Query 005031
Match_columns 718
No_of_seqs 318 out of 1093
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w27_A Phenylalanine ammonia-l 100.0 9E-203 3E-207 1715.6 70.5 704 4-718 6-714 (714)
2 2yii_A Phenylalanine ammonia-l 100.0 6E-196 2E-200 1657.6 64.8 677 29-718 15-702 (705)
3 1y2m_A Phenylalanine ammonia-l 100.0 2E-183 6E-188 1559.4 57.7 659 26-708 21-716 (716)
4 3unv_A ADMH; MIO, lyase; HET: 100.0 7E-149 2E-153 1247.1 49.2 498 58-575 24-532 (547)
5 2nyn_A Phenylalanine/histidine 100.0 8E-147 3E-151 1234.3 46.5 505 61-575 25-547 (565)
6 1gkm_A Histidase, HAL, histidi 100.0 2E-146 8E-151 1221.7 46.0 486 61-575 2-490 (507)
7 2o6y_A Putative histidine ammo 100.0 2E-145 6E-150 1217.9 52.1 494 61-575 10-515 (521)
8 2qve_A Tyrosine aminomutase; M 100.0 2E-145 7E-150 1218.5 51.0 493 61-575 1-508 (526)
9 1gkm_A Histidase, HAL, histidi 15.1 2.7E+02 0.0091 31.3 7.2 43 655-701 455-497 (507)
10 3l9k_W Dynein intermediate cha 13.3 3.5E+02 0.012 19.9 5.0 28 85-112 10-37 (38)
No 1
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
Probab=100.00 E-value=8.9e-203 Score=1715.59 Aligned_cols=704 Identities=84% Similarity=1.278 Sum_probs=663.3
Q ss_pred CcccccCCCCCCcccccccCCCCCCCCCCCCHHHHHHHhhcCcHHHHHHHHhhcCCCeEEEcCCCcCHHHHHHHHcC---
Q 005031 4 GATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS--- 80 (718)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~i~l~G~~Lti~~v~avA~~--- 80 (718)
|+|| ||+.++...++|+.. .|||||++||++|+|||+|+|+||+++|+.+.|+|+|.+||++||++||++
T Consensus 6 ~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~l~g~~Ltl~dv~aVa~~~~~ 78 (714)
T 1w27_A 6 GATT-NGHVNGNGMDFCMKT------EDPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGS 78 (714)
T ss_dssp --------------------------CCTTSHHHHHHTTCSCHHHHHHHHHHHHTCSEEEECSSCCCHHHHHHHHCCSCC
T ss_pred CCcc-CCCCCCcccccccCC------CCCCChHHhhhhccCCHHHHHHHHHHHhcCCeEEECCCCCCHHHHHHHHhcCCC
Confidence 4555 445655557799863 599999999999999999999999999988999999999999999999987
Q ss_pred CCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccccchhhhHHHHHHHhhcccccCCCCCCCCCChHHH
Q 005031 81 STNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSAT 160 (718)
Q Consensus 81 ~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~v 160 (718)
+++|+|+|++++||++|+++|++.+++|++|||||||||+++|+++++..+||+||||+|+||++|.|+ +++||+++|
T Consensus 79 ~~~v~ls~~a~~rI~~sr~~v~~~~~~g~~VYGVnTGFG~la~~~~~~~~~LQ~nLirsHa~Gv~G~~~--~~~lp~~~v 156 (714)
T 1w27_A 79 GVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGS--DNTLPHSAT 156 (714)
T ss_dssp CCEEEECGGGHHHHHHHHHHHHHHHSTTTTSCSCCCSSCTTSCSSSSSCSHHHHHHHHHHCCCCCCSSS--TTBCCHHHH
T ss_pred CCeEeeCHHHHHHHHHHHHHHHHHHhcCCeeccccCCCCCcccccHHHHHHHHHHHHHHHhCCcCCCCC--CCCCCHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999953211 249999999
Q ss_pred HHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHHhccCCCccccCCCCeeecHHH
Q 005031 161 RAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQE 240 (718)
Q Consensus 161 RA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~G~~~~~~~~~~G~~~~a~e 240 (718)
||+|++|+|+|++||||||||++|+|++|||+||+|+||++|||| |||+||||||++|+|||+++++.|+|+++|+.|
T Consensus 157 RA~MllRlnsL~~G~SGVr~evve~L~~lLN~gi~P~VP~~GSVG--GDLaPLAhial~LiGeg~~~~v~~~G~~~~a~e 234 (714)
T 1w27_A 157 RAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTIT--XDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEE 234 (714)
T ss_dssp HHHHHHHHHTTTTSCSCCCHHHHHHHHHHHHTTCEECCBSSCCCS--SCHHHHHHHHHHHTTCTTCCEECTTSCEECHHH
T ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHHhCCCccccCCCCCcc--ccchHHHHHHHHHhCCCcccccccCCccccHHH
Confidence 999999999999999999999999999999999999999999999 999999999999999999877789999999999
Q ss_pred HHHHCCCC--CccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhhhhcCCCchHHH
Q 005031 241 ASKQAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIE 318 (718)
Q Consensus 241 AL~~aGl~--P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e 318 (718)
||+++||+ |++|+|||||||||||++|+|+|++++++|++|++++++++||++|+|+|++++|||++|++||||||++
T Consensus 235 AL~~aGl~~~Pl~L~~KEGLALiNGTa~~ta~aalal~~a~~L~~~A~v~~Als~Eal~G~~~~fd~~ih~~RpHpGQ~~ 314 (714)
T 1w27_A 235 AFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIE 314 (714)
T ss_dssp HHHHHTCSSSCCCCCTTHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHHHHTTCCHHHHH
T ss_pred HHHHcCCCCCCCCCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhChHHHhhCCChhHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhccCCCcccccCCCcccc
Q 005031 319 AAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALH 398 (718)
Q Consensus 319 ~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~ 398 (718)
+|++||++|+||+++....+.+..|+.++++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|
T Consensus 315 ~A~~ir~lL~gS~l~~~~~~~~~~~~~~~rvQD~YSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~s 394 (714)
T 1w27_A 315 AAAIMEHILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIH 394 (714)
T ss_dssp HHHHHHHHHHTCSSCCCCCSSCSSCCCCSSSCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSEEETTTTEEEC
T ss_pred HHHHHHHHhCccchhhhcccccccCcccCcCcCcceecchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCceee
Confidence 99999999999999876544445566667999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhccCCC
Q 005031 399 GGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPV 478 (718)
Q Consensus 399 GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~Pv 478 (718)
||||||+||+++||++++|+++||+++|||+++|+||.+|+|||+||+++++||+|||||++||++|||++|||+||||+
T Consensus 395 GGNFhg~pvA~AmD~L~iAla~lg~lserR~~~Lvdp~~~~GLP~fL~~~~~~glnsGfmi~Q~taAal~sEnk~LA~Pa 474 (714)
T 1w27_A 395 GGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPV 474 (714)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTSTTCCGGGCCSSCGGGCCTTHHHHHHHHHHHHHHHHHTSCS
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999976789999999999999999999999999999
Q ss_pred cccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCC
Q 005031 479 TNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGEL 558 (718)
Q Consensus 479 S~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (718)
|+|++|+++|||||||||++||||+.+++|++++|+||||+++|||+|||++++++++.++++++++|+++++++.+|++
T Consensus 475 Svds~pts~~qEDhvSmg~~aArk~~~~venl~~vlAiELl~a~QAiDlR~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~ 554 (714)
T 1w27_A 475 TNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGEL 554 (714)
T ss_dssp TTCCCCBTTTTBSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTTBCC
T ss_pred ccCCccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCCCccc
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred CCCcCCHHHHHHHHhhcchhhhccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCccchhhhhHHHHHHHHHhhhHHHHHH
Q 005031 559 HPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVEN 638 (718)
Q Consensus 559 ~~dr~~~~dl~~~~~~~~~~~~~~~~~~~~~~l~~~l~~vl~d~~l~~~~~~~~~~~~~~~~I~~f~~~l~~~l~~~~~~ 638 (718)
++.||+++|+.++++++++|+|++|||+.+||+|+|++++||||++++++.+++..+++|++|..|+++++++|+++|++
T Consensus 555 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 634 (714)
T 1w27_A 555 HPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVES 634 (714)
T ss_dssp SSCHHHHHHHHHHHHHSCGGGTTTSTTCTTSHHHHHHHHHHHHHHHTSGGGGGSGGGCSGGGHHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHhhhHHHHhhcCcccccchHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998776777777789999999999999999999999
Q ss_pred HHHHhhcCCCCCCCcccccccchhhHHhhhhcCcccccCccccCCCchhHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 005031 639 ARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 718 (718)
