Query 005031
Match_columns 718
No_of_seqs 318 out of 1093
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 16:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02457 phenylalanine ammonia 100.0 1E-210 2E-215 1775.4 73.1 695 17-718 7-706 (706)
2 KOG0222 Phenylalanine and hist 100.0 5E-205 1E-209 1625.6 55.5 681 30-718 34-715 (715)
3 TIGR01226 phe_am_lyase phenyla 100.0 1E-198 3E-203 1673.1 68.5 677 31-708 1-680 (680)
4 COG2986 HutH Histidine ammonia 100.0 3E-146 6E-151 1187.0 50.0 488 60-575 2-491 (498)
5 TIGR01225 hutH histidine ammon 100.0 7E-143 1E-147 1195.5 51.8 487 62-575 1-489 (506)
6 TIGR03832 Tyr_2_3_mutase tyros 100.0 2E-141 4E-146 1185.5 52.2 491 64-573 1-505 (507)
7 PRK09367 histidine ammonia-lya 100.0 2E-140 5E-145 1176.1 52.5 488 60-575 2-491 (500)
8 PF00221 Lyase_aromatic: Aroma 100.0 8E-137 2E-141 1143.6 44.3 470 62-553 1-472 (473)
9 cd00332 PAL-HAL Phenylalanine 100.0 3E-135 6E-140 1122.2 48.3 442 67-528 1-444 (444)
10 cd01594 Lyase_I_like Lyase cla 99.8 2.7E-19 5.8E-24 181.6 11.3 225 160-513 1-230 (231)
11 PLN02972 Histidyl-tRNA synthet 95.1 0.06 1.3E-06 64.8 8.2 186 279-527 39-229 (763)
12 COG5613 Uncharacterized conser 35.5 67 0.0015 36.0 5.5 55 109-166 10-68 (400)
13 TIGR01226 phe_am_lyase phenyla 27.8 1E+03 0.022 29.3 14.0 55 593-647 562-616 (680)
14 COG0061 nadF NAD kinase [Coenz 27.0 41 0.00088 36.3 2.2 33 106-141 77-110 (281)
15 PF14848 HU-DNA_bdg: DNA-bindi 23.0 1.7E+02 0.0036 27.8 5.2 56 62-122 22-79 (124)
16 PRK01033 imidazole glycerol ph 21.3 8.7E+02 0.019 25.7 10.8 147 41-220 57-215 (258)
No 1
>PLN02457 phenylalanine ammonia-lyase
Probab=100.00 E-value=1e-210 Score=1775.36 Aligned_cols=695 Identities=86% Similarity=1.273 Sum_probs=675.0
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHhhcCcHHHHHHHHhhcCCCeEEEcCCCcCHHHHHHHHcC---CCceeeCHHHHHH
Q 005031 17 EGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS---STNVELSESAREG 93 (718)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~i~l~G~~Lti~~v~avA~~---~~~v~Ls~~a~~r 93 (718)
+.+|+.. .|||||++||++|+|||+||||+|+++|++..|+|||.+||++||++||++ +++|++++++++|
T Consensus 7 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~Lti~~V~aVA~~~~~~~~V~ls~~a~~r 80 (706)
T PLN02457 7 EGFCIGG------ADPLNWGKAAEALKGSHLDEVKRMVAEYRKPVVKLEGETLTIAQVAAVARRGAGGVRVELSESARAR 80 (706)
T ss_pred cccccCC------CCCCcHHHHHHHhcCCcHHHHHHHHHHhcCceEEECCCCCCHHHHHHHHhcCCCCCeeeeCHHHHHH
Confidence 5689852 599999999999999999999999999999999999999999999999987 4889999999999
Q ss_pred HHHHHHHHHHHHhcCCcccccccCCCCCCcccccchhhhHHHHHHHhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcC
Q 005031 94 VKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQ 173 (718)
Q Consensus 94 i~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~ 173 (718)
|++|+++|++.+++|++|||||||||+++|+++++..+||+||||+|+||+++.+. .|++||+++|||+|++|+|+|++
T Consensus 81 i~~S~~~l~~~~~~g~~iYGVtTGfG~~~d~ri~~~~~LQ~nLirshaaGvg~~~~-~g~~lp~~~VRAaMliRlNsL~~ 159 (706)
T PLN02457 81 VKASSDWVMESMMKGTDSYGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGTGE-SGHTLPASATRAAMLVRINTLLQ 159 (706)
T ss_pred HHHHHHHHHHHHhcCCeeeeecCCCCCccCCchhHHHHHHHHHHHHHhcCcCCCCC-CCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999986543 47999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHHhccCCCccccCCCCeeecHHHHHHHCCCCC--cc
Q 005031 174 GYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGF--FE 251 (718)
Q Consensus 174 G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P--~~ 251 (718)
||||||||++|+|++|||+||+|+||++|||||||||+||||||++|+|+|+++++.++|+++++.|||+++||+| ++
T Consensus 160 G~SGVr~evle~L~~lLN~~i~PvVP~~GSVGASGDL~PLAhIAl~L~Geg~~~~v~~~G~~~~a~eAL~~aGl~Pp~~~ 239 (706)
T PLN02457 160 GYSGIRFEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVTPDGEKVTAAEAFKLAGIEGGFFE 239 (706)
T ss_pred CCCCCCHHHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeeccCCEEEcHHHHHHHcCCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999887778999999999999999997 99
Q ss_pred CCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhhhhcCCCchHHHHHHHHHHHhcCCc
Q 005031 252 LQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS 331 (718)
Q Consensus 252 L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~ 331 (718)
|+|||||||||||++|+|+|+++++||++|+.++++++||++|+|+|++++|||++|++||||||+++|++||++|+||+
T Consensus 240 L~~KEGLALiNGTa~~~a~aalal~da~~L~~~a~v~~Als~Eal~G~~~~fdp~ih~~RpHpGQ~e~Aa~ir~lL~GS~ 319 (706)
T PLN02457 240 LQPKEGLALVNGTAVGSALASTVLFDANVLAVLAEVLSAVFCEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS 319 (706)
T ss_pred CCCCcchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhcCHHHHhcCCChhHHHHHHHHHHHhCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhccCCCcccccCCCccccCCCCCCchhhhHH
Q 005031 332 YVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSM 411 (718)
Q Consensus 332 ~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~am 411 (718)
+++...+.|..+|.++++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|||||||+||+++|
T Consensus 320 l~~~~~~~~~~~~~~~~vQD~YSLRc~PQvlGp~~d~l~~a~~~ie~ElNS~tDNPLId~~~~~vl~GGNF~g~~va~am 399 (706)
T PLN02457 320 YMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVARDKALHGGNFQGTPIGVSM 399 (706)
T ss_pred cchhhhhccccccccCcCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCceeCCCCceeeCCCCCchHHHHHH
Confidence 98776656666766789999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhccCCCcccccCccccchh
Q 005031 412 DNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQD 491 (718)
Q Consensus 412 D~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqD 491 (718)
|++++||+++|+++|||+++|+||.+|+|||+||+++++||++||||++||+||||+|||++||||+|+|++|+++||||
T Consensus 400 D~l~lAla~lg~ls~rr~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~~~q~taAAl~sEl~~LA~PvS~~~~pt~~~nED 479 (706)
T PLN02457 400 DNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQD 479 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCCCHhhcCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCcccccCCccc
Confidence 99999999999999999999999999999999999767999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHH
Q 005031 492 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKA 571 (718)
Q Consensus 492 v~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~ 571 (718)
|||||++||||+.+++|++++|+||||+++|||+|||+++++|++.++++++++|+++++++.++++++.||+++|+.++
T Consensus 480 ~~Smg~~sArkt~e~ve~l~~~lAieLl~a~QAlDLR~~~~~l~~~~~~~~~~vr~~v~~~~~~~~~~~~~~~~~~l~~~ 559 (706)
T PLN02457 480 VNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSAVKNTVSQVAKKTLTTGANGELHPSRFCEKDLLKV 559 (706)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHccccCCCccccccccCHHHHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HhhcchhhhccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCC
Q 005031 572 ADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIP 651 (718)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~l~~~l~~vl~d~~l~~~~~~~~~~~~~~~~I~~f~~~l~~~l~~~~~~~R~~f~~g~~~~~ 651 (718)
++++++|+|+||||+.+|++|+|++++||+|++++++++++..+++|++|..|+++++++|+++|+++|++|++|+.++|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~~~l~~~~~~~r~~~~~~~~~~~ 639 (706)
T PLN02457 560 VDREPVFSYIDDPCSATYPLMQKLRQVLVEHALANGEAEKNASTSVFRKIGAFEEELKAALPKEVEAAREAYENGTAPIP 639 (706)
T ss_pred HhhcceecccCCCcccchhHHHHHHHHHHHHHhhCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999998877788888999999999999999999999999999999998899
Q ss_pred CcccccccchhhHHhhhhcCcccccCccccCCCchhHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 005031 652 NRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 718 (718)
Q Consensus 652 ~~ilg~~S~~LY~FVR~eLGv~~h~Ge~~~t~G~~is~i~~ai~~g~~~~~l~~cl~~~~~~~~~~~ 718 (718)
|+|++|||||||+|||+|||||||+|++++|||+||||||+|||+|+++||||+||++|+|+|+|||
T Consensus 640 ~ri~~~~s~~lY~fVR~~L~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~~~~~~~~~~~ 706 (706)
T PLN02457 640 NRIKECRSYPLYRFVREELGTELLTGEKTRSPGEEFDKVFDAICQGKLIDPLLECLKEWNGAPLPIC 706 (706)
T ss_pred chhhcCcchHHHHHHHHHcCCccccCCCCCCCCccHHHHHHHHHCCccHHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-205 Score=1625.61 Aligned_cols=681 Identities=79% Similarity=1.158 Sum_probs=669.6
Q ss_pred CCCCCHHHHHHHhhcCcHHHHHHHHhhcCCCeEEEcCCCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCC
