BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005031
(718 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W27|A Chain A, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
Crispum
pdb|1W27|B Chain B, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
Crispum
Length = 714
Score = 1224 bits (3167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/720 (82%), Positives = 645/720 (89%), Gaps = 16/720 (2%)
Query: 4 GATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVN 63
GATT NGH NG C D L WG+ AE + GSHL+EVK+MVAEYRKPVV
Sbjct: 6 GATT-NGHVNGNGMDFCMKTE------DPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVK 58
Query: 64 LGGETLTVAQVAAIAT---SSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGA 120
LGGETLT++QVAAI+ S VELSE+AR GVKASSDWVM+SMNKGTDSYGVTTGFGA
Sbjct: 59 LGGETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGA 118
Query: 121 TSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRF 180
TSHRRTK GGALQKELIRFLNAGIFGNG S +TLPHSATRAAMLVR+NTLLQGYSGIRF
Sbjct: 119 TSHRRTKQGGALQKELIRFLNAGIFGNG--SDNTLPHSATRAAMLVRINTLLQGYSGIRF 176
Query: 181 EILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQE 240
EILEAITK LN NITPCLPLRGTIT DLVPLSYIAGLLTGRPNSKA GP G I+ +E
Sbjct: 177 EILEAITKFLNQNITPCLPLRGTITX--DLVPLSYIAGLLTGRPNSKAVGPTGVILSPEE 234
Query: 241 ASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQG 298
A K AG GFFELQPKEGLALVNGTAVGSG+ASMVLFEAN LA+L+E++SAIFAEVMQG
Sbjct: 235 AFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQG 294
Query: 299 KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTS 358
KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS+YV AA+KLHE+DPLQKPKQDRYALRTS
Sbjct: 295 KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTS 354
Query: 359 PQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAI 418
PQWLGPQIEVIR +TK IEREINSVNDNPLIDVSRNKA+HGGNFQGTPIGVSMDNTRLAI
Sbjct: 355 PQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAI 414
Query: 419 AAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPV 478
AAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPV
Sbjct: 415 AAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPV 474
Query: 479 TNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTV 538
TNHVQSAEQHNQDVNSLGLISSRKT+EAV+ILKLMS+TFLV LCQAIDLRHLEENLK TV
Sbjct: 475 TNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTV 534
Query: 539 KNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQV 598
KNTVS VAK+VLT+G +GELHPSRFCEKDLL+ DRE++FAYIDDPCSATYPLMQKLRQ
Sbjct: 535 KNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQT 594
Query: 599 LVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECR 658
LVEHAL NG+NE+ ++SIFQKIA FE+ELK +LPKEVE+AR +E+G+P IPNRI+ECR
Sbjct: 595 LVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARAALESGNPAIPNRIEECR 654
Query: 659 SYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 718
SYPLY+ VR+ELG+ +LTGEKVTSPGEEF+KVF AM +G+IIDP+LECL WNGAPLPIC
Sbjct: 655 SYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC 714
>pdb|3NZ4|A Chain A, Crystal Structure Of A Taxus Phenylalanine Aminomutase
pdb|3NZ4|B Chain B, Crystal Structure Of A Taxus Phenylalanine Aminomutase
Length = 696
Score = 586 bits (1510), Expect = e-167, Method: Compositional matrix adjust.
Identities = 314/681 (46%), Positives = 434/681 (63%), Gaps = 22/681 (3%)
Query: 45 SHLEEVKRMVAEYR--KPVVNLGGETLTVAQVAAIATS-STNVEL-SESAREGVKASSDW 100
SH++++ ++ + K + G +TVA VAA+A V L +E R V+ S W
Sbjct: 9 SHVKDILGLINTFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSW 68
Query: 101 VMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESS-HTLPHSA 159
V G D YGVTTGFGA S RRT LQ+ LIR L AG+F G SS LP +
Sbjct: 69 VQRKAEDGADIYGVTTGFGACSSRRTNQLSELQESLIRCLLAGVFTKGCASSVDELPATV 128
Query: 160 TRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGL 219
TR+AML+R+N+ G SGIR+E++EA+ KLLN N++P +PLRG++ S DL+PL+YIAGL
Sbjct: 129 TRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAGL 186
Query: 220 LTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEAN 279
L G+P+ A + + A EA + G F+LQ KEGLALVNGT+ + LAS V+++AN
Sbjct: 187 LIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATALASTVMYDAN 246
Query: 280 NLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKL 339
L LL E L +F EV+ G+ EF L HK+K HPGQIE+A ++E +L S + + +++
Sbjct: 247 VLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQDLSREY 306
Query: 340 HEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHG 399
+ ID L+KPKQDRYALR+SPQWL P ++ IR AT ++E E+NS NDNP+ID + ++ALHG
Sbjct: 307 YSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHG 366
Query: 400 GNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKG 459
NFQG+ +G MD R+A+A +GKL+FAQF+EL+ ++Y+NGLP NLS G + S+DYG KG
Sbjct: 367 ANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKG 426
Query: 460 AEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLV 519
+IAMA+Y SELQ+LANPVT HV SAEQHNQD+NSL LIS+RKT EA+DILKLM ++ L
Sbjct: 427 LDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTDEALDILKLMIASHLT 486
Query: 520 ALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFA 579
A+CQA+DLR LEE L V+N VS +A + G + + LL A V+
Sbjct: 487 AMCQAVDLRQLEEALVKVVENVVSTLADE---CGLPND------TKARLLYVAKAVPVYT 537
Query: 580 YIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENA 639
Y++ PC T PL+ L+Q L + + ++ ++A FE+ L L E+
Sbjct: 538 YLESPCDPTLPLLLGLKQSCFGSILALHKKDGIETDTLVDRLAEFEKRLSDRLENEMTAV 597
Query: 640 RQTVE-NGSPTIPN-----RIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTA 693
R E G T N RI+ R P YR VR+EL + ++ + +P E+ KVF A
Sbjct: 598 RVLYEKKGHKTADNNDALVRIQGSRFLPFYRFVRDELDTGVMSARREQTPQEDVQKVFDA 657
Query: 694 MCQGKIIDPMLECLREWNGAP 714
+ G+I P+L CL+ + G P
Sbjct: 658 IADGRITVPLLHCLQGFLGQP 678
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|B Chain B, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|C Chain C, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|D Chain D, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|4BAB|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
Length = 705
Score = 585 bits (1507), Expect = e-167, Method: Compositional matrix adjust.