Q Consensus 639 ~R~~f~~g~~~~~~~ilg~~S~~LY~FVR~eLGv~~h~Ge~~~t~G~~is~i~~ai~~g~~~~~l~~cl~~~~~~~~~~~ 718 (718)
+|++|++|+.++|++|++|||||||+|||+|||||||+|++++|||+||||||+|||+|+++||||+||++|+|+|+|||
T Consensus 635 ~r~~f~~g~~~~~~~i~~~~s~~lY~fVR~~Lg~~~~~g~~~~~~g~~~~~i~~ai~~g~~~~~l~~~~~~~~~~~~~~~ 714 (714)
T 1w27_A 635 ARAALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC 714 (714)
T ss_dssp HHHHHHTTCCSSCCGGGGSTTHHHHHHHHTTSCCCCCCTTSSCCHHHHHHHHHHHHHTTTTHHHHHHTTTTCCSSCCCCC
T ss_pred HHHHHhcCCcCccchhhcCCchhHHHHHHHHcCCCcccCCCCCCCchhHHHHHHHHHCCccHHHHHHHHhhhcCCCCCCC
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
No 2
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A*
Probab=100.00 E-value=6.1e-196 Score=1657.58 Aligned_cols=677 Identities=47% Similarity=0.769 Sum_probs=617.6
Q ss_pred CCCCCCHHHHHHHhhcCcHHHHHHHHhhc-CCCeEEEcCCC-cCHHHHHHHHc-CCCceeeC-HHHHHHHHHHHHHHHHH
Q 005031 29 SGDALNWGVMAETLKGSHLEEVKRMVAEY-RKPVVNLGGET-LTVAQVAAIAT-SSTNVELS-ESAREGVKASSDWVMES 104 (718)
Q Consensus 29 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~i~l~G~~-Lti~~v~avA~-~~~~v~Ls-~~a~~ri~~s~~~l~~~ 104 (718)
+.||+||++||++ |||+++|++|+++| +.+.|+|+|.+ ||++||++||+ ++++|+|+ |++++||++|+++|++.
T Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~l~g~~~Ltl~dv~aVa~~~~~~v~ls~~~a~~rI~~sr~~v~~~ 92 (705)
T 2yii_A 15 VPRGSHMGFAVES--RSHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRK 92 (705)
T ss_dssp ----------------CHHHHHHHHHHHHHHCCEEEESSSSCCCHHHHHHHHHCTTCEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHhhc--cChHHHHHHHHHHhhcCCeEEECCCCCCCHHHHHHHHhcCCCeEeeChHHHHHHHHHHHHHHHHH
Confidence 4599999999999 99999999999999 67889999999 99999999996 56999999 99999999999999999
Q ss_pred HhcCCcccccccCCCCCCcccccchhhhHHHHHHHhhcccccCCCCC-CCCCChHHHHHHHHHHHHHhcCCCCcCcHHHH
Q 005031 105 MNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTES-SHTLPHSATRAAMLVRVNTLLQGYSGIRFEIL 183 (718)
Q Consensus 105 ~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~-g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evl 183 (718)
+++|++|||||||||+++++++++..+||+||||+|+||+++.|.+. +++||+++|||+|++|+|+|++||||||+|++
T Consensus 93 ~~~g~~VYGVnTGFG~la~~~~~~~~~LQ~nLirsHa~GvG~~G~~~~~~~lp~~~vRa~MllRlnsL~~G~SGVr~evv 172 (705)
T 2yii_A 93 AEDGADIYGVTTGFGACSSRRTNRLSELQESLIRCLLAGVFTKGCAPSVDELPATATRSAMLLRLNSFTYGCSGIRWEVM 172 (705)
T ss_dssp HHTTCCCTTTSBCCGGGTTCBCSCHHHHHHHHHHHHCCCCCCC-----CCCBCHHHHHHHHHHHHHHHTTSCSCCCHHHH
T ss_pred HhcCCeeeeeecCCCccccccHHHHHHHHHHHHHHHhcCccCCCCccCCCCCCHHHHHHHHHHHHHHHccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999998544211 28999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHHhccCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhcccc
Q 005031 184 EAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNG 263 (718)
Q Consensus 184 e~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNG 263 (718)
|+|++|||+||+|+||++||| ||||+||||||++|+|+|++++++|+|+++|+.|||+++||+|++|+||||||||||
T Consensus 173 e~L~~lLN~~I~P~VP~~GSV--SGDLaPLAhial~LiGeG~v~~~~~~G~~~~a~eAL~~aGl~Pl~L~~KEGLALiNG 250 (705)
T 2yii_A 173 EALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNG 250 (705)
T ss_dssp HHHHHHHHTTEEECBCSCCCC--SSCHHHHHHHHHHHTTCTTCEEEESSSCEEEHHHHHHHTTCCCCCCCTTHHHHHHSS
T ss_pred HHHHHHHhCCCccccCCCCCc--ccchhHHHHHHHHHhCCCCeeeeccCCEEeeHHHHHHHcCCCCccCCcchHHHHHcC
Confidence 999999999999999999999 899999999999999999998777999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhhhhcCCCchHHHHHHHHHHHhcCCccchhhhhhcccC
Q 005031 264 TAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEID 343 (718)
Q Consensus 264 Ta~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d 343 (718)
|++|+|+|++++++|++|++++++++||++|+++|++++|||++|++||||||+++|++||++|+||+++...++.++.|
T Consensus 251 Ta~~ta~aalal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~ih~~RpHpGQ~~~A~~ir~lL~gS~l~~~~~~~~~~~ 330 (705)
T 2yii_A 251 TSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSID 330 (705)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHHHHTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHhhHHHHhcCCChhHHHHHHHHHHHhCcCcchhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987665444555
Q ss_pred CCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHH
Q 005031 344 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGK 423 (718)
Q Consensus 344 ~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~ 423 (718)
+.++++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|||||||+||+++||++++|+++||+
T Consensus 331 ~~~~rvQDpYSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGNFhg~pvalamD~L~iAla~lg~ 410 (705)
T 2yii_A 331 KLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGK 410 (705)
T ss_dssp GGGSCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSEEEGGGTEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCcCCceeechhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCccccCCCccchhHHHHHHHHHHHHHHHHH
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHH
Q 005031 424 LMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKT 503 (718)
Q Consensus 424 l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~ 503 (718)
++|||+++|+||.+|+|||+||+++++||+|||||++||++|||++|||+||||+|+|++|+++|||||||||++||||+
T Consensus 411 lserR~~~Lvdp~~n~GLP~fL~~~~~~GlnsGfmi~Q~taAal~sEnk~LA~PaSvds~pts~~qED~vSmg~~aArk~ 490 (705)
T 2yii_A 411 LLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKT 490 (705)
T ss_dssp HHHHHHHHHHCTTTTTTCCGGGCCCSSGGGCCTTHHHHHHHHHHHHHHHHHTSCSGGGCCCBTTTTBSSCCCHHHHHHHH
T ss_pred HHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccCCcccccCcccccccHHHHHHHH
Confidence 99999999999999899999998767899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHhhcchhhhccC
Q 005031 504 AEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDD 583 (718)
Q Consensus 504 ~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~~~~~~~~~~~ 583 (718)
.+++|++++|+||||+++|||+|||++++++.+.++++++++++++ + ++++ |++|+.++++++++|+|++|
T Consensus 491 ~~~venl~~vlAiELl~a~QAidlR~~~~~~~~~~~~~~~~~~~~~------~-l~~~--~~~~~~~~~~~~~~~~~~~~ 561 (705)
T 2yii_A 491 EEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADEC------G-LPND--TKARLLYVAKAVPVYTYLES 561 (705)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T-CCHH--HHHHHHHHHHHSCGGGTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHh------C-CChh--HHHHHHHHHhhhHHHHHhhc
Confidence 9999999999999999999999999999999999999999999886 2 5666 88999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCCCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh-cCCCCCCC-----ccccc
Q 005031 584 PCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVE-NGSPTIPN-----RIKEC 657 (718)
Q Consensus 584 ~~~~~~~l~~~l~~vl~d~~l~~~~~~~~~~~~~~~~I~~f~~~l~~~l~~~~~~~R~~f~-~g~~~~~~-----~ilg~ 657 (718)
||+.+||+|+|++++|+||+++++++++...+++|.+|..|+++++++|+++|+++|++|+ +|++++|| +|++|
T Consensus 562 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~n~~~~~ri~~~ 641 (705)
T 2yii_A 562 PCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLAEFEKRLSDRLENEMTAVRVLYEKKGHKTADNNDALVRIQGS 641 (705)
T ss_dssp TTCTTSHHHHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CGGGGS
T ss_pred cccccccHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchhhhhhcc
Confidence 9999999999999999999999877777778889999999999999999999999999999 88889999 99999
Q ss_pred ccchhhHHhhhhcCcccccCccccCCCchhHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 005031 658 RSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 718 (718)
Q Consensus 658 ~S~~LY~FVR~eLGv~~h~Ge~~~t~G~~is~i~~ai~~g~~~~~l~~cl~~~~~~~~~~~ 718 (718)
||||||+|||+|||||||+|++++|||+||||||+|||+|+++||||+||++|+|+|+||.