Q 005031 30 GDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGT 109 (718)
Q Consensus 30 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~i~l~G~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~ 109 (718)
.||+||..+|++|+|+|+|||++|+++||++.|.|||.+||++||+++++.+++|+|+++++++|++|++||++.+++|+
T Consensus 34 lDp~n~~~~a~amk~s~ldEvkkm~~~yRkk~v~L~GetLt~~qva~~~kg~~~veLs~ea~~~V~as~~~v~e~mne~t 113 (715)
T KOG0222|consen 34 LDPLNWNAAALAMKGSHLDEVKKMVKEYRKKVVNLGGETLTIGQVAAVAKGGVKVELSEEARAGVKASSDWVMESMNEGT 113 (715)
T ss_pred CChhhhHHHHHHhchhhhHHHHHHHHHHhhhheeeCCccccHHHHHHhccCceeEEeCHHHHhhhhhhHHHHHHHHhcCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCcccccchhhhHHHHHHHhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHH
Q 005031 110 DSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKL 189 (718)
Q Consensus 110 ~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~l 189 (718)
.+||||||||+..++++.+...||+.+||++++|++|.|.+..+.+|.+.+|++|++|+|+|++||||||+|++++++.|
T Consensus 114 ~vYGvTTGFG~t~~r~t~~~~aLqk~~i~ll~a~~~g~g~~~s~~~P~~rtR~~m~lRIN~L~qGySGI~~E~leai~~~ 193 (715)
T KOG0222|consen 114 DVYGVTTGFGATSHRRTIPGEALQKELIRLLNAGIFGYGKDTSPTLPNPRTRAAMLLRINTLLQGYSGIRFEILEAITSL 193 (715)
T ss_pred ceeeeeccccccccccccCHHHHHHHHHHHHHhcCcccCCCCCCCCCcHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999988766779999999999999999999999999999999999999
Q ss_pred HhCCCccccCCCCCCCCccCchhHHHHHHHhccCCCccccCCCCeeecHHHHHHHCCCCC-ccCCCccchhccccchHHH
Q 005031 190 LNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGF-FELQPKEGLALVNGTAVGS 268 (718)
Q Consensus 190 LN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P-~~L~pKEGLALiNGTa~s~ 268 (718)
||+.|+|.||+||+|||||||+||||||+.|+|+|+.++|.+.|++.+|.+||+.+|++| |+|+|||||||||||++.+
T Consensus 194 ~N~~~~p~lP~rGTi~aSGDL~PLs~iA~~L~G~pn~K~~~P~~~~~~A~~a~k~~gls~f~eL~PKEGLALvNGTav~s 273 (715)
T KOG0222|consen 194 LNANITPYLPLRGTITASGDLVPLSYIAGGLTGRPNSKMWGPSGEWLTAKEAFKLAGLSPFFELQPKEGLALVNGTAVGS 273 (715)
T ss_pred HhcCcccccCcCcccccCCCcccHHHHhhhhcCCCCCcccCCCCCcccHHHHHHHcCCCcceecccccceeeeccchHhh
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhhhhcCCCchHHHHHHHHHHHhcCCccchhhhhhcccCCCCCC
Q 005031 269 GLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKP 348 (718)
Q Consensus 269 a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~ 348 (718)
|+||.++++|+.|+++|++++||+.|+|.|++++||+.+|++||||||||+|++||++|+||.+.+...+.|+.||++++
T Consensus 274 ~L~s~vl~~An~ia~~aev~sAl~~eVmkGk~e~~D~~~Hrlk~H~GQieaA~~m~~iLd~ss~~ke~ae~Hr~dpl~k~ 353 (715)
T KOG0222|consen 274 GLASTVLERANIIAVQAEVLSALFAEVMKGKPEFTDHLTHRLKHHPGQIEAAARMEHILDGSSYPKEAAESHRMDPLQKP 353 (715)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchhhccCCCcHHHHHHHHHHHhcccccHHHHHHHhccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccchhhhhhHHHHHHHHHHHHHHHHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 005031 349 KQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQ 428 (718)
Q Consensus 349 ~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q 428 (718)
+||+|.|||+||||||++|+|+++++.|++||||+|||||||+++++++|||||||+|++.|||++|+|+++||+|||+|
T Consensus 354 ~QD~YaLR~~PQ~~G~~~evI~fatkiIe~EiNSvnDNPli~vsR~kai~GGNFqGt~~~~AmD~~~laiaei~kl~~~q 433 (715)
T KOG0222|consen 354 KQDRYALRTSPQWLGPQIEVIRFATKIIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVAMDNLRLAIAEIGKLMFAQ 433 (715)
T ss_pred hhhhhhhhcCchhhchHHHHHHHHHHHHHHHhhccCCCcceecccccccccCccCCCcchhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHH
Q 005031 429 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVD 508 (718)
Q Consensus 429 ~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave 508 (718)
+++|+|++||||||+||+++++||+|||||++|++||||||||++||||+|+|++|+++|||||||||++|+||+.++||
T Consensus 434 ~e~LvN~~~nngLPs~Lt~~rn~~Ld~Gf~~ae~a~As~~SE~q~L~~P~t~~~~sas~~nqD~~SlG~~ssRKt~~aVe 513 (715)
T KOG0222|consen 434 FEELVNDFYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTVHVQSASQHNQDVNSLGLISSRKTLEAVE 513 (715)
T ss_pred HHHHhhhhhhcCCCccccCCCCCCcccchhHHHHHHHHHHhhhhhhcCCccccccchhhhcccchhhcchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHhhcchhhhccCCCCCc
Q 005031 509 ILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSAT 588 (718)
Q Consensus 509 ~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~~~~~~~~~~~~~~~~ 588 (718)
++++|+++||+++|||+|||++++..+.++...+.++.+.|++ ++++|||+++||.++++++++|+|.||||+.+
T Consensus 514 ~lk~m~t~~LvA~CQ~id~rhLe~ll~ta~~~kV~qlaksVl~-----~l~~dRf~~~di~avv~re~v~~~ed~~~s~t 588 (715)
T KOG0222|consen 514 ILKLMSTTELVAACQAIDLRHLEELLKTAVLEKVSQLAKSVLT-----PLHPDRFMEPDILAVVDREYVFSYEDDPWSAT 588 (715)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhHHHhhhhHHHHHHHHHHhcc-----ccCcccccchhHHHHhhhhheeeecCChHHHh
Confidence 9999999999999999999999999999999999999999885 48899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCCcccccccchhhHHhhh
Q 005031 589 YPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVRE 668 (718)
Q Consensus 589 ~~l~~~l~~vl~d~~l~~~~~~~~~~~~~~~~I~~f~~~l~~~l~~~~~~~R~~f~~g~~~~~~~ilg~~S~~LY~FVR~ 668 (718)
||+|||+|.++++|++..++.+++ ++|.||..|+.+++..+|++++..|.+|++|..+++|||++|||||||+|||+
T Consensus 589 ~P~~qklr~~~~~~a~a~~e~e~~---~~f~ki~af~~e~k~~lPke~e~~r~ey~~gt~~~~nrik~crsyplyrfvr~ 665 (715)
T KOG0222|consen 589 YPLMQKLRHVLVDHALALPETEKN---SVFHKIGAFEAELKALLPKEVERVRAEYENGTSAIANRIKECRSYPLYRFVRE 665 (715)
T ss_pred hHHHHHHHHHhccccccCCccccc---hhhhccchhHHHHhhcCchhHHHHHHHhccCcchhhhHHHHhhcCcHHHHHHH
Confidence 999999999999999887765543 79999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccCccccCCCchhHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 005031 669 ELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 718 (718)
Q Consensus 669 eLGv~~h~Ge~~~t~G~~is~i~~ai~~g~~~~~l~~cl~~~~~~~~~~~ 718 (718)
|||+.+++||+.+|||++++|||.||++||++||+||||++|||+|+|||
T Consensus 666 el~t~lltge~v~spge~fdkvf~ai~~gk~idp~~ecl~ewngap~~ic 715 (715)
T KOG0222|consen 666 ELGTELLTGEKVRSPGEEFDKVFTAISEGKLIDPLMECLKEWNGAPISIC 715 (715)
T ss_pred HhcceeccCCccCCchHHHHHHHHHHhcCccccHHHHHHHHcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999
No 3
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=100.00 E-value=1.5e-198 Score=1673.12 Aligned_cols=677 Identities=79% Similarity=1.179 Sum_probs=655.1
Q ss_pred CCCCHHHHHHHhhcCcHHHHHHHHhhcC-CCeEEEcCCCcCHHHHHHHHcCCCceeeCHHHH-HHHHHHHHHHHHHHhcC
Q 005031 31 DALNWGVMAETLKGSHLEEVKRMVAEYR-KPVVNLGGETLTVAQVAAIATSSTNVELSESAR-EGVKASSDWVMESMNKG 108 (718)
Q Consensus 31 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~i~l~G~~Lti~~v~avA~~~~~v~Ls~~a~-~ri~~s~~~l~~~~~~g 108 (718)
||+||++||++|+|||+|+|+||+++|+ ++.|+|||.+||++||++||+++++|+|+++++ +||++|++||++.+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~Lti~~v~aVA~~~~~V~Ls~~a~~~rv~~S~~~l~~~i~~g 80 (680)
T TIGR01226 1 DPLNWGTAAKTMAGSQLDEVKRMVAEYRNGPLIKLDGATLTISQVAAAARRGVAVELDESARVERVKASSEWVMTQMSKG 80 (680)
T ss_pred CCccHHHHHHHhccChHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHhCCCCeeECHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999998 678999999999999999999899999999999 99999999999999999
Q ss_pred CcccccccCCCCCCcccccchhhhHHHHHHHhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHH
Q 005031 109 TDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITK 188 (718)
Q Consensus 109 ~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~ 188 (718)
++|||||||||+++|+++++..+||+||||+|+||+++.+...+++||+++|||+|++|+|+|++|||||||+++|+|.+
T Consensus 81 ~~IYGVnTGfG~~~d~r~~~~~~lQ~~Lir~h~aGvg~~~~~~~~~lp~~~vRAaMlvRlNsL~~G~SGVr~evle~l~~ 160 (680)
T TIGR01226 81 TDVYGVTTGFGGTSHRRTKQGGALQKELLRFLNAGILGTGSDNHNSLPEEATRAAMLVRINTLLQGYSGIRFEILEAITK 160 (680)
T ss_pred CeeeeecCCCCCccCccchHHHHHHHHHHHHHhcCCCCCCCcCCCcCCHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999986544333599999999999999999999999999999999999
Q ss_pred HHhCCCccccCCCCCCCCccCchhHHHHHHHhccCCCccccCCCCeeecHHHHHHHCCCCC-ccCCCccchhccccchHH
Q 005031 189 LLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGF-FELQPKEGLALVNGTAVG 267 (718)
Q Consensus 189 lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P-~~L~pKEGLALiNGTa~s 267 (718)
|||+||+|+||++|||||||||+||||||++|+|+|+++++.++|+++++.|||+++||+| ++|+|||||||||||++|
T Consensus 161 lLN~~i~P~VP~rGSIGASGDL~PLShIa~aL~Geg~v~~~~~~G~~~~a~eAL~~aGl~p~~~L~pKEGLALvNGTa~~ 240 (680)