Identities = 313/681 (45%), Positives = 434/681 (63%), Gaps = 22/681 (3%)
Query: 45 SHLEEVKRMVAEYR--KPVVNLGGETLTVAQVAAIATS-STNVEL-SESAREGVKASSDW 100
SH++++ ++ + K + G +TVA VAA+A V L +E R V+ S W
Sbjct: 29 SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSW 88
Query: 101 VMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESS-HTLPHSA 159
V G D YGVTTGFGA S RRT LQ+ LIR L AG+F G S LP +A
Sbjct: 89 VQRKAEDGADIYGVTTGFGACSSRRTNRLSELQESLIRCLLAGVFTKGCAPSVDELPATA 148
Query: 160 TRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGL 219
TR+AML+R+N+ G SGIR+E++EA+ KLLN N++P +PLRG++ S DL+PL+YIAGL
Sbjct: 149 TRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAGL 206
Query: 220 LTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEAN 279
L G+P+ A + + A EA + G F+LQ KEGLALVNGT+ + +AS V+++AN
Sbjct: 207 LIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDAN 266
Query: 280 NLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKL 339
L LL E L +F EV+ G+ EF L HK+K HPGQIE+A ++E +L S + +++
Sbjct: 267 VLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREY 326
Query: 340 HEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHG 399
+ ID L+KPKQDRYALR+SPQWL P ++ IR AT ++E E+NS NDNP+ID + ++ALHG
Sbjct: 327 YSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHG 386
Query: 400 GNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKG 459
NFQG+ +G MD R+A+A +GKL+FAQF+EL+ ++Y+NGLP NLS G + S+DYG KG
Sbjct: 387 ANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKG 446
Query: 460 AEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLV 519
+IAMA+Y SELQ+LANPVT HV SAEQHNQD+NSL LIS+RKT EA+DILKLM ++ L
Sbjct: 447 LDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLT 506
Query: 520 ALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFA 579
A+CQA+DLR LEE L V+N VS +A + G + + LL A V+
Sbjct: 507 AMCQAVDLRQLEEALVKVVENVVSTLADE---CGLPND------TKARLLYVAKAVPVYT 557
Query: 580 YIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENA 639
Y++ PC T PL+ L+Q + L + + ++ ++A FE+ L L E+
Sbjct: 558 YLESPCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLAEFEKRLSDRLENEMTAV 617
Query: 640 RQTVE-NGSPTIPN-----RIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTA 693
R E G T N RI+ + P YR VREEL + ++ + +P E+ KVF A
Sbjct: 618 RVLYEKKGHKTADNNDALVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDA 677
Query: 694 MCQGKIIDPMLECLREWNGAP 714
+ G+I P+L CL+ + G P
Sbjct: 678 IADGRITVPLLHCLQGFLGQP 698
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
Length = 705
Score = 583 bits (1502), Expect = e-166, Method: Compositional matrix adjust.
Identities = 312/681 (45%), Positives = 433/681 (63%), Gaps = 22/681 (3%)
Query: 45 SHLEEVKRMVAEYR--KPVVNLGGETLTVAQVAAIATS-STNVEL-SESAREGVKASSDW 100
SH++++ ++ + K + G +TVA VAA+A V L +E R V+ S W
Sbjct: 29 SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSW 88
Query: 101 VMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESS-HTLPHSA 159
V G D YGVTTGFGA S RT LQ+ LIR L AG+F G S LP +A
Sbjct: 89 VQRKAEDGADIYGVTTGFGACSSSRTNRLSELQESLIRCLLAGVFTKGCAPSVDELPATA 148
Query: 160 TRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGL 219
TR+AML+R+N+ G SGIR+E++EA+ KLLN N++P +PLRG++ S DL+PL+YIAGL
Sbjct: 149 TRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAGL 206
Query: 220 LTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEAN 279
L G+P+ A + + A EA + G F+LQ KEGLALVNGT+ + +AS V+++AN
Sbjct: 207 LIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDAN 266
Query: 280 NLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKL 339
L LL E L +F EV+ G+ EF L HK+K HPGQIE+A ++E +L S + +++
Sbjct: 267 VLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREY 326
Query: 340 HEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHG 399
+ ID L+KPKQDRYALR+SPQWL P ++ IR AT ++E E+NS NDNP+ID + ++ALHG
Sbjct: 327 YSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHG 386
Query: 400 GNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKG 459
NFQG+ +G MD R+A+A +GKL+FAQF+EL+ ++Y+NGLP NLS G + S+DYG KG
Sbjct: 387 ANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKG 446
Query: 460 AEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLV 519
+IAMA+Y SELQ+LANPVT HV SAEQHNQD+NSL LIS+RKT EA+DILKLM ++ L
Sbjct: 447 LDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLT 506
Query: 520 ALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFA 579
A+CQA+DLR LEE L V+N VS +A + G + + LL A V+
Sbjct: 507 AMCQAVDLRQLEEALVKVVENVVSTLADE---CGLPND------TKARLLYVAKAVPVYT 557
Query: 580 YIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENA 639
Y++ PC T PL+ L+Q + L + + ++ ++A FE+ L L E+
Sbjct: 558 YLESPCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLAEFEKRLSDRLENEMTAV 617
Query: 640 RQTVE-NGSPTIPN-----RIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTA 693
R E G T N RI+ + P YR VREEL + ++ + +P E+ KVF A
Sbjct: 618 RVLYEKKGHKTADNNDALVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDA 677
Query: 694 MCQGKIIDPMLECLREWNGAP 714
+ G+I P+L CL+ + G P
Sbjct: 678 IADGRITVPLLHCLQGFLGQP 698
>pdb|1Y2M|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
Length = 716
Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 254/712 (35%), Positives = 364/712 (51%), Gaps = 46/712 (6%)
Query: 28 SSGDALNWGVMAETLKGSHL--------EEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT 79
S+ A+N + GSHL + V++ +A + L G +L + V + A
Sbjct: 18 SAKQAVNGASTNLAVAGSHLPTTQVTQVDIVEKXLAAPTDSTLELDGYSLNLGDVVSAAR 77
Query: 80 SSTNVELSES--AREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELI 137
V + +S R + S +++ ++ YGVTTGFG ++ RT++ +LQK L+
Sbjct: 78 KGRPVRVKDSDEIRSKIDKSVEFLRSQLSXSV--YGVTTGFGGSADTRTEDAISLQKALL 135
Query: 138 RFLNAGIF---------GNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITK 188
G+ G G E+S LP R A +RVN+L +G+S +R +LEA+T
Sbjct: 136 EHQLCGVLPSSFDSFRLGRGLENS--LPLEVVRGAXTIRVNSLTRGHSAVRLVVLEALTN 193
Query: 189 LLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPN---GEIIDAQEASKQA 245
LNH ITP +PLRGTI+ASGDL PLSYIA ++G P+SK + +I+ A+EA
Sbjct: 194 FLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAXALF 253
Query: 246 GFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP-EFTD 304
L PKEGL LVNGTAV + A++ L +A+ L+LLS+ L+A E G F
Sbjct: 254 NLEPVVLGPKEGLGLVNGTAVSASXATLALHDAHXLSLLSQSLTAXTVEAXVGHAGSFHP 313
Query: 305 HLTHKLKHHPGQIEAAAIMEHILDGSSY-VNAAKKLHEIDPLQKPKQDRYALRTSPQWLG 363
L + HP QIE A + +L+GS + V+ +++ D +QDRY LRTSPQWLG
Sbjct: 314 FLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLG 373