T Consensus 642 ~S~~lY~FVR~eLG~p~l~G~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~~~~~~~~~~~ 702 (705)
T 2yii_A 642 KFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFLGQPNGCA 702 (705)
T ss_dssp TTHHHHHHHHTTTTCCCCSTTCCSCHHHHHHHHHHHHHTTTTHHHHHHHTTTCC-------
T ss_pred CchhHHHHHHHHcCCCccCCCCCCCCCccHHHHHHHHHCCccHHHHHHHHHhhcCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999983
No 3
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
Probab=100.00 E-value=1.8e-183 Score=1559.36 Aligned_cols=659 Identities=36% Similarity=0.550 Sum_probs=590.7
Q ss_pred CCCCCCCCCHHHHHHHhhcCcHHHH---HHHHhhcCC-CeEEEcCCCcCHHHHHHHHcCCCceeeC--HHHHHHHHHHHH
Q 005031 26 NYSSGDALNWGVMAETLKGSHLEEV---KRMVAEYRK-PVVNLGGETLTVAQVAAIATSSTNVELS--ESAREGVKASSD 99 (718)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~-~~i~l~G~~Lti~~v~avA~~~~~v~Ls--~~a~~ri~~s~~ 99 (718)
++...++++|++||+.++++|+|+| ++|++ |++ +.|+|+|.+||++||++||+++.+|+|+ |++++||++|++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~~~~v~l~g~~Ltl~dv~aVa~~~~~v~l~~~~~a~~ri~~s~~ 99 (716)
T 1y2m_A 21 QAVNGASTNLAVAGSHLPTTQVTQVDIVEKMLA-APTDSTLELDGYSLNLGDVVSAARKGRPVRVKDSDEIRSKIDKSVE 99 (716)
T ss_dssp -----CCCCHHHHCCSSCCTTCCHHHHHHHHHT-SCSSSCEEECSSCCCHHHHHHHHHSCCCEEECCCHHHHHHHHHHHH
T ss_pred cccCCCCCCchhhhcccCCcHHHHHHHHHHHHh-hccCCeEEECCCCCCHHHHHHHHcCCCeeeeCCCHHHHHHHHHHHH
Confidence 3455699999999999999999999 99999 876 5699999999999999999999999999 999999999999
Q ss_pred HHHHHHhcCCcccccccCCCCCCcccccchhhhHHHHHHHhhcccccCCC-------CCCCCCChHHHHHHHHHHHHHhc
Q 005031 100 WVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGT-------ESSHTLPHSATRAAMLVRVNTLL 172 (718)
Q Consensus 100 ~l~~~~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~-------~~g~~lp~~~vRA~MlvRlNsL~ 172 (718)
+|++.+++ +|||||||||+++|+++++..+||+||||+|+||+|..+. ..+.+||+++|||+|++|+|+|+
T Consensus 100 ~v~~~~~~--~vYGVnTGfG~~a~~~i~~~~~LQ~nLirsHa~GvG~~~~~~~~~~~~~~~~lp~~~vRa~MllRlnsL~ 177 (716)
T 1y2m_A 100 FLRSQLSM--SVYGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENSLPLEVVRGAMTIRVNSLT 177 (716)
T ss_dssp HHC-----------------------CHHHHHHHHHHHHHHCCCCCCSCGGGCBTTBSCTTBCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhc--CCCccccCCCcccCcchhHHHHHHHHHHHHHhcCCCCCccccccccccccCCCCHHHHHHHHHHHHHHHc
Confidence 99999988 9999999999999999999999999999999999974100 00118999999999999999999
Q ss_pred CCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHHhccCCCcccc---CCCCeeecHHHHHHHCCCCC
Q 005031 173 QGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAT---GPNGEIIDAQEASKQAGFGF 249 (718)
Q Consensus 173 ~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~G~~~~~~~---~~~G~~~~a~eAL~~aGl~P 249 (718)
+||||||||++|+|++|||+||+|+||++|||||||||+||||||++|+|+|+++.. ..+|+++|+.|||+++||+|
T Consensus 178 ~G~SGVr~evle~L~~lLN~~i~P~VP~~GSVGASGDLaPLAhial~LiGeg~v~~~~~~~~~G~~~~a~eAL~~aGl~P 257 (716)
T 1y2m_A 178 RGHSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAMALFNLEP 257 (716)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTCEECCBSSCCCC-CBSHHHHHHHHHHHTTCTTCEEEEEETTEEEEEEHHHHHHHTTCCC
T ss_pred cCCCCCCHHHHHHHHHHHhCCCeeccCCCCCCCccccHHHHHHHHHHHcCCCCeEEecccCCCCeEeeHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999998632 12699999999999999999
Q ss_pred ccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhhhhc-CCCchHHHHHHHHHHHhc
Q 005031 250 FELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILD 328 (718)
Q Consensus 250 ~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~-RphpGQ~e~A~~ir~lL~ 328 (718)
++|+|||||||||||++|+|+|++++++|++|+.++++++||++|||+|++++|||++|++ ||||||+++|++||++|+
T Consensus 258 l~L~~KEGLALiNGTa~~ta~aalal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~ih~~~RpHpGQ~~~A~~ir~lL~ 337 (716)
T 1y2m_A 258 VVLGPKEGLGLVNGTAVSASMATLALHDAHMLSLLSQSLTAMTVEAMVGHAGSFHPFLHDVTRPHPTQIEVAGNIRKLLE 337 (716)
T ss_dssp CCCCTTHHHHHHSBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBGGGGCGGGTTTTSCCHHHHHHHHHHHHHHT
T ss_pred ccCCCchhHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhCHHHHhccCCCchHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCccchhhhhhcccCC-CCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH-hccCCCcccccCCCccccCCCCCCch
Q 005031 329 GSSYVNAAKKLHEIDP-LQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREI-NSVNDNPLIDVSRNKALHGGNFQGTP 406 (718)
Q Consensus 329 gS~~~~~~~~~~~~d~-~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~El-NS~tDNPlI~~~~~~vl~GGNF~~~~ 406 (718)
||+++....+.++.|+ .++++||||||||+||||||++|+|++++++|++|| ||+|||||||+++++++|||||||+|
T Consensus 338 gS~l~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~El~NS~tDNPlI~~~~g~v~sGGNFhg~~ 417 (716)
T 1y2m_A 338 GSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQAAA 417 (716)
T ss_dssp TCSSSBCHHHHC----CCCCCCSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSSEEETTTTEEECCCTTCTHH
T ss_pred cCcchhhhhhhcccccccCCcCcCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeCCCCeeecCCCccchH
Confidence 9999987654444442 356999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhccCCCcccccCcc
Q 005031 407 IGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAE 486 (718)
Q Consensus 407 va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae 486 (718)
|+++||++++|+++||+++|||+++|+||.+|+|||+||+++ +||+||||||+||++|||++||++||||+|+|++|++
T Consensus 418 va~amD~l~iAla~lg~lserR~~~Lvnp~~~~GLP~fL~~~-~~glnsG~m~~q~taAal~sE~k~LA~PaSvds~pts 496 (716)
T 1y2m_A 418 VANTMEKTRLGLAQIGKLNFTQLTEMLNAGMNRGLPSCLAAE-DPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQPAE 496 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTSTTCCGGGCSS-CGGGCCTTHHHHHHHHHHHHHHHHHTSCSGGGCCCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhCCC-CCCcCcchHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 999999999999999999999999999999999999999874 7999999999999999999999999999999999999
Q ss_pred ccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcCCHH
Q 005031 487 QHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEK 566 (718)
Q Consensus 487 ~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~ 566 (718)
+|||||||||++||||+.+++|++++|+||||+++|||+|||+++++|...+++.+.++.++++. .||+++
T Consensus 497 ~~~ED~vSmg~~aArk~~~~venl~~vlAiEll~a~QAidlR~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 567 (716)
