeccCccCCchhHHhhcccc
Q 005028 183 SVSGGLHGVGLSVVNALSES 202 (718)
Q Consensus 183 kvSGGlhGvG~svvNalS~~ 202 (718)
+. +| +|+|+++|-.+-+.
T Consensus 208 ~~-~G-~GLGLai~~~iv~~ 225 (247)
T 4fpp_A 208 GL-GG-PWVQAAYLNALVRA 225 (247)
T ss_dssp SC-HH-HHHHHHHHHHHHHH
T ss_pred CC-CC-ccHHHHHHHHHHHH
Confidence 11 23 79999988776653
No 66
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=82.39 E-value=7.3 Score=44.04 Aligned_cols=99 Identities=14% Similarity=0.258 Sum_probs=64.6
Q ss_pred eEEEEEEEecCCCC---CceeeeeccceecC-CCcchHHHHHHHHHHHHHHHH-hhccCCCCCCCCCCHHHHhhccEEEE
Q 005028 330 ITIDLALQWCSDAY---SDTMLGYANSIRTI-DGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVREGLTCII 404 (718)
Q Consensus 330 ~~veval~~s~~~~---~~~~~SFVN~I~T~-~GGTHv~g~~~alt~~in~~~-kk~~~~k~k~~~l~~~dIregL~~vV 404 (718)
.-||+|+.|.-+.- .-.++-|+|-|+.. +.|. .++++++...- +..++. + =...+.++|
T Consensus 350 f~vE~~~a~gg~~~~~~~~~i~r~aNrvpl~~~~~~------~~~~~~~~~~~w~~y~~~------~----~~~~~~~~v 413 (530)
T 2zbk_B 350 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKS------DVIWKVVEELDWKRYGIE------S----DQYQMVVMV 413 (530)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECTTGGG------CHHHHHHHHSCTTSSSCC------C----SSBCEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEecCCceeecCCc------chhhhhhccCChhhcCcC------C----CCCCEEEEE
Confidence 55899999962211 24799999999986 4442 45666664331 122221 1 013678999
Q ss_pred EEeecCCCCCCccccccCC-chhhhhhhhhHH---HHHHHHHhh
Q 005028 405 SVRVPNPEFEGQTKTRLGN-PEVRKVVDQSVQ---EYLTEYLEL 444 (718)
Q Consensus 405 svki~nP~FegQTKekL~n-~ev~~~v~~~v~---~~l~~~l~~ 444 (718)
++--++-.|.|-.|+.+++ ||+...+...+. ..|..||.+
T Consensus 414 ~i~st~vp~~~~~Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~ 457 (530)
T 2zbk_B 414 HLCSTKIPYKSAGKESIAEVENIEKEIKNALMEVARKLKQYLSE 457 (530)
T ss_dssp EEEESSCCBSSSSCSCBCCCHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred EeccCCCCcCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 666555544443 466666654
No 67
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=72.48 E-value=3.7 Score=40.12 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=28.4
Q ss_pred HHHHhhHHHHhc-CCCCeEEEEEeCC--C---cEEEEECCCCccccc
Q 005028 113 EILDNAVDEAQA-GYASNIEVALLAD--N---SVSVADNGRGIPIDL 153 (718)
Q Consensus 113 EIldNAvDe~~a-g~~~~I~V~l~~d--g---~isV~DnGrGIPv~~ 153 (718)
+.+.||++++.. .....|.|.+..+ + .|+|.|+|.|||.+.