Query: 364 PQIEVIRFATKSIEREI-NSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIG 422
P + + A + E S DNPLIDV + HGGNFQ + + + TRL +A IG
Sbjct: 374 PLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQAAAVANTXEKTRLGLAQIG 433
Query: 423 KLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHV 482
KL F Q +E +N N GLPS L+ +PSL Y KG +IA A+Y SEL LANPVT HV
Sbjct: 434 KLNFTQLTEXLNAGXNRGLPSCLA-AEDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHV 492
Query: 483 QSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTV 542
Q AE NQ VNSL LIS+R+T E+ D+L L+ +T L + QAIDLR +E K +
Sbjct: 493 QPAEXANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFKKQFGPAI 552
Query: 543 SQVAKKVLTVGASGELHPSRFCEKDLLKAADR-EHVFAYIDDPCSATYPLMQKLRQVLVE 601
+ + +G EK A R E +Y D + +VE
Sbjct: 553 VSLIDQHFGSAXTGSNLRDELVEKVNKTLAKRLEQTNSY--DLVPRWHDAFSFAAGTVVE 610
Query: 602 HALNNGENEKTANSSIFQKIAAFEEELKTVLPKEV-ENARQTVENGSPTIPNRIKECRSY 660
+ + N+ K+AA E + L ++V E SP + R+
Sbjct: 611 VLSSTSLSLAAVNA---WKVAAAESAIS--LTRQVRETFWSAASTSSPAL--SYLSPRTQ 663
Query: 661 PLYRLVREELG-----SNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 707
LY VREELG + G++ + G K++ A+ G+I + +L+ L
Sbjct: 664 ILYAFVREELGVKARRGDVFLGKQEVTIGSNVSKIYEAIKSGRINNVLLKXL 715
>pdb|1T6J|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6J|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|C Chain C, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|D Chain D, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|E Chain E, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|F Chain F, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|G Chain G, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|H Chain H, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
Length = 714
Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 252/712 (35%), Positives = 361/712 (50%), Gaps = 48/712 (6%)
Query: 28 SSGDALNWGVMAETLKGSHL--------EEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT 79
S+ A+N + GSHL + V++ +A + L G +L + V + A
Sbjct: 18 SAKQAVNGASTNLAVAGSHLPTTQVTQVDIVEKXLAAPTDSTLELDGYSLNLGDVVSAAR 77
Query: 80 SSTNVELSES--AREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELI 137
V + +S R + S +++ ++ YGVTTGFG ++ RT++ +LQK L+
Sbjct: 78 KGRPVRVKDSDEIRSKIDKSVEFLRSQLSXSV--YGVTTGFGGSADTRTEDAISLQKALL 135
Query: 138 RFLNAGIF---------GNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITK 188
G+ G G E+S LP R A +RVN+L +G+S +R +LEA+T
Sbjct: 136 EHQLCGVLPSSFDSFRLGRGLENS--LPLEVVRGAXTIRVNSLTRGHSAVRLVVLEALTN 193
Query: 189 LLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNG---EIIDAQEASKQA 245
LNH ITP +PLRGTI S DL PLSYIA ++G P+SK + +I+ A+EA
Sbjct: 194 FLNHGITPIVPLRGTI--SXDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAXALF 251
Query: 246 GFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP-EFTD 304
L PKEGL LVNGTAV + A++ L +A+ L+LLS+ L+A E G F
Sbjct: 252 NLEPVVLGPKEGLGLVNGTAVSASXATLALHDAHXLSLLSQSLTAXTVEAXVGHAGSFHP 311
Query: 305 HLTHKLKHHPGQIEAAAIMEHILDGSSY-VNAAKKLHEIDPLQKPKQDRYALRTSPQWLG 363
L + HP QIE A + +L+GS + V+ +++ D +QDRY LRTSPQWLG
Sbjct: 312 FLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLG 371
Query: 364 PQIEVIRFATKSIEREI-NSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIG 422
P + + A + E S DNPLIDV + HGGNFQ + + + TRL +A IG
Sbjct: 372 PLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQAAAVANTXEKTRLGLAQIG 431
Query: 423 KLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHV 482
KL F Q +E +N N GLPS L+ +PSL Y KG +IA A+Y SEL LANPVT HV
Sbjct: 432 KLNFTQLTEXLNAGXNRGLPSCLAA-EDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHV 490
Query: 483 QSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTV 542
Q AE NQ VNSL LIS+R+T E+ D+L L+ +T L + QAIDLR +E K +
Sbjct: 491 QPAEXANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFKKQFGPAI 550
Query: 543 SQVAKKVLTVGASGELHPSRFCEKDLLKAADR-EHVFAYIDDPCSATYPLMQKLRQVLVE 601
+ + +G EK A R E +Y D + +VE
Sbjct: 551 VSLIDQHFGSAXTGSNLRDELVEKVNKTLAKRLEQTNSY--DLVPRWHDAFSFAAGTVVE 608
Query: 602 HALNNGENEKTANSSIFQKIAAFEEELKTVLPKEV-ENARQTVENGSPTIPNRIKECRSY 660
+ + N+ K+AA E + L ++V E SP + R+
Sbjct: 609 VLSSTSLSLAAVNA---WKVAAAESAIS--LTRQVRETFWSAASTSSPAL--SYLSPRTQ 661
Query: 661 PLYRLVREELG-----SNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 707
LY VREELG + G++ + G K++ A+ G+I + +L+ L
Sbjct: 662 ILYAFVREELGVKARRGDVFLGKQEVTIGSNVSKIYEAIKSGRINNVLLKXL 713
>pdb|2NYF|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Nostoc Punctiforme
Length = 567
Score = 269 bits (688), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 262/478 (54%), Gaps = 24/478 (5%)
Query: 61 VVNLGGETLTVAQVAAIATSSTNVELSESAR--EGVKASSDWVMESMNKGTDSYGVTTGF 118
+V +G LT+ +V +A T V L+++A GV+AS D++ ++ YGVT+GF
Sbjct: 25 IVTVGDRNLTIDEVVNVARHGTQVRLTDNADVIRGVQASCDYINNAVETAQPIYGVTSGF 84
Query: 119 GATSHR--RTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYS 176
G + + LQ LI FL +G + + L + RAAML+R N+ L G S
Sbjct: 85 GGMADVVISREQAAELQTNLIWFLKSG-------AGNKLSLADVRAAMLLRANSHLYGAS 137
Query: 177 GIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEII 236
GIR E+++ I LN +TP + G+I DLVPLSYI G L G S +G+ +
Sbjct: 138 GIRLELIQRIETFLNAGVTPHVYEFGSI--GXDLVPLSYITGALIGLDPSFTVDFDGKEM 195
Query: 237 DAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVM 296
DA A + G +LQPKEGLA++NGT+V +G+A+ +++A L L+ + A+ + +
Sbjct: 196 DAVTALSRLGLPKLQLQPKEGLAMMNGTSVMTGIAANCVYDAKVLLALTMGVHALAIQGL 255
Query: 297 QGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK-----QD 351
G + H+ K HPGQ+ A M +L SS V E+D + + QD
Sbjct: 256 YGTNQSFHPFIHQCKPHPGQLWTADQMFSLLKDSSLVR-----EELDGKHEYRGKDLIQD 310
Query: 352 RYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSM 411
RY+LR Q++GP ++ + TK IE E+NSV DNPLIDV + HGGNF G +GV+M
Sbjct: 311 RYSLRCLAQFIGPIVDGVSEITKQIEVEMNSVTDNPLIDVENQVSYHGGNFLGQYVGVTM 370
Query: 412 DNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSEL 471
D R I + K + Q + LV+ ++NGLP +L G + ++ G KG +I+ S L
Sbjct: 371 DRLRYYIGLLAKHIDVQIALLVSPEFSNGLPPSLVGNSDRKVNMGLKGLQISGNSIMPLL 430
Query: 472 QFLANPVTNHVQS-AEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 528
F N + + + AEQ NQ++NS G IS+ T +VDI + + L+ QA+DLR
Sbjct: 431 SFYGNSLADRFPTHAEQFNQNINSQGYISANLTRRSVDIFQNYMAIALMFGVQAVDLR 488
>pdb|2NYN|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
Length = 565
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 173/500 (34%), Positives = 266/500 (53%), Gaps = 24/500 (4%)
Query: 62 VNLGGETLTVAQVAAIATSSTNVELSESAR--EGVKASSDWVMESMNKGTDSYGVTTGFG 119