T 1y2m_A 497 MANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFKKQFGPAIVSLIDQHFG---------SAMTGS 567 (716)
T ss_dssp TTTBSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------TTTTTS
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---------ccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999874 578888
Q ss_pred HHH-HHHhhcchhhhccC--CCCCchHHHHH-------HHHHHHHHHhhcCCCCCCccchhhhhHHHHHHHHHhhhHHHH
Q 005031 567 DLL-KAADREHVFAYIDD--PCSATYPLMQK-------LRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEV 636 (718)
Q Consensus 567 dl~-~~~~~~~~~~~~~~--~~~~~~~l~~~-------l~~vl~d~~l~~~~~~~~~~~~~~~~I~~f~~~l~~~l~~~~ 636 (718)
|+. ++.+ ++|.|++| +|+.+||+|+| ++++|+||+ +++ +++|++|..|+++++++|+++|
T Consensus 568 ~l~~~~~~--~~~~~~~~~~~~t~~~~l~~r~~~~~~~~~~~l~~~~-~~~-------~~~~~~i~~f~~~l~~~l~~~~ 637 (716)
T 1y2m_A 568 NLRDELVE--KVNKTLAKRLEQTNSYDLVPRWHDAFSFAAGTVVEVL-SST-------SLSLAAVNAWKVAAAESAISLT 637 (716)
T ss_dssp SHHHHHHH--HHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHT-TTS-------CCBHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHH-hcc-------ccHHHHHHHHHHHHHHHHHHHH
Confidence 999 8886 56888877 77799999997 789999986 321 5679999999999999999999
Q ss_pred HHHHHHhhcC---CCCCCCcccccccchhhHHhhhhcCcccccC-----ccccCCCchhHHHHHHHhcCcchhhHHHhhh
Q 005031 637 ENARQTVENG---SPTIPNRIKECRSYPLYRLVREELGSNFLTG-----EKVTSPGEEFDKVFTAMCQGKIIDPMLECLR 708 (718)
Q Consensus 637 ~~~R~~f~~g---~~~~~~~ilg~~S~~LY~FVR~eLGv~~h~G-----e~~~t~G~~is~i~~ai~~g~~~~~l~~cl~ 708 (718)
+++|++|++| .++++++ ++|||||||+|||+|||||||+| ++++|||+||||||||||+|++++|||+||+
T Consensus 638 ~~~R~~f~~~~~~~~~~~~~-lg~~S~plY~fVR~eLg~~~~~G~~~~g~~~~t~g~~~~~v~~ai~~g~~~~~~~~~~~ 716 (716)
T 1y2m_A 638 RQVRETFWSAASTSSPALSY-LSPRTQILYAFVREELGVKARRGDVFLGKQEVTIGSNVSKIYEAIKSGRINNVLLKMLA 716 (716)
T ss_dssp HHHHHHHHHSCGGGCGGGGT-SCTTHHHHHHHHHTTSCCCCCCCHHHHTSCCSCHHHHHHHHHHHHHTSTTHHHHHHHC-
T ss_pred HHHHHHHhcCCCCCccchhh-hcccchHHHHHHHHHcCCCccccccccCCCCCCCcccHHHHHHHHHcCccHHHHHHhhC
Confidence 9999999988 5688886 68999999999999999999996 8899999999999999999999999999985
No 4
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Probab=100.00 E-value=7.2e-149 Score=1247.05 Aligned_cols=498 Identities=27% Similarity=0.413 Sum_probs=474.8
Q ss_pred CCCeEEEcCCCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccc--cchhhhHHH
Q 005031 58 RKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKE 135 (718)
Q Consensus 58 ~~~~i~l~G~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~ 135 (718)
|++.|+|+|.+||++||++||+++.+|+|||++++||++|+++|++.+++|++|||||||||+++++++ ++..+||+|
T Consensus 24 ~~~~v~l~g~~Ltl~~v~~va~~~~~v~ls~~a~~ri~~sr~~v~~~~~~g~~vYGvnTGfG~~a~~~i~~~~~~~LQ~n 103 (547)
T 3unv_A 24 RTSFHISSGKDISLEEIARAARDHQPVTLHDEVVNRVTRSRSILESMVSDERVIYGVNTSMGGFVNYIVPIAKASELQNN 103 (547)
T ss_dssp --CEEECTTCCCCHHHHHHHHHHTCCEEECHHHHHHHHHHHHHHHHHHHTTCCCBTTTBCCGGGTTCBCCGGGHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHhCCCccccCHHHHHHHHHHHHHHHHHHhcCCceeceecCCCCccCCccCHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999986 688999999
Q ss_pred HHHHhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHH
Q 005031 136 LIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSY 215 (718)
Q Consensus 136 Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~ 215 (718)
|||+|+||+| ++||+++|||+|++|+|+|++|||||||+++|+|++|||+||+|+||++||||| ||+||||
T Consensus 104 LirsHa~GvG-------~~l~~~~vRa~mllRlnsL~~G~SGVr~evve~L~~lLN~~i~P~VP~~GSVGA--DLaPLah 174 (547)
T 3unv_A 104 LINAVATNVG-------KYFDDTTVRATMLARIVSLSRGNSAISIVNFKKLIEIYNQGIVPCIPEKGSLGX--DLGPLAA 174 (547)
T ss_dssp HHHHTCCCEE-------EECCHHHHHHHHHHHHHHHHTSCSCCCHHHHHHHHHHHHTTCEECCEEECCCSS--CHHHHHH
T ss_pred HHHHHhcCCC-------CCCCHHHHHHHHHHHHHHHccCCCCcCHHHHHHHHHHHhCCCcccCCCCCCCCc--cchHHHH
Confidence 9999999995 899999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhccCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005031 216 IAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEV 295 (718)
Q Consensus 216 Ia~~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Ea 295 (718)
||++|+|||+++ |+|+++|+.|||+++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++|+
T Consensus 175 ial~LiGeg~v~---~~G~~~~a~eaL~~aGl~Pl~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~Ea 251 (547)
T 3unv_A 175 IALVCTGQWKAR---YQGEQMSGAMALEKAGISPMELSFKEGLALINGTSAMVGLGVLLYDEVKRLFDTYLTVTSLSIEG 251 (547)
T ss_dssp HHHHHTTCSEEE---ETTEEEEHHHHHHHHTCCCCCCCTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceE---ECCEEeeHHHHHHHcCCCCccCCcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999875 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccCChhhhhcCCCchHHHHHHHHHHHhcCCccchhhhhh-----cccCC----CCCCCCccccccchhhhhhHHH
Q 005031 296 MQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKL-----HEIDP----LQKPKQDRYALRTSPQWLGPQI 366 (718)
Q Consensus 296 l~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~-----~~~d~----~~~~~QD~YSlR~~PQvlG~~~ 366 (718)
++|++++|||++|++||||||+++|++||++|+||+++...+.. ++.++ ..+++||||||||+||||||++
T Consensus 252 l~G~~~~fd~~ih~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~r~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~ 331 (547)
T 3unv_A 252 LHGKTKPFEPAVHRMKPHQGQLEVATTIWETLADSSLAVNEHEVEKLIAEEMDGLVKASNHQIEDAYSIRCTPQILGPVA 331 (547)
T ss_dssp TTCBSGGGCHHHHTTSCCHHHHHHHHHHHHHTTTCSSSBCHHHHHHHHHHHCSSSCCCCSCCSSCCHHHHTHHHHHHHHH
T ss_pred HcCCchhcChHHHhhCCCchHHHHHHHHHHHhcCCcccccccccccccccccccccccccCcCcCCccccchhHHhHHHH
Confidence 99999999999999999999999999999999999998765422 11222 2357999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 005031 367 EVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 446 (718)
Q Consensus 367 d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~ 446 (718)
|+|++++++|++||||+||||+||+++++++|||||||+||+++||++++|+++||+++|||+.+|+||.+|+|||+||+
T Consensus 332 d~l~~a~~~le~ElNS~tDNPli~~~~g~v~sgGNFhg~pva~amD~l~iAla~lg~iserR~~~Lvnp~~s~GLP~fL~ 411 (547)
T 3unv_A 332 DTLKNIKQTLTNELNSSNDNPLIDQTTEEVFHNGHFHGQYVSMAMDHLNIALVTMMNLANRRIDRFMDKSNSNGLPPFLC 411 (547)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSEEETTTTEEECCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSCCGGGC
T ss_pred HHHHHHHHHHHHHHccCCCCCceeCCCCceecCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCChhhc
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005031 447 GGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAID 526 (718)
Q Consensus 447 ~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAid 526 (718)
+ ++||+|||||++||++|||++|||+||+|+|+|++|+++|||||||||++||||+.+++|++++|+||||+++|||+|
T Consensus 412 ~-~~~glnsGfmi~Q~taaal~sE~k~La~PaSvds~pts~~qED~vSmg~~aArk~~~~ven~~~vlAiEll~a~QAid 490 (547)
T 3unv_A 412 A-ENAGLRLGLMGGQFMTASITAESRASCMPMSIQSLSTTGDFQDIVSFGLVAARRVREQLKNLKYVFSFELLCACQAVD 490 (547)
T ss_dssp C-SSBTTBCTTTTHHHHHHHHHHHHHHTCCCSTTCCCCBTTTTBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCcccccHHHHHHHHHHHHHHHHhcCCCccCCccccCcchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 379999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHhhc
Q 005031 527 LRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADRE 575 (718)
Q Consensus 527 LR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~~~ 575 (718)
||. +.++++.++++++.+|+.+++++ +||++.+||+++.+..
T Consensus 491 lr~-~~~~s~~~~~~~~~vR~~Vp~~~------~DR~l~~dI~~~~~~i 532 (547)
T 3unv_A 491 IRG-TAGLSKRTRALYDKTRTLVPYLE------EDKTISDYIESIAQTV 532 (547)
T ss_dssp HHC-STTCCHHHHHHHHHHHTTSCCCS------SCCCCHHHHHHHHHHT
T ss_pred hhc-ccCCCHHHHHHHHHHHHhCCCcc------CCCCChHHHHHHHHHH
Confidence 996 56889999999999999998765 6999999999998765
No 5
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A*
Probab=100.00 E-value=8.1e-147 Score=1234.26 Aligned_cols=505 Identities=34% Similarity=0.493 Sum_probs=457.0
Q ss_pred eEEEcCCCcCHHHHHHHHcCC--CceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccc--cchhhhHHHH
Q 005031 61 VVNLGGETLTVAQVAAIATSS--TNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKEL 136 (718)
Q Consensus 61 ~i~l~G~~Lti~~v~avA~~~--~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~L 136 (718)
+|+|+|.+||++||++||+++ ++|+++|++++||++|+++|++.+++|++|||||||||+++++++ ++..+||+||
T Consensus 25 ~v~l~g~~Lt~~~v~~va~~~~~~~v~l~~~a~~ri~~sr~~v~~~~~~g~~vYGvnTGfG~~a~~~I~~~~~~~LQ~nL 104 (565)
T 2nyn_A 25 NVIIGNQKLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFGGMANVAISREQASELQTNL 104 (565)
T ss_dssp CEEESSSCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHSCC-----------------CCSHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHhCCCCceEeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCcccCHHHHHHHHHHH
Confidence 589999999999999999887 899999999999999999999999999999999999999999885 6889999999
Q ss_pred HHHhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHH
Q 005031 137 IRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYI 216 (718)
Q Consensus 137 ir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~I 216 (718)
||+|+||+| ++||+++|||+|++|+|+|++||||||+|++|+|++|||+||+|+||++||||| ||+|||||
T Consensus 105 irsHa~GvG-------~~l~~~~vRa~mllRlnsL~~G~SGVr~evve~L~~lLN~~i~P~VP~~GSVGA--DLaPLAhi 175 (565)
T 2nyn_A 105 VWFLKTGAG-------NKLPLADVRAAMLLRANSHMRGASGIRLELIKRMEIFLNAGVTPYVYEFGSIGX--DLVPLSYI 175 (565)
T ss_dssp HHHTCCCEE-------EECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHTEEECCEEESCCSS--CHHHHHHH
T ss_pred HHHHhccCC-------CCCCHHHHHHHHHHHHHHHccCcCCCcHHHHHHHHHHHhCCCccccCCCCCccc--hHHHHHHH
Confidence 999999995 899999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhccCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005031 217 AGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVM 296 (718)
Q Consensus 217 a~~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal 296 (718)
|++|+|||+++.+.|+|+++|+.|||+++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++|++
T Consensus 176 al~LiGeg~~~~v~~~G~~~~a~eaL~~aGl~Pl~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~A~~~~Als~Eal 255 (565)
T 2nyn_A 176 TGSLIGLDPSFKVDFNGKEMDAPTALRQLNLSPLTLLPKEGLAMMNGTSVMTGIAANCVYDTQILTAIAMGVHALDIQAL 255 (565)
T ss_dssp HHHHTTCCTTSEEEETTEEEEHHHHHHHTTCCCCCCCTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCceEEECCEEeeHHHHHHHcCCCCccCCCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999955556899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCChhhhhcCCCchHHHHHHHHHHHhcCCccchhh-hhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 005031 297 QGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAA-KKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKS 375 (718)
Q Consensus 297 ~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~-~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ 375 (718)
+|++++|||++|++||||||+++|++||++|+||+++... .+.|.. ..++++||||||||+||||||++|+|++++++
T Consensus 256 ~G~~~~fd~~ih~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~~~~~-~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~ 334 (565)
T 2nyn_A 256 NGTNQSFHPFIHNSKPHPGQLWAADQMISLLANSQLVRDELDGKHDY-RDHELIQDRYSLRCLPQYLGPIVDGISQIAKQ 334 (565)
T ss_dssp TCBSGGGCHHHHHTSCCHHHHHHHHHHHHHHTTCSSSBCCTTCC---------CCSCHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhCHHHHHhCCCchHHHHHHHHHHHhccCccccccccccccc-cCCCcCcCCcccccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998751 111100 01358999999999999999999999999999
Q ss_pred HHHHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccc
Q 005031 376 IEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDY 455 (718)
Q Consensus 376 ie~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~ 455 (718)
|++||||+|||||||+++++++|||||||+||+++||++++|+++||+++|||+.+|+||.+|+|||+||+++++||+||
T Consensus 335 le~ElNS~tDNPlI~~~~g~v~sgGNFhg~~va~a~D~l~iAla~lg~lserR~~~Lvdp~~s~GLP~fL~~~~~~glns 414 (565)
T 2nyn_A 335 IEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGMGMDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNM 414 (565)
T ss_dssp HHHHHTSCCSSSEEEGGGTEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSCCGGGCSCTTSTTCC
T ss_pred HHHHHhcCCCCCeEeCCCCeeccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCChhhcCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999889999998643399999
Q ss_pred hhhHHHHHHHHHHHHHhhccCC-CcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h--
Q 005031 456 GFKGAEIAMASYCSELQFLANP-VTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHL-E-- 531 (718)
Q Consensus 456 Gf~~~qi~~aal~sEl~~LA~P-vS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~-~-- 531 (718)
|||++||++|||++|||+|||| +|+|++|+++|||||||||++||||+.+++|++++|+||||+++|||+|||+. .