T TIGR01226 161 LLNANVTPCLPLRGTITASGDLVPLSYIAGLITGRPNSKVYSPDGQIMSAAEALKLAGIEGGFELQPKEGLAIVNGTAVG 240 (680)
T ss_pred HHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeecCCCeEEeHHHHHHHcCCCCCCCCCCccchhhhcchHHH
Confidence 9999999999999999999999999999999999999887766899999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhhhhcCCCchHHHHHHHHHHHhcCCccchhhhhhcccCCCCC
Q 005031 268 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQK 347 (718)
Q Consensus 268 ~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~ 347 (718)
+|+|+++++||++|+.++++++||++|+|+|++++|++.+|++||||||+++|++||++|+||++++...+.++.++.++
T Consensus 241 ~a~aalal~~a~~L~~~a~v~~Al~~Eal~G~~~~~~~~~~~~RpHpGQ~e~Aa~ir~lL~GS~l~~~~~~~~~~~~~~~ 320 (680)
T TIGR01226 241 ASMASLVLFEANILALLAEVLSAMFCEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYAKHAEKEVEMDPLQK 320 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcCChHHHHHcCCCCcHHHHHHHHHHHhCCChhhhhhhhccccCccCC
Confidence 99999999999999999999999999999999996666788999999999999999999999999988766677677778
Q ss_pred CCCccccccchhhhhhHHHHHHHHHHHHHHHHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 005031 348 PKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFA 427 (718)
Q Consensus 348 ~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~ 427 (718)
++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|||||||+||++|||++++||++||+++|+
T Consensus 321 ~vQD~YSlRc~PQvlGp~~e~l~~a~~~ie~ElNS~tDNPLI~~~~~~vlhgGNF~g~~ia~amD~l~lAla~lg~ls~~ 400 (680)
T TIGR01226 321 PKQDRYALRTSPQWLGPQIEVIRSATKMIEREINSVNDNPLIDVERGKAHHGGNFQGTPIGVSMDNTRLAIAAIGKLMFA 400 (680)
T ss_pred cCCCcccchhhhhhhHHHHHHHHHHHHHHHHHHccCCCCCceeCCCCceeeCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHH
Q 005031 428 QFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV 507 (718)
Q Consensus 428 q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~av 507 (718)
|+++|+||.+|+|||+||+++++||++||||++||+||||++||++||||+|+|++|+++|||||||||++||||+.+++
T Consensus 401 r~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~g~q~~~aal~sEl~~LA~PvS~~~~~a~~~nEDv~Smg~~sArk~~~~v 480 (680)
T TIGR01226 401 QFSELVNDFYNNGLPSNLAGGRNPSLDYGFKGAEIAMASYTSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAV 480 (680)
T ss_pred HHHHhcCccccCCCCHhhCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCccccccCcccccccHHHHHHHHHHHH
Confidence 99999999999999999997679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHhhcchhhhccCCCCC
Q 005031 508 DILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSA 587 (718)
Q Consensus 508 e~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~~~~~~~~~~~~~~~ 587 (718)
|++++|+|+||+++|||+|||+++++|.+.+++.+.++.++++..+.++++++.||+++++.++++++++|+|.||+|+.
T Consensus 481 e~l~~m~A~eLl~a~QAlDLR~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 560 (680)
T TIGR01226 481 DILKLMLATYLYALCQAVDLRHLEENFKSTVKNIVSEVAKKVLGMGLTGELHPKRFCEKDLLKVLDRETVFDYIDDPCSA 560 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHhcccCCCChhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCCcccccccchhhHHhh
Q 005031 588 TYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVR 667 (718)
Q Consensus 588 ~~~l~~~l~~vl~d~~l~~~~~~~~~~~~~~~~I~~f~~~l~~~l~~~~~~~R~~f~~g~~~~~~~ilg~~S~~LY~FVR 667 (718)
+|++|++|+++|++|+|++++.+++ ..++|++|+.|+++++..+++++++.|.+|.+|..++||||.+|||||||+|||
T Consensus 561 ~~~~~~~l~~~l~~~~l~~~~~~~~-~~s~~~~~~~~~~~~~~~l~~e~~~~~~~~~~g~~~~~~~i~~c~s~~lY~fVR 639 (680)
T TIGR01226 561 NYPLMQKLRQVLVEHALSNGEREKD-LLSSFQKIQVFEAELKAVLPPDVRGARAAGDSGTSPAPNRIGECRSYPLYRFVR 639 (680)
T ss_pred hHHHHHHHHHHHHHHhhcCCccccc-hhHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCchhhHHHhccCCcHHHHHHH
Confidence 9999999999999999998877665 678999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccCccccCCCchhHHHHHHHhcCcchhhHHHhhh
Q 005031 668 EELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLR 708 (718)
Q Consensus 668 ~eLGv~~h~Ge~~~t~G~~is~i~~ai~~g~~~~~l~~cl~ 708 (718)
+|||||||+|++.+|||+||||||+|||+|+++||||+||+
T Consensus 640 ~~l~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~ 680 (680)
T TIGR01226 640 EELGTKYLTGEKYNSPGEEISKVYEAISEGKIIDPLLKCLD 680 (680)
T ss_pred HHcCCccccCCcCCCCCccHHHHHHHHHCCcchHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 4
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-146 Score=1187.05 Aligned_cols=488 Identities=34% Similarity=0.494 Sum_probs=472.9
Q ss_pred CeEEEcCCCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccc--cchhhhHHHHH
Q 005031 60 PVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELI 137 (718)
Q Consensus 60 ~~i~l~G~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Li 137 (718)
..|+|||.+||++||++|++++.+|+||+++++||++|++.|++.+++|++|||||||||+++++++ ++.++||+|||
T Consensus 2 ~~i~l~~~~lt~~dv~~Var~g~~v~l~~~a~~rI~~sra~v~~iv~~g~~vYGInTGfG~l~~v~I~~~d~~~Lqrnli 81 (498)
T COG2986 2 MTIILDPGSLTLEDLAAIAREGAPVRLDPAAWARIEKARARVAEIVAGGAPVYGINTGFGKLADVRIAAADLATLQRNLI 81 (498)
T ss_pred ceEEeCCCCCCHHHHHHHHhcCCceeeCHHHHHHHHHHHHHHHHHHhCCCeeeeeccccccccccccCHHHHHHHHHhhH
Confidence 4689999999999999999999999999999999999999999999999999999999999999987 47899999999
Q ss_pred HHhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHH
Q 005031 138 RFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIA 217 (718)
Q Consensus 138 r~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia 217 (718)
++|+|||| ++||+++||++|++|+|+|++||||||+++++.|++|||+||+|+||++|||||||||+|||||+
T Consensus 82 ~SHa~GvG-------~~l~~~~vRaim~~r~nsLa~G~SGvr~~vi~~LlalLN~gv~P~iP~~GSVGASGDLapLaHma 154 (498)
T COG2986 82 LSHACGVG-------EPLPEEIVRAIMALRLNSLARGYSGVRLEVIELLLALLNKGVIPVIPSKGSVGASGDLAPLAHMA 154 (498)
T ss_pred HHhhccCC-------CCCcHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCeecCCCCCCCcccccccHHHHHH
Confidence 99999995 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005031 218 GLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQ 297 (718)
Q Consensus 218 ~~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~ 297 (718)
++|+|||+++ |+|+++|++|||+++||+|++|++||||||||||++|||+|+++++||++|+.++++++||++|+++
T Consensus 155 l~liGeG~a~---~~G~~~~a~~AL~~aglePi~L~aKEGLALiNGTq~~tg~a~lal~~Ae~L~~~A~~~~ALs~Eal~ 231 (498)
T COG2986 155 LALIGEGEAF---YQGERLSAAEALAKAGLEPVTLAAKEGLALINGTQVSTALALLALFRAERLLRTALIAGALSTEALM 231 (498)
T ss_pred HHHhcCceee---eCCEeccHHHHHHHcCCCCcccccccceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 9999999976 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCChhhhhcCCCchHHHHHHHHHHHhcCCccchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 005031 298 GKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIE 377 (718)
Q Consensus 298 G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie 377 (718)
|+..+|||+||.+||||||+++|++||++|.||++|+... ..++||||||||+|||||+++|+|+++++.++
T Consensus 232 g~~~~fd~~i~~~Rp~~Gq~~~a~~lR~lLagS~~~~~~~--------~~rvQDpySlRc~PQV~GA~~d~l~~~~~~le 303 (498)
T COG2986 232 GSDAPFDERIHALRPHPGQIDVAAALRALLAGSAIRRSHL--------EQRVQDPYSLRCQPQVHGACLDALRQAARVLE 303 (498)
T ss_pred CCccccchHHHHhCCCccHHHHHHHHHHHhccCcchhccc--------cccccCcchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987643 25899999999999999999999999999999
Q ss_pred HHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchh
Q 005031 378 REINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGF 457 (718)
Q Consensus 378 ~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf 457 (718)
+|+||+||||||+.+.++|+|||||||+||++|||+|++|++++|.+++||+.+|+||.+| |||+||+ ++||+|+||
T Consensus 304 ~ElNsvtDNPlv~~~~~~ViSgGNFhg~pva~A~D~L~iAlae~a~iseRRi~~Lvnp~~s-gLP~FL~--~~~G~nsGf 380 (498)
T COG2986 304 IELNSVTDNPLVFGDEEEVISGGNFHGEPVALAADFLAIALAELAAISERRIARLVNPALS-GLPAFLV--PKPGLNSGF 380 (498)
T ss_pred hhhhhcCCCCcccCCCCccccCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhc-cCCcccc--CCCCcccch
Confidence 9999999999999999999999999999999999999999999999999999999999997 9999999 589999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Q 005031 458 KGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHT 537 (718)
Q Consensus 458 ~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~ 537 (718)
|++||++|||++|||.||+|+|+++.|++.+||||+|||++++||+++++||+++|+|||++++|||+|||. ...+++.