V +G + LT+ VA +A + T V L+ + +G++AS D++ ++ G YGVT+GFG
Sbjct: 26 VIIGNQKLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFG 85
Query: 120 ATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSG 177
++ A LQ L+ FL G + + LP + RAAML+R N+ ++G SG
Sbjct: 86 GMANVAISREQASELQTNLVWFLKTG-------AGNKLPLADVRAAMLLRANSHMRGASG 138
Query: 178 IRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIID 237
IR E+++ + LN +TP + G+I DLVPLSYI G L G S NG+ +D
Sbjct: 139 IRLELIKRMEIFLNAGVTPYVYEFGSI--GXDLVPLSYITGSLIGLDPSFKVDFNGKEMD 196
Query: 238 AQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQ 297
A A +Q L PKEGLA++NGT+V +G+A+ +++ L ++ + A+ + +
Sbjct: 197 APTALRQLNLSPLTLLPKEGLAMMNGTSVMTGIAANCVYDTQILTAIAMGVHALDIQALN 256
Query: 298 GKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK-----QDR 352
G + H K HPGQ+ AA M +L S V E+D + QDR
Sbjct: 257 GTNQSFHPFIHNSKPHPGQLWAADQMISLLANSQLVR-----DELDGKHDYRDHELIQDR 311
Query: 353 YALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMD 412
Y+LR PQ+LGP ++ I K IE EINSV DNPLIDV + HGGNF G +G+ MD
Sbjct: 312 YSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGMGMD 371
Query: 413 NTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQ 472
+ R I + K + Q + L + ++NGLP +L G R ++ G KG +I S L
Sbjct: 372 HLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNMGLKGLQICGNSIMPLLT 431
Query: 473 FLANPVTNHVQS-AEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE 531
F N + + + AEQ NQ++NS G S+ +VDI + + L+ QA+DLR +
Sbjct: 432 FYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALMFGVQAVDLRTYK 491
Query: 532 ENLKHTVKNTVSQVAKKVLT 551
+ + + +S +++ +
Sbjct: 492 KTGHYDARACLSPATERLYS 511
>pdb|3CZO|A Chain A, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|B Chain B, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|C Chain C, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|D Chain D, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
Length = 539
Score = 249 bits (636), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 170/500 (34%), Positives = 257/500 (51%), Gaps = 24/500 (4%)
Query: 62 VNLGGETLTVAQVAAIATSSTNVELSESAR--EGVKASSDWVMESMNKGTDSYGVTTGFG 119
V +G + LT+ VA +A + T V L+ + +G++AS D++ ++ G YGVT+GFG
Sbjct: 2 VIIGNQKLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFG 61
Query: 120 ATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSG 177
++ A LQ L+ FL G + + LP + RAA L+R N+ +G SG
Sbjct: 62 GXANVAISREQASELQTNLVWFLKTG-------AGNKLPLADVRAAXLLRANSHXRGASG 114
Query: 178 IRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIID 237
IR E+++ LN +TP + G+I DLVPLSYI G L G S NG+ D
Sbjct: 115 IRLELIKRXEIFLNAGVTPYVYEFGSI--GXDLVPLSYITGSLIGLDPSFKVDFNGKEXD 172
Query: 238 AQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQ 297
A A +Q L PKEGLA NGT+V +G+A+ +++ L ++ + A+ + +
Sbjct: 173 APTALRQLNLSPLTLLPKEGLAXXNGTSVXTGIAANCVYDTQILTAIAXGVHALDIQALN 232
Query: 298 GKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK-----QDR 352
G + H K HPGQ+ AA +L S V E+D + QDR
Sbjct: 233 GTNQSFHPFIHNSKPHPGQLWAADQXISLLANSQLVR-----DELDGKHDYRDHELIQDR 287
Query: 353 YALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMD 412
Y+LR PQ+LGP ++ I K IE EINSV DNPLIDV + HGGNF G +G D
Sbjct: 288 YSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGXGXD 347
Query: 413 NTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQ 472
+ R I + K + Q + L + ++NGLP +L G R ++ G KG +I S L
Sbjct: 348 HLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNXGLKGLQICGNSIXPLLT 407
Query: 473 FLANPVTNHVQS-AEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE 531
F N + + + AEQ NQ++NS G S+ +VDI + + L QA+DLR +
Sbjct: 408 FYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALXFGVQAVDLRTYK 467
Query: 532 ENLKHTVKNTVSQVAKKVLT 551
+ + + ++S +++ +
Sbjct: 468 KTGHYDARASLSPATERLYS 487
>pdb|2O78|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O7E|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7F|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
Length = 521
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 147/480 (30%), Positives = 242/480 (50%), Gaps = 25/480 (5%)
Query: 59 KPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGF 118
KP V L + + Q A+A+ + L+ AR+ +AS + + + YG+TTGF
Sbjct: 8 KPAVELD-RHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGF 66
Query: 119 GATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYS 176
G ++R +N LQ L+ FL +G+ L + RA +L R+ ++ QG S
Sbjct: 67 GPLANRLISGENVRTLQANLVHFLASGV-------GPVLDWTTARAMVLARLVSIAQGAS 119
Query: 177 GIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEII 236
G + + LLN + P +P RGT+ DL PL+++ L GR + +G +
Sbjct: 120 GASEGTIARLIDLLNSELAPAVPSRGTV--GXDLTPLAHMVLCLQGRGDFLDR--DGTRL 175
Query: 237 DAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVM 296
D E ++ +L ++ LALVNGT+ +G+A + +L + L+A+ AE +
Sbjct: 176 DGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECL 235
Query: 297 QGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS----YVNAAKKLHEIDPLQKPK--Q 350
+G+ E L+ HPGQ +AAA + +DGS+ +V A ++L D +P+ Q
Sbjct: 236 RGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQ 295
Query: 351 DRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRN-KALHGGNFQGTPIGV 409
D Y+LR +PQ LG + + + + + E+N+V DNP+ + ALHGGNF G + +
Sbjct: 296 DAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVAL 355
Query: 410 SMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPS-LDYGFKGAEIAMASYC 468
+ D A+ + L Q + L ++ N GLP L R P+ L+ GF GA++ +
Sbjct: 356 TSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLH--RGPAGLNSGFMGAQVTATALL 413
Query: 469 SELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 528
+E++ P + H S NQDV SLG I++R E +D + + + L QA +LR
Sbjct: 414 AEMRA-TGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELR 472
>pdb|2O6Y|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O7B|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7D|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
Length = 521
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 146/480 (30%), Positives = 241/480 (50%), Gaps = 25/480 (5%)
Query: 59 KPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGF 118
KP V L + + Q A+A+ + L+ AR+ +AS + + + YG+TTGF
Sbjct: 8 KPAVELD-RHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGF 66
Query: 119 GATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYS 176
G ++R +N LQ L+ L +G+ L + RA +L R+ ++ QG S
Sbjct: 67 GPLANRLISGENVRTLQANLVHHLASGV-------GPVLDWTTARAMVLARLVSIAQGAS 119