T Consensus 415 Gfmi~q~taaal~sE~k~La~P~aSvds~pts~~qED~vSmg~~aArk~~~~v~n~~~vlAiEll~a~QAidlr~~~~~~ 494 (565)
T 2nyn_A 415 GLKGLQICGNSIMPLLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALMFGVQAVDLRTYKKTG 494 (565)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSCCGGGCCTTTTTTTCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHhcCCCeecccccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999999963 2
Q ss_pred -----hhhhhHHHHHHHHHHHHHh----hcCCCCCCCCCcCCHHHHHHHHhhc
Q 005031 532 -----ENLKHTVKNTVSQVAKKVL----TVGASGELHPSRFCEKDLLKAADRE 575 (718)
Q Consensus 532 -----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dr~~~~dl~~~~~~~ 575 (718)
.++++.++++++.+|+.++ ....++.+.+||++.+||.++.+..
T Consensus 495 ~~~~~~~~~~~~~~~~~~vR~~vp~~~~~~~~~~~~~~DR~l~~di~~~~~~i 547 (565)
T 2nyn_A 495 HYDARACLSPATERLYSAVRHVVGQKPTSDRPYIWNDNEQGLDEHIARISADI 547 (565)
T ss_dssp SCCGGGTSCHHHHHHHHHHHHHHTCCCBTTBCSCCCGGGCCHHHHHHHHHHHH
T ss_pred cccccccCChhHHHHHHHHHHhCCccccccccCCCCCCCcccHHHHHHHHHHH
Confidence 6789999999999999998 3344456778999999999988755
No 6
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Probab=100.00 E-value=2.5e-146 Score=1221.67 Aligned_cols=486 Identities=29% Similarity=0.430 Sum_probs=469.5
Q ss_pred eEEEcCCCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccc--cchhhhHHHHHH
Q 005031 61 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIR 138 (718)
Q Consensus 61 ~i~l~G~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Lir 138 (718)
+|+|+|.+||++||++||+++++|+++|++++||++|+++|++.+++|++|||||||||+++++++ ++..+||+||||
T Consensus 2 ~v~l~g~~Lt~~~v~~va~~~~~v~l~~~a~~~i~~s~~~v~~~~~~~~~vYGvnTGfG~~~~~~I~~~~~~~lQ~nLi~ 81 (507)
T 1gkm_A 2 ELTLKPGTLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLVL 81 (507)
T ss_dssp EEEECTTCCCHHHHHHHHHSCCEEEECGGGHHHHHHHHHHHHHHHHTTCCCTTTTBCSGGGTTCBCCHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCcccCHHHHHHHHHHHHH
Confidence 588999999999999999989999999999999999999999999999999999999999999986 678999999999
Q ss_pred HhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHH
Q 005031 139 FLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAG 218 (718)
Q Consensus 139 ~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~ 218 (718)
+|+||+| ++||+++|||+|++|+|+|++||||||||++|+|++|||+||+|+||++|||| |||+||||||+
T Consensus 82 sha~GvG-------~~l~~~~vRa~m~~RlnsL~~G~SGVr~evv~~l~~~LN~~i~P~VP~~GSvG--GDLapLahial 152 (507)
T 1gkm_A 82 SHAAGIG-------APLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVG--XDLAPLAHMSL 152 (507)
T ss_dssp HHCCCEE-------EECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHTEEECCEEECCCC--CSHHHHHHHHH
T ss_pred HHhccCC-------CCCCHHHHHHHHHHHHHHHccCcCcCcHHHHHHHHHHHHCCCcccCCCCCCcc--hhhHHHHHHHH
Confidence 9999995 89999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhccCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005031 219 LLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQG 298 (718)
Q Consensus 219 ~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G 298 (718)
+|+|||+++ |+|+++|+.|||+++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++|+++|
T Consensus 153 ~LiGeg~v~---~~G~~~~a~eaL~~~Gl~P~~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~Eal~G 229 (507)
T 1gkm_A 153 VLLGEGKAR---YKGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLG 229 (507)
T ss_dssp GGGTCSEEE---ETTEEEEHHHHHHHTTCCCCCCCTTHHHHHHSBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCCcee---ECCEEeeHHHHHHHcCCCCCCCCcchhHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999865 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCChhhhhcCCCchHHHHHHHHHHHh-cCCccchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 005031 299 KPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIE 377 (718)
Q Consensus 299 ~~~~fd~~ih~~RphpGQ~e~A~~ir~lL-~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie 377 (718)
++++|||++|++||||||+++|++||++| +||+++.... .++++||||||||+||||||++|+|++++++|+
T Consensus 230 ~~~~fd~~i~~~Rph~GQ~~~A~~lr~lL~~gS~l~~~~~-------~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le 302 (507)
T 1gkm_A 230 SRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK-------NADKVQDPYSLRCQPQVMGACLTQLRQAAEVLG 302 (507)
T ss_dssp CSGGGCHHHHHHHCCHHHHHHHHHHHHHHCSCCHHHHHTT-------TGGGSCCCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCHHHHHhccCchHHHHHHHHHHHHHcCChhhhccC-------CCCcCcCCcccccchhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999987542 124899999999999999999999999999999
Q ss_pred HHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchh
Q 005031 378 REINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGF 457 (718)
Q Consensus 378 ~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf 457 (718)
+||||+||||+||+++++++|||||||+||+++||++++|+++||+++|||+.+|+||.+| |||+||++ +||+||||
T Consensus 303 ~ElNS~tDNPli~~~~~~v~sgGNFhg~~va~a~D~l~iAla~l~~iserR~~~L~d~~~s-gLP~fL~~--~~glnsGf 379 (507)
T 1gkm_A 303 IEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMS-QLPPFLVE--NGGVNSGF 379 (507)
T ss_dssp HHHTCCCCSSEEETTTTEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-SSCGGGCS--STTTCCTT
T ss_pred HHHhcCCCCCeeeCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-CCChhhcC--CCCcCccc
Confidence 9999999999999999999999999999999999999999999999999999999999986 99999984 78999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Q 005031 458 KGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHT 537 (718)
Q Consensus 458 ~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~ 537 (718)
|++||++|||++|||+||+|+|+|++|+++|||||||||++||||+.+++|++++|+|||++++|||+|||+ +.++++.