T Consensus 381 MI~Q~taAAL~sENk~LA~PaSvDs~ptSanqEDhvSm~~~aa~k~~~iien~~~IlaiE~l~AaQa~dlr~-~~~~s~~ 459 (498)
T COG2986 381 MIAQYTAAALVSENKVLAHPASVDSIPTSANQEDHVSMATHAARKLLEIIENLRTILAIELLAAAQAVDLRA-PLDLSPG 459 (498)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCccccCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc-ccccChH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 4459999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHhhc
Q 005031 538 VKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADRE 575 (718)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~~~ 575 (718)
++.+++.+|++|++++ .||++.+||+++.+..
T Consensus 460 t~~~~~~vR~~V~~~~------~DR~~~~Di~~~~~~l 491 (498)
T COG2986 460 TKAAYAAVREKVPFLD------DDRPFAPDIEAAAALL 491 (498)
T ss_pred HHHHHHHHHhhCCccc------cCCccchhHHHHHHHH
Confidence 9999999999999866 5999999999987654
No 5
>TIGR01225 hutH histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase.
Probab=100.00 E-value=6.6e-143 Score=1195.46 Aligned_cols=487 Identities=32% Similarity=0.484 Sum_probs=467.7
Q ss_pred EEEcCCCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccc--cchhhhHHHHHHH
Q 005031 62 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRF 139 (718)
Q Consensus 62 i~l~G~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Lir~ 139 (718)
|+|||++||++||++||+++.+|+|++++++||++|++++++.+++|++|||||||||+++|+++ ++..+||+||||+
T Consensus 1 v~l~g~~Lt~~~v~~va~~~~~v~ls~~a~~~i~~s~~~l~~~~~~g~~iYGvnTGfG~~~d~~i~~~~~~~lq~nLi~s 80 (506)
T TIGR01225 1 VTLDGGSLTLEDVVAVARHGARVSLSAAAREAVAKSRAAIEQIIAGDETVYGINTGFGKLASTRIDSEDLAELQRNLVRS 80 (506)
T ss_pred CEeCCCCCCHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeecCCCCCccCcccCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999985 6789999999999
Q ss_pred hhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHH
Q 005031 140 LNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGL 219 (718)
Q Consensus 140 ~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~ 219 (718)
|+||+| ++||+++|||+|++|+|+|++|||||||+++|+|++|||+||+|+||++|||||||||+||||||++
T Consensus 81 ha~GvG-------~~l~~~~vRa~m~~Rlnsl~~G~SGvr~~vv~~L~~~LN~gi~P~VP~~GSvGaSGDL~pLAhial~ 153 (506)
T TIGR01225 81 HAAGVG-------DPLDEEVVRAIMALRLNSLAKGYSGVRAEVLDQLIALLNAGVHPVVPEKGSVGASGDLAPLAHMALV 153 (506)
T ss_pred HhcCCC-------CCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCcCcccchHHHHHHHHH
Confidence 999994 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005031 220 LTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGK 299 (718)
Q Consensus 220 L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~ 299 (718)
|+|||+++ |+|+++++.|||+++||+|++|++||||||||||++|+|+++++++++++|++++++++||++|+|+|+
T Consensus 154 LiGeg~v~---~~G~~~~a~eaL~~~gl~P~~l~~KEgLALiNGt~~~~a~aalal~~a~~L~~~a~~~~Als~Eal~g~ 230 (506)
T TIGR01225 154 LMGEGKAF---FKGERMPAAEALAAAGLEPVTLAAKEGLALINGTQAMTALALLALFDAEDLLRAADITAALSVEALLGT 230 (506)
T ss_pred HcCCCceE---ECCEeecHHHHHHHcCCCCCCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 99999875 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCChhhhhcCCCchHHHHHHHHHHHhcCCccchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 005031 300 PEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIERE 379 (718)
Q Consensus 300 ~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~E 379 (718)
+++|||++|++||||||+++|++||.+|+||+++.... ..+++||||||||+||||||++|+|++++++|++|
T Consensus 231 ~~~f~~~i~~~RphpGQ~~~A~~ir~lL~gS~l~~~~~-------~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~ve~E 303 (506)
T TIGR01225 231 TKPFDPDIHEARPHRGQIDVAARFRELLAGSEITLSHR-------DCDRVQDAYSLRCQPQVHGAVLDTLDQVAEVLGIE 303 (506)
T ss_pred chhhCHHHHHhCCChhHHHHHHHHHHHhCCCccchhcc-------cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876531 13579999999999999999999999999999999
Q ss_pred HhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchhhH
Q 005031 380 INSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKG 459 (718)
Q Consensus 380 lNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~ 459 (718)
|||+||||||++++++++|||||||+||+++||++++|++++|++++||+.+|+||.+| |||+||+ ++|++++|||+
T Consensus 304 lNS~tDNPli~~~~~~v~~gGNFhg~~vala~D~l~iAla~la~~serr~~~L~~p~~s-gLP~fL~--~~~g~~sGf~~ 380 (506)
T TIGR01225 304 LNSATDNPLVFADGGEVVSGGNFHGEPVALAADFLAIAIAELGSISERRIERLLDPNLS-GLPPFLA--PDGGLNSGFMI 380 (506)
T ss_pred HhcCCCCCceeCCCCceeeCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhC--CCCCcccchHH
Confidence 99999999999877899999999999999999999999999999999999999999997 9999998 47899999999
Q ss_pred HHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 005031 460 AEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVK 539 (718)
Q Consensus 460 ~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~~~ 539 (718)
+||+++||++|||+||+|+|+|++|++.+||||||||++||||+.+++|++++|+|||++++|||+|||.. ...++..+
T Consensus 381 ~q~taaal~aE~r~La~PaS~~s~pts~~~ED~vSmg~~aar~~~~~v~~~~~ilAiEll~a~QAldlr~~-~~~~~~~~ 459 (506)
T TIGR01225 381 AQYTAAALVSENKALSHPASVDSIPTSANQEDHVSMGAHAARKLREMIENVRRVIAIELLAACQGLEFRDP-LKTSAKLE 459 (506)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCcccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999973 45689999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHhhc
Q 005031 540 NTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADRE 575 (718)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~~~ 575 (718)
++++.+|+.+++++ .||++.+||.++.+..
T Consensus 460 ~~~~~vR~~vp~~~------~DR~~~~dI~~~~~~l 489 (506)
T TIGR01225 460 KAYQAVRSVVAPLD------GDRFFAPDIEAARDLV 489 (506)
T ss_pred HHHHHHHHhCCCCc------CCCCcHHHHHHHHHHH
Confidence 99999999998755 6999999999987654
No 6
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members of this protein family are tyrosine 2,3-aminomutase. It is variable from member to member as to whether the (R)-beta-Tyr or (S)-beta-Tyr is the preferred product from L-Tyr. This enzyme tends to occur in secondary metabolite biosynthesis systems, as in the production of chondramides in Chondromyces crocatus.