Query: 177 GIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEII 236
G + + LLN + P +P RGT+ DL PL+++ L GR + +G +
Sbjct: 120 GASEGTIARLIDLLNSELAPAVPSRGTV--GXDLTPLAHMVLCLQGRGDFLDR--DGTRL 175
Query: 237 DAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVM 296
D E ++ +L ++ LALVNGT+ +G+A + +L + L+A+ AE +
Sbjct: 176 DGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECL 235
Query: 297 QGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS----YVNAAKKLHEIDPLQKPK--Q 350
+G+ E L+ HPGQ +AAA + +DGS+ +V A ++L D +P+ Q
Sbjct: 236 RGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQ 295
Query: 351 DRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRN-KALHGGNFQGTPIGV 409
D Y+LR +PQ LG + + + + + E+N+V DNP+ + ALHGGNF G + +
Sbjct: 296 DAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVAL 355
Query: 410 SMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPS-LDYGFKGAEIAMASYC 468
+ D A+ + L Q + L ++ N GLP L R P+ L+ GF GA++ +
Sbjct: 356 TSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLH--RGPAGLNSGFMGAQVTATALL 413
Query: 469 SELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 528
+E++ P + H S NQDV SLG I++R E +D + + + L QA +LR
Sbjct: 414 AEMRA-TGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELR 472
>pdb|3KDY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
pdb|3KDY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
Length = 537
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 163/529 (30%), Positives = 248/529 (46%), Gaps = 41/529 (7%)
Query: 62 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGAT 121
V++ GETLTV V +A V++ + + S + + YGVTTG+GA
Sbjct: 13 VSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGAM 72
Query: 122 SHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIR 179
+ + LQ L+R +AG+ RA + R+NTL +G+S +R
Sbjct: 73 IYMQVDKSKEVELQTNLVRSHSAGV-------GPLFAEDEARAIVAARLNTLAKGHSAVR 125
Query: 180 FEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQ 239
ILE + + LN ITP +P G++ DL PLS++A L G +G ++
Sbjct: 126 PIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---EGYVLRDGRPVETA 180
Query: 240 EASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGK 299
+ + G EL+ KEGLAL+NGT+ +GL S+V+ A A +EI++A+ E ++G
Sbjct: 181 QVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGS 240
Query: 300 PEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK--------- 349
H + + H GQI+ AA M ++ GS L LQK K
Sbjct: 241 TSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--ELQKDKEAGKDVQRS 298
Query: 350 ----QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGT 405
Q Y+LR PQ +G + + A + E+NS NDNPL + HG NF G
Sbjct: 299 EIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGANFHGQ 357
Query: 406 PIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMA 465
PI +MD +A+ +G L Q + ++N + GLP L G +P L GF GA+
Sbjct: 358 PIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQYPAT 416
Query: 466 SYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILKLMSSTFLVALCQA 524
+ +E + + T V S NQDV S+GLIS+R + + K+++ +L A QA
Sbjct: 417 ALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA-AQA 474
Query: 525 IDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAAD 573
+D+ + L K T V + V T+G R+ D+ AD
Sbjct: 475 VDISGRFDGLSPAAKATYEAVRRLVPTLGV------DRYMADDIELVAD 517
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
pdb|2QVE|B Chain B, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
Length = 526
Score = 192 bits (487), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 162/529 (30%), Positives = 247/529 (46%), Gaps = 41/529 (7%)
Query: 62 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGAT 121
V++ GETLTV V +A V++ + + S + + YGVTTG+G
Sbjct: 2 VSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEM 61
Query: 122 SHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIR 179
+ + LQ L+R +AG+ RA + R+NTL +G+S +R
Sbjct: 62 IYMQVDKSKEVELQTNLVRSHSAGV-------GPLFAEDEARAIVAARLNTLAKGHSAVR 114
Query: 180 FEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQ 239
ILE + + LN ITP +P G++ DL PLS++A L G +G ++
Sbjct: 115 PIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---EGYVLRDGRPVETA 169
Query: 240 EASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGK 299
+ + G EL+ KEGLAL+NGT+ +GL S+V+ A A +EI++A+ E ++G
Sbjct: 170 QVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGS 229
Query: 300 PEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK--------- 349
H + + H GQI+ AA M ++ GS L LQK K
Sbjct: 230 TSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--ELQKDKEAGKDVQRS 287
Query: 350 ----QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGT 405
Q Y+LR PQ +G + + A + E+NS NDNPL + HG NF G
Sbjct: 288 EIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGANFHGQ 346
Query: 406 PIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMA 465
PI +MD +A+ +G L Q + ++N + GLP L G +P L GF GA+
Sbjct: 347 PIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQYPAT 405
Query: 466 SYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILKLMSSTFLVALCQA 524
+ +E + + T V S NQDV S+GLIS+R + + K+++ +L A QA
Sbjct: 406 ALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA-AQA 463
Query: 525 IDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAAD 573
+D+ + L K T V + V T+G R+ D+ AD
Sbjct: 464 VDISGRFDGLSPAAKATYEAVRRLVPTLGV------DRYMADDIELVAD 506
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam
pdb|2RJR|B Chain B, Substrate Mimic Bound To Sgtam
pdb|2RJS|A Chain A, Sgtam Bound To Substrate Mimic
pdb|2RJS|B Chain B, Sgtam Bound To Substrate Mimic
Length = 537
Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 162/529 (30%), Positives = 247/529 (46%), Gaps = 41/529 (7%)
Query: 62 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGAT 121
V++ GETLTV V +A V++ + + S + + YGVTTG+G
Sbjct: 13 VSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEM 72
Query: 122 SHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIR 179
+ + LQ L+R +AG+ RA + R+NTL +G+S +R
Sbjct: 73 IYMQVDKSKEVELQTNLVRSHSAGV-------GPLFAEDEARAIVAARLNTLAKGHSAVR 125
Query: 180 FEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQ 239
ILE + + LN ITP +P G++ DL PLS++A L G +G ++
Sbjct: 126 PIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---EGYVLRDGRPVETA 180
Query: 240 EASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGK 299
+ + G EL+ KEGLAL+NGT+ +GL S+V+ A A +EI++A+ E ++G
Sbjct: 181 QVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGS 240
Query: 300 PEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK--------- 349