T Consensus 380 mi~q~taaal~sE~k~La~PaSvds~pts~~qED~vSmg~~aArk~~~~v~n~~~vlAiEll~a~QAidlr~-~~~~~~~ 458 (507)
T 1gkm_A 380 MIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRK-GLKTSAK 458 (507)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSTTCCCCBTTTTBCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TCCCCHH
T ss_pred hHHHHHHHHHHHHHHHhcCCcccCCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCChH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 5678999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHhhc
Q 005031 538 VKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADRE 575 (718)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~~~ 575 (718)
++++++.+|+.+++++ +||++.+||.++.+..
T Consensus 459 ~~~~~~~vR~~vp~~~------~DR~l~~di~~~~~~l 490 (507)
T 1gkm_A 459 LEKARQALRSEVAHYD------RDRFFAPDIEKAVELL 490 (507)
T ss_dssp HHHHHHHHHTTSCCCC------SCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcc------CCcCcHHHHHHHHHHH
Confidence 9999999999998755 6999999999988765
No 7
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A*
Probab=100.00 E-value=1.8e-145 Score=1217.93 Aligned_cols=494 Identities=29% Similarity=0.440 Sum_probs=470.5
Q ss_pred eEEEcCCCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccc--cchhhhHHHHHH
Q 005031 61 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIR 138 (718)
Q Consensus 61 ~i~l~G~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Lir 138 (718)
.|+|+ .+||++||++||+++.+|+|+|++++||++|+++|++.+++|++|||||||||+++++++ ++..+||+||||
T Consensus 10 ~v~l~-~~Ltl~~v~~va~~~~~v~l~~~a~~ri~~s~~~v~~~~~~~~~vYGvnTGfG~~~~~~i~~~~~~~lQ~nLi~ 88 (521)
T 2o6y_A 10 AVELD-RHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLVH 88 (521)
T ss_dssp EEEES-SCCCHHHHHHHHTTSSEEEECHHHHHHHHHHHHHHHHHHHTTBCCTTTSBCSGGGGGBBCCGGGHHHHHHHHHH
T ss_pred eEEeC-CCCCHHHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHHHhcCCCcceecCCCCcccCccCCHHHHHHHHHHHHH
Confidence 48899 999999999999989999999999999999999999999999999999999999999988 789999999999
Q ss_pred HhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHH
Q 005031 139 FLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAG 218 (718)
Q Consensus 139 ~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~ 218 (718)
+|+||+| ++||+++|||+|++|+|+|++||||||+|++|+|++|||+||+|+||++||||| ||+||||||+
T Consensus 89 sha~GvG-------~~l~~~~vRa~m~~RlnsL~~G~SGVr~evve~l~~~LN~~i~P~VP~~GSvGA--DLaPLahial 159 (521)
T 2o6y_A 89 HLASGVG-------PVLDWTTARAMVLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGX--DLTPLAHMVL 159 (521)
T ss_dssp HHCCCEE-------EECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHTSSCEECCEEECCCSS--CHHHHHHHHH
T ss_pred HHhccCC-------CCCCHHHHHHHHHHHHHHHccCCCcCcHHHHHHHHHHHhCCCcccCCCCCCccc--chHHHHHHHH
Confidence 9999995 899999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhccCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005031 219 LLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQG 298 (718)
Q Consensus 219 ~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G 298 (718)
+|+|||+++ .|+|+++|+.|||+++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++|+++|
T Consensus 160 ~LiGeg~v~--~~~G~~~~a~eaL~~aGl~P~~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~Eal~G 237 (521)
T 2o6y_A 160 CLQGRGDFL--DRDGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRG 237 (521)
T ss_dssp HHTTSSCEE--CTTCCEECHHHHHHHTTCCCCCCTTSCGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCCceE--eeCCEEecHHHHHHHcCCCCCCCCcchHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999864 379999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCChhhhhcCCCchHHHHHHHHHHHhcCCccchhhh------hhcccCCCCCCCCccccccchhhhhhHHHHHHHHH
Q 005031 299 KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAK------KLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFA 372 (718)
Q Consensus 299 ~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~------~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a 372 (718)
++++|||++|++||||||+++|++||++|+||+++...+ ..++.++.++++||||||||+||||||++|+|+++
T Consensus 238 ~~~~fd~~ih~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a 317 (521)
T 2o6y_A 238 RTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWH 317 (521)
T ss_dssp BGGGGCHHHHHHSCCHHHHHHHHHHHHHTTTCSSSBCCCGGGCBCCGGGCSBCSSCSSCCHHHHTHHHHHHHHHHHHHHH
T ss_pred chhhhCHHHHhcCCCchHHHHHHHHHHHhccCccccccccccccccccccccccCcCcCcccccchhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999987653 22233444569999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcccccCCC--ccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCC
Q 005031 373 TKSIEREINSVNDNPLIDVSRN--KALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRN 450 (718)
Q Consensus 373 ~~~ie~ElNS~tDNPlI~~~~~--~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~ 450 (718)
+++|++||||+||||+ |++++ +++|||||||+||+++||++++|+++||+++|||+.+|+||.+|+|||+||+. ++
T Consensus 318 ~~~l~~ElNS~tDNPl-~~~~~~~~v~sgGNFhg~~va~a~D~l~iAla~l~~iserR~~~L~~~~~~~gLP~fL~~-~~ 395 (521)
T 2o6y_A 318 DRVLTIELNAVTDNPV-FPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHR-GP 395 (521)
T ss_dssp HHHHHHHHTSCCCSSB-CCTTCSSSCBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTTTCCGGGCC-SS
T ss_pred HHHHHHHHhcCCcCCC-CCCCCCceeccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhcCC-CC
Confidence 9999999999999999 98888 99999999999999999999999999999999999999999998899999943 58
Q ss_pred CCccchhhHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005031 451 PSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHL 530 (718)
Q Consensus 451 p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~ 530 (718)
||+|||||++||++|||++|||+|| |+|+|++|+++|||||||||++||||+.+++|++++|+|||++++|||+|||..
T Consensus 396 ~glnsGfm~~q~taaal~sE~k~La-PaS~ds~pts~~~ED~vSmg~~aArk~~~~v~n~~~vlAiell~a~QAidlr~~ 474 (521)
T 2o6y_A 396 AGLNSGFMGAQVTATALLAEMRATG-PASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELRCG 474 (521)
T ss_dssp BTTBCTTHHHHHHHHHHHHHHHTBC-CSGGGCCCBTTTTBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHHHHHHHHHHHHHHHhC-CCccCcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999943
Q ss_pred h-hh-hhhHHHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHhhc
Q 005031 531 E-EN-LKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADRE 575 (718)
Q Consensus 531 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~~~ 575 (718)
+ .+ +++.++++++.+|+.+++++ +||++.+||.++.+..