Probab=100.00 E-value=1.7e-141 Score=1185.45 Aligned_cols=491 Identities=31% Similarity=0.459 Sum_probs=465.9
Q ss_pred EcCCCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccc--cchhhhHHHHHHHhh
Q 005031 64 LGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLN 141 (718)
Q Consensus 64 l~G~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Lir~~~ 141 (718)
|||.+||++||++||+++++|+|++++++||++|++++++.+++|++|||||||||+++|+++ ++.++||+|||++|+
T Consensus 1 l~g~~Lt~~dv~~va~~~~~v~ls~~a~~ri~~sr~~l~~~~~~g~~iYGvnTGfG~~~d~~i~~~~~~~lQ~nLi~sha 80 (507)
T TIGR03832 1 IDGETLTVDAVRRVAEQRAPCRVPAESLAKAAKSRAIFEGIAEQNVPIYGVTTGYGEMIYMLVDKEHEVELQTNLVRSHS 80 (507)
T ss_pred CCCCCCCHHHHHHHHhCCCCeeeCHHHHHHHHHHHHHHHHHHhcCCceeeecCCCCCccCccCCHHHHHHHHHHHHHHHh
Confidence 589999999999999989999999999999999999999999999999999999999999976 577899999999999
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHHhc
Q 005031 142 AGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLT 221 (718)
Q Consensus 142 aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~ 221 (718)
||+| +++|+++|||+|++|+|+|++|||||||+++|+|++|||+||+|+||++|||||||||+||||||++|+
T Consensus 81 ~GvG-------~~l~~~~vRa~m~iRln~l~~G~SGvr~~vve~L~~~LN~gi~PvVP~~GSvGaSGDL~pLAhial~L~ 153 (507)
T TIGR03832 81 AGVG-------PLFAEDEARAIVAARLNALAKGHSAVRPEILERLALYLNLGITPAIPEIGSLGASGDLAPLSHVASTLI 153 (507)
T ss_pred cCCC-------CCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCcCcccchHHHHHHHHHHc
Confidence 9994 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 005031 222 GRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPE 301 (718)
Q Consensus 222 G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~ 301 (718)
|+|+++ |+|+++++.|||+++||+|++|+|||||||||||++|+|+++++++++++|++++++++||++|+|+|+.+
T Consensus 154 Geg~v~---~~G~~~~a~eaL~~~gl~Pl~L~~KEgLALiNGt~~~~a~aala~~~a~~Ll~~a~~~~Als~Eal~g~~~ 230 (507)
T TIGR03832 154 GEGYVL---RDGRPVETAQVLRERGIEPLELRFKEGLALINGTSAMTGLGALVVGRALEQVQQAEIVTALVIEALRGSTG 230 (507)
T ss_pred CCCcee---ECCEeecHHHHHHHcCCCCcCCCCcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 999865 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhhh-cCCCchHHHHHHHHHHHhcCCccchhhhhhcc-----------cCCCCCCCCccccccchhhhhhHHHHHH
Q 005031 302 FTDHLTHK-LKHHPGQIEAAAIMEHILDGSSYVNAAKKLHE-----------IDPLQKPKQDRYALRTSPQWLGPQIEVI 369 (718)
Q Consensus 302 ~fd~~ih~-~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~-----------~d~~~~~~QD~YSlR~~PQvlG~~~d~l 369 (718)
+|||++|+ +||||||+++|++||.+|+||+++........ ..+..+++||||||||+||||||++|+|
T Consensus 231 ~f~~~~~~~~RphpGQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQD~ySlRc~PQv~Ga~~d~l 310 (507)
T TIGR03832 231 PFLAEGHDIARPHPGQIDSAANMRALMRGSGLTVEHADLRREVQERKEAEKSVQRTEIYMQKAYSLRAIPQVLGAVRDTL 310 (507)
T ss_pred hcCHHHHhhcCCCchHHHHHHHHHHHhccCccchhchhhhccccccccccccccccCCcCCccccchhHHHHHHHHHHHH
Confidence 99999997 69999999999999999999999875432110 0112357999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCC
Q 005031 370 RFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGR 449 (718)
Q Consensus 370 ~~a~~~ie~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~ 449 (718)
++++++|++||||+||||+|+ ++++|+|||||||+||+++||++++||+++|++++||+.+|+||.+|+|||+||+. +
T Consensus 311 ~~~~~~le~ElNs~~DNPli~-~~~~v~sgGNFhg~~va~a~D~L~iAla~la~~serR~~~L~~p~~s~gLP~fL~~-~ 388 (507)
T TIGR03832 311 YHARTKLEIELNSANDNPLFF-EGREIFHGANFHGQPVAFAMDFVTIALTQLGVLSERRLNRLLNRHLSYGLPEFLVA-G 388 (507)
T ss_pred HHHHHHHHHHHccCCCCCccc-CCCccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhCC-C
Confidence 999999999999999999998 56789999999999999999999999999999999999999999998899999985 4
Q ss_pred CCCccchhhHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005031 450 NPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRH 529 (718)
Q Consensus 450 ~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~ 529 (718)
+||+++|||++||+++||++|||+| +|+|+|++|++++||||||||++||||+.++++++++|+|||++++|||+|||.
T Consensus 389 ~~g~~sGfm~~Q~~aaaL~aE~r~L-~PaS~~s~pts~~~ED~vSmg~~aark~~~~v~~~~~ilAiEll~aaQAldlr~ 467 (507)
T TIGR03832 389 DPGLHSGFAGAQYPATALVAENRTI-GPASTQSVPSNGDNQDVVSMGLIAARNARRVLSNNNKILAVELLAAAQAVDLAG 467 (507)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHh-CCCccCCccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8899999999999999999999999 999999999999999999999999999999999999999999999999999997
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHh
Q 005031 530 LEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAAD 573 (718)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~ 573 (718)
...++++..+++++.+|+.+++++ .||++.+||.++.+
T Consensus 468 ~~~~~~~~~~~~~~~vr~~vp~~~------~DR~l~~di~~~~~ 505 (507)
T TIGR03832 468 RFDGLSPAARATYEAVRRLVPTLG------VDRYMADDIELVAD 505 (507)
T ss_pred ccccCCHHHHHHHHHHHHhCCCCc------CCCCcHHHHHHHHH
Confidence 555689999999999999998755 69999999998765
No 7
>PRK09367 histidine ammonia-lyase; Provisional
Probab=100.00 E-value=2.2e-140 Score=1176.08 Aligned_cols=488 Identities=34% Similarity=0.506 Sum_probs=467.8
Q ss_pred CeEEEcCCCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccc--cchhhhHHHHH
Q 005031 60 PVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELI 137 (718)
Q Consensus 60 ~~i~l~G~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Li 137 (718)
.+|+|||++||++||++||+++.+|+|++++++||++||+++++.+++|++|||||||||+++|+++ ++..+||+|||
T Consensus 2 ~~v~l~g~~Lt~~~v~~va~~~~~v~ls~~~~~ri~~sr~~l~~~~~~~~~iYGvnTG~G~~~~~~i~~~~~~~lq~nLi 81 (500)
T PRK09367 2 MTITLTPGTLTLEDLRAVAREGAKVELDPSARAAIAASRAVVERIVAEGRPVYGINTGFGKLASVRIAPEDLEQLQRNLV 81 (500)
T ss_pred ceEEECCCCCCHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCccccCcccCHHHHHHHHHHHH
Confidence 3589999999999999999989999999999999999999999999999999999999999999987 67789999999
Q ss_pred HHhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHH
Q 005031 138 RFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIA 217 (718)
Q Consensus 138 r~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia 217 (718)
|+|+||+| ++||+++|||+|++|+|+|++||||||+|++|+|++|||+||+|+||++|||||||||+||||||
T Consensus 82 ~sha~GvG-------~~l~~~~vRa~m~~Rln~l~~G~SGV~~ev~~~L~~~lN~~i~P~VP~~GSvGaSGDL~pLahia 154 (500)
T PRK09367 82 LSHAAGVG-------EPLPEEVVRLMMLLRLNSLARGHSGVRPEVIEALLALLNAGVTPVIPEKGSVGASGDLAPLAHMA 154 (500)
T ss_pred HHHHcCCC-------CCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCccccccHHHHHHHH
Confidence 99999994 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005031 218 GLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQ 297 (718)
Q Consensus 218 ~~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~ 297 (718)
++|+|+|+++ |+|+++++.|||+++||+|++|+|||||||||||++|+|+++++++++++|++++++++||++|+++
T Consensus 155 l~L~Geg~v~---~~G~~~~a~eal~~~gl~p~~l~~KegLALinGt~~~~a~~al~l~~a~~l~~~a~~~~Als~Eal~ 231 (500)
T PRK09367 155 LVLLGEGEAF---YKGERLPAAEALAKAGLEPVTLAAKEGLALINGTQASTALALLGLFDAEDLLAAADVAGALSVEALL 231 (500)
T ss_pred HHHhCCCcee---eCCEeecHHHHHHHcCCCCcCCCCcchhHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999864 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCChhhhhcCCCchHHHHHHHHHHHhcCCccchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 005031 298 GKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIE 377 (718)
Q Consensus 298 G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie 377 (718)
|++++|||++|++||||||+++|++||++|+||+++...+ ..+++||||||||+||||||++|+|++++++|+
T Consensus 232 g~~~~f~~~~~~~Rph~Gq~~~A~~lr~lL~gS~l~~~~~-------~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~v~ 304 (500)
T PRK09367 232 GSDAPFDARIHALRGHPGQIDVAANLRALLEGSSIITSSH-------DCERVQDPYSLRCQPQVHGACLDQLRYAAEVLE 304 (500)
T ss_pred CchhhhCHHHHHhCCChhHHHHHHHHHHHHcCCccccccc-------CCCcCCccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876532 135799999999999999999999999999999
Q ss_pred HHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchh
Q 005031 378 REINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGF 457 (718)
Q Consensus 378 ~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf 457 (718)
+||||+||||+|+++ ++++|||||||+||+++||++++|++++|++++||+.+|+||.+| |||+||+ ++|++++||
T Consensus 305 ~ElNS~~DNPlv~~~-~~v~~gGNF~g~~lala~D~L~iAla~la~~serR~~~L~~p~~s-gLp~fL~--~~~g~~~G~ 380 (500)
T PRK09367 305 IEANAVTDNPLVFPD-GDVISGGNFHGEPVAFAADFLAIAVAEIGSISERRIARLVDPALS-GLPPFLV--PDPGLNSGF 380 (500)
T ss_pred HHHhcCCcCCcccCC-CCeeeCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhC--CCCCcccch
Confidence 999999999999874 789999999999999999999999999999999999999999997 9999998 478999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Q 005031 458 KGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHT 537 (718)
Q Consensus 458 ~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~ 537 (718)
|++||+++||++|||+||+|+|.|++|++.+||||+|||++||||+.+++|++++|+|||++++|||+|||. ..++++.