T Consensus 115 ~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~ 161 (192)
T 1ixm_A 115 RKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSA 161 (192)
T ss_dssp HHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGG
T ss_pred HHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHH
Confidence 444455554422 3467899988864 3 499999999999875
No 68
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=45.83 E-value=44 Score=38.46 Aligned_cols=91 Identities=13% Similarity=0.281 Sum_probs=56.2
Q ss_pred eEEEEEEEecCCC---CCceeeeeccceec-CCCcchHHHHHHHHHHHHHHHH-hhccCCCCCCCCCCHHHHh-hccEEE
Q 005028 330 ITIDLALQWCSDA---YSDTMLGYANSIRT-IDGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVR-EGLTCI 403 (718)
Q Consensus 330 ~~veval~~s~~~---~~~~~~SFVN~I~T-~~GGTHv~g~~~alt~~in~~~-kk~~~~k~k~~~l~~~dIr-egL~~v 403 (718)
..||+|++|--+. -.-.++-|+|-||- .+.|. .++++++..+- +..++.... ..+- .-+.+|
T Consensus 353 fivE~~ia~gg~~~~~~~~~~~rfanrvpll~~~g~------~~~t~~~~~~~w~~y~~~~~~------~~~p~~~~~~~ 420 (621)
T 2q2e_B 353 FVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGG------CVTTHAVEDIKWKQYGLNQPG------GGIPVGPVILL 420 (621)
T ss_dssp EEEEEEEEESSSSCSSSCCCEEEEETTBCCCSCCTT------CHHHHHHHHSCCTTTTCCCCS------SSSCCSSCCEE
T ss_pred eEEEEeeecCCCCCCCCceeEEEEccCCceeecCCc------cHHHHHHHhCChhhcCcCCCC------CCCCCCCEEEE
Confidence 5689999996221 12478999999983 34444 34566665432 222221110 0011 246889
Q ss_pred EEEeecCCCCCCccccccCC-chhhhhhhh
Q 005028 404 ISVRVPNPEFEGQTKTRLGN-PEVRKVVDQ 432 (718)
Q Consensus 404 Vsvki~nP~FegQTKekL~n-~ev~~~v~~ 432 (718)
|++--++-.|.|--|+.+++ ||+..-|+.
T Consensus 421 v~~~st~vp~~~~~ke~ia~~~ei~~ei~~ 450 (621)
T 2q2e_B 421 IHVASINVPFTSESKDAIADIPVIKEEIDL 450 (621)
T ss_dssp EEEECSSCCBSSSSSSSBCCCHHHHHHHHH
T ss_pred EEEeecCCCcCCcchhhhcCCHHHHHHHHH
Confidence 99999999999999999985 455444433
No 69
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=35.98 E-value=10 Score=34.19 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.6
Q ss_pred ceee-EEEeecCCCCCchhhhhHHHHHH
Q 005028 570 RYHK-IIILTDADVDGAHIRTLLLTFFY 596 (718)
Q Consensus 570 RYgk-IiImTDaDvDG~HI~~Llltff~ 596 (718)
||.. |||+||.|.=|-.|+.-+...|-
T Consensus 60 ~~~~~VIIltD~D~aGe~ir~~i~~~l~ 87 (118)
T 1t6t_1 60 GKWEKVILLFDLDTHGERINQKMKELLS 87 (118)
T ss_dssp TTCSEEEECCCSSHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCChhHHHHHHHHHHhcC
Confidence 4666 99999999999999988876653
No 70
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=24.99 E-value=18 Score=32.63 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=39.7
Q ss_pred ceeeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCHHHHHHHHHhCCCCCcccce
Q 005028 570 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQ 649 (718)
Q Consensus 570 RYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~v~~~~tPL~kv~~gk~~~y~ys~~E~~~~~~~~~~~~~~~ik 649 (718)
.+..|||+||.|.=|.-||..|...| |. ..|.|+...|. |=+ --+.+++.+.+.+.. ......
T Consensus 49 ~~r~VIi~TD~D~~GekIRk~i~~~l----p~---~~hafi~r~~~-----gVE---~a~~~~I~~aL~~~~--~~~~~~ 111 (119)
T 2fcj_A 49 EGYDVYLLADADEAGEKLRRQFRRMF----PE---AEHLYIDRAYR-----EVA---AAPIWHLAQVLLRAR--FDVRIE 111 (119)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHC----TT---SEEECCCTTTC-----STT---TSCHHHHHHHHHHTT--CCBCGG
T ss_pred cCCCEEEEECCCccHHHHHHHHHHHC----CC---CcEEeccCCcc-----Ccc---cCCHHHHHHHHHhcc--cchhhh
Confidence 46789999999999999998775444 33 25777777664 211 134556666655532 112233
Q ss_pred Ee-eccCC
Q 005028 650 RF-KGLGE 656 (718)
Q Consensus 650 ry-KGLGe 656 (718)
|. ||-||
T Consensus 112 ~~~~~~~~ 119 (119)
T 2fcj_A 112 SLMRGRGE 119 (119)
T ss_dssp GTC-----
T ss_pred hhhcccCC
Confidence 33 66654
Done!