H + + H GQI+ AA M ++ GS L LQK K
Sbjct: 241 TSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--ELQKDKEAGKDVQRS 298
Query: 350 ----QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGT 405
Q Y+LR PQ +G + + A + E+NS NDNPL + HG NF G
Sbjct: 299 EIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGANFHGQ 357
Query: 406 PIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMA 465
PI +MD +A+ +G L Q + ++N + GLP L G +P L GF GA+
Sbjct: 358 PIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQYPAT 416
Query: 466 SYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILKLMSSTFLVALCQA 524
+ +E + + T V S NQDV S+GLIS+R + + K+++ +L A QA
Sbjct: 417 ALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA-AQA 474
Query: 525 IDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAAD 573
+D+ + L K T V + V T+G R+ D+ AD
Sbjct: 475 VDISGRFDGLSPAAKATYEAVRRLVPTLGV------DRYMADDIELVAD 517
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From
Pseudomonas Putida
Length = 509
Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 144/474 (30%), Positives = 240/474 (50%), Gaps = 24/474 (5%)
Query: 68 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK 127
TLT+AQ+ AI + ++L SA + AS V + + + +YG+ TGFG + R
Sbjct: 9 TLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIA 68
Query: 128 NGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEA 185
+ LQ+ L+ AGI L R M++++N+L +G+SGIR ++++A
Sbjct: 69 SHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDA 121
Query: 186 ITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQA 245
+ L+N + P +PL+G++ ASG L PL++++ +L G ++ G+ + A EA A
Sbjct: 122 LIALVNAEVYPHIPLKGSVGASGALAPLAHMSLVLLGEGKARY---KGQWLSATEALAVA 178
Query: 246 GFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDH 305
G L KEGLAL+NGT + A LF A +L + + E + G D
Sbjct: 179 GLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDA 238
Query: 306 LTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQ 365
H+ + GQI+ AA +L SS V+ + K D +Q P Y+LR PQ +G
Sbjct: 239 RIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NADKVQDP----YSLRCQPQVMGAC 292
Query: 366 IEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLM 425
+ +R A + + E N+V+DNPL+ + + GGNF P+ ++ DN LAIA IG L
Sbjct: 293 LTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALAIAEIGSLS 352
Query: 426 FAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSA 485
+ S L+ D + + LP L N ++ GF A++ A+ SE + L++P +
Sbjct: 353 ERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPT 409
Query: 486 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVK 539
+ +D S+ + ++ E + + + + + CQ +DLR + LK + K
Sbjct: 410 SANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR---KGLKTSAK 460
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
pdb|2OHY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
Length = 539
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 162/529 (30%), Positives = 247/529 (46%), Gaps = 41/529 (7%)
Query: 62 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGAT 121
V++ GETLTV V +A V++ + + S + + YGVTTG+G
Sbjct: 15 VSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEM 74
Query: 122 SHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIR 179
+ + LQ L+R +AG+ RA + R+NTL +G+S +R
Sbjct: 75 IYMQVDKSKEVELQTNLVRSHSAGV-------GPLFAEDEARAIVAARLNTLAKGHSAVR 127
Query: 180 FEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQ 239
ILE + + LN ITP +P G++ DL PLS++A L G +G ++
Sbjct: 128 PIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---EGYVLRDGRPVETA 182
Query: 240 EASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGK 299
+ + G EL+ KEGLAL+NGT+ +GL S+V+ A A +EI++A+ E ++G
Sbjct: 183 QVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGS 242
Query: 300 PEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK--------- 349
H + + H GQI+ AA M ++ GS L LQK K
Sbjct: 243 TSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--ELQKDKEAGKDVQRS 300
Query: 350 ----QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGT 405
Q Y+LR PQ +G + + A + E+NS NDNPL + HG NF G
Sbjct: 301 EIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGANFHGQ 359
Query: 406 PIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMA 465
PI +MD +A+ +G L Q + ++N + GLP L G +P L GF GA+
Sbjct: 360 PIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQYPAT 418
Query: 466 SYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILKLMSSTFLVALCQA 524
+ +E + + T V S NQDV S+GLIS+R + + K+++ +L A QA
Sbjct: 419 ALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA-AQA 476
Query: 525 IDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAAD 573
+D+ + L K T V + V T+G R+ D+ AD
Sbjct: 477 VDISGRFDGLSPAAKATYEAVRRLVPTLGV------DRYMADDIELVAD 519
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|B Chain B, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|C Chain C, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|D Chain D, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
Length = 509
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 144/474 (30%), Positives = 240/474 (50%), Gaps = 24/474 (5%)
Query: 68 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK 127
TLT+AQ+ AI + ++L SA + AS V + + + +YG+ TGFG + R
Sbjct: 9 TLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIA 68
Query: 128 NGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEA 185
+ LQ+ L+ AGI L R M++++N+L +G+SGIR ++++A
Sbjct: 69 SHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDA 121
Query: 186 ITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQA 245
+ L+N + P +PL+G++ ASGDL PL++++ +L G ++ G+ + A EA A
Sbjct: 122 LIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARY---KGQWLSATEALAVA 178
Query: 246 GFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDH 305
G L KEGLAL+NGT + A LF A +L + + E + G D
Sbjct: 179 GLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDA 238
Query: 306 LTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQ 365
H+ + GQI+ AA +L SS V+ + K D +Q P Y+LR PQ +G
Sbjct: 239 RIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NADKVQDP----YSLRCQPQVMGAC 292
Query: 366 IEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLM 425
+ +R A + + E N+V+DNPL+ + + GGN P+ ++ DN LAIA IG L
Sbjct: 293 LTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNGHAEPVAMAADNLALAIAEIGSLS 352
Query: 426 FAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSA 485
+ S L+ D + + LP L N ++ GF A++ A+ SE + L++P +