T Consensus 381 ~~~q~taaal~ae~r~la~PaS~~s~pts~~~ED~~Smg~~aark~~~~~~~~~~ilAiell~a~QA~dlr~-~~~~~~~ 459 (500)
T PRK09367 381 MIAQVTAAALVSENKTLAHPASVDSIPTSANQEDHVSMGTHAARKLREMAENLRRVLAIELLAAAQGLDFRA-PLKTSPA 459 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCcCccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCChH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 3457899
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHhhc
Q 005031 538 VKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADRE 575 (718)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~~~ 575 (718)
.+++++.+|+.+++++ +||++.+||.++.+..
T Consensus 460 ~~~~~~~vr~~vp~~~------~Dr~l~~di~~~~~~l 491 (500)
T PRK09367 460 LEAAYALLREKVPFLD------EDRYFAPDIEAAAELV 491 (500)
T ss_pred HHHHHHHHHhhCCCCc------cCCCchHHHHHHHHHH
Confidence 9999999999998755 6999999999987754
No 8
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4.3.1.24 from EC) and the mechanistically related protein histidine ammonia lyase (HAL; 4.3.1.3 from EC). Both contain a catalytic Ala-Ser-Gly triad that is post-translationally cyclised []. PAL is a key biosynthetic catalyst in phenylpropanoid assembly in plants and fungi, and is involved in the biosynthesis of a wide variety of secondary metabolites such as flavanoids, furanocoumarin phytoalexins and cell wall components. These compounds are important for normal growth and in responses to environmental stress. HAL catalyses the first step in histidine degradation, the removal of an ammonia group from histidine to produce urocanic acid. The core domain in PAL and Hal share about 30% sequence identity, with PAL containing an additional approximately 160 residues extending from the common fold [].; GO: 0016841 ammonia-lyase activity, 0009058 biosynthetic process; PDB: 2RJR_A 2RJS_A 2OHY_B 3KDZ_B 2QVE_A 3KDY_A 2NYF_A 2YII_B 1Y2M_B 1T6P_B ....
Probab=100.00 E-value=8.4e-137 Score=1143.55 Aligned_cols=470 Identities=38% Similarity=0.578 Sum_probs=423.2
Q ss_pred EEEcCCCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccc--cchhhhHHHHHHH
Q 005031 62 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRF 139 (718)
Q Consensus 62 i~l~G~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Lir~ 139 (718)
|+|||++||++||++||+++.+|+|+|++++||++||+++++.+++|+||||||||||+++|+++ ++..++|+|||++
T Consensus 1 i~l~g~~Lti~~v~~va~~~~~v~l~~~a~~ri~~sr~~l~~~~~~~~~iYGvnTG~G~~~~~~i~~~~~~~~q~nll~~ 80 (473)
T PF00221_consen 1 IVLDGESLTIDDVVAVARGGAKVELSPEARERIEASRAFLEDILASGKPIYGVNTGFGALKDVRIPPEELAELQRNLLRS 80 (473)
T ss_dssp EEESSSS--HHHHHHHHHSTSEEEE-HHHHHHHHHHHHHHHHHHHTTCTCTTTSBSSGGGTTSBC-GHHHHHHHHHHHHH
T ss_pred CeeCCCCCCHHHHHHHHcCCCcEEECHHHHHHHHHHHHHHHHHHhcCCceeccccCCccccCCcCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999987 7889999999999
Q ss_pred hhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHH
Q 005031 140 LNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGL 219 (718)
Q Consensus 140 ~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~ 219 (718)
|+||+| +++|+++|||+|++|+|+|++||||||||++|+|++|||+||+|+||++|||||||||+||||||++
T Consensus 81 h~~gvG-------~~l~~~~vRa~m~~Rln~l~~G~SGv~~e~v~~l~~~ln~~i~P~Vp~~GSvGaSGDL~pLahial~ 153 (473)
T PF00221_consen 81 HAAGVG-------PPLPPEVVRAAMLLRLNSLARGYSGVRPELVERLVEMLNRGITPVVPERGSVGASGDLAPLAHIALA 153 (473)
T ss_dssp H---EE-------EEB-HHHHHHHHHHHHHHHTTSTS---HHHHHHHHHHHHHTEEE-BEEES-SSSSSSHHHHHHHHHH
T ss_pred hccccc-------cCCCHHHHHHHHHHHHHHHccCCCccCHHHHHHHHHHHhCCCCceeeCCCCCCccccHHHHHHHHHH
Confidence 999995 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005031 220 LTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGK 299 (718)
Q Consensus 220 L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~ 299 (718)
|+|||+++ |+|+++|+.|||+++||+|++|+|||||||||||++++|+++++++++++|++++++++||++|+++|+
T Consensus 154 l~Geg~v~---~~G~~~~a~eal~~~gl~p~~l~~kEgLAlinGt~~~~a~aalal~~a~~ll~~a~~~~Als~Eal~g~ 230 (473)
T PF00221_consen 154 LIGEGEVY---YDGERMPAAEALARAGLEPLELGPKEGLALINGTAVSTALAALALHDARRLLRLADIVAALSLEALRGN 230 (473)
T ss_dssp HTTSTTEE---ECTEEEEHHHHHHHTT-SS---TTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-B
T ss_pred HcCCccee---ecceeccHHHHHHhcCcCCeecCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999875 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCChhhhhcCCCchHHHHHHHHHHHhcCCccchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 005031 300 PEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIERE 379 (718)
Q Consensus 300 ~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~E 379 (718)
++||||++|++||||||+++|++||++|+||+++...+ ++||||||||+||||||++|+|++++++|++|
T Consensus 231 ~~~f~~~~~~~rph~Gq~~~A~~lr~lL~gS~l~~~~~----------~vQDpySlRc~PQv~G~~~d~l~~~~~~v~~E 300 (473)
T PF00221_consen 231 PSPFDPRVHAARPHPGQIESAANLRELLKGSYLWSSHD----------RVQDPYSLRCAPQVHGAARDALAHAREVVEIE 300 (473)
T ss_dssp CGGG-HHHHHTST-HHHHHHHHHHHHHHTT-SSSBHHH----------CSSS-HHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccCCchHHHHHHHHHHhhCCCcCccccc----------ccCCcceeeehHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987643 59999999999999999999999999999999
Q ss_pred HhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchhhH
Q 005031 380 INSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKG 459 (718)
Q Consensus 380 lNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~ 459 (718)
|||++|||+|++++++++||||||++||+++||++++|++++|++++||+.+|+||.+|+|||+||++ +|++++|||+
T Consensus 301 lNs~~DNPlv~~~~~~v~~ggnF~~~~va~a~D~l~~Ala~l~~~s~rR~~~L~~p~~~~gLP~fL~~--~~g~~~G~~~ 378 (473)
T PF00221_consen 301 LNSATDNPLVFPDDGRVLSGGNFHGQPVALAMDALAIALAHLANLSERRIARLVNPAFNNGLPPFLAA--EPGLNSGFMI 378 (473)
T ss_dssp HTS--SSSEEEGGGTEEE-S-TT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTS-GGGSS--SCTTB-TTHH
T ss_pred HcCCCCCceEecCCCeeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcCCCChhhcC--CCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999998899999995 7899999999
Q ss_pred HHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 005031 460 AEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVK 539 (718)
Q Consensus 460 ~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~~~ 539 (718)
+||++++|++|+|+|++|+|.|++|++++||||+|||++||||+.+++|++++|+|||++++|||+|||.....+++..+
T Consensus 379 ~q~~aaaL~aE~r~La~P~s~~s~pts~~~ED~~Sm~~~aa~k~~~~v~~~~~ilAiell~a~QA~dlr~~~~~~~~~~~ 458 (473)
T PF00221_consen 379 LQYTAAALVAENRHLANPASIDSIPTSGGQEDHVSMGPLAARKLRRIVENLRYILAIELLAAAQALDLRGPERSLGPGTR 458 (473)
T ss_dssp HHHHHHHHHHHHHHHTS-SCGGG--BTTTTBSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhhccCcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999965566799999
Q ss_pred HHHHHHHHHHhhcC
Q 005031 540 NTVSQVAKKVLTVG 553 (718)
Q Consensus 540 ~~~~~~~~~~~~~~ 553 (718)
++++.+|+.+++++
T Consensus 459 ~~~~~~R~~vp~~~ 472 (473)
T PF00221_consen 459 ALYDAVRSVVPFLD 472 (473)
T ss_dssp HHHHHHHHHSTT-S
T ss_pred HHHHHHHHhCCccc
Confidence 99999999998764
No 9
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=100.00 E-value=2.7e-135 Score=1122.24 Aligned_cols=442 Identities=41% Similarity=0.584 Sum_probs=428.3
Q ss_pred CCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccccc--chhhhHHHHHHHhhccc
Q 005031 67 ETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK--NGGALQKELIRFLNAGI 144 (718)
Q Consensus 67 ~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~~--~~~~LQ~~Lir~~~aGv 144 (718)