T Consensus 475 ~~~~~~~~~~~~~~~~vR~~vp~~~------~DR~l~~di~~~~~~l 515 (521)
T 2o6y_A 475 SGLDGVSPAGKKLVQALREQFPPLE------TDRPLGQEIAALATHL 515 (521)
T ss_dssp TTTTTCCHHHHHHHHHHHTTSCCCS------SCCCCHHHHHHHHHHH
T ss_pred ccccCCChhHHHHHHHHHHhCCCcc------CCcCcHHHHHHHHHHH
Confidence 3 45 89999999999999988755 6999999999987754
No 8
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A*
Probab=100.00 E-value=2.2e-145 Score=1218.49 Aligned_cols=493 Identities=31% Similarity=0.450 Sum_probs=470.4
Q ss_pred eEEEcCCCcCHHHHHHHHcCCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccc--cchhhhHHHHHH
Q 005031 61 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIR 138 (718)
Q Consensus 61 ~i~l~G~~Lti~~v~avA~~~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Lir 138 (718)
.|+|+|.+||++||++||+++++|+|+|++++||++|+++|++.+++|++|||||||||+++++++ ++..+||+||||
T Consensus 1 ~v~l~g~~Lt~~~v~~va~~~~~v~l~~~a~~ri~~s~~~v~~~~~~~~~vYGvnTGfG~~a~~~i~~~~~~~LQ~nLi~ 80 (526)
T 2qve_A 1 PVSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLVR 80 (526)
T ss_dssp CEECCSSSCCHHHHHHHHHSCCCEECCHHHHHHHHHHHHHHHHHHTTTCCCTTTSBCSGGGGGEEECGGGHHHHHHHHHH
T ss_pred CeEecCCCCCHHHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCCCcCHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999999999999999999999987 789999999999
Q ss_pred HhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHH
Q 005031 139 FLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAG 218 (718)
Q Consensus 139 ~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~ 218 (718)
+|+||+| ++||+++|||+|++|+|+|++||||||+|++|+|++|||+||+|+||++||||| ||+||||||+
T Consensus 81 sha~GvG-------~~l~~~~vRa~m~~RlnsL~~G~SGVr~evve~l~~~LN~~i~P~VP~~GSvGA--DLaPLahial 151 (526)
T 2qve_A 81 SHSAGVG-------PLFAEDEARAIVAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGX--DLAPLSHVAS 151 (526)
T ss_dssp HTCCCEE-------EECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHHTTCEECCEEECCCSS--CHHHHHHHHH
T ss_pred HHhccCC-------CCCCHHHHHHHHHHHHHHHccCcCCCcHHHHHHHHHHHhCCCccccCCCCCcch--hhHHHHHHHH
Confidence 9999995 899999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhccCCCccccCCCCeeecHHHHHHHCCCCCccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005031 219 LLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQG 298 (718)
Q Consensus 219 ~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G 298 (718)
+|+|||+++ |+|+++|+.|||+++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++|+++|
T Consensus 152 ~LiGeg~v~---~~G~~~~a~eaL~~~Gl~P~~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~Eal~G 228 (526)
T 2qve_A 152 TLIGEGYVL---RDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRG 228 (526)
T ss_dssp HHTTCSEEE---ETTEEEEHHHHHHTTTCCCCCCCTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCCcee---ECCEeecHHHHHHHcCCCCCCCCchHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999865 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCChhhhhc-CCCchHHHHHHHHHHHhcCCccchhhhhhc-----------ccCCCCCCCCccccccchhhhhhHHH
Q 005031 299 KPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVNAAKKLH-----------EIDPLQKPKQDRYALRTSPQWLGPQI 366 (718)
Q Consensus 299 ~~~~fd~~ih~~-RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~-----------~~d~~~~~~QD~YSlR~~PQvlG~~~ 366 (718)
++++|||++|++ ||||||+++|++||.+|+||+++...+..+ ..++.++++||||||||+||||||++
T Consensus 229 ~~~~fd~~ih~~~Rph~GQ~~~A~~lr~lL~gS~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~ 308 (526)
T 2qve_A 229 STSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVR 308 (526)
T ss_dssp BSGGGCGGGTTTTCCCHHHHHHHHHHHHHHTTCSSSBCHHHHHHHHHHHCCSSCSEECCSCCSSCCGGGTSHHHHHHHHH
T ss_pred chhhhCHHHHhccCCCchHHHHHHHHHHHhccCcccccchhhhcccccccccccccccccCcCcCCeeccchhhhhHHHH
Confidence 999999999999 999999999999999999999987653211 12233568999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcccccCCCccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 005031 367 EVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 446 (718)
Q Consensus 367 d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~ 446 (718)
|+|++++++|++||||+||||||| ++++++|||||||+||+++||++++|+++||+++|||+.+|+||.+|+|||+||+
T Consensus 309 d~l~~a~~~le~ElNS~tDNPli~-~~~~v~sgGNFhg~~va~a~D~l~iAla~lg~lserR~~~L~d~~~~~gLP~fL~ 387 (526)
T 2qve_A 309 DTLYHARHKLRIELNSANDNPLFF-EGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLV 387 (526)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSBCC-TTSCCBCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCGGGC
T ss_pred HHHHHHHHHHHHHHhcCCCCCccc-CCCceecCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhcC
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999889999994
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHhhccCCCcccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005031 447 GGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAID 526 (718)
Q Consensus 447 ~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAid 526 (718)
. ++||+|||||++||++|||++|||+|| |+|+|++|+++|||||||||++||||+.+++|++++|+|||++++|||+|
T Consensus 388 ~-~~~glnsGfm~~q~taaal~sE~k~La-PaSvds~pts~~~ED~vSmg~~aArk~~~~v~n~~~vlAiEll~a~QAid 465 (526)
T 2qve_A 388 S-GDPGLHSGFAGAQYPATALVAENRTIG-PASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAAQAVD 465 (526)
T ss_dssp S-SCBTTBCTTHHHHHHHHHHHHHHTTCC-CSTTCCCCBTTTTBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCcCcccHHHHHHHHHHHHHHHHhC-CCccCCccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 589999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhh-hhhHHHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHHHhhc
Q 005031 527 LRHLEEN-LKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADRE 575 (718)
Q Consensus 527 LR~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~~~~~ 575 (718)
||. +.+ +++.++++++.+|+.+++++ +||++.+||.++.+..
T Consensus 466 lr~-~~~~~~~~~~~~~~~vR~~vp~~~------~DR~l~~di~~~~~~l 508 (526)
T 2qve_A 466 ISG-RFDGLSPAAKATYEAVRRLVPTLG------VDRYMADDIELVADAL 508 (526)
T ss_dssp HHT-CGGGSCHHHHHHHHHHHHHSCCCC------SCCCCHHHHHHHHHHH
T ss_pred Hhc-cccCCChhHHHHHHHHHHhCCCcc------CCcCcHHHHHHHHHHH
Confidence 996 345 89999999999999998755 6999999999987755
No 9
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Probab=15.13 E-value=2.7e+02 Score=31.34 Aligned_cols=43 Identities=9% Similarity=0.154 Sum_probs=36.9
Q ss_pred cccccchhhHHhhhhcCcccccCccccCCCchhHHHHHHHhcCcchh
Q 005031 655 KECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIID 701 (718)
Q Consensus 655 lg~~S~~LY~FVR~eLGv~~h~Ge~~~t~G~~is~i~~ai~~g~~~~ 701 (718)
.+.++..+|+.||+. |||.. +++....+|.++.+.|++|++..
T Consensus 455 ~~~~~~~~~~~vR~~--vp~~~--~DR~l~~di~~~~~~l~~~~~~~ 497 (507)
T 1gkm_A 455 TSAKLEKARQALRSE--VAHYD--RDRFFAPDIEKAVELLAKGSLTG 497 (507)
T ss_dssp CCHHHHHHHHHHHTT--SCCCC--SCCCCHHHHHHHHHHHHTTTTGG
T ss_pred CChHHHHHHHHHHHh--CCCcc--CCcCcHHHHHHHHHHHHcCCHHh
Confidence 457899999999996 77774 67889999999999999999854
No 10
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=13.34 E-value=3.5e+02 Score=19.94 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.4
Q ss_pred eeCHHHHHHHHHHHHHHHHHHhcCCccc
Q 005031 85 ELSESAREGVKASSDWVMESMNKGTDSY 112 (718)
Q Consensus 85 ~Ls~~a~~ri~~s~~~l~~~~~~g~~iY 112 (718)
..|++...-+++|.+++++++.+..+||
T Consensus 10 ~~S~~F~~F~~rsskviERAL~e~yDi~ 37 (38)
T 3l9k_W 10 ILSENFQRFVVRAGRVIERALSENVDIY 37 (38)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred hcCHHHHHHHHHHHHHHHHHHccccccc
Confidence 3588999999999999999999887765
Done!