Sbjct: 353 ERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPT 409
Query: 486 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVK 539
+ +D S+ + ++ E + + + + + CQ +DLR + LK + K
Sbjct: 410 SANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR---KGLKTSAK 460
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
pdb|3KDZ|B Chain B, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
Length = 537
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 161/529 (30%), Positives = 247/529 (46%), Gaps = 41/529 (7%)
Query: 62 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGAT 121
V++ GETLTV V +A V++ + + S + + +GVTTG+G
Sbjct: 13 VSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIFGVTTGYGEM 72
Query: 122 SHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIR 179
+ + LQ L+R +AG+ RA + R+NTL +G+S +R
Sbjct: 73 IYMQVDKSKEVELQTNLVRSHSAGV-------GPLFAEDEARAIVAARLNTLAKGHSAVR 125
Query: 180 FEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQ 239
ILE + + LN ITP +P G++ DL PLS++A L G +G ++
Sbjct: 126 PIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---EGYVLRDGRPVETA 180
Query: 240 EASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGK 299
+ + G EL+ KEGLAL+NGT+ +GL S+V+ A A +EI++A+ E ++G
Sbjct: 181 QVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGS 240
Query: 300 PEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPK--------- 349
H + + H GQI+ AA M ++ GS L LQK K
Sbjct: 241 TSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--ELQKDKEAGKDVQRS 298
Query: 350 ----QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGT 405
Q Y+LR PQ +G + + A + E+NS NDNPL + HG NF G
Sbjct: 299 EIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGANFHGQ 357
Query: 406 PIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMA 465
PI +MD +A+ +G L Q + ++N + GLP L G +P L GF GA+
Sbjct: 358 PIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQYPAT 416
Query: 466 SYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILKLMSSTFLVALCQA 524
+ +E + + T V S NQDV S+GLIS+R + + K+++ +L A QA
Sbjct: 417 ALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA-AQA 474
Query: 525 IDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAAD 573
+D+ + L K T V + V T+G R+ D+ AD
Sbjct: 475 VDISGRFDGLSPAAKATYEAVRRLVPTLGV------DRYMADDIELVAD 517
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Inhibited With L-Cysteine
pdb|1B8F|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Length = 507
Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 142/474 (29%), Positives = 238/474 (50%), Gaps = 26/474 (5%)
Query: 68 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK 127
TLT+AQ+ AI + ++L SA + AS V + + + +YG+ TGFG + R
Sbjct: 9 TLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIA 68
Query: 128 NGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEA 185
+ LQ+ L+ AGI L R M++++N+L +G+SGIR ++++A
Sbjct: 69 SHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDA 121
Query: 186 ITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQA 245
+ L+N + P +PL+G++ DL PL++++ +L G ++ G+ + A EA A
Sbjct: 122 LIALVNAEVYPHIPLKGSV--GXDLAPLAHMSLVLLGEGKARY---KGQWLSATEALAVA 176
Query: 246 GFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDH 305
G L KEGLAL+NGT + A LF A +L + + E + G D
Sbjct: 177 GLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDA 236
Query: 306 LTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQ 365
H+ + GQI+ AA +L SS V+ + K D +Q P Y+LR PQ +G
Sbjct: 237 RIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NADKVQDP----YSLRCQPQVMGAC 290
Query: 366 IEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLM 425
+ +R A + + E N+V+DNPL+ + + GGNF P+ ++ DN LAIA IG L
Sbjct: 291 LTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALAIAEIGSLS 350
Query: 426 FAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSA 485
+ S L+ D + + LP L N ++ GF A++ A+ SE + L++P +
Sbjct: 351 ERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPT 407
Query: 486 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVK 539
+ +D S+ + ++ E + + + + + CQ +DLR + LK + K
Sbjct: 408 SANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR---KGLKTSAK 458
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From
Pseudomonas Putida
Length = 507
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 141/474 (29%), Positives = 238/474 (50%), Gaps = 26/474 (5%)
Query: 68 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK 127
TLT+AQ+ AI + ++L SA + AS V + + + +YG+ TGFG + R
Sbjct: 9 TLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIA 68
Query: 128 NGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEA 185
+ LQ+ L+ AGI L R M++++N+L +G+SGIR ++++A
Sbjct: 69 SHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDA 121
Query: 186 ITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQA 245
+ L+N + P +PL+G++ DL PL++++ +L G ++ G+ + A EA A
Sbjct: 122 LIALVNAEVYPHIPLKGSV--GXDLAPLAHMSLVLLGEGKARY---KGQWLSATEALAVA 176
Query: 246 GFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDH 305
G L KEGLAL+NGT + A LF A +L + + E + G D
Sbjct: 177 GLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDA 236
Query: 306 LTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQ 365
H+ + GQI+ AA +L SS V+ + K D +Q P ++LR PQ +G
Sbjct: 237 RIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NADKVQDP----FSLRCQPQVMGAC 290
Query: 366 IEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLM 425
+ +R A + + E N+V+DNPL+ + + GGNF P+ ++ DN LAIA IG L
Sbjct: 291 LTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALAIAEIGSLS 350
Query: 426 FAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSA 485
+ S L+ D + + LP L N ++ GF A++ A+ SE + L++P +
Sbjct: 351 ERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPT 407
Query: 486 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVK 539
+ +D S+ + ++ E + + + + + CQ +DLR + LK + K
Sbjct: 408 SANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR---KGLKTSAK 458
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
Length = 547
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 152/521 (29%), Positives = 248/521 (47%), Gaps = 53/521 (10%)
Query: 66 GETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDS-YGVTTGFGATSHR 124
G+ +++ ++A A V L + V S ++ESM YGV T G +
Sbjct: 32 GKDISLEEIARAARDHQPVTLHDEVVNRVTRSRS-ILESMVSDERVIYGVNTSMGGFVNY 90
Query: 125 RTKNGGA--LQKELIRFL--NAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRF 180
A LQ LI + N G + + T RA ML R+ +L +G S I