.+||++||++||+++.+|+|++++++||++|++++++.+++|++|||||||||+++|++++ +..++|+||||+|+||+
T Consensus 1 ~~Lt~~~v~~va~~~~~v~ls~~a~~ri~~s~~~l~~~~~~~~~iYGvnTG~G~~~d~~i~~~~~~~~q~nLi~sha~Gv 80 (444)
T cd00332 1 GSLTLEDVVAVARGGEKVELSPEARERVDASRAALEEAAAEGKPVYGVNTGFGALADVRIDDADLRALQRNLLRSHAAGV 80 (444)
T ss_pred CCCCHHHHHHHHhCCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeeCCCCCCcCCcccCHHHHHHHHHHHHHHHhcCC
Confidence 4799999999999899999999999999999999999999999999999999999999864 47899999999999999
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHHhccCC
Q 005031 145 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRP 224 (718)
Q Consensus 145 ~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~G~~ 224 (718)
| +++|+++|||+|++|+|+|++|||||||+++|+|++|||+||+|+||++|||||||||+||||||++|+|||
T Consensus 81 G-------~~l~~~~vRa~m~~Rln~l~~G~SGV~~~vv~~L~~~lN~~i~P~VP~~GSvGaSGDL~pLahial~l~Geg 153 (444)
T cd00332 81 G-------PPLPEEVVRAAMLLRLNSLARGHSGVRPEVLERLVALLNAGVTPVVPERGSVGASGDLAPLAHIALALIGEG 153 (444)
T ss_pred C-------CCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCcccccchHHHHHHHHHHcCCC
Confidence 4 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Q 005031 225 NSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTD 304 (718)
Q Consensus 225 ~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd 304 (718)
+++ |+|+++++.|||+++||+|++|++||||||||||++|+|+++++++++++|++++++++||++|+++|+.++||
T Consensus 154 ~v~---~~G~~~~a~eal~~~gl~p~~l~~KegLALingta~~~a~aalal~~a~~l~~~a~~~~Als~Eal~g~~~~f~ 230 (444)
T cd00332 154 EVF---YKGERMPAAEALARAGLEPLELGAKEGLALINGTAVMTALAALALHDAERLLDLADIAGALSLEALRGSDAPFD 230 (444)
T ss_pred cEE---ECCEEeeHHHHHHHcCCCCCCCCCcchhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhcC
Confidence 865 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCchHHHHHHHHHHHhcCCccchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhccC
Q 005031 305 HLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVN 384 (718)
Q Consensus 305 ~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~t 384 (718)
|++|++||||||+++|++||.+|+||++|... +..+++||||||||+||||||++|+|++++++|++||||++
T Consensus 231 ~~~~~~rphpGq~~~A~~lr~lL~gs~l~~~~-------~~~~~lQDpySlRc~PQv~G~~~d~l~~~~~~v~~ElNs~~ 303 (444)
T cd00332 231 PRIHAARPHPGQIEVAANLRALLAGSSLWESH-------DGERRVQDPYSLRCAPQVHGAARDALRYAARVLEIELNSVT 303 (444)
T ss_pred HhHHhhCCChhHHHHHHHHHHHhCCCcccccc-------CCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999987321 12358999999999999999999999999999999999999
Q ss_pred CCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchhhHHHHHH
Q 005031 385 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAM 464 (718)
Q Consensus 385 DNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~ 464 (718)
|||+|++++++++|||||||+||+++||++++|++++|++++||+.+|+||.+| |||+||++ +|++++|||++||++
T Consensus 304 DNPli~~~~~~v~~ggNF~~~~va~a~D~l~iala~la~~s~rr~~~L~~p~~~-gLp~fL~~--~~g~~~Gf~~~q~~a 380 (444)
T cd00332 304 DNPLVDPDNGEVLSGGNFHGQPVALAMDFLAIALAELANLSERRIARLVNPALS-GLPAFLVA--DPGLNSGFMIAQYTA 380 (444)
T ss_pred CCCceeCCCCceeeCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhCC--CCCcccchHHHHHHH
Confidence 999999988899999999999999999999999999999999999999999997 99999984 788999999999999
Q ss_pred HHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005031 465 ASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 528 (718)
Q Consensus 465 aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR 528 (718)
+||++|||+||+|+|.|++|++++||||+|||++||||+.+++|++++|+|||++++|||+|||
T Consensus 381 aal~ae~r~la~P~s~~s~~~s~~~ED~~Sm~~~aa~~~~~~v~~~~~ilAiell~a~QA~dlr 444 (444)
T cd00332 381 AALVAENKALAHPASVDSIPTSAGQEDHVSMGLIAARKLREIVDNLRRILAIELLAAAQALDLR 444 (444)
T ss_pred HHHHHHHHHhcCCCcCCCccccCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 10
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.79 E-value=2.7e-19 Score=181.64 Aligned_cols=225 Identities=23% Similarity=0.127 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHHhccCCCccccCCCCeeecHH
Q 005031 160 TRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQ 239 (718)
Q Consensus 160 vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~G~~~~~~~~~~G~~~~a~ 239 (718)
+|+.|.+|+|.+..| |..+|+|++... ++|..+++
T Consensus 1 ~~~~~~i~~a~~~~~-----------------------------------------i~~~L~~~~~~~---~~~~~~~~- 35 (231)
T cd01594 1 VRADLLVELAAALAL-----------------------------------------VEEVLAGRAGEL---AGGLHGSA- 35 (231)
T ss_pred CHHHHHHHHHHHHHH-----------------------------------------HHHHHHHHHHHH---hccccCCC-
Confidence 589999999999998 888898886532 34444443
Q ss_pred HHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhhhhcCCCchHHHH
Q 005031 240 EASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEA 319 (718)
Q Consensus 240 eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~ 319 (718)
+..|++++..|+++++.+.+..++.++..++.....+.+...|..++++.++++ |
T Consensus 36 ------------~~h~g~s~~d~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~~a~~~~~~~~~~~t-------h------ 90 (231)
T cd01594 36 ------------LVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRT-------H------ 90 (231)
T ss_pred ------------CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEeeccc-------c------
Confidence 899999999999999999999999999999999999999999999999999987 1
Q ss_pred HHHHHHHhcCCccchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhccCCCcccccCCCccccC
Q 005031 320 AAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHG 399 (718)
Q Consensus 320 A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~G 399 (718)
+ ++ ..|+||+|+|||.||++|+.+|.|..+
T Consensus 91 ---------~----q~----------A~p~t~g~~~~~~~~~l~~~~~rL~~~--------------------------- 120 (231)
T cd01594 91 ---------L----QD----------AQPVTLGYELRAWAQVLGRDLERLEEA--------------------------- 120 (231)
T ss_pred ---------c----cc----------CccccHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 0 00 137999999999999999999999999
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhccCCCc
Q 005031 400 GNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVT 479 (718)
Q Consensus 400 GNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS 479 (718)
+++..++.+++++++++++.+.++..+.+|..+ ..|+++. ..++.+.+++..+..++.++.|+..+++|.+
T Consensus 121 ------~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~-~~~~~~~--~~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~ 191 (231)
T cd01594 121 ------AVAEALDALALAAAHLSKIAEDLRLLLSGEFGE-LGEPFLP--GQPGSSIMPQKVNPVAAELVRGLAGLVIGNL 191 (231)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCe-eeCccCC--CCCCCcCCCCCCCCHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999875 5566664 2566789999999999999999999999999
Q ss_pred ccccCcc-----ccchhhccchHHHHHHHHHHHHHHHHH
Q 005031 480 NHVQSAE-----QHNQDVNSLGLISSRKTAEAVDILKLM 513 (718)
Q Consensus 480 ~~~~sae-----~~nqDv~Sma~~sark~~~ave~l~~~ 513 (718)
.++.++. .+|||.++++...++.+.++.+.+..|
T Consensus 192 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~ 230 (231)
T cd01594 192 VAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLL 230 (231)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 8876665 789999999999999999999998775
No 11
>PLN02972 Histidyl-tRNA synthetase
Probab=95.06 E-value=0.06 Score=64.83 Aligned_cols=186 Identities=19% Similarity=0.171 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccCChhhh-hcCCCchHHHHHHHHHHHhcCCccchhhhhhcccCCCCCCCCccccccc