Sbjct: 91 IVPIAKASELQNNLINAVATNVGKYFDDT---------TVRATMLARIVSLSRGNSAISI 141
Query: 181 EILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQE 240
+ + ++ N I PC+P +G++ DL PL+ IA + TG+ ++ GE +
Sbjct: 142 VNFKKLIEIYNQGIVPCIPEKGSL--GXDLGPLAAIALVCTGQWKARY---QGEQMSGAM 196
Query: 241 ASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP 300
A ++AG EL KEGLAL+NGT+ GL ++ E L ++++ E + GK
Sbjct: 197 ALEKAGISPMELSFKEGLALINGTSAMVGLGVLLYDEVKRLFDTYLTVTSLSIEGLHGKT 256
Query: 301 EFTDHLTHKLKHHPGQIEAAA-IMEHILDGSSYVNA--AKKL--HEIDPLQKPK----QD 351
+ + H++K H GQ+E A I E + D S VN +KL E+D L K +D
Sbjct: 257 KPFEPAVHRMKPHQGQLEVATTIWETLADSSLAVNEHEVEKLIAEEMDGLVKASNHQIED 316
Query: 352 RYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSM 411
Y++R +PQ LGP + ++ +++ E+NS NDNPLID + + H G+F G + ++M
Sbjct: 317 AYSIRCTPQILGPVADTLKNIKQTLTNELNSSNDNPLIDQTTEEVFHNGHFHGQYVSMAM 376
Query: 412 DNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSEL 471
D+ +A+ + L + ++ +NGLP L N L G G + AS +E
Sbjct: 377 DHLNIALVTMMNLANRRIDRFMDKSNSNGLPPFLC-AENAGLRLGLMGGQFMTASITAES 435
Query: 472 QFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR--- 528
+ P++ S QD+ S GL+++R+ E + LK + S L+ CQA+D+R
Sbjct: 436 RASCMPMSIQSLSTTGDFQDIVSFGLVAARRVREQLKNLKYVFSFELLCACQAVDIRGTA 495
Query: 529 ------------------HLEENLKHTVKNTVSQVAKKVLT 551
+LEE+ T+ + + +A+ VLT
Sbjct: 496 GLSKRTRALYDKTRTLVPYLEED--KTISDYIESIAQTVLT 534
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From
Pseudomonas Putida
Length = 507
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/474 (29%), Positives = 237/474 (50%), Gaps = 26/474 (5%)
Query: 68 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK 127
TLT+AQ+ AI + ++L SA + AS V + + + +YG+ TGFG + R
Sbjct: 9 TLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIA 68
Query: 128 NGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEA 185
+ LQ+ L+ AGI L R M++++N+L +G+SGIR ++++A
Sbjct: 69 SHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDA 121
Query: 186 ITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQA 245
+ L+N + P +PL+G++ DL PL++++ +L G ++ G+ + A EA A
Sbjct: 122 LIALVNAEVYPHIPLKGSV--GXDLAPLAHMSLVLLGEGKARY---KGQWLSATEALAVA 176
Query: 246 GFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDH 305
G L KEGLAL+NGT + A LF A +L + + E + G D
Sbjct: 177 GLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDA 236
Query: 306 LTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQ 365
H+ + GQI+ AA +L SS V+ + K D +Q P Y+LR PQ +G
Sbjct: 237 RIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NADKVQDP----YSLRCQPQVMGAC 290
Query: 366 IEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLM 425
+ +R A + + E N+V+DNPL+ + + GGN P+ ++ DN LAIA IG L
Sbjct: 291 LTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNAHAEPVAMAADNLALAIAEIGSLS 350
Query: 426 FAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSA 485
+ S L+ D + + LP L N ++ GF A++ A+ SE + L++P +
Sbjct: 351 ERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPT 407
Query: 486 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVK 539
+ +D S+ + ++ E + + + + + CQ +DLR + LK + K
Sbjct: 408 SANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR---KGLKTSAK 458
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 38 MAETLKGSHLEEVKRMVAEYRKPVVNLGGETL 69
M + + SHLE++ R+++E +KPV+ +GG L
Sbjct: 195 MPKPPEDSHLEQIVRLISESKKPVLYVGGGCL 226
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 38 MAETLKGSHLEEVKRMVAEYRKPVVNLGGETL 69
M + + SHLE++ R+++E +KPV+ +GG L
Sbjct: 194 MPKPPEDSHLEQIVRLISESKKPVLYVGGGCL 225
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 590 PLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQ-----TVE 644
P +++ ++ L E E N +I A F +LK++ KE+++ + T+
Sbjct: 290 PHLREAQKTLAEEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLS 349
Query: 645 NGSPTIPNRIKECRSYPLYRLVREEL--GSNFLTGEK------VTSPGEEFDKVFTAMCQ 696
N + I + E P R RE++ G+ ++ GE+ +P ++ D FT + +
Sbjct: 350 NDTTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRR 409
Query: 697 GK 698
GK
Sbjct: 410 GK 411
>pdb|2V1Y|A Chain A, Structure Of A Phosphoinositide 3-Kinase Alpha Adaptor-
Binding Domain (Abd) In A Complex With The Ish2 Domain
From P85 Alpha
Length = 108
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 655 KECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 707
KE R YPL++L+++E F++ + E FD+ +C ++ P L+ +
Sbjct: 51 KEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDET-RRLCDLRLFQPFLKVI 102
>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
Length = 1091
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 654 IKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 707
KE R YPL++L+++E F++ + E FD+ +C ++ P L+ +
Sbjct: 73 FKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDET-RRLCDLRLFQPFLKVI 125
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 1096
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 654 IKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 707
KE R YPL++L+++E F++ + E FD+ +C ++ P L+ +
Sbjct: 78 FKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDET-RRLCDLRLFQPFLKVI 130
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 654 IKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 707
KE R YPL++L+++E F++ + E FD+ +C ++ P L+ +
Sbjct: 78 FKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDET-RRLCDLRLFQPFLKVI 130
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 654 IKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 707
+E R YPL++L+++E F++ + E FD+ +C ++ P L+ +
Sbjct: 78 FREARKYPLHQLLQDETSYIFVSVTQEAEREEFFDET-RRLCDLRLFQPFLKVI 130
>pdb|2GFP|A Chain A, Structure Of The Multidrug Transporter Emrd From
Escherichia Coli
pdb|2GFP|B Chain B, Structure Of The Multidrug Transporter Emrd From
Escherichia Coli
Length = 375
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 58 RKPVVNLGGETLTVAQVAAIATSSTNVELSESARE 92
R+PV+ +G +A + A+ TSS V ++ SA +
Sbjct: 64 RRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQ 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,927,594
Number of Sequences: 62578
Number of extensions: 875372
Number of successful extensions: 1986
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1846
Number of HSP's gapped (non-prelim): 38
length of query: 718
length of database: 14,973,337
effective HSP length: 106
effective length of query: 612
effective length of database: 8,340,069
effective search space: 5104122228
effective search space used: 5104122228
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)