Q 005031 279 NNLALLSEILSAIFAEVMQGKPEFTDHLTH-KLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRT 357 (718)
Q Consensus 279 ~~L~~~a~v~~Als~Eal~G~~~~fd~~ih-~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~ 357 (718)
-.|....+.++|++||+.+|...+||-.-. +=-...-.+.+|..|.-||.||+++... +.-+|--
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 104 (763)
T PLN02972 39 TCLARVVDAVAALSCEAAKADVAAFDVLDSGDGLSDKDEADVAGDMKVLLNGSKLVGKA--------------QAEVFSK 104 (763)
T ss_pred hHHHHHHHHHHhcccHhhhcchhhccCCCCCCCcccccccchhccceeeecccchhhhh--------------HHHHHhc
Confidence 567888899999999999999999986433 2233445678999999999999987542 2356677
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH----hh
Q 005031 358 SPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSE----LV 433 (718)
Q Consensus 358 ~PQvlG~~~d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~----Lv 433 (718)
+|.++|-.+++.+..+..+.+|+||... -..++.+-. + +.+..|++.+|++++.|... +.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (763)
T PLN02972 105 IPKINGIFREAVKAVHAVVRIELNSPVK----LGKRDAIQT---------G---EGLARAVQALGKLSVARAKLCLEVIG 168 (763)
T ss_pred CcccchHHHHHHHHHHHHHHHHhcCccc----ccccCcchh---------h---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999998532 222222211 1 12778899999999988542 33
Q ss_pred ccccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHH
Q 005031 434 NDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLM 513 (718)
Q Consensus 434 n~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~ 513 (718)
|..+..+|.....- --.||+ .--++. .+|.+|+ .+.....+-+.+.+
T Consensus 169 ~~~~~~~~~~~~~~----~~~~~~-----------------~~~~~~--------~~~~~~~----~~~~~~~~~~~~~~ 215 (763)
T PLN02972 169 DEELRKKLTSGVVL----DNLYGL-----------------LLKVSI--------EEDAVSF----LHGVNNLLGIVWDI 215 (763)
T ss_pred cHHHHHhhhcceee----hhhhhh-----------------hhheee--------cchHHHH----HHHHHHHHHHHHHH
Confidence 33333333322211 001332 111111 1555554 35666777888999
Q ss_pred HHHHHHHHHHHHHh
Q 005031 514 SSTFLVALCQAIDL 527 (718)
Q Consensus 514 ~A~ell~a~QAidL 527 (718)
+|.|..++.-.++-
T Consensus 216 ~~~~~~~~~~~~~~ 229 (763)
T PLN02972 216 VAWEAAAAFAVLEG 229 (763)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999888877754
No 12
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=35.52 E-value=67 Score=35.95 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=36.6
Q ss_pred CcccccccCCCCCCccccc--ch-hhhHHHHHHHhhcccccCCCCCCCCCC-hHHHHHHHHH
Q 005031 109 TDSYGVTTGFGATSHRRTK--NG-GALQKELIRFLNAGIFGNGTESSHTLP-HSATRAAMLV 166 (718)
Q Consensus 109 ~~iYGVnTGfG~~a~~~~~--~~-~~LQ~~Lir~~~aGv~~~g~~~g~~lp-~~~vRA~Mlv 166 (718)
.+.|||||-||...-.+.. ++ -.++.+++...+.++.++|- .|+| ++.|-..|+-
T Consensus 10 ~v~sGVn~a~g~p~~~~p~~g~lslq~vs~~lk~~~~sasgtgv---~plPtppAv~s~~~t 68 (400)
T COG5613 10 SVTSGVNTASGTPGITQPETGKLSLQLVSNLLKSMNSSASGTGV---SPLPTPPAVHSLVTT 68 (400)
T ss_pred ccccCccccCCCCcccCcCCCcccHHHHHHHHHHhhccCCCCCC---CCCCCChHHHHHHhH
Confidence 4899999999976544432 22 23446799999999987652 4467 5655555543
No 13
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=27.80 E-value=1e+03 Score=29.34 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhcCC
Q 005031 593 QKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGS 647 (718)
Q Consensus 593 ~~l~~vl~d~~l~~~~~~~~~~~~~~~~I~~f~~~l~~~l~~~~~~~R~~f~~g~ 647 (718)
..+.+.|++.+....-.........++.+.+|+....+.....+.++|++|+..+
T Consensus 562 ~~~~~~l~~~l~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~~l~~e~~~~~~~~~ 616 (680)
T TIGR01226 562 YPLMQKLRQVLVEHALSNGEREKDLLSSFQKIQVFEAELKAVLPPDVRGARAAGD 616 (680)
T ss_pred HHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHhCHHHHHHHHHhcc
Confidence 3345677776443222221222335777888888888888888888888888754
No 14
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=27.04 E-value=41 Score=36.26 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=23.5
Q ss_pred hcCCcccccccC-CCCCCcccccchhhhHHHHHHHhh
Q 005031 106 NKGTDSYGVTTG-FGATSHRRTKNGGALQKELIRFLN 141 (718)
Q Consensus 106 ~~g~~iYGVnTG-fG~~a~~~~~~~~~LQ~~Lir~~~ 141 (718)
+.+.||||||+| +|-+.+...+ ++|+.+.+...
T Consensus 77 ~~~~pilgin~G~lGFLt~~~~~---~~~~~~~~~~~ 110 (281)
T COG0061 77 RLDIPVLGINLGHLGFLTDFEPD---ELEKALDALLE 110 (281)
T ss_pred cCCCCEEEEeCCCcccccccCHH---HHHHHHHHHhc
Confidence 456899999999 9999887744 44555444444
No 15
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=22.95 E-value=1.7e+02 Score=27.79 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=40.8
Q ss_pred EEEcCCCcCHHHHHH-HHcCCCceeeCH-HHHHHHHHHHHHHHHHHhcCCcccccccCCCCCC
Q 005031 62 VNLGGETLTVAQVAA-IATSSTNVELSE-SAREGVKASSDWVMESMNKGTDSYGVTTGFGATS 122 (718)
Q Consensus 62 i~l~G~~Lti~~v~a-vA~~~~~v~Ls~-~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a 122 (718)
....-+++|++||++ ++..+..+ ++ +...-+..-.+.+.+.+.+|..| ++|||-..
T Consensus 22 ~~~~~~~~tl~~Ia~~i~~~~s~~--t~~di~~vl~~~~~~~~~~l~~G~sV---~~glg~~s 79 (124)
T PF14848_consen 22 QVVSSGTLTLEDIAEEIAKEGSTL--TRADIEAVLNALKDEMIEALMNGYSV---NLGLGYFS 79 (124)
T ss_pred EEEecCccCHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHhCCCEE---EcCCEEEE
Confidence 335667899999976 66555554 53 46677777778888999999877 58998654
No 16
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.33 E-value=8.7e+02 Score=25.66 Aligned_cols=147 Identities=18% Similarity=0.159 Sum_probs=80.5
Q ss_pred HhhcCcHHHHHHHHhhcCCCeEEEcCCCcCHHHHHHHHcCC-CceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q 005031 41 TLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS-TNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFG 119 (718)
Q Consensus 41 ~~~~~h~~~v~~~~~~~~~~~i~l~G~~Lti~~v~avA~~~-~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG 119 (718)
...+.+++.++++.+.. .-.|.++|.-=|++|+......+ .+|.+.-+..+....-.+++... .++..+=++..=-|
T Consensus 57 ~~~~~n~~~i~~i~~~~-~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~-~~~~i~vsiD~k~g 134 (258)
T PRK01033 57 RGSEPNYELIENLASEC-FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERF-GSQSVVVSIDVKKN 134 (258)
T ss_pred CCCcccHHHHHHHHHhC-CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHh-CCCcEEEEEEEecC
Confidence 35677888887777643 34688999888999998887545 46788876666654444444333 22333333433111
Q ss_pred -----------CCCcccccchhhhHHHHHHHhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHH
Q 005031 120 -----------ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITK 188 (718)
Q Consensus 120 -----------~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~ 188 (718)
+..... .+..++-+ ++...|+.. .+=..+ +--..++|..++.++.+.+
T Consensus 135 ~~~~~~v~~~gw~~~~~-~~~~e~~~---~~~~~g~~~-------ii~~~i----------~~~G~~~G~d~~~i~~~~~ 193 (258)
T PRK01033 135 LGGKFDVYTHNGTKKLK-KDPLELAK---EYEALGAGE-------ILLNSI----------DRDGTMKGYDLELLKSFRN 193 (258)
T ss_pred CCCcEEEEEcCCeecCC-CCHHHHHH---HHHHcCCCE-------EEEEcc----------CCCCCcCCCCHHHHHHHHh
Confidence 000000 01111111 122333321 000000 0011378889999999887
Q ss_pred HHhCCCccccCCCCCCCCccCchhHHHHHHHh
Q 005031 189 LLNHNITPCLPLRGTITASGDLVPLSYIAGLL 220 (718)
Q Consensus 189 lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L 220 (718)
..+ +|++ |||+..-+.++..++
T Consensus 194 ~~~---ipvI-------asGGv~s~eD~~~l~ 215 (258)
T PRK01033 194 ALK---IPLI-------ALGGAGSLDDIVEAI 215 (258)
T ss_pred hCC---CCEE-------EeCCCCCHHHHHHHH
Confidence 643 6766 678887887777766
